Query 036238
Match_columns 106
No_of_seqs 221 out of 1258
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 18:32:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kiz_A E3 ubiquitin-protein li 99.8 6.2E-20 2.1E-24 102.9 6.2 59 39-98 10-68 (69)
2 2ep4_A Ring finger protein 24; 99.8 2E-19 6.8E-24 102.1 6.8 58 38-96 10-67 (74)
3 2ect_A Ring finger protein 126 99.8 2.2E-19 7.7E-24 102.8 7.0 59 38-97 10-68 (78)
4 1x4j_A Ring finger protein 38; 99.8 9.6E-20 3.3E-24 103.7 5.2 55 39-94 19-73 (75)
5 1iym_A EL5; ring-H2 finger, ub 99.8 1.1E-19 3.9E-24 97.6 4.3 52 41-92 3-54 (55)
6 2l0b_A E3 ubiquitin-protein li 99.8 5.3E-19 1.8E-23 104.3 5.2 53 40-93 37-89 (91)
7 2ecl_A Ring-box protein 2; RNF 99.7 2.4E-18 8.1E-23 99.5 5.7 53 42-94 14-77 (81)
8 2ea6_A Ring finger protein 4; 99.7 4.3E-18 1.5E-22 95.0 4.7 55 38-93 10-68 (69)
9 3ng2_A RNF4, snurf, ring finge 99.7 3.2E-18 1.1E-22 96.1 3.9 57 39-96 6-66 (71)
10 2ecm_A Ring finger and CHY zin 99.7 7.8E-18 2.7E-22 90.2 4.3 51 41-92 3-54 (55)
11 2djb_A Polycomb group ring fin 99.7 3E-17 1E-21 92.7 6.7 61 36-99 8-68 (72)
12 1v87_A Deltex protein 2; ring- 99.7 3.7E-17 1.3E-21 99.6 6.7 53 42-95 24-96 (114)
13 2xeu_A Ring finger protein 4; 99.7 1.4E-17 4.7E-22 91.6 3.4 53 42-95 2-58 (64)
14 2d8t_A Dactylidin, ring finger 99.7 1E-17 3.4E-22 94.4 2.8 52 39-94 11-62 (71)
15 3dpl_R Ring-box protein 1; ubi 99.7 3.3E-17 1.1E-21 99.1 5.0 51 42-93 36-101 (106)
16 2ecn_A Ring finger protein 141 99.7 3.1E-17 1.1E-21 92.0 3.2 52 39-95 11-62 (70)
17 2ecw_A Tripartite motif-contai 99.7 1.9E-16 6.5E-21 91.4 6.5 63 37-103 13-81 (85)
18 2d8s_A Cellular modulator of i 99.7 1.5E-16 5.3E-21 91.7 5.8 58 37-96 9-73 (80)
19 2ecv_A Tripartite motif-contai 99.7 2.8E-16 9.7E-21 90.6 6.8 63 37-103 13-81 (85)
20 2ct2_A Tripartite motif protei 99.7 2E-16 6.8E-21 92.0 6.1 57 37-94 9-69 (88)
21 2yur_A Retinoblastoma-binding 99.7 3.1E-16 1.1E-20 88.9 6.6 55 36-93 8-64 (74)
22 2ecy_A TNF receptor-associated 99.7 2.4E-16 8.3E-21 87.4 5.8 52 39-94 11-63 (66)
23 2egp_A Tripartite motif-contai 99.6 5.2E-17 1.8E-21 92.8 3.0 62 38-103 7-75 (79)
24 1chc_A Equine herpes virus-1 r 99.6 9.4E-17 3.2E-21 89.5 3.8 50 41-93 3-52 (68)
25 2ysl_A Tripartite motif-contai 99.6 3.8E-16 1.3E-20 88.0 6.3 54 38-95 15-71 (73)
26 2csy_A Zinc finger protein 183 99.6 1.9E-16 6.6E-21 91.1 4.9 51 38-92 10-60 (81)
27 1t1h_A Gspef-atpub14, armadill 99.6 1.7E-16 5.8E-21 90.7 3.8 57 39-99 4-61 (78)
28 4a0k_B E3 ubiquitin-protein li 99.6 4.3E-17 1.5E-21 100.1 0.2 52 42-94 47-113 (117)
29 4ayc_A E3 ubiquitin-protein li 99.6 2.2E-16 7.4E-21 99.4 3.3 49 42-94 52-100 (138)
30 2ct0_A Non-SMC element 1 homol 99.6 1E-15 3.5E-20 86.9 5.7 58 39-99 11-70 (74)
31 4ap4_A E3 ubiquitin ligase RNF 99.6 1E-15 3.5E-20 94.8 4.0 55 41-96 5-63 (133)
32 2ysj_A Tripartite motif-contai 99.6 5.2E-15 1.8E-19 81.2 6.1 46 38-87 15-63 (63)
33 3lrq_A E3 ubiquitin-protein li 99.6 3.7E-16 1.3E-20 93.4 1.4 54 40-97 19-74 (100)
34 1g25_A CDK-activating kinase a 99.6 3.5E-15 1.2E-19 82.5 4.1 54 42-96 2-58 (65)
35 2ecj_A Tripartite motif-contai 99.5 5.9E-15 2E-19 79.5 4.8 46 38-87 10-58 (58)
36 3ztg_A E3 ubiquitin-protein li 99.5 7E-15 2.4E-19 86.3 5.2 52 38-92 8-61 (92)
37 2y43_A E3 ubiquitin-protein li 99.5 1.8E-15 6.1E-20 90.1 2.6 51 41-95 20-71 (99)
38 2ckl_A Polycomb group ring fin 99.5 5.3E-15 1.8E-19 89.3 4.2 51 40-94 12-63 (108)
39 1jm7_A BRCA1, breast cancer ty 99.5 3.9E-15 1.3E-19 90.1 3.3 54 42-99 20-76 (112)
40 3fl2_A E3 ubiquitin-protein li 99.5 6.2E-15 2.1E-19 91.0 4.2 49 41-93 50-99 (124)
41 2ckl_B Ubiquitin ligase protei 99.5 1.3E-14 4.3E-19 93.6 4.3 50 40-93 51-102 (165)
42 4ap4_A E3 ubiquitin ligase RNF 99.5 1.2E-14 4.2E-19 89.9 3.5 55 40-95 69-127 (133)
43 2kre_A Ubiquitin conjugation f 99.5 3.3E-14 1.1E-18 85.1 5.1 56 38-97 24-79 (100)
44 1e4u_A Transcriptional repress 99.5 7.5E-14 2.6E-18 80.0 6.4 57 39-96 7-65 (78)
45 1wgm_A Ubiquitin conjugation f 99.5 7.8E-14 2.7E-18 83.1 5.7 56 38-97 17-73 (98)
46 1rmd_A RAG1; V(D)J recombinati 99.5 9.9E-15 3.4E-19 89.1 1.8 52 40-95 20-72 (116)
47 3l11_A E3 ubiquitin-protein li 99.5 8.9E-15 3.1E-19 89.2 1.5 51 39-93 11-62 (115)
48 1z6u_A NP95-like ring finger p 99.5 3.5E-14 1.2E-18 90.6 4.1 49 42-94 77-126 (150)
49 2vje_A E3 ubiquitin-protein li 99.5 3.4E-14 1.2E-18 78.5 3.4 50 39-92 4-56 (64)
50 3hct_A TNF receptor-associated 99.5 3.9E-14 1.3E-18 86.8 3.8 53 39-95 14-67 (118)
51 2kr4_A Ubiquitin conjugation f 99.4 6.1E-14 2.1E-18 81.6 3.6 54 39-96 10-63 (85)
52 1bor_A Transcription factor PM 99.4 7.9E-14 2.7E-18 75.0 2.6 48 41-95 4-51 (56)
53 2vje_B MDM4 protein; proto-onc 99.4 2E-13 6.8E-18 75.2 3.4 49 41-93 5-56 (63)
54 1jm7_B BARD1, BRCA1-associated 99.4 2.5E-14 8.4E-19 87.6 -0.4 52 41-98 20-72 (117)
55 3knv_A TNF receptor-associated 99.4 1.6E-13 5.6E-18 86.6 2.1 52 39-94 27-79 (141)
56 2y1n_A E3 ubiquitin-protein li 99.3 7.2E-13 2.5E-17 95.4 4.4 48 43-94 332-380 (389)
57 4ic3_A E3 ubiquitin-protein li 99.3 4.9E-13 1.7E-17 75.7 1.5 45 41-93 22-67 (74)
58 3hcs_A TNF receptor-associated 99.3 1.7E-12 5.8E-17 83.9 3.3 52 39-94 14-66 (170)
59 2c2l_A CHIP, carboxy terminus 99.3 2.8E-12 9.5E-17 87.9 3.6 54 39-96 204-258 (281)
60 2yu4_A E3 SUMO-protein ligase 99.2 1.9E-12 6.6E-17 76.4 1.5 50 41-93 5-63 (94)
61 2ea5_A Cell growth regulator w 99.2 1.4E-11 4.7E-16 68.7 4.6 48 39-94 11-59 (68)
62 2ecg_A Baculoviral IAP repeat- 99.2 7.4E-12 2.5E-16 70.9 2.1 46 41-94 23-69 (75)
63 3k1l_B Fancl; UBC, ring, RWD, 99.2 5.1E-12 1.8E-16 89.5 1.1 52 41-92 306-372 (381)
64 2f42_A STIP1 homology and U-bo 99.2 1.5E-11 5.2E-16 80.3 3.1 55 39-97 102-157 (179)
65 1vyx_A ORF K3, K3RING; zinc-bi 99.2 3E-11 1E-15 65.8 3.8 49 41-93 4-59 (60)
66 1wim_A KIAA0161 protein; ring 99.1 1.7E-11 5.9E-16 72.1 2.7 49 41-90 3-61 (94)
67 2yho_A E3 ubiquitin-protein li 99.1 2.1E-11 7.1E-16 69.8 1.0 45 41-93 16-61 (79)
68 3htk_C E3 SUMO-protein ligase 99.0 4.5E-10 1.5E-14 77.0 4.5 55 39-96 177-235 (267)
69 3t6p_A Baculoviral IAP repeat- 98.9 2E-10 6.7E-15 81.8 1.3 45 41-93 293-338 (345)
70 2bay_A PRE-mRNA splicing facto 98.9 3.5E-10 1.2E-14 61.7 1.8 49 43-95 3-52 (61)
71 3vk6_A E3 ubiquitin-protein li 98.8 4.8E-09 1.6E-13 62.0 3.3 47 45-94 3-50 (101)
72 3nw0_A Non-structural maintena 98.8 9.9E-09 3.4E-13 69.7 5.2 55 42-99 179-235 (238)
73 2lri_C Autoimmune regulator; Z 97.4 0.00024 8.3E-09 38.9 4.3 50 40-93 9-62 (66)
74 2ko5_A Ring finger protein Z; 97.2 0.00033 1.1E-08 40.7 3.1 49 40-94 25-74 (99)
75 2jun_A Midline-1; B-BOX, TRIM, 96.7 0.0014 4.8E-08 38.2 3.1 35 42-77 2-36 (101)
76 1wil_A KIAA1045 protein; ring 96.2 0.011 3.8E-07 33.6 4.6 39 37-77 9-47 (89)
77 2l5u_A Chromodomain-helicase-D 95.7 0.0063 2.1E-07 32.5 2.3 48 38-89 6-57 (61)
