Query 036237
Match_columns 689
No_of_seqs 808 out of 4982
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 18:31:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3E-43 1E-47 392.8 35.6 506 29-548 31-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1E-38 3.5E-43 356.1 29.8 474 51-531 82-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-25 5.5E-30 235.2 36.9 367 95-534 7-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 2.2E-27 7.4E-32 254.5 20.4 184 282-466 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 3.7E-24 1.3E-28 224.8 38.0 344 196-547 7-367 (388)
6 4g26_A Pentatricopeptide repea 99.9 1.2E-25 4.2E-30 240.9 21.8 200 298-498 7-223 (501)
7 3fp2_A TPR repeat-containing p 99.9 4E-22 1.4E-26 218.8 33.4 422 86-547 24-490 (537)
8 2gw1_A Mitochondrial precursor 99.9 5E-22 1.7E-26 216.5 31.6 431 88-525 7-489 (514)
9 2gw1_A Mitochondrial precursor 99.9 7E-22 2.4E-26 215.4 28.4 419 123-548 7-478 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 6.3E-21 2.2E-25 204.2 32.2 322 187-544 25-405 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1.5E-20 5.2E-25 201.2 30.6 370 142-537 12-443 (450)
12 3fp2_A TPR repeat-containing p 99.9 2.6E-19 9.1E-24 196.2 31.4 428 54-523 26-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.4E-17 4.9E-22 171.7 31.2 302 221-530 5-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 4.1E-17 1.4E-21 168.3 34.2 294 250-548 3-335 (359)
15 1b89_A Protein (clathrin heavy 99.8 9.6E-19 3.3E-23 178.7 20.2 348 169-549 15-386 (449)
16 1b89_A Protein (clathrin heavy 99.8 2.6E-18 8.8E-23 175.5 21.6 281 68-373 16-304 (449)
17 3hym_B Cell division cycle pro 99.8 1.4E-16 4.8E-21 162.3 29.8 283 251-536 23-322 (330)
18 1xi4_A Clathrin heavy chain; a 99.8 8.4E-15 2.9E-19 166.0 45.7 380 123-540 986-1376(1630)
19 2xm6_A Protein corresponding t 99.8 7.7E-16 2.6E-20 166.5 35.8 349 170-531 56-452 (490)
20 2ooe_A Cleavage stimulation fa 99.8 1.5E-15 5.3E-20 165.9 38.4 405 121-547 12-491 (530)
21 1xi4_A Clathrin heavy chain; a 99.8 3.6E-14 1.2E-18 160.9 47.8 455 27-533 930-1415(1630)
22 1fch_A Peroxisomal targeting s 99.8 5.2E-17 1.8E-21 168.6 23.2 272 232-544 38-355 (368)
23 3hym_B Cell division cycle pro 99.8 2.5E-16 8.4E-21 160.5 27.6 264 279-547 20-298 (330)
24 2ooe_A Cleavage stimulation fa 99.7 2.3E-15 7.7E-20 164.6 33.3 407 84-517 10-495 (530)
25 1fch_A Peroxisomal targeting s 99.7 2.7E-16 9.3E-21 163.1 23.3 289 200-513 37-358 (368)
26 2xm6_A Protein corresponding t 99.7 1E-14 3.6E-19 157.6 36.6 350 186-550 37-434 (490)
27 3mkr_A Coatomer subunit epsilo 99.7 3.5E-15 1.2E-19 149.0 29.4 267 260-540 9-286 (291)
28 4eqf_A PEX5-related protein; a 99.7 5.6E-16 1.9E-20 160.7 21.0 256 251-544 66-352 (365)
29 4eqf_A PEX5-related protein; a 99.7 6.6E-16 2.2E-20 160.2 21.3 229 316-547 65-309 (365)
30 3mkr_A Coatomer subunit epsilo 99.7 2.6E-15 8.9E-20 150.0 23.7 246 288-548 6-264 (291)
31 4g1t_A Interferon-induced prot 99.7 6.1E-15 2.1E-19 158.6 28.5 355 156-551 50-462 (472)
32 3cv0_A Peroxisome targeting si 99.7 2.2E-15 7.5E-20 153.2 21.3 256 251-545 22-312 (327)
33 3spa_A Mtrpol, DNA-directed RN 99.6 2.2E-16 7.6E-21 173.5 9.3 132 347-479 123-262 (1134)
34 3spa_A Mtrpol, DNA-directed RN 99.6 1.1E-16 3.8E-21 175.8 6.3 149 52-202 126-286 (1134)
35 3cv0_A Peroxisome targeting si 99.6 2.8E-14 9.6E-19 144.9 23.8 270 220-516 22-317 (327)
36 4g1t_A Interferon-induced prot 99.6 3.8E-14 1.3E-18 152.4 26.0 376 121-526 50-471 (472)
37 2pl2_A Hypothetical conserved 99.6 4E-14 1.4E-18 134.9 19.8 193 348-545 2-211 (217)
38 3uq3_A Heat shock protein STI1 99.6 1.3E-13 4.4E-18 134.7 22.9 218 282-548 6-236 (258)
39 3uq3_A Heat shock protein STI1 99.6 1.3E-13 4.3E-18 134.8 20.4 239 250-527 5-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.6E-13 1.6E-17 132.3 20.7 240 294-542 18-269 (275)
41 3u4t_A TPR repeat-containing p 99.5 4.3E-13 1.5E-17 132.4 19.5 243 252-532 5-268 (272)
42 3e4b_A ALGK; tetratricopeptide 99.5 7.4E-13 2.5E-17 141.0 22.6 367 130-546 11-419 (452)
43 3e4b_A ALGK; tetratricopeptide 99.5 1.2E-12 4.3E-17 139.3 22.5 342 194-550 9-389 (452)
44 2ho1_A Type 4 fimbrial biogene 99.5 3.4E-12 1.2E-16 124.3 21.5 196 351-548 37-238 (252)
45 1ouv_A Conserved hypothetical 99.5 1.7E-11 5.9E-16 121.1 26.7 223 280-549 5-252 (273)
46 2vq2_A PILW, putative fimbrial 99.5 4.7E-12 1.6E-16 120.6 21.5 196 350-547 7-210 (225)
47 2q7f_A YRRB protein; TPR, prot 99.5 1.6E-12 5.6E-17 125.7 18.5 196 350-548 22-222 (243)
48 1ouv_A Conserved hypothetical 99.5 1.7E-11 5.7E-16 121.2 25.9 225 249-518 5-255 (273)
49 2ho1_A Type 4 fimbrial biogene 99.5 1.6E-11 5.4E-16 119.6 24.6 205 281-523 37-247 (252)
50 2h6f_A Protein farnesyltransfe 99.4 3E-12 1E-16 132.3 19.3 241 282-530 98-364 (382)
51 2q7f_A YRRB protein; TPR, prot 99.4 2.1E-12 7.2E-17 124.9 17.2 212 280-530 22-238 (243)
52 2pl2_A Hypothetical conserved 99.4 7.1E-12 2.4E-16 119.2 19.6 191 282-479 6-211 (217)
53 4a1s_A PINS, partner of inscut 99.4 2E-12 6.7E-17 136.2 16.9 258 288-547 55-371 (411)
54 3sf4_A G-protein-signaling mod 99.4 5.5E-12 1.9E-16 132.2 20.2 262 284-547 12-335 (406)
55 2vq2_A PILW, putative fimbrial 99.4 2.6E-11 8.8E-16 115.4 23.0 208 280-525 7-222 (225)
56 3ro2_A PINS homolog, G-protein 99.4 4.8E-12 1.6E-16 128.6 18.1 259 288-548 12-332 (338)
57 3u4t_A TPR repeat-containing p 99.4 2.7E-11 9.4E-16 119.3 22.6 219 325-548 12-250 (272)
58 3vtx_A MAMA; tetratricopeptide 99.4 1.7E-11 5.8E-16 113.1 19.5 164 381-548 4-170 (184)
59 1xnf_A Lipoprotein NLPI; TPR, 99.4 4.2E-12 1.4E-16 125.4 16.3 242 68-339 18-269 (275)
60 3sf4_A G-protein-signaling mod 99.4 6.3E-12 2.2E-16 131.7 17.7 286 220-536 10-364 (406)
61 4abn_A Tetratricopeptide repea 99.4 3.3E-12 1.1E-16 136.9 15.2 206 333-544 85-317 (474)
62 2h6f_A Protein farnesyltransfe 99.4 1.3E-11 4.3E-16 127.5 18.0 224 317-547 98-347 (382)
63 4e6h_A MRNA 3'-END-processing 99.3 2.2E-09 7.4E-14 118.4 35.1 413 84-519 63-575 (679)
64 4a1s_A PINS, partner of inscut 99.3 8E-12 2.7E-16 131.5 15.3 265 221-516 50-374 (411)
65 4gyw_A UDP-N-acetylglucosamine 99.3 2E-11 6.8E-16 136.2 17.5 162 381-547 8-173 (723)
66 3ro2_A PINS homolog, G-protein 99.3 5.7E-11 1.9E-15 120.5 19.2 265 222-517 8-335 (338)
67 3vtx_A MAMA; tetratricopeptide 99.3 8E-11 2.7E-15 108.5 17.1 166 350-519 4-175 (184)
68 2ond_A Cleavage stimulation fa 99.3 6.9E-10 2.4E-14 111.7 25.0 184 333-519 81-275 (308)
69 3ulq_A Response regulator aspa 99.3 6.6E-11 2.3E-15 123.3 17.7 195 352-547 144-367 (383)
70 3ulq_A Response regulator aspa 99.3 1.4E-10 4.7E-15 120.8 19.7 230 287-516 109-370 (383)
71 3nf1_A KLC 1, kinesin light ch 99.3 1.4E-11 4.7E-16 123.9 11.6 237 280-547 26-306 (311)
72 3as5_A MAMA; tetratricopeptide 99.2 2.7E-10 9.1E-15 104.5 17.6 160 385-547 11-172 (186)
73 3nf1_A KLC 1, kinesin light ch 99.2 1.9E-11 6.6E-16 122.8 10.3 237 250-517 27-310 (311)
74 2ond_A Cleavage stimulation fa 99.2 8E-10 2.7E-14 111.2 21.7 211 334-549 34-271 (308)
75 1hz4_A MALT regulatory protein 99.2 6.3E-09 2.2E-13 107.6 28.6 259 289-547 22-321 (373)
76 4abn_A Tetratricopeptide repea 99.2 4.1E-10 1.4E-14 120.6 18.9 178 366-548 83-287 (474)
77 4i17_A Hypothetical protein; T 99.2 9.7E-10 3.3E-14 105.1 19.3 203 315-529 6-224 (228)
78 4i17_A Hypothetical protein; T 99.2 5.5E-10 1.9E-14 106.8 17.3 150 383-535 8-169 (228)
79 3as5_A MAMA; tetratricopeptide 99.2 1.5E-09 5E-14 99.5 18.9 168 351-521 8-180 (186)
80 4e6h_A MRNA 3'-END-processing 99.2 5.5E-08 1.9E-12 107.2 34.3 430 99-549 44-571 (679)
81 3q15_A PSP28, response regulat 99.1 1.5E-09 5.2E-14 112.7 18.5 193 353-546 143-363 (378)
82 3q15_A PSP28, response regulat 99.1 9.2E-09 3.1E-13 106.7 24.4 228 287-514 107-365 (378)
83 1hz4_A MALT regulatory protein 99.1 2.3E-08 7.7E-13 103.5 25.5 232 284-516 56-324 (373)
84 3edt_B KLC 2, kinesin light ch 99.1 1.1E-09 3.7E-14 108.0 14.0 198 350-547 42-280 (283)
85 4gyw_A UDP-N-acetylglucosamine 99.1 7.3E-10 2.5E-14 123.6 13.6 163 349-516 7-176 (723)
86 1qqe_A Vesicular transport pro 99.0 6.9E-09 2.3E-13 103.4 17.4 166 352-519 78-274 (292)
87 3qky_A Outer membrane assembly 99.0 2.3E-08 7.9E-13 97.7 20.5 204 350-594 14-247 (261)
88 3mv2_B Coatomer subunit epsilo 99.0 5.9E-08 2E-12 95.0 20.7 174 370-548 85-282 (310)
89 1qqe_A Vesicular transport pro 98.9 9.1E-09 3.1E-13 102.5 15.1 200 331-545 32-266 (292)
90 4ga2_A E3 SUMO-protein ligase 98.9 1.3E-09 4.5E-14 96.6 7.8 136 394-534 9-149 (150)
91 3edt_B KLC 2, kinesin light ch 98.9 3.7E-08 1.2E-12 96.9 18.9 164 351-514 85-281 (283)
92 3qky_A Outer membrane assembly 98.9 3.7E-08 1.3E-12 96.2 17.8 200 315-535 14-248 (261)
93 2pzi_A Probable serine/threoni 98.9 6.2E-09 2.1E-13 116.6 13.0 167 362-534 402-583 (681)
94 2fo7_A Synthetic consensus TPR 98.9 3.1E-08 1E-12 85.0 14.6 129 384-547 3-131 (136)
95 2fo7_A Synthetic consensus TPR 98.9 4.9E-08 1.7E-12 83.7 15.9 123 353-478 3-128 (136)
96 2yhc_A BAMD, UPF0169 lipoprote 98.9 7.7E-08 2.6E-12 91.6 18.5 180 351-550 4-215 (225)
97 3qou_A Protein YBBN; thioredox 98.9 5.6E-08 1.9E-12 96.4 17.4 176 366-546 101-282 (287)
98 3mv2_B Coatomer subunit epsilo 98.9 2.6E-07 8.8E-12 90.5 21.3 180 335-522 85-290 (310)
99 3rjv_A Putative SEL1 repeat pr 98.8 2.2E-07 7.5E-12 87.5 18.7 172 370-550 5-199 (212)
100 4ga2_A E3 SUMO-protein ligase 98.8 3.2E-08 1.1E-12 87.5 11.4 122 423-547 3-128 (150)
101 2r5s_A Uncharacterized protein 98.8 6.4E-08 2.2E-12 88.2 12.8 76 472-547 93-172 (176)
102 3gyz_A Chaperone protein IPGC; 98.8 4.9E-08 1.7E-12 86.1 11.1 102 448-549 30-134 (151)
103 3urz_A Uncharacterized protein 98.7 1.6E-07 5.3E-12 88.2 15.0 125 388-518 60-190 (208)
104 2vsy_A XCC0866; transferase, g 98.7 1E-07 3.5E-12 104.6 15.8 159 364-526 2-169 (568)
105 2vgx_A Chaperone SYCD; alterna 98.7 6.8E-08 2.3E-12 85.1 10.3 101 448-548 15-118 (148)
106 2vsy_A XCC0866; transferase, g 98.7 2.6E-07 8.8E-12 101.5 16.9 145 330-479 3-154 (568)
107 2ifu_A Gamma-SNAP; membrane fu 98.7 3.6E-07 1.2E-11 91.5 16.2 219 294-540 4-253 (307)
108 2qfc_A PLCR protein; TPR, HTH, 98.7 7.9E-07 2.7E-11 88.3 18.4 164 383-546 76-264 (293)
109 2pzi_A Probable serine/threoni 98.7 8.1E-07 2.8E-11 99.4 20.3 187 327-520 402-608 (681)
110 2uy1_A Cleavage stimulation fa 98.7 8.1E-06 2.8E-10 87.2 27.1 365 100-512 7-411 (493)
111 4gco_A Protein STI-1; structur 98.6 2.4E-07 8.3E-12 78.9 12.1 108 419-528 15-124 (126)
112 3u3w_A Transcriptional activat 98.6 2.7E-06 9.1E-11 84.5 21.2 160 387-546 80-264 (293)
113 4gco_A Protein STI-1; structur 98.6 1.8E-07 6.3E-12 79.7 10.7 99 449-547 8-109 (126)
114 2r5s_A Uncharacterized protein 98.6 4E-07 1.4E-11 82.8 13.6 155 354-513 9-172 (176)
115 2yhc_A BAMD, UPF0169 lipoprote 98.6 9.7E-07 3.3E-11 83.9 16.6 184 316-520 4-219 (225)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.6 8.5E-07 2.9E-11 83.2 15.8 124 421-549 10-151 (213)
117 3urz_A Uncharacterized protein 98.6 1.2E-06 4.1E-11 82.1 15.6 184 285-493 8-198 (208)
118 3rjv_A Putative SEL1 repeat pr 98.6 2.2E-06 7.5E-11 80.5 17.3 172 335-516 5-199 (212)
119 3qou_A Protein YBBN; thioredox 98.6 6.5E-07 2.2E-11 88.6 14.1 162 348-513 114-283 (287)
120 2xcb_A PCRH, regulatory protei 98.6 5E-07 1.7E-11 78.8 11.7 99 449-547 13-114 (142)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2E-06 6.7E-11 80.7 16.2 144 355-518 10-154 (213)
122 1na0_A Designed protein CTPR3; 98.5 1.5E-06 5.2E-11 73.0 13.6 113 419-533 11-125 (125)
123 2c2l_A CHIP, carboxy terminus 98.5 2.1E-07 7.1E-12 91.9 9.3 189 351-547 4-198 (281)
124 1a17_A Serine/threonine protei 98.5 1.4E-06 4.9E-11 77.7 13.8 125 420-546 16-144 (166)
125 2uy1_A Cleavage stimulation fa 98.5 5.2E-05 1.8E-09 80.9 27.9 335 69-409 28-411 (493)
126 2ifu_A Gamma-SNAP; membrane fu 98.5 5.5E-07 1.9E-11 90.2 11.8 197 328-546 3-222 (307)
127 3dra_A Protein farnesyltransfe 98.5 1.8E-05 6E-10 78.2 22.4 179 366-547 84-286 (306)
128 2vyi_A SGTA protein; chaperone 98.5 1.5E-06 5E-11 73.8 12.9 116 419-536 14-131 (131)
129 3u3w_A Transcriptional activat 98.5 2.1E-05 7.3E-10 77.9 22.5 157 357-513 81-265 (293)
130 2lni_A Stress-induced-phosphop 98.5 1.5E-06 5.3E-11 74.1 12.4 113 419-534 18-133 (133)
131 1p5q_A FKBP52, FK506-binding p 98.4 9.1E-07 3.1E-11 89.8 11.9 94 453-546 196-292 (336)
132 4f3v_A ESX-1 secretion system 98.4 5E-07 1.7E-11 87.3 9.3 181 363-548 18-237 (282)
133 3dra_A Protein farnesyltransfe 98.4 6.6E-05 2.3E-09 74.1 24.1 222 298-525 50-299 (306)
134 3upv_A Heat shock protein STI1 98.4 2.8E-06 9.4E-11 72.1 11.5 94 454-547 5-100 (126)
135 4f3v_A ESX-1 secretion system 98.4 9.4E-07 3.2E-11 85.4 9.3 136 385-525 105-247 (282)
136 2e2e_A Formate-dependent nitri 98.4 1.2E-06 4.2E-11 79.5 9.7 119 429-549 22-145 (177)
137 2qfc_A PLCR protein; TPR, HTH, 98.3 1E-05 3.5E-10 80.2 16.7 161 353-513 77-265 (293)
138 2kck_A TPR repeat; tetratricop 98.3 3.3E-06 1.1E-10 69.4 10.9 97 453-549 6-107 (112)
139 2vgx_A Chaperone SYCD; alterna 98.3 1.7E-06 5.7E-11 76.1 8.9 103 419-523 23-127 (148)
140 1hxi_A PEX5, peroxisome target 98.3 2E-06 6.9E-11 72.5 9.1 94 455-548 19-114 (121)
141 3gyz_A Chaperone protein IPGC; 98.3 2.4E-06 8.1E-11 75.2 9.7 98 419-519 38-138 (151)
142 3gw4_A Uncharacterized protein 98.3 4.9E-06 1.7E-10 77.1 12.5 116 363-478 4-132 (203)
143 3q49_B STIP1 homology and U bo 98.3 5.2E-06 1.8E-10 71.4 11.9 98 451-548 7-106 (137)
144 3sz7_A HSC70 cochaperone (SGT) 98.3 3.7E-06 1.3E-10 75.2 10.5 94 454-547 12-107 (164)
145 1elw_A TPR1-domain of HOP; HOP 98.3 1.3E-05 4.4E-10 66.4 13.0 107 420-528 7-115 (118)
146 2dba_A Smooth muscle cell asso 98.3 1.7E-05 5.7E-10 69.0 14.1 108 420-530 31-144 (148)
147 2fbn_A 70 kDa peptidylprolyl i 98.3 7.4E-06 2.5E-10 75.8 12.4 168 360-548 13-186 (198)
148 2e2e_A Formate-dependent nitri 98.2 6.5E-06 2.2E-10 74.6 11.4 126 394-522 22-152 (177)
149 1na0_A Designed protein CTPR3; 98.2 8.6E-06 3E-10 68.2 11.5 96 453-548 9-106 (125)
150 1elw_A TPR1-domain of HOP; HOP 98.2 7.7E-06 2.6E-10 67.8 11.0 96 453-548 4-101 (118)
151 3gw4_A Uncharacterized protein 98.2 9.3E-06 3.2E-10 75.1 12.7 48 262-309 4-54 (203)
152 2lni_A Stress-induced-phosphop 98.2 7.4E-06 2.5E-10 69.7 10.9 97 452-548 15-113 (133)
153 4gcn_A Protein STI-1; structur 98.2 5.5E-06 1.9E-10 70.5 9.6 94 454-547 9-111 (127)
154 2dba_A Smooth muscle cell asso 98.2 1.3E-05 4.5E-10 69.7 12.1 97 452-548 27-128 (148)
155 1a17_A Serine/threonine protei 98.2 1.9E-05 6.6E-10 70.2 13.1 127 384-513 15-145 (166)
156 3upv_A Heat shock protein STI1 98.2 1.5E-05 5E-10 67.5 11.6 109 419-529 6-122 (126)
157 3sz7_A HSC70 cochaperone (SGT) 98.2 1.6E-05 5.4E-10 71.0 12.4 106 419-527 13-121 (164)
158 2xcb_A PCRH, regulatory protei 98.1 1E-05 3.5E-10 70.3 10.1 105 419-525 20-126 (142)
159 3rkv_A Putative peptidylprolyl 98.1 1.7E-05 5.7E-10 70.7 11.7 63 485-547 63-125 (162)
160 2hr2_A Hypothetical protein; a 98.1 8.4E-06 2.9E-10 71.1 9.0 63 485-547 57-130 (159)
161 2vyi_A SGTA protein; chaperone 98.1 2.1E-05 7.2E-10 66.4 11.5 96 453-548 12-109 (131)
162 2c2l_A CHIP, carboxy terminus 98.1 1.6E-05 5.5E-10 78.3 10.9 93 88-182 5-97 (281)
163 3q49_B STIP1 homology and U bo 98.0 2.8E-05 9.7E-10 66.6 10.8 99 417-517 9-109 (137)
164 1wao_1 Serine/threonine protei 98.0 3.6E-05 1.2E-09 81.9 13.8 118 355-477 10-134 (477)
165 2xev_A YBGF; tetratricopeptide 98.0 1.4E-05 4.8E-10 67.8 8.6 89 459-547 8-104 (129)
166 3q7a_A Farnesyltransferase alp 98.0 0.00053 1.8E-08 68.4 20.8 179 366-547 104-330 (349)
167 4b4t_Q 26S proteasome regulato 98.0 7.4E-05 2.5E-09 78.5 15.5 162 385-546 58-243 (434)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 3.9E-05 1.3E-09 81.2 13.4 144 382-547 268-414 (457)
169 1wao_1 Serine/threonine protei 98.0 1.5E-05 5E-10 84.9 10.1 116 426-544 15-135 (477)
170 1elr_A TPR2A-domain of HOP; HO 98.0 5.6E-05 1.9E-09 63.8 12.0 105 423-530 10-123 (131)
171 4gcn_A Protein STI-1; structur 98.0 5.2E-05 1.8E-09 64.3 11.7 104 384-517 10-115 (127)
172 1elr_A TPR2A-domain of HOP; HO 98.0 2.1E-05 7.3E-10 66.5 9.2 96 453-548 4-108 (131)
173 3dss_A Geranylgeranyl transfer 98.0 0.0011 3.8E-08 65.8 22.6 225 293-525 41-315 (331)
174 2kck_A TPR repeat; tetratricop 98.0 5E-05 1.7E-09 62.1 11.1 99 419-519 8-111 (112)
175 1p5q_A FKBP52, FK506-binding p 98.0 5.7E-05 1.9E-09 76.4 13.6 129 381-513 146-293 (336)
176 3k9i_A BH0479 protein; putativ 98.0 5.2E-06 1.8E-10 69.4 4.9 82 466-547 3-89 (117)
177 3ro3_A PINS homolog, G-protein 98.0 2.7E-05 9.2E-10 68.6 9.7 62 486-547 90-157 (164)
178 2hr2_A Hypothetical protein; a 97.9 1.4E-05 4.9E-10 69.6 7.0 71 455-525 59-142 (159)
179 2xev_A YBGF; tetratricopeptide 97.9 7.5E-05 2.5E-09 63.2 11.6 99 424-525 9-116 (129)
180 2fbn_A 70 kDa peptidylprolyl i 97.9 0.00012 4.3E-09 67.4 13.7 94 455-548 40-151 (198)
181 3q7a_A Farnesyltransferase alp 97.9 0.0025 8.5E-08 63.6 23.5 222 294-521 67-339 (349)
182 3n71_A Histone lysine methyltr 97.9 7.9E-05 2.7E-09 78.8 13.4 124 426-549 318-465 (490)
183 3dss_A Geranylgeranyl transfer 97.9 0.0011 3.8E-08 65.8 20.8 216 328-547 41-303 (331)
184 3ro3_A PINS homolog, G-protein 97.9 6.2E-05 2.1E-09 66.2 10.2 131 385-515 12-159 (164)
185 1ihg_A Cyclophilin 40; ppiase 97.9 5.3E-05 1.8E-09 77.6 11.0 136 383-540 224-362 (370)
186 1hxi_A PEX5, peroxisome target 97.9 6.2E-05 2.1E-09 63.2 9.6 95 422-519 22-119 (121)
187 4b4t_Q 26S proteasome regulato 97.9 0.0002 6.9E-09 75.1 15.8 123 357-479 101-242 (434)
188 2if4_A ATFKBP42; FKBP-like, al 97.9 2E-05 7E-10 79.8 7.5 147 382-548 179-328 (338)
189 3k9i_A BH0479 protein; putativ 97.8 2.8E-05 9.5E-10 64.9 6.8 92 430-522 3-98 (117)
190 3rkv_A Putative peptidylprolyl 97.8 5.3E-05 1.8E-09 67.4 9.0 76 453-528 63-141 (162)
191 2l6j_A TPR repeat-containing p 97.8 4.7E-05 1.6E-09 62.3 7.8 92 452-543 3-102 (111)
192 2if4_A ATFKBP42; FKBP-like, al 97.8 5E-05 1.7E-09 76.9 9.0 151 351-519 179-333 (338)
193 3ma5_A Tetratricopeptide repea 97.7 0.00011 3.7E-09 59.2 8.8 65 483-547 5-69 (100)
194 1dce_A Protein (RAB geranylger 97.7 0.0012 4.2E-08 71.4 19.2 168 366-537 44-244 (567)
195 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00033 1.1E-08 74.1 14.1 64 485-548 317-380 (457)
196 1na3_A Designed protein CTPR2; 97.7 0.0002 7E-09 55.9 9.5 81 453-533 9-91 (91)
197 1ihg_A Cyclophilin 40; ppiase 97.7 0.00019 6.6E-09 73.4 11.6 112 418-548 224-336 (370)
198 2kat_A Uncharacterized protein 97.6 0.00014 4.9E-09 60.1 7.5 76 472-547 4-81 (115)
199 1zu2_A Mitochondrial import re 97.5 7.1E-05 2.4E-09 65.0 4.4 83 466-548 15-120 (158)
200 3bee_A Putative YFRE protein; 97.5 0.00057 2E-08 53.9 9.3 70 482-551 3-75 (93)
201 3n71_A Histone lysine methyltr 97.5 0.00019 6.4E-09 76.0 8.3 115 462-594 318-450 (490)
202 3qwp_A SET and MYND domain-con 97.4 0.00024 8.1E-09 74.0 8.0 114 462-593 296-427 (429)
203 2l6j_A TPR repeat-containing p 97.4 0.00047 1.6E-08 56.2 7.8 66 483-548 2-67 (111)
204 1klx_A Cysteine rich protein B 97.3 0.0023 7.7E-08 54.9 11.4 90 459-550 31-128 (138)
205 1zu2_A Mitochondrial import re 97.2 0.00034 1.2E-08 60.7 5.6 71 471-548 64-147 (158)
206 3qww_A SET and MYND domain-con 97.2 0.00029 9.9E-09 73.2 5.5 62 486-547 341-410 (433)
207 1na3_A Designed protein CTPR2; 97.2 0.0011 3.8E-08 51.5 7.6 65 484-548 8-72 (91)
208 1klx_A Cysteine rich protein B 97.1 0.0027 9.1E-08 54.5 9.5 112 396-516 9-128 (138)
209 3qww_A SET and MYND domain-con 97.0 0.0029 9.9E-08 65.7 11.4 93 430-522 311-424 (433)
210 3mkq_A Coatomer beta'-subunit; 97.0 0.05 1.7E-06 61.8 22.9 167 196-407 607-774 (814)
211 1dce_A Protein (RAB geranylger 97.0 0.0096 3.3E-07 64.4 15.8 148 396-547 43-220 (567)
212 3qwp_A SET and MYND domain-con 97.0 0.0045 1.5E-07 64.3 12.6 99 426-524 296-415 (429)
213 2kat_A Uncharacterized protein 97.0 0.0025 8.5E-08 52.4 8.5 79 436-517 4-85 (115)
214 3ly7_A Transcriptional activat 97.0 0.024 8.2E-07 56.5 16.6 46 379-426 191-242 (372)
215 1pc2_A Mitochondria fission pr 96.9 0.0052 1.8E-07 52.7 9.8 90 483-598 30-124 (152)
216 3ma5_A Tetratricopeptide repea 96.8 0.0052 1.8E-07 49.1 8.3 62 381-444 6-68 (100)
217 3ly7_A Transcriptional activat 96.7 0.013 4.3E-07 58.5 12.0 133 413-549 190-340 (372)
218 2kc7_A BFR218_protein; tetratr 96.7 0.0082 2.8E-07 47.5 9.0 64 459-522 6-72 (99)
219 1wy6_A Hypothetical protein ST 96.7 0.12 4.1E-06 42.5 15.1 138 395-551 20-157 (172)
220 2kc7_A BFR218_protein; tetratr 96.7 0.0037 1.3E-07 49.6 6.7 58 491-548 6-64 (99)
221 3mkq_A Coatomer beta'-subunit; 96.4 0.11 3.6E-06 59.1 19.1 46 362-409 663-708 (814)
222 2v5f_A Prolyl 4-hydroxylase su 95.8 0.054 1.8E-06 43.4 9.6 71 456-526 8-87 (104)
223 3lvg_A Clathrin heavy chain 1; 95.8 0.0017 5.6E-08 66.0 0.1 360 89-476 56-535 (624)
224 3u64_A Protein TP_0956; tetrat 95.7 0.033 1.1E-06 53.1 8.5 87 469-555 179-276 (301)
225 1nzn_A CGI-135 protein, fissio 95.5 0.059 2E-06 44.3 8.2 87 430-518 14-107 (126)
226 3mkq_B Coatomer subunit alpha; 95.3 1.3 4.3E-05 38.9 16.6 102 258-376 13-114 (177)
227 1pc2_A Mitochondria fission pr 95.2 0.059 2E-06 46.1 7.8 71 451-521 30-107 (152)
228 1y8m_A FIS1; mitochondria, unk 95.0 0.53 1.8E-05 39.4 12.5 65 483-547 37-105 (144)
229 3bee_A Putative YFRE protein; 94.7 0.21 7E-06 38.9 9.3 69 451-519 4-77 (93)
230 3mkq_B Coatomer subunit alpha; 94.6 1.2 4E-05 39.1 14.5 128 360-511 14-141 (177)
231 3lvg_A Clathrin heavy chain 1; 94.1 0.0029 9.8E-08 64.3 -3.6 234 158-403 55-325 (624)
232 2v5f_A Prolyl 4-hydroxylase su 93.5 0.27 9.1E-06 39.2 8.0 64 484-547 4-74 (104)
233 3u64_A Protein TP_0956; tetrat 92.8 0.1 3.4E-06 49.9 4.8 81 434-517 180-272 (301)
234 4gns_B Protein CSD3, chitin bi 92.4 0.51 1.7E-05 52.0 10.4 53 494-546 346-398 (754)
235 1nzn_A CGI-135 protein, fissio 92.3 1.3 4.3E-05 36.4 10.2 78 399-479 18-100 (126)
236 3ltj_A Alpharep-4; protein eng 92.2 6.1 0.00021 35.3 19.1 111 155-265 26-136 (201)
237 1qsa_A Protein (soluble lytic 91.6 17 0.00058 39.2 30.4 115 396-513 228-347 (618)
238 3o48_A Mitochondria fission 1 91.5 0.81 2.8E-05 37.7 8.1 46 502-547 60-106 (134)
239 3ltm_A Alpha-REP4; protein eng 90.8 8.9 0.0003 34.5 18.9 140 156-295 32-171 (211)
240 3ltm_A Alpha-REP4; protein eng 89.4 12 0.0004 33.7 19.0 156 172-331 17-172 (211)
241 3ltj_A Alpharep-4; protein eng 88.7 13 0.00043 33.1 18.2 149 77-234 19-167 (201)
242 1wy6_A Hypothetical protein ST 88.3 3.5 0.00012 34.0 9.2 84 68-154 74-157 (172)
243 4h7y_A Dual specificity protei 88.0 3.6 0.00012 34.7 9.4 99 84-184 10-121 (161)
244 2p58_C Putative type III secre 87.1 7.9 0.00027 29.9 9.8 59 259-320 49-107 (116)
245 2p58_C Putative type III secre 87.1 6.5 0.00022 30.3 9.4 87 331-422 22-108 (116)
246 2uwj_G Type III export protein 86.6 6.1 0.00021 30.4 9.0 86 332-422 22-107 (115)
247 2ff4_A Probable regulatory pro 85.8 1.6 5.5E-05 44.3 7.7 68 488-555 174-246 (388)
248 2wpv_A GET4, UPF0363 protein Y 84.9 29 0.001 33.5 21.1 180 229-445 23-216 (312)
249 2uwj_G Type III export protein 84.6 7.4 0.00025 30.0 8.6 59 259-320 48-106 (115)
250 3txn_A 26S proteasome regulato 84.2 31 0.0011 34.6 16.1 57 423-479 105-165 (394)
251 4h7y_A Dual specificity protei 84.1 4.8 0.00016 34.0 8.2 51 499-549 74-124 (161)
252 4fhn_B Nucleoporin NUP120; pro 83.9 9.7 0.00033 44.8 14.2 188 357-546 818-1048(1139)
253 1v54_E Cytochrome C oxidase po 83.6 5.2 0.00018 31.0 7.6 63 397-461 25-87 (109)
254 4ady_A RPN2, 26S proteasome re 83.5 65 0.0022 36.4 28.2 254 228-490 383-666 (963)
255 3ffl_A Anaphase-promoting comp 82.9 9.3 0.00032 32.9 9.8 25 520-544 123-147 (167)
256 3ffl_A Anaphase-promoting comp 82.6 6.6 0.00023 33.8 8.8 24 457-480 126-149 (167)
257 3o48_A Mitochondria fission 1 82.3 14 0.00048 30.4 10.2 35 485-519 78-112 (134)
258 4b4t_P 26S proteasome regulato 82.0 49 0.0017 33.9 22.3 95 385-479 140-244 (445)
259 3lpz_A GET4 (YOR164C homolog); 81.8 40 0.0014 32.8 21.7 166 254-445 39-215 (336)
260 1y8m_A FIS1; mitochondria, unk 81.6 22 0.00075 29.7 11.9 69 451-519 37-111 (144)
261 4b4t_P 26S proteasome regulato 81.0 53 0.0018 33.7 17.9 92 422-513 142-246 (445)
262 4ady_A RPN2, 26S proteasome re 80.4 82 0.0028 35.5 27.4 250 258-512 382-656 (963)
263 4gns_B Protein CSD3, chitin bi 79.4 18 0.0006 39.9 13.1 52 132-184 347-398 (754)
264 3lpz_A GET4 (YOR164C homolog); 79.3 49 0.0017 32.2 22.5 167 354-547 38-215 (336)
265 2ff4_A Probable regulatory pro 79.0 11 0.00039 37.9 11.0 69 386-455 175-247 (388)
266 1v54_E Cytochrome C oxidase po 77.6 10 0.00034 29.5 7.3 61 104-165 27-87 (109)
267 2y69_E Cytochrome C oxidase su 76.4 11 0.00037 31.0 7.6 62 398-461 69-130 (152)
268 1oyz_A Hypothetical protein YI 75.4 54 0.0018 30.7 19.6 15 155-169 103-117 (280)
269 4fhn_B Nucleoporin NUP120; pro 75.1 25 0.00084 41.3 13.8 65 487-551 901-970 (1139)
270 1zbp_A Hypothetical protein VP 69.5 37 0.0013 31.8 10.7 22 498-519 113-134 (273)
271 2y69_E Cytochrome C oxidase su 66.0 23 0.00079 29.1 7.3 60 105-165 71-130 (152)
272 2wpv_A GET4, UPF0363 protein Y 65.6 99 0.0034 29.8 21.9 168 353-547 35-216 (312)
273 1zbp_A Hypothetical protein VP 64.5 11 0.00038 35.3 6.1 58 461-518 5-64 (273)
274 2qx5_A Nucleoporin NIC96; mRNA 63.7 51 0.0017 35.7 11.9 81 287-378 300-383 (661)
275 3kea_A K1L; tropism, ANK repea 60.4 71 0.0024 30.1 11.6 17 302-318 209-225 (285)
276 2nsz_A Programmed cell death p 56.5 63 0.0022 26.4 8.8 64 253-316 10-78 (129)
277 1wdy_A 2-5A-dependent ribonucl 55.9 1.3E+02 0.0043 27.8 16.0 52 128-183 8-62 (285)
278 4b4t_R RPN7, 26S proteasome re 54.2 31 0.0011 35.2 8.1 61 384-444 133-195 (429)
279 1n11_A Ankyrin; clathrin, BAND 53.0 1.9E+02 0.0065 29.0 14.7 13 68-80 24-36 (437)
280 1qsa_A Protein (soluble lytic 50.8 2.6E+02 0.0088 29.9 37.1 241 295-553 228-484 (618)
281 3mv2_A Coatomer subunit alpha; 49.8 1.8E+02 0.0063 27.9 12.3 58 478-549 198-257 (325)
282 3kea_A K1L; tropism, ANK repea 49.2 61 0.0021 30.6 9.0 13 68-80 41-53 (285)
283 3esl_A Checkpoint serine/threo 48.4 1.5E+02 0.005 26.4 12.9 85 487-597 82-168 (202)
284 3eiq_C Programmed cell death p 48.1 2.1E+02 0.0072 28.1 13.8 70 253-322 220-294 (358)
285 1wdy_A 2-5A-dependent ribonucl 47.7 1.7E+02 0.0057 26.8 12.0 83 92-182 7-94 (285)
286 2ion_A PDCD4, programmed cell 46.5 64 0.0022 27.3 7.5 64 253-316 12-80 (152)
287 4b4t_S RPN3, 26S proteasome re 46.4 1.6E+02 0.0056 30.5 11.8 179 351-551 231-432 (523)
288 2qx5_A Nucleoporin NIC96; mRNA 46.0 3.1E+02 0.011 29.5 20.3 44 89-134 155-198 (661)
289 1k1a_A B-cell lymphoma 3-encod 44.7 1.7E+02 0.0058 26.1 11.2 83 97-183 16-102 (241)
290 1oyz_A Hypothetical protein YI 44.7 1.9E+02 0.0066 26.7 20.9 144 52-200 36-185 (280)
291 4b4t_R RPN7, 26S proteasome re 44.5 64 0.0022 32.9 8.6 95 353-447 133-238 (429)
292 2l0z_A Glycoprotein G2; zinc-b 41.4 8.6 0.00029 23.8 0.8 18 671-688 11-29 (42)
293 2nsz_A Programmed cell death p 38.1 1.3E+02 0.0045 24.4 7.9 62 354-415 10-76 (129)
294 3txn_A 26S proteasome regulato 37.6 3.2E+02 0.011 27.2 25.3 286 221-550 21-345 (394)
295 2k0q_A Putative uncharacterize 36.7 10 0.00034 26.8 0.7 22 665-686 8-29 (74)
296 4a1g_A Mitotic checkpoint seri 36.4 1.9E+02 0.0066 24.3 9.1 48 504-551 84-133 (152)
297 1n11_A Ankyrin; clathrin, BAND 35.1 3.5E+02 0.012 26.9 16.3 12 68-79 57-68 (437)
298 2ko4_A Mediator of RNA polymer 34.9 55 0.0019 23.8 4.2 39 75-113 23-62 (81)
299 4gq2_M Nucleoporin NUP120; bet 34.9 2.1E+02 0.0073 32.6 11.7 33 487-519 899-932 (950)
300 1k1a_A B-cell lymphoma 3-encod 34.5 2.4E+02 0.0084 24.9 11.1 86 129-215 13-103 (241)
301 2wvi_A Mitotic checkpoint seri 33.2 2.3E+02 0.0078 24.2 9.1 49 504-552 79-129 (164)
302 3bqo_A Telomeric repeat-bindin 32.9 2.2E+02 0.0075 25.1 8.5 62 469-530 94-162 (211)
303 2zu6_B Programmed cell death p 31.5 3.5E+02 0.012 25.8 12.6 60 385-445 169-230 (307)
304 3eu9_A Huntingtin-interacting 30.6 2.7E+02 0.0094 24.4 10.1 12 68-79 19-30 (240)
305 2d2s_A Exocyst complex compone 30.3 1.5E+02 0.0052 27.1 7.8 87 389-479 25-117 (235)
306 2ion_A PDCD4, programmed cell 30.2 1.2E+02 0.0041 25.6 6.6 62 354-415 12-78 (152)
307 1bd8_A P19INK4D CDK4/6 inhibit 29.0 2.3E+02 0.0078 23.0 8.5 146 56-214 2-156 (156)
308 3ljn_A Hypothetical protein; a 28.0 2.4E+02 0.0083 27.2 9.8 15 464-478 252-266 (364)
309 3ljn_A Hypothetical protein; a 27.7 4.2E+02 0.014 25.5 11.8 23 132-154 91-113 (364)
310 2pk8_A Uncharacterized protein 27.3 46 0.0016 25.0 2.9 29 576-604 13-41 (103)
311 2d2s_A Exocyst complex compone 27.1 2E+02 0.0068 26.3 8.0 88 92-182 23-116 (235)
312 3aji_A 26S proteasome non-ATPa 25.7 3.4E+02 0.012 23.8 10.4 105 68-182 16-128 (231)
313 3eiq_C Programmed cell death p 25.3 4.9E+02 0.017 25.5 16.8 25 385-409 220-244 (358)
314 2r9g_A AAA ATPase, central reg 25.0 2.7E+02 0.0093 24.6 7.9 62 286-348 16-85 (204)
315 4b4t_S RPN3, 26S proteasome re 25.0 1.6E+02 0.0056 30.5 7.6 62 418-479 232-296 (523)
316 2p1h_A APAF-1, apoptotic prote 24.9 1.3E+02 0.0043 22.7 5.4 66 238-303 24-89 (94)
317 3ygs_P Procaspase 9; apoptosis 24.7 83 0.0028 24.1 4.2 39 69-108 51-89 (97)
318 3jxi_A Vanilloid receptor-rela 24.4 2.2E+02 0.0076 25.7 8.3 53 96-148 11-72 (260)
319 3twr_A Tankyrase-2; ankyrin re 23.8 3E+02 0.01 22.5 8.5 106 68-182 18-130 (165)
320 3twe_A Alpha4H; unknown functi 23.6 80 0.0027 16.7 2.5 17 578-594 3-19 (27)
321 3ygs_P Procaspase 9; apoptosis 23.2 1.2E+02 0.0039 23.3 4.8 38 365-402 51-88 (97)
322 3esl_A Checkpoint serine/threo 23.0 4E+02 0.014 23.6 9.7 66 384-451 82-148 (202)
323 1ug3_A EIF4GI, eukaryotic prot 22.6 5.3E+02 0.018 24.9 11.3 59 254-312 15-77 (339)
324 2zu6_B Programmed cell death p 22.2 2.3E+02 0.0077 27.2 7.7 65 253-317 169-238 (307)
325 3eu9_A Huntingtin-interacting 21.2 4.1E+02 0.014 23.2 11.8 48 133-184 17-66 (240)
326 4gq2_M Nucleoporin NUP120; bet 20.6 7.1E+02 0.024 28.2 12.7 48 318-365 899-950 (950)
327 3aji_A 26S proteasome non-ATPa 20.4 4.3E+02 0.015 23.0 10.0 84 94-182 10-95 (231)
328 2lo3_A SAGA-associated factor 20.2 35 0.0012 21.3 0.9 11 645-655 16-26 (44)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-43 Score=392.82 Aligned_cols=506 Identities=10% Similarity=-0.007 Sum_probs=402.4
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHH
Q 036237 29 KFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALT 108 (689)
Q Consensus 29 ~~c~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 108 (689)
..|..+......|......++...+.+ .+...+.+ .|.+..++..|+.++ .+++..|+.++..|.+.|++++|+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 105 (597)
T 2xpi_A 31 MTPPSMGALNANNSNSQLSTLTISPMT--YLANNTST--DGSFLKERNAQNTDS-LSREDYLRLWRHDALMQQQYKCAAF 105 (597)
T ss_dssp --------------CTTSCGGGGCGGG--GGC------------------------CHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCccHHHHhhccccccccceeechhh--hhcccccc--cCccCCCCCccccch-HHHHHHHHHHHHHHHHccCchHHHH
Confidence 334444444555554444443333222 22334566 788899999999998 8999999999999999999999999
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC--
Q 036237 109 LFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-- 186 (689)
Q Consensus 109 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 186 (689)
+|++|.. ..||..++..++.+|.+.|++++|..+|+.+... +++..+++.++.+|.++|++++|.++|+++...
