BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036238
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANV 91
++ +CAVCL+++ E + LP C HGFHA C+D WL HSTCPLCR V
Sbjct: 1 AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 46 CAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRAN 90
C VC+ S + L+VLP C+H FHA C+D WL + TCP+CRA+
Sbjct: 26 CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRAD 69
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 46 CAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANV 91
C +CLS + E ++ LP C H FH C+D WL+ + CP+CR ++
Sbjct: 17 CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 40 LGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANV 91
+G +C VC + E ++ LP C+H FH CI WL H +CP+CR ++
Sbjct: 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANV 91
L + CAVCL + L + P C H FH C+ WL + CPLC V
Sbjct: 11 ELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVP 92
++G C +C S+ + LP CHH FH C+ WL TCP+CR P
Sbjct: 36 AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 45 DCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93
+C + +S E C+H FH HCI WL CPL F
Sbjct: 64 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 40 LGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93
+ + +C + +S E C+H FH HCI WL CPL F
Sbjct: 42 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 95
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
Length = 98
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 45 DCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93
+C + +S E C+H FH HCI WL CPL F
Sbjct: 45 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 93
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 45 DCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93
+C + +S E C+H FH HCI WL CPL F
Sbjct: 53 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 45 DCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93
+C + +S E C+H FH HCI WL CPL F
Sbjct: 53 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 45 DCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93
+C + +S E C+H FH HCI WL CPL F
Sbjct: 55 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 103
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 40 LGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93
+ + +C + +S E C+H FH HCI WL CPL F
Sbjct: 32 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 85
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 61 VLPTCHHGFHAHCIDAWLVLHSTCPLCRANVP 92
V C H F ++CI+ W+ CP+CR ++
Sbjct: 67 VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 61 VLPTCHHGFHAHCIDAWLVLHSTCPLCRANVP 92
V C H F ++CI+ W+ CP+CR ++
Sbjct: 67 VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 61 VLPTCHHGFHAHCIDAWLVLHSTCPLCRANVP 92
V C H F ++CI+ W+ CP+CR ++
Sbjct: 78 VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 109
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 61 VLPTCHHGFHAHCIDAWLVLHSTCPLCR 88
+LP C H F CID W H CP+CR
Sbjct: 29 ILP-CAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 46 CAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRAN 90
C C ++ + + V C+H FH C+ W+ ++ CPLC+ +
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQD 73
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANV 91
++ C +CL S+ LP C H F CI W+ + TCPLC+ V
Sbjct: 4 VAERCPICLEDPSNYS--MALP-CLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 46 CAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLC 87
C +C + A ++P C H + + CI +L + CP C
Sbjct: 25 CGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 41 GISADCAVCL---SKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANV 91
G C +C+ S+I L V C H F + C+ L +TCP CR +
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 36 GSLSLGISADCAVCL---SKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANV 91
G++ G + C +C+ S+I L V C H F + C+ L +TCP CR +
Sbjct: 1 GAMGSG-TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 43 SADCAVCL---SKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANV 91
+ C +C+ S+I L V C H F + C+ L +TCP CR +
Sbjct: 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of
I222 At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of
I222 At 2.9a
Length = 796
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 13 HLCSKRMAQSNDRHH-GNKEKSSRGSLSLGISADCAVCLSKIS 54
H+ K+ ++ D G EK R G +A C VC + S
Sbjct: 2 HMAKKKATETTDEDEDGGSEKKYRKCEKAGCTATCPVCFASAS 44
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 43 SADCAVCL---SKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANV 91
+ C +C+ S+I L V C H F + C+ L +TCP CR +
Sbjct: 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|3PQ1|A Chain A, Crystal Structure Of Human Mitochondrial Poly(A)
Polymerase (Papd1)
pdb|3PQ1|B Chain B, Crystal Structure Of Human Mitochondrial Poly(A)
Polymerase (Papd1)
Length = 464
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 52 KISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCR 88
+I++ + L VL C F C+ +L++ CPL R
Sbjct: 226 RIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVR 262
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 43 SADCAVCL---SKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANV 91
+ C +C+ S+I L V C H F + C+ L +TCP CR +
Sbjct: 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From
Mus Musculus
Length = 55
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRA 89
S+ C +CL I ++ + + C H H C + L CPLC
Sbjct: 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSG 51
>pdb|1F32|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3
pdb|1F34|B Chain B, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 149
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 69 FHAHCIDAWLVLHSTCPLCRANVPFCSPQRAGLVS 103
F A D V H P C PFC PQ + +
Sbjct: 41 FAARVEDCTNVKHDMAPTCTKPPPFCGPQDMKMFN 75
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLC 87
+C +CL I ++ + + C H H C + L CPLC
Sbjct: 5 QQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|4ES4|A Chain A, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|C Chain C, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|E Chain E, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|G Chain G, Crystal Structure Of Ydiv And Flhd Complex
Length = 237
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 56 AEPLQVLPTCHHGFHAHCIDAWLVL 80
+E L++L +C H F H + AWL L
Sbjct: 62 SEQLELLKSCQHFFIQHKLFAWLNL 86
>pdb|3TLQ|A Chain A, Crystal Structure Of Eal-Like Domain Protein Ydiv
pdb|3TLQ|B Chain B, Crystal Structure Of Eal-Like Domain Protein Ydiv
Length = 242
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 56 AEPLQVLPTCHHGFHAHCIDAWLVL 80
+E L++L +C H F H + AWL L
Sbjct: 67 SEQLELLKSCQHFFIQHKLFAWLNL 91
>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The
Escherichia Coli Chaperone Protein Dnaj
Length = 79
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 45 DCAVCLSKISSAEP---LQVLPTCHHGFHAHCIDAWLVLHSTCPLCRAN 90
+C VC S A+P Q PTCH + + TCP C+
Sbjct: 13 ECDVCHG--SGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGR 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.135 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,177,087
Number of Sequences: 62578
Number of extensions: 100591
Number of successful extensions: 225
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 38
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)