78 1fp0_A KAP-1 corepressor; PHD 95.5 0.017 6E-07 33.2 3.6 53 34-90 16-72 (88)
79 1mm2_A MI2-beta; PHD, zinc fin 95.1 0.0055 1.9E-07 32.7 0.7 46 41-90 7-56 (61)
80 2yql_A PHD finger protein 21A; 94.8 0.0039 1.3E-07 32.7 -0.4 46 40-89 6-55 (56)
81 1xwh_A Autoimmune regulator; P 94.5 0.0087 3E-07 32.4 0.6 48 40-91 5-56 (66)
82 1f62_A Transcription factor WS 94.5 0.022 7.6E-07 29.0 2.1 44 45-89 2-49 (51)
83 3o36_A Transcription intermedi 94.5 0.01 3.4E-07 38.4 0.8 47 42-92 3-53 (184)
84 3u5n_A E3 ubiquitin-protein li 94.3 0.0085 2.9E-07 39.4 0.2 48 41-92 5-56 (207)
85 1we9_A PHD finger family prote 94.3 0.013 4.5E-07 31.3 0.9 50 41-90 4-58 (64)
86 3m62_A Ubiquitin conjugation f 94.0 0.042 1.5E-06 43.8 3.6 54 39-96 887-941 (968)
87 2l43_A N-teminal domain from h 93.7 0.053 1.8E-06 31.0 2.7 55 38-92 20-77 (88)
88 2cs3_A Protein C14ORF4, MY039 93.4 0.23 7.9E-06 28.0 5.0 39 41-80 13-52 (93)
89 2k16_A Transcription initiatio 93.4 0.022 7.5E-07 31.4 0.8 51 41-92 16-70 (75)
90 2e6r_A Jumonji/ARID domain-con 93.4 0.015 5.1E-07 33.6 0.1 51 38-89 11-65 (92)
91 2vpb_A Hpygo1, pygopus homolog 93.3 0.067 2.3E-06 28.9 2.7 36 40-75 5-41 (65)
92 3v43_A Histone acetyltransfera 92.8 0.035 1.2E-06 33.1 1.1 45 45-89 63-111 (112)
93 1weo_A Cellulose synthase, cat 92.6 0.34 1.2E-05 27.8 5.0 51 42-92 15-69 (93)
94 4gne_A Histone-lysine N-methyl 92.1 0.15 5E-06 30.3 3.2 48 40-93 12-65 (107)
95 3lqh_A Histone-lysine N-methyl 92.0 0.084 2.9E-06 34.2 2.2 49 44-92 3-65 (183)
96 2puy_A PHD finger protein 21A; 91.8 0.03 1E-06 29.6 -0.1 45 42-90 4-52 (60)
97 2yt5_A Metal-response element- 91.4 0.11 3.7E-06 27.8 2.0 50 41-90 4-61 (66)
98 1z2q_A LM5-1; membrane protein 91.1 0.47 1.6E-05 26.6 4.6 37 41-77 19-55 (84)
99 1vfy_A Phosphatidylinositol-3- 91.1 0.2 7E-06 27.4 2.9 34 43-76 11-44 (73)
100 2lbm_A Transcriptional regulat 91.0 0.48 1.6E-05 29.5 4.8 46 40-89 60-116 (142)
101 1wep_A PHF8; structural genomi 90.8 0.57 2E-05 25.9 4.7 49 43-92 12-65 (79)
102 2ro1_A Transcription intermedi 90.8 0.057 2E-06 35.1 0.5 45 43-91 2-50 (189)
103 3v43_A Histone acetyltransfera 90.5 0.6 2.1E-05 27.5 4.8 34 42-75 4-42 (112)
104 2ysm_A Myeloid/lymphoid or mix 90.0 0.093 3.2E-06 31.0 1.0 38 41-79 5-42 (111)
105 1wen_A Inhibitor of growth fam 89.8 0.58 2E-05 25.5 4.0 46 41-91 14-66 (71)
106 1joc_A EEA1, early endosomal a 89.4 0.3 1E-05 29.6 2.9 35 42-76 68-102 (125)
107 1wem_A Death associated transc 89.3 0.2 6.7E-06 27.6 1.9 47 43-91 16-71 (76)
108 2yw8_A RUN and FYVE domain-con 89.2 0.3 1E-05 27.3 2.6 37 41-77 17-53 (82)
109 3t7l_A Zinc finger FYVE domain 89.1 0.64 2.2E-05 26.4 4.0 37 42-78 19-55 (90)
110 3shb_A E3 ubiquitin-protein li 89.0 0.06 2.1E-06 30.1 -0.4 44 45-89 28-76 (77)
111 1wev_A Riken cDNA 1110020M19; 89.0 0.15 5.1E-06 29.1 1.2 52 41-92 14-74 (88)
112 2ku3_A Bromodomain-containing 88.7 0.48 1.6E-05 25.9 3.2 50 40-89 13-65 (71)
113 2lv9_A Histone-lysine N-methyl 88.5 0.17 5.7E-06 29.4 1.2 45 43-89 28-75 (98)
114 2e6s_A E3 ubiquitin-protein li 88.5 0.12 4E-06 28.8 0.6 44 45-89 28-76 (77)
115 1wfk_A Zinc finger, FYVE domai 88.4 0.47 1.6E-05 26.9 3.1 37 41-77 7-43 (88)
116 1x4u_A Zinc finger, FYVE domai 88.3 0.4 1.4E-05 26.9 2.8 36 41-76 12-47 (84)
117 3ql9_A Transcriptional regulat 88.2 0.78 2.7E-05 28.0 4.2 46 40-89 54-110 (129)
118 2kgg_A Histone demethylase jar 88.1 0.19 6.4E-06 25.7 1.2 44 45-88 4-52 (52)
119 3zyq_A Hepatocyte growth facto 87.9 0.45 1.5E-05 31.6 3.2 37 41-77 162-198 (226)
120 1weu_A Inhibitor of growth fam 87.8 1.1 3.8E-05 25.7 4.4 46 42-92 35-87 (91)
121 1g47_A Pinch protein; LIM doma 87.3 0.83 2.8E-05 24.5 3.7 43 41-93 9-51 (77)
122 1dvp_A HRS, hepatocyte growth 87.2 0.52 1.8E-05 31.0 3.2 36 41-76 159-194 (220)
123 3asl_A E3 ubiquitin-protein li 87.0 0.14 4.7E-06 28.0 0.2 44 45-89 20-68 (70)
124 2kwj_A Zinc finger protein DPF 86.6 0.62 2.1E-05 27.6 3.0 34 44-77 2-41 (114)
125 2xb1_A Pygopus homolog 2, B-ce 86.0 0.48 1.7E-05 27.8 2.3 50 43-92 3-63 (105)
126 3ask_A E3 ubiquitin-protein li 85.2 0.26 9E-06 33.0 0.9 44 45-89 176-224 (226)
127 1y02_A CARP2, FYVE-ring finger 84.2 0.097 3.3E-06 31.7 -1.4 48 41-88 17-64 (120)
128 2dj7_A Actin-binding LIM prote 84.0 2.3 7.9E-05 23.2 4.5 42 40-92 12-53 (80)
129 2dar_A PDZ and LIM domain prot 83.9 1.4 5E-05 24.5 3.6 42 41-94 23-64 (90)
130 1wyh_A SLIM 2, skeletal muscle 83.8 1.5 5.1E-05 23.1 3.5 41 43-93 5-45 (72)
131 1x4l_A Skeletal muscle LIM-pro 82.9 2.1 7.1E-05 22.6 3.9 42 43-94 5-48 (72)
132 1x4k_A Skeletal muscle LIM-pro 82.6 1.6 5.5E-05 23.0 3.3 41 44-94 6-46 (72)
133 1zbd_B Rabphilin-3A; G protein 82.6 0.83 2.8E-05 28.0 2.3 35 41-75 53-88 (134)
134 2cu8_A Cysteine-rich protein 2 82.6 1.8 6.1E-05 23.2 3.6 41 43-94 9-49 (76)
135 1x61_A Thyroid receptor intera 82.6 2.3 7.7E-05 22.4 3.9 40 43-92 5-44 (72)
136 2zet_C Melanophilin; complex, 82.5 1.4 4.7E-05 27.7 3.4 34 41-74 66-100 (153)
137 1z60_A TFIIH basal transcripti 82.0 0.53 1.8E-05 24.9 1.1 43 44-87 16-58 (59)
138 2co8_A NEDD9 interacting prote 82.0 2.9 0.0001 22.8 4.4 44 41-95 13-56 (82)
139 2gmg_A Hypothetical protein PF 81.9 0.33 1.1E-05 28.6 0.4 26 64-94 72-97 (105)
140 3mjh_B Early endosome antigen 81.6 0.47 1.6E-05 22.2 0.7 16 41-56 3-18 (34)
141 1x62_A C-terminal LIM domain p 80.3 2.6 8.9E-05 22.7 3.7 40 41-92 13-52 (79)
142 1x63_A Skeletal muscle LIM-pro 80.0 4.2 0.00014 21.9 4.6 42 43-94 15-56 (82)
143 2d8y_A Eplin protein; LIM doma 79.7 3.5 0.00012 22.9 4.2 43 41-94 13-55 (91)
144 1x64_A Alpha-actinin-2 associa 79.5 5.9 0.0002 21.8 5.7 42 40-93 22-63 (89)
145 1wew_A DNA-binding family prot 79.3 1.2 4E-05 24.6 2.0 48 42-91 15-73 (78)
146 1x68_A FHL5 protein; four-and- 78.8 2.9 9.8E-05 22.3 3.6 40 43-92 5-46 (76)
147 1wee_A PHD finger family prote 78.2 2.5 8.4E-05 22.8 3.1 49 41-90 14-66 (72)
148 2csz_A Synaptotagmin-like prot 78.1 3.9 0.00013 22.6 3.9 35 40-74 22-57 (76)
149 2cor_A Pinch protein; LIM doma 78.0 3.8 0.00013 22.2 3.9 42 41-94 13-54 (79)
150 2ct7_A Ring finger protein 31; 76.6 0.96 3.3E-05 25.4 1.2 32 46-77 28-61 (86)
151 1iml_A CRIP, cysteine rich int 76.4 1.4 4.7E-05 23.7 1.8 41 43-88 27-68 (76)
152 3c6w_A P28ING5, inhibitor of g 75.2 0.71 2.4E-05 24.2 0.3 43 42-89 8-57 (59)
153 2vnf_A ING 4, P29ING4, inhibit 75.2 0.65 2.2E-05 24.4 0.2 42 43-89 10-58 (60)
154 2o35_A Hypothetical protein DU 74.7 1.3 4.3E-05 25.9 1.3 11 69-79 43-53 (105)
155 2ri7_A Nucleosome-remodeling f 74.7 2 7E-05 27.0 2.5 48 41-89 6-58 (174)
156 3fyb_A Protein of unknown func 74.6 1.3 4.4E-05 25.9 1.3 11 69-79 42-52 (104)
157 2d8z_A Four and A half LIM dom 74.6 4.7 0.00016 20.9 3.6 39 43-93 5-43 (70)
158 1wd2_A Ariadne-1 protein homol 73.9 0.57 1.9E-05 24.7 -0.3 38 43-80 6-47 (60)
159 2d8v_A Zinc finger FYVE domain 72.3 3.5 0.00012 22.2 2.6 33 41-78 6-39 (67)