T Consensus 106 ~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 181 (597)
T 2xpi_A 106 VGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRK 181 (597)
T ss_dssp HHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-
T ss_pred HHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccc
Confidence 9999985 4678899999999999999999999999988654 688999999999999999999999999965433
Q ss_pred -----------------CeehHHHHHHHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHH--H-Hh
Q 036237 187 -----------------DLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIARE--I-FY 243 (689)
Q Consensus 187 -----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~--~-~~ 243 (689)
+..+|+.++.+|.+.|++++|+++|++|.+ | +...+..+...+...+..+.+.. + +.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 261 (597)
T 2xpi_A 182 DEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYS 261 (597)
T ss_dssp ---------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTH
T ss_pred cccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCc
Confidence 378999999999999999999999999976 3 33445555544443333222211 1 22
Q ss_pred hcCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChh
Q 036237 244 RMPNRN----LVSWNAMINGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317 (689)
Q Consensus 244 ~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 317 (689)
.+...+ ..+|+.++.+|.+.|++++|.++|+++.. +++.+|+.++.+|.+.|++++|+++|+++.+.+ +.+..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 340 (597)
T 2xpi_A 262 TYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLD 340 (597)
T ss_dssp HHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCT
T ss_pred ccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHH
Confidence 222222 44566778899999999999999999987 799999999999999999999999999998765 34778
Q ss_pred hHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHH
Q 036237 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGM 394 (689)
Q Consensus 318 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 394 (689)
++..++.++...|++++|..++..+.+.. +.+..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI 419 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999664 56788999999999999999999999998753 568899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036237 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (689)
.|++++|+++|++|.+.+ +++..++..++.+|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.+
T Consensus 420 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 420 EGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp HTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999853 447789999999999999999999999999853 33468899999999999999999999
Q ss_pred HHHhC-------CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 475 TIESM-------PMRPN--FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 475 ~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
+|+++ +..|+ ..+|..++.+|.+.|++++|+..++++++++|+++.+|..++.+|.+.|++++|.++++++
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99987 44777 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhC
Q 036237 546 KKR 548 (689)
Q Consensus 546 ~~~ 548 (689)
.+.
T Consensus 577 l~~ 579 (597)
T 2xpi_A 577 LAI 579 (597)
T ss_dssp HHH
T ss_pred Hhc
Confidence 874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-38 Score=356.14 Aligned_cols=474 Identities=7% Similarity=-0.020 Sum_probs=404.9
Q ss_pred CCchHHHHHhhcccccCCCCHHHHHHHHhcccC-CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHH
Q 036237 51 YHSGISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129 (689)
Q Consensus 51 ~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 129 (689)
+++..++.++..|.+ .|++++|..+|+++.. .|+..+|+.++.+|.+.|++++|..+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALM--QQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--ccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 578889999999999 9999999999999864 688899999999999999999999999998653 67889999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CeehH
Q 036237 130 KGAARLGAIKEGKQIHGLVFKL---------------GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK---DLVSW 191 (689)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~ 191 (689)
.++.+.|++++|.++|+.+... |.+++..+|+.++.+|.+.|++++|.++|++|.+. +...|
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853211 22346889999999999999999999999999753 33455
Q ss_pred HHHHHHHHhCCChHHHHHH---HhhCCCC----CcchHHHHHHHHHhCCChHHHHHHHhhcCc--CCcchHHHHHHHHHh
Q 036237 192 NCLIDGYVKKGEVEVAMKL---FDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPN--RNLVSWNAMINGYMK 262 (689)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~---~~~m~~~----d~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 262 (689)
..+...+...+..+.+... +..+... +..+|+.++..|.+.|++++|.++|+++.+ ++..+++.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 5555544443332222111 2222221 334567778889999999999999999988 789999999999999
Q ss_pred cCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHH
Q 036237 263 AGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339 (689)
Q Consensus 263 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 339 (689)
.|++++|.++|+++.. .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..++..+...+.+.|++++|.+++
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999863 377899999999999999999999999998542 456788899999999999999999999
Q ss_pred HHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 036237 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416 (689)
Q Consensus 340 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 416 (689)
..+.+.. +.+..+++.++.+|.+.|++++|.++|+++.. .+..+|+.++.+|.+.|++++|+++|++|.+.. +.+
T Consensus 397 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 474 (597)
T 2xpi_A 397 SKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYD 474 (597)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 9998864 34678999999999999999999999998764 477899999999999999999999999999853 346
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 036237 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDY---GIEPT--IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWM 489 (689)
Q Consensus 417 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 489 (689)
..+|..++..+.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 7899999999999999999999999998532 56787 789999999999999999999999987 2334 789999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 036237 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531 (689)
Q Consensus 490 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 531 (689)
.+..+|...|++++|...++++++++|+++..+..|+++|..
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.6e-25 Score=235.16 Aligned_cols=367 Identities=14% Similarity=0.132 Sum_probs=242.7
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 036237 95 KCYVFNQRSHEALTLFCDLLDRFLLPDN-FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173 (689)
Q Consensus 95 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 173 (689)
..+.+.|++++|.+.|.++.+. .|+. ..+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3455566666666666665553 2333 233334444455566666666666655543 44555566666666666666
Q ss_pred HHHHHHHhhCCC--C-CeehHHHHHHHHHhCCChHHHHHHHhhCCC--CCcchHHHHHHHHHhCCChHHHHHHHhhcCcC
Q 036237 174 DLGRRVFDAMDD--K-DLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248 (689)
Q Consensus 174 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 248 (689)
++|...|+++.+ | +..+|..+..++.+.|++++|+..|+++.+ |+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------------------------ 133 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD------------------------------ 133 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT------------------------------
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------
Confidence 666666555431 2 222344444444444444444444444322 11
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHH
Q 036237 249 NLVSWNAMINGYMKAGDVDSACELFDDME---IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325 (689)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 325 (689)
....+..+...|...|++++|.+.|+++. ..+..+|+.+...|...|++++|+..|+++.+.+ |+
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~---------- 201 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN---------- 201 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT----------
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC----------
Confidence 12233334444444444444444444433 1245566666666666666666666666665422 22
Q ss_pred HHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHH
Q 036237 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQAL 402 (689)
Q Consensus 326 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 402 (689)
+...+..+...+...|++++|...|++... .+..+|..++..|.+.|++++|+
T Consensus 202 ------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 257 (388)
T 1w3b_A 202 ------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257 (388)
T ss_dssp ------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 233445555666666666666666665542 35678888899999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 036237 403 DLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-P 480 (689)
Q Consensus 403 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 480 (689)
+.|+++.+. .|+ ..++..+..++...|++++|...|+.+.+. .+++...+..+...|.+.|++++|.+.++++ .
T Consensus 258 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 258 DTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999884 454 568888999999999999999999999853 3456888999999999999999999999986 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 481 MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 481 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
..| +..+|..+...+.+.|++++|...+++++++.|+++.+|..++.+|...|+
T Consensus 334 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 445 577999999999999999999999999999999999999999999887764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.2e-27 Score=254.47 Aligned_cols=184 Identities=11% Similarity=0.100 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHccc---------chhhHHHHHHHHHHhCCccchh
Q 036237 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA---------VLNKGRWMHSYIVKNGFVVDGV 352 (689)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~i~~~~~~~g~~~~~~ 352 (689)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|+..+ .++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4688889999999999999999999999999999999999999998654 4678999999999999999999
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036237 353 LGTLLIQMYSKCGSIESALTVFRAISK----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 428 (689)
+|++||.+|++.|++++|.++|++|.. ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999974 7899999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 036237 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466 (689)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 466 (689)
+.|++++|.++|++|. +.+..|+..+|+.+++.+...
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999998 459999999999999988764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=3.7e-24 Score=224.80 Aligned_cols=344 Identities=13% Similarity=0.095 Sum_probs=279.2
Q ss_pred HHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCc---CCcchHHHHHHHHHhcCCHHHH
Q 036237 196 DGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPN---RNLVSWNAMINGYMKAGDVDSA 269 (689)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 269 (689)
..+.+.|++++|++.+.++.+ | +...+..+...+...|++++|...++...+ .+..+|..+...|.+.|++++|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 344555666666666655532 3 233455555566667777777776666554 2355677777778888888888
Q ss_pred HHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChh-hHHHHHHHHHcccchhhHHHHHHHHHHh
Q 036237 270 CELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA-TLVSALSAVAGLAVLNKGRWMHSYIVKN 345 (689)
Q Consensus 270 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 345 (689)
...|+++.. .+..+|..+..++.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|...+..+.+.
T Consensus 87 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 888777652 35567888889999999999999999888864 45544 4455666778889999999999988887
Q ss_pred CCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 036237 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFI 421 (689)
Q Consensus 346 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 421 (689)
. +.+..++..+...|.+.|++++|.+.|+++.. .+...|..+...+...|++++|+..|++... ..|+ ..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHHH
Confidence 5 34577888999999999999999999998864 4567899999999999999999999999987 4565 66888
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 036237 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNH 498 (689)
Q Consensus 422 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~ 498 (689)
.+..++...|++++|...|+.+.+ ..| +...|..++..|.+.|++++|.+.++++- .+++..+|..+...+...
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 999999999999999999999984 345 47889999999999999999999999872 345788999999999999
Q ss_pred CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 499 g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|++++|+..+++++++.|+++.++..++.+|.+.|++++|...++++.+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999986
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.2e-25 Score=240.88 Aligned_cols=200 Identities=11% Similarity=0.095 Sum_probs=171.3
Q ss_pred HHHHHHHHHhccCCCCcCh-hhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCC---------H
Q 036237 298 MEALELLETMLIGDVLPND-ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS---------I 367 (689)
Q Consensus 298 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~ 367 (689)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4456677788777776544 45788999999999999999999999999999999999999999987665 7
Q ss_pred HHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 036237 368 ESALTVFRAISK----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443 (689)
Q Consensus 368 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 443 (689)
++|.++|++|.. ||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999974 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 036237 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM---PMRPNFVIWMSLLSGARNH 498 (689)
Q Consensus 444 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~ 498 (689)
.+ .|+.||..+|++||++|++.|++++|.+++++| ...|+..||+.++..++..
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 94 599999999999999999999999999999999 5789999999999988764
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=4e-22 Score=218.75 Aligned_cols=422 Identities=10% Similarity=0.013 Sum_probs=253.6
Q ss_pred ChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036237 86 SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS 165 (689)
Q Consensus 86 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 165 (689)
....|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++.+++.+ +.+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34567888889999999999999999999864 3366788888899999999999999999999887 567888999999
Q ss_pred HHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCC------CcchHHHHHHHHHhCCChHHHH
Q 036237 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR------DLFSWTCLVDGFSKCGKVEIAR 239 (689)
Q Consensus 166 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------d~~~~~~li~~~~~~g~~~~A~ 239 (689)
.|.+.|++++|...|+.+. .++...+..+..+...+...+|...++.+... ........+..+....+.+.+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999999999997443 33333444455666777778888888888652 2223344555566677777777
Q ss_pred HHHhhcCcCCcc---hHHHHHHHHHhc--------CCHHHHHHHHHhcCCC---C-------hHHHHHHHHHHHHcCChH
Q 036237 240 EIFYRMPNRNLV---SWNAMINGYMKA--------GDVDSACELFDDMEIR---D-------LITWNSMIAGYELNGRFM 298 (689)
Q Consensus 240 ~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~~~~~---~-------~~~~~~li~~~~~~g~~~ 298 (689)
..+......+.. ....+...+... |++++|..+|+++.+. + ..+|..+...+...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 766666554433 333333333222 3555666666555432 1 113444445555555666
Q ss_pred HHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcC
Q 036237 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378 (689)
Q Consensus 299 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 378 (689)
+|+..|+++... .|+...+..+...+...|+++.|...+..+.+..
T Consensus 261 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------------------- 306 (537)
T 3fp2_A 261 DAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-------------------------------- 306 (537)
T ss_dssp HHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--------------------------------
Confidence 666666555542 2333344444444444444444444444444332
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 036237 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458 (689)
Q Consensus 379 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 458 (689)
..+..+|..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 383 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTF 383 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 1234455555555666666666666666655532 112345555555566666666666666665532 1223445555
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHhhcCCCCch
Q 036237 459 LVDILCRTGYLEEAKSTIESM----P----MRPNFVIWMSLLSGARNH----------GNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~----~----~~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
+...|.+.|++++|...++++ + .......+..+...+... |++++|+..++++++..|+++.
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence 666666666666666666554 0 111222233444455555 6677777777777777776666
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 521 CYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 521 ~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
++..++.+|.+.|++++|.+.+++..+
T Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 464 AKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777777777777777777777766655
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5e-22 Score=216.51 Aligned_cols=431 Identities=11% Similarity=-0.043 Sum_probs=251.3
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036237 88 VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMY 167 (689)
Q Consensus 88 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 167 (689)
..|......+.+.|++++|+..|+++.+.. ||..+|..+..++...|++++|...++.+++.+ +.+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456666777778888888888888887754 677777778888888888888888888888775 45566777888888
Q ss_pred HhcCChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHHHhhCCC----CCcchHHHH---HHHHHhCCChHH
Q 036237 168 AKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCL---VDGFSKCGKVEI 237 (689)
Q Consensus 168 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~l---i~~~~~~g~~~~ 237 (689)
.+.|++++|...|+++.. .+......++..+........+.+.+..+.. ++...+..- ............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 888888888888876643 2333344444444433322222222221111 000000000 000000111111
Q ss_pred HHHHHhhcCc---------C-CcchHHHHHHHHHh---cCCHHHHHHHHHhcCC----------------C-ChHHHHHH
Q 036237 238 AREIFYRMPN---------R-NLVSWNAMINGYMK---AGDVDSACELFDDMEI----------------R-DLITWNSM 287 (689)
Q Consensus 238 A~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~l 287 (689)
....+..... + +...+..+...+.. .|++++|...|+++.. + +..+|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1111111110 1 12223333333333 5666666666665443 1 34566667
Q ss_pred HHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCH
Q 036237 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 367 (689)
...+...|++++|+..|+++.... |+...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 777777777777777777776543 335556666666777777777777777666553 23455666666777777777
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 368 ESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 368 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
++|...|+++.. .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777766542 345566666777777777777777777766532 2234456666666777777777777776665
Q ss_pred HhcCCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036237 445 NDYGIEPT----IEHYGCLVDILCR---TGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515 (689)
Q Consensus 445 ~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 515 (689)
....-.++ ...+..+...|.+ .|++++|...++++ ... .+..+|..+...+...|++++|...+++++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 42222222 2366667777777 77777777776664 122 245566667777777777777777777777777
Q ss_pred CCCchhHHHH
Q 036237 516 PDTIGCYVVL 525 (689)
Q Consensus 516 p~~~~~~~~L 525 (689)
|+++..+..+
T Consensus 480 ~~~~~~~~~~ 489 (514)
T 2gw1_A 480 RTMEEKLQAI 489 (514)
T ss_dssp SSHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 7665554444
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7e-22 Score=215.36 Aligned_cols=419 Identities=10% Similarity=-0.074 Sum_probs=317.0
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCeehHHHHHHHHH
Q 036237 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYV 199 (689)
Q Consensus 123 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~ 199 (689)
..+......+...|++++|...|..+++.. |+..++..+..+|.+.|++++|...|+++.+ .+..+|..+..+|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 345666777889999999999999999986 6889999999999999999999999997753 35568889999999
Q ss_pred hCCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHhhcCcC----CcchHHH---HHHHHHhcCCHHHH
Q 036237 200 KKGEVEVAMKLFDEMPD---RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNA---MINGYMKAGDVDSA 269 (689)
Q Consensus 200 ~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~---li~~~~~~g~~~~A 269 (689)
+.|++++|+..|+++.. ++......++..+........+.+.+..+... +...... .............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 99999999999988754 23444445555444433333333333222110 0000000 00001111111112
Q ss_pred HHHHHhcC---------CC-ChHHHHHHHHHHHH---cCChHHHHHHHHHhcc-----CCCCc--------ChhhHHHHH
Q 036237 270 CELFDDME---------IR-DLITWNSMIAGYEL---NGRFMEALELLETMLI-----GDVLP--------NDATLVSAL 323 (689)
Q Consensus 270 ~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll 323 (689)
...+.... .+ +...|......+.. .|++++|+.+|+++.. ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 22222221 11 24455555555554 8999999999999987 31122 345667778
Q ss_pred HHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHH
Q 036237 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQ 400 (689)
Q Consensus 324 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 400 (689)
..+...|++++|...+..+.+.... ..++..+...|...|++++|.+.|+++.. .+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8889999999999999999998755 88889999999999999999999998765 366789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 036237 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM- 479 (689)
Q Consensus 401 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 479 (689)
|+..|++..+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999853 234668888899999999999999999999853 2335788999999999999999999999886
Q ss_pred ---CCCCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 480 ---PMRPN----FVIWMSLLSGARN---HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 480 ---~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+..++ ...|..+...+.. .|+++.|...++++++..|+++.++..++.+|.+.|++++|...+++..+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 4589999999999 999999999999999999999999999999999999999999999998874
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=6.3e-21 Score=204.19 Aligned_cols=322 Identities=13% Similarity=0.080 Sum_probs=227.6
Q ss_pred CeehHHHHHHHHHhCCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhc
Q 036237 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPD---RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKA 263 (689)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 263 (689)
+...|..+...|.+.|++++|+.+|+++.+ .+..+|..+..++...|++++|...|+++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 344566666666666666666666666543 234455555555555666666655555554311
Q ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcCh----hhHHHH------------HHHHH
Q 036237 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND----ATLVSA------------LSAVA 327 (689)
Q Consensus 264 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~a~~ 327 (689)
..+..+|..+...|.+.|++++|++.|+++... .|+. ..+..+ ...+.
T Consensus 91 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 91 --------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113344445555555555555555555555442 2222 122222 33356
Q ss_pred cccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHH
Q 036237 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDL 404 (689)
Q Consensus 328 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 404 (689)
..|++++|...+..+.+.. +.+..++..+..+|.+.|++++|.+.|+++.. .+..+|..++..|...|++++|+..
T Consensus 155 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6677777777777777654 34667788888899999999999999988764 5678999999999999999999999
Q ss_pred HHHHHHCCCCCCHHH-HHHH------------HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhc
Q 036237 405 FNKMCRMGMKPTAIT-FIGV------------LNACSHAGLVNDGRRYFNMMINDYGIEPT-----IEHYGCLVDILCRT 466 (689)
Q Consensus 405 ~~~m~~~g~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~ 466 (689)
|+++.. ..|+... +..+ ..+|.+.|++++|..+|+.+.. +.|+ ..+|..++.+|.+.
T Consensus 234 ~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 234 VRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHC
Confidence 999987 4565443 3333 7889999999999999999985 3454 45889999999999
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHH------------HHHHhc
Q 036237 467 GYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS------------NIYAAA 532 (689)
Q Consensus 467 g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~------------~~~~~~ 532 (689)
|++++|...++++ ...| +..+|..+..+|...|++++|...++++++++|+++.++..++ +.|...
T Consensus 309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 9999999999986 3344 6889999999999999999999999999999999999999998 446666
Q ss_pred C-----CcchHHHHHHH
Q 036237 533 G-----QWDKVSEVREM 544 (689)
Q Consensus 533 g-----~~~~A~~~~~~ 544 (689)
| +.+++.+.+++
T Consensus 389 g~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp CSSTTCCTTHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHH
Confidence 6 44455555554
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1.5e-20 Score=201.24 Aligned_cols=370 Identities=12% Similarity=0.021 Sum_probs=238.9
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHHHhhCCC--
Q 036237 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD-- 216 (689)
Q Consensus 142 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 216 (689)
...+..++... +.+...+..+...|.+.|++++|..+|+++.+ .+..+|..+..+|.+.|++++|+..|+++.+
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 33444444443 56778899999999999999999999998763 4678899999999999999999999999865
Q ss_pred C-CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCc------chHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHH
Q 036237 217 R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL------VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289 (689)
Q Consensus 217 ~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 289 (689)
| +..++..+..++...|++++|...|+++.+.++ ..+..++..+... .+..+..
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~ 151 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQAL 151 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHH
Confidence 3 566888888889999999999999988876443 4444444431111 1122233
Q ss_pred HHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHH
Q 036237 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369 (689)
Q Consensus 290 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 369 (689)
.+...|++++|+..|+++.... +.+...+..+...+...|++++|..++..+.+.. +.+..++..+...|.+.|++++
T Consensus 152 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 152 NAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555554421 1233444455555555555555555555555442 2345556666666666666666
Q ss_pred HHHHHHhcCC---CChhhHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhc
Q 036237 370 ALTVFRAISK---KKVGHWTAM------------IVGLGMHGMATQALDLFNKMCRMGMKPT-----AITFIGVLNACSH 429 (689)
Q Consensus 370 A~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~ 429 (689)
|.+.|+++.. .+...|..+ +..|...|++++|+..|+++.+ ..|+ ...+..+..++.+
T Consensus 230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHH
Confidence 6666665543 223334333 7778888888888888888877 3455 3356777778888
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------H
Q 036237 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSG------------A 495 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~------------~ 495 (689)
.|++++|...++.+... .+.+...|..+..+|...|++++|...++++ ...| +...+..+..+ |
T Consensus 308 ~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred CCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence 88888888888887742 2234677888888888888888888888876 4445 34555555532 3
Q ss_pred HhcC-----ChHHHHHHHHH-HhhcCCCCch----------hHHHHHHHHHhcCCcch
Q 036237 496 RNHG-----NKDIGEYAANN-LIKVAPDTIG----------CYVVLSNIYAAAGQWDK 537 (689)
Q Consensus 496 ~~~g-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~L~~~~~~~g~~~~ 537 (689)
...| +.+++.+.+++ +++..|++.. .+..+..+|...|+.++
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3334 56777888886 6777776432 44556666666655544
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=2.6e-19 Score=196.19 Aligned_cols=428 Identities=9% Similarity=-0.015 Sum_probs=294.3
Q ss_pred hHHHHHhhcccccCCCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 036237 54 GISSRLLSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG 131 (689)
Q Consensus 54 ~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 131 (689)
..+..+-..|.+ .|++++|...|+++.. +.+..+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+...
T Consensus 26 ~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFT--AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHH--TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 344556667777 8999999999998754 4577889999999999999999999999999864 2356778888899
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC------CeehHHHHHHHHHhCCChH
Q 036237 132 AARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK------DLVSWNCLIDGYVKKGEVE 205 (689)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~ 205 (689)
+...|++++|...++ .+.. .|+. .+..+..+...+....|...++.+... ........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999996 4432 2322 223344555666678899999888642 2223456677788888888
Q ss_pred HHHHHHhhCCCCCcc---hHHHHHHHHHhC--------CChHHHHHHHhhcCcCCc----------chHHHHHHHHHhcC
Q 036237 206 VAMKLFDEMPDRDLF---SWTCLVDGFSKC--------GKVEIAREIFYRMPNRNL----------VSWNAMINGYMKAG 264 (689)
Q Consensus 206 ~A~~~~~~m~~~d~~---~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g 264 (689)
.+...+......+.. ....+...+... |++++|..+++++.+.++ .++..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 888888887765544 333343333332 478899999999887432 25777788899999
Q ss_pred CHHHHHHHHHhcC--CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHH
Q 036237 265 DVDSACELFDDME--IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342 (689)
Q Consensus 265 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 342 (689)
++++|...|+... .|+...|..+...|...|++++|++.|+++.... +.+..++..+...+...|++++|...+..+
T Consensus 258 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 258 NLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999876 3457889999999999999999999999998643 223444555555555555555555555555
Q ss_pred HHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036237 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422 (689)
Q Consensus 343 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 422 (689)
.+.. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..
T Consensus 337 ~~~~--------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 383 (537)
T 3fp2_A 337 QSLN--------------------------------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTF 383 (537)
T ss_dssp HHHC--------------------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred HHhC--------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 4432 1234456666666666777777777777666532 223446666
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhc----------CCHHHHHHHHHhC-CCC-CCHH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEP----TIEHYGCLVDILCRT----------GYLEEAKSTIESM-PMR-PNFV 486 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~~-~~~-p~~~ 486 (689)
+...+...|++++|...|+.+.+...-.+ ....+..+...|.+. |++++|...++++ ... .+..
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence 66677777777777777776653211111 122244455666666 8888888888776 223 3567
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHH
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 523 (689)
.|..+...+...|++++|...+++++++.|+++....
T Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 464 AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 8888999999999999999999999999998765544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=1.4e-17 Score=171.73 Aligned_cols=302 Identities=13% Similarity=0.041 Sum_probs=186.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhcCc---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHc
Q 036237 221 SWTCLVDGFSKCGKVEIAREIFYRMPN---RNLVSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELN 294 (689)
Q Consensus 221 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 294 (689)
.+..+...+...|++++|...|+++.+ .++.++..+...|...|++++|...|+++.+ .+...|..+...|...
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 344444555555555555555555443 2244555566666666666666666665542 2556677777777777
Q ss_pred CChHHHHHHHHHhccCCCCc---C-hhhHHHH------------HHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHH
Q 036237 295 GRFMEALELLETMLIGDVLP---N-DATLVSA------------LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358 (689)
Q Consensus 295 g~~~~A~~~~~~m~~~g~~p---~-~~t~~~l------------l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 358 (689)
|++++|+..|+++.+. .| + ...+..+ ...+...|++++|...+..+.+.. +.+..++..+.
T Consensus 85 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 161 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRA 161 (359)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 7777777777777654 23 2 2222222 345566667777777776666654 23456666677
Q ss_pred hhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHH------------H
Q 036237 359 QMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFI------------G 422 (689)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~------------~ 422 (689)
..|...|++++|...|+++.. .+...|..+...|...|++++|+..|++..+. .|+.. .+. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHH
Confidence 777777777777777776654 34566777777777777777777777777663 34322 221 2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPT-I----EHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGA 495 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 495 (689)
+...+...|++++|...++.+... .|+ . ..+..+...|...|++++|...+++. ...| +..+|..+...+
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 244566677777777777777642 233 1 23445667777777777777777665 2223 566777777777
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
...|++++|...++++++++|+++.....|..++.
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 77777777777777777777777666666655543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=4.1e-17 Score=168.26 Aligned_cols=294 Identities=11% Similarity=0.060 Sum_probs=245.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 036237 250 LVSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326 (689)
Q Consensus 250 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 326 (689)
+..+..+...+.+.|++++|...|+++.. .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 34677888999999999999999998763 367899999999999999999999999998753 22556788888899
Q ss_pred HcccchhhHHHHHHHHHHhCCc--cchhHHhHH------------HhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHH
Q 036237 327 AGLAVLNKGRWMHSYIVKNGFV--VDGVLGTLL------------IQMYSKCGSIESALTVFRAISK---KKVGHWTAMI 389 (689)
Q Consensus 327 ~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 389 (689)
...|++++|...+..+.+.... .+...+..+ ...+...|++++|.+.|+++.. .+...|..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999876531 244444444 5889999999999999998764 4677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHH-----------
Q 036237 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYG----------- 457 (689)
Q Consensus 390 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~----------- 457 (689)
..|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+...+. .|+ ...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999853 345678888999999999999999999999853 344 33332
Q ss_pred -HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 458 -CLVDILCRTGYLEEAKSTIESM-PMRPN-F----VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 458 -~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
.+...+.+.|++++|...++++ ...|+ . ..|..+...+...|+++.|...++++++..|+++.++..++.+|.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3367799999999999999986 22343 3 235567788999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhC
Q 036237 531 AAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 531 ~~g~~~~A~~~~~~m~~~ 548 (689)
..|++++|.+.+++..+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 999999999999998864
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=9.6e-19 Score=178.65 Aligned_cols=348 Identities=12% Similarity=0.042 Sum_probs=161.5
Q ss_pred hcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCc-
Q 036237 169 KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN- 247 (689)
Q Consensus 169 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 247 (689)
+.|++++|.++++++..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..+....+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 678889999999988655 48899999999999999999999664 5677888899999999999999997777665
Q ss_pred -CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 036237 248 -RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326 (689)
Q Consensus 248 -~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 326 (689)
+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|..+..++
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L 158 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 158 (449)
T ss_dssp ------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHH
Confidence 3467788899999999999998887753 67779999999999999999999999877 3788888899
Q ss_pred HcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 036237 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406 (689)
Q Consensus 327 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 406 (689)
.++|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|+.+++
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999988888877 367888899999999999999977777654 444445568889999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHh--ccCcHHHHHHHHHHhHHhcCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 036237 407 KMCRMGMKPT-AITFIGVLNACS--HAGLVNDGRRYFNMMINDYGIEP------TIEHYGCLVDILCRTGYLEEAKSTIE 477 (689)
Q Consensus 407 ~m~~~g~~p~-~~t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~ 477 (689)
.... ..+. ...|+.+.-+++ +.+++.+.++.|..-. .++| +...|..++-+|..-++++.|....-
T Consensus 232 ~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i---ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 232 AALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS---CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 9875 3343 335555544444 5666777777665433 5555 46789999999999999999888766
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHH-------------HHHHhcCCcchHHHHHHH
Q 036237 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS-------------NIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 478 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~-------------~~~~~~g~~~~A~~~~~~ 544 (689)
+-+ |+..--..+.....+-.+.|.-.++..--++..| ...+.|. ..+.+.|.+.-+..++..
T Consensus 307 ~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~ 381 (449)
T 1b89_A 307 NHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRS 381 (449)
T ss_dssp HST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHH
T ss_pred hCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHH
Confidence 653 2211112223333445555544444444444433 2333333 444455555555555544
Q ss_pred HHhCC
Q 036237 545 MKKRG 549 (689)
Q Consensus 545 m~~~~ 549 (689)
+.+.+
T Consensus 382 v~~~n 386 (449)
T 1b89_A 382 VQNHN 386 (449)
T ss_dssp HHTTC
T ss_pred HHHhh
Confidence 44433
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2.6e-18 Score=175.50 Aligned_cols=281 Identities=15% Similarity=0.127 Sum_probs=120.2
Q ss_pred CCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 036237 68 INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 147 (689)
.|++++|.+++++++ .|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 16 ~~~ld~A~~fae~~~-~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 16 IGNLDRAYEFAERCN-EPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC-ChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 799999999999998 665 8999999999999999999999753 6788999999999999999999998888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHH
Q 036237 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVD 227 (689)
Q Consensus 148 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~ 227 (689)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 8774 56688899999999999999999988864 67789999999999999999999999988 47999999
Q ss_pred HHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHh
Q 036237 228 GFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307 (689)
Q Consensus 228 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 307 (689)
++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+.+++..
T Consensus 157 ~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999988 378899999999999999999987777655 44444556888999999999999999988
Q ss_pred ccCCCCcChhhHHHHHHHHH--cccchhhHHHHHHHHHHhCCcc------chhHHhHHHhhHHhcCCHHHHHHH
Q 036237 308 LIGDVLPNDATLVSALSAVA--GLAVLNKGRWMHSYIVKNGFVV------DGVLGTLLIQMYSKCGSIESALTV 373 (689)
Q Consensus 308 ~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~i~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~ 373 (689)
+... +.-...|+.+.-+++ +.+.+.+..+.|. .+.++++ +..+|..++-.|...++++.|...
T Consensus 234 L~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 234 LGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 7543 223333443333333 2333333333332 1122222 344455555555555555555443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.4e-16 Score=162.30 Aligned_cols=283 Identities=9% Similarity=-0.045 Sum_probs=184.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHH
Q 036237 251 VSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327 (689)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 327 (689)
.++..+...+...|++++|.++|+++.. .+...+..++..+...|++++|+.+++++.+.. +.+...+..+...+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 3334444444444444444444444331 123334444444555555555555555554421 112333444444444
Q ss_pred ccc-chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHH
Q 036237 328 GLA-VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALD 403 (689)
Q Consensus 328 ~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 403 (689)
..| ++++|...+..+.+.. +.+...+..+...|...|++++|.+.|+++.. .+...|..+...|...|++++|++
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHH
Confidence 555 4555555555554433 22455566677777777777777777776653 345667778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 036237 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG-------IEPTIEHYGCLVDILCRTGYLEEAKSTI 476 (689)
Q Consensus 404 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (689)
.|++..+.. +.+...+..+...+...|++++|...++.+..... .+.....+..+...|.+.|++++|...+
T Consensus 181 ~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 181 FFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888887742 23456777788888888888888888888774321 1333578888999999999999999998
Q ss_pred HhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHH-HhcCCcc
Q 036237 477 ESM-PM-RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY-AAAGQWD 536 (689)
Q Consensus 477 ~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~-~~~g~~~ 536 (689)
+++ .. +.+...|..+...+...|++++|...+++++++.|+++..+..++.++ ...|+.+
T Consensus 260 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 876 22 236678889999999999999999999999999999999999999888 4555543
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=8.4e-15 Score=165.95 Aligned_cols=380 Identities=12% Similarity=0.086 Sum_probs=302.1
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHh
Q 036237 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLG--FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200 (689)
Q Consensus 123 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 200 (689)
.-....++++...|.+.++.+++++++-.+ +..+....+.|+.+..+. +........++...-+ ...+...+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 334667888999999999999999998443 124556778888887777 5666666666665333 5567888999
Q ss_pred CCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 036237 201 KGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD 280 (689)
Q Consensus 201 ~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 280 (689)
.|.+++|..+|++.... ....+.++ -..+++++|.++.++.. .+.+|..+..++.+.|++++|.+.|.+. .|
T Consensus 1062 lglyEEAf~IYkKa~~~-~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDVN-TSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred CCCHHHHHHHHHHcCCH-HHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 99999999999997522 11222232 27789999999998774 4788999999999999999999999774 67
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhh
Q 036237 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360 (689)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 360 (689)
...|..++..+.+.|++++|+++|....+.. ++....+.+..+|++.++++....+. + .++...+..+.+.
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence 8889999999999999999999999877654 44444446888999998888644442 2 3455566679999
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036237 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440 (689)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 440 (689)
|...|++++|...|..+ ..|..+...|.+.|++++|++.+++. .+..+|..+-.+|...|++..|....
T Consensus 1205 le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999986 48999999999999999999999976 35689999999999999999998876
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CChHHHHHHHHHHhhcCC
Q 036237 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 441 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p 516 (689)
.. +..++..+..++..|.+.|.+++|+.+++.. +..| ....|.-|...+.+. ++..++.+.|..-+.+.|
T Consensus 1274 l~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1274 LH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred Hh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 53 3356677889999999999999999999775 4444 445777777777665 567778888887777666
Q ss_pred -----CCchhHHHHHHHHHhcCCcchHHH
Q 036237 517 -----DTIGCYVVLSNIYAAAGQWDKVSE 540 (689)
Q Consensus 517 -----~~~~~~~~L~~~~~~~g~~~~A~~ 540 (689)
.+...+..+...|.+.|+|+.|..
T Consensus 1348 ~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1348 VLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 567788899999999999999984
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=7.7e-16 Score=166.55 Aligned_cols=349 Identities=9% Similarity=-0.043 Sum_probs=233.5
Q ss_pred cCChHHHHHHHhhCCC-CCeehHHHHHHHHHh----CCChHHHHHHHhhCCC-CCcchHHHHHHHHHh----CCChHHHH
Q 036237 170 FGEIDLGRRVFDAMDD-KDLVSWNCLIDGYVK----KGEVEVAMKLFDEMPD-RDLFSWTCLVDGFSK----CGKVEIAR 239 (689)
Q Consensus 170 ~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~d~~~~~~li~~~~~----~g~~~~A~ 239 (689)
.+++++|...|++..+ .+...+..|-..|.. .++.++|+..|++..+ .+...+..+...|.. .++.++|.
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 135 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESV 135 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 3444444444443321 233333444444444 4444444444444332 233344444445544 45555565
Q ss_pred HHHhhcCcC-CcchHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChHHHHHHHHHHHH----cCChHHHHHHHHHhcc
Q 036237 240 EIFYRMPNR-NLVSWNAMINGYMK----AGDVDSACELFDDMEI-RDLITWNSMIAGYEL----NGRFMEALELLETMLI 309 (689)
Q Consensus 240 ~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 309 (689)
..|++..+. ++..+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.. .++.++|++.|++..+
T Consensus 136 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 136 KWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 555555443 24455556666665 5666777766665543 356667777777766 6777777777777766
Q ss_pred CCCCcChhhHHHHHHHHHc----ccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHh----cCCHHHHHHHHHhcCC-C
Q 036237 310 GDVLPNDATLVSALSAVAG----LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK----CGSIESALTVFRAISK-K 380 (689)
Q Consensus 310 ~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~ 380 (689)
.| +...+..+...+.. .++.++|..++....+.| +...+..|..+|.. .++.++|.+.|++..+ .
T Consensus 216 ~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~ 289 (490)
T 2xm6_A 216 SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG 289 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC
Confidence 54 33445555555543 567777777777776654 34455667777776 7899999999988765 4
Q ss_pred ChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCC
Q 036237 381 KVGHWTAMIVGLGMH-----GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG---LVNDGRRYFNMMINDYGIEPT 452 (689)
Q Consensus 381 ~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~ 452 (689)
+...+..+...|... +++++|+..|++..+.| +...+..+...+...| +.++|.++|++..+. .+
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~ 362 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GE 362 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TC
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CC
Confidence 667888888888887 89999999999998865 4456666666776655 889999999998852 46
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCC---Cchh
Q 036237 453 IEHYGCLVDILCR----TGYLEEAKSTIESMPMRPNFVIWMSLLSGARN----HGNKDIGEYAANNLIKVAPD---TIGC 521 (689)
Q Consensus 453 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~ 521 (689)
...+..|..+|.. .+++++|...+++.-...+...+..|...+.. .++.++|...++++.+.+|+ ++.+
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a 442 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENR 442 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHH
Confidence 7788889999988 89999999999987434577888889988888 89999999999999998854 6666
Q ss_pred HHHHHHHHHh
Q 036237 522 YVVLSNIYAA 531 (689)
Q Consensus 522 ~~~L~~~~~~ 531 (689)
...|+.++..
T Consensus 443 ~~~l~~~~~~ 452 (490)
T 2xm6_A 443 NITEKKLTAK 452 (490)
T ss_dssp HHHHTTSCHH
T ss_pred HHHHHhcCHh
Confidence 6666665543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.5e-15 Score=165.94 Aligned_cols=405 Identities=10% Similarity=0.057 Sum_probs=264.7
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCeehHHHHHHH-
Q 036237 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDG- 197 (689)
Q Consensus 121 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~- 197 (689)
|...|..++.. ...|+++.|+.+++.+++.- +.+...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 45567777763 66788888888888887763 55667788888888888888888888887764 555566666642
Q ss_pred HHhCCChHHHHH----HHhhCCC------CCcchHHHHHHHHHh---------CCChHHHHHHHhhcCcCCcchHHHHHH
Q 036237 198 YVKKGEVEVAMK----LFDEMPD------RDLFSWTCLVDGFSK---------CGKVEIAREIFYRMPNRNLVSWNAMIN 258 (689)
Q Consensus 198 ~~~~g~~~~A~~----~~~~m~~------~d~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~li~ 258 (689)
....|+.++|.+ +|++... ++...|...+..... .|+++.|..+|++.++........+-.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 234566665554 5544321 233455555554433 455666666666665411111111111
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHH------hccCC---CCcCh--------hhHHH
Q 036237 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET------MLIGD---VLPND--------ATLVS 321 (689)
Q Consensus 259 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~g---~~p~~--------~t~~~ 321 (689)
.|.. ++... +..+...++. ...+++.+|..++.+ ..+.. ++|+. ..|..
T Consensus 170 ~~~~---~e~~~---------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 170 DYNK---YEEGI---------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp HHHH---HHHHH---------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred HHHH---HHHhh---------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 1111 00000 0000011110 123445666666655 22221 23331 22322
Q ss_pred HHHHHHc----ccch----hhHHHHHHHHHHhCCccchhHHhHHHhhHHh-------cCCHH-------HHHHHHHhcCC
Q 036237 322 ALSAVAG----LAVL----NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK-------CGSIE-------SALTVFRAISK 379 (689)
Q Consensus 322 ll~a~~~----~~~~----~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~ 379 (689)
.+.-... .++. +.+..+++.++... +.+..+|..++..+.+ .|+++ +|..+|++...
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 2222111 1222 35667888887763 4567788888888775 68877 89999998864
Q ss_pred ---C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-
Q 036237 380 ---K-KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA--ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT- 452 (689)
Q Consensus 380 ---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 452 (689)
| +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|+.+|+...+ ..|.
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~ 389 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTR 389 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCC
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCc
Confidence 3 577899999999999999999999999998 46653 4788888888899999999999999984 3343
Q ss_pred hhHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch----hHHHH
Q 036237 453 IEHYGCLVDI-LCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG----CYVVL 525 (689)
Q Consensus 453 ~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~L 525 (689)
...|...+.+ +...|+.++|..+|++. ...| +...|..++..+...|+.+.|..+++++++..|.++. .+...
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3334333322 34689999999999976 2334 6789999999999999999999999999998776654 66677
Q ss_pred HHHHHhcCCcchHHHHHHHHHh
Q 036237 526 SNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+......|+.+.+..+.+++.+
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7778889999999999998875
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=3.6e-14 Score=160.92 Aligned_cols=455 Identities=12% Similarity=0.110 Sum_probs=266.5
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhc-----ccCCCChhhHHHHHHHHHhCC
Q 036237 27 ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDR-----ILQHPSLVLYNLLIKCYVFNQ 101 (689)
Q Consensus 27 ~l~~c~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~-----~~~~~~~~~~~~ll~~~~~~g 101 (689)
+++-|......+..-..+++. .|+.+|+..++- .. +.=+++.++ +++..++.--...+.+|...|
T Consensus 930 li~vt~~n~l~k~~arylv~r---~d~~lW~~vl~~-----~n--~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~ag 999 (1630)
T 1xi4_A 930 LINVCNENSLFKSLSRYLVRR---KDPELWGSVLLE-----SN--PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTAD 999 (1630)
T ss_pred HHHHHhcchhHHHHHHHHHHh---cCHHHHHHHhcC-----Cc--HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCC
Confidence 444444444444444455443 466777766632 11 111233332 222223333345677777888
Q ss_pred CchHHHHHHHHhHhCCC--CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 036237 102 RSHEALTLFCDLLDRFL--LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179 (689)
Q Consensus 102 ~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 179 (689)
.+.+|++++++..-.+- .-+...-+.++.+..+. +...+.++....- ......+...+...|.+++|..+
T Consensus 1000 lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~eIA~Iai~lglyEEAf~I 1071 (1630)
T 1xi4_A 1000 LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-------NYDAPDIANIAISNELFEEAFAI 1071 (1630)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHHHHHHHHhCCCHHHHHHH
Confidence 88888888887773311 01223344455444444 4455555444432 11233456666677777777777
Q ss_pred HhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHH
Q 036237 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING 259 (689)
Q Consensus 180 ~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 259 (689)
|++... .....+.++. ..|++++|.++.++.. +..+|..+..++...|++++|...|.+. .+...|..++..
T Consensus 1072 YkKa~~-~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~ 1143 (1630)
T 1xi4_A 1072 FRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQA 1143 (1630)
T ss_pred HHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHH
Confidence 777641 1111222222 5677777777777653 3556777777777777777777777654 556667777777
Q ss_pred HHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHH
Q 036237 260 YMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337 (689)
Q Consensus 260 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 337 (689)
+.+.|++++|.+.|....+ +++...+.++.+|++.+++++...+. . .|+...+..+...|...|++++|..
T Consensus 1144 ~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~ 1216 (1630)
T 1xi4_A 1144 ANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKL 1216 (1630)
T ss_pred HHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 7777777777777765442 23333445777777777776433322 1 3455566667777777777777777
Q ss_pred HHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 036237 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417 (689)
Q Consensus 338 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 417 (689)
+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+..+|...|++..|...... +..+.
T Consensus 1217 ~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~ 1280 (1630)
T 1xi4_A 1217 LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHA 1280 (1630)
T ss_pred HHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCH
Confidence 77764 36677777777777777777777766 4556777777777777777777665543 22344
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh--cCCHHHHHHHHHh-CCCCC------CHHH
Q 036237 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCR--TGYLEEAKSTIES-MPMRP------NFVI 487 (689)
Q Consensus 418 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~--~g~~~~A~~~~~~-~~~~p------~~~~ 487 (689)
..+..++..|.+.|.+++|+.+++... ++.|. ...|+-|..+|++ -+++.|+.++|.+ +.++| +...
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~l 1357 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHL 1357 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHH
Confidence 455566777777777777777776665 44443 4555555555554 3455666665554 33222 4556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh------------cCCCCchhHHHHHHHHHhcC
Q 036237 488 WMSLLSGARNHGNKDIGEYAANNLIK------------VAPDTIGCYVVLSNIYAAAG 533 (689)
Q Consensus 488 ~~~ll~~~~~~g~~~~a~~~~~~~~~------------~~p~~~~~~~~L~~~~~~~g 533 (689)
|..+...|.+.|+++.|....-.-.. ..+.++..|...+.-|....
T Consensus 1358 W~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1358 WAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 77777777777777776632211111 13456666666666665555
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=5.2e-17 Score=168.58 Aligned_cols=272 Identities=13% Similarity=0.037 Sum_probs=181.8
Q ss_pred CCChHHHHH-HHhhcCcC-------CcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHH
Q 036237 232 CGKVEIARE-IFYRMPNR-------NLVSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEA 300 (689)
Q Consensus 232 ~g~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 300 (689)
.|++++|.. .+.+..+. +...+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 355555555 55544331 123344555555555555555555555432 2344455555555555555555
Q ss_pred HHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC
Q 036237 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380 (689)
Q Consensus 301 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 380 (689)
++.|+++.+ .. +.+..++..+...|...|++++|.+.|+++...
T Consensus 118 ~~~~~~al~-----------------------------------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 118 ISALRRCLE-----------------------------------LK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHHHHH-----------------------------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-----------------------------------cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555543 32 223444444555555555555555555544321
Q ss_pred ---ChhhH----------------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHH
Q 036237 381 ---KVGHW----------------TAMIVGLGMHGMATQALDLFNKMCRMGMKPT---AITFIGVLNACSHAGLVNDGRR 438 (689)
Q Consensus 381 ---~~~~~----------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~ 438 (689)
+...+ ..+...+ ..|++++|+..|+++.+. .|+ ..++..+...+...|++++|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 162 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp STTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 11111 1233334 889999999999999884 444 6788889999999999999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 439 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
.|+.+... .+.+...+..+...|.+.|++++|...++++ ... .+...|..+...+...|++++|...+++++++.|
T Consensus 239 ~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 239 CFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99998852 2334788999999999999999999999986 233 4678999999999999999999999999999988
Q ss_pred CC-----------chhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 517 DT-----------IGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 517 ~~-----------~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
++ +.++..++.+|...|++++|..++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 77 78999999999999999999988763
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=2.5e-16 Score=160.50 Aligned_cols=264 Identities=11% Similarity=0.033 Sum_probs=227.5
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHH
Q 036237 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358 (689)
Q Consensus 279 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 358 (689)
.++..+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..++..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 366678888899999999999999999998753 2344556667788899999999999999999875 44677888899
Q ss_pred hhHHhcC-CHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 036237 359 QMYSKCG-SIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434 (689)
Q Consensus 359 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 434 (689)
..|...| ++++|.+.|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998875 356789999999999999999999999999853 223567777889999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCChHH
Q 036237 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-----------MRPNFVIWMSLLSGARNHGNKDI 503 (689)
Q Consensus 435 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~ll~~~~~~g~~~~ 503 (689)
+|...++.+.. ..+.+...+..+...|.+.|++++|...++++- ...+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999984 233447889999999999999999999998761 13346789999999999999999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|+..+++++++.|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999987654
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=2.3e-15 Score=164.62 Aligned_cols=407 Identities=10% Similarity=0.045 Sum_probs=288.3
Q ss_pred CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 036237 84 HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL 163 (689)
Q Consensus 84 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 163 (689)
+.+...|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|+++++.. |++..|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 347789999998 578999999999999999762 3355678889999999999999999999999874 677788877
Q ss_pred HHH-HHhcCChHHHHH----HHhhCC------CCCeehHHHHHHHHHh---------CCChHHHHHHHhhCCC-CCc---
Q 036237 164 VSM-YAKFGEIDLGRR----VFDAMD------DKDLVSWNCLIDGYVK---------KGEVEVAMKLFDEMPD-RDL--- 219 (689)
Q Consensus 164 i~~-~~~~g~~~~A~~----~~~~m~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~-~d~--- 219 (689)
+.. ....|+++.|.+ +|+... ..+...|...+....+ .|+++.|..+|++..+ |+.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 753 345688887765 666542 1356678888877665 7899999999999876 322
Q ss_pred chHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHh-------cC------CCC------
Q 036237 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD-------ME------IRD------ 280 (689)
Q Consensus 220 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~------~~~------ 280 (689)
..|..........|. ..+..++.. +.++++.|..++.. +. .++
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 123222211111110 111111111 22344555544443 11 111
Q ss_pred --hHHHHHHHHHHHHc----CCh----HHHHHHHHHhccCCCCcChhhHHHHHHHHHc-------ccchh-------hHH
Q 036237 281 --LITWNSMIAGYELN----GRF----MEALELLETMLIGDVLPNDATLVSALSAVAG-------LAVLN-------KGR 336 (689)
Q Consensus 281 --~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~ 336 (689)
...|...+...... ++. ++|+.+|++.+... +-+...|......+.+ .|+++ +|.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 24666655433332 222 37778888887642 2345556666665554 68876 888
Q ss_pred HHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--C-Ch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036237 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--K-KV-GHWTAMIVGLGMHGMATQALDLFNKMCRMG 412 (689)
Q Consensus 337 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 412 (689)
.+++..++.-.+.+..++..++..+.+.|++++|.++|+++.. | +. ..|...+..+.+.|+.++|.++|++..+.
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~- 385 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED- 385 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 9998888633455688899999999999999999999998764 3 33 47999999999999999999999999874
Q ss_pred CCCC-HHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--
Q 036237 413 MKPT-AITFIGVLNA-CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM----PMRPN-- 484 (689)
Q Consensus 413 ~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-- 484 (689)
.|+ ...|...... +...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 343 2333332222 335899999999999998542 234788999999999999999999999986 22332
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 458988898889999999999999999998884
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=2.7e-16 Score=163.11 Aligned_cols=289 Identities=13% Similarity=0.032 Sum_probs=175.7
Q ss_pred hCCChHHHHH-HHhhCCC--C-----CcchHHHHHHHHHhCCChHHHHHHHhhcCc---CCcchHHHHHHHHHhcCCHHH
Q 036237 200 KKGEVEVAMK-LFDEMPD--R-----DLFSWTCLVDGFSKCGKVEIAREIFYRMPN---RNLVSWNAMINGYMKAGDVDS 268 (689)
Q Consensus 200 ~~g~~~~A~~-~~~~m~~--~-----d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 268 (689)
..|++++|+. .|++... | +...+..+...+...|++++|...|+++.+ .+..++..+...|.+.|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3466777776 6665543 1 345677777777778888888887777765 235677778888888888888
Q ss_pred HHHHHHhcC---CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHh
Q 036237 269 ACELFDDME---IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN 345 (689)
Q Consensus 269 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 345 (689)
|...|+++. ..+..+|..+...|...|++++|++.|+++.... |+.......+... .
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~------~------------ 176 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG------A------------ 176 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC------------------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH------h------------
Confidence 888888765 3467889999999999999999999999998754 3322211100000 0
Q ss_pred CCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--C---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHH
Q 036237 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--K---KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP-TAIT 419 (689)
Q Consensus 346 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t 419 (689)
+..........+...+ ..|++++|...|+++.. | +...|..+...|.+.|++++|+..|+++... .| +..+
T Consensus 177 ~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~ 253 (368)
T 1fch_A 177 GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLL 253 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHH
Confidence 0000000111122222 55566666666655542 2 3456666666777777777777777776653 33 3456
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC------------CHH
Q 036237 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRP------------NFV 486 (689)
Q Consensus 420 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p------------~~~ 486 (689)
+..+...+...|++++|...|+.+.+. .+.+...+..+..+|.+.|++++|...++++- ..| ...
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 666667777777777777777776632 12235666777777777777777777776651 111 156
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
+|..+..++...|+.++|..++++.++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 778888888888888888777766554
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=1e-14 Score=157.63 Aligned_cols=350 Identities=11% Similarity=-0.028 Sum_probs=293.7
Q ss_pred CCeehHHHHHHHHHh----CCChHHHHHHHhhCCC-CCcchHHHHHHHHHh----CCChHHHHHHHhhcCcC-CcchHHH
Q 036237 186 KDLVSWNCLIDGYVK----KGEVEVAMKLFDEMPD-RDLFSWTCLVDGFSK----CGKVEIAREIFYRMPNR-NLVSWNA 255 (689)
Q Consensus 186 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ 255 (689)
.+..++..+-..|.. .+++++|+..|++..+ .+...+..+...|.. .++.++|...|++..+. ++..+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 116 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 355556666666666 7899999999998765 467788889999988 99999999999998875 4777888
Q ss_pred HHHHHHh----cCCHHHHHHHHHhcCCC-ChHHHHHHHHHHHH----cCChHHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 036237 256 MINGYMK----AGDVDSACELFDDMEIR-DLITWNSMIAGYEL----NGRFMEALELLETMLIGDVLPNDATLVSALSAV 326 (689)
Q Consensus 256 li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 326 (689)
|..+|.. .+++++|.+.|++..+. ++.++..|...|.. .++.++|++.|++..+.| +...+..+...+
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 193 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMY 193 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 9999998 88999999999987654 67788889998988 789999999999998765 566677777777
Q ss_pred Hc----ccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHHHHHH---
Q 036237 327 AG----LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK----CGSIESALTVFRAISK-KKVGHWTAMIVGLGM--- 394 (689)
Q Consensus 327 ~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~--- 394 (689)
.. .++.++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+...+..+...|..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~ 270 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLA 270 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTT
T ss_pred hcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Confidence 76 789999999999999876 56677788888886 8999999999998765 567788888888888
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-
Q 036237 395 -HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA-----GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG- 467 (689)
Q Consensus 395 -~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g- 467 (689)
.+++++|++.|++..+.| +...+..+...+... ++.++|..+|+...+. -+...+..|..+|.+.|
T Consensus 271 ~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 271 GAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGS 343 (490)
T ss_dssp SSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCC
Confidence 899999999999998765 455666777777776 8999999999999852 34567888899998877
Q ss_pred --CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh----cCCcch
Q 036237 468 --YLEEAKSTIESMPMRPNFVIWMSLLSGARN----HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA----AGQWDK 537 (689)
Q Consensus 468 --~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~----~g~~~~ 537 (689)
++++|.+.+++.-...++..+..|...+.. .+++++|...++++.+.. ++.++..|+.+|.. .+++++
T Consensus 344 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 789999999987434678899999999998 899999999999998864 57899999999998 899999
Q ss_pred HHHHHHHHHhCCC
Q 036237 538 VSEVREMMKKRGF 550 (689)
Q Consensus 538 A~~~~~~m~~~~~ 550 (689)
|...+++..+.+.
T Consensus 422 A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 422 AWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999988663
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=3.5e-15 Score=149.05 Aligned_cols=267 Identities=10% Similarity=0.014 Sum_probs=199.6
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhH
Q 036237 260 YMKAGDVDSACELFDDMEIRDL----ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335 (689)
Q Consensus 260 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 335 (689)
....|++..|+..++.....++ ...-.+..+|...|++++|+..++.. -.|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 4456777777777766554332 23345567777777777777655431 345556666666777777777777
Q ss_pred HHHHHHHHHhCC-ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 036237 336 RWMHSYIVKNGF-VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414 (689)
Q Consensus 336 ~~i~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 414 (689)
.+.++.++..+. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 777777777664 33566677778899999999999999998 567889999999999999999999999999985 5
Q ss_pred CCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 036237 415 PTAITF---IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWM 489 (689)
Q Consensus 415 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 489 (689)
|+.... ...+..+...|++++|..+|+++... .+.+...++.+..+|.+.|++++|...++++ ...| ++.+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 665322 12233444569999999999999964 4556889999999999999999999999986 3344 677899
Q ss_pred HHHHHHHhcCChHH-HHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHH
Q 036237 490 SLLSGARNHGNKDI-GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540 (689)
Q Consensus 490 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~ 540 (689)
.++..+...|+.++ +..+++++++++|+++.+. +...+.+.++++..
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 99999999999875 6789999999999987543 34455555555443
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=5.6e-16 Score=160.72 Aligned_cols=256 Identities=13% Similarity=0.000 Sum_probs=175.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHH
Q 036237 251 VSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327 (689)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 327 (689)
..+..+...|.+.|++++|...|+++.. .+..+|..+...|...|++++|+..|+++.+
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------ 127 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE------------------ 127 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------------
Confidence 3455556666666666666666655542 2445555666666666666666666655554
Q ss_pred cccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC-------------ChhhHHHHHHHHHH
Q 036237 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK-------------KVGHWTAMIVGLGM 394 (689)
Q Consensus 328 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~~~ 394 (689)
.. +.+..++..+...|...|++++|.+.|+++... ....+..+...|..
T Consensus 128 -----------------~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (365)
T 4eqf_A 128 -----------------LQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD 189 (365)
T ss_dssp -----------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------C
T ss_pred -----------------cC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh
Confidence 32 123444555555555556666665555555431 12234455778888
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 036237 395 HGMATQALDLFNKMCRMGMK-PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 473 (689)
.|++++|++.|+++.+.... ++..++..+...+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|.
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998885311 14678888889999999999999999998852 2345788999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------------CchhHHHHHHHHHhcCCcchHH
Q 036237 474 STIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD------------TIGCYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 474 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~L~~~~~~~g~~~~A~ 539 (689)
..++++ ...| +..+|..+...+...|++++|...+++++++.|+ +...+..|+.++...|+.+.+.
T Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 999886 2334 5788999999999999999999999999998876 3677899999999999999887
Q ss_pred HHHHH
Q 036237 540 EVREM 544 (689)
Q Consensus 540 ~~~~~ 544 (689)
.+.++
T Consensus 348 ~~~~~ 352 (365)
T 4eqf_A 348 AANLG 352 (365)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 76653
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=6.6e-16 Score=160.19 Aligned_cols=229 Identities=9% Similarity=0.022 Sum_probs=187.5
Q ss_pred hhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHH
Q 036237 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGL 392 (689)
Q Consensus 316 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 392 (689)
...+......+...|++++|..++..+++.. +.+..++..+...|.+.|++++|.+.|+++.. .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3446666667777777777777777777664 34677888999999999999999999998764 4678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 393 GMHGMATQALDLFNKMCRMGMKPTAI-----------TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 393 ~~~g~~~~A~~l~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
...|++++|+..|+++.+. .|+.. .+..+...+...|++++|..+|+++.....-.++...+..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999873 44422 2234577889999999999999999964322226889999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHH
Q 036237 462 ILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~ 539 (689)
.|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|+..+++++++.|+++.++..++.+|.+.|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999986 233 468899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 036237 540 EVREMMKK 547 (689)
Q Consensus 540 ~~~~~m~~ 547 (689)
..++++.+
T Consensus 302 ~~~~~al~ 309 (365)
T 4eqf_A 302 SNFLTALS 309 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=2.6e-15 Score=149.97 Aligned_cols=246 Identities=7% Similarity=-0.009 Sum_probs=202.9
Q ss_pred HHHHHHcCChHHHHHHHHHhccCCCCcCh--hhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcC
Q 036237 288 IAGYELNGRFMEALELLETMLIGDVLPND--ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 365 (689)
|.-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34456789999999999887654 3443 3556678899999999999875543 24567788888999999999
Q ss_pred CHHHHHHHHHhcCC----C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036237 366 SIESALTVFRAISK----K-KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440 (689)
Q Consensus 366 ~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 440 (689)
+.++|.+.++++.. | +...+..+...|.+.|++++|++.|++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998642 3 566788888999999999999999987 456778888999999999999999999
Q ss_pred HHhHHhcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036237 441 NMMINDYGIEPTIEH---YGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515 (689)
Q Consensus 441 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 515 (689)
+.+.+. .|+... ...++..+...|++++|..+|+++- .+.+...|+.+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999853 466321 2334455666799999999999872 34578899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcch-HHHHHHHHHhC
Q 036237 516 PDTIGCYVVLSNIYAAAGQWDK-VSEVREMMKKR 548 (689)
Q Consensus 516 p~~~~~~~~L~~~~~~~g~~~~-A~~~~~~m~~~ 548 (689)
|+++.++..++.++...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 57888888763
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=6.1e-15 Score=158.61 Aligned_cols=355 Identities=10% Similarity=-0.009 Sum_probs=199.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC------------CCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHH
Q 036237 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDD------------KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT 223 (689)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~ 223 (689)
....||.|...|...|++++|++.|++..+ ...++|+.+...|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~------- 122 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH------- 122 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------
Confidence 345677788888888888888777764321 1223455555555555555555544443211
Q ss_pred HHHHHHHhCCChHHHHHHHhhcCc----CCcchHHHHHHHHHhc--CCHHHHHHHHHhcCC---CChHHHHHHHHH---H
Q 036237 224 CLVDGFSKCGKVEIAREIFYRMPN----RNLVSWNAMINGYMKA--GDVDSACELFDDMEI---RDLITWNSMIAG---Y 291 (689)
Q Consensus 224 ~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~---~~~~~~~~li~~---~ 291 (689)
+...... ....++..+..++.+. +++++|...|++..+ .++..+..+... +
T Consensus 123 -----------------i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 123 -----------------VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL 185 (472)
T ss_dssp -----------------HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -----------------HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 0000000 0123344444444433 245666666665442 234444444433 2
Q ss_pred HHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHc----ccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCC
Q 036237 292 ELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAG----LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366 (689)
Q Consensus 292 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~ 366 (689)
...++.++|++.+++.++. .|+ ...+..+...+.. .++.++|.+.+..+.+.. +.+..++..+...|.+.|+
T Consensus 186 ~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 186 DNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp HHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred cCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCc
Confidence 3345666677766666543 232 2333333333332 345666777776666654 3345566667777777777
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 036237 367 IESALTVFRAISK---KKVGHWTAMIVGLGM-------------------HGMATQALDLFNKMCRMGMKPT-AITFIGV 423 (689)
Q Consensus 367 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 423 (689)
+++|.+.|++..+ .+..+|..+...|.. .+..++|+..|++..+. .|+ ..++..+
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 340 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSIL 340 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHH
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhH
Confidence 7777777776653 234455555554432 23356788888887763 343 4467788
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 036237 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIE----HYGCLVD-ILCRTGYLEEAKSTIESM-PMRPNFVIWMSLLSGARN 497 (689)
Q Consensus 424 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~ 497 (689)
...+...|++++|...|++... ..|+.. .+..+.. .+...|++++|+..+++. .+.|+...+...
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~------ 411 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM------ 411 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH------
T ss_pred HHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH------
Confidence 8889999999999999998874 234322 2333333 235778999999988875 455665433322
Q ss_pred cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 498 ~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
.+.+..++++.++.+|+++.++..|+.+|...|++++|.+.+++..+.|-.
T Consensus 412 ---~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 412 ---KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp ---HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 344566778888899999999999999999999999999999998876543
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=2.2e-15 Score=153.18 Aligned_cols=256 Identities=11% Similarity=-0.027 Sum_probs=177.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHH
Q 036237 251 VSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327 (689)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 327 (689)
..+..+...+...|++++|..+|+++.. .+...|..+...+...|++++|+..|+++.+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM------------------ 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------
Confidence 3344555555555666666555555432 2444555555555555555555555555544
Q ss_pred cccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC---ChhhHHHH--------------HH
Q 036237 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK---KVGHWTAM--------------IV 390 (689)
Q Consensus 328 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~ 390 (689)
.. +.+..++..+...|...|++++|.+.|+++... +...+..+ ..
T Consensus 84 -----------------~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 84 -----------------LD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp -----------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------
T ss_pred -----------------cC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 32 223344444555555555555555555544321 12222222 22
Q ss_pred -HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 036237 391 -GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469 (689)
Q Consensus 391 -~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 469 (689)
.+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++.+... .+.+...+..+...|.+.|++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCH
Confidence 3667788899999999988743 335667888888899999999999999988842 233477889999999999999
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------------CchhHHHHHHHHHhcCCc
Q 036237 470 EEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD------------TIGCYVVLSNIYAAAGQW 535 (689)
Q Consensus 470 ~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~L~~~~~~~g~~ 535 (689)
++|...++++ ... .+..+|..+...+...|++++|...++++++..|+ ++..+..++.+|.+.|++
T Consensus 223 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 9999999886 223 36788999999999999999999999999999998 688999999999999999
Q ss_pred chHHHHHHHH
Q 036237 536 DKVSEVREMM 545 (689)
Q Consensus 536 ~~A~~~~~~m 545 (689)
++|..++++.
T Consensus 303 ~~A~~~~~~~ 312 (327)
T 3cv0_A 303 DLVELTYAQN 312 (327)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 9999988643
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=173.49 Aligned_cols=132 Identities=10% Similarity=0.111 Sum_probs=113.4
Q ss_pred CccchhHHhHHHhhHHhcCCHHHHHHHHHhcC-------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 036237 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-------KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419 (689)
Q Consensus 347 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 419 (689)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997764 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 420 FIGVLNACSHAGL-VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 420 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
|+++|.++++.|. .++|.++|++|.. .|+.||..+|++++....+.+-++...++...+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999987 5788999999995 499999999999998888876666665554444
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.1e-16 Score=175.85 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=126.9
Q ss_pred CchHHHHHhhcccccCCCCHHHHHHHHhcccC------CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccH
Q 036237 52 HSGISSRLLSLYVDPHINNLHYARSIFDRILQ------HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL 125 (689)
Q Consensus 52 ~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 125 (689)
-..+||+||++|++ +|++++|..+|++|.. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 126 ~~~TynaLIdglcK--~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCCLL--TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34689999999999 9999999999987642 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-----CeehHHHHHHHHH
Q 036237 126 PCVIKGAARLGAI-KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-----DLVSWNCLIDGYV 199 (689)
Q Consensus 126 ~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~ 199 (689)
+++|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.+++..+..+ .+.+-+.|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999999888876666666665544421 2334455666666
Q ss_pred hCC
Q 036237 200 KKG 202 (689)
Q Consensus 200 ~~g 202 (689)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 655
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.63 E-value=2.8e-14 Score=144.94 Aligned_cols=270 Identities=10% Similarity=-0.003 Sum_probs=159.0
Q ss_pred chHHHHHHHHHhCCChHHHHHHHhhcCc---CCcchHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHH
Q 036237 220 FSWTCLVDGFSKCGKVEIAREIFYRMPN---RNLVSWNAMINGYMKAGDVDSACELFDDME---IRDLITWNSMIAGYEL 293 (689)
Q Consensus 220 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 293 (689)
..+..+...+...|++++|..+|+++.+ .+..++..+...|.+.|++++|...|+++. ..+..+|..+...|..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 3444555555556666666666655543 234556666667777777777777776654 2366788888899999
Q ss_pred cCChHHHHHHHHHhccCCCCcChhhHHHHH-HHHHcccchhhHHHHHHHHHHhCCccchhHHhHH-Hh-hHHhcCCHHHH
Q 036237 294 NGRFMEALELLETMLIGDVLPNDATLVSAL-SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL-IQ-MYSKCGSIESA 370 (689)
Q Consensus 294 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l-i~-~~~~~g~~~~A 370 (689)
.|++++|++.|+++.... |+.......+ ..+ ++......+ .. .+...|++++|
T Consensus 102 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHH
Confidence 999999999999888643 3322221111 000 000001111 11 24455555666
Q ss_pred HHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 036237 371 LTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447 (689)
Q Consensus 371 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 447 (689)
.+.|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~- 235 (327)
T 3cv0_A 158 RTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI- 235 (327)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 655555432 245566666666666677777777776666532 223456666666666777777777777766632
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-------------NFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 448 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
.+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+..++...|+.+.|...++++++
T Consensus 236 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 -NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred -CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1223566666777777777777777777664 1122 255677777777777777777777776665
Q ss_pred cCC
Q 036237 514 VAP 516 (689)
Q Consensus 514 ~~p 516 (689)
..|
T Consensus 315 ~~~ 317 (327)
T 3cv0_A 315 PFA 317 (327)
T ss_dssp HHH
T ss_pred hcc
Confidence 443
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=3.8e-14 Score=152.40 Aligned_cols=376 Identities=9% Similarity=-0.081 Sum_probs=226.6
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHh--------CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-------
Q 036237 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKL--------GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD------- 185 (689)
Q Consensus 121 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------- 185 (689)
....|+.+...+...|+.++|.+.+.+.++. .-+....+|+.+..+|...|++++|...|++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4556888989999999999999999988753 1123356899999999999999999998876531
Q ss_pred C----CeehHHHHHHHHHhC--CChHHHHHHHhhCCC--C-CcchHHHHHHH---HHhCCChHHHHHHHhhcCc---CCc
Q 036237 186 K----DLVSWNCLIDGYVKK--GEVEVAMKLFDEMPD--R-DLFSWTCLVDG---FSKCGKVEIAREIFYRMPN---RNL 250 (689)
Q Consensus 186 ~----~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~--~-d~~~~~~li~~---~~~~g~~~~A~~~~~~~~~---~~~ 250 (689)
+ ...+++.+..++.+. +++++|+..|++..+ | +...+..+..+ +...++.++|++.+++..+ .+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1 223455555555543 568899999988764 4 34444444444 4456777788888877765 234
Q ss_pred chHHHHHHHHHh----cCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcCh-hhHHHH
Q 036237 251 VSWNAMINGYMK----AGDVDSACELFDDME---IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND-ATLVSA 322 (689)
Q Consensus 251 ~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 322 (689)
.++..+...+.. .|++++|.+.+++.. ..+..+|..+...|...|++++|+..|++..+. .|+. .++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHH
Confidence 455555544444 456788888888754 346678888888999999999999999888764 3443 333333
Q ss_pred HHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHH
Q 036237 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMAT 399 (689)
Q Consensus 323 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 399 (689)
...+...+....+ . ............+..+.|...|+.... .+..+|..+...|...|+++
T Consensus 288 g~~y~~~~~~~~~---------~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVFQVMN---------L-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhh---------H-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 3333211110000 0 000111111222346677777776653 45678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 036237 400 QALDLFNKMCRMGMKPTAI--TFIGVLN-ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476 (689)
Q Consensus 400 ~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (689)
+|++.|++..+....|... .+..+.. ...+.|+.++|+..|++.. .+.|+........ ..+..++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---------~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---------DKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH---------HHHHHHH
Confidence 9999999998854333221 2233322 3457899999999999988 3566643332222 2233333
Q ss_pred HhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHH
Q 036237 477 ESM-P-MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526 (689)
Q Consensus 477 ~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 526 (689)
++. . .+.++.+|..|...+...|++++|+..|++++++.|.+|.+...++
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 332 1 2246779999999999999999999999999999998887665554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=4e-14 Score=134.89 Aligned_cols=193 Identities=12% Similarity=0.056 Sum_probs=157.0
Q ss_pred ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 036237 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGV 423 (689)
Q Consensus 348 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 423 (689)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45667778888899999999999999998765 45678999999999999999999999999884 565 5578888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 036237 424 LNACSHA-----------GLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFVIWMS 490 (689)
Q Consensus 424 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 490 (689)
..++... |++++|+..|++..+ +.|+ ...+..+..+|...|++++|...|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8889999 999999999999984 3455 788899999999999999999999986 11278889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988754
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.3e-13 Score=134.72 Aligned_cols=218 Identities=10% Similarity=0.022 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhH
Q 036237 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361 (689)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 361 (689)
..|..+...+...|++++|+..|+++.+.. . +..++..+...|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~-----------------------------------~~~~~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--K-----------------------------------DITYLNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C-----------------------------------CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--c-----------------------------------cHHHHHHHHHHH
Confidence 445556666666666666666666665443 3 344445555555
Q ss_pred HhcCCHHHHHHHHHhcCC--C-C-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036237 362 SKCGSIESALTVFRAISK--K-K-------VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431 (689)
Q Consensus 362 ~~~g~~~~A~~~~~~~~~--~-~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 431 (689)
...|++++|.+.|+++.. | + ...|..+...|...|++++|++.|++... ..|+. ..+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHh
Confidence 555666666665555443 1 1 46778888888899999999999998887 45553 3455668
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 036237 432 LVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-P-MRPNFVIWMSLLSGARNHGNKDIGEYAA 508 (689)
Q Consensus 432 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 508 (689)
++++|...++.+.. ..|+ ...+..+...|...|++++|...++++ . .+.+..+|..+...+...|++++|+..+
T Consensus 120 ~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 120 NAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88999999998874 3343 677888999999999999999999886 2 2346788999999999999999999999
Q ss_pred HHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 509 ~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+++++..|+++..+..++.+|.+.|++++|...+++..+.
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988753
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.3e-13 Score=134.77 Aligned_cols=239 Identities=12% Similarity=0.016 Sum_probs=169.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChh-hHHHHHHHH
Q 036237 250 LVSWNAMINGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA-TLVSALSAV 326 (689)
Q Consensus 250 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~ 326 (689)
...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.. |+.. .+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~------- 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REMRADY------- 75 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCH-------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccccch-------
Confidence 35678899999999999999999987643 677889999999999999999999999987532 2110 00
Q ss_pred HcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 036237 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406 (689)
Q Consensus 327 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 406 (689)
+....++..+...|.+.|++++|.+.|+++...+.. ...+...|++++|+..++
T Consensus 76 ---------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 76 ---------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAE 129 (258)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHH
Confidence 000234444555555566666666666555431111 234555677778888888
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 036237 407 KMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP- 483 (689)
Q Consensus 407 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 483 (689)
++... .|+ ...+..+...+...|++++|...|+.+... .+.+...+..+...|.+.|++++|...++++ ...|
T Consensus 130 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 130 AEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 77763 343 346667777778888888888888887742 2334677888888888888888888888776 2233
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC------CCCchhHHHHHH
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVA------PDTIGCYVVLSN 527 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~L~~ 527 (689)
+...|..+...+...|+++.|...+++++++. |++...+..|..
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 57788889999999999999999999999988 777666555543
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=4.6e-13 Score=132.31 Aligned_cols=240 Identities=9% Similarity=-0.084 Sum_probs=177.5
Q ss_pred cCChHHHHHHHHHhccCCC---CcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHH
Q 036237 294 NGRFMEALELLETMLIGDV---LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370 (689)
Q Consensus 294 ~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 370 (689)
.|++++|+..|+++.+... +.+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3556666666666665421 1123445555666666677777777776666654 33567777888888889999999
Q ss_pred HHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 036237 371 LTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447 (689)
Q Consensus 371 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 447 (689)
.+.|+++.. .+...|..+...|.+.|++++|+..|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 998887764 4677899999999999999999999999988 4566665555556667789999999999888753
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRPN-----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 448 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
.+++...+ .++..+...++.++|...+++.- ..|+ ..+|..+...+...|++++|...++++++++|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 33444444 47888888899999999998863 2232 5788999999999999999999999999999977544
Q ss_pred HHHHHHHHHhcCCcchHHHHH
Q 036237 522 YVVLSNIYAAAGQWDKVSEVR 542 (689)
Q Consensus 522 ~~~L~~~~~~~g~~~~A~~~~ 542 (689)
+ ..++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 3 56777888888887665
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=4.3e-13 Score=132.39 Aligned_cols=243 Identities=13% Similarity=0.032 Sum_probs=134.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHc
Q 036237 252 SWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328 (689)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 328 (689)
........+...|++++|...|++..+ .+...|..+...|...|++++|++.|++..... ++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~---------- 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKA---------- 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTC----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhH----------
Confidence 344555666666777777776666542 234466666666666777777777666666522 22111
Q ss_pred ccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHH
Q 036237 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLF 405 (689)
Q Consensus 329 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 405 (689)
....+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 73 ---------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 73 ---------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 011233444444445555555555544432 23345555555555556666666555
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHhC-
Q 036237 406 NKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGY---LEEAKSTIESM- 479 (689)
Q Consensus 406 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~- 479 (689)
++..+. .|+ ...+..+...+...+++++|...|+.+.+ ..|+ ...+..+...+...|+ +++|...++++
T Consensus 132 ~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 132 EKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp GGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 555542 333 22333333133333466666666666553 2232 4455555555555555 44455554443
Q ss_pred ---CCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc
Q 036237 480 ---PMRPN------FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532 (689)
Q Consensus 480 ---~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~ 532 (689)
...|+ ..+|..+...+...|+++.|...++++++++|+++.+...+.......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 11122 246777888889999999999999999999999987777766555443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=7.4e-13 Score=141.04 Aligned_cols=367 Identities=10% Similarity=-0.005 Sum_probs=185.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHhhCCCCCeehHHHHHHHHHhCC----
Q 036237 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI---DLGRRVFDAMDDKDLVSWNCLIDGYVKKG---- 202 (689)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g---- 202 (689)
..+.+.|++++|.+++..+.+.| +...+..|..+|...|+. ++|...|++..+.++..+..|...+...|
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 34445566666666666666655 222333444455555555 66666666665555555555555444443
Q ss_pred -ChHHHHHHHhhCCCC-CcchHHHHHHHHHhCCChHH---HHHHHhhcCc-CCcchHHHHHHHHHhcCC----HHHHHHH
Q 036237 203 -EVEVAMKLFDEMPDR-DLFSWTCLVDGFSKCGKVEI---AREIFYRMPN-RNLVSWNAMINGYMKAGD----VDSACEL 272 (689)
Q Consensus 203 -~~~~A~~~~~~m~~~-d~~~~~~li~~~~~~g~~~~---A~~~~~~~~~-~~~~~~~~li~~~~~~g~----~~~A~~~ 272 (689)
+.++|+..|++..++ +...+..|...|...+..++ +.+.+....+ .++.....|...|...+. .+++..+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 455666666655442 33455555555555443322 2222222222 234555566666666653 3344444
Q ss_pred HHhcCCCChHHHHHHHHHHHHcC---ChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCcc
Q 036237 273 FDDMEIRDLITWNSMIAGYELNG---RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349 (689)
Q Consensus 273 ~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 349 (689)
+......++.++..|...|...| +.++|++.|++..+.|. +
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~----------------------------------- 211 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-V----------------------------------- 211 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-S-----------------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-H-----------------------------------
Confidence 55555555556666666666666 56666666666655441 1
Q ss_pred chhHHhHHHhhHHhc----CCHHHHHHHHHhcCCCChhhHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036237 350 DGVLGTLLIQMYSKC----GSIESALTVFRAISKKKVGHWTAMIVG-L--GMHGMATQALDLFNKMCRMGMKPTAITFIG 422 (689)
Q Consensus 350 ~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 422 (689)
+...+..|..+|... ++.++|.+.|++....++..+..|... | ...+++++|++.|++..+.| +...+..
T Consensus 212 ~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~ 288 (452)
T 3e4b_A 212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELL 288 (452)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 222222333334332 566666666666553345556666555 3 34677777777777777655 4445555
Q ss_pred HHHHHhccC-----cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036237 423 VLNACSHAG-----LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR----TGYLEEAKSTIESMPMRPNFVIWMSLLS 493 (689)
Q Consensus 423 ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 493 (689)
|...|. .| ++++|..+|++.. .-++..+..|..+|.. ..++++|...|++.-...+......|..
T Consensus 289 Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~ 362 (452)
T 3e4b_A 289 LGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQ 362 (452)
T ss_dssp HHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 555554 44 7777777776654 2345566666666665 3377777777776532334444555555
Q ss_pred HHHh----cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH--hcCCcchHHHHHHHHH
Q 036237 494 GARN----HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA--AAGQWDKVSEVREMMK 546 (689)
Q Consensus 494 ~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~--~~g~~~~A~~~~~~m~ 546 (689)
.|.. ..|.+.|...++++.+..+.. +...+..+.. ..++.++|..+.++..
T Consensus 363 ~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 363 LFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5543 347778888888877765432 3333333322 2334556666665544
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=1.2e-12 Score=139.30 Aligned_cols=342 Identities=10% Similarity=0.001 Sum_probs=170.3
Q ss_pred HHHHHHhCCChHHHHHHHhhCCC-CCcchHHHHHHHHHhCCCh---HHHHHHHhhcCcCCcchHHHHHHHHHhcC-----
Q 036237 194 LIDGYVKKGEVEVAMKLFDEMPD-RDLFSWTCLVDGFSKCGKV---EIAREIFYRMPNRNLVSWNAMINGYMKAG----- 264 (689)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~-~d~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g----- 264 (689)
+...+.+.|++++|+++|++..+ .+...+..+...|...|+. ++|...|++..+.++..+..|..++...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 45556667777777777776654 2444555555555556666 67777777666555556666666444444
Q ss_pred CHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCChHH---HHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHH
Q 036237 265 DVDSACELFDDMEIR-DLITWNSMIAGYELNGRFME---ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340 (689)
Q Consensus 265 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 340 (689)
+.++|...|++...+ +...+..|...|...+..++ +.+.+......| +......+...+...+.++++.....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 556666666665433 34456666666665544332 333333333222 22333444444444454443333322
Q ss_pred HHHHhCCccchhHHhHHHhhHHhcC---CHHHHHHHHHhcCCC---ChhhHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 036237 341 YIVKNGFVVDGVLGTLLIQMYSKCG---SIESALTVFRAISKK---KVGHWTAMIVGLGMH----GMATQALDLFNKMCR 410 (689)
Q Consensus 341 ~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~ 410 (689)
...+.-...++..+..|..+|.+.| +.++|.+.|++..+. +...+..|...|... +++++|++.|++..
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 2322222233345566666666666 666666666655432 222334555555443 56666666666665
Q ss_pred CCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHHhCCCC
Q 036237 411 MGMKPTAITFIGVLNA-C--SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG-----YLEEAKSTIESMPMR 482 (689)
Q Consensus 411 ~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~ 482 (689)
.| +...+..+... + ...+++++|..+|++..+ .| +...+..|..+|. .| ++++|...|++.- .
T Consensus 245 ~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~ 315 (452)
T 3e4b_A 245 PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G 315 (452)
T ss_dssp GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T
T ss_pred CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C
Confidence 22 23334444433 2 346666666666666653 22 4555556666665 34 6666766666665 4
Q ss_pred CCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh----cCCcchHHHHHHHHHhCCC
Q 036237 483 PNFVIWMSLLSGARN----HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA----AGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 483 p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~~~ 550 (689)
.++..+..|...|.. ..|.+.|...++++.+. .++.+...|+.+|.. ..+.++|..+++...+.|.