160 2d8x_A Protein pinch; LIM doma 72.0 4.5 0.00015 21.1 3.1 40 43-94 5-44 (70)
161 3f6q_B LIM and senescent cell 71.9 3.9 0.00013 21.2 2.9 43 42-94 10-52 (72)
162 2cup_A Skeletal muscle LIM-pro 71.7 6 0.00021 22.1 3.8 46 43-93 33-78 (101)
163 3i2d_A E3 SUMO-protein ligase 71.5 2.5 8.7E-05 30.3 2.5 50 42-94 248-301 (371)
164 4fo9_A E3 SUMO-protein ligase 71.5 2.6 8.8E-05 30.1 2.6 50 42-94 214-267 (360)
165 1nyp_A Pinch protein; LIM doma 71.0 4.4 0.00015 20.8 2.9 39 43-93 5-43 (66)
166 2ehe_A Four and A half LIM dom 70.6 4.9 0.00017 21.6 3.2 40 44-93 16-55 (82)
167 2cur_A Skeletal muscle LIM-pro 70.6 4.6 0.00016 21.0 3.0 39 43-93 5-43 (69)
168 3mpx_A FYVE, rhogef and PH dom 69.9 0.93 3.2E-05 32.4 0.0 37 42-78 374-410 (434)
169 2jmo_A Parkin; IBR, E3 ligase, 69.2 1.8 6.2E-05 23.9 1.1 37 43-79 25-70 (80)
170 2g6q_A Inhibitor of growth pro 69.0 1.2 4.2E-05 23.5 0.4 42 43-89 11-59 (62)
171 3a1b_A DNA (cytosine-5)-methyl 68.8 4.4 0.00015 25.6 2.9 34 43-80 79-114 (159)
172 1zfo_A LAsp-1; LIM domain, zin 67.4 2.6 9E-05 18.8 1.3 28 44-74 4-31 (31)
173 2egq_A FHL1 protein; LIM domai 67.4 11 0.00039 19.8 4.2 42 43-94 15-59 (77)
174 2iyb_E Testin, TESS, TES; LIM 66.7 6.2 0.00021 20.3 2.9 41 44-94 3-45 (65)
175 1a7i_A QCRP2 (LIM1); LIM domai 66.5 1.9 6.6E-05 23.3 0.9 40 43-93 7-46 (81)
176 2jne_A Hypothetical protein YF 66.1 2.2 7.7E-05 24.8 1.1 43 42-93 31-73 (101)
177 2pv0_B DNA (cytosine-5)-methyl 66.0 5.9 0.0002 28.5 3.5 33 43-79 93-127 (386)
178 2l3k_A Rhombotin-2, linker, LI 65.8 4.3 0.00015 23.9 2.4 36 42-79 35-70 (123)
179 2jvx_A NF-kappa-B essential mo 64.9 1.3 4.3E-05 19.8 -0.1 11 82-92 4-14 (28)
180 2l4z_A DNA endonuclease RBBP8, 62.6 11 0.00038 22.2 3.9 39 43-92 61-99 (123)
181 2cuq_A Four and A half LIM dom 62.3 16 0.00053 19.4 4.2 39 43-93 15-53 (80)
182 2dlo_A Thyroid receptor-intera 62.0 7.1 0.00024 20.9 2.7 41 42-94 14-54 (81)
183 1v6g_A Actin binding LIM prote 61.4 7.5 0.00026 20.8 2.7 38 44-93 16-53 (81)
184 1wig_A KIAA1808 protein; LIM d 60.2 11 0.00037 19.9 3.2 37 44-92 6-42 (73)
185 1b8t_A Protein (CRP1); LIM dom 58.9 12 0.00042 23.6 3.8 27 44-73 8-34 (192)
186 1x3h_A Leupaxin; paxillin fami 57.6 16 0.00055 19.3 3.7 40 43-94 15-54 (80)
187 1x6a_A LIMK-2, LIM domain kina 57.5 11 0.00039 20.0 3.0 38 44-93 16-53 (81)
188 2kpi_A Uncharacterized protein 57.4 8.2 0.00028 19.8 2.3 29 41-69 8-38 (56)
189 1m3v_A FLIN4, fusion of the LI 56.6 12 0.0004 21.9 3.2 49 43-93 32-81 (122)
190 3o70_A PHD finger protein 13; 55.4 8.3 0.00028 20.5 2.1 47 41-89 17-66 (68)
191 2xjy_A Rhombotin-2; oncoprotei 53.8 11 0.00038 22.1 2.8 48 44-92 30-77 (131)
192 2jrp_A Putative cytoplasmic pr 53.0 6 0.0002 22.1 1.3 11 44-54 3-13 (81)
193 1rut_X Flinc4, fusion protein 52.7 9.5 0.00033 24.1 2.5 27 45-73 71-97 (188)
194 3o7a_A PHD finger protein 13 v 50.5 2.6 8.8E-05 21.2 -0.4 41 48-89 8-51 (52)
195 2rgt_A Fusion of LIM/homeobox 50.5 8.8 0.0003 23.8 2.0 10 45-54 35-44 (169)
196 3kqi_A GRC5, PHD finger protei 50.0 18 0.0006 19.4 3.0 48 43-90 9-61 (75)
197 2jtn_A LIM domain-binding prot 47.2 11 0.00037 23.7 2.1 44 44-93 88-131 (182)
198 2xqn_T Testin, TESS; metal-bin 46.6 19 0.00065 20.9 3.0 47 42-93 29-75 (126)
199 2lcq_A Putative toxin VAPC6; P 44.5 5.2 0.00018 24.9 0.2 24 63-92 136-159 (165)
200 1j2o_A FLIN2, fusion of rhombo 40.0 40 0.0014 19.2 3.7 35 43-79 30-65 (114)
201 2pk7_A Uncharacterized protein 39.9 6.4 0.00022 21.2 0.1 17 77-93 4-20 (69)
202 2jny_A Uncharacterized BCR; st 37.5 5.8 0.0002 21.3 -0.3 18 76-93 5-22 (67)
203 3i1m_R 30S ribosomal protein S 36.4 4.7 0.00016 22.2 -0.8 18 79-96 6-23 (75)
204 2akl_A PHNA-like protein PA012 36.0 22 0.00074 21.8 2.0 27 43-69 27-54 (138)
205 2lq6_A Bromodomain-containing 33.9 13 0.00043 20.8 0.7 33 43-77 17-51 (87)
206 2jmi_A Protein YNG1, ING1 homo 33.7 16 0.00056 20.6 1.2 43 42-89 25-75 (90)
207 2hf1_A Tetraacyldisaccharide-1 32.0 15 0.00051 19.7 0.8 13 81-93 8-20 (68)
208 1wvk_A AT2G23090/F21P24.15; st 32.0 36 0.0012 19.1 2.4 14 41-54 43-56 (86)
209 2fiy_A Protein FDHE homolog; F 31.7 27 0.00092 24.2 2.2 47 41-90 180-231 (309)
210 1l8d_A DNA double-strand break 31.2 11 0.00039 21.6 0.2 11 82-92 48-58 (112)
211 2jr6_A UPF0434 protein NMA0874 31.2 37 0.0013 18.0 2.3 13 42-54 7-19 (68)
212 2apo_B Ribosome biogenesis pro 30.2 34 0.0011 17.9 1.9 18 81-98 18-35 (60)
213 1loi_A Cyclic 3',5'-AMP specif 29.9 2.4 8E-05 17.9 -2.1 12 68-79 6-17 (26)
214 2js4_A UPF0434 protein BB2007; 29.9 55 0.0019 17.5 2.8 14 41-54 6-19 (70)
215 2vqe_R 30S ribosomal protein S 28.3 11 0.00039 21.2 -0.1 12 81-92 19-30 (88)
216 2vrw_B P95VAV, VAV1, proto-onc 27.6 56 0.0019 22.9 3.3 36 41-76 355-391 (406)
217 4bbq_A Lysine-specific demethy 27.1 26 0.00088 20.2 1.3 45 46-90 62-114 (117)
218 3vhs_A ATPase wrnip1; zinc fin 26.9 12 0.00041 16.2 -0.2 9 83-91 8-16 (29)
219 1yuz_A Nigerythrin; rubrythrin 26.9 43 0.0015 21.6 2.5 9 82-90 187-195 (202)
220 1wg2_A Zinc finger (AN1-like) 26.6 78 0.0027 16.7 3.4 28 41-71 13-40 (64)
221 2a20_A Regulating synaptic mem 25.9 73 0.0025 16.6 2.7 12 41-52 7-18 (62)
222 1lv3_A Hypothetical protein YA 24.5 17 0.00057 19.6 0.1 11 82-92 10-20 (68)
223 2ll1_A U1-TRTX-SP1A; toxin; NM 23.5 17 0.00059 16.0 0.0 8 65-73 2-9 (33)
224 3kv5_D JMJC domain-containing 23.3 62 0.0021 23.9 2.9 44 45-89 39-87 (488)
225 2rsd_A E3 SUMO-protein ligase 23.0 35 0.0012 17.8 1.2 46 42-89 9-64 (68)
226 4ayb_P DNA-directed RNA polyme 22.5 48 0.0016 16.5 1.5 11 82-92 24-34 (48)
227 1wfl_A Zinc finger protein 216 21.1 1.1E+02 0.0038 16.6 3.6 27 42-71 24-50 (74)
228 1e7l_A GP49, recombination end 20.6 63 0.0021 20.2 2.2 15 79-93 18-32 (157)
No 1
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=6.2e-20 Score=102.87 Aligned_cols=59 Identities=34% Similarity=0.877 Sum_probs=51.3
Q ss_pred CCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCSPQR 98 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 98 (106)
....+..|+||++.+..++.+..++ |||.||..||..|+..+.+||+||+++....+..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 68 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSE 68 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCCCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcCCCC
Confidence 3455678999999998777888898 9999999999999999999999999998776543
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=102.06 Aligned_cols=58 Identities=34% Similarity=0.814 Sum_probs=50.5
Q ss_pred CCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCCCC
Q 036238 38 LSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCSP 96 (106)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 96 (106)
.....+..|+||++.+..++.+..++ |||.||..||.+|++.+.+||+||+++.....
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 34456778999999999888888888 99999999999999999999999999976443
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=2.2e-19 Score=102.79 Aligned_cols=59 Identities=34% Similarity=0.803 Sum_probs=51.1
Q ss_pred CCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCCCCC
Q 036238 38 LSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCSPQ 97 (106)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 97 (106)
....++.+|+||++.|..++.+..++ |||.||..||.+|++.+.+||+||+++......
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 34456778999999999888888888 999999999999999999999999999875443
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.6e-20 Score=103.73 Aligned_cols=55 Identities=42% Similarity=0.928 Sum_probs=49.0
Q ss_pred CCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
...++.+|+||++.+..++.+..++ |||.||..||..|++.+.+||+||+++.+.
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3456678999999999888888898 999999999999999999999999998764
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.78 E-value=1.1e-19 Score=97.56 Aligned_cols=52 Identities=52% Similarity=1.116 Sum_probs=46.4
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVP 92 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 92 (106)
+++.+|+||++.+..++.+..++.|||.||..||.+|++++.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567899999999987777777669999999999999999999999999874
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.76 E-value=5.3e-19 Score=104.26 Aligned_cols=53 Identities=38% Similarity=0.888 Sum_probs=47.8
Q ss_pred CCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 40 LGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
..++..|+||++.|..++.+..++ |||.||..||..|+..+.+||+||+++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 345678999999998887888898 99999999999999999999999999875
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=99.49 Aligned_cols=53 Identities=26% Similarity=0.735 Sum_probs=42.8
Q ss_pred cccccccccccccc-----------CCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 42 ISADCAVCLSKISS-----------AEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 42 ~~~~C~ICl~~~~~-----------~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
+++.|+||++.|.+ ++.++.++.|||.||..||.+|++++.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45678888888854 344555555999999999999999999999999998653
No 8
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.3e-18 Score=94.97 Aligned_cols=55 Identities=25% Similarity=0.577 Sum_probs=45.8
Q ss_pred CCCCccccccccccccccC----CCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 38 LSLGISADCAVCLSKISSA----EPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~----~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
....+...|+||++.+.++ ..++.++ |||.||..||..|+..+.+||+||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3445677899999999754 3346677 99999999999999999999999998864
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.72 E-value=3.2e-18 Score=96.13 Aligned_cols=57 Identities=23% Similarity=0.498 Sum_probs=47.3
Q ss_pred CCCccccccccccccccC----CCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSA----EPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCSP 96 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~----~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 96 (106)
...++.+|+||++.+.++ +..+.++ |||.||..||.+|++.+.+||+||+++.....
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 345667899999998753 4446776 99999999999999999999999999986543
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.71 E-value=7.8e-18 Score=90.22 Aligned_cols=51 Identities=33% Similarity=0.726 Sum_probs=43.6
Q ss_pred CccccccccccccccCC-CeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCC
Q 036238 41 GISADCAVCLSKISSAE-PLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVP 92 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~-~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 92 (106)
.++.+|+||++.+.+++ .+..++ |||.||..||.+|+..+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45678999999996543 566777 9999999999999999999999999875
No 11
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=92.67 Aligned_cols=61 Identities=23% Similarity=0.444 Sum_probs=48.6
Q ss_pred CCCCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCCCCCCC
Q 036238 36 GSLSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCSPQRA 99 (106)
Q Consensus 36 ~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~ 99 (106)
......++..|+||++.+.++ +.+++ |||.||..||..|+..+.+||+||+++....+..+
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred hHhhcCCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 334456678899999998753 33346 99999999999999999999999999987665543
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.70 E-value=3.7e-17 Score=99.61 Aligned_cols=53 Identities=26% Similarity=0.538 Sum_probs=42.4
Q ss_pred ccccccccccccccCC---------------CeeEeCCCCccccHhhHHHHH-----hCCCCCcccCCCCCCCC
Q 036238 42 ISADCAVCLSKISSAE---------------PLQVLPTCHHGFHAHCIDAWL-----VLHSTCPLCRANVPFCS 95 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~Fh~~Ci~~wl-----~~~~~CP~Cr~~~~~~~ 95 (106)
.+.+|+||++.|..+. .+..++ |+|.||..||..|+ ..+.+||+||+.+....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 3568999999997543 233666 99999999999999 45678999999987653
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=91.61 Aligned_cols=53 Identities=25% Similarity=0.573 Sum_probs=45.0
Q ss_pred ccccccccccccccC----CCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCCC
Q 036238 42 ISADCAVCLSKISSA----EPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCS 95 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 95 (106)
++.+|+||++.+.++ +.+..++ |||.||..|+.+|++++.+||+||+++....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 456899999998753 3456777 9999999999999999999999999987643
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1e-17 Score=94.40 Aligned_cols=52 Identities=31% Similarity=0.627 Sum_probs=44.6
Q ss_pred CCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
...++..|+||++.+.++ +.++ |||.||..||..|+..+.+||+||+++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred cCCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 345667899999998643 6777 999999999999999999999999998754
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.68 E-value=3.3e-17 Score=99.12 Aligned_cols=51 Identities=33% Similarity=0.753 Sum_probs=43.1
Q ss_pred ccccccccccccccCC---------------CeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 42 ISADCAVCLSKISSAE---------------PLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
+++.|+||++.|..+. .++.++ |+|.||..||.+|+.++.+||+||+++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 5678999999987541 355666 99999999999999999999999999754
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.1e-17 Score=91.99 Aligned_cols=52 Identities=33% Similarity=0.866 Sum_probs=44.9
Q ss_pred CCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCS 95 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 95 (106)
...+...|+||++.+.+ +.++ |||.||..|+.+|+..+.+||+||+++....
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 34567789999999864 6787 9999999999999999999999999987654
No 17
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.9e-16 Score=91.37 Aligned_cols=63 Identities=24% Similarity=0.514 Sum_probs=49.8
Q ss_pred CCCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhC------CCCCcccCCCCCCCCCCCCCCcc
Q 036238 37 SLSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL------HSTCPLCRANVPFCSPQRAGLVS 103 (106)
Q Consensus 37 ~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~~~~~~~~~~~~ 103 (106)
.....++..|+||++.+.++ +.++ |||.||..|+..|+.. ...||+||.++.......+..+.
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVA 81 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCC
T ss_pred HHhCccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHH
Confidence 34456677899999998754 5777 9999999999999987 66899999999876555544433
No 18
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=91.70 Aligned_cols=58 Identities=26% Similarity=0.673 Sum_probs=46.6
Q ss_pred CCCCCccccccccccccccCCCeeEeCCCC-----ccccHhhHHHHHhCC--CCCcccCCCCCCCCC
Q 036238 37 SLSLGISADCAVCLSKISSAEPLQVLPTCH-----HGFHAHCIDAWLVLH--STCPLCRANVPFCSP 96 (106)
Q Consensus 37 ~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~~ 96 (106)
.....++..|.||++++.+++.+ ++| |+ |.||..||.+|+..+ .+||+||.++.....
T Consensus 9 s~~~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 9 SITPSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp CCCCTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 33445567899999999866554 688 96 999999999999875 489999999976543
No 19
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.8e-16 Score=90.62 Aligned_cols=63 Identities=24% Similarity=0.503 Sum_probs=50.0
Q ss_pred CCCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhC------CCCCcccCCCCCCCCCCCCCCcc
Q 036238 37 SLSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL------HSTCPLCRANVPFCSPQRAGLVS 103 (106)
Q Consensus 37 ~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~~~~~~~~~~~~ 103 (106)
.....+...|+||++.+.++ +.++ |||.||..|+..|+.. ...||+||.++.......+..+.
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 81 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCC
T ss_pred HHHccCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHH
Confidence 34456677899999998754 5567 9999999999999987 77899999999876655554443
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=92.04 Aligned_cols=57 Identities=19% Similarity=0.538 Sum_probs=46.9
Q ss_pred CCCCCccccccccccccccCCC-eeEeCCCCccccHhhHHHHHhCC---CCCcccCCCCCCC
Q 036238 37 SLSLGISADCAVCLSKISSAEP-LQVLPTCHHGFHAHCIDAWLVLH---STCPLCRANVPFC 94 (106)
Q Consensus 37 ~~~~~~~~~C~ICl~~~~~~~~-~~~l~~C~H~Fh~~Ci~~wl~~~---~~CP~Cr~~~~~~ 94 (106)
.....+..+|+||++.|.+.+. .+.++ |||.||..|+..|+..+ ..||+||+++...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhhccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3445667789999999986553 67777 99999999999999875 7899999988654
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.65 E-value=3.1e-16 Score=88.95 Aligned_cols=55 Identities=25% Similarity=0.530 Sum_probs=44.4
Q ss_pred CCCCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCC--CCCcccCCCCCC
Q 036238 36 GSLSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH--STCPLCRANVPF 93 (106)
Q Consensus 36 ~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 93 (106)
......++..|+||++.|.++ +.++.|||.||..||..|+..+ ..||+||+++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred ccccCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 344556778999999999754 5565599999999999999865 689999998654
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=87.43 Aligned_cols=52 Identities=21% Similarity=0.466 Sum_probs=43.0
Q ss_pred CCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHh-CCCCCcccCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLV-LHSTCPLCRANVPFC 94 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~~ 94 (106)
...++..|+||++.+.++ +.++ |||.||..||.+|+. .+.+||+||+++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp SCCCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 345677899999999755 4466 999999999999995 567899999998764
No 23
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.65 E-value=5.2e-17 Score=92.85 Aligned_cols=62 Identities=23% Similarity=0.473 Sum_probs=48.8
Q ss_pred CCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhC-------CCCCcccCCCCCCCCCCCCCCcc
Q 036238 38 LSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL-------HSTCPLCRANVPFCSPQRAGLVS 103 (106)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-------~~~CP~Cr~~~~~~~~~~~~~~~ 103 (106)
....++..|+||++.+.++ +.++ |||.||..||..|+.. ...||+||.++.......+..+.