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 455566666555544 23666666666666553 344566666666654 3356666666666665553
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=3.4e-12 Score=124.34 Aligned_cols=196 Identities=9% Similarity=-0.051 Sum_probs=141.6
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 427 (689)
...+..+...|...|++++|.+.|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34555566667777777777777766543 355677777777777888888888887777642 22455677777777
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHH
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIG 504 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a 504 (689)
...|++++|..+++.+.. .+..|+ ...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 778888888888877763 224453 566777777888888888888887775 222 3566777888888888888888
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 505 ~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
...++++++..|+++..+..++.+|...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888888878888888888888888888888877653
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=1.7e-11 Score=121.06 Aligned_cols=223 Identities=11% Similarity=-0.018 Sum_probs=144.7
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHh
Q 036237 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359 (689)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 359 (689)
++.++..+...|...|++++|+..|++..+.+ +...+.. +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~-----------------------------------lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFN-----------------------------------LGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHH-----------------------------------HHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHH-----------------------------------HHH
Confidence 55667777777777778888887777776522 2223333 444
Q ss_pred hHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 036237 360 MYSK----CGSIESALTVFRAISK-KKVGHWTAMIVGLGM----HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH- 429 (689)
Q Consensus 360 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 429 (689)
.|.. .|++++|.+.|++..+ .+...+..+...|.. .+++++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 4444 5555555555554433 244556666666666 666777777776666643 45556666666666
Q ss_pred ---cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 036237 430 ---AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR----TGYLEEAKSTIESMPMRPNFVIWMSLLSGARN----H 498 (689)
Q Consensus 430 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~ 498 (689)
.+++++|..+|++..+. + +...+..+...|.. .+++++|...+++.-...+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 67777777777766632 2 44556666666666 67777777777665322355667777777777 7
Q ss_pred CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh----cCCcchHHHHHHHHHhCC
Q 036237 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA----AGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 499 g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~~ 549 (689)
+++++|...++++++.+| +..+..|+.+|.. .|++++|.+.+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 788888888888777765 5677778888887 788888888888776654
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=4.7e-12 Score=120.63 Aligned_cols=196 Identities=12% Similarity=0.004 Sum_probs=154.2
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 426 (689)
+..++..+...|...|++++|.+.|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455666777778888888888888877653 356678888888888888888888888887742 2345677778888
Q ss_pred Hhcc-CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 036237 427 CSHA-GLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKD 502 (689)
Q Consensus 427 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 502 (689)
+... |++++|...++.+.. .+..|+ ...+..+...|...|++++|...++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888874 233444 567788888888889999988888876 2233 5778888888888899999
Q ss_pred HHHHHHHHHhhcCC-CCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 503 IGEYAANNLIKVAP-DTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 503 ~a~~~~~~~~~~~p-~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+|...++++++..| +++..+..++..+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999998888 8888888888888889999999888888765
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=1.6e-12 Score=125.67 Aligned_cols=196 Identities=13% Similarity=0.104 Sum_probs=145.9
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 426 (689)
....+..+...+...|++++|...|+++.. .+...|..+...|...|++++|++.|++..+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 455666677778888888888888888754 356788888888999999999999999888742 2356677888888
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHH
Q 036237 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PM-RPNFVIWMSLLSGARNHGNKDIG 504 (689)
Q Consensus 427 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a 504 (689)
+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|...++++ .. +.+...|..+...+...|+++.|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88999999999999988853 2345678888889999999999999998876 22 34677888888999999999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 505 ~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+..++++++..|+++.++..++.+|...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999998889999999999999999999999988763
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=1.7e-11 Score=121.17 Aligned_cols=225 Identities=10% Similarity=-0.053 Sum_probs=167.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChHHHHHHHHHHHH----cCChHHHHHHHHHhccCCCCcChhhHHHHH
Q 036237 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYEL----NGRFMEALELLETMLIGDVLPNDATLVSAL 323 (689)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 323 (689)
++.++..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l- 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL- 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH-
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH-
Confidence 4567788999999999999999999987755 67788889999999 999999999999887654 33333333
Q ss_pred HHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHHHHHH----
Q 036237 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK----CGSIESALTVFRAISK-KKVGHWTAMIVGLGM---- 394 (689)
Q Consensus 324 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~---- 394 (689)
..+|.. .+++++|.+.|++..+ .+..++..+...|..
T Consensus 81 ----------------------------------g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 81 ----------------------------------GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp ----------------------------------HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSS
T ss_pred ----------------------------------HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCc
Confidence 334444 5555555555555443 345566667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----c
Q 036237 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH----AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR----T 466 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~ 466 (689)
.+++++|++.|++..+.+ +...+..+...+.. .+++++|...|+...+. .+...+..+..+|.. .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence 778888888888877754 45556666666766 78888888888887742 245677778888888 8
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCC
Q 036237 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARN----HGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 467 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 518 (689)
+++++|...+++.-...+...+..+...+.. .+++++|...+++++++.|++
T Consensus 200 ~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 200 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 8888888888876322346777888888888 899999999999999998854
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=1.6e-11 Score=119.55 Aligned_cols=205 Identities=11% Similarity=-0.001 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhh
Q 036237 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360 (689)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 360 (689)
...|..+...+...|++++|++.|+++.. .. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----------------------------------~~-~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE-----------------------------------ID-PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH-----------------------------------HC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----------------------------------cC-CChHHHHHHHHHH
Confidence 34555566666666666666666665544 22 2234455566666
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 036237 361 YSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDG 436 (689)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 436 (689)
|...|++++|.+.|+++.. .+...|..+...|...|++++|++.|+++...+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776543 3566788888888888999999999988877444554 44677778888899999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
..+|+.+.+. .+.+...+..+...|.+.|++++|...++++ ... .+...+..+...+...|+.+.|...++++++.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999988743 2334778888999999999999999999886 233 46678888888999999999999999999999
Q ss_pred CCCCchhHH
Q 036237 515 APDTIGCYV 523 (689)
Q Consensus 515 ~p~~~~~~~ 523 (689)
.|+++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 998875543
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=3e-12 Score=132.27 Aligned_cols=241 Identities=10% Similarity=0.006 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHcccc-hhhHHHHHHHHHHhCCccchhHHhHHHh
Q 036237 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAGLAV-LNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359 (689)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~li~ 359 (689)
..|+.+...+.+.|++++|++.|++.+.. .|+ ...|..+..++...|+ +++|...++.+++.. +.+..+|..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 34555555555555555555555555542 232 3334444445555554 555555555555544 234566666777
Q ss_pred hHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc-cCcHH
Q 036237 360 MYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSH-AGLVN 434 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~ 434 (689)
+|.+.|++++|+..|+++.. .+...|..+..++.+.|++++|+..|+++++. .|+ ...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 77777777777777777654 46678888888888889999999999998884 454 5578888888877 55546
Q ss_pred HH-----HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------
Q 036237 435 DG-----RRYFNMMINDYGIEPT-IEHYGCLVDILCRTG--YLEEAKSTIESMPMRP-NFVIWMSLLSGARNHG------ 499 (689)
Q Consensus 435 ~a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g------ 499 (689)
+| +..|+..+. +.|+ ...|..+..+|.+.| ++++|.+.+.++...| +...+..++..+...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 477877773 4455 678888888888888 6888988888775445 4667888888887764
Q ss_pred --C-hHHHHHHHHHH-hhcCCCCchhHHHHHHHHH
Q 036237 500 --N-KDIGEYAANNL-IKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 500 --~-~~~a~~~~~~~-~~~~p~~~~~~~~L~~~~~ 530 (689)
+ .++|+.+++++ ++++|.....|..++..+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 2 58899999999 8999988888877776654
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=2.1e-12 Score=124.86 Aligned_cols=212 Identities=14% Similarity=0.071 Sum_probs=144.1
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHh
Q 036237 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359 (689)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 359 (689)
....|..+...+...|++++|+..|+++.+.. | .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~----------------------------------~~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--K----------------------------------EDAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTTC--T----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--c----------------------------------ccHHHHHHHHH
Confidence 34456666667777777777777777766532 2 22344445555
Q ss_pred hHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036237 360 MYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 436 (689)
.|.+.|++++|.+.|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 66666666666666665543 356677888888888889999999888888743 33566777788888899999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
..+++.+.+. .+.+...+..+...|.+.|++++|...++++- .+.+..+|..+...+...|++++|...+++++++
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999888742 23457788889999999999999999998762 2346778999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHH
Q 036237 515 APDTIGCYVVLSNIYA 530 (689)
Q Consensus 515 ~p~~~~~~~~L~~~~~ 530 (689)
.|+++.++..+..+..
T Consensus 223 ~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGH 238 (243)
T ss_dssp CTTCHHHHHHHTC---
T ss_pred CcchHHHHHHHHHHHh
Confidence 9999887777665543
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=7.1e-12 Score=119.18 Aligned_cols=191 Identities=15% Similarity=0.065 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhH
Q 036237 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361 (689)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 361 (689)
..|..+...+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|...++.+++.. +.+...+..+...|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444555555555555555555554422 1122333333334444444444444444444433 12333444444444
Q ss_pred Hhc-----------CCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036237 362 SKC-----------GSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427 (689)
Q Consensus 362 ~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 427 (689)
.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 444 666666666665543 244556666666666666666666666666654 4555666666666
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
...|++++|+..|+.+.+ ..| +...+..+..++.+.|++++|...+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666663 233 3455666666666666666666666554
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=2e-12 Score=136.18 Aligned_cols=258 Identities=12% Similarity=-0.017 Sum_probs=165.5
Q ss_pred HHHHHHcCChHHHHHHHHHhccCCCCcCh-----hhHHHHHHHHHcccchhhHHHHHHHHHHh----C-CccchhHHhHH
Q 036237 288 IAGYELNGRFMEALELLETMLIGDVLPND-----ATLVSALSAVAGLAVLNKGRWMHSYIVKN----G-FVVDGVLGTLL 357 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g-~~~~~~~~~~l 357 (689)
...+...|++++|+..|+++++.+ |+. ..+..+...+...|++++|...+..+++. + .+....++..+
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 334444444444444444444321 211 12333344444444444444444444332 1 12234455666
Q ss_pred HhhHHhcCCHHHHHHHHHhcCCC---------ChhhHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHC
Q 036237 358 IQMYSKCGSIESALTVFRAISKK---------KVGHWTAMIVGLGMHGM-----------------ATQALDLFNKMCRM 411 (689)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~~ 411 (689)
...|...|++++|.+.|++.... ...+|..+...|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66777777777777777665431 23367777778888888 88888877776542
Q ss_pred ----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC--
Q 036237 412 ----GMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESMP-- 480 (689)
Q Consensus 412 ----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 480 (689)
+-.|. ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|...+++.-
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11122 236677778888888999998888887642211122 2377888889999999999988887751
Q ss_pred ---CC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC------chhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 481 ---MR---PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT------IGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 481 ---~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.. ....++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|...+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 124577888888999999999999999998864432 34788999999999999999999998765
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=5.5e-12 Score=132.19 Aligned_cols=262 Identities=13% Similarity=0.002 Sum_probs=166.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccCCCCcCh-----hhHHHHHHHHHcccchhhHHHHHHHHHHh----CCc-cchhH
Q 036237 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPND-----ATLVSALSAVAGLAVLNKGRWMHSYIVKN----GFV-VDGVL 353 (689)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~ 353 (689)
+......+...|++++|+..|+++...+ |+. ..+..+...+...|+++.|...+..+.+. +.. ....+
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3333444444444444444444444321 111 22333344444444444444444443321 111 12445
Q ss_pred HhHHHhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCC--------------------HHHHHHH
Q 036237 354 GTLLIQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGMHGM--------------------ATQALDL 404 (689)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l 404 (689)
+..+...|...|++++|...|++... .+ ..++..+...|...|+ +++|++.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 56666777777777777777766543 12 3367777788888888 8888888
Q ss_pred HHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHH
Q 036237 405 FNKMCRM----GMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKST 475 (689)
Q Consensus 405 ~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~ 475 (689)
+++.... +-.|. ..++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7776542 11222 235777778888888999998888887643221222 34778888888999999999888
Q ss_pred HHhCC----CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC------chhHHHHHHHHHhcCCcchHHHH
Q 036237 476 IESMP----MRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT------IGCYVVLSNIYAAAGQWDKVSEV 541 (689)
Q Consensus 476 ~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~~~~~g~~~~A~~~ 541 (689)
+++.- ..++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 87751 1112 4577888888899999999999999988864432 55788899999999999999999
Q ss_pred HHHHHh
Q 036237 542 REMMKK 547 (689)
Q Consensus 542 ~~~m~~ 547 (689)
+++..+
T Consensus 330 ~~~al~ 335 (406)
T 3sf4_A 330 AEKHLE 335 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.42 E-value=2.6e-11 Score=115.44 Aligned_cols=208 Identities=14% Similarity=0.039 Sum_probs=151.4
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHh
Q 036237 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359 (689)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 359 (689)
+...|..+...+...|++++|++.|+++.+.. | .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHH
Confidence 45566777777777777777777777765432 2 12334455556
Q ss_pred hHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHH
Q 036237 360 MYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMH-GMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVN 434 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 434 (689)
.|...|++++|.+.|+++.. .+...|..+...|... |++++|+..|+++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666543 3556777888888888 888888888888887433444 456777788888889999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-C-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036237 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PM-R-PNFVIWMSLLSGARNHGNKDIGEYAANNL 511 (689)
Q Consensus 435 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 511 (689)
+|...++.+.+. .+.+...+..+...|.+.|++++|...++++ .. + .+...+..+...+...|+.+.+...++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999888742 2234778888889999999999999998876 22 2 46667777777888999999999999999
Q ss_pred hhcCCCCchhHHHH
Q 036237 512 IKVAPDTIGCYVVL 525 (689)
Q Consensus 512 ~~~~p~~~~~~~~L 525 (689)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999887665444
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=4.8e-12 Score=128.57 Aligned_cols=259 Identities=14% Similarity=0.003 Sum_probs=169.8
Q ss_pred HHHHHHcCChHHHHHHHHHhccCCCCcC-----hhhHHHHHHHHHcccchhhHHHHHHHHHHh----CCc-cchhHHhHH
Q 036237 288 IAGYELNGRFMEALELLETMLIGDVLPN-----DATLVSALSAVAGLAVLNKGRWMHSYIVKN----GFV-VDGVLGTLL 357 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~~~l 357 (689)
...+...|++++|+..|+++.+.. |+ ...+..+...+...|+++.|...+..+.+. +.. ....++..+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 334444444444444444444321 21 123333444444444555544444443321 111 124456667
Q ss_pred HhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCC--------------------HHHHHHHHHHH
Q 036237 358 IQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGMHGM--------------------ATQALDLFNKM 408 (689)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m 408 (689)
...|...|++++|...|++... .+ ..++..+...|...|+ +++|++.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777778888888777776543 12 2367778888888888 88888888776
Q ss_pred HHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 409 CRM----GMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 409 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 11222 236777778888899999999999887642211122 347788889999999999999988875
Q ss_pred C----CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC------chhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 480 P----MRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT------IGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 480 ~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
- ..++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|.+.|++++|...+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1 1122 4577888889999999999999999998865432 347889999999999999999999988
Q ss_pred HhC
Q 036237 546 KKR 548 (689)
Q Consensus 546 ~~~ 548 (689)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 763
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.40 E-value=2.7e-11 Score=119.29 Aligned_cols=219 Identities=9% Similarity=0.004 Sum_probs=164.5
Q ss_pred HHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--CCh----hhHHHHHHHHHHcCCH
Q 036237 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--KKV----GHWTAMIVGLGMHGMA 398 (689)
Q Consensus 325 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~ 398 (689)
.+...|++++|...+..+++.. +.+...+..+...|...|++++|.+.|+++.. ++. .+|..+...|...|++
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 3334444444444444444332 22344556667777788888888888877654 222 3488999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 036237 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIE 477 (689)
Q Consensus 399 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 477 (689)
++|++.|++..+.. +.+...+..+...+...|++++|...|++..+ ..|+ ...+..+...+...+++++|.+.++
T Consensus 91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999842 22456888999999999999999999999883 3554 6777778834445569999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhcC---CCC-----chhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 478 SM-PMRP-NFVIWMSLLSGARNHGN---KDIGEYAANNLIKVA---PDT-----IGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 478 ~~-~~~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
++ ...| +...|..+...+...|+ .+.|...+++++++. |+. ..+|..++..|...|++++|.+.+++
T Consensus 167 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 86 2334 47788888888888888 888999999998865 432 25788999999999999999999999
Q ss_pred HHhC
Q 036237 545 MKKR 548 (689)
Q Consensus 545 m~~~ 548 (689)
..+.
T Consensus 247 al~~ 250 (272)
T 3u4t_A 247 ILAL 250 (272)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8763
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=1.7e-11 Score=113.07 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=130.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 459 (689)
+...|..+...|.+.|++++|++.|++..+ +.|+ ..++..+..++...|++++|...++..... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 455677788888888888888888888777 3454 446777777888888888888888887742 23345667777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcch
Q 036237 460 VDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537 (689)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~ 537 (689)
...+...+++++|...+.+. ... .+...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 78888888888888888775 223 3577888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 036237 538 VSEVREMMKKR 548 (689)
Q Consensus 538 A~~~~~~m~~~ 548 (689)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999888763
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=4.2e-12 Score=125.35 Aligned_cols=242 Identities=11% Similarity=-0.093 Sum_probs=137.3
Q ss_pred CCCHHHHHHHHhcccCC------CChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHH
Q 036237 68 INNLHYARSIFDRILQH------PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~~------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 141 (689)
.|++++|...|+++... .+..+|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 57778888877776521 134567777777778888888888888777653 22456677777777777777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCeehHHHHHHHHHhCCChHHHHHHHhhCCC--C
Q 036237 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--R 217 (689)
Q Consensus 142 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~ 217 (689)
...++.+++.. +.+..++..+...|.+.|++++|...|+++.+ |+...+...+..+...|++++|...+++... |
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 77777777764 44566777777777777777777777776642 3333333333444455666666666644432 2
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCh
Q 036237 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297 (689)
Q Consensus 218 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 297 (689)
+......++..+...++.++|...+..+.+.++.. ...+..+|..+...|...|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------~~~~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 176 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSL------------------------AEHLSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp CCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH------------------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccc------------------------cccccHHHHHHHHHHHHcCCH
Confidence 11111224444444444445555444443321100 000134566666666677777
Q ss_pred HHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHH
Q 036237 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339 (689)
Q Consensus 298 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 339 (689)
++|...|++..... |+. +.....++...|++++|.+.+
T Consensus 232 ~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 232 DSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 77777776666532 322 122233445556666555443
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=6.3e-12 Score=131.71 Aligned_cols=286 Identities=13% Similarity=0.028 Sum_probs=183.0
Q ss_pred chHHHHHHHHHhCCChHHHHHHHhhcCc--CC-----cchHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----ChHH
Q 036237 220 FSWTCLVDGFSKCGKVEIAREIFYRMPN--RN-----LVSWNAMINGYMKAGDVDSACELFDDMEI-----R----DLIT 283 (689)
Q Consensus 220 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~ 283 (689)
..+......+...|++++|...|+++.+ ++ ..++..+...|...|++++|...|++... . ...+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3455566667777777777777777664 22 23556666667777777777766665431 0 2345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccCCCC-cChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHH
Q 036237 284 WNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362 (689)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~ 362 (689)
|..+...|...|++++|+..+++....... ++. .....++..+...|.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~ 138 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYH 138 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHHHH
Confidence 566666666667777776666665431100 000 001223444445555
Q ss_pred hcCC--------------------HHHHHHHHHhcCC-----C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 036237 363 KCGS--------------------IESALTVFRAISK-----K----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413 (689)
Q Consensus 363 ~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 413 (689)
..|+ +++|.+.|++... . ...+|..+...|...|++++|+..|++..+...
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5555 5555555544321 1 133677778888888888888888887765210
Q ss_pred -CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----
Q 036237 414 -KPT----AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESMP---- 480 (689)
Q Consensus 414 -~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~---- 480 (689)
.++ ..++..+...+...|++++|...++.......-.++ ..++..+...|...|++++|...+++.-
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 112 226777778888889999998888877642211112 4577888889999999999998887751
Q ss_pred CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC------CCchhHHHHHHHHHhcCCcc
Q 036237 481 MRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAP------DTIGCYVVLSNIYAAAGQWD 536 (689)
Q Consensus 481 ~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~L~~~~~~~g~~~ 536 (689)
..++ ..++..+...+...|++++|...+++++++.+ ....++..++.+|...|+..
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1122 55788888899999999999999999988532 23557788888888888764
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=3.3e-12 Score=136.88 Aligned_cols=206 Identities=10% Similarity=-0.017 Sum_probs=172.5
Q ss_pred hhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCH-HHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 036237 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI-ESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKM 408 (689)
Q Consensus 333 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 408 (689)
+.+.+.+....+. .+.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|.+.|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444433322 234567777788888888888 888888887754 45778999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc--------CCHH
Q 036237 409 CRMGMKPTAITFIGVLNACSHA---------GLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRT--------GYLE 470 (689)
Q Consensus 409 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~ 470 (689)
.+ +.|+...+..+...+... |++++|...|++..+ +.|+ ...|..+..+|... |+++
T Consensus 164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 98 568878888899999999 999999999999984 3454 78899999999999 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 471 EAKSTIESM-PMRP----NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 471 ~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
+|.+.|++. ...| +...|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999986 3345 7889999999999999999999999999999999999999999999999999999875543
No 62
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=1.3e-11 Score=127.54 Aligned_cols=224 Identities=12% Similarity=0.083 Sum_probs=190.7
Q ss_pred hhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCC-HHHHHHHHHhcCC---CChhhHHHHHHHH
Q 036237 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS-IESALTVFRAISK---KKVGHWTAMIVGL 392 (689)
Q Consensus 317 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 392 (689)
..|..+...+...|++++|...+..+++.. +.+..+++.+...|.+.|+ +++|+..|+++.. .+...|+.+...|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345666677888999999999999999876 4467888999999999997 9999999998875 4678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh-cCCH
Q 036237 393 GMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCR-TGYL 469 (689)
Q Consensus 393 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~-~g~~ 469 (689)
...|++++|+..|+++.+ +.|+ ...|..+..++...|++++|+..|+++++ +.|+ ...|+.+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999998 4554 56889999999999999999999999994 3454 7889999999999 6665
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC-------
Q 036237 470 EEA-----KSTIESM-PMRP-NFVIWMSLLSGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG------- 533 (689)
Q Consensus 470 ~~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g------- 533 (689)
++| ++.+++. ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..|+.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4667664 3445 5779999999998888 689999999998 999999999999999999875
Q ss_pred --CcchHHHHHHHH-Hh
Q 036237 534 --QWDKVSEVREMM-KK 547 (689)
Q Consensus 534 --~~~~A~~~~~~m-~~ 547 (689)
.+++|.++++++ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 358999999988 44
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=2.2e-09 Score=118.36 Aligned_cols=413 Identities=12% Similarity=0.024 Sum_probs=273.3
Q ss_pred CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCC---hHHHHHHHHHHHHhC-CCCchhH
Q 036237 84 HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA---IKEGKQIHGLVFKLG-FGFDKFV 159 (689)
Q Consensus 84 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~ 159 (689)
+.|..+|..++..+.+.+..+.+..+|+++... .+.+...|...+..-.+.++ .+.+..+|++.+... .+|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 468889999999999999999999999999876 23345567777777777788 999999999998764 2478888
Q ss_pred HHHHHHHHHhcCCh--------HHHHHHHhhCC------CC-CeehHHHHHHHHH---------hCCChHHHHHHHhhCC
Q 036237 160 LSSLVSMYAKFGEI--------DLGRRVFDAMD------DK-DLVSWNCLIDGYV---------KKGEVEVAMKLFDEMP 215 (689)
Q Consensus 160 ~~~li~~~~~~g~~--------~~A~~~~~~m~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~ 215 (689)
|...+....+.++. +...++|+... .+ +...|...+.-.. .+++++.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88888776666654 33447777532 22 3456877776543 2345677888888877
Q ss_pred CCCcchHHHHHHHHHh---CCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHh-------cCC-------
Q 036237 216 DRDLFSWTCLVDGFSK---CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD-------MEI------- 278 (689)
Q Consensus 216 ~~d~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~------- 278 (689)
.-....+..+-..|.. .-+...+.+++.+ ...+++.|...+.+ +..
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 5211112222211111 0000012121111 01122223333322 110
Q ss_pred -------C--------ChHHHHHHHHHHHHcC-------ChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHH
Q 036237 279 -------R--------DLITWNSMIAGYELNG-------RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336 (689)
Q Consensus 279 -------~--------~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 336 (689)
| -...|...+.---.++ ..+.+..+|++.+.. .+-+...|.....-+...|+.+.|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 0 0234665555333322 123456678777764 2335556666666667778888896
Q ss_pred -HHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC-------------CC------------hhhHHHHHH
Q 036237 337 -WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-------------KK------------VGHWTAMIV 390 (689)
Q Consensus 337 -~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~ 390 (689)
.+++..+... +.+..++-..+...-+.|+++.|.++|+++.. |+ ...|...+.
T Consensus 364 r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 9999998753 45677788888899999999999999998764 21 236888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036237 391 GLGMHGMATQALDLFNKMCRM-GMKPTAITFIGVLNACSH-AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468 (689)
Q Consensus 391 ~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 468 (689)
...+.|..+.|..+|.+..+. + .+....|......-.+ .++.+.|..+|+...+. .+-+...+...++.....|+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCC
Confidence 888899999999999999875 2 1123334322222223 35589999999999964 33456677888999999999
Q ss_pred HHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 469 LEEAKSTIESMP-MRP----NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 469 ~~~A~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
.+.|..+|++.- ..| ....|...+.--..+|+.+.+..+.+++.+..|+++
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999862 223 345888888888999999999999999999999875
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=8e-12 Score=131.46 Aligned_cols=265 Identities=14% Similarity=0.049 Sum_probs=169.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhcCc--CC-c----chHHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChHHH
Q 036237 221 SWTCLVDGFSKCGKVEIAREIFYRMPN--RN-L----VSWNAMINGYMKAGDVDSACELFDDMEIR---------DLITW 284 (689)
Q Consensus 221 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 284 (689)
.+..+...+...|++++|...|+++.+ ++ . .++..+...|...|++++|...|++.... ...+|
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344455566777777777777777664 22 1 35566666666677777666666654321 23455
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhC-CccchhHHhHHHhhHHh
Q 036237 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG-FVVDGVLGTLLIQMYSK 363 (689)
Q Consensus 285 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~~~~ 363 (689)
..+...|...|++++|+..|++...... +.+ .+....++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666543100 000 01123344445555555
Q ss_pred cCC-----------------HHHHHHHHHhcCC-----C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC
Q 036237 364 CGS-----------------IESALTVFRAISK-----K----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM-KPT 416 (689)
Q Consensus 364 ~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~ 416 (689)
.|+ +++|.+.|++... . ....|..+...|...|++++|+..|++..+... .++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 555 5555555554322 1 233677778888888888888888888765311 011
Q ss_pred ----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------C
Q 036237 417 ----AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESMP-------M 481 (689)
Q Consensus 417 ----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~ 481 (689)
..++..+...+...|++++|...++.......-..+ ...+..+...|...|++++|...+++.- .
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 226777788888899999999988877642211111 4677888899999999999999888761 1
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 482 RP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 482 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
.+ ...++..+...+...|++++|...+++++++.+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11 244778888899999999999999999998776
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=2e-11 Score=136.20 Aligned_cols=162 Identities=16% Similarity=0.196 Sum_probs=137.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGC 458 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 458 (689)
+..+|+.|...|.+.|++++|++.|++..+ +.|+ ..++..+..++.+.|++++|+..|++..+ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 345788888888888888888888888887 4565 45788888888889999999999988873 4565 678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcc
Q 036237 459 LVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~ 536 (689)
+..+|.+.|++++|++.|++. .+.| +...|..+...+...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999998876 3445 57789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 036237 537 KVSEVREMMKK 547 (689)
Q Consensus 537 ~A~~~~~~m~~ 547 (689)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887653
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.32 E-value=5.7e-11 Score=120.51 Aligned_cols=265 Identities=12% Similarity=0.019 Sum_probs=161.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhcCc--CC-----cchHHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChHHHH
Q 036237 222 WTCLVDGFSKCGKVEIAREIFYRMPN--RN-----LVSWNAMINGYMKAGDVDSACELFDDMEIR---------DLITWN 285 (689)
Q Consensus 222 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~ 285 (689)
+......+...|++++|...|+++.+ ++ ..++..+...|...|++++|...|++.... ...+|.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33445556677777777777776654 22 244556666666666666666666554311 234555
Q ss_pred HHHHHHHHcCChHHHHHHHHHhccCCCC-cChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhc
Q 036237 286 SMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364 (689)
Q Consensus 286 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 364 (689)
.+...|...|++++|+..+++....... ++.. ....++..+...|...
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHAK 136 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHHc
Confidence 5666666666666666666665431100 0100 0122344444555555
Q ss_pred CC--------------------HHHHHHHHHhcCC-----C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-C
Q 036237 365 GS--------------------IESALTVFRAISK-----K----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM-K 414 (689)
Q Consensus 365 g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~ 414 (689)
|+ +++|.+.+++... . ....+..+...|...|++++|++.+++..+... .
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55 5555555544321 1 123567777778888888888888887664210 1
Q ss_pred CC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CC
Q 036237 415 PT----AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESMP----MR 482 (689)
Q Consensus 415 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~ 482 (689)
++ ..++..+...+...|++++|..+++.......-.++ ...+..+...|...|++++|...++++- ..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11 226677777888888888888888877642211122 4567788888999999999988887751 01
Q ss_pred CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 483 PN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 483 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
++ ..++..+...+...|++++|...+++++++.+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 12 447778888999999999999999999987663
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.29 E-value=8e-11 Score=108.46 Aligned_cols=166 Identities=12% Similarity=0.060 Sum_probs=141.2
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLN 425 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 425 (689)
++.+|..|...|.+.|++++|++.|++..+ .++.+|..+...|.+.|++++|+..+.+.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 567788899999999999999999998764 46778999999999999999999999998874 344 556777778
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDI 503 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 503 (689)
.+...++++.|...+...... .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888999999999999998842 2334788899999999999999999999886 3334 67799999999999999999
Q ss_pred HHHHHHHHhhcCCCCc
Q 036237 504 GEYAANNLIKVAPDTI 519 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~ 519 (689)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999753
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=6.9e-10 Score=111.65 Aligned_cols=184 Identities=9% Similarity=0.023 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--C-Chh-hHHHHHHHHHHcCCHHHHHHHHHHH
Q 036237 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--K-KVG-HWTAMIVGLGMHGMATQALDLFNKM 408 (689)
Q Consensus 333 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m 408 (689)
++|..+++.+++.-.+.+...+..++..+.+.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555521123344566666666666666666666666554 2 232 5666666666666777777777666
Q ss_pred HHCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC
Q 036237 409 CRMGMKPTAITFIGVLNACS-HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP----MRP 483 (689)
Q Consensus 409 ~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p 483 (689)
.+.. +++...|........ ..|+.++|..+|+...+.. +-+...|..+++.+.+.|++++|..+|++.- ..|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 6532 122233332222211 2566777777776666421 2235666666666666677777776666641 233
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 484 --NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 484 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
....|..++......|+.+.|..+++++++..|+++
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 345666666666666777777777777666666543
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=6.6e-11 Score=123.26 Aligned_cols=195 Identities=12% Similarity=0.019 Sum_probs=116.7
Q ss_pred hHHhHHHhhHHhcCCHHHHHHHHHhcCC-----CC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----
Q 036237 352 VLGTLLIQMYSKCGSIESALTVFRAISK-----KK-----VGHWTAMIVGLGMHGMATQALDLFNKMCRMGM-KPT---- 416 (689)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~---- 416 (689)
.++..+...|...|++++|...+++... ++ ..+++.+...|...|++++|++.|++..+... .++
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3444555555566666655555554432 11 23566666777777777777777776654210 011
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC------CCCC-H
Q 036237 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDY---GIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP------MRPN-F 485 (689)
Q Consensus 417 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~p~-~ 485 (689)
..++..+...+...|++++|...|++...-. +..|+ ..++..+...|.+.|++++|...+++.- ..|. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1256666677777777777777777665311 22122 4566777777777777777777776641 0111 2
Q ss_pred HHHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 486 VIWMSLLSGARNHGN---KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..+..+...+...|+ .+.|...+++. ...|.....+..|+.+|...|++++|...+++..+
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234555666666677 66666666655 23333445677888888888888888888887753
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.27 E-value=1.4e-10 Score=120.83 Aligned_cols=230 Identities=7% Similarity=-0.025 Sum_probs=166.8
Q ss_pred HHHHHHHcCChHHHHHHHHHhccC----CCCc-ChhhHHHHHHHHHcccchhhHHHHHHHHHHhCC------ccchhHHh
Q 036237 287 MIAGYELNGRFMEALELLETMLIG----DVLP-NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF------VVDGVLGT 355 (689)
Q Consensus 287 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~------~~~~~~~~ 355 (689)
....+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+..+.+.-. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444566677777777777776542 1111 123455566666777777777777766655311 11245677
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 036237 356 LLIQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRM----GMKPT-AITFI 421 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~ 421 (689)
.+...|...|++++|.+.|++... ++ ..++..+...|...|++++|++.|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788889999999999998887653 12 237888999999999999999999998762 33243 45788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 036237 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPT---IEHYGCLVDILCRTGY---LEEAKSTIESMPMRPNF-VIWMSLLSG 494 (689)
Q Consensus 422 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 494 (689)
.+...+...|++++|...+++...-..-..+ ...+..+...|...|+ +++|..++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8889999999999999999988742211112 3346778899999999 99999999998655543 367788899
Q ss_pred HHhcCChHHHHHHHHHHhhcCC
Q 036237 495 ARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~p 516 (689)
+...|+++.|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987543
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.4e-11 Score=123.93 Aligned_cols=237 Identities=13% Similarity=0.113 Sum_probs=124.0
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHhccC-------CCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHh------C
Q 036237 280 DLITWNSMIAGYELNGRFMEALELLETMLIG-------DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN------G 346 (689)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g 346 (689)
+..+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3466788888888888888888888887652 11112233344444445555555555555444432 1
Q ss_pred C-ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HH
Q 036237 347 F-VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM------GMKPT-AI 418 (689)
Q Consensus 347 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~ 418 (689)
- +... ..|..+...|...|++++|++.|++..+. +-.|+ ..
T Consensus 106 ~~~~~~-------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVA-------------------------------ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHH-------------------------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHH-------------------------------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 0 1112 34555555555556666665555555442 11122 22
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC----------CC
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDY-----GIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP----------MR 482 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~ 482 (689)
.+..+...+...|++++|..+++.+.... +..|. ...+..+...|.+.|++++|.+.++++- ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45555556666666666666666655321 11121 3455566666666666666666665541 01
Q ss_pred CC-------HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 483 PN-------FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 483 p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+. ...+..+...+...+.+..+...++.+....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 112222233344445666666677777777777777888888888888888888888887654
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=2.7e-10 Score=104.50 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=101.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 464 (689)
|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444445555555555555555544321 123344555555555556666666665555532 1223455566666666
Q ss_pred hcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHH
Q 036237 465 RTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542 (689)
Q Consensus 465 ~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~ 542 (689)
..|++++|.+.++++. .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666541 22356677777777888888888888888888888888888888888888888888888888
Q ss_pred HHHHh
Q 036237 543 EMMKK 547 (689)
Q Consensus 543 ~~m~~ 547 (689)
++..+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=1.9e-11 Score=122.82 Aligned_cols=237 Identities=11% Similarity=0.037 Sum_probs=145.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhcCC--------C---ChHHHHHHHHHHHHcCChHHHHHHHHHhccC------CC
Q 036237 250 LVSWNAMINGYMKAGDVDSACELFDDMEI--------R---DLITWNSMIAGYELNGRFMEALELLETMLIG------DV 312 (689)
Q Consensus 250 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 312 (689)
..++..+...|...|++++|..+|+++.+ . ...+|..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 56788899999999999999999998764 2 3467888999999999999999999998753 11
Q ss_pred -CcChhhHHHHHHHHHcccchhhHHHHHHHHHHhC------C-ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhh
Q 036237 313 -LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG------F-VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384 (689)
Q Consensus 313 -~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g------~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 384 (689)
......+..+...+...|++++|...+..+.+.. . +.... .
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-------------------------------~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK-------------------------------Q 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH-------------------------------H
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH-------------------------------H
Confidence 2234456667777777888888888777766531 1 11222 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCC
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRM------GMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDY------GIEP 451 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p 451 (689)
|..+...|...|++++|++.|+++.+. +..|+ ..++..+...+...|++++|..+++.+.... ...+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 444555555555555555555555442 11222 2245555566666666666666666655310 1111
Q ss_pred Ch-------hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 452 TI-------EHYGCLVDILCRTGYLEEAKSTIESMP-MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 452 ~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
.. ..+..+...+...+.+.+|...+.... ..| +..+|..+...+...|++++|...+++++++.|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 122233334445555666666666653 233 4557889999999999999999999999998774
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=8e-10 Score=111.18 Aligned_cols=211 Identities=9% Similarity=-0.004 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHhCCccchhHHhHHHhhHH-------hcCCH-------HHHHHHHHhcCC----CChhhHHHHHHHHHHc
Q 036237 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYS-------KCGSI-------ESALTVFRAISK----KKVGHWTAMIVGLGMH 395 (689)
Q Consensus 334 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~~ 395 (689)
+|..+++.+++.. +.++.+|..++..+. +.|++ ++|..+|++... .+...|..++..+.+.
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4444455544432 334555555555554 35775 899999998765 2456899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHHH
Q 036237 396 GMATQALDLFNKMCRMGMKPTAI--TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC-RTGYLEEA 472 (689)
Q Consensus 396 g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A 472 (689)
|++++|.++|++..+ +.|+.. .|..+...+.+.|++++|+.+|++..+. .+++...|...+.... ..|++++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998 566543 7888999999999999999999999842 2234555554444432 37999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCC-CchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 473 KSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKV---APD-TIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 473 ~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
..+|++. ... .+...|..++..+...|+.+.|..+|+++++. .|+ ....+..++..+.+.|++++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999986 222 36789999999999999999999999999995 553 56688889999999999999999999987
Q ss_pred hCC
Q 036237 547 KRG 549 (689)
Q Consensus 547 ~~~ 549 (689)
+..
T Consensus 269 ~~~ 271 (308)
T 2ond_A 269 TAF 271 (308)
T ss_dssp HHT
T ss_pred HHc
Confidence 643
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.22 E-value=6.3e-09 Score=107.64 Aligned_cols=259 Identities=12% Similarity=-0.070 Sum_probs=167.9
Q ss_pred HHHHHcCChHHHHHHHHHhccCCCCcChh----hHHHHHHHHHcccchhhHHHHHHHHHHhCCcc-----chhHHhHHHh
Q 036237 289 AGYELNGRFMEALELLETMLIGDVLPNDA----TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV-----DGVLGTLLIQ 359 (689)
Q Consensus 289 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-----~~~~~~~li~ 359 (689)
..+...|++++|...+++.+......+.. .+..+...+...|+++.|...+....+..... ...+...+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455666666666666655432111111 22333344555666666666666554421111 1223455677
Q ss_pred hHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHH
Q 036237 360 MYSKCGSIESALTVFRAISK-------K----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK--P--TAITFIGVL 424 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ll 424 (689)
.|...|++++|.+.+++... + ....+..+...|...|++++|...+++....... | ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 77888888888888776542 1 1235666778888999999999999987763221 1 124567777
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHH
Q 036237 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG-----CLVDILCRTGYLEEAKSTIESMP-MRPN-----FVIWMSLLS 493 (689)
Q Consensus 425 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~ 493 (689)
..+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 888889999999999988864321111111121 23455779999999999998873 2221 335677788
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCC------CchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 494 GARNHGNKDIGEYAANNLIKVAPD------TIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+...|++++|...++++++..+. ....+..++.+|...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 889999999999999998875332 123677889999999999999999988764
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=4.1e-10 Score=120.57 Aligned_cols=178 Identities=11% Similarity=-0.001 Sum_probs=157.3
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 036237 366 SIESALTVFRAISK---KKVGHWTAMIVGLGMHGMA-TQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYF 440 (689)
Q Consensus 366 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 440 (689)
.++++.+.++.... .+...|..+...|...|++ ++|++.|++..+. .|+ ...+..+..++...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35667777766544 3677899999999999999 9999999999884 555 668999999999999999999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCh
Q 036237 441 NMMINDYGIEPTIEHYGCLVDILCRT---------GYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNH--------GNK 501 (689)
Q Consensus 441 ~~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~ 501 (689)
+... .+.|+...+..+...|... |++++|.+.+++. ...| +...|..+..++... |++
T Consensus 161 ~~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9998 4568888999999999999 9999999999986 3334 678999999999998 999
Q ss_pred HHHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 502 DIGEYAANNLIKVAP---DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 502 ~~a~~~~~~~~~~~p---~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
++|+..++++++++| +++..+..++.+|...|++++|.+.+++..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999998763
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=9.7e-10 Score=105.11 Aligned_cols=203 Identities=10% Similarity=0.004 Sum_probs=142.4
Q ss_pred ChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 036237 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVG 391 (689)
Q Consensus 315 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 391 (689)
|...+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++... .+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 45666777777888888888888888888877546666666688888888888888888887654 245577788888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHH
Q 036237 392 LGMHGMATQALDLFNKMCRMGMKPT-A-------ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT---IEHYGCLV 460 (689)
Q Consensus 392 ~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li 460 (689)
|...|++++|++.|++..+. .|+ . ..|..+...+...|++++|+..|+.+. .+.|+ ...+..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 88888888888888888773 444 2 346666677777888888888888877 34555 46677777
Q ss_pred HHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036237 461 DILCRTGYL--EEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529 (689)
Q Consensus 461 ~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 529 (689)
..|...|+. ++|..+. ..+...+..+. ....+.+++|+..++++++++|+++.+...|..+.
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777665543 2222211 12333443333 23445679999999999999999987777776554
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=5.5e-10 Score=106.83 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVD 461 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 461 (689)
..|..+...+...|++++|++.|++..+....++...+..+..++...|++++|+..|+...+ ..|+ ...+..+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHH
Confidence 344444444444555555555555444432213344444444444455555555555554442 2232 344444455
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--CchhHHHHHHHHH
Q 036237 462 ILCRTGYLEEAKSTIESM-PMRP-NF-------VIWMSLLSGARNHGNKDIGEYAANNLIKVAPD--TIGCYVVLSNIYA 530 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~L~~~~~ 530 (689)
.|...|++++|...+++. ...| +. ..|..+...+...|++++|+..++++++++|+ ++.++..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 555555555555554443 1112 22 23444444455555555555555555555555 4455555555554
Q ss_pred hcCCc
Q 036237 531 AAGQW 535 (689)
Q Consensus 531 ~~g~~ 535 (689)
..|+.
T Consensus 165 ~~~~~ 169 (228)
T 4i17_A 165 NNGAD 169 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=1.5e-09 Score=99.46 Aligned_cols=168 Identities=8% Similarity=-0.081 Sum_probs=142.8
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 427 (689)
...+..+...|...|++++|.+.|+++.. .+...|..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34556678888999999999999999876 356788999999999999999999999998752 33566788888999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHH
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-P-MRPNFVIWMSLLSGARNHGNKDIGE 505 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~ 505 (689)
...|++++|..+++.+... .+.+...+..+...|...|++++|.+.++++ . .+.+...|..+...+...|+++.|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999853 3446788899999999999999999999886 2 2346788999999999999999999
Q ss_pred HHHHHHhhcCCCCchh
Q 036237 506 YAANNLIKVAPDTIGC 521 (689)
Q Consensus 506 ~~~~~~~~~~p~~~~~ 521 (689)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998877543
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.17 E-value=5.5e-08 Score=107.21 Aligned_cols=430 Identities=10% Similarity=0.042 Sum_probs=278.5
Q ss_pred hCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hHH
Q 036237 99 FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE---IDL 175 (689)
Q Consensus 99 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~ 175 (689)
+.....+.+..|++.+..+ +-|..+|..++..+.+.+.++.++.+++.++.. ++.....|...+..-.+.|+ ++.
T Consensus 44 ~~~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 44 RVRDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp --CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHH
T ss_pred cccCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHH
Confidence 3345666676777777665 348889999999999999999999999999987 47778889999999889998 999
Q ss_pred HHHHHhhCCC-----CCeehHHHHHHHHHhCCCh--------HHHHHHHhhCC------CC-CcchHHHHHHHHHh----
Q 036237 176 GRRVFDAMDD-----KDLVSWNCLIDGYVKKGEV--------EVAMKLFDEMP------DR-DLFSWTCLVDGFSK---- 231 (689)
Q Consensus 176 A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~------~~-d~~~~~~li~~~~~---- 231 (689)
+..+|++... +++..|...+.-..+.+.. +...++|+... .+ +...|...+.....
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 9999998763 6777888887766555543 23346666532 22 23456665554332
Q ss_pred -----CCChHHHHHHHhhcCcCCcchHHHHHHHHHhcC---CHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHH
Q 036237 232 -----CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG---DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303 (689)
Q Consensus 232 -----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 303 (689)
.++++.+.++|.+++.....-+..+-..|..-. ....+.+++.+ ...+++.|...