T Consensus 7 ~~~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~ 75 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLA 75 (79)
T ss_dssp CCCCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSC
T ss_pred hhcccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHH
Confidence 3445677899999999754 4567 9999999999999987 56799999999876555554443
No 24
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.65 E-value=9.4e-17 Score=89.45 Aligned_cols=50 Identities=36% Similarity=0.843 Sum_probs=43.2
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
..+..|+||++.+.+ ....++ |||.||..|+..|+.++.+||+||+++..
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 345689999999863 356777 99999999999999999999999999875
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.8e-16 Score=88.02 Aligned_cols=54 Identities=26% Similarity=0.513 Sum_probs=44.2
Q ss_pred CCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHh---CCCCCcccCCCCCCCC
Q 036238 38 LSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLV---LHSTCPLCRANVPFCS 95 (106)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~---~~~~CP~Cr~~~~~~~ 95 (106)
....++..|+||++.+.+ .+.++ |||.||..||..|++ .+..||+||+++....
T Consensus 15 ~~~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred HhCccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 345667789999999864 36677 999999999999997 3568999999987653
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=91.12 Aligned_cols=51 Identities=20% Similarity=0.415 Sum_probs=43.7
Q ss_pred CCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCC
Q 036238 38 LSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVP 92 (106)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 92 (106)
........|+||++.+.++ ++++ |||.||..||..|+.....||+||+++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3345567899999998653 5677 9999999999999999999999999986
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.63 E-value=1.7e-16 Score=90.67 Aligned_cols=57 Identities=16% Similarity=0.374 Sum_probs=47.1
Q ss_pred CCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhC-CCCCcccCCCCCCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL-HSTCPLCRANVPFCSPQRA 99 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~~~ 99 (106)
...++..|+||++.|.++ +.++ |||.||..||..|+.. +.+||+||+++.......+
T Consensus 4 ~~~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n 61 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61 (78)
T ss_dssp CCSSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred CCcccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccC
Confidence 345677899999999754 6777 9999999999999997 7889999999976554433
No 28
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.61 E-value=4.3e-17 Score=100.10 Aligned_cols=52 Identities=33% Similarity=0.724 Sum_probs=1.0
Q ss_pred ccccccccccccccCC---------------CeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 42 ISADCAVCLSKISSAE---------------PLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
+++.|+||++.|.++. .+..++ |+|.||..||.+|+..+.+||+||+++...
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp CC------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 4578999999996521 222345 999999999999999999999999998653
No 29
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.61 E-value=2.2e-16 Score=99.39 Aligned_cols=49 Identities=29% Similarity=0.747 Sum_probs=42.9
Q ss_pred ccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
++..|+||++.+.++ +++| |||.||..||..|+..+.+||+||+++...
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 455799999998654 7788 999999999999999999999999998654
No 30
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=86.91 Aligned_cols=58 Identities=21% Similarity=0.481 Sum_probs=46.8
Q ss_pred CCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCC--CCCcccCCCCCCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH--STCPLCRANVPFCSPQRA 99 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~~~~~ 99 (106)
..+...+|+||.+.+..++ ..+.|+|.||..||.+|++.+ .+||+||++|....+..+
T Consensus 11 y~~~i~~C~IC~~~i~~g~---~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~~ 70 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKSG 70 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSE---ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCCC
T ss_pred ccCCCCcCcchhhHcccCC---ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCCC
Confidence 3455678999999998653 222599999999999999987 789999999987766554
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.58 E-value=1e-15 Score=94.79 Aligned_cols=55 Identities=24% Similarity=0.532 Sum_probs=46.5
Q ss_pred CccccccccccccccC----CCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCCCC
Q 036238 41 GISADCAVCLSKISSA----EPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCSP 96 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 96 (106)
.++.+|+||++.|.++ +.++.++ |||.||..||.+|++.+.+||+||+++.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 4567899999999754 4457777 99999999999999999999999999976543
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=5.2e-15 Score=81.21 Aligned_cols=46 Identities=28% Similarity=0.601 Sum_probs=38.3
Q ss_pred CCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHh---CCCCCccc
Q 036238 38 LSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLV---LHSTCPLC 87 (106)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~---~~~~CP~C 87 (106)
....++..|+||++.+.++ +.++ |||.||..||.+|++ .+..||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456677899999998754 6677 999999999999998 45689998
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.57 E-value=3.7e-16 Score=93.43 Aligned_cols=54 Identities=26% Similarity=0.619 Sum_probs=44.3
Q ss_pred CCccccccccccccccCCCeeE-eCCCCccccHhhHHHHHhCC-CCCcccCCCCCCCCCC
Q 036238 40 LGISADCAVCLSKISSAEPLQV-LPTCHHGFHAHCIDAWLVLH-STCPLCRANVPFCSPQ 97 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~~~~~-l~~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~~~~~ 97 (106)
..++..|+||++.+.++ +. ++ |||.||..||..|+..+ ..||+||.++......
T Consensus 19 l~~~~~C~IC~~~~~~p---~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDA---RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp HHHHTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CCCCCCCccCCccccCc---cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH
Confidence 34567899999999643 55 76 99999999999999987 6999999999754433
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.55 E-value=3.5e-15 Score=82.45 Aligned_cols=54 Identities=22% Similarity=0.444 Sum_probs=42.9
Q ss_pred cccccccccc-ccccCCCe-eEeCCCCccccHhhHHHHHhC-CCCCcccCCCCCCCCC
Q 036238 42 ISADCAVCLS-KISSAEPL-QVLPTCHHGFHAHCIDAWLVL-HSTCPLCRANVPFCSP 96 (106)
Q Consensus 42 ~~~~C~ICl~-~~~~~~~~-~~l~~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~ 96 (106)
++..|+||++ .+.++... +.++ |||.||..||.+|+.+ +..||+||+++.....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3568999999 77766443 4566 9999999999999765 4679999999976544
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.9e-15 Score=79.54 Aligned_cols=46 Identities=33% Similarity=0.866 Sum_probs=37.5
Q ss_pred CCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHh---CCCCCccc
Q 036238 38 LSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLV---LHSTCPLC 87 (106)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~---~~~~CP~C 87 (106)
....+...|+||++.+.++ +.++ |||.||..||.+|+. .+.+||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3445677899999999765 5577 999999999999954 46789998
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.54 E-value=7e-15 Score=86.30 Aligned_cols=52 Identities=27% Similarity=0.584 Sum_probs=42.4
Q ss_pred CCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhC--CCCCcccCCCCC
Q 036238 38 LSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL--HSTCPLCRANVP 92 (106)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 92 (106)
....++..|+||++.|.++ +.++.|||.||..||..|+.. +..||+||.++.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3446678899999999754 566559999999999999975 358999999973
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.54 E-value=1.8e-15 Score=90.08 Aligned_cols=51 Identities=24% Similarity=0.624 Sum_probs=43.2
Q ss_pred CccccccccccccccCCCeeEe-CCCCccccHhhHHHHHhCCCCCcccCCCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVL-PTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCS 95 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l-~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 95 (106)
.+...|+||++.+.++ +.+ + |||.||..||..|+..+.+||+||.++....
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA---MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HHHTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCCCCcccCChhhCCc---CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 4567899999998753 555 6 9999999999999999999999999987543
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.53 E-value=5.3e-15 Score=89.32 Aligned_cols=51 Identities=27% Similarity=0.582 Sum_probs=43.8
Q ss_pred CCccccccccccccccCCCeeEe-CCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 40 LGISADCAVCLSKISSAEPLQVL-PTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~~~~~l-~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
..++..|+||++.+.++ +.+ + |||.||..||..|+..+.+||+||.++...
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDA---TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSE---EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCc---CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 35577899999998643 555 7 999999999999999999999999998765
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.53 E-value=3.9e-15 Score=90.12 Aligned_cols=54 Identities=28% Similarity=0.591 Sum_probs=44.2
Q ss_pred ccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCC---CCcccCCCCCCCCCCCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHS---TCPLCRANVPFCSPQRA 99 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~---~CP~Cr~~~~~~~~~~~ 99 (106)
+...|+||++.+.++ +.++ |||.||..||..|+..+. .||+||.++.......+
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred CCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence 456899999998654 5567 999999999999998754 89999999987655444
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.53 E-value=6.2e-15 Score=91.03 Aligned_cols=49 Identities=20% Similarity=0.513 Sum_probs=41.9
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCC-CCcccCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHS-TCPLCRANVPF 93 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~~ 93 (106)
.++..|+||++.+.++ +.++ |||.||..||..|+..+. .||+||.++..
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4566799999999754 6677 999999999999998644 89999999976
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.50 E-value=1.3e-14 Score=93.60 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=41.9
Q ss_pred CCccccccccccccccCCCeeEe-CCCCccccHhhHHHHHhC-CCCCcccCCCCCC
Q 036238 40 LGISADCAVCLSKISSAEPLQVL-PTCHHGFHAHCIDAWLVL-HSTCPLCRANVPF 93 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~~~~~l-~~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 93 (106)
..+...|+||++.+.++ +.+ + |||.||..||..|+.. +..||+||.++..
T Consensus 51 ~~~~~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNT---MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CHHHHBCTTTSSBCSSE---EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCCcccChHhhCc---CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34566899999999753 455 6 9999999999999997 7789999999854
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.49 E-value=1.2e-14 Score=89.91 Aligned_cols=55 Identities=24% Similarity=0.524 Sum_probs=45.7
Q ss_pred CCccccccccccccccC----CCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCCC
Q 036238 40 LGISADCAVCLSKISSA----EPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCS 95 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~----~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 95 (106)
..+...|+||++.+..+ ...+.++ |||.||..||.+|++.+.+||+||+++....
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 45677899999998753 3446676 9999999999999999999999999987543
No 43
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.49 E-value=3.3e-14 Score=85.08 Aligned_cols=56 Identities=13% Similarity=-0.000 Sum_probs=47.8
Q ss_pred CCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCCCCC
Q 036238 38 LSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCSPQ 97 (106)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 97 (106)
....++..|+||++.|.++ ++++ |||.|+..||..|+..+.+||+||.++......
T Consensus 24 ~~~p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLE 79 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSE
T ss_pred ccCcHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhce
Confidence 3456678899999999766 7888 999999999999999888999999999765433
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.49 E-value=7.5e-14 Score=80.01 Aligned_cols=57 Identities=16% Similarity=0.369 Sum_probs=43.3
Q ss_pred CCCccccccccccccccCCC-eeEeCCCCccccHhhHHHHHhC-CCCCcccCCCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEP-LQVLPTCHHGFHAHCIDAWLVL-HSTCPLCRANVPFCSP 96 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~-~~~l~~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~ 96 (106)
...++.+|+||++.+..++. ..-++ |||.||..|+..++.. +..||+||+++.....
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 34667789999999864332 22244 9999999999998754 5679999999976544
No 45
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.47 E-value=7.8e-14 Score=83.13 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=47.6
Q ss_pred CCCCccccccccccccccCCCeeEeCCCC-ccccHhhHHHHHhCCCCCcccCCCCCCCCCC
Q 036238 38 LSLGISADCAVCLSKISSAEPLQVLPTCH-HGFHAHCIDAWLVLHSTCPLCRANVPFCSPQ 97 (106)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~-H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 97 (106)
....++..|+||++.|.++ ++++ || |.|+..||..|+..+.+||+||.++......
T Consensus 17 ~~~p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~ 73 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIR 73 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSE
T ss_pred hcCcHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhce
Confidence 3446678899999999765 7787 99 9999999999999888999999999865443
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.47 E-value=9.9e-15 Score=89.10 Aligned_cols=52 Identities=27% Similarity=0.460 Sum_probs=43.7
Q ss_pred CCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhC-CCCCcccCCCCCCCC
Q 036238 40 LGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL-HSTCPLCRANVPFCS 95 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 95 (106)
..++..|+||++.+.++ +.++ |||.||..||..|+.. +.+||+||.++....
T Consensus 20 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 20 FVKSISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHHHTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred ccCCCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 34567899999998654 5677 9999999999999987 778999999987644
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.47 E-value=8.9e-15 Score=89.18 Aligned_cols=51 Identities=24% Similarity=0.617 Sum_probs=42.9
Q ss_pred CCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhC-CCCCcccCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL-HSTCPLCRANVPF 93 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 93 (106)
...++..|+||++.+.++ +.++ |||.||..||..|+.. +..||+||.++..
T Consensus 11 ~~~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 345677899999998754 6677 9999999999999987 6689999999863
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.46 E-value=3.5e-14 Score=90.57 Aligned_cols=49 Identities=20% Similarity=0.497 Sum_probs=42.3
Q ss_pred ccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCC-CCcccCCCCCCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHS-TCPLCRANVPFC 94 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 94 (106)
+...|+||++.+.++ ++++ |||.||..||..|+..+. .||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 456799999998654 6677 999999999999999754 899999999876
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.46 E-value=3.4e-14 Score=78.51 Aligned_cols=50 Identities=18% Similarity=0.421 Sum_probs=41.4
Q ss_pred CCCccccccccccccccCCCeeEe--CCCCcc-ccHhhHHHHHhCCCCCcccCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVL--PTCHHG-FHAHCIDAWLVLHSTCPLCRANVP 92 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l--~~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~ 92 (106)
...++.+|.||++...+ ...+ | |||. |+..|+..|...+..||+||+++.
T Consensus 4 ~~~~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 4 PLNAIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp -CGGGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCCcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 34567789999998643 3555 8 9999 899999999998899999999885
No 50
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.46 E-value=3.9e-14 Score=86.81 Aligned_cols=53 Identities=25% Similarity=0.459 Sum_probs=44.6
Q ss_pred CCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCC-CCcccCCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHS-TCPLCRANVPFCS 95 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~~~~ 95 (106)
...++..|+||++.+.++ +.++ |||.||..||..|+..+. +||+||.++....
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 456677999999998754 6677 999999999999998765 8999999987643
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.44 E-value=6.1e-14 Score=81.56 Aligned_cols=54 Identities=13% Similarity=-0.007 Sum_probs=46.5
Q ss_pred CCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCSP 96 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 96 (106)
...++..|+||++.|.++ ++++ |||.|+..||..|+..+.+||+||.++.....
T Consensus 10 ~~p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESML 63 (85)
T ss_dssp TCCTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred cCchheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhc
Confidence 345678899999999765 7888 99999999999999988899999999876443
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.41 E-value=7.9e-14 Score=75.03 Aligned_cols=48 Identities=27% Similarity=0.666 Sum_probs=39.7
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCS 95 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 95 (106)
.+...|+||++.+.++ +.++ |||.||..|+..| ...||+||+++....
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 4566799999999755 6777 9999999999873 678999999987644
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.39 E-value=2e-13 Score=75.17 Aligned_cols=49 Identities=16% Similarity=0.488 Sum_probs=40.4
Q ss_pred CccccccccccccccCCCeeEe--CCCCcc-ccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVL--PTCHHG-FHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l--~~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
+.+..|.||++...+ ..++ | |||. |+..|+..|.+.+..||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD---GNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSC---EEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCC---eEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 446689999998643 2444 8 9998 9999999999888899999998853
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.39 E-value=2.5e-14 Score=87.58 Aligned_cols=52 Identities=19% Similarity=0.472 Sum_probs=42.6
Q ss_pred CccccccccccccccCCCeeEe-CCCCccccHhhHHHHHhCCCCCcccCCCCCCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVL-PTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCSPQR 98 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l-~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 98 (106)
.+...|+||++.|.++ +.+ + |||.||..||..|+. ..||+||.++.......
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~ 72 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKI 72 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCC
T ss_pred hhCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCccccccc
Confidence 4567899999999754 555 7 999999999999987 78999999986554443
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.36 E-value=1.6e-13 Score=86.62 Aligned_cols=52 Identities=17% Similarity=0.416 Sum_probs=43.2
Q ss_pred CCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCC-CCcccCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHS-TCPLCRANVPFC 94 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 94 (106)
...++..|+||++.+.++ +.++ |||.||..||..|+..+. +||+||.++...
T Consensus 27 ~l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred cCCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 446678899999999755 6677 999999999999998654 899999987543
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.33 E-value=7.2e-13 Score=95.37 Aligned_cols=48 Identities=23% Similarity=0.663 Sum_probs=41.5
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHh-CCCCCcccCCCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLV-LHSTCPLCRANVPFC 94 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~~ 94 (106)
...|+||++.+.+ ++.+| |||.||..|+..|+. .+.+||+||+++...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3589999999853 47788 999999999999999 688999999988753
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.30 E-value=4.9e-13 Score=75.72 Aligned_cols=45 Identities=24% Similarity=0.691 Sum_probs=38.3
Q ss_pred CccccccccccccccCCCeeEeCCCCcc-ccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHG-FHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
.++..|+||++.+. ..+.+| |||. ||..|+..| ..||+||+++..
T Consensus 22 ~~~~~C~iC~~~~~---~~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNI---AIVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBC---CEEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCC---CEEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 45668999999875 347788 9999 999999998 889999998864
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.28 E-value=1.7e-12 Score=83.90 Aligned_cols=52 Identities=25% Similarity=0.462 Sum_probs=44.2
Q ss_pred CCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCC-CCCcccCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH-STCPLCRANVPFC 94 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~~ 94 (106)
...+...|+||++.+.++ +.++ |||.||..||.+|+..+ .+||+||.++...
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 456778999999999755 6677 99999999999999864 4899999998764
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.25 E-value=2.8e-12 Score=87.89 Aligned_cols=54 Identities=9% Similarity=0.055 Sum_probs=44.9
Q ss_pred CCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhC-CCCCcccCCCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL-HSTCPLCRANVPFCSP 96 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~ 96 (106)
...+...|+||++.|.++ +++| |||.|+..||..|+.. +.+||+||.++.....
T Consensus 204 ~~~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l 258 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL 258 (281)
T ss_dssp CCCSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC
T ss_pred CCCcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcC
Confidence 445677899999999765 7888 9999999999999986 4459999999975443
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=1.9e-12 Score=76.40 Aligned_cols=50 Identities=14% Similarity=0.358 Sum_probs=40.5
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCC------CCCcc--cCCC-CCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH------STCPL--CRAN-VPF 93 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~------~~CP~--Cr~~-~~~ 93 (106)
..+..|+||++.|.++ ++++.|||.|+..||..|+..+ .+||+ |+.. +..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 4567899999999754 6663499999999999999863 48999 9876 543
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.4e-11 Score=68.73 Aligned_cols=48 Identities=33% Similarity=0.687 Sum_probs=38.8
Q ss_pred CCCccccccccccccccCCCeeEeCCCCcc-ccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHG-FHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
...++..|.||++... .++.+| |||. ||..|+.. ...||+||+++...
T Consensus 11 ~~~~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTV---NWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSCC---CCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCCC---CEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 3455678999999854 457888 9999 99999984 47899999998753
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=7.4e-12 Score=70.90 Aligned_cols=46 Identities=24% Similarity=0.666 Sum_probs=37.2
Q ss_pred CccccccccccccccCCCeeEeCCCCcc-ccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHG-FHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
.++..|+||++.+.+ ++.+| |||. ||..|+.. ...||+||+++...
T Consensus 23 ~~~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 23 QEEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 445679999999754 46778 9999 99999964 37899999998653
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.16 E-value=5.1e-12 Score=89.51 Aligned_cols=52 Identities=21% Similarity=0.616 Sum_probs=39.7
Q ss_pred CccccccccccccccCCCee----EeCCCCccccHhhHHHHHhCC-----------CCCcccCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQ----VLPTCHHGFHAHCIDAWLVLH-----------STCPLCRANVP 92 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~----~l~~C~H~Fh~~Ci~~wl~~~-----------~~CP~Cr~~~~ 92 (106)
....+|+||++.+.++..+. ..+.|||.||..|+.+|++.. .+||+||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45668999999987633221 122599999999999999752 36999999876
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.15 E-value=1.5e-11 Score=80.33 Aligned_cols=55 Identities=9% Similarity=0.031 Sum_probs=45.4
Q ss_pred CCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhC-CCCCcccCCCCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL-HSTCPLCRANVPFCSPQ 97 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~ 97 (106)
...+...|+||++.|.+| +++| |||.|+..||..|+.. +.+||+|+.++......