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e-----------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGE-----------------LSAQYMNARSL 264 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHH-----------------HHHHHHHHHHH
T ss_pred CcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHH-----------------hhHHHHHHHHH
Confidence 234566777777776521111222222221100 00011111111 01123334444
Q ss_pred HHHhcc--CCC----C-----------c-Ch-------hhHHHHHHHHHccc-------chhhHHHHHHHHHHhCCccch
Q 036237 304 LETMLI--GDV----L-----------P-ND-------ATLVSALSAVAGLA-------VLNKGRWMHSYIVKNGFVVDG 351 (689)
Q Consensus 304 ~~~m~~--~g~----~-----------p-~~-------~t~~~ll~a~~~~~-------~~~~a~~i~~~~~~~g~~~~~ 351 (689)
+.++.. .++ + | .. ..|...+.---..+ ..+....+|+.++..- +...
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCH
Confidence 433210 011 0 1 00 11222221111111 1234556787777753 4577
Q ss_pred hHHhHHHhhHHhcCCHHHHH-HHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------CCC--
Q 036237 352 VLGTLLIQMYSKCGSIESAL-TVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM---------KPT-- 416 (689)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~-- 416 (689)
.+|-..+..+...|+.++|. ++|++... .+...|-..+...-+.|++++|.++|+++..... .|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 88888888888899999996 99988764 3556788888899999999999999999886310 142
Q ss_pred ----------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC-C-CCC
Q 036237 417 ----------AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG-YLEEAKSTIESM-P-MRP 483 (689)
Q Consensus 417 ----------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~-~~p 483 (689)
...|...+....+.|.++.|+.+|..+.+.. ..+....|...+.+-.+.| +.+.|.++|+.. . ...
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 2357777777888899999999999998531 1223445554455545555 489999999876 2 234
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD---TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
+...|...+.-....|+.+.|..+|+++++..|+ ....+...+..-.+.|+.+.+..+.+++.+.-
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6677888888888899999999999999998773 33456677777778999999999999998754
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=1.5e-09 Score=112.69 Aligned_cols=193 Identities=9% Similarity=0.016 Sum_probs=107.2
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHHhcCC-----CC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-H
Q 036237 353 LGTLLIQMYSKCGSIESALTVFRAISK-----KK-----VGHWTAMIVGLGMHGMATQALDLFNKMCRM----GMKPT-A 417 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 417 (689)
++..+...|...|+++.|...+++... ++ ..+++.+...|...|++++|++.|++..+. +-.+. .
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344455555555555555555544331 11 235566666666677777776666665542 11111 2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHH
Q 036237 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDY---GIEPTIEHYGCLVDILCRTGYLEEAKSTIESM----PM--RPN-FVI 487 (689)
Q Consensus 418 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~ 487 (689)
.++..+...+...|++++|...|++...-. +.+....++..+...|.+.|++++|...+++. +. .|. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 245566666667777777777776665311 11112455666677777777777777776654 11 122 223
Q ss_pred HHHHHHHHHhcCC---hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 488 WMSLLSGARNHGN---KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 488 ~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+..+...+...++ ++.|+..+++. ...|+....+..++..|...|++++|...+++..
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444555566 55555555542 1223334566677888888888888887777664
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=9.2e-09 Score=106.72 Aligned_cols=228 Identities=9% Similarity=-0.020 Sum_probs=165.3
Q ss_pred HHHHHHHcCChHHHHHHHHHhccCCC-CcC----hhhHHHHHHHHHcccchhhHHHHHHHHHHhCC-----c-cchhHHh
Q 036237 287 MIAGYELNGRFMEALELLETMLIGDV-LPN----DATLVSALSAVAGLAVLNKGRWMHSYIVKNGF-----V-VDGVLGT 355 (689)
Q Consensus 287 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-----~-~~~~~~~ 355 (689)
....+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+..+.+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677777777777777764311 122 23455566667777777777777777665311 1 1245677
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHH
Q 036237 356 LLIQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRM----GMKPTAITFIG 422 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ 422 (689)
.+...|...|++++|.+.|++... ++ ..+++.+...|...|++++|++.|++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 788889999999999888887653 12 346888899999999999999999998761 21222557888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPT---IEHYGCLVDILCRTGY---LEEAKSTIESMPMRPNF-VIWMSLLSGA 495 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~~ 495 (689)
+...+.+.|++++|..++++......-.++ ...+..+...|...|+ +++|...+++....|+. ..+..+...+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 889999999999999999998854322222 4556777788888898 99999999997644443 3667888889
Q ss_pred HhcCChHHHHHHHHHHhhc
Q 036237 496 RNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~ 514 (689)
...|+++.|...++++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.09 E-value=2.3e-08 Score=103.45 Aligned_cols=232 Identities=10% Similarity=0.021 Sum_probs=139.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccCCCC-cCh----hhHHHHHHHHHcccchhhHHHHHHHHHHh----CCc--c-ch
Q 036237 284 WNSMIAGYELNGRFMEALELLETMLIGDVL-PND----ATLVSALSAVAGLAVLNKGRWMHSYIVKN----GFV--V-DG 351 (689)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~--~-~~ 351 (689)
++.+...+...|++++|...+++....... ++. .++..+...+...|++++|...+....+. +.. | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 344444555555555555555554431100 011 11233344455556666666555555432 111 1 23
Q ss_pred hHHhHHHhhHHhcCCHHHHHHHHHhcCC--C------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHH-
Q 036237 352 VLGTLLIQMYSKCGSIESALTVFRAISK--K------KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA-ITFI- 421 (689)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~- 421 (689)
..+..+...|...|++++|...+++... + ...+|..+...+...|++++|...+++.....-.++. ..+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 4455567777778888888877776532 1 1245777788888889999999998887653212221 1111
Q ss_pred ----HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCH-H
Q 036237 422 ----GVLNACSHAGLVNDGRRYFNMMINDYGIEPT---IEHYGCLVDILCRTGYLEEAKSTIESM-------PMRPNF-V 486 (689)
Q Consensus 422 ----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~ 486 (689)
..+..+...|++++|...++..... ...+. ...+..+...+...|++++|...+++. +..++. .
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 2234466889999999998887632 11111 224567788888999999998888775 111122 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
.+..+..++...|+.++|...+++++++.+
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 566677778889999999999999887544
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=1.1e-09 Score=108.02 Aligned_cols=198 Identities=13% Similarity=0.189 Sum_probs=126.2
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCC-----------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------C
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISK-----------KKVGHWTAMIVGLGMHGMATQALDLFNKMCRM------G 412 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 412 (689)
...++..+...|...|++++|...|+++.. ....+|..+...|...|++++|++.|++.... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 455666677777777777777777766542 12346777788888888888888888877653 1
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-----
Q 036237 413 MKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDY-----GIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP----- 480 (689)
Q Consensus 413 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~----- 480 (689)
-.|+ ..++..+...+...|++++|..+++++.... ...|+ ...+..+...|.+.|++++|...++++-
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1232 3467777778888888888888888776421 11222 4667788888888888888888887651
Q ss_pred -----CCC-CHHHHHHHHHHHHhcCC------hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 481 -----MRP-NFVIWMSLLSGARNHGN------KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 481 -----~~p-~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..+ ....|..+.......+. +..+...++......|..+.++..|+.+|...|++++|..++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122 22234444333333332 23333333333334455667888999999999999999999988765
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.06 E-value=7.3e-10 Score=123.61 Aligned_cols=163 Identities=17% Similarity=0.188 Sum_probs=139.4
Q ss_pred cchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 036237 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVL 424 (689)
Q Consensus 349 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 424 (689)
.+...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++..+ +.|+ ...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 3467788888999999999999999988764 4577899999999999999999999999988 4666 55888999
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 036237 425 NACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNK 501 (689)
Q Consensus 425 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 501 (689)
.++...|++++|++.|++..+ +.|+ ...|+.+..+|.+.|++++|++.|++. ...| +...|..+...+...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 999999999999999999884 4565 788999999999999999999999886 4455 567899999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q 036237 502 DIGEYAANNLIKVAP 516 (689)
Q Consensus 502 ~~a~~~~~~~~~~~p 516 (689)
++|++.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999887554
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=6.9e-09 Score=103.40 Aligned_cols=166 Identities=11% Similarity=0.019 Sum_probs=101.7
Q ss_pred hHHhHHHhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-----
Q 036237 352 VLGTLLIQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGMH-GMATQALDLFNKMCRMGMKPT----- 416 (689)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~----- 416 (689)
.+++.+..+|.+.|++++|+..|++... .+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChH
Confidence 3455555666666666666666555432 11 23567777777775 8888888888877652 221
Q ss_pred --HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH--
Q 036237 417 --AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI-----EHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFV-- 486 (689)
Q Consensus 417 --~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-- 486 (689)
..++..+...+...|++++|+..|+.......-.+.. ..|..+..+|...|++++|...+++. .+.|+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2356777777888888888888888877421111111 14666777788888888888888775 3334321
Q ss_pred ----HHHHHHHHHH--hcCChHHHHHHHHHHhhcCCCCc
Q 036237 487 ----IWMSLLSGAR--NHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 487 ----~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
.+..++.++. ..++++.|+..++++.+++|...
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 2344555554 34567778887777777777543
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=2.3e-08 Score=97.66 Aligned_cols=204 Identities=11% Similarity=0.040 Sum_probs=132.9
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCC--C-C---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHHH
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISK--K-K---VGHWTAMIVGLGMHGMATQALDLFNKMCRMGM-KPT-AITFI 421 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 421 (689)
+...+..+...+.+.|++++|...|+++.. | + ...|..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 345555566677777777777777777654 2 2 34566677777777777777777777776321 112 23455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 036237 422 GVLNACSH--------AGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492 (689)
Q Consensus 422 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 492 (689)
.+..++.. .|++++|...|+.+.+. .|+ ......+..+....+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55556666 77777777777777643 233 22222221111111111 11246677
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCC---chhHHHHHHHHHhc----------CCcchHHHHHHHHHhCCCccCCcccEE
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDT---IGCYVVLSNIYAAA----------GQWDKVSEVREMMKKRGFRKDPGSSSI 559 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~ 559 (689)
..+...|+++.|+..++++++..|++ +..+..++.+|... |++++|...++++.+.. |
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p----- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P----- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T-----
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C-----
Confidence 88999999999999999999999984 45788999999877 89999999999987633 1
Q ss_pred EECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHHH
Q 036237 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594 (689)
Q Consensus 560 ~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 594 (689)
.+|...++...+.++...+.+
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 234556777777777776654
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=5.9e-08 Score=95.01 Aligned_cols=174 Identities=10% Similarity=-0.002 Sum_probs=112.7
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 036237 370 ALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 370 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 445 (689)
|+..|++... ++..++..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555655442 3444555667777777888888888777665442223 33566666777778888888888877763
Q ss_pred hcCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-
Q 036237 446 DYGIEP-----TIEHYGCLVDI--LCRTG--YLEEAKSTIESMP-MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV- 514 (689)
Q Consensus 446 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 514 (689)
..| +..+...|..+ ....| ++++|..+|+++. ..|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 345 23444444443 22233 7888888888763 2355333344444777788888888888877665
Q ss_pred ---------CCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 515 ---------APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 515 ---------~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+|+++.++..++..+...|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 47788888777777777776 778888888764
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=9.1e-09 Score=102.50 Aligned_cols=200 Identities=8% Similarity=-0.033 Sum_probs=144.9
Q ss_pred chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHH
Q 036237 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGMHGMATQA 401 (689)
Q Consensus 331 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 401 (689)
++++|...+..+ ...|...|++++|.+.|++... .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 4457788999999988887653 12 45889999999999999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHH
Q 036237 402 LDLFNKMCRMGM---KPT--AITFIGVLNACSHA-GLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEE 471 (689)
Q Consensus 402 ~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 471 (689)
+..|++..+... .+. ..++..+...+... |++++|+..|++...-..-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998876311 111 34788888999996 9999999999998742211111 3568889999999999999
Q ss_pred HHHHHHhCC-CCC---CH-----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh-----HHHHHHHHH--hcCCc
Q 036237 472 AKSTIESMP-MRP---NF-----VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC-----YVVLSNIYA--AAGQW 535 (689)
Q Consensus 472 A~~~~~~~~-~~p---~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~L~~~~~--~~g~~ 535 (689)
|...+++.. ..| +. ..|..+..++...|+++.|+..++++++++|+.... +..|+..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999862 222 21 257788888999999999999999999999976543 345666664 45667
Q ss_pred chHHHHHHHH
Q 036237 536 DKVSEVREMM 545 (689)
Q Consensus 536 ~~A~~~~~~m 545 (689)
++|...++.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 7777766543
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=1.3e-09 Score=96.56 Aligned_cols=136 Identities=10% Similarity=0.034 Sum_probs=86.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHH
Q 036237 394 MHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEE 471 (689)
Q Consensus 394 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 471 (689)
..|++++|++.+++... ..|+ ...+..+...|...|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++
T Consensus 9 ~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHH
Confidence 34455555555555433 2222 22344455555555666666666655552 2333 5566666666666666666
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH-HHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 472 AKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEY-AANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 472 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
|...|++. ...| +...|..+...+...|+.++|.. .++++++++|+++.+|.....++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 66666654 2344 56678888888888888876555 4689999999999999988888887775
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.94 E-value=3.7e-08 Score=96.90 Aligned_cols=164 Identities=12% Similarity=0.058 Sum_probs=99.4
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK-------K----KVGHWTAMIVGLGMHGMATQALDLFNKMCRM------GM 413 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 413 (689)
..++..+...|...|++++|.+.|+++.. + ...+|..+...|...|++++|+..|++..+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455556666666666666666655432 1 2346777777888888888888888877663 11
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCCC-hhHHHHHHHHHHhcC------CHHHHHHHHHhC
Q 036237 414 KPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDY------GIEPT-IEHYGCLVDILCRTG------YLEEAKSTIESM 479 (689)
Q Consensus 414 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~g------~~~~A~~~~~~~ 479 (689)
.|+ ..++..+...+...|++++|..+++.+.+.. ...+. ...+..+...+...+ .+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 333 3467777788888888888888888776421 12222 333444444443322 345555555555
Q ss_pred C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 480 P-MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 480 ~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
. ..| ...++..+...+...|++++|...++++++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 223 3457888999999999999999999998864
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=3.7e-08 Score=96.20 Aligned_cols=200 Identities=8% Similarity=-0.026 Sum_probs=141.9
Q ss_pred ChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccc--hhHHhHHHhhHHhcCCHHHHHHHHHhcCC--C-C---hhhHH
Q 036237 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD--GVLGTLLIQMYSKCGSIESALTVFRAISK--K-K---VGHWT 386 (689)
Q Consensus 315 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~ 386 (689)
+...+......+...|++++|...+..+++...... ...+..+...|.+.|++++|...|++... | + ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445666677788899999999999999988753221 56778899999999999999999998865 2 2 34677
Q ss_pred HHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 036237 387 AMIVGLGM--------HGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457 (689)
Q Consensus 387 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 457 (689)
.+..++.. .|++++|+..|++..+. .|+.. ....+ ..+..+... -...+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHHHH
Confidence 88888988 99999999999999884 45532 22111 111111100 012255
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHhhcCCCCch--
Q 036237 458 CLVDILCRTGYLEEAKSTIESM-PMRPN----FVIWMSLLSGARNH----------GNKDIGEYAANNLIKVAPDTIG-- 520 (689)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~-- 520 (689)
.+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|+..++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6778888899999998888876 22232 44677777777765 8899999999999999998864
Q ss_pred -hHHHHHHHHHhcCCc
Q 036237 521 -CYVVLSNIYAAAGQW 535 (689)
Q Consensus 521 -~~~~L~~~~~~~g~~ 535 (689)
++..+..++.+.|++
T Consensus 233 ~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 233 TAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 334444444444443
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.90 E-value=6.2e-09 Score=116.59 Aligned_cols=167 Identities=10% Similarity=-0.008 Sum_probs=139.5
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 036237 362 SKCGSIESALTVFRAIS-----------KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSH 429 (689)
Q Consensus 362 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 429 (689)
...|++++|++.|++.. ..+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 67899999999998876 245678888999999999999999999999873 454 5578888889999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 036237 430 AGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEY 506 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 506 (689)
.|++++|...|++..+ +.|+ ...|..+..+|.+.|++++ .+.|+++ ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999884 3454 6788899999999999999 8888876 3344 66789999999999999999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 507 ~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
.++++++++|+++.++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999987766
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=3.1e-08 Score=84.99 Aligned_cols=129 Identities=16% Similarity=0.240 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 463 (689)
.|..++..+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 45556666666666666666666665532 123344445555555555555555555555421
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHH
Q 036237 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543 (689)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~ 543 (689)
.+.+...|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|...++
T Consensus 65 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 65 -----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 112344555555666666666666666666666666666666667777777777777777766
Q ss_pred HHHh
Q 036237 544 MMKK 547 (689)
Q Consensus 544 ~m~~ 547 (689)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=4.9e-08 Score=83.67 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=90.9
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036237 353 LGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 429 (689)
.+..+...|...|++++|.+.|+++.. .+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567788999999999999999998754 467789999999999999999999999998753 3345577777788888
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036237 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (689)
.|++++|..+++.+... .+.+...+..++..|.+.|++++|...+++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 88888888888887742 122344444455555555555555444443
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.89 E-value=7.7e-08 Score=91.58 Aligned_cols=180 Identities=12% Similarity=0.032 Sum_probs=122.5
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HH
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK--KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI----TF 420 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 420 (689)
...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455566778888888888888888764 32 246777888888888888888888888873 44432 33
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 036237 421 IGVLNACSH------------------AGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMPM 481 (689)
Q Consensus 421 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 481 (689)
..+..++.. .|+.++|...|+.+++ ..|+ ...+.++..+. .+.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~----~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLV----FLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHH----HHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHH----HHHHHH--------
Confidence 334444433 4667777777777763 2343 22222111110 000000
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 036237 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI---GCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 482 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~ 550 (689)
......+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123456678899999999999999999999876 5689999999999999999999999887654
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=5.6e-08 Score=96.40 Aligned_cols=176 Identities=10% Similarity=0.001 Sum_probs=139.8
Q ss_pred CHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 366 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
..+...+.+......+...+..+...+.+.|++++|+..|++..+ ..|+ ...+..+...+...|++++|...++.+.
T Consensus 101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 344555566665555666777888889999999999999999887 4564 4577888889999999999999999887
Q ss_pred HhcCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC--c
Q 036237 445 NDYGIEPTIEHYGC-LVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT--I 519 (689)
Q Consensus 445 ~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~ 519 (689)
. ..|+...... ....+.+.|+.++|...+++. ...| +...+..+...+...|++++|+..++++++.+|++ .
T Consensus 179 ~---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 179 L---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp G---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred h---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 3 3566443332 233466778888888888775 2334 67799999999999999999999999999999987 8
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 520 GCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 520 ~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
.++..|+.+|...|+.++|...+++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 899999999999999999998887654
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.86 E-value=2.6e-07 Score=90.49 Aligned_cols=180 Identities=12% Similarity=0.032 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036237 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK-----KVGHWTAMIVGLGMHGMATQALDLFNKMC 409 (689)
Q Consensus 335 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 409 (689)
+...++..+..+ .++......+..+|...|++++|++++.+.... +...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555444 344444557788888889999999999887432 45577788899999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHH--HhccC--cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 036237 410 RMGMKP-----TAITFIGVLNA--CSHAG--LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480 (689)
Q Consensus 410 ~~g~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 480 (689)
+ ..| +..+...+..+ ....| +..+|..+|+++.. -.|+......+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7 467 35566666655 33334 89999999999874 34553333444558999999999999987642
Q ss_pred C-----------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhH
Q 036237 481 M-----------RP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522 (689)
Q Consensus 481 ~-----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 522 (689)
. .| |+.+...++......|+ .|.++++++.+..|++|...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 1 24 55667677767677787 88999999999999987443
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=2.2e-07 Score=87.45 Aligned_cols=172 Identities=8% Similarity=-0.083 Sum_probs=131.2
Q ss_pred HHHHHHhcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 036237 370 ALTVFRAISK-KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG----LVNDGRRYFNMMI 444 (689)
Q Consensus 370 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 444 (689)
|.+.|++..+ .++.++..|...|...+++++|++.|++..+.| +...+..|...|.. + +.++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3344443332 466677777777888888888888888887765 45566666666666 6 7888888888886
Q ss_pred HhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCChHHHHHHHHHHh
Q 036237 445 NDYGIEPTIEHYGCLVDILCR----TGYLEEAKSTIESMP-MRPN---FVIWMSLLSGARN----HGNKDIGEYAANNLI 512 (689)
Q Consensus 445 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 512 (689)
+. -+...+..|..+|.. .+++++|.+.+++.- ..|. +..+..|...|.. .++.+.|+..++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 42 356677778888877 788999999988864 3342 7788888888888 789999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhc-C-----CcchHHHHHHHHHhCCC
Q 036237 513 KVAPDTIGCYVVLSNIYAAA-G-----QWDKVSEVREMMKKRGF 550 (689)
Q Consensus 513 ~~~p~~~~~~~~L~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 550 (689)
+. |.++.++..|+.+|... | ++++|..++++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66778999999999865 3 89999999999887664
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.79 E-value=3.2e-08 Score=87.45 Aligned_cols=122 Identities=9% Similarity=-0.088 Sum_probs=102.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHG 499 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 499 (689)
|...+...|++++|+..++... ...|+ ...+-.+..+|.+.|++++|.+.|++. ...| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445667889999999998876 34454 456678999999999999999999986 3445 6789999999999999
Q ss_pred ChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHH-HHHHHh
Q 036237 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV-REMMKK 547 (689)
Q Consensus 500 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~-~~~m~~ 547 (689)
+++.|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765 576665
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.76 E-value=6.4e-08 Score=88.15 Aligned_cols=76 Identities=17% Similarity=0.120 Sum_probs=59.6
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC--chhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 472 AKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT--IGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 472 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|...+++. ...| +...+..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|...+++...
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 44444443 2234 57788888888999999999999999999998864 55888999999999999999988887653
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.75 E-value=4.9e-08 Score=86.08 Aligned_cols=102 Identities=11% Similarity=-0.037 Sum_probs=90.0
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHH
Q 036237 448 GIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524 (689)
Q Consensus 448 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 524 (689)
.+.|+ ...+..+...|.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45555 567788888999999999999999886 3344 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 525 LSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 525 L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
++.+|.+.|++++|...+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988743
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.74 E-value=1.6e-07 Score=88.22 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=97.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 036237 388 MIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCR 465 (689)
Q Consensus 388 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 465 (689)
+...|.+.|++++|+..|++..+ ..|+ ...+..+..++...|++++|...|+++.+ +.|+ ...+..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHH
Confidence 88899999999999999999988 4564 56788888999999999999999999984 3454 7788888888876
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 466 TGY--LEEAKSTIESMPMRPNF--VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 466 ~g~--~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
.|. .+++...++... .|+. ..|..+..++...|++++|+..+++++++.|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445566666653 3443 345556667778899999999999999999964
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.74 E-value=1e-07 Score=104.62 Aligned_cols=159 Identities=13% Similarity=0.027 Sum_probs=124.2
Q ss_pred cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 036237 364 CGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRY 439 (689)
Q Consensus 364 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 439 (689)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998875 35678999999999999999999999999884 554 56888889999999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHhhc
Q 036237 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNH---GNKDIGEYAANNLIKV 514 (689)
Q Consensus 440 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 514 (689)
|++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999852 2334788999999999999999999999986 2334 677899999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 036237 515 APDTIGCYVVLS 526 (689)
Q Consensus 515 ~p~~~~~~~~L~ 526 (689)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988887776
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.69 E-value=6.8e-08 Score=85.09 Aligned_cols=101 Identities=10% Similarity=0.070 Sum_probs=86.5
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHH
Q 036237 448 GIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524 (689)
Q Consensus 448 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 524 (689)
.+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 34453 566777888888999999999998876 2334 77889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhC
Q 036237 525 LSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 525 L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
++.+|...|++++|...+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988753
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.69 E-value=2.6e-07 Score=101.47 Aligned_cols=145 Identities=10% Similarity=-0.061 Sum_probs=88.9
Q ss_pred cchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHH
Q 036237 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFN 406 (689)
Q Consensus 330 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 406 (689)
|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56677777777766543 23456677777777777778777777777654 345567777777777777888877777
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 036237 407 KMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT---GYLEEAKSTIESM 479 (689)
Q Consensus 407 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 479 (689)
+..+. .|+ ...+..+..++...|++++|.+.|++..+. .+.+...+..+...|... |++++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77763 343 456777777777777778887777777642 122356677777777777 7777777777765
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.67 E-value=3.6e-07 Score=91.54 Aligned_cols=219 Identities=11% Similarity=0.044 Sum_probs=153.5
Q ss_pred cCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHH
Q 036237 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373 (689)
Q Consensus 294 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 373 (689)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 577888999888776421 110 0 01135666666666543 4567788999988888
Q ss_pred HHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCcHHHHHHH
Q 036237 374 FRAISK-----KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRMG---MKPT--AITFIGVLNACSHAGLVNDGRRY 439 (689)
Q Consensus 374 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 439 (689)
|.+... .+ ..+|+.+...|.+.|++++|+..|++..+.- -.|. ..++..+...+.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 876653 12 3478888999999999999999999876531 1222 3467788888888 999999999
Q ss_pred HHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHHHH
Q 036237 440 FNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESMP----MRPN----FVIWMSLLSGARNHGNKDIGEYA 507 (689)
Q Consensus 440 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~ 507 (689)
|++...-+.-..+ ..++..+...|.+.|++++|...+++.- ..++ ...+..++..+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988743211111 4678889999999999999999998761 1122 23667777778888999999999
Q ss_pred HHHHhhcCCCCchh-----HHHHHHHHHhcCCcchHHH
Q 036237 508 ANNLIKVAPDTIGC-----YVVLSNIYAAAGQWDKVSE 540 (689)
Q Consensus 508 ~~~~~~~~p~~~~~-----~~~L~~~~~~~g~~~~A~~ 540 (689)
+++++ +.|..... ...++.+| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99975432 34555555 5677655554
No 108
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=7.9e-07 Score=88.34 Aligned_cols=164 Identities=7% Similarity=-0.036 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--h
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-A----ITFIGVLNACSHAGLVNDGRRYFNMMINDYGI--EPT--I 453 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~ 453 (689)
..+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...++.......- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455667788899999999999988877432211 1 12334556677888999999999988742211 112 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------C
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESMP----MRPN-----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD------T 518 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 518 (689)
..|+.+...|...|++++|...++++- ..|+ ..++..+...|...|++++|+..+++++++.++ .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578899999999999999999988751 1122 258889999999999999999999999885432 1
Q ss_pred chhHHHHHHHHHhcCCcchH-HHHHHHHH
Q 036237 519 IGCYVVLSNIYAAAGQWDKV-SEVREMMK 546 (689)
Q Consensus 519 ~~~~~~L~~~~~~~g~~~~A-~~~~~~m~ 546 (689)
..+|..++.+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56789999999999999999 77777664
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.66 E-value=8.1e-07 Score=99.42 Aligned_cols=187 Identities=11% Similarity=0.039 Sum_probs=144.0
Q ss_pred HcccchhhHHHHHHHHH--------HhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHc
Q 036237 327 AGLAVLNKGRWMHSYIV--------KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMH 395 (689)
Q Consensus 327 ~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 395 (689)
...|++++|.+.++.+. +. .+.+...+..+...|.+.|++++|.+.|+++.+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66778888888888777 32 244567788888999999999999999998775 4677899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHH
Q 036237 396 GMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAK 473 (689)
Q Consensus 396 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 473 (689)
|++++|++.|++..+ ..|+ ...+..+..++...|++++ +..|+++.+ +.|+ ...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999988 4564 5578888899999999999 999999984 3454 688999999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCC-----hHHHHHHHHHHhhcCCCCch
Q 036237 474 STIESM-PMRPN-FVIWMSLLSGARNHGN-----KDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 474 ~~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 520 (689)
+.++++ ...|+ ...|..+..++...++ .+...++.+.+.++.++++.
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999997 46676 4578888888766555 23333344444445454444
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=8.1e-06 Score=87.17 Aligned_cols=365 Identities=10% Similarity=-0.036 Sum_probs=185.0
Q ss_pred CC-CchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-hHHHH
Q 036237 100 NQ-RSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE-IDLGR 177 (689)
Q Consensus 100 ~g-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~ 177 (689)
.| +...|..+|+.+... .|. ++.+.+..+|++.+.. .|++.+|...+..-.+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 477888888887753 233 8899999999999875 4788899988888877763 35566
Q ss_pred HHHhhCC------CCCeehHHHHHHHHH----hCCChHHHHHHHhhCCCCCcchHHHHHHHHHh---CCChHHHHHHHhh
Q 036237 178 RVFDAMD------DKDLVSWNCLIDGYV----KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSK---CGKVEIAREIFYR 244 (689)
Q Consensus 178 ~~~~~m~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~---~g~~~~A~~~~~~ 244 (689)
.+|+... ..+...|...+.-+. .+|+++.+.++|++...-....+..+-..|.. ......+.++...
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 6666533 235567777776544 34667788888888765211112222222211 1112222222221
Q ss_pred cCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcC----CCChHHHHHHHHHHHHcC--C-----hHHHHHHHHHhccCCCC
Q 036237 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDME----IRDLITWNSMIAGYELNG--R-----FMEALELLETMLIGDVL 313 (689)
Q Consensus 245 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~ 313 (689)
.. +.+..|..+++.+. ..+...|...+.--..++ - .+.+..+|++++... +
T Consensus 149 ~~-----------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p 210 (493)
T 2uy1_A 149 TL-----------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-Y 210 (493)
T ss_dssp HH-----------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-T
T ss_pred Hh-----------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-C
Confidence 10 11222332222221 113345655444322211 0 234566777776532 3
Q ss_pred cChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHH-HHHHHhcC------------CC
Q 036237 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA-LTVFRAIS------------KK 380 (689)
Q Consensus 314 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~------------~~ 380 (689)
.+...|...+.-+...|+++.|..+++..++. +.+...+.. |+...+.++. ..+.+... ..
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccc
Confidence 33455555555566677788888888887777 333333322 2221111111 11111100 00
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS-HAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 459 (689)
....|...+..+.+.+..+.|..+|++. ... .++...|......-. ..++.+.|+.+|+...+.++ -++..+...
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~y 360 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHH
Confidence 1134555555555566677777777766 211 112223321111111 12246777777777665332 123344555
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 036237 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512 (689)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 512 (689)
++...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++.+
T Consensus 361 id~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666677777777777663 234555555555555566555555555544
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.65 E-value=2.4e-07 Score=78.91 Aligned_cols=108 Identities=10% Similarity=-0.003 Sum_probs=70.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGAR 496 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 496 (689)
.+......+.+.|++++|++.|++.++. -+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555556666666666666666666531 1223556666666666667777766666654 2233 4567777777777
Q ss_pred hcCChHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 528 (689)
..|++++|+..++++++++|+++.++..|.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 78888888888888888888777776666554
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=2.7e-06 Score=84.49 Aligned_cols=160 Identities=8% Similarity=-0.023 Sum_probs=119.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHH
Q 036237 387 AMIVGLGMHGMATQALDLFNKMCRMG-MKPTAI----TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYG 457 (689)
Q Consensus 387 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 457 (689)
..+..+...|++++|..++++..... ..|+.. .+..+...+...|++++|...|+.+.....-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888899999999999887632 122221 2334666677788999999999988852222233 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC------chhH
Q 036237 458 CLVDILCRTGYLEEAKSTIESMP--------MRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT------IGCY 522 (689)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 522 (689)
.+...|...|++++|...++++- ..+. ..+|..+...|...|++++|+..+++++++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999998887761 1122 3378899999999999999999999998855432 5689
Q ss_pred HHHHHHHHhcCC-cchHHHHHHHHH
Q 036237 523 VVLSNIYAAAGQ-WDKVSEVREMMK 546 (689)
Q Consensus 523 ~~L~~~~~~~g~-~~~A~~~~~~m~ 546 (689)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 599999988875
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=1.8e-07 Score=79.68 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=90.1
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 449 IEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 449 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
+.|+ ...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5566 467888999999999999999999986 3344 688999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHh
Q 036237 526 SNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999876
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.62 E-value=4e-07 Score=82.79 Aligned_cols=155 Identities=11% Similarity=-0.044 Sum_probs=116.0
Q ss_pred HhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 036237 354 GTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA-CSH 429 (689)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~ 429 (689)
...+...+.+.|++++|...|++... .+...|..+...|.+.|++++|+..|++.... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34466678888999999999998875 46678899999999999999999999987763 4443332222111 122
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChHHH
Q 036237 430 AGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN---FVIWMSLLSGARNHGNKDIG 504 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a 504 (689)
.+...+|...++...+ ..|+ ...+..+...|...|++++|...++++ ...|+ ...|..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2223346788888874 3454 788889999999999999999999886 44453 56888999999999999999
Q ss_pred HHHHHHHhh
Q 036237 505 EYAANNLIK 513 (689)
Q Consensus 505 ~~~~~~~~~ 513 (689)
...+++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.61 E-value=9.7e-07 Score=83.86 Aligned_cols=184 Identities=10% Similarity=-0.053 Sum_probs=131.8
Q ss_pred hhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccc--hhHHhHHHhhHHhcCCHHHHHHHHHhcCC--CC-h---hhHHH
Q 036237 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD--GVLGTLLIQMYSKCGSIESALTVFRAISK--KK-V---GHWTA 387 (689)
Q Consensus 316 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 387 (689)
...+......+...|++++|...+..+++...... ...+..+..+|.+.|++++|+..|+++.+ |+ . ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566778899999999999999998754322 35677789999999999999999999864 32 2 24555
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 036237 388 MIVGLGM------------------HGMATQALDLFNKMCRMGMKPTAIT-FIGVLNACSHAGLVNDGRRYFNMMINDYG 448 (689)
Q Consensus 388 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 448 (689)
+..++.+ .|++++|+..|++..+ ..|+... ..... ..+ .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~----~l~------~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATK----RLV------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHH----HHH------HHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHH----HHH------HHHHHHH----
Confidence 6666654 5789999999999997 4566542 22111 100 0111111
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 449 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|+..++.+....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235678899999999999999886 22343 246888999999999999999999999988887643
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=8.5e-07 Score=83.22 Aligned_cols=124 Identities=9% Similarity=-0.007 Sum_probs=93.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc
Q 036237 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PM-RPNFVIWMSLLSGARNH 498 (689)
Q Consensus 421 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~ 498 (689)
..+...+...|++++|...|+... .|+...+..+...|.+.|++++|...+++. .. +.+...|..+...+...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 334445556666666666665543 355666677777777777777777777664 12 23567888888888889
Q ss_pred CChHHHHHHHHHHhhcCCCCc----------------hhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 499 GNKDIGEYAANNLIKVAPDTI----------------GCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 499 g~~~~a~~~~~~~~~~~p~~~----------------~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
|++++|+..+++++++.|++. .++..++.+|.+.|++++|.+.+++..+..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999888776 889999999999999999999999988643
No 117
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.57 E-value=1.2e-06 Score=82.06 Aligned_cols=184 Identities=11% Similarity=0.006 Sum_probs=111.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhc
Q 036237 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364 (689)
Q Consensus 285 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 364 (689)
-.....+...|++++|+..|++..+. .|+........ .... ...........+...|.+.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~----~~~~--------------~~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT----NVDK--------------NSEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH----HSCT--------------TSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh----hhcc--------------hhhhhHHHHHHHHHHHHHC
Confidence 33445566777778887777777653 33322111000 0000 0011122334477778888
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc--HHHHHH
Q 036237 365 GSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGL--VNDGRR 438 (689)
Q Consensus 365 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~~ 438 (689)
|++++|...|++..+ .+...|..+...|...|++++|+..|++..+ +.|+ ..++..+..++...|. .+.+..
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 888888888887654 4567888888888888888888888888887 4555 4567777776655543 344555
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036237 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFVIWMSLLS 493 (689)
Q Consensus 439 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 493 (689)
.++... ...|....+..+...+...|++++|...|++. ...|+......+..
T Consensus 146 ~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555443 22222233444566677788888888888875 56787765555444
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.56 E-value=2.2e-06 Score=80.51 Aligned_cols=172 Identities=11% Similarity=-0.116 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC-CChhhHHHHHHHHHHcC----CHHHHHHHHHHHH
Q 036237 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-KKVGHWTAMIVGLGMHG----MATQALDLFNKMC 409 (689)
Q Consensus 335 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~ 409 (689)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++..+ .++..+..|...|.. + ++++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 556666777778778888888888887654 456677777777777 6 7888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh----cCCHHHHHHHHHh
Q 036237 410 RMGMKPTAITFIGVLNACSH----AGLVNDGRRYFNMMINDYGIEPT---IEHYGCLVDILCR----TGYLEEAKSTIES 478 (689)
Q Consensus 410 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 478 (689)
+.| +...+..|...+.. .+++++|..+|++..+ ..|+ +..+..|..+|.. .+++++|...|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 755 55666677777776 7888999999888873 3343 6778888888888 7889999999888
Q ss_pred CC-CCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHhhcCC
Q 036237 479 MP-MRPNFVIWMSLLSGARNH-G-----NKDIGEYAANNLIKVAP 516 (689)
Q Consensus 479 ~~-~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 516 (689)
.- ..++...+..|...|... | +.++|...++++.+..+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 63 224566777777777653 3 89999999999888754
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.56 E-value=6.5e-07 Score=88.65 Aligned_cols=162 Identities=8% Similarity=-0.134 Sum_probs=118.9
Q ss_pred ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-H
Q 036237 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG-V 423 (689)
Q Consensus 348 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-l 423 (689)
+.+......+...+...|++++|...|++... .+...+..+...|.+.|++++|+..+++... ..|+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 44555666677778888888888888887754 3566788888888888888888888888766 3565443222 2
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcC
Q 036237 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN---FVIWMSLLSGARNHG 499 (689)
Q Consensus 424 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g 499 (689)
...+...+..++|...++..... -+.+...+..+...|...|++++|...+.++ ...|+ ...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 23355667777788888887742 2334678888888888999999998888876 23343 567888888888889
Q ss_pred ChHHHHHHHHHHhh
Q 036237 500 NKDIGEYAANNLIK 513 (689)
Q Consensus 500 ~~~~a~~~~~~~~~ 513 (689)
+.+.|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 98888888887654
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=5e-07 Score=78.83 Aligned_cols=99 Identities=8% Similarity=-0.003 Sum_probs=84.4
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 449 IEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 449 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3443 455666778888889999999888876 2334 677899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHh
Q 036237 526 SNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+.+|...|++++|...+++..+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.54 E-value=2e-06 Score=80.67 Aligned_cols=144 Identities=8% Similarity=-0.057 Sum_probs=82.5
Q ss_pred hHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 036237 355 TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434 (689)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 434 (689)
..+...+...|++++|.+.|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445555566666666666666555555556666666666666666666666655531 122334555555555555555
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 435 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
+|...|+...+. .|+..... +...| +...| ....|..+..++...|+++.|...++++++
T Consensus 89 ~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555531 11100000 00000 01223 235788888899999999999999999999
Q ss_pred cCCCC
Q 036237 514 VAPDT 518 (689)
Q Consensus 514 ~~p~~ 518 (689)
+.|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 99975
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.52 E-value=1.5e-06 Score=73.01 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=78.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGAR 496 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~ 496 (689)
.+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|...++++- .+.+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4455555555666666666666665532 12234556666666677777777776666641 2235677888888888
Q ss_pred hcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g 533 (689)
..|+++.|...++++++..|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999998888888888776544
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.52 E-value=2.1e-07 Score=91.93 Aligned_cols=189 Identities=8% Similarity=-0.100 Sum_probs=124.1
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNA 426 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 426 (689)
...+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+..+++..+ +.|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 34555666777778888888888876653 3567788888888888888888888888876 3454 4567777788
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 036237 427 CSHAGLVNDGRRYFNMMINDYGIEPTI-EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505 (689)
Q Consensus 427 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 505 (689)
+...|++++|...|+...+. .|+. ..+...+....+.++...... .......++......+ ..+ ..|+.+.|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 88888888888888877632 2221 111112222222111111111 2222333344443333 222 368899999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhc-CCcchHHHHHHHHHh
Q 036237 506 YAANNLIKVAPDTIGCYVVLSNIYAAA-GQWDKVSEVREMMKK 547 (689)
Q Consensus 506 ~~~~~~~~~~p~~~~~~~~L~~~~~~~-g~~~~A~~~~~~m~~ 547 (689)
..++++++++|++......+...+.+. +++++|.++|.++.+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999998877777777777776 778999999988765
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=1.4e-06 Score=77.70 Aligned_cols=125 Identities=10% Similarity=0.045 Sum_probs=86.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 036237 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PM-RPNFVIWMSLLSGARN 497 (689)
Q Consensus 420 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 497 (689)
+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++. .. +.+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444444555556666666666555531 1223555666666666667777776666654 12 2356788888888999
Q ss_pred cCChHHHHHHHHHHhhcCCCCchhHHHHHH--HHHhcCCcchHHHHHHHHH
Q 036237 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSN--IYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 498 ~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~--~~~~~g~~~~A~~~~~~m~ 546 (689)
.|++++|...+++++++.|+++..+..+.. .+...|++++|.+.++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999998877754444 4888899999999988764
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.50 E-value=5.2e-05 Score=80.87 Aligned_cols=335 Identities=11% Similarity=-0.014 Sum_probs=162.1
Q ss_pred CCHHHHHHHHhcccC-CCChhhHHHHHHHHHhCCC-chHHHHHHHHhHhC-CCCC-CcccHHHHHHHHH----hcCChHH
Q 036237 69 NNLHYARSIFDRILQ-HPSLVLYNLLIKCYVFNQR-SHEALTLFCDLLDR-FLLP-DNFTLPCVIKGAA----RLGAIKE 140 (689)
Q Consensus 69 g~~~~A~~~f~~~~~-~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~ 140 (689)
|+.+.+..+|++... .|++..|...+.-..+.+. .+....+|+..... |..| +...|...+..+. ..++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 678888889888764 5788888888877766653 35566777776653 4333 4445555555433 2356778
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------cCChHHHHHHHhhCCC----CCeehHHHHHHHHHhCC-
Q 036237 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAK-------------FGEIDLGRRVFDAMDD----KDLVSWNCLIDGYVKKG- 202 (689)
Q Consensus 141 a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g- 202 (689)
++.+|++++......-...|......-.. .+.+..|+.+++.+.. .+...|...+.--..++
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 88888888874221111222222211100 0122223333322211 12334555444322221
Q ss_pred -C-----hHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHH-HHH
Q 036237 203 -E-----VEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA-CEL 272 (689)
Q Consensus 203 -~-----~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~ 272 (689)
- .+.+..+|+++.. | +...|...+.-+.+.|+.+.|..+|++.... +.... +--.|+...+.++. ..+
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~-l~~~y~~~~e~~~~~~~l 265 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF-LSLYYGLVMDEEAVYGDL 265 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH-HHHHHHHHTTCTHHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH-HHHHHHhhcchhHHHHHH
Confidence 0 2234455655543 2 3445666666666677777777777766543 22111 11122222111111 111
Q ss_pred HHhcC------------CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHc-ccchhhHHHHH
Q 036237 273 FDDME------------IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG-LAVLNKGRWMH 339 (689)
Q Consensus 273 ~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~i~ 339 (689)
.+... ......|-..+....+.+..+.|..+|.+. .. ...+...|......-.. .++.+.|..++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 11110 001234555555555556666666666666 21 11122222211111111 12466666666
Q ss_pred HHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036237 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409 (689)
Q Consensus 340 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 409 (689)
+..++.- +.++..+...++...+.|+.+.|+.+|+++. +....|...+..-...|+.+.+.++++++.