T Consensus 102 ~ip~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~ 157 (179)
T 2f42_A 102 EIPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLI 157 (179)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CCcHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCc
Confidence 346678899999999865 7778 9999999999999986 35799999998765433
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.15 E-value=3e-11 Score=65.77 Aligned_cols=49 Identities=18% Similarity=0.602 Sum_probs=38.1
Q ss_pred CccccccccccccccCCCeeEeCCCC--c---cccHhhHHHHHhC--CCCCcccCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCH--H---GFHAHCIDAWLVL--HSTCPLCRANVPF 93 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~--H---~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 93 (106)
++...|.||+++.. +. .++| |. | .||..|+.+|+.. +.+||+|+.++..
T Consensus 4 ~~~~~CrIC~~~~~--~~-l~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NE-RFRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS--CC-CCCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC--Cc-eecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45668999999843 33 3577 65 4 8999999999975 6789999998864
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=1.7e-11 Score=72.12 Aligned_cols=49 Identities=22% Similarity=0.589 Sum_probs=39.0
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhC--------CCCCcc--cCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL--------HSTCPL--CRAN 90 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~--------~~~CP~--Cr~~ 90 (106)
.+..+|+||++.+..++.+...+ |||.||.+|+..++.. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 34668999999987664444456 9999999999999973 236999 9988
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.08 E-value=2.1e-11 Score=69.85 Aligned_cols=45 Identities=27% Similarity=0.609 Sum_probs=37.4
Q ss_pred CccccccccccccccCCCeeEeCCCCcc-ccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHG-FHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
.++..|+||++.+. .++.+| |||. ||..|+..| ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEI---NSTFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBC---CEEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCCEeEEeCcccC---cEEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 34568999999864 457888 9999 999999876 489999998864
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.97 E-value=4.5e-10 Score=77.02 Aligned_cols=55 Identities=22% Similarity=0.370 Sum_probs=42.9
Q ss_pred CCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCC--CCCcc--cCCCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH--STCPL--CRANVPFCSP 96 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~--~~CP~--Cr~~~~~~~~ 96 (106)
....+..|+||++.|.++ +.... |||.|+..||..|+..+ ..||+ ||+.+.....
T Consensus 177 ~~~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp SSBCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred CCceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 345667899999999754 33345 99999999999999864 46999 9998865443
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.92 E-value=2e-10 Score=81.84 Aligned_cols=45 Identities=29% Similarity=0.680 Sum_probs=38.1
Q ss_pred CccccccccccccccCCCeeEeCCCCcc-ccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHG-FHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
.++..|+||++.+.+ ++.+| |||. ||..|+..| ..||+||.++..
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 345689999999753 47788 9999 999999988 789999998864
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.91 E-value=3.5e-10 Score=61.68 Aligned_cols=49 Identities=8% Similarity=0.103 Sum_probs=41.9
Q ss_pred cccccccccccccCCCeeEe-CCCCccccHhhHHHHHhCCCCCcccCCCCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVL-PTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCS 95 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l-~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 95 (106)
...|+|+++.+.++ +++ + +||.|...||.+|+..+.+||+.++++....
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCCC---EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 35799999999855 666 6 9999999999999998888999999987644
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.77 E-value=4.8e-09 Score=61.96 Aligned_cols=47 Identities=26% Similarity=0.414 Sum_probs=38.1
Q ss_pred cccccccccccCCCeeEeCCCCccccHhhHHHHHhC-CCCCcccCCCCCCC
Q 036238 45 DCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL-HSTCPLCRANVPFC 94 (106)
Q Consensus 45 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 94 (106)
-|.+|--++. ...++.| |+|+||.+|+..|.++ .++||+|+.++...
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 4777866664 4567888 9999999999999865 67899999998753
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.76 E-value=9.9e-09 Score=69.71 Aligned_cols=55 Identities=24% Similarity=0.510 Sum_probs=44.7
Q ss_pred ccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCC--CCCcccCCCCCCCCCCCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH--STCPLCRANVPFCSPQRA 99 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~~~~~ 99 (106)
....|.||.+.+..+ ...+.|+|.||..|+..|++.+ ..||.|+.+|+...|...
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~~~ 235 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKVF 235 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCCCC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Confidence 356799999998755 4455699999999999999864 489999999988766543
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.41 E-value=0.00024 Score=38.86 Aligned_cols=50 Identities=24% Similarity=0.404 Sum_probs=36.4
Q ss_pred CCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCC----CCcccCCCCCC
Q 036238 40 LGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHS----TCPLCRANVPF 93 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~----~CP~Cr~~~~~ 93 (106)
......|.||.+. ..+..-..|...||..|+...+.... .||.|+....+
T Consensus 9 ~~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 9 LAPGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp CCTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 3445679999754 45566667999999999988776532 59999765443
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.16 E-value=0.00033 Score=40.73 Aligned_cols=49 Identities=22% Similarity=0.503 Sum_probs=37.9
Q ss_pred CCccccccccccccccCCCeeEeCCCC-ccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 40 LGISADCAVCLSKISSAEPLQVLPTCH-HGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~~~~~l~~C~-H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
.-.-..|-.|+-... ..+ . |. |.+|..|+..-+..+..||+|..+++.+
T Consensus 25 ~~G~~nCKsCWf~~k---~LV--~-C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK---GLV--E-CNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCS---SEE--E-CSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccCcccChhhccccC---Cee--e-ecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 344567999987742 222 2 55 9999999999999999999999998754
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.67 E-value=0.0014 Score=38.20 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=24.4
Q ss_pred ccccccccccccccCCCeeEeCCCCccccHhhHHHH
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAW 77 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~w 77 (106)
++..|+||.+.+..+....-++ |+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 3567999998643221222265 9999999999983
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.17 E-value=0.011 Score=33.65 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=25.5
Q ss_pred CCCCCccccccccccccccCCCeeEeCCCCccccHhhHHHH
Q 036238 37 SLSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAW 77 (106)
Q Consensus 37 ~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~w 77 (106)
......++.|.||- .+...+... ...|+-+||..|+++-
T Consensus 9 ~e~~~~D~~C~VC~-~~t~~~l~p-CRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 9 REPVVNDEMCDVCE-VWTAESLFP-CRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCCSCCCTTTC-CCCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred ccCCCCCcccCccc-cccccceec-cccccccccHhhcccc
Confidence 34445778899994 333332221 1139999999999995
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=95.73 E-value=0.0063 Score=32.52 Aligned_cols=48 Identities=23% Similarity=0.555 Sum_probs=33.9
Q ss_pred CCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhC----CCCCcccCC
Q 036238 38 LSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL----HSTCPLCRA 89 (106)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~ 89 (106)
.....+..|.+|.+. ..+.....|...||..|+..-+.. .=.||.|+.
T Consensus 6 ~~~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 6 YETDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred ccCCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 344556789999874 355565668899999999875443 224999965
No 78
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=95.46 E-value=0.017 Score=33.17 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=36.9
Q ss_pred cCCCCCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCC----CCCcccCCC
Q 036238 34 SRGSLSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH----STCPLCRAN 90 (106)
Q Consensus 34 ~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~ 90 (106)
........++..|.+|.+. ..+.....|.-.||..|+..=+... =.||.|+..
T Consensus 16 ~~~~~~d~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 16 DEFGTLDDSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CCCCSSSSSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccccccCCCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3344455667789999865 3455556688899999997755442 249999754
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=95.09 E-value=0.0055 Score=32.74 Aligned_cols=46 Identities=28% Similarity=0.538 Sum_probs=31.8
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCC----CCCcccCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH----STCPLCRAN 90 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~ 90 (106)
.++..|.||.+. ..+.....|...||..|+..-+... =.||.|+..
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 456679999763 3445555688999999998644432 249999764
No 80
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.80 E-value=0.0039 Score=32.72 Aligned_cols=46 Identities=30% Similarity=0.611 Sum_probs=31.2
Q ss_pred CCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCC----CCCcccCC
Q 036238 40 LGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH----STCPLCRA 89 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~ 89 (106)
..++..|.+|.+. ..++....|...||..|+..-+... =.||.|+.
T Consensus 6 ~~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456679999875 3455555699999999988644432 23777753
No 81
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=94.53 E-value=0.0087 Score=32.42 Aligned_cols=48 Identities=25% Similarity=0.454 Sum_probs=33.2
Q ss_pred CCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCC----CCCcccCCCC
Q 036238 40 LGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH----STCPLCRANV 91 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~~ 91 (106)
..++..|.||.+. ..++....|.-.||..|+..-+... =.||.|...-
T Consensus 5 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 5 QKNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CSCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 3456789999864 3455555688999999988544432 2499996543
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=94.49 E-value=0.022 Score=29.02 Aligned_cols=44 Identities=30% Similarity=0.668 Sum_probs=29.4
Q ss_pred cccccccccccCCCeeEeCCCCccccHhhHHHHHhCC----CCCcccCC
Q 036238 45 DCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH----STCPLCRA 89 (106)
Q Consensus 45 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~ 89 (106)
.|.||...-. ++.+..-..|...||..|+..=+... =.||.|+.
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888876532 33555556799999999997544432 24998865
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=94.46 E-value=0.01 Score=38.36 Aligned_cols=47 Identities=28% Similarity=0.444 Sum_probs=33.9
Q ss_pred ccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCC----CCCcccCCCCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH----STCPLCRANVP 92 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~~~ 92 (106)
+++.|.+|.+. ..+.....|.-.||..|+..-+... =.||.|+..-.
T Consensus 3 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 45679999854 3455666799999999987665542 24999987543
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=94.30 E-value=0.0085 Score=39.44 Aligned_cols=48 Identities=27% Similarity=0.426 Sum_probs=34.4
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCC----CCCcccCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH----STCPLCRANVP 92 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~~~ 92 (106)
.+++.|.+|... ..+.....|...||..|+..-+... =.||.|+..-.
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 455679999754 3455666799999999997766542 25999987543
No 85
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.29 E-value=0.013 Score=31.34 Aligned_cols=50 Identities=24% Similarity=0.522 Sum_probs=34.0
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHh-----CCCCCcccCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLV-----LHSTCPLCRAN 90 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~~ 90 (106)
.+...|+||...+.++...+....|..=||..|+.--.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 455679999988765445555556888899999864322 23459999753
No 86
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.99 E-value=0.042 Score=43.79 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=45.5
Q ss_pred CCCccccccccccccccCCCeeEeCCCC-ccccHhhHHHHHhCCCCCcccCCCCCCCCC
Q 036238 39 SLGISADCAVCLSKISSAEPLQVLPTCH-HGFHAHCIDAWLVLHSTCPLCRANVPFCSP 96 (106)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~-H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 96 (106)
+..++..|||=++.|.+| +++| -| +.|-...|++|+..+.+||+=|+++.....