T Consensus 344 e~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 344 SSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666543 2233344445555566666666666666653 234455555555555566555555555544
No 126
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.50 E-value=5.5e-07 Score=90.18 Aligned_cols=197 Identities=8% Similarity=-0.093 Sum_probs=149.9
Q ss_pred cccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036237 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407 (689)
Q Consensus 328 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 407 (689)
..|++++|.+++....+.... . .+...+++++|...|.+. +..|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 357788898888887764321 0 122258899999887754 5678899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036237 408 MCRM----GMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGI--EPT--IEHYGCLVDILCRTGYLEEAKSTIES 478 (689)
Q Consensus 408 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (689)
..+. |-.+. ..+|..+...|...|++++|+..|++...-+.- .|. ..++..+..+|.+ |++++|+..+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 347888889999999999999999987643211 111 4678889999999 999999999987
Q ss_pred CC-CC---CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc------hhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 479 MP-MR---PN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI------GCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 479 ~~-~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
.- +. .+ ..++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 61 11 11 45788899999999999999999999999766543 3677788888999999999999998
Q ss_pred HH
Q 036237 545 MK 546 (689)
Q Consensus 545 m~ 546 (689)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 77
No 127
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.50 E-value=1.8e-05 Score=78.24 Aligned_cols=179 Identities=12% Similarity=0.099 Sum_probs=106.0
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHH----HHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH-
Q 036237 366 SIESALTVFRAISK---KKVGHWTAMIVGL----GMH---GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN- 434 (689)
Q Consensus 366 ~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~- 434 (689)
+++++++.++.+.. ++..+|+.-...+ ... +++++++++++++.+.. +-|...|..-...+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCh
Confidence 55555555555443 2334455443333 333 56667777777666632 223445555555555556655
Q ss_pred -HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC------HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChH-HH
Q 036237 435 -DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY------LEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKD-IG 504 (689)
Q Consensus 435 -~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~-~a 504 (689)
+++++++.+.+. -.-+...|+.-..++.+.|+ ++++++.++++ ... -|...|+-+...+.+.|+.. ..
T Consensus 163 ~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 163 AKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHH
Confidence 666666666632 22334555555555555555 66777776654 222 36667777777777666633 34
Q ss_pred HHHHHHHhhcC---CCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 505 EYAANNLIKVA---PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 505 ~~~~~~~~~~~---p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..+++++++++ |.++.++..|+.+|.+.|+.++|.++++.+.+
T Consensus 241 ~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 241 EEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55666666655 66777777788888877888888888877764
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=1.5e-06 Score=73.82 Aligned_cols=116 Identities=7% Similarity=-0.073 Sum_probs=83.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGAR 496 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~ 496 (689)
.+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++. ... .+...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4455555566666666666666666532 1224556666667777777777777776664 122 35667888888899
Q ss_pred hcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcc
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~ 536 (689)
..|+++.|...++++++..|+++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998888763
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.47 E-value=2.1e-05 Score=77.88 Aligned_cols=157 Identities=10% Similarity=-0.047 Sum_probs=121.0
Q ss_pred HHhhHHhcCCHHHHHHHHHhcCCCC---h------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 036237 357 LIQMYSKCGSIESALTVFRAISKKK---V------GHWTAMIVGLGMHGMATQALDLFNKMCRMGMK-PT----AITFIG 422 (689)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~~~~~~---~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ 422 (689)
.+..+...|++++|.+.+++..... . ..+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677888999999999999876521 1 13334677777788999999999999884322 23 226888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDY----GIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-------PMRPN-FVIWM 489 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 489 (689)
+...|...|++++|..+|+.+.+.. +..+. ..+|..+...|.+.|++++|...+++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999987422 11222 357889999999999999999998875 12222 56889
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHhh
Q 036237 490 SLLSGARNHGN-KDIGEYAANNLIK 513 (689)
Q Consensus 490 ~ll~~~~~~g~-~~~a~~~~~~~~~ 513 (689)
.+...+...|+ +++|...++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999999999876
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.47 E-value=1.5e-06 Score=74.10 Aligned_cols=113 Identities=8% Similarity=-0.017 Sum_probs=74.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PM-RPNFVIWMSLLSGA 495 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~ 495 (689)
.+..+...+...|++++|...|+...+ ..| +...+..+...|...|++++|...+++. .. +.+...|..+...+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 444444555555555555555555542 222 3455555556666666666666666554 11 23566788888888
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
...|++++|+..+++++++.|.+...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888999999999999999999888888888888877654
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=9.1e-07 Score=89.76 Aligned_cols=94 Identities=6% Similarity=-0.073 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
...|..+..+|.+.|++++|...++++ ...| +...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356777888888888888888888776 2333 67789999999999999999999999999999999999999999999
Q ss_pred hcCCcchH-HHHHHHHH
Q 036237 531 AAGQWDKV-SEVREMMK 546 (689)
Q Consensus 531 ~~g~~~~A-~~~~~~m~ 546 (689)
+.|++++| ..+++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 45666664
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=5e-07 Score=87.25 Aligned_cols=181 Identities=10% Similarity=-0.003 Sum_probs=131.3
Q ss_pred hcCCHHHHHHHHHhcCC---CChhhHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--------------
Q 036237 363 KCGSIESALTVFRAISK---KKVGHWTAM-------IVGLGMHGMATQALDLFNKMCRMGMKPTAI-------------- 418 (689)
Q Consensus 363 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 418 (689)
..++.+.|.+.|.++.. .....|+.+ ...+...++..+++..+..-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888888888888765 345578777 4556666666666665555443 344322
Q ss_pred --------HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 036237 419 --------TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF----V 486 (689)
Q Consensus 419 --------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 486 (689)
....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123355667788999999999988763 3455436666777889999999999999876433433 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcC--CC-CchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVA--PD-TIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
.+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67788888999999999999999987633 54 4457788899999999999999999998763
No 133
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.42 E-value=6.6e-05 Score=74.11 Aligned_cols=222 Identities=9% Similarity=-0.014 Sum_probs=150.1
Q ss_pred HHHHHHHHHhccCCCCcChhh-HHHHHHHHHccc--chhhHHHHHHHHHHhCCccchhHHhHHHhhH----Hhc---CCH
Q 036237 298 MEALELLETMLIGDVLPNDAT-LVSALSAVAGLA--VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY----SKC---GSI 367 (689)
Q Consensus 298 ~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~----~~~---g~~ 367 (689)
++|++++..++. +.|+..| ++.--..+...+ .++++...++.++.... .+..+++.-...+ .+. +++
T Consensus 50 ~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCH
Confidence 455555555554 2333333 233333334444 55555555555555432 2233333322222 333 678
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc------HHHH
Q 036237 368 ESALTVFRAISK---KKVGHWTAMIVGLGMHGMAT--QALDLFNKMCRMGMKPTAITFIGVLNACSHAGL------VNDG 436 (689)
Q Consensus 368 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~~a 436 (689)
+++.+.++.+.+ ++..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+.+.+. ++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 888888888765 56778888888888889888 9999999999854 2345567666666666666 8999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036237 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE-AKSTIESMP-M----RPNFVIWMSLLSGARNHGNKDIGEYAANN 510 (689)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 510 (689)
++.++.++. --+-|...|+.+..++.+.|+..+ +..+..+.- . ..+...+..+...+.+.|+.++|.++++.
T Consensus 206 l~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 206 LNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999884 234457889999999999998544 556776652 1 24778899999999999999999999999
Q ss_pred Hhh-cCCCCchhHHHH
Q 036237 511 LIK-VAPDTIGCYVVL 525 (689)
Q Consensus 511 ~~~-~~p~~~~~~~~L 525 (689)
+.+ .+|.....+...
T Consensus 284 l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHTTCGGGHHHHHHH
T ss_pred HHhccChHHHHHHHHH
Confidence 997 899776555443
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=2.8e-06 Score=72.12 Aligned_cols=94 Identities=11% Similarity=0.032 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 531 (689)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45566677777888888888887765 2233 677888888888999999999999999999999998899999999999
Q ss_pred cCCcchHHHHHHHHHh
Q 036237 532 AGQWDKVSEVREMMKK 547 (689)
Q Consensus 532 ~g~~~~A~~~~~~m~~ 547 (689)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 9999999999888765
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.37 E-value=9.4e-07 Score=85.36 Aligned_cols=136 Identities=10% Similarity=-0.069 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT--IEHYGCLVDI 462 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~ 462 (689)
+-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566777888888888888887763 455545445555778888899998888755421 1 121 2367778888
Q ss_pred HHhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 463 LCRTGYLEEAKSTIESMP---MRPN--FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
+.+.|++++|+..|++.. ..|. ...+..+..++...|+.++|...|+++...+|+ +.+...|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 999999999999998872 2143 346778888899999999999999999999997 6555444
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.37 E-value=1.2e-06 Score=79.48 Aligned_cols=119 Identities=8% Similarity=0.048 Sum_probs=83.9
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCCh--HH
Q 036237 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSG-ARNHGNK--DI 503 (689)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~-~~~~g~~--~~ 503 (689)
..|++++|...++..... .+.+...+..+...|...|++++|...++++ ... .+...|..+... +...|++ +.
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 455666666666666532 1234566667777777777777777777665 122 356677777777 6778887 88
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
|+..++++++.+|+++..+..++.+|...|++++|...+++..+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8899999988889888888889999999999999999888887643
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.35 E-value=1e-05 Score=80.17 Aligned_cols=161 Identities=9% Similarity=-0.068 Sum_probs=119.8
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHHhcCC--C-Ch------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 036237 353 LGTLLIQMYSKCGSIESALTVFRAISK--K-KV------GHWTAMIVGLGMHGMATQALDLFNKMCRMGM---KPT--AI 418 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 418 (689)
.+...+..+...|++++|.+.+....+ + .. ..+..+...+...|++++|+..|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334466778889999999988876543 1 11 2344566677888999999999999875321 122 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-CH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-----IEHYGCLVDILCRTGYLEEAKSTIESMP-------MRP-NF 485 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p-~~ 485 (689)
+++.+...|...|++++|..+|+++.......|+ ..++..+...|.+.|++++|...+++.- ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999988732222222 2588899999999999999999998751 111 15
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHHhh
Q 036237 486 VIWMSLLSGARNHGNKDIG-EYAANNLIK 513 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 513 (689)
.+|..+...+...|+.+.| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6888999999999999999 777888776
No 138
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=3.3e-06 Score=69.40 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--CchhHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PM-RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD--TIGCYVVLSNI 528 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~L~~~ 528 (689)
...+..+...+.+.|++++|...+++. .. +.+...|..+...+...|++++|+..++++++..|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455666777777788888888777765 22 235678888888888999999999999999999998 88899999999
Q ss_pred HHhc-CCcchHHHHHHHHHhCC
Q 036237 529 YAAA-GQWDKVSEVREMMKKRG 549 (689)
Q Consensus 529 ~~~~-g~~~~A~~~~~~m~~~~ 549 (689)
|... |++++|.+.+++..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999998887644
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.32 E-value=1.7e-06 Score=76.06 Aligned_cols=103 Identities=9% Similarity=-0.098 Sum_probs=75.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGAR 496 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 496 (689)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4555666677777777777777777632 1224666777777777888888888777775 2233 5677888888999
Q ss_pred hcCChHHHHHHHHHHhhcCCCCchhHH
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIGCYV 523 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~~~~ 523 (689)
..|++++|+..+++++++.|+++....
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 999999999999999999998776543
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.31 E-value=2e-06 Score=72.52 Aligned_cols=94 Identities=14% Similarity=0.034 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~ 532 (689)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888889999999888876 2334 6778999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhC
Q 036237 533 GQWDKVSEVREMMKKR 548 (689)
Q Consensus 533 g~~~~A~~~~~~m~~~ 548 (689)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988753
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.31 E-value=2.4e-06 Score=75.16 Aligned_cols=98 Identities=7% Similarity=0.027 Sum_probs=67.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGA 495 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 495 (689)
.+..+...+.+.|++++|...|+.+.. +.| +...|..+..+|.+.|++++|...|+++ ...| ++..|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 455555566666666666666666663 234 3566666777777777777777777665 2233 466778888888
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCc
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
...|++++|+..+++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888653
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=4.9e-06 Score=77.10 Aligned_cols=116 Identities=15% Similarity=0.026 Sum_probs=56.6
Q ss_pred hcCCHHHHHH---HHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHH
Q 036237 363 KCGSIESALT---VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM----GMKPT-AITFIGVLNACSHAGLVN 434 (689)
Q Consensus 363 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 434 (689)
..|++++|.+ .+..-+......+..+...|...|++++|+..|++.... |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3466666666 443322223445666666666777777777766665541 11111 224555555566666666
Q ss_pred HHHHHHHHhHHhcCCCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036237 435 DGRRYFNMMINDYGIEP-T----IEHYGCLVDILCRTGYLEEAKSTIES 478 (689)
Q Consensus 435 ~a~~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (689)
+|...+++......-.+ + ...+..+...+...|++++|...+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66666655543211111 1 22344444455555555555444443
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.31 E-value=5.2e-06 Score=71.42 Aligned_cols=98 Identities=8% Similarity=-0.002 Sum_probs=81.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036237 451 PTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528 (689)
Q Consensus 451 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 528 (689)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|+..++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34667777777888888888888887765 2233 577888888899999999999999999999999999999999999
Q ss_pred HHhcCCcchHHHHHHHHHhC
Q 036237 529 YAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 529 ~~~~g~~~~A~~~~~~m~~~ 548 (689)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988753
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.28 E-value=3.7e-06 Score=75.21 Aligned_cols=94 Identities=11% Similarity=0.031 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 531 (689)
..+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444555555555555555555543 1222 455556666666666666666666666666666666666666666666
Q ss_pred cCCcchHHHHHHHHHh
Q 036237 532 AGQWDKVSEVREMMKK 547 (689)
Q Consensus 532 ~g~~~~A~~~~~~m~~ 547 (689)
.|++++|...+++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 6666666666665554
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.27 E-value=1.3e-05 Score=66.42 Aligned_cols=107 Identities=10% Similarity=-0.010 Sum_probs=59.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036237 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARN 497 (689)
Q Consensus 420 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 497 (689)
+..+...+...|++++|...|+..... .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 334444444555555555555554421 1123444555555555555555555555543 1122 45566667777777
Q ss_pred cCChHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036237 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528 (689)
Q Consensus 498 ~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 528 (689)
.|++++|...++++++..|+++..+..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 7777777777777777777776666555544
No 146
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.7e-05 Score=69.03 Aligned_cols=108 Identities=10% Similarity=0.029 Sum_probs=63.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036237 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLS 493 (689)
Q Consensus 420 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 493 (689)
+..+...+...|++++|...|+... ...|+ ...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 3333344444444444444444443 12233 344445555555555555555555543 1223 5567777777
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
++...|++++|...+++++++.|+++.....+..+..
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 8888888888888888888888888766666655543
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.25 E-value=7.4e-06 Score=75.83 Aligned_cols=168 Identities=7% Similarity=-0.079 Sum_probs=102.4
Q ss_pred hHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036237 360 MYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 436 (689)
.....|.++++.+.++.... .....|..+...+...|++++|+..|++..+. .|+...+... ..+.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH
Confidence 33444566666666554332 13446777777788888888888888887763 3322111000 00000
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
. .. .....+..+..+|.+.|++++|...+++. ... .+...|..+..++...|+++.|+..+++++++
T Consensus 83 ~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 00 01245667777888888888888887775 223 36778889999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCCcchHH-HHHHHHHhC
Q 036237 515 APDTIGCYVVLSNIYAAAGQWDKVS-EVREMMKKR 548 (689)
Q Consensus 515 ~p~~~~~~~~L~~~~~~~g~~~~A~-~~~~~m~~~ 548 (689)
+|+++.++..+..++...|+.+++. ..+..|...
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998888887776 455555443
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.24 E-value=6.5e-06 Score=74.59 Aligned_cols=126 Identities=10% Similarity=0.056 Sum_probs=87.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCH--H
Q 036237 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI-LCRTGYL--E 470 (689)
Q Consensus 394 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 470 (689)
..|++++|+..|++..... +.+...+..+...+...|++++|...|+.+.+. .+.+...+..+..+ |...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4566777777777766532 224456667777777777777777777777642 12245666777777 6677887 8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhH
Q 036237 471 EAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522 (689)
Q Consensus 471 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 522 (689)
+|...++++ ...| +...|..+...+...|+++.|...+++++++.|+++...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 888888775 2234 567888888899999999999999999999999876544
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.24 E-value=8.6e-06 Score=68.25 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
...+..+...+.+.|++++|.+.++++- .+.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678889999999999999999998862 23467889999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhC
Q 036237 531 AAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 531 ~~g~~~~A~~~~~~m~~~ 548 (689)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=7.7e-06 Score=67.80 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
...+..+...+...|++++|...+++. ... .+...|..+...+...|+++.|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456778889999999999999999986 223 477889999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhC
Q 036237 531 AAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 531 ~~g~~~~A~~~~~~m~~~ 548 (689)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999988764
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.23 E-value=9.3e-06 Score=75.15 Aligned_cols=48 Identities=17% Similarity=-0.004 Sum_probs=27.9
Q ss_pred hcCCHHHHHH---HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 036237 262 KAGDVDSACE---LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309 (689)
Q Consensus 262 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 309 (689)
..|++++|.+ ++..-+.....+++.+...+...|++++|+..+++...
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4566666666 44443333455666677777777777777777766653
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.23 E-value=7.4e-06 Score=69.73 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=88.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036237 452 TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529 (689)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 529 (689)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3677888999999999999999999986 3444 6788999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHHHHhC
Q 036237 530 AAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 530 ~~~g~~~~A~~~~~~m~~~ 548 (689)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988763
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.21 E-value=5.5e-06 Score=70.48 Aligned_cols=94 Identities=9% Similarity=-0.007 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch-------hHHH
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG-------CYVV 524 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 524 (689)
..+..|...|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..+++++++.|+++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566778888888888888888775 3334 5778899999999999999999999999998886643 6778
Q ss_pred HHHHHHhcCCcchHHHHHHHHHh
Q 036237 525 LSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 525 L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999999999998765
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=1.3e-05 Score=69.66 Aligned_cols=97 Identities=12% Similarity=0.035 Sum_probs=88.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHH
Q 036237 452 TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526 (689)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 526 (689)
+...+..+...+.+.|++++|...+++. ...|+ ...|..+...+...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4677888999999999999999999986 45677 678899999999999999999999999999999999999999
Q ss_pred HHHHhcCCcchHHHHHHHHHhC
Q 036237 527 NIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
.+|...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988763
No 155
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.18 E-value=1.9e-05 Score=70.19 Aligned_cols=127 Identities=9% Similarity=-0.061 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 463 (689)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++..... .+.+...+..+...|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 34455555556666666666666655521 123445555555566666666666666665532 122345566666666
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHH--HHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 464 CRTGYLEEAKSTIESM-PMRP-NFVIW--MSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 464 ~~~g~~~~A~~~~~~~-~~~p-~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
.+.|++++|...++++ ...| +...+ ..++..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6666666666666554 1122 33333 2233335556667777766665544
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.18 E-value=1.5e-05 Score=67.52 Aligned_cols=109 Identities=6% Similarity=-0.087 Sum_probs=71.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGAR 496 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 496 (689)
.+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444445555666666666666665531 1223556666666666666766666666654 2233 5667888888888
Q ss_pred hcCChHHHHHHHHHHhhcC------CCCchhHHHHHHHH
Q 036237 497 NHGNKDIGEYAANNLIKVA------PDTIGCYVVLSNIY 529 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~L~~~~ 529 (689)
..|++++|+..++++++++ |+++.....+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888889999999888888 77766666665543
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.18 E-value=1.6e-05 Score=71.00 Aligned_cols=106 Identities=12% Similarity=0.010 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGA 495 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 495 (689)
.+..+...+...|++++|+..|+...+ +.| +...|..+..+|.+.|++++|...+++. ...| +...|..+..++
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455555666666666666666666663 223 4566677777777777777777777765 2334 577889999999
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 527 (689)
...|++++|+..++++++++|+++..+...+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999886655443
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.15 E-value=1e-05 Score=70.34 Aligned_cols=105 Identities=12% Similarity=-0.042 Sum_probs=71.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGAR 496 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 496 (689)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|...+++. ...| ++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444555566666777777776666631 1223556666777777777777777777665 2223 5567788888888
Q ss_pred hcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
..|++++|+..+++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 99999999999999999999887655443
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.14 E-value=1.7e-05 Score=70.70 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 457888888899999999999999999999999999999999999999999999999988776
No 160
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=8.4e-06 Score=71.06 Aligned_cols=63 Identities=8% Similarity=-0.052 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhc-------CCCCchhH----HHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKV-------APDTIGCY----VVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
...|..+..++...|++++|+..+++++++ +|+++..| +..+.++...|++++|...+++..+
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 348888888889999999999999999888 99998899 9999999999999999999998864
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.12 E-value=2.1e-05 Score=66.43 Aligned_cols=96 Identities=10% Similarity=0.011 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
...+..+...+...|++++|...+++. ... .+...|..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 567788889999999999999999986 223 467889999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhC
Q 036237 531 AAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 531 ~~g~~~~A~~~~~~m~~~ 548 (689)
..|++++|...+++..+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999999988764
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.07 E-value=1.6e-05 Score=78.25 Aligned_cols=93 Identities=8% Similarity=-0.110 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036237 88 VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMY 167 (689)
Q Consensus 88 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 167 (689)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+...+...|++++|...++.+++.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344455555555555555555555555431 1133344444444445555555555555544432 23334444444444
Q ss_pred HhcCChHHHHHHHhh
Q 036237 168 AKFGEIDLGRRVFDA 182 (689)
Q Consensus 168 ~~~g~~~~A~~~~~~ 182 (689)
...|++++|...|++
T Consensus 83 ~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 83 LEMESYDEAIANLQR 97 (281)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 445555554444443
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.04 E-value=2.8e-05 Score=66.64 Aligned_cols=99 Identities=9% Similarity=-0.084 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036237 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSG 494 (689)
Q Consensus 417 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 494 (689)
...+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++. ...| +...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 445555556666666666666666665532 1223556666666677777777777666654 2223 56677888888
Q ss_pred HHhcCChHHHHHHHHHHhhcCCC
Q 036237 495 ARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
+...|+++.|+..+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888887776
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.04 E-value=3.6e-05 Score=81.90 Aligned_cols=118 Identities=10% Similarity=0.045 Sum_probs=75.0
Q ss_pred hHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 036237 355 TLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHA 430 (689)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 430 (689)
..+...|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|++.+++..+. .|+ ...+..+..++...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 3345566777888888887776653 34667777777777778888887777777763 443 44666677777777
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH--HHhcCCHHHHHHHHH
Q 036237 431 GLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDI--LCRTGYLEEAKSTIE 477 (689)
Q Consensus 431 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 477 (689)
|++++|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777777642 232 3344444444 666677777777666
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=1.4e-05 Score=67.80 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=56.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---chhHHHHHHHHH
Q 036237 459 LVDILCRTGYLEEAKSTIESMP-MRPN-F---VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT---IGCYVVLSNIYA 530 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~-~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~~~~ 530 (689)
+...+.+.|++++|...|++.- ..|+ . ..+..+..++...|+++.|+..++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 4445555666666666665541 1122 1 355666666677777777777777777777766 556777777777
Q ss_pred hcCCcchHHHHHHHHHh
Q 036237 531 AAGQWDKVSEVREMMKK 547 (689)
Q Consensus 531 ~~g~~~~A~~~~~~m~~ 547 (689)
..|++++|...++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776665
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.02 E-value=0.00053 Score=68.45 Aligned_cols=179 Identities=13% Similarity=0.069 Sum_probs=104.9
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHHc-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH------
Q 036237 366 SIESALTVFRAISK---KKVGHWTAMIVGLGMH-G-MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN------ 434 (689)
Q Consensus 366 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~------ 434 (689)
.++++++.++.+.. ++..+|+.-...+.+. + ++++++++++++.+.. .-|...|..-...+.+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhh
Confidence 35666666655543 3444566555555554 5 6667777777766532 223444544444444444444
Q ss_pred --HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--
Q 036237 435 --DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY-------LEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNK-- 501 (689)
Q Consensus 435 --~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-- 501 (689)
+++++++++++. -.-|...|+....++.+.|+ ++++++.++++ ...| |...|+-+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcc
Confidence 677777777642 23345666666666666665 57777777664 2233 666777766666665543
Q ss_pred ------------------HHHHHHHHHHhhcC------CCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 502 ------------------DIGEYAANNLIKVA------PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 502 ------------------~~a~~~~~~~~~~~------p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.........++... +..+.+...|+++|...|+.++|.++++.+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222233333222 45667788999999999999999999999864
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=7.4e-05 Score=78.45 Aligned_cols=162 Identities=5% Similarity=-0.159 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC-hhH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRM-GMKPTAI----TFIGVLNACSHAGLVNDGRRYFNMMINDY---GIEPT-IEH 455 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~ 455 (689)
+..++..|...|++++|.+.+.++... +..++.. ..+.+-..+...|..++|..+++...... +..+. ...
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 566777777788888887777776542 1111111 22223333445677788877777654321 22222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---CCC----ch
Q 036237 456 YGCLVDILCRTGYLEEAKSTIESM-------PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVA---PDT----IG 520 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 520 (689)
+..|...|...|++++|..++++. ..+|. ..++..++..|...|+++.|...+++++... |+. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 777888888888888888887765 11222 3467777788888888888888888877633 222 23
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 521 CYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 521 ~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45667777778888888887776654
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.01 E-value=3.9e-05 Score=81.24 Aligned_cols=144 Identities=9% Similarity=-0.033 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 382 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+ ... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 446777788888888888888888887762 3332110 0 000000 000 01356777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHH
Q 036237 462 ILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~ 539 (689)
+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|++..++..++.++.+.|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876 2333 67789999999999999999999999999999999999999999999999998876
Q ss_pred H-HHHHHHh
Q 036237 540 E-VREMMKK 547 (689)
Q Consensus 540 ~-~~~~m~~ 547 (689)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4555543
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.01 E-value=1.5e-05 Score=84.95 Aligned_cols=116 Identities=11% Similarity=0.094 Sum_probs=82.8
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKD 502 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 502 (689)
.+...|++++|.+.|++..+ ..|+ ...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34456667777777766663 2333 566777777777777777777777665 2334 5668888888888899999
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHH--HHhcCCcchHHHHHHH
Q 036237 503 IGEYAANNLIKVAPDTIGCYVVLSNI--YAAAGQWDKVSEVREM 544 (689)
Q Consensus 503 ~a~~~~~~~~~~~p~~~~~~~~L~~~--~~~~g~~~~A~~~~~~ 544 (689)
+|+..+++++++.|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999888888888887 8888999999888773
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.01 E-value=5.6e-05 Score=63.80 Aligned_cols=105 Identities=6% Similarity=-0.074 Sum_probs=55.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----C-CCCC----HHHHHHHHH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM----P-MRPN----FVIWMSLLS 493 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~-~~p~----~~~~~~ll~ 493 (689)
+...+...|++++|...|+..... .+.+...+..+...|...|++++|...++++ + ..++ ..+|..+..
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 333344444444444444444321 1122334444444444445555444444443 0 1122 556677777
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
.+...|+++.|...++++++..| ++.....+..+..
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 77888888888888888888777 4555555555443
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.01 E-value=5.2e-05 Score=64.32 Aligned_cols=104 Identities=5% Similarity=-0.047 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI-EHYGCLVD 461 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~ 461 (689)
.|..+...+.+.|++++|++.|++..+ +.|+ ...|..+..++...|++++|+..++..++- .|+. ..+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~-- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH--
Confidence 455556666666666666666666655 2333 334555555555566666666555555421 1110 001000
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
..+|..+..++...|+++.|+..++++++..|+
T Consensus 83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 124566667777778888888888888877773
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.00 E-value=2.1e-05 Score=66.48 Aligned_cols=96 Identities=9% Similarity=0.037 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-------chhHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-P-MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT-------IGCYV 523 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 523 (689)
...+..+...+...|++++|...+++. . .+.+...|..+...+...|+++.|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356778889999999999999999886 2 23467889999999999999999999999999988766 78899
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 524 VLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 524 ~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
.++.+|...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998763
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.00 E-value=0.0011 Score=65.78 Aligned_cols=225 Identities=11% Similarity=0.011 Sum_probs=108.3
Q ss_pred HcCChH-HHHHHHHHhccCCCCcChhhH-HHHHHHHHcccc----------hhhHHHHHHHHHHhCCccchhHHhHHHhh
Q 036237 293 LNGRFM-EALELLETMLIGDVLPNDATL-VSALSAVAGLAV----------LNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360 (689)
Q Consensus 293 ~~g~~~-~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~~~----------~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 360 (689)
+.|.++ +|++++..++.. .|+..|. +.--..+...+. ++++..++..++... +.+..+|+.-.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445443 677777777653 4554442 211111111111 345555555555543 2344455544444
Q ss_pred HHhcC--CHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----
Q 036237 361 YSKCG--SIESALTVFRAISK---KKVGHWTAMIVGLGMHGM-ATQALDLFNKMCRMGMKPTAITFIGVLNACSHA---- 430 (689)
Q Consensus 361 ~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---- 430 (689)
+.+.| .++++...++.+.+ +|..+|+--.-.+...|. ++++++.++++.+.. .-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 44555 36666666666654 455566666555666666 466777777766632 22333444433333332
Q ss_pred ----------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc-----------CCHHHHHHHHHhC-CCCCCHHH
Q 036237 431 ----------GLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRT-----------GYLEEAKSTIESM-PMRPNFVI 487 (689)
Q Consensus 431 ----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~ 487 (689)
+.++++++++...+. ..| |...|+-+-..+.+. +.++++++.++++ ...||. .
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred ccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 345666666666553 223 344555444444444 3355555555554 233432 2
Q ss_pred HHHHHHHH-----HhcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 488 WMSLLSGA-----RNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 488 ~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
|..+..+. ...|..++....+.++++++|...+-|.-|
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 32211111 123444555555555555665544444443
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.00 E-value=5e-05 Score=62.08 Aligned_cols=99 Identities=14% Similarity=0.002 Sum_probs=62.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP---NFVIWMSLLSG 494 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 494 (689)
.+..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444445555556666666666555531 1223455566666666666666666666654 2223 46677777788
Q ss_pred HHhc-CChHHHHHHHHHHhhcCCCCc
Q 036237 495 ARNH-GNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 495 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 519 (689)
+... |++++|+..++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888887654
No 175
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.99 E-value=5.7e-05 Score=76.42 Aligned_cols=129 Identities=9% Similarity=-0.040 Sum_probs=100.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA----------------ITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
+...|..+...|.+.|++++|+..|++..+. .|+. ..|..+..++...|++++|+..|+.+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456777888888888888888888888874 4443 678888888889999999999999888
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHhh
Q 036237 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIG-EYAANNLIK 513 (689)
Q Consensus 445 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 513 (689)
+. -+.+...|..+..+|...|++++|...|+++ ...| +...+..+...+...|+.++| ...+++++.
T Consensus 224 ~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 224 EL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 2234778888899999999999999998876 3334 567888888888888888888 446666664
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.99 E-value=5.2e-06 Score=69.43 Aligned_cols=82 Identities=17% Similarity=0.111 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHH
Q 036237 466 TGYLEEAKSTIESM-PM---RP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540 (689)
Q Consensus 466 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~ 540 (689)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34455555555543 22 13 234566666666666666777777777777777666666677777777777777776
Q ss_pred HHHHHHh
Q 036237 541 VREMMKK 547 (689)
Q Consensus 541 ~~~~m~~ 547 (689)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.97 E-value=2.7e-05 Score=68.62 Aligned_cols=62 Identities=16% Similarity=0.026 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCC------CCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAP------DTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..+..+...+...|++++|...+++++++.+ .....+..++.+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3555666667777777777777777765321 1234677888888888888888888887654
No 178
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.95 E-value=1.4e-05 Score=69.58 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM--------PMRPNF-VIW----MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
.|..+..++.+.|++++|+..+++. .+.|+. ..| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555666666666666666555543 236754 488 999999999999999999999999999988765
Q ss_pred HHHH
Q 036237 522 YVVL 525 (689)
Q Consensus 522 ~~~L 525 (689)
+..+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4433
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.94 E-value=7.5e-05 Score=63.15 Aligned_cols=99 Identities=12% Similarity=0.100 Sum_probs=61.6
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC-h---hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 036237 424 LNACSHAGLVNDGRRYFNMMINDYGIEPT-I---EHYGCLVDILCRTGYLEEAKSTIESM-PMRPN----FVIWMSLLSG 494 (689)
Q Consensus 424 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~ 494 (689)
...+...|++++|...|+.+.+. .|+ . ..+..+...|.+.|++++|...+++. ...|+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 33444555555555555555532 122 1 35555666666666666666666554 12232 4567777788
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
+...|+++.|...++++++..|+++......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 8888899999999999999888876554433
No 180
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.93 E-value=0.00012 Score=67.40 Aligned_cols=94 Identities=9% Similarity=0.006 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC---CC--------------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM-PM---RP--------------NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p--------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
.+..+...+.+.|++++|...|++. .. .| ....|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444455555555555555555543 11 11 136888899999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 517 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+++.++..++.+|...|++++|...+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988763
No 181
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.92 E-value=0.0025 Score=63.59 Aligned_cols=222 Identities=14% Similarity=0.045 Sum_probs=139.0
Q ss_pred cCChHHHHHHHHHhccCCCCcChhh-HHHHHHHHHccc-chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhc-C-CHHH
Q 036237 294 NGRFMEALELLETMLIGDVLPNDAT-LVSALSAVAGLA-VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC-G-SIES 369 (689)
Q Consensus 294 ~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~-g-~~~~ 369 (689)
.+..++|++++.+++.. .|+..| ++.--..+...+ .++++...++.+++.. +.+..+++.-...+.+. + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 34445566666555542 333332 233333333444 3555666666555543 23444555544444444 5 6788
Q ss_pred HHHHHHhcCCC---ChhhHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc------
Q 036237 370 ALTVFRAISKK---KVGHWTAMIVGLGMHGMAT--------QALDLFNKMCRMGMKPTAITFIGVLNACSHAGL------ 432 (689)
Q Consensus 370 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 432 (689)
+++.++.+.+. +..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 88888888764 5567776665555555555 8999999998853 2356677777777777765
Q ss_pred -HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH--------------------HHHHHHHHhCC-C-------CC
Q 036237 433 -VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL--------------------EEAKSTIESMP-M-------RP 483 (689)
Q Consensus 433 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~-~-------~p 483 (689)
+++++++++.++. -.+-|...|+.+-.++.+.|+- .+..++..++. . .+
T Consensus 223 ~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 7889999988884 2233467788888888777764 34444444442 1 25
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHh-hcCCCCchh
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLI-KVAPDTIGC 521 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~ 521 (689)
....+..|+..|...|+.++|.++++.+. +.+|-....
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~y 339 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGY 339 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHH
Confidence 77788999999999999999999999987 578865433
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.91 E-value=7.9e-05 Score=78.84 Aligned_cols=124 Identities=10% Similarity=0.044 Sum_probs=92.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhcC--CCC---C-hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYG--IEP---T-IEHYGCLVDILCRTGYLEEAKSTIESM---------PMRPNF-VIWM 489 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~--~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~ 489 (689)
.+...|++++|+.++++...... +.| + ..+++.|..+|...|++++|+.++++. +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566777777777766653221 222 2 467788888888888888888887765 234544 4788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh-----cCCCCchh---HHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 490 SLLSGARNHGNKDIGEYAANNLIK-----VAPDTIGC---YVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 490 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
.|...|..+|++++|+.+++++++ +.|+.|.+ ...|..++...|++++|..++.+++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876 56776544 4578888899999999999999998754
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.91 E-value=0.0011 Score=65.80 Aligned_cols=216 Identities=10% Similarity=0.030 Sum_probs=149.8
Q ss_pred cccch-hhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCC----------HHHHHHHHHhcCC---CChhhHHHHHHHHH
Q 036237 328 GLAVL-NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS----------IESALTVFRAISK---KKVGHWTAMIVGLG 393 (689)
Q Consensus 328 ~~~~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~ 393 (689)
+.|.+ ++|......++..+. .+..+++.--..+...|. ++++...++.+.. ++..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 33443 367777777776652 233444443333332222 6788888887764 56778888888888
Q ss_pred HcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc----
Q 036237 394 MHGM--ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL-VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT---- 466 (689)
Q Consensus 394 ~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---- 466 (689)
..|+ +++++++++++.+.. +-|...|+.-...+...|. ++++++.++.+++. -+-|...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 8884 899999999999853 3355677766667777787 69999999999852 344567777776666655
Q ss_pred ----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhhcCCCCchhHH
Q 036237 467 ----------GYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNH-----------GNKDIGEYAANNLIKVAPDTIGCYV 523 (689)
Q Consensus 467 ----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~ 523 (689)
+.++++++.+++. ...| |...|+-+-..+... +.+++++..++++++++|++..++.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 5688899988876 2334 677887665555554 4578999999999999999866665
Q ss_pred HHHHHH---HhcCCcchHHHHHHHHHh
Q 036237 524 VLSNIY---AAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 524 ~L~~~~---~~~g~~~~A~~~~~~m~~ 547 (689)
.++... ...|..++....++++++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 554332 246777788888888875
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.88 E-value=6.2e-05 Score=66.20 Aligned_cols=131 Identities=13% Similarity=-0.000 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMK-PT----AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEH 455 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 455 (689)
+..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++.......-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444445555555555555444331100 11 123444555555556666666555554421111111 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036237 456 YGCLVDILCRTGYLEEAKSTIESM-------PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 515 (689)
+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 555666666666666666666554 1111 13356667777788888888888888877643
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.87 E-value=5.3e-05 Score=77.62 Aligned_cols=136 Identities=10% Similarity=-0.021 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHH
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVD 461 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 461 (689)
..|..+...+.+.|++++|++.|++..+. .|+.. ..... +... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHH
Confidence 35777777788888888888888777651 11100 00001 1111 1223 2567888899
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHH
Q 036237 462 ILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~ 539 (689)
+|.+.|++++|.+.++++ ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 4445 57789999999999999999999999999999999999999999998888777665
Q ss_pred H
Q 036237 540 E 540 (689)
Q Consensus 540 ~ 540 (689)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 186
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.87 E-value=6.2e-05 Score=63.22 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=57.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 036237 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNH 498 (689)
Q Consensus 422 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 498 (689)
.+...+...|++++|...|+...+ ..| +...|..+..++.+.|++++|+..+++. ...| +...|..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344455566666666666666653 233 3556666666666666666666666654 2334 456777777788888
Q ss_pred CChHHHHHHHHHHhhcCCCCc
Q 036237 499 GNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 499 g~~~~a~~~~~~~~~~~p~~~ 519 (689)
|++++|+..++++++++|+++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888653
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.0002 Score=75.06 Aligned_cols=123 Identities=11% Similarity=-0.025 Sum_probs=84.2
Q ss_pred HHhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--CCC-HHHHHH
Q 036237 357 LIQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRM--GM--KPT-AITFIG 422 (689)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p~-~~t~~~ 422 (689)
+...+...|+.+.|.+++..... .+ ..++..+...|...|++++|..++++.... +. +|. ..++..
T Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (434)
T 4b4t_Q 101 IEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLL 180 (434)
T ss_dssp HHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 33444456677777776665432 11 236777888899999999999988887653 11 222 236777
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPT-----IEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
++..|...|++++|..+++.......-.++ ...+..++..+...|++++|...|.+.
T Consensus 181 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 181 ESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888899999999999999877643211121 356777888888999999998877654
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=2e-05 Score=79.76 Aligned_cols=147 Identities=12% Similarity=-0.015 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 382 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
...|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 44677788888889999999999999877 3555432 234445554443221 136788889
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHH-HhcCCcchH
Q 036237 462 ILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY-AAAGQWDKV 538 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~-~~~g~~~~A 538 (689)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876 3334 6778999999999999999999999999999999988888888874 455677778
Q ss_pred HHHHHHHHhC
Q 036237 539 SEVREMMKKR 548 (689)
Q Consensus 539 ~~~~~~m~~~ 548 (689)
..+++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888877643
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.84 E-value=2.8e-05 Score=64.87 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=62.2
Q ss_pred cCcHHHHHHHHHHhHHhcCC-CCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 036237 430 AGLVNDGRRYFNMMINDYGI-EPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGE 505 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 505 (689)
.|++++|+..|++..+. +. .|+ ...+..+...|.+.|++++|...+++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45666677777666621 10 232 456677777777777777777777765 2233 5667888888888899999999
Q ss_pred HHHHHHhhcCCCCchhH
Q 036237 506 YAANNLIKVAPDTIGCY 522 (689)
Q Consensus 506 ~~~~~~~~~~p~~~~~~ 522 (689)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99999999888876543
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.83 E-value=5.3e-05 Score=67.36 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc-hhHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI-GCYVVLSNI 528 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~L~~~ 528 (689)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++ .....|..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456778888888888888888888775 2334 577899999999999999999999999999999887 444444433
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=4.7e-05 Score=62.35 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=75.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC------chhHH
Q 036237 452 TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT------IGCYV 523 (689)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 523 (689)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456677788888888888888888775 2233 67788999999999999999999999999999988 77888
Q ss_pred HHHHHHHhcCCcchHHHHHH
Q 036237 524 VLSNIYAAAGQWDKVSEVRE 543 (689)
Q Consensus 524 ~L~~~~~~~g~~~~A~~~~~ 543 (689)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88989888888887765544
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.79 E-value=5e-05 Score=76.87 Aligned_cols=151 Identities=8% Similarity=-0.017 Sum_probs=80.8
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 430 (689)
...+..+...|.+.|++++|...|++....+.... .+...|+..++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45567788889999999999999998764222111 1223334444433221 13677788888899
Q ss_pred CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChHHHHH
Q 036237 431 GLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN-FVIWMSLLSG-ARNHGNKDIGEY 506 (689)
Q Consensus 431 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~g~~~~a~~ 506 (689)
|++++|+..++...+ +.| +...|..+..+|...|++++|...|+++ ...|+ ...+..|... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998884 234 4778888999999999999999999887 35554 3455555544 244567788889
Q ss_pred HHHHHhhcCCCCc
Q 036237 507 AANNLIKVAPDTI 519 (689)
Q Consensus 507 ~~~~~~~~~p~~~ 519 (689)
.+.++++..|+++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999988764
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.75 E-value=0.00011 Score=59.23 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 483 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36778999999999999999999999999999999999999999999999999999999998765
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.72 E-value=0.0012 Score=71.42 Aligned_cols=168 Identities=12% Similarity=0.006 Sum_probs=133.4
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 036237 366 SIESALTVFRAISK---KKVGHWTAMIVGLGMHGM----------ATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAG 431 (689)
Q Consensus 366 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 431 (689)
.-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+. .|. ..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34567777777764 345678777777777777 89999999999884 454 557887777888888
Q ss_pred --cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------
Q 036237 432 --LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG-YLEEAKSTIESM-PMRP-NFVIWMSLLSGARNH-------- 498 (689)
Q Consensus 432 --~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-------- 498 (689)
+++++++.++++.+. -+-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999952 2335677888888888889 899999999887 3444 777898888877663
Q ss_pred ------CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcch
Q 036237 499 ------GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537 (689)
Q Consensus 499 ------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~ 537 (689)
+.++++.+.++++++++|++..++.-+..++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998665
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.71 E-value=0.00033 Score=74.13 Aligned_cols=64 Identities=3% Similarity=-0.060 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
...|..+..++.+.|+++.|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5688999999999999999999999999999999999999999999999999999999998864
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.69 E-value=0.0002 Score=55.93 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
...+..+...|.+.|++++|...+++. ... .+...|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 455666777777788888888777765 222 356788888888999999999999999999999999989988888887
Q ss_pred hcC
Q 036237 531 AAG 533 (689)
Q Consensus 531 ~~g 533 (689)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.69 E-value=0.00019 Score=73.41 Aligned_cols=112 Identities=4% Similarity=-0.017 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 036237 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP-NFVIWMSLLSGAR 496 (689)
Q Consensus 418 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~ 496 (689)
..+..+...+.+.|++++|+..|++..+.. |.. ......+++. ...| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777666310 000 0000111111 1223 4568899999999
Q ss_pred hcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988763
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00014 Score=60.10 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=61.8
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 472 AKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 472 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|.+.+++. ...| +...|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444443 2334 5678888888888999999999999999999999988999999999999999999999988765
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=7.1e-05 Score=65.05 Aligned_cols=83 Identities=8% Similarity=0.038 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 036237 466 TGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGN----------KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533 (689)
Q Consensus 466 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g 533 (689)
.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|+++.+|+.|+++|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 33444454444443 1222 44455555555554443 579999999999999999999999999999875
Q ss_pred -----------CcchHHHHHHHHHhC
Q 036237 534 -----------QWDKVSEVREMMKKR 548 (689)
Q Consensus 534 -----------~~~~A~~~~~~m~~~ 548 (689)
++++|.+.|++..+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh
Confidence 899999999998873
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.49 E-value=0.00057 Score=53.92 Aligned_cols=70 Identities=4% Similarity=-0.048 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 482 RPNFVIWMSLLSGARNHGN---KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 482 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
.+|+..|..+..++...++ .++|...++++++++|+++.+...|+..+.+.|++++|...++++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3577888888888866655 799999999999999999999999999999999999999999999886543
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.48 E-value=0.00019 Score=75.96 Aligned_cols=115 Identities=9% Similarity=-0.045 Sum_probs=88.7
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh-----cCCCCc---hhHH
Q 036237 462 ILCRTGYLEEAKSTIESM---------PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIK-----VAPDTI---GCYV 523 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~ 523 (689)
.+...|++++|+.++++. +..|+ ..+++.|...|...|++++|+.+++++++ +.|++| .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456889999999998775 22344 34789999999999999999999999887 455554 4688
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHHH
Q 036237 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594 (689)
Q Consensus 524 ~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 594 (689)
.|+.+|...|++++|..++++..+--.. .-...||...++...+.+...+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987642111 1123689998888887777766654
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.42 E-value=0.00024 Score=74.05 Aligned_cols=114 Identities=7% Similarity=0.028 Sum_probs=78.4
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh-----cCCCC---chhHH
Q 036237 462 ILCRTGYLEEAKSTIESM---------PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIK-----VAPDT---IGCYV 523 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~ 523 (689)
-+.+.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|++ ...++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344556666666666543 01122 33677777788888888888888887765 34444 44678
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHH
Q 036237 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK 593 (689)
Q Consensus 524 ~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 593 (689)
.|+.+|...|++++|..++++..+--.. .-...||...++...|.+...+|+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999887642110 112468999999888888887776
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00047 Score=56.18 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 483 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
++...|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356678889999999999999999999999999999999999999999999999999999998864
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.28 E-value=0.0023 Score=54.90 Aligned_cols=90 Identities=8% Similarity=-0.172 Sum_probs=50.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh---
Q 036237 459 LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN----HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA--- 531 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~--- 531 (689)
|..+|...+.+++|.+.|++.-...++..+..|...|.. .+|.+.|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333444444444444444443222344455555555554 45666666666666654 345667777777776
Q ss_pred -cCCcchHHHHHHHHHhCCC
Q 036237 532 -AGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 532 -~g~~~~A~~~~~~m~~~~~ 550 (689)
.+++++|..++++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6777777777777666553
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.24 E-value=0.00034 Score=60.75 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=41.5
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcch
Q 036237 471 EAKSTIESM-PMRP-NFVIWMSLLSGARNH-----------GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537 (689)
Q Consensus 471 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~ 537 (689)
+|+..|++. .+.| +...|..+..+|... |++++|+..|+++++++|++......+ .. .++
T Consensus 64 eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al-~~------~~k 136 (158)
T 1zu2_A 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL-EM------TAK 136 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH-HH------HHT
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH-HH------HHh
Confidence 444444443 2233 334555555555544 589999999999999999875332222 22 245
Q ss_pred HHHHHHHHHhC
Q 036237 538 VSEVREMMKKR 548 (689)
Q Consensus 538 A~~~~~~m~~~ 548 (689)
|.++.-.+...
T Consensus 137 a~el~~~~~~~ 147 (158)
T 1zu2_A 137 APQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHHHHS
T ss_pred CHhccCccccc
Confidence 55555555443
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.19 E-value=0.00029 Score=73.24 Aligned_cols=62 Identities=6% Similarity=-0.017 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhh-----cCCCC---chhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIK-----VAPDT---IGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+++.|..+|...|++++|+.+++++++ +.|++ ...|+.|+.+|...|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3566677777777777777777777665 33443 34577888888888888888888887754
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.17 E-value=0.0011 Score=51.54 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+...|..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999999999999999999999999999999999988763
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.06 E-value=0.0027 Score=54.45 Aligned_cols=112 Identities=9% Similarity=-0.052 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 036237 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR----TGYLEE 471 (689)
Q Consensus 396 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 471 (689)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788899999888877 44443 556677777888899999888742 456778888888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCC
Q 036237 472 AKSTIESMPMRPNFVIWMSLLSGARN----HGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 472 A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 516 (689)
|.+.|++.-..-++..+..|...|.. .+|.+.|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999887444577888888888888 7899999999999888653
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.05 E-value=0.0029 Score=65.70 Aligned_cols=93 Identities=14% Similarity=0.011 Sum_probs=63.4
Q ss_pred cCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHH
Q 036237 430 AGLVNDGRRYFNMMINDY--GIEPT----IEHYGCLVDILCRTGYLEEAKSTIESM---------PMRPNFV-IWMSLLS 493 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll~ 493 (689)
.|++++|+.++++..... -+.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666554321 12222 356777777777778877777777665 2345443 7888899
Q ss_pred HHHhcCChHHHHHHHHHHhh-----cCCCCchhH
Q 036237 494 GARNHGNKDIGEYAANNLIK-----VAPDTIGCY 522 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 522 (689)
.|..+|++++|+.+++++++ +.|++|.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999998876 568776443
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.04 E-value=0.05 Score=61.84 Aligned_cols=167 Identities=17% Similarity=0.085 Sum_probs=103.0
Q ss_pred HHHHhCCChHHHHH-HHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 036237 196 DGYVKKGEVEVAMK-LFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD 274 (689)
Q Consensus 196 ~~~~~~g~~~~A~~-~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 274 (689)
......+++++|.+ ++..++ +......++..+.+.|..+.|.++.+.. ..-......+|++++|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHH
Confidence 34455677777777 554433 0112366667777788888887765321 222455677899999988877
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHH
Q 036237 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354 (689)
Q Consensus 275 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 354 (689)
.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-......|- +
T Consensus 677 ~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~ 739 (814)
T 3mkq_A 677 DES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------F 739 (814)
T ss_dssp TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------H
T ss_pred hhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------h
Confidence 664 567899999999999999999999988753 33344444445555555544444444331 1
Q ss_pred hHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036237 355 TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407 (689)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 407 (689)
+....+|.+.|++++|.+++. +.+++++|..+-+.
T Consensus 740 ~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 740 NLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHH
Confidence 223344555666666665543 44566666665544
No 211
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.03 E-value=0.0096 Score=64.42 Aligned_cols=148 Identities=11% Similarity=0.012 Sum_probs=118.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCc----------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036237 396 GMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGL----------VNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464 (689)
Q Consensus 396 g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 464 (689)
...++|++.++++.. +.|+.. .|+.--.++.+.|+ +++++..++.+.+. -+-+..+|+.-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345788999999998 567755 46655555666666 99999999999852 2334678888888888
Q ss_pred hcC--CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc-------
Q 036237 465 RTG--YLEEAKSTIESM-PM-RPNFVIWMSLLSGARNHG-NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA------- 532 (689)
Q Consensus 465 ~~g--~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~------- 532 (689)
+.| ++++|+++++++ .. .-|...|+.-...+...| ..+++...++++++.+|.+..++...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 23 347889999888888889 899999999999999999999999998888774
Q ss_pred -------CCcchHHHHHHHHHh
Q 036237 533 -------GQWDKVSEVREMMKK 547 (689)
Q Consensus 533 -------g~~~~A~~~~~~m~~ 547 (689)
++++++.+.+++...
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 456788877776654
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.02 E-value=0.0045 Score=64.32 Aligned_cols=99 Identities=12% Similarity=-0.038 Sum_probs=63.1
Q ss_pred HHhccCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDY--GIEPT----IEHYGCLVDILCRTGYLEEAKSTIESM---------PMRPNF-VIWM 489 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~ 489 (689)
.+.+.|++++|+.++++..... -+.|+ ..+++.|..+|...|++++|+.+++++ +..|+. .+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445556666666666555321 12222 345666777777777777777766654 233443 3678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh-----cCCCCchhHHH
Q 036237 490 SLLSGARNHGNKDIGEYAANNLIK-----VAPDTIGCYVV 524 (689)
Q Consensus 490 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 524 (689)
.|...|..+|++++|+.+++++++ +.|+.|.+-..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 888888888999999888888876 57877655433
No 213
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.00 E-value=0.0025 Score=52.40 Aligned_cols=79 Identities=13% Similarity=0.097 Sum_probs=52.7
Q ss_pred HHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 036237 436 GRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLI 512 (689)
Q Consensus 436 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 512 (689)
|...|+...+ ..| +...+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555552 233 3566666777777777777777777664 2223 46677778888888888888888888888
Q ss_pred hcCCC
Q 036237 513 KVAPD 517 (689)
Q Consensus 513 ~~~p~ 517 (689)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 87764
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.97 E-value=0.024 Score=56.47 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=27.6
Q ss_pred CCChhhHHHHHHHHH--HcCC---HHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 036237 379 KKKVGHWTAMIVGLG--MHGM---ATQALDLFNKMCRMGMKPTAI-TFIGVLNA 426 (689)
Q Consensus 379 ~~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 426 (689)
..+...|...+.+.. ..+. ..+|+.+|++..+ ..|+.. .+..+..+
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a 242 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALV 242 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 346677777666543 2333 4688888988887 567743 44433333
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.92 E-value=0.0052 Score=52.69 Aligned_cols=90 Identities=10% Similarity=0.027 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhcC-C-CCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCCccc
Q 036237 483 PNFVIWMSLLSGARNHG---NKDIGEYAANNLIKVA-P-DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557 (689)
Q Consensus 483 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 557 (689)
++..+.-.+..++.+.+ +.++|+.+++.+++.+ | ++..+++.|+-+|.+.|++++|.++++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--------- 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------- 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---------
Confidence 56666666666777766 5567777888777776 6 45667778888888888888888888877652
Q ss_pred EEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHHHCCCC
Q 036237 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHV 598 (689)
Q Consensus 558 ~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 598 (689)
+|...++......+.+++++.|++
T Consensus 101 -----------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 101 -----------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 233345555555566666777654
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.75 E-value=0.0052 Score=49.06 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=33.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
+...|..+...|.+.|++++|+..|++..+. .|+ ...|..+..++...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555556666666666666655552 232 3345555555555666666666555554
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.69 E-value=0.013 Score=58.45 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=93.9
Q ss_pred CCCCHHHHHHHHHHHhc-----cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHH----hcC-------CHHHHHHH
Q 036237 413 MKPTAITFIGVLNACSH-----AGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILC----RTG-------YLEEAKST 475 (689)
Q Consensus 413 ~~p~~~t~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~----~~g-------~~~~A~~~ 475 (689)
.+.+...|...+.+... .....+|+.+|++.++ ..|+ ...|..+.-+|. ..+ .+..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 35566677777766443 2446889999999983 5787 344544333332 111 12223332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 476 IESMP-MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 476 ~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
...+. ...++.+|..+...+...|+++.|+..++++++++| +...|..++.++.-.|++++|.+.+++....+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 23332 245788888888888888999999999999999997 56788899999999999999999999887643
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.68 E-value=0.0082 Score=47.49 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=49.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhH
Q 036237 459 LVDILCRTGYLEEAKSTIESM-PMRP-NFV-IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 522 (689)
....+.+.|++++|...+++. ...| +.. .|..+..++...|++++|+..++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455667777888888777765 2234 556 788888888888999999999999999999887666
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.65 E-value=0.12 Score=42.53 Aligned_cols=138 Identities=9% Similarity=0.003 Sum_probs=92.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036237 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (689)
.|..++..++..+.... .+..-|+.++--....-+=+-..++++.+-+-+.+ ..+|++.....
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi~ 82 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVVE 82 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHHH
Confidence 46666666666666542 23334444443333333334444444444332221 24566666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 475 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
.+-.+. .+......-++....+|..+.-.+++..++.-+|.+|.....++++|.+.|+..+|.+++.+.-++|++
T Consensus 83 C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666554 345556677788899999999999999987777778999999999999999999999999999999985
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.65 E-value=0.0037 Score=49.57 Aligned_cols=58 Identities=17% Similarity=0.310 Sum_probs=53.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCch-hHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIG-CYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
....+...|+++.|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 456678899999999999999999999999 9999999999999999999999998864
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.37 E-value=0.11 Score=59.11 Aligned_cols=46 Identities=15% Similarity=0.085 Sum_probs=25.6
Q ss_pred HhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036237 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409 (689)
Q Consensus 362 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 409 (689)
..+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 663 l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3455555555554443 234456666666666666666666666553
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.84 E-value=0.054 Score=43.38 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHH
Q 036237 456 YGCLVDILCRTGYLEEAKSTIESM-----P----MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 526 (689)
+-.|...+.+.|+++.|...++.+ + -.+...++..|..++.+.|+++.|...++++++++|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 334445555555555555444443 0 1234667888999999999999999999999999999877655543
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.77 E-value=0.0017 Score=66.02 Aligned_cols=360 Identities=12% Similarity=0.093 Sum_probs=180.6
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036237 89 LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA 168 (689)
Q Consensus 89 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 168 (689)
.|..|..+....+...+|++.|-+. -|...|..++.++.+.|.+++-...+....+. ..++.+=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHH
Confidence 4666666666666666666554321 24555666666666666666666666555444 234445556666777
Q ss_pred hcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCC------------------------CCcchHHH
Q 036237 169 KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD------------------------RDLFSWTC 224 (689)
Q Consensus 169 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------------------~d~~~~~~ 224 (689)
+.+++.+-++++. .+|+.-...+..-|...|.++.|.-+|..+.. .++.||..
T Consensus 128 k~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 128 KTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp TSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred hhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 7666554433321 24444455555556666666666555555532 25567777
Q ss_pred HHHHHHhCCChHHHH------------------------------HHHhhcCc---CCcchHHHHHHHHHhcCCHHHHHH
Q 036237 225 LVDGFSKCGKVEIAR------------------------------EIFYRMPN---RNLVSWNAMINGYMKAGDVDSACE 271 (689)
Q Consensus 225 li~~~~~~g~~~~A~------------------------------~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 271 (689)
+-.+|...+.+..|. .+++.... .....++-|.-.|+|- +.++-.+
T Consensus 205 V~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmE 283 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMRE 283 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHH
T ss_pred HHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHH
Confidence 777777666654432 22222111 1144566666666665 2333333
Q ss_pred HHHhcC----CC-------ChHHHHHHHHHHHHcCChHHHHHHHHHhccC-----------CC---CcChh---------
Q 036237 272 LFDDME----IR-------DLITWNSMIAGYELNGRFMEALELLETMLIG-----------DV---LPNDA--------- 317 (689)
Q Consensus 272 ~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------g~---~p~~~--------- 317 (689)
-++..- -| ....|..++-.|.+-.+++.|... |... .+ .+|..
T Consensus 284 Hlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FY 360 (624)
T 3lvg_A 284 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFY 360 (624)
T ss_dssp HHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHHHHHHHHHHH
Confidence 332221 11 345688888888888888876532 2111 00 11111
Q ss_pred ------hHHHHHHHHHcccchhhHHHHHHHHHHh----------CCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--
Q 036237 318 ------TLVSALSAVAGLAVLNKGRWMHSYIVKN----------GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-- 379 (689)
Q Consensus 318 ------t~~~ll~a~~~~~~~~~a~~i~~~~~~~----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 379 (689)
-.+-+|.++...=+..++.+++...-.. .-..+..+-.++-+.|....+++.-+...+.-..
T Consensus 361 L~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD 440 (624)
T 3lvg_A 361 LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFD 440 (624)
T ss_dssp TTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSC
T ss_pred HHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc
Confidence 1233444444333333333333221100 0112344455566666666665544443332221
Q ss_pred ----------CChhhHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 036237 380 ----------KKVGHWT-AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448 (689)
Q Consensus 380 ----------~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 448 (689)
.+..-+. .-...|.+++++.+++++.++ ...|.-.+...+.+|+.+-+.++++.....
T Consensus 441 ~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~elaeeLL~yFv~~-- 509 (624)
T 3lvg_A 441 NISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELAEELLQWFLQE-- 509 (624)
T ss_dssp TTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHH--
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 1222222 233456677777777765432 111222333445666666676666666532
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 036237 449 IEPTIEHYGCLVDILCRTGYLEEAKSTI 476 (689)
Q Consensus 449 ~~p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (689)
-+.+.|.+.+-.+...=+.+-++++-
T Consensus 510 --g~~EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 510 --EKRECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp --CSTHHHHHHHHHTSSSSSCHHHHHHH
T ss_pred --CchHHHHHHHHHHhhccChHHHHHHH
Confidence 23344444444444455566666664
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.65 E-value=0.033 Score=53.13 Aligned_cols=87 Identities=11% Similarity=0.100 Sum_probs=69.0
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHhhcCCCC-chhHHHHHHHHHhc-CCcch
Q 036237 469 LEEAKSTIESM-PMRPN---FVIWMSLLSGARN-----HGNKDIGEYAANNLIKVAPDT-IGCYVVLSNIYAAA-GQWDK 537 (689)
Q Consensus 469 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~L~~~~~~~-g~~~~ 537 (689)
..+|...+++. .+.|+ ...|..|...|.+ -|+.+.|++.|+++++++|+. +.+++..+..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555553 34565 4577888888877 499999999999999999975 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 036237 538 VSEVREMMKKRGFRKDPG 555 (689)
Q Consensus 538 A~~~~~~m~~~~~~~~~~ 555 (689)
+.+++++........+|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999877664453
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.46 E-value=0.059 Score=44.32 Aligned_cols=87 Identities=13% Similarity=0.027 Sum_probs=37.7
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCChH
Q 036237 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE---AKSTIESMP-MR-P--NFVIWMSLLSGARNHGNKD 502 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~ll~~~~~~g~~~ 502 (689)
...+..+.+-|...... + .|+..+--.+..++.+.....+ ++.++++.- .. | .....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 33444445555444321 2 1444444455555555554443 444444431 11 2 1112233334444445555
Q ss_pred HHHHHHHHHhhcCCCC
Q 036237 503 IGEYAANNLIKVAPDT 518 (689)
Q Consensus 503 ~a~~~~~~~~~~~p~~ 518 (689)
.|.+.++.+++.+|++
T Consensus 92 ~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 5555555555555544
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.26 E-value=1.3 Score=38.91 Aligned_cols=102 Identities=16% Similarity=0.065 Sum_probs=61.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHH
Q 036237 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337 (689)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 337 (689)
+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456778888888887766 3567888888888888888888888887653 3334444444555555444
Q ss_pred HHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHh
Q 036237 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376 (689)
Q Consensus 338 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (689)
+-+.....|- ++.....+.-.|+++++.++|.+
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444433331 12222333344555555555443
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.22 E-value=0.059 Score=46.11 Aligned_cols=71 Identities=11% Similarity=0.023 Sum_probs=47.4
Q ss_pred CChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 451 PTIEHYGCLVDILCRTG---YLEEAKSTIESM-PMR-P--NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 451 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
++..+.-.+..++.+.+ +.+++..++++. ... | +...+..|.-++.+.|+++.|.+.++.+++++|++..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 44555555555555555 344555555543 112 3 24456677788899999999999999999999988643
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.95 E-value=0.53 Score=39.37 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhcCCC-CchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 483 PNFVIWMSLLSGARNHG---NKDIGEYAANNLIKVAPD-TIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 483 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|+..+--.+..++.+.. +...++.+++.++...|. .-...+.|+-++.+.|++++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444554443 344666677777666663 345666777777777777777777777665
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.74 E-value=0.21 Score=38.95 Aligned_cols=69 Identities=10% Similarity=-0.046 Sum_probs=51.6
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 451 PTIEHYGCLVDILCRTGY---LEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 451 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
+++..+..+..++...++ .++|..++++. ...| ++..+..+...+.+.|+++.|+..++++++.+|+++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 456677777777754444 67888888775 3344 566777888888899999999999999999888743
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.59 E-value=1.2 Score=39.14 Aligned_cols=128 Identities=15% Similarity=0.133 Sum_probs=75.5
Q ss_pred hHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036237 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 439 (689)
....+|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+..+ |..+.--|.-.|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888877766 4566788888888888888888888877643 23333344455666555444
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036237 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511 (689)
Q Consensus 440 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 511 (689)
-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... ....+|..+.|.++.+.+
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 3333321 1 234444555667777777777777653221111 122355556666655443
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.06 E-value=0.0029 Score=64.33 Aligned_cols=234 Identities=14% Similarity=0.080 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCC--CCcchHHHHHHHHHhCCCh
Q 036237 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--RDLFSWTCLVDGFSKCGKV 235 (689)
Q Consensus 158 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~ 235 (689)
.+|..|..++.+.|.+.+|.+.| ++..|+..|..+|....+.|.+++-+..+...++ +++..=+.|+-+|++.+++
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL 132 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL 132 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSS
T ss_pred cHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcH
Confidence 34455555555555555554443 2233444455555555555555555555554443 3444444555555555554
Q ss_pred HHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcC------------------------CCChHHHHHHHHHH
Q 036237 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME------------------------IRDLITWNSMIAGY 291 (689)
Q Consensus 236 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~li~~~ 291 (689)
.+-.+++ ..++..-...+.+-+...|.++.|.-+|..+. ..++.+|-.+-.+|
T Consensus 133 ~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~AC 209 (624)
T 3lvg_A 133 AELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC 209 (624)
T ss_dssp STTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHH
T ss_pred HHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 4322221 12344444445555555555555555554443 22667888888888
Q ss_pred HHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHH
Q 036237 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371 (689)
Q Consensus 292 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 371 (689)
...+++.-|.-.--.+. +.|| ....++..|-..|.+++-..+++..... -.....+++-|.-.|+|- +.++-.
T Consensus 210 vd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlm 282 (624)
T 3lvg_A 210 VDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMR 282 (624)
T ss_dssp HHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHH
T ss_pred hCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHH
Confidence 88888776644433332 1122 1223344456667777766666555421 134567778888888775 334444
Q ss_pred HHHHhcCC----C-------ChhhHHHHHHHHHHcCCHHHHHH
Q 036237 372 TVFRAISK----K-------KVGHWTAMIVGLGMHGMATQALD 403 (689)
Q Consensus 372 ~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~ 403 (689)
+.++.... | ....|.-++-.|.+-.+++.|..
T Consensus 283 EHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 283 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 33332222 2 34578888888888888887754
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.53 E-value=0.27 Score=39.17 Aligned_cols=64 Identities=14% Similarity=0.020 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-------CCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVA-------PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+..-...|...+...|+++.|...++.+++.. +..+.++..|+.+|.+.|++++|..++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45556688889999999999999999998842 33466899999999999999999999998876
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.77 E-value=0.1 Score=49.87 Aligned_cols=81 Identities=11% Similarity=0.124 Sum_probs=46.5
Q ss_pred HHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhc-----CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhc-CCh
Q 036237 434 NDGRRYFNMMINDYGIEPT---IEHYGCLVDILCRT-----GYLEEAKSTIESM-PMRPN--FVIWMSLLSGARNH-GNK 501 (689)
Q Consensus 434 ~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~-g~~ 501 (689)
.+|...+++.. .+.|+ -..|..|...|.+. |+.++|.+.|++. .+.|+ ..++......++.. |+.
T Consensus 180 ~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34444444444 24455 34556666666663 6666666666664 23442 45555556665553 777
Q ss_pred HHHHHHHHHHhhcCCC
Q 036237 502 DIGEYAANNLIKVAPD 517 (689)
Q Consensus 502 ~~a~~~~~~~~~~~p~ 517 (689)
+.+.+.+++++...|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777776664
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.37 E-value=0.51 Score=51.99 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=49.2
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
-|...|+++.|+.++++++...|.+..++..|+.+|.+.|+|+.|.-.+..+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 36678999999999999999999999999999999999999999999998873
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.29 E-value=1.3 Score=36.40 Aligned_cols=78 Identities=12% Similarity=-0.029 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHH
Q 036237 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND---GRRYFNMMINDYGIEP--TIEHYGCLVDILCRTGYLEEAK 473 (689)
Q Consensus 399 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 473 (689)
..+.+-|.+....|. |+..+-..+..++.++....+ ++.+++.+.+. -.| .....-.|.-++.|.|++++|.
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444444443332 444444445555555554443 56666555532 112 1223334445566666666666
Q ss_pred HHHHhC
Q 036237 474 STIESM 479 (689)
Q Consensus 474 ~~~~~~ 479 (689)
+.++.+
T Consensus 95 ~~~~~l 100 (126)
T 1nzn_A 95 KYVRGL 100 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 236
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=92.20 E-value=6.1 Score=35.31 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=45.4
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCC
Q 036237 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGK 234 (689)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~ 234 (689)
+|..+....+..+.+.|+.+....+.+.+..+|...-...+.++.+.|..+..-.+...+..+|...-...+.++.+.++
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34444444444444444433333444444444443333444444444443333333333333444444444444444444
Q ss_pred hHHHHHHHhhcCcCCcchHHHHHHHHHhcCC
Q 036237 235 VEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265 (689)
Q Consensus 235 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 265 (689)
.+....+...+..++..+-...+.++++.+.
T Consensus 106 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 106 ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 3322223333333444444444444444444
No 237
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.62 E-value=17 Score=39.16 Aligned_cols=115 Identities=10% Similarity=0.005 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036237 396 GMATQALDLFNKMCRMG-MKPTAI--TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472 (689)
Q Consensus 396 g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 472 (689)
.+.+.|..+|......+ +.+... ....+.......+...++...+..... ..++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 37788998888876533 222221 122223333344534566666666542 223433344455555678999999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 473 KSTIESMPMRP--NFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 473 ~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
...|+.|+..+ ...-.-=+..+....|+.++|..+++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999986432 222222244466778999999999988875
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.46 E-value=0.81 Score=37.74 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcCCC-CchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 502 DIGEYAANNLIKVAPD-TIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 502 ~~a~~~~~~~~~~~p~-~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..|+.+++.+++.+|. ....+..|+-++.+.|++++|.++.+.+.+
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455555555555552 234555566666666666666666655554
No 239
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.84 E-value=8.9 Score=34.53 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=51.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCh
Q 036237 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKV 235 (689)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~ 235 (689)
|..+-...+..+.+.|+.+....+.+.+..+|...-...+.++.+.|..+..-.+.+.+..+|...-...+.++.+.|+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence 33333333333444443333333333333333333333333444433332222222333333433333344444444433
Q ss_pred HHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Q 036237 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295 (689)
Q Consensus 236 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 295 (689)
+....+...+..++..+-...+.++.+.|..+....+...+..++...-...+.++.+.+
T Consensus 112 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 112 RAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 222222222223344444444444444444332222333333334333333344444443
No 240
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.45 E-value=12 Score=33.73 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=91.2
Q ss_pred ChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcc
Q 036237 172 EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251 (689)
Q Consensus 172 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 251 (689)
+.+....+.+.+..+|...-...+..+.+.|..+..-.+.+.+..+|...-...+.++...+..+....+...+..++..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~ 96 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGW 96 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHH
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHH
Confidence 33444444555555666666666667777776554555555555666666666666777766655444555555556667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccc
Q 036237 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331 (689)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 331 (689)
+-...+.++.+.++.+....+.+.+..++...-...+.++...|.. ++...+.++.. .++...-...+.++...+.
T Consensus 97 vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 97 VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 7777777777777765555555555556665555556666666653 34444555543 2444444555555555544
No 241
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=88.67 E-value=13 Score=33.15 Aligned_cols=149 Identities=12% Similarity=0.115 Sum_probs=69.7
Q ss_pred HHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 036237 77 IFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156 (689)
Q Consensus 77 ~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 156 (689)
+++.+. .+|...-...+.++.+.+.... ...+.++.. .+|...-...+.++...++.+....+.. ++. .++
T Consensus 19 ~i~~L~-~~~~~vr~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~---d~~ 89 (201)
T 3ltj_A 19 YIKNLQ-DDSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK---DED 89 (201)
T ss_dssp HHHHTT-CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSS
T ss_pred HHHHhc-CCCHHHHHHHHHHHHhcCChhH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCC
Confidence 333344 4555544455555555554332 233333332 2344444444555555554433322222 221 455
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCC
Q 036237 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGK 234 (689)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~ 234 (689)
..+-...+.++.+.|+.+....+.+.+..+|...-...+.++.+.|..+..-.+...+..+|...-...+.++...|.
T Consensus 90 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 666666666666666655444455555455555555555555555544333333333333444444444555554444
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.27 E-value=3.5 Score=34.04 Aligned_cols=84 Identities=12% Similarity=-0.031 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 036237 68 INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 147 (689)
||++......+-.+. .+....+..+..+...|.-++--+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+
T Consensus 74 C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 74 CQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp CSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 777777777776664 4555667778888888888888888888644 3467777778888888888888888888888
Q ss_pred HHHhCCC
Q 036237 148 VFKLGFG 154 (689)
Q Consensus 148 ~~~~g~~ 154 (689)
+-+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 8887753
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.02 E-value=3.6 Score=34.74 Aligned_cols=99 Identities=10% Similarity=0.131 Sum_probs=70.3
Q ss_pred CCChhhHHHHHHHHHhCCCc------hHHHHHHHHhHhCCCCCCcc----cHHHHHHHH---HhcCChHHHHHHHHHHHH
Q 036237 84 HPSLVLYNLLIKCYVFNQRS------HEALTLFCDLLDRFLLPDNF----TLPCVIKGA---ARLGAIKEGKQIHGLVFK 150 (689)
Q Consensus 84 ~~~~~~~~~ll~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~----t~~~ll~~~---~~~~~~~~a~~~~~~~~~ 150 (689)
+.|..+|-..+.-.-+.|++ +..+++|++.... ++|+.. .|..+.--| ...++++.|+++|..+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56777888888888888999 8888999988763 566542 122222111 234788999999999887
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 036237 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184 (689)
Q Consensus 151 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 184 (689)
.+-.- ..+|-.....-.+.|+++.|++++....
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 63222 6677777777788899999998887543
No 244
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.08 E-value=7.9 Score=29.88 Aligned_cols=59 Identities=22% Similarity=0.185 Sum_probs=45.8
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHH
Q 036237 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320 (689)
Q Consensus 259 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 320 (689)
.+...|++++|..+.+.+..||.+.|-+|-.. +.|..+++..-+.++..+| .|....|.
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 46678999999999999999999999887654 5788888888887887766 45444443
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.07 E-value=6.5 Score=30.31 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=58.5
Q ss_pred chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 331 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34556666666555543 22222222344667899999999999998899999988765 466888888888878877
Q ss_pred CCCCCCHHHHHH
Q 036237 411 MGMKPTAITFIG 422 (689)
Q Consensus 411 ~g~~p~~~t~~~ 422 (689)
.| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 66 555555543
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.56 E-value=6.1 Score=30.41 Aligned_cols=86 Identities=13% Similarity=0.159 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036237 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411 (689)
Q Consensus 332 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 411 (689)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.++...
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4556666666555543 22222222344667899999999999999999999988755 4678888888888888877
Q ss_pred CCCCCHHHHHH
Q 036237 412 GMKPTAITFIG 422 (689)
Q Consensus 412 g~~p~~~t~~~ 422 (689)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 565555543
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.77 E-value=1.6 Score=44.30 Aligned_cols=68 Identities=12% Similarity=0.038 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH-----hCCCccCCc
Q 036237 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK-----KRGFRKDPG 555 (689)
Q Consensus 488 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 555 (689)
...++.++...|+.+++...++.++..+|-+-..+..|+.+|.+.|+..+|.+.|+... +-|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34456677788899999998999999999888889999999999999999998888764 357777653
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.86 E-value=29 Score=33.50 Aligned_cols=180 Identities=13% Similarity=0.087 Sum_probs=98.7
Q ss_pred HHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHH----H
Q 036237 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL----L 304 (689)
Q Consensus 229 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~ 304 (689)
....|++=+|.+. |.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .
T Consensus 23 ~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 23 KIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHH
Confidence 3444555555554 345666777777777777765431 2234445555444433 3
Q ss_pred HHhccCCCCcChhhHHHHHHHHHcccch-----hhHHHHHHHHHHhC--CccchhHHhHHHhhHHhcCCHHHHHHHHHhc
Q 036237 305 ETMLIGDVLPNDATLVSALSAVAGLAVL-----NKGRWMHSYIVKNG--FVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377 (689)
Q Consensus 305 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~-----~~a~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 377 (689)
+-..+.+++++......++..+.....- +-......+..+.| ...|+.....+...|.+.|++.+|+..|-.-
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 3334456667766666666555443211 11222333333333 2347788889999999999999999887633
Q ss_pred CCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 036237 378 SKKKVGHWTAMIVGLGMH---GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 378 ~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 445 (689)
...+...+..|+.-+... |...++--.+- .+++ -|.-.|++..|..+|+...+
T Consensus 161 ~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 161 THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------RLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--------------HHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCCCCcchHHHHHH--------------HHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 222444554444433333 43333211111 1122 23456788888888887654
No 249
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.59 E-value=7.4 Score=29.96 Aligned_cols=59 Identities=14% Similarity=0.009 Sum_probs=45.4
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHH
Q 036237 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320 (689)
Q Consensus 259 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 320 (689)
.+...|++++|..+.+.+..||.+.|-+|-. .+.|..+++..-+.++..+| .|....|.
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4667899999999999999999999988765 36788888888887777665 44444443
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.22 E-value=31 Score=34.64 Aligned_cols=57 Identities=9% Similarity=0.033 Sum_probs=30.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
++..|...|++.+|.+++..+.++..-..+ .++|..-+.+|...|++.++...+.+.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 445556666666666666655543222111 244555555666666666666555443
No 251
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=84.13 E-value=4.8 Score=34.01 Aligned_cols=51 Identities=10% Similarity=-0.003 Sum_probs=28.1
Q ss_pred CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 499 g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
+|.+.|..+|+.++.+...-+..+...+.--.+.|+.+.|++++.+....+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 556666666666655433223334444444455666666666666665544
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.90 E-value=9.7 Score=44.76 Aligned_cols=188 Identities=7% Similarity=0.042 Sum_probs=102.2
Q ss_pred HHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---------------------
Q 036237 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP--------------------- 415 (689)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--------------------- 415 (689)
++..+.+.|..+-|.++..-.. .+...--.+..+|...|++++|.+.|++... |+.+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccccc
Confidence 4444555555555555443332 3333334455556666666666666655321 1110
Q ss_pred --CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHH
Q 036237 416 --TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT---IEHYGCLVDILCRTGYLEEAKSTIESMPMR-PNFVIWM 489 (689)
Q Consensus 416 --~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~ 489 (689)
-..-|..++..+.+.+.++.+.++-...+...+-.++ ...|..+.+.+...|++++|...+-.++.. --.....
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr 975 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLL 975 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHH
Confidence 1123566667777777777777777666643221111 125777788888888888888888766422 2344566
Q ss_pred HHHHHHHhcCChHH------------HHHHHHH-Hhhc-CCCC-chhHHHHHHHHHhcCCcchHHHH-HHHHH
Q 036237 490 SLLSGARNHGNKDI------------GEYAANN-LIKV-APDT-IGCYVVLSNIYAAAGQWDKVSEV-REMMK 546 (689)
Q Consensus 490 ~ll~~~~~~g~~~~------------a~~~~~~-~~~~-~p~~-~~~~~~L~~~~~~~g~~~~A~~~-~~~m~ 546 (689)
.|+..++..|..+. ...++.. +... +|.+ +..|..|-.-+...|++..|..+ ++...
T Consensus 976 ~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 67776666655433 2233221 2222 3333 33444444445678888877655 55554
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.64 E-value=5.2 Score=31.00 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 397 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
+.-+..+-++.+....+-|++....+.|.||.+.+++.-|.++|+.++.+. .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 345666677777777889999999999999999999999999999998643 344566777765
No 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.47 E-value=65 Score=36.37 Aligned_cols=254 Identities=11% Similarity=0.070 Sum_probs=129.8
Q ss_pred HHHhCCChHHHHHHHhhcCcC----C--cchHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----------hHHHHHHHHH
Q 036237 228 GFSKCGKVEIAREIFYRMPNR----N--LVSWNAMINGYMKAGDVDSACELFDDMEI-RD----------LITWNSMIAG 290 (689)
Q Consensus 228 ~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~~ 290 (689)
+....|+.++++.++...... + +.....+.-+...+|.-+++..++..... .+ +..-.++.-|
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 456678888888888776641 1 22333444455566665566665554331 12 1122333334
Q ss_pred HHHcCC-hHHHHHHHHHhccCCCCcChhh--HH--HHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhH--Hh
Q 036237 291 YELNGR-FMEALELLETMLIGDVLPNDAT--LV--SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY--SK 363 (689)
Q Consensus 291 ~~~~g~-~~~A~~~~~~m~~~g~~p~~~t--~~--~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~--~~ 363 (689)
++-.|. -+++.+.+..++... +... .. ++...+...|+-+....++..+.+.. +..+...++.++ .-
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 443443 245666666665432 2111 11 11222345566666666766665432 222333333333 35
Q ss_pred cCCHHHHHHHHHhcCC-CChh-hHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 036237 364 CGSIESALTVFRAISK-KKVG-HWT---AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438 (689)
Q Consensus 364 ~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 438 (689)
.|+.+.+..+.+.+.. .+.. -|. ++..+|+-.|+.....+++..+.... ..+......+.-++...|+.+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 537 YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 5666666666666543 3332 233 34456777788766666888877631 2222222222234444555555666
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHHHHHH
Q 036237 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYL-EEAKSTIESMPMRPNFVIWMS 490 (689)
Q Consensus 439 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~ 490 (689)
+++.+.. ...|.+..-.++.-+....|.. .+|.+.+..+...+|..+-..
T Consensus 616 lv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~ 666 (963)
T 4ady_A 616 IVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQA 666 (963)
T ss_dssp HTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHH
Confidence 6665553 2345555555555555555553 567777777754555554433
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.89 E-value=9.3 Score=32.86 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 520 GCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 520 ~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
+.-+.++.+|.+.|++++|..+++.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 3444555556666666666655554
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.60 E-value=6.6 Score=33.77 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Q 036237 457 GCLVDILCRTGYLEEAKSTIESMP 480 (689)
Q Consensus 457 ~~li~~~~~~g~~~~A~~~~~~~~ 480 (689)
--+...|.+.|++++|+.+++.+|
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 335555666666666666666654
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.31 E-value=14 Score=30.43 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
...+--|.-|+.+.|+++.|.+..+.+++.+|+|.
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 34556677788899999999999999999999885
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.00 E-value=49 Score=33.93 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCC--CC--hh
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRM--GMKPT---AITFIGVLNACSHAGLVNDGRRYFNMMINDY-GIE--PT--IE 454 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~--p~--~~ 454 (689)
...|...|...|++.+|.+++.++... |..+. ...+...+..|...+++.+|..++.++.... ... |+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456788889999999999999998643 22222 2256667788999999999999998875321 222 22 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
.|.+++..+...+++.+|...|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6788899999999999998887765
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.81 E-value=40 Score=32.82 Aligned_cols=166 Identities=14% Similarity=0.056 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHH----HHhccCCCCcChhhHHHHHHHHHcc
Q 036237 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL----ETMLIGDVLPNDATLVSALSAVAGL 329 (689)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~ 329 (689)
.++..-|.+.+++++|.+++..- ...+.+.|+...|-++- +-..+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 44556677777777777765331 12234445544433332 3333445666666555555555443
Q ss_pred cchh-----hHHHHHHHHHHhC--CccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 036237 330 AVLN-----KGRWMHSYIVKNG--FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402 (689)
Q Consensus 330 ~~~~-----~a~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 402 (689)
..-+ -..+...+-.+.| ..-|+.....+...|.+.+++.+|+.-|-.-..+.+..+..|+.-+...+...+
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e-- 185 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT-- 185 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG--
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc--
Confidence 3211 1122223333444 345778888899999999999999998843222223455444433333322111
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 036237 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 403 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 445 (689)
+|...-.+++ -|.-.+++..|..+++...+
T Consensus 186 ------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 ------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1111222222 34456788888887766553
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.56 E-value=22 Score=29.66 Aligned_cols=69 Identities=10% Similarity=0.015 Sum_probs=42.4
Q ss_pred CChhHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 451 PTIEHYGCLVDILCRTGYLE---EAKSTIESM-PMRP--NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 451 p~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
|+..+--.+..++.+..+.+ ++..++++. ...| .....--|.-++.+.|+++.|.+..+.+++.+|+|.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 44444444444444444322 333344333 1122 223445567789999999999999999999999885
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.96 E-value=53 Score=33.66 Aligned_cols=92 Identities=7% Similarity=-0.023 Sum_probs=59.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhc-CCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCH----HHH
Q 036237 422 GVLNACSHAGLVNDGRRYFNMMINDY-GIEPT---IEHYGCLVDILCRTGYLEEAKSTIESMP-----MRPNF----VIW 488 (689)
Q Consensus 422 ~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~----~~~ 488 (689)
.|...+...|++.+|..++..+..+. +..+. +..+..-+.+|...+++..|..++.++. ..+++ ..+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 45566777888888888888776442 22222 4567777788888888888888877651 12221 233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 489 MSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 489 ~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
...+..+...+++.+|-+.|..+++
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4445555666777777777766654
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=80.44 E-value=82 Score=35.54 Aligned_cols=250 Identities=11% Similarity=0.036 Sum_probs=132.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCC----CC--hHHHHHHHHHHHHcCChHHHHHHHHHhccCCC--Cc---Ch-hh-HHHHHH
Q 036237 258 NGYMKAGDVDSACELFDDMEI----RD--LITWNSMIAGYELNGRFMEALELLETMLIGDV--LP---ND-AT-LVSALS 324 (689)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~-~t-~~~ll~ 324 (689)
-+....|+.+++..+++.-.. .+ +..-..+.-|....|..++++.++...+...- .- +. .. -..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345677888999999888664 22 22334445566777777788888777664211 00 01 11 111222
Q ss_pred HHHcccch-hhHHHHHHHHHHhCCc-cchhHHhHHHhhHHhcCCHHHHHHHHHhcCC-CC--hhhHHHHHHHHHHcCCHH
Q 036237 325 AVAGLAVL-NKGRWMHSYIVKNGFV-VDGVLGTLLIQMYSKCGSIESALTVFRAISK-KK--VGHWTAMIVGLGMHGMAT 399 (689)
Q Consensus 325 a~~~~~~~-~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~ 399 (689)
+.+..|.- +++...+..++...-. ......-+|.-.|...|+-+....++..+.+ .+ +.-.-++.-|+...|+.+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 22223322 3444444444432211 0012223444556677887777777776543 22 222333444555789999
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHH---HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 036237 400 QALDLFNKMCRMGMKPTAI-TFI---GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475 (689)
Q Consensus 400 ~A~~l~~~m~~~g~~p~~~-t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 475 (689)
.+..+.+.+... +|.. -|. ++.-+|+..|+.....+++..+..+ ...++.-...+.-++.-.|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 999888888863 3333 333 3345778889988777788888753 223333333333344446666666666
Q ss_pred HHhCCCCCCHHHHH--HHHHHHHhcCCh-HHHHHHHHHHh
Q 036237 476 IESMPMRPNFVIWM--SLLSGARNHGNK-DIGEYAANNLI 512 (689)
Q Consensus 476 ~~~~~~~p~~~~~~--~ll~~~~~~g~~-~~a~~~~~~~~ 512 (689)
++.+....|+.+-. .+.-+....|+. ..+...+..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 66543223433332 222333333332 45555665554
No 263
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=79.42 E-value=18 Score=39.92 Aligned_cols=52 Identities=12% Similarity=-0.068 Sum_probs=25.9
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 036237 132 AARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184 (689)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 184 (689)
|...|+++.|.++-.+.+... +.+-.+|-.|...|.+.|+++.|+-.+..+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 334455555555555555443 3334455555555555555555555555554
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.34 E-value=49 Score=32.24 Aligned_cols=167 Identities=14% Similarity=0.131 Sum_probs=99.4
Q ss_pred HhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHhc
Q 036237 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF----NKMCRMGMKPTAITFIGVLNACSH 429 (689)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~~ 429 (689)
+.++..=|.+.+++++|.+++..- ...+.++|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 344555578888888888875432 33456667766655544 445556788888777777766655
Q ss_pred cCcHH-HHHHHHHHhH---HhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 036237 430 AGLVN-DGRRYFNMMI---NDYG--IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503 (689)
Q Consensus 430 ~g~~~-~a~~~~~~~~---~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 503 (689)
...-+ .=..+.+.++ .+.| -.-++.....+...|.+.|++.+|+.-|- ....+.+..+..++..+...+.
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~--- 182 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE--- 182 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC---
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC---
Confidence 43211 1122222222 1223 22346777889999999999999998884 2333444677666665555443
Q ss_pred HHHHHHHHhhcCCCCchhHH-HHHHHHHhcCCcchHHHHHHHHHh
Q 036237 504 GEYAANNLIKVAPDTIGCYV-VLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~~~~~-~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|.....|. ..+--|.-.|+...|..+++...+
T Consensus 183 ------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 ------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222222 233346677888888888777654
No 265
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=78.96 E-value=11 Score=37.90 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhH
Q 036237 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN----DYGIEPTIEH 455 (689)
Q Consensus 386 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 455 (689)
..++..+...|++.+|+..+..+.... +-+...+..++.++...|+..+|++.|+...+ +.|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345666777788888887777776631 23555777788888888888888887776543 4577777654
No 266
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.59 E-value=10 Score=29.46 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=40.1
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036237 104 HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS 165 (689)
Q Consensus 104 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 165 (689)
-+..+-++.+....+.|++....+.|++|.+.+++..|.++++-++..- .+...+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3455556666666677888888888888888888888888887665442 233345555544
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.42 E-value=11 Score=31.05 Aligned_cols=62 Identities=16% Similarity=0.240 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 398 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
.-+..+-++.+....+-|++......|.||.+.+++.-|.++|+-++.+ ..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 4456666677777788999999999999999999999999999999864 4455667877765
No 268
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=75.45 E-value=54 Score=30.74 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=6.3
Q ss_pred CchhHHHHHHHHHHh
Q 036237 155 FDKFVLSSLVSMYAK 169 (689)
Q Consensus 155 ~~~~~~~~li~~~~~ 169 (689)
++..+-...+.++.+
T Consensus 103 ~~~~vr~~a~~aL~~ 117 (280)
T 1oyz_A 103 KSACVRATAIESTAQ 117 (280)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 344444444444443
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.12 E-value=25 Score=41.34 Aligned_cols=65 Identities=9% Similarity=-0.060 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCch----hHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVA-PDTIG----CYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~----~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
-|.-++..+.++|.++.+.+..+.+++.. +++.. .+..+-..+...|++++|...+-.+.+...+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 35556666777777888887777777643 33321 4556667777778888887777666654443
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.52 E-value=37 Score=31.78 Aligned_cols=22 Identities=5% Similarity=-0.097 Sum_probs=12.7
Q ss_pred cCChHHHHHHHHHHhhcCCCCc
Q 036237 498 HGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 498 ~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
.|+.+.|..+-..+++.-|..+
T Consensus 113 ~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 113 SQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HTCHHHHHHHHHHHHHHCCCCC
T ss_pred cCCHHHHHHHHHHHHhcCcccC
Confidence 3666666666666666555443
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.00 E-value=23 Score=29.13 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=45.5
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036237 105 EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS 165 (689)
Q Consensus 105 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 165 (689)
+..+-++.+....+.|++......|++|.+.+|+..|.++++-++..- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455556666677788999999999999999999999999998876543 344556666654
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=65.60 E-value=99 Score=29.76 Aligned_cols=168 Identities=11% Similarity=0.036 Sum_probs=98.8
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 036237 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL----FNKMCRMGMKPTAITFIGVLNACS 428 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~ 428 (689)
.+.++..=|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3344555677888888888875432 3345667777666554 444556678888877777776655
Q ss_pred ccCcHH-HHHHHHHHhHH---hcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 036237 429 HAGLVN-DGRRYFNMMIN---DYG--IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH---G 499 (689)
Q Consensus 429 ~~g~~~-~a~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~---g 499 (689)
.-..-+ .=.++.+.+++ +.| -.-++.....+...|.+.|++.+|..-|-.-. .-|...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCC
Confidence 422111 11222222221 112 12356778889999999999999998776321 11455666665555544 4
Q ss_pred ChHHHHHHHHHHhhcCCCCchhHH-HHHHHHHhcCCcchHHHHHHHHHh
Q 036237 500 NKDIGEYAANNLIKVAPDTIGCYV-VLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 500 ~~~~a~~~~~~~~~~~p~~~~~~~-~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
...++ ..|. ..+--|.-.|+...|..+++...+
T Consensus 183 ~~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33332 2221 222335567888899988887653
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.51 E-value=11 Score=35.34 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=42.6
Q ss_pred HHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 461 DILCRTGYLEEAKSTIES-MPMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
..+.+.|.+++|++.... ++..| |...-..|+.-+|..|+++.|.+-++.+.+++|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345678888888776654 33344 56666777788888888888888888888888854
No 274
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=63.73 E-value=51 Score=35.66 Aligned_cols=81 Identities=12% Similarity=0.086 Sum_probs=40.4
Q ss_pred HHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHh---
Q 036237 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK--- 363 (689)
Q Consensus 287 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~--- 363 (689)
....+.-.|+++.|++++.+. ...+.+.+...+..+.-++- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 445566789999999887755 24566666655554433321 11111110 00 11 2224456666654
Q ss_pred cCCHHHHHHHHHhcC
Q 036237 364 CGSIESALTVFRAIS 378 (689)
Q Consensus 364 ~g~~~~A~~~~~~~~ 378 (689)
..+..+|.+.|--+.
T Consensus 369 ~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 369 YSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTCHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHh
Confidence 467777777666553
No 275
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=60.43 E-value=71 Score=30.07 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=9.4
Q ss_pred HHHHHhccCCCCcChhh
Q 036237 302 ELLETMLIGDVLPNDAT 318 (689)
Q Consensus 302 ~~~~~m~~~g~~p~~~t 318 (689)
++.+.+++.|..|+...
T Consensus 209 ~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 209 EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 34455556666666544
No 276
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.47 E-value=63 Score=26.36 Aligned_cols=64 Identities=19% Similarity=0.444 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCC--hHHHHHHHHHhccCCCCcCh
Q 036237 253 WNAMINGYMKAGDVDSACELFDDMEIR---DLITWNSMIAGYELNGR--FMEALELLETMLIGDVLPND 316 (689)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 316 (689)
...++.-|...|+.++|.+.++++..| ..+....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 356778888889999999999988765 23444555555555442 35677888888776654443
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.87 E-value=1.3e+02 Score=27.78 Aligned_cols=52 Identities=6% Similarity=-0.070 Sum_probs=25.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchh---HHHHHHHHHHhcCChHHHHHHHhhC
Q 036237 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKF---VLSSLVSMYAKFGEIDLGRRVFDAM 183 (689)
Q Consensus 128 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m 183 (689)
.+...++.|+++..+ .+++.|..++.. ...+.+...+..|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQ----QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHH----HHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 344445566654433 334445433321 1223445555666666666666543
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.24 E-value=31 Score=35.23 Aligned_cols=61 Identities=7% Similarity=-0.060 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT--AITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
++..+...|.+.|++++|.+.|.++...-..+. ...+..++..+...+++..+....+++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344455555555555555555555554322222 1234445555555566666655555554
No 279
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=53.03 E-value=1.9e+02 Score=28.98 Aligned_cols=13 Identities=15% Similarity=0.524 Sum_probs=7.1
Q ss_pred CCCHHHHHHHHhc
Q 036237 68 INNLHYARSIFDR 80 (689)
Q Consensus 68 ~g~~~~A~~~f~~ 80 (689)
.|+++-+..+++.
T Consensus 24 ~g~~~~v~~Ll~~ 36 (437)
T 1n11_A 24 MGHLPIVKNLLQR 36 (437)
T ss_dssp HTCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHc
Confidence 4555555555554
No 280
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=50.83 E-value=2.6e+02 Score=29.92 Aligned_cols=241 Identities=11% Similarity=-0.030 Sum_probs=132.0
Q ss_pred CChHHHHHHHHHhccCCCCcChhhHHHHHHHH----HcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHH
Q 036237 295 GRFMEALELLETMLIGDVLPNDATLVSALSAV----AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370 (689)
Q Consensus 295 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 370 (689)
.+.+.|...+....... ..+......+-... ...+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37789999998876432 22333333232222 23332445555555544333 3333344455556678999999
Q ss_pred HHHHHhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 036237 371 LTVFRAISKKK---VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447 (689)
Q Consensus 371 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 447 (689)
...|+.|.... .....=+..++.+.|+.++|..+|+++.. +. +|-.++.+ .+.|..-. .. ..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lAa-~~Lg~~~~-------~~-~~ 369 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVAA-QRIGEEYE-------LK-ID 369 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHHH-HHTTCCCC-------CC-CC
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHHH-HHcCCCCC-------CC-CC
Confidence 99999998632 22233355677889999999999999874 22 44444422 22221000 00 00
Q ss_pred CCCCC-hh-----HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC---CC
Q 036237 448 GIEPT-IE-----HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP---DT 518 (689)
Q Consensus 448 ~~~p~-~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~ 518 (689)
...+. .. .-..-+..+...|...+|...+.......+......+.......|..+.++....+....+. .-
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~ 449 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERF 449 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHS
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhC
Confidence 01111 00 11223456778999999988877653234444444555555677888888776654432210 11
Q ss_pred chhHHHHHHHHHhcCCcchHHHHHHHHHhCCCccC
Q 036237 519 IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553 (689)
Q Consensus 519 ~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 553 (689)
|..|..++.-+++.-.++...-.--...+.+..|.
T Consensus 450 P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 450 PLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp CCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred CcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 23466666666666666655433223345566554
No 281
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=49.77 E-value=1.8e+02 Score=27.91 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=41.9
Q ss_pred hCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 478 SMPMRPN--FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 478 ~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
..+++|. ..+..+-++.+.+++|+..|..+.++++++.|... ..++|.+++..-.+.+
T Consensus 198 ~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 198 KAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 3355553 33667778889999999999999999999998532 2256777777666543
No 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.20 E-value=61 Score=30.58 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=7.1
Q ss_pred CCCHHHHHHHHhc
Q 036237 68 INNLHYARSIFDR 80 (689)
Q Consensus 68 ~g~~~~A~~~f~~ 80 (689)
.|+.+-+..+++.
T Consensus 41 ~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 41 DNNVRLVCTLLNA 53 (285)
T ss_dssp TTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHhC
Confidence 4555555555544
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=48.38 E-value=1.5e+02 Score=26.37 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCCcccEEEECCE
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 564 (689)
.|...+..| ..++...+..+|..+.. +.-..+..|...+..+...|++++|.++++.=.+++-+|.
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~----------- 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY----------- 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH-----------
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH-----------
Confidence 444444433 23446678888888776 5566777899999999999999999999987776665432
Q ss_pred EEEEeeCCCCCcChHHHHHHHHHHHHHHHHCCC
Q 036237 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597 (689)
Q Consensus 565 ~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 597 (689)
+.......+...+|.+.++
T Consensus 150 --------------~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 150 --------------NRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp --------------HHHHHHHHHHHHHHHHTTC
T ss_pred --------------HHHHHHHHHHHHHHHhcCC
Confidence 3444555677788888776
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.11 E-value=2.1e+02 Score=28.09 Aligned_cols=70 Identities=17% Similarity=0.375 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCC--hHHHHHHHHHhccCCCCcChhhHHHH
Q 036237 253 WNAMINGYMKAGDVDSACELFDDMEIRD---LITWNSMIAGYELNGR--FMEALELLETMLIGDVLPNDATLVSA 322 (689)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~l 322 (689)
.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+.......+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4678888999999999999999998763 3445555556555433 35577888888877765554443333
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.69 E-value=1.7e+02 Score=26.85 Aligned_cols=83 Identities=16% Similarity=0.008 Sum_probs=43.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCCcc---cHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh--HHHHHHHH
Q 036237 92 LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNF---TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF--VLSSLVSM 166 (689)
Q Consensus 92 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~ 166 (689)
+.+...++.|+.+ +++.+.+.|..++.. .-.+.+...+..|+.+ +.+.+++.|..++.. ...+.+..
T Consensus 7 ~~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHH----HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 4455556777765 445555666655433 1123444445566654 455556667655432 11233444
Q ss_pred HHhcCChHHHHHHHhh
Q 036237 167 YAKFGEIDLGRRVFDA 182 (689)
Q Consensus 167 ~~~~g~~~~A~~~~~~ 182 (689)
.+..|+.+-+..+++.
T Consensus 79 A~~~~~~~~v~~Ll~~ 94 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSK 94 (285)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc
Confidence 4566676666666654
No 286
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.55 E-value=64 Score=27.26 Aligned_cols=64 Identities=19% Similarity=0.444 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCC--hHHHHHHHHHhccCCCCcCh
Q 036237 253 WNAMINGYMKAGDVDSACELFDDMEIR---DLITWNSMIAGYELNGR--FMEALELLETMLIGDVLPND 316 (689)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 316 (689)
.+.++.-|...|+.++|.+.++++..| ..+....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 456788888888999999999888765 23344555555555333 34577788888766654443
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.40 E-value=1.6e+02 Score=30.50 Aligned_cols=179 Identities=11% Similarity=0.090 Sum_probs=92.1
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCCCCh-hh------H-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKV-GH------W-TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI---- 418 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~------~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---- 418 (689)
..++|.++..|...+.++.|..+..+..-|.. .+ | .-+...+.-.+++.+|.+.|......- +++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CcchhhhhH
Confidence 45667788888888888888888888765432 11 2 224556777889999999888877532 22221
Q ss_pred ---H--HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036237 419 ---T--FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493 (689)
Q Consensus 419 ---t--~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 493 (689)
. |..++..+ .|++.+ ..+|. .+++......|..|+.++ +.|++++-...+++-. .
T Consensus 310 r~~a~K~lI~V~LL--lG~iP~-r~lf~----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~ 369 (523)
T 4b4t_S 310 LQQSNKLHCCIQLL--MGDIPE-LSFFH----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------Q 369 (523)
T ss_dssp HHHHHHHHHHHHHH--HTCCCC-HHHHT----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------H
T ss_pred HHHHHHHHHhHHhh--cCCCCC-hHHhh----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------c
Confidence 1 11111111 233221 11111 111111233466777776 6688777666665432 1
Q ss_pred HHHhcCChHHHHHHHHHH----hh-cCCC-CchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 494 GARNHGNKDIGEYAANNL----IK-VAPD-TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~----~~-~~p~-~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
.+.+.|.+....++-... +. +... .......++..+ .....++|+.+...|...|.-
T Consensus 370 ~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL-~L~s~eeaE~iVAkmI~dG~I 432 (523)
T 4b4t_S 370 LLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKL-NLDSEQTVEYMVSRAIRDGVI 432 (523)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHH-HHHHSSCHHHHHHHHHHHTSS
T ss_pred eeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHh-CCCCHHHHHHHHHHHHHcCCc
Confidence 234455555544433322 22 2211 111122222211 112346799999999877753
No 288
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=45.98 E-value=3.1e+02 Score=29.50 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHh
Q 036237 89 LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134 (689)
Q Consensus 89 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 134 (689)
.| ++|--+.+.|++++|.++.++.... +.--...|...+..++.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 44 5677778889999999888766432 11112456667777663
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.74 E-value=1.7e+02 Score=26.06 Aligned_cols=83 Identities=10% Similarity=-0.072 Sum_probs=36.2
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCCccc--HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCC
Q 036237 97 YVFNQRSHEALTLFCDLLDRFLLPDNFT--LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV--LSSLVSMYAKFGE 172 (689)
Q Consensus 97 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~ 172 (689)
.+..|+.+....+++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++... ..+.+...+..|+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 3445666655555555555554443221 111222333444443 3344444554433211 1123333445566
Q ss_pred hHHHHHHHhhC
Q 036237 173 IDLGRRVFDAM 183 (689)
Q Consensus 173 ~~~A~~~~~~m 183 (689)
.+-+..+++..
T Consensus 92 ~~~~~~Ll~~~ 102 (241)
T 1k1a_A 92 PTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 65555555544
No 290
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=44.66 E-value=1.9e+02 Score=26.70 Aligned_cols=144 Identities=6% Similarity=-0.123 Sum_probs=61.0
Q ss_pred CchHHHHHhhcccccCCCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchH----HHHHHHHhHhCCCCCCcccHHH
Q 036237 52 HSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHE----ALTLFCDLLDRFLLPDNFTLPC 127 (689)
Q Consensus 52 ~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~t~~~ 127 (689)
+..+-...+..+++ .|..+....+...+. .++...-...+.++.+.|.... .+.++..+... .++...-..
T Consensus 36 ~~~vr~~A~~~L~~--~~~~~~~~~L~~~l~-d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr~~ 110 (280)
T 1oyz_A 36 NSLKRISSARVLQL--RGGQDAVRLAIEFCS-DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVRAT 110 (280)
T ss_dssp SHHHHHHHHHHHHH--HCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHHHH
T ss_pred CHHHHHHHHHHHHc--cCCchHHHHHHHHHc-CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHHHH
Confidence 33333334444444 443333333333333 5555544555566666553322 22333322111 245444455
Q ss_pred HHHHHHhcCC--hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHh
Q 036237 128 VIKGAARLGA--IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200 (689)
Q Consensus 128 ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 200 (689)
.+.++...+. ......+...+.+.=-.++..+-...+.+..+.|+.+....+.+.+..++...-...+.++.+
T Consensus 111 a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 185 (280)
T 1oyz_A 111 AIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAINI 185 (280)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 5555554431 111122333333322256777777777777777664333333333344444433333444433
No 291
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.51 E-value=64 Score=32.86 Aligned_cols=95 Identities=7% Similarity=-0.066 Sum_probs=61.4
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHHhcCC------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHH--H
Q 036237 353 LGTLLIQMYSKCGSIESALTVFRAISK------KKVGHWTAMIVGLGMHGMATQALDLFNKMCR---MGMKPTAITF--I 421 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~--~ 421 (689)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-.+|..+...+++..+...+.+... .+-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455677788888888888888877764 1234666778888888888888888887654 2323332211 1
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhc
Q 036237 422 GVLNACSHAGLVNDGRRYFNMMINDY 447 (689)
Q Consensus 422 ~ll~a~~~~g~~~~a~~~~~~~~~~~ 447 (689)
.-...+...+++..|-+.|-.....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11123446788888888887766543
No 292
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=41.37 E-value=8.6 Score=23.75 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=12.9
Q ss_pred cCCccccc-cCccCCCCCC
Q 036237 671 DNSRFHHF-KNGSCSCKDF 688 (689)
Q Consensus 671 ~~~~~h~~-~~g~csc~~~ 688 (689)
.|-.-|.. .+|.||||-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 35555665 5899999976
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.09 E-value=1.3e+02 Score=24.42 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=41.9
Q ss_pred HhHHHhhHHhcCCHHHHHHHHHhcCCCCh---hhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCC
Q 036237 354 GTLLIQMYSKCGSIESALTVFRAISKKKV---GHWTAMIVGLGMHGM--ATQALDLFNKMCRMGMKP 415 (689)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 415 (689)
...++.-|...|+.++|.+.++++..|.. ....++..++-+.+. .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34577888889999999999999876632 234445555555432 356777888887766443
No 294
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=37.62 E-value=3.2e+02 Score=27.20 Aligned_cols=286 Identities=10% Similarity=0.057 Sum_probs=133.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhcCc--------CCcchHHHHHHHHHhcCC-HHHHHHHHHhcCC---CChHHH----
Q 036237 221 SWTCLVDGFSKCGKVEIAREIFYRMPN--------RNLVSWNAMINGYMKAGD-VDSACELFDDMEI---RDLITW---- 284 (689)
Q Consensus 221 ~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~---- 284 (689)
....+...|.+.|+.++..+++..... ........|++.+....+ .+.-.++..+..+ .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777778887777777766543 113445566666665432 2222333322221 111222
Q ss_pred --HHHHHHHHHcCChHHHHHHHHHhccCCCCcChhh-----HHHHHHHHHcccchhhHHHHHHHHHHh--CCccchhHHh
Q 036237 285 --NSMIAGYELNGRFMEALELLETMLIGDVLPNDAT-----LVSALSAVAGLAVLNKGRWMHSYIVKN--GFVVDGVLGT 355 (689)
Q Consensus 285 --~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-----~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~ 355 (689)
.-++..|...|++.+|++++.++.+.=-..|..+ +..-+..|...+++.+++..+...... .+.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 1456677777777777777777665311222221 222223334444444444444433221 1111111111
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHH----CCCCCC---HHHHHHHHHHH
Q 036237 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG-MHGMATQALDLFNKMCR----MGMKPT---AITFIGVLNAC 427 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~----~g~~p~---~~t~~~ll~a~ 427 (689)
. ++ -.-...+. ..+++.+|...|-+... .| .|. ...|..+ .+.
T Consensus 181 ~-i~--------------------------~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL-~aL 231 (394)
T 3txn_A 181 A-LD--------------------------LQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLL-CKI 231 (394)
T ss_dssp H-HH--------------------------HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHH-HHH
T ss_pred H-HH--------------------------HHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHH-HHH
Confidence 1 11 11112234 45666666665555431 11 121 1233322 222
Q ss_pred hccCcHHHHHHHH-HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHH---HHHHHHHHHhcCCh
Q 036237 428 SHAGLVNDGRRYF-NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVI---WMSLLSGARNHGNK 501 (689)
Q Consensus 428 ~~~g~~~~a~~~~-~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~---~~~ll~~~~~~g~~ 501 (689)
..... .+-..++ ......+ ..|....+..|+.+| +.+++.+...+++... +..|... +..|......
T Consensus 232 l~~~r-~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~---- 304 (394)
T 3txn_A 232 MLGQS-DDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLE---- 304 (394)
T ss_dssp HTTCG-GGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHH----
T ss_pred HcCCH-HHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH----
Confidence 22221 1111211 1111122 345555566666654 5567877777777653 3345542 1112111111
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 036237 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 502 ~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~ 550 (689)
..+.++ ..|-....+..++..+.- ..++++..+.+|...|.
T Consensus 305 ----~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 305 ----QNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp ----HHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred ----HHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 111111 456666677777777653 67899999999987664
No 295
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=36.66 E-value=10 Score=26.77 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=18.3
Q ss_pred ceEEEecCCccccccCccCCCC
Q 036237 665 REIIVRDNSRFHHFKNGSCSCK 686 (689)
Q Consensus 665 ~~~~~~~~~~~h~~~~g~csc~ 686 (689)
..|-+.|.+..|+||||+-+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4677899999999999997644
No 296
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=36.40 E-value=1.9e+02 Score=24.28 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=36.7
Q ss_pred HHHHHHHHhh--cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 504 GEYAANNLIK--VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 504 a~~~~~~~~~--~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
+..+|..+.. +.-..+..|...+..+...|++++|.++++.=.+++-+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 6677777765 55556678888888899999999999998877666544
No 297
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=35.12 E-value=3.5e+02 Score=26.89 Aligned_cols=12 Identities=8% Similarity=0.216 Sum_probs=5.6
Q ss_pred CCCHHHHHHHHh
Q 036237 68 INNLHYARSIFD 79 (689)
Q Consensus 68 ~g~~~~A~~~f~ 79 (689)
.|+.+-+..+++
T Consensus 57 ~g~~~~v~~Ll~ 68 (437)
T 1n11_A 57 AGHTEVAKYLLQ 68 (437)
T ss_dssp HTCHHHHHHHHH
T ss_pred cCCHHHHHHHHh
Confidence 345444444444
No 298
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=34.94 E-value=55 Score=23.81 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=28.5
Q ss_pred HHHHhcccC-CCChhhHHHHHHHHHhCCCchHHHHHHHHh
Q 036237 75 RSIFDRILQ-HPSLVLYNLLIKCYVFNQRSHEALTLFCDL 113 (689)
Q Consensus 75 ~~~f~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 113 (689)
..+++++|. +|++.||+-+...+-+..-..+++.+.+++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 467788887 789999998887776666666666666554
No 299
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.85 E-value=2.1e+02 Score=32.55 Aligned_cols=33 Identities=6% Similarity=-0.229 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh-cCCCCc
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIK-VAPDTI 519 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~ 519 (689)
-|.-++..+-+++-++.+.++.+.+++ ..++++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 445556666677777777777777776 444443
No 300
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=34.54 E-value=2.4e+02 Score=24.93 Aligned_cols=86 Identities=10% Similarity=0.001 Sum_probs=50.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHhhCCCCCe---ehHHHHHHHHHhCCC
Q 036237 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKF--VLSSLVSMYAKFGEIDLGRRVFDAMDDKDL---VSWNCLIDGYVKKGE 203 (689)
Q Consensus 129 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~ 203 (689)
+...+..|+.+..+.+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.-..++. .-++ .+...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT-AAHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcCC
Confidence 334456788888888888777777555432 123345556677888877777765433222 1122 2333445666
Q ss_pred hHHHHHHHhhCC
Q 036237 204 VEVAMKLFDEMP 215 (689)
Q Consensus 204 ~~~A~~~~~~m~ 215 (689)
.+-...+++...
T Consensus 92 ~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 92 PTCLRALLDSAA 103 (241)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHcCC
Confidence 666666666543
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.24 E-value=2.3e+02 Score=24.19 Aligned_cols=49 Identities=10% Similarity=0.063 Sum_probs=37.8
Q ss_pred HHHHHHHHhh--cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCcc
Q 036237 504 GEYAANNLIK--VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552 (689)
Q Consensus 504 a~~~~~~~~~--~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~ 552 (689)
+..+|..+.. +.-..+..|...+..+...|++.+|.++++.=.+++-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 5566666665 556667788899999999999999999998877766543
No 302
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=32.88 E-value=2.2e+02 Score=25.10 Aligned_cols=62 Identities=15% Similarity=0.041 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCCCCHH--H-----HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 469 LEEAKSTIESMPMRPNFV--I-----WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 469 ~~~A~~~~~~~~~~p~~~--~-----~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
++.|+.+++.+...-|.. . --..+..|.+.|.+++|.+++++.+.-.|.+...-.-|..+-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~ 162 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 162 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 566777777775332311 1 1233456889999999999999988877655544444444433
No 303
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.50 E-value=3.5e+02 Score=25.81 Aligned_cols=60 Identities=5% Similarity=0.052 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc--HHHHHHHHHHhHH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL--VNDGRRYFNMMIN 445 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~ 445 (689)
.+.++.-|...|+.++|.+.++++..-...| .+....+..+.-+.+. .+....++..+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~ 230 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWK 230 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence 5567888888899999999888885211111 2234444555555432 3445566666653
No 304
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.63 E-value=2.7e+02 Score=24.44 Aligned_cols=12 Identities=8% Similarity=0.182 Sum_probs=5.7
Q ss_pred CCCHHHHHHHHh
Q 036237 68 INNLHYARSIFD 79 (689)
Q Consensus 68 ~g~~~~A~~~f~ 79 (689)
.|+++....+++
T Consensus 19 ~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 19 YGIYERCRELVE 30 (240)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCChHHHHHHHH
Confidence 345544444444
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.33 E-value=1.5e+02 Score=27.06 Aligned_cols=87 Identities=8% Similarity=-0.005 Sum_probs=43.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036237 389 IVGLGMHGMATQALDLFNKMCRM--GMKP----TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462 (689)
Q Consensus 389 i~~~~~~g~~~~A~~l~~~m~~~--g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 462 (689)
++.+..+.++++|++++++.... ++++ +.......+..-.....-.-+..+.+.+. ..++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~----~~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL----SSNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH----TCSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHH
Confidence 44555566666666666654431 1221 11111222222222222222333333332 14555666677788
Q ss_pred HHhcCCHHHHHHHHHhC
Q 036237 463 LCRTGYLEEAKSTIESM 479 (689)
Q Consensus 463 ~~~~g~~~~A~~~~~~~ 479 (689)
+.|.|+-++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 88899999998888554
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.21 E-value=1.2e+02 Score=25.55 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=40.8
Q ss_pred HhHHHhhHHhcCCHHHHHHHHHhcCCCCh---hhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCC
Q 036237 354 GTLLIQMYSKCGSIESALTVFRAISKKKV---GHWTAMIVGLGMHGM--ATQALDLFNKMCRMGMKP 415 (689)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 415 (689)
.+.++.-|...|+.++|.+.++++..|.. ....++..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 35577888888999999999999876632 234445555554322 345677777777666433
No 307
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.98 E-value=2.3e+02 Score=23.03 Aligned_cols=146 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHhhcccccCCCCHHHHHHHHhcccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHH--HHHH
Q 036237 56 SSRLLSLYVDPHINNLHYARSIFDRILQ---HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP--CVIK 130 (689)
Q Consensus 56 ~~~ll~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~ 130 (689)
....+...++ .|+.+.+..+++..+. .++..-++.+.. +..|+ .++++.+.+.|..++..... +.+.
T Consensus 2 ~~~~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~ 73 (156)
T 1bd8_A 2 AGDRLSGAAA--RGDVQEVRRLLHRELVHPDALNRFGKTALQV--MMFGS----TAIALELLKQGASPNVQDTSGTSPVH 73 (156)
T ss_dssp HHHHHHHHHH--HTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH--SCTTC----HHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cchHHHHHHH--hCCHHHHHHHHHhhCcCccccCCCCCcHHHH--HHcCC----HHHHHHHHHCCCCCCCcCCCCCCHHH
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHH--HHHHHHHhCCChHH
Q 036237 131 GAARLGAIKEGKQIHGLVFKLGFGFDKF--VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN--CLIDGYVKKGEVEV 206 (689)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~li~~~~~~g~~~~ 206 (689)
..+..|+.+ +.+.+++.|..++.. ...+.+...++.|+.+-+..+++. ...+..... +-+...++.|+.+-
T Consensus 74 ~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~ 148 (156)
T 1bd8_A 74 DAARTGFLD----TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDL 148 (156)
T ss_dssp HHHHTTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHH
T ss_pred HHHHcCcHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHH
Q ss_pred HHHHHhhC
Q 036237 207 AMKLFDEM 214 (689)
Q Consensus 207 A~~~~~~m 214 (689)
+.-+++.|
T Consensus 149 v~~Ll~~~ 156 (156)
T 1bd8_A 149 VDILQGHM 156 (156)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhhC
No 308
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.01 E-value=2.4e+02 Score=27.23 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=7.7
Q ss_pred HhcCCHHHHHHHHHh
Q 036237 464 CRTGYLEEAKSTIES 478 (689)
Q Consensus 464 ~~~g~~~~A~~~~~~ 478 (689)
++.|+.+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 344555555555554
No 309
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=27.71 E-value=4.2e+02 Score=25.47 Aligned_cols=23 Identities=9% Similarity=-0.237 Sum_probs=11.4
Q ss_pred HHhcCChHHHHHHHHHHHHhCCC
Q 036237 132 AARLGAIKEGKQIHGLVFKLGFG 154 (689)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~g~~ 154 (689)
.+..|+.+-+..+++.....|..
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHhccccCCC
Confidence 34456665555555544444433
No 310
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=27.30 E-value=46 Score=24.98 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=24.2
Q ss_pred cChHHHHHHHHHHHHHHHHCCCCCCCccc
Q 036237 576 PQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604 (689)
Q Consensus 576 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~~ 604 (689)
+...++...+++...+++..|+.||-..+
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 34567888889999999999999998765
No 311
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.08 E-value=2e+02 Score=26.27 Aligned_cols=88 Identities=14% Similarity=0.020 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhC--CCCC----CcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036237 92 LLIKCYVFNQRSHEALTLFCDLLDR--FLLP----DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS 165 (689)
Q Consensus 92 ~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 165 (689)
--+..+....++++|+++.++..+. +.++ +.......++.-.....-..+..+...+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3466778888899998888776541 2221 1122222333322222222333333333 22 344455555566
Q ss_pred HHHhcCChHHHHHHHhh
Q 036237 166 MYAKFGEIDLGRRVFDA 182 (689)
Q Consensus 166 ~~~~~g~~~~A~~~~~~ 182 (689)
.+.+.|+-+.|..+|-+
T Consensus 100 ~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHH
Confidence 66677777777776643
No 312
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.73 E-value=3.4e+02 Score=23.78 Aligned_cols=105 Identities=10% Similarity=-0.070 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHhcccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcc---cHHHHHHHHHhcCChHHH
Q 036237 68 INNLHYARSIFDRILQ---HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNF---TLPCVIKGAARLGAIKEG 141 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a 141 (689)
.|+++....+++.-+. .++..-++.|..+ +..|+.+ +++.+.+.|..++.. -.+.+. ..+..|+.+
T Consensus 16 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~-- 87 (231)
T 3aji_A 16 SGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLH-IAASAGXDE-- 87 (231)
T ss_dssp HTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHH-HHHHHTCHH--
T ss_pred hCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHH-HHHHcCHHH--
Confidence 5777777777655331 2333334443333 3444433 444445555554432 222232 233445543
Q ss_pred HHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHhh
Q 036237 142 KQIHGLVFKLGFGFDKF--VLSSLVSMYAKFGEIDLGRRVFDA 182 (689)
Q Consensus 142 ~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 182 (689)
+.+.+++.|..++.. ...+.+...+..|+.+-+..+++.
T Consensus 88 --~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 88 --IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128 (231)
T ss_dssp --HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred --HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 344445555443321 112233344455666666555554
No 313
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=25.32 E-value=4.9e+02 Score=25.46 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMC 409 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~ 409 (689)
.+.++.-|...|+.++|.+.++++.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHcc
Confidence 3455556666666666666666654
No 314
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.03 E-value=2.7e+02 Score=24.59 Aligned_cols=62 Identities=10% Similarity=0.012 Sum_probs=39.5
Q ss_pred HHHHHHH---HcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccch-----hhHHHHHHHHHHhCCc
Q 036237 286 SMIAGYE---LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL-----NKGRWMHSYIVKNGFV 348 (689)
Q Consensus 286 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-----~~a~~i~~~~~~~g~~ 348 (689)
-+|+++. +..+++.|+-.+.+|++.| .|....-..++.+....|.- ..+...++.....|.+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3455554 4588999999999999999 66655555566666555532 2344444455555543
No 315
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.96 E-value=1.6e+02 Score=30.51 Aligned_cols=62 Identities=11% Similarity=0.013 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT---IEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 418 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
..++.++.-|.+.+.+++|..+..+..--....++ ...+-.+...+.-.+++.+|.+.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 35667777778888888888877766410000111 122234556677777888887777654
No 316
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=24.86 E-value=1.3e+02 Score=22.71 Aligned_cols=66 Identities=14% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHH
Q 036237 238 AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303 (689)
Q Consensus 238 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 303 (689)
...++..+.+.++.+-.-.-..-......++|.++++.++.++..++..++.++.+.|...-|..+
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~~L 89 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALL 89 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHHHH
No 317
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.69 E-value=83 Score=24.09 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=31.3
Q ss_pred CCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHH
Q 036237 69 NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALT 108 (689)
Q Consensus 69 g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 108 (689)
.+.+.|+++++.++ .+...+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~-~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLE-TRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHT-TSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHH-HcChHHHHHHHHHHHHcCcHHHHHH
Confidence 46889999999999 7888889999999977776655543
No 318
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.42 E-value=2.2e+02 Score=25.75 Aligned_cols=53 Identities=13% Similarity=-0.008 Sum_probs=28.0
Q ss_pred HHHhCCCchHHHHHHHHhHhCCCCCCccc-------HHHHHHHHH--hcCChHHHHHHHHHH
Q 036237 96 CYVFNQRSHEALTLFCDLLDRFLLPDNFT-------LPCVIKGAA--RLGAIKEGKQIHGLV 148 (689)
Q Consensus 96 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~ 148 (689)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-++.+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34456777776666666666555555332 233333332 456666555555543
No 319
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=23.82 E-value=3e+02 Score=22.53 Aligned_cols=106 Identities=10% Similarity=-0.025 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHhcccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccH--HHHHHHHHhcCChHHHH
Q 036237 68 INNLHYARSIFDRILQ---HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL--PCVIKGAARLGAIKEGK 142 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~ 142 (689)
.|+.+....+++.-+. ..+..-++.+. ..+..|+. ++++.+.+.|..++.... .+.+...+..|+.+
T Consensus 18 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~--- 89 (165)
T 3twr_A 18 AGDVETVKKLCTVQSVNCRDIEGRQSTPLH-FAAGYNRV----SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE--- 89 (165)
T ss_dssp HTCHHHHHHHCCTTTTTCCCTTTTCCCHHH-HHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH---
T ss_pred hCCHHHHHHHHHcCCCCccccccCCCCHHH-HHHHcChH----HHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHH---
Confidence 4777777777664321 12222223333 33345553 344555556655543321 12222333445544
Q ss_pred HHHHHHHHhCCCCchhH--HHHHHHHHHhcCChHHHHHHHhh
Q 036237 143 QIHGLVFKLGFGFDKFV--LSSLVSMYAKFGEIDLGRRVFDA 182 (689)
Q Consensus 143 ~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 182 (689)
+.+.+++.|..++... ..+.+...++.|+.+-+..+++.
T Consensus 90 -~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 130 (165)
T 3twr_A 90 -VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130 (165)
T ss_dssp -HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred -HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3344445554443221 11223334445555555555443
No 320
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.62 E-value=80 Score=16.72 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 036237 578 TDEIHSKLSEMRNKLKA 594 (689)
Q Consensus 578 ~~~~~~~l~~l~~~m~~ 594 (689)
.++.|+.++.+.+++++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46778888777777654
No 321
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.23 E-value=1.2e+02 Score=23.26 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 036237 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402 (689)
Q Consensus 365 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 402 (689)
...+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788999999999999999999999987767765544
No 322
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=22.99 E-value=4e+02 Score=23.60 Aligned_cols=66 Identities=11% Similarity=0.171 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA-ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 451 (689)
.|-..+..+ ..+...++.++|..|...|+--.. .-|......+...|++.+|..+|+.-++ .+-.|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRP 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBS
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 344444433 123355667777777666654442 2455555556666777777777666653 24444
No 323
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.57 E-value=5.3e+02 Score=24.88 Aligned_cols=59 Identities=15% Similarity=0.248 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcC-ChHHHHHHHHHhccCCC
Q 036237 254 NAMINGYMKAGDVDSACELFDDMEIRD---LITWNSMIAGYELNG-RFMEALELLETMLIGDV 312 (689)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~ 312 (689)
..++.-|...|++++|.+.++++..|. .+....+..++-+.. .-+.+..++..+.+.|+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 456677777777777777777776552 122222222222211 12344566666665544
No 324
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.15 E-value=2.3e+02 Score=27.16 Aligned_cols=65 Identities=20% Similarity=0.444 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCC--hHHHHHHHHHhccCCCCcChh
Q 036237 253 WNAMINGYMKAGDVDSACELFDDMEIRD---LITWNSMIAGYELNGR--FMEALELLETMLIGDVLPNDA 317 (689)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 317 (689)
...++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+....++..+...|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4567888888899999999999988762 3344555555554433 345668888887666554443
No 325
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.22 E-value=4.1e+02 Score=23.17 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=23.7
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHhhCC
Q 036237 133 ARLGAIKEGKQIHGLVFKLGFGFDKF--VLSSLVSMYAKFGEIDLGRRVFDAMD 184 (689)
Q Consensus 133 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~ 184 (689)
+..|+++..+ .+++.|..++.. ...+.+...++.|+.+-+..+++.-.
T Consensus 17 ~~~g~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 17 TQYGIYERCR----ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHcCChHHHH----HHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 4456654433 344455443321 12234455566667666666665544
No 326
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.56 E-value=7.1e+02 Score=28.19 Aligned_cols=48 Identities=4% Similarity=-0.117 Sum_probs=29.4
Q ss_pred hHHHHHHHHHcccchhhHHHHHHHHHHhCCccch----hHHhHHHhhHHhcC
Q 036237 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG----VLGTLLIQMYSKCG 365 (689)
Q Consensus 318 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~----~~~~~li~~~~~~g 365 (689)
-|..++..+-+.+.++.+.++-..+++.--..|. ..++.+..+++..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 4567777777777788777777777764333333 34555555555433
No 327
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.44 E-value=4.3e+02 Score=23.05 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=37.3
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcC
Q 036237 94 IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF--VLSSLVSMYAKFG 171 (689)
Q Consensus 94 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g 171 (689)
+...+..|+.+....++..-...-..+|..-.+.|.. .+..|+.+ +.+.+++.|..++.. ...+.+...+..|
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW-ACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHH-HHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 4445566777766666654322111122222233333 33445543 334444555444321 1122333444556
Q ss_pred ChHHHHHHHhh
Q 036237 172 EIDLGRRVFDA 182 (689)
Q Consensus 172 ~~~~A~~~~~~ 182 (689)
+.+-+..+++.
T Consensus 85 ~~~~v~~Ll~~ 95 (231)
T 3aji_A 85 XDEIVKALLVK 95 (231)
T ss_dssp CHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 66655555554
No 328
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=20.18 E-value=35 Score=21.31 Aligned_cols=11 Identities=36% Similarity=0.912 Sum_probs=9.1
Q ss_pred ccccccchhhH
Q 036237 645 NLRVCNDCHSV 655 (689)
Q Consensus 645 ~~~~c~~~~~~ 655 (689)
+.|+|.+|+.-
T Consensus 16 ~YRvC~~CgkP 26 (44)
T 2lo3_A 16 QYRVCEKCGKP 26 (44)
T ss_dssp CEEECTTTCCE
T ss_pred cchhhcccCCc
Confidence 68999999853
Done!