T Consensus 887 ~iP~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV 941 (968)
T ss_dssp CSCGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred CCcHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence 445677899999999766 7888 77 689999999999999999999999976543
No 87
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=93.65 E-value=0.053 Score=31.02 Aligned_cols=55 Identities=15% Similarity=0.368 Sum_probs=35.3
Q ss_pred CCCCcccccccccccc-ccCCCeeEeCCCCccccHhhHHHHHhC--CCCCcccCCCCC
Q 036238 38 LSLGISADCAVCLSKI-SSAEPLQVLPTCHHGFHAHCIDAWLVL--HSTCPLCRANVP 92 (106)
Q Consensus 38 ~~~~~~~~C~ICl~~~-~~~~~~~~l~~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 92 (106)
....++..|.||.+.- .+++.++....|.-.||..|+..-..- .=.||.|.....
T Consensus 20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 20 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 3345677899998753 223355555678889999998753211 224888866443
No 88
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.44 E-value=0.23 Score=28.02 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=29.3
Q ss_pred CccccccccccccccCCCeeEeC-CCCccccHhhHHHHHhC
Q 036238 41 GISADCAVCLSKISSAEPLQVLP-TCHHGFHAHCIDAWLVL 80 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~-~C~H~Fh~~Ci~~wl~~ 80 (106)
.....|.+|.+.+++. ..+..| .=.|.||..|-+..++.
T Consensus 13 ~a~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHh
Confidence 4556799999999865 444444 23499999999999874
No 89
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=93.43 E-value=0.022 Score=31.43 Aligned_cols=51 Identities=18% Similarity=0.374 Sum_probs=34.5
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhC----CCCCcccCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL----HSTCPLCRANVP 92 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~ 92 (106)
.+...|.||..... ++..+....|.--||..|+..-... .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 44556999987743 3445555668889999998754432 234999976543
No 90
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.35 E-value=0.015 Score=33.61 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=34.3
Q ss_pred CCCCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCC----CCCcccCC
Q 036238 38 LSLGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH----STCPLCRA 89 (106)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~ 89 (106)
....++..|.||...-. .+.++....|...||..|+..=+... =.||.|+.
T Consensus 11 ~~~~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hhccCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 34455667999987632 23455556799999999997544332 24999965
No 91
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=93.32 E-value=0.067 Score=28.85 Aligned_cols=36 Identities=17% Similarity=0.490 Sum_probs=25.9
Q ss_pred CCccccccccccccccCCCeeEeC-CCCccccHhhHH
Q 036238 40 LGISADCAVCLSKISSAEPLQVLP-TCHHGFHAHCID 75 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~~~~~l~-~C~H~Fh~~Ci~ 75 (106)
......|++|..++.+++..+... .|.--||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 345667999999987766666665 688889999975
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=92.82 E-value=0.035 Score=33.07 Aligned_cols=45 Identities=29% Similarity=0.693 Sum_probs=30.5
Q ss_pred cccccccccccCCCeeEeCCCCccccHhhHHHHHhCC----CCCcccCC
Q 036238 45 DCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH----STCPLCRA 89 (106)
Q Consensus 45 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~ 89 (106)
.|.||.+.-.+++.+..-..|...||..|+..-+... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5888876533334555666799999999987655432 25888874
No 93
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=92.58 E-value=0.34 Score=27.76 Aligned_cols=51 Identities=16% Similarity=0.337 Sum_probs=35.8
Q ss_pred cccccccccccccc---CCCeeEeCCCCccccHhhHHHHHhC-CCCCcccCCCCC
Q 036238 42 ISADCAVCLSKISS---AEPLQVLPTCHHGFHAHCIDAWLVL-HSTCPLCRANVP 92 (106)
Q Consensus 42 ~~~~C~ICl~~~~~---~~~~~~l~~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~ 92 (106)
....|.||-+++.. ++..+....|+--.|..|.+-=.+. ++.||.|+.++.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45689999998653 2222222247777899998865544 778999999886
No 94
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=92.06 E-value=0.15 Score=30.28 Aligned_cols=48 Identities=19% Similarity=0.388 Sum_probs=30.9
Q ss_pred CCccccccccccccccCCCeeEeC--CCCccccHhhHHHHHhCCC----CCcccCCCCCC
Q 036238 40 LGISADCAVCLSKISSAEPLQVLP--TCHHGFHAHCIDAWLVLHS----TCPLCRANVPF 93 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~~~~~l~--~C~H~Fh~~Ci~~wl~~~~----~CP~Cr~~~~~ 93 (106)
..+++.|.+|.+. ..++.-. .|...||..|+. +.... .||.|+-....
T Consensus 12 ~~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 12 QMHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp CSSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 3556679999842 3344443 488899999997 54422 48877655543
No 95
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=91.96 E-value=0.084 Score=34.24 Aligned_cols=49 Identities=20% Similarity=0.421 Sum_probs=34.4
Q ss_pred ccccccccccccCCC---eeEeCCCCccccHhhHHHH------Hh-----CCCCCcccCCCCC
Q 036238 44 ADCAVCLSKISSAEP---LQVLPTCHHGFHAHCIDAW------LV-----LHSTCPLCRANVP 92 (106)
Q Consensus 44 ~~C~ICl~~~~~~~~---~~~l~~C~H~Fh~~Ci~~w------l~-----~~~~CP~Cr~~~~ 92 (106)
..|+||...+.+++. .+....|..=||..|..-- +. ..-.||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 469999999987652 5555568889999997421 11 1457999987543
No 96
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=91.77 E-value=0.03 Score=29.58 Aligned_cols=45 Identities=29% Similarity=0.596 Sum_probs=31.1
Q ss_pred ccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCC----CCCcccCCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLH----STCPLCRAN 90 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~ 90 (106)
++..|.+|... ..+.....|.-.||..|+..-+... =.||.|+..
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 45679999874 3455555799999999988644432 248888543
No 97
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=91.43 E-value=0.11 Score=27.76 Aligned_cols=50 Identities=22% Similarity=0.543 Sum_probs=33.9
Q ss_pred Cccccccccccccc-cCCCeeEeCCCCccccHhhHHHHHh-------CCCCCcccCCC
Q 036238 41 GISADCAVCLSKIS-SAEPLQVLPTCHHGFHAHCIDAWLV-------LHSTCPLCRAN 90 (106)
Q Consensus 41 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~Fh~~Ci~~wl~-------~~~~CP~Cr~~ 90 (106)
.++..|.||..... ++..+.....|.-.||..|+..-+. ..=.||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45678999997643 3345666667999999999875331 12358888654
No 98
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=91.12 E-value=0.47 Score=26.60 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=26.7
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHH
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAW 77 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~w 77 (106)
.+...|.+|...|..-..-.....||++||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4456799999998754333344469999999997653
No 99
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=91.11 E-value=0.2 Score=27.38 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=24.4
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHH
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDA 76 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~ 76 (106)
+..|.+|...|..-..-.....||.+||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3589999999874333334446999999999653
No 100
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=90.97 E-value=0.48 Score=29.46 Aligned_cols=46 Identities=26% Similarity=0.509 Sum_probs=32.7
Q ss_pred CCccccccccccccccCCCeeEeCCCCccccHhhHHHHHh---------C--CCCCcccCC
Q 036238 40 LGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLV---------L--HSTCPLCRA 89 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~---------~--~~~CP~Cr~ 89 (106)
...++.|.+|.+. ..+.....|...||..|+..=+. . .=.||+|+.
T Consensus 60 Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456789999875 34555556889999999996553 1 235999974
No 101
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.79 E-value=0.57 Score=25.87 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=31.8
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHh-----CCCCCcccCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLV-----LHSTCPLCRANVP 92 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~~~~ 92 (106)
...| ||.....+....+....|..=||..|+.--.. ..-.||.|+....
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 3346 89888754444555556887899999853221 2346999987653
No 102
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=90.77 E-value=0.057 Score=35.06 Aligned_cols=45 Identities=27% Similarity=0.491 Sum_probs=31.2
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHhC----CCCCcccCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL----HSTCPLCRANV 91 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~ 91 (106)
++.|.+|.+. ..+.....|...||..|+..=+.. .-.||.|+..-
T Consensus 2 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC----SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC----CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4579999855 334455568899999999764443 22499998653
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=90.48 E-value=0.6 Score=27.55 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=24.4
Q ss_pred cccccccccccc-----ccCCCeeEeCCCCccccHhhHH
Q 036238 42 ISADCAVCLSKI-----SSAEPLQVLPTCHHGFHAHCID 75 (106)
Q Consensus 42 ~~~~C~ICl~~~-----~~~~~~~~l~~C~H~Fh~~Ci~ 75 (106)
....|.+|+..= ..++.++.-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 455799998752 2234556666799999999995
No 104
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=90.04 E-value=0.093 Score=30.97 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=26.7
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHh
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLV 79 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~ 79 (106)
.+++.|.||.+.-+. +..+.-..|+..||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccc
Confidence 456789999876321 23344456999999999987654
No 105
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=89.83 E-value=0.58 Score=25.50 Aligned_cols=46 Identities=22% Similarity=0.490 Sum_probs=28.2
Q ss_pred CccccccccccccccCCCeeEeCC--CC-ccccHhhHHHHHhC----CCCCcccCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPT--CH-HGFHAHCIDAWLVL----HSTCPLCRANV 91 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~--C~-H~Fh~~Ci~~wl~~----~~~CP~Cr~~~ 91 (106)
.+..-| ||..... + ..+.... |. .-||..|+. +.. +-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 344457 8987632 2 3333334 55 579999998 443 23599997654
No 106
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=89.37 E-value=0.3 Score=29.61 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=25.5
Q ss_pred ccccccccccccccCCCeeEeCCCCccccHhhHHH
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDA 76 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~ 76 (106)
+...|.+|...|..-..-.....||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34579999999875433344446999999999654
No 107
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.31 E-value=0.2 Score=27.57 Aligned_cols=47 Identities=19% Similarity=0.424 Sum_probs=30.1
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHH---------hCCCCCcccCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWL---------VLHSTCPLCRANV 91 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl---------~~~~~CP~Cr~~~ 91 (106)
...| ||...... ...+....|..=||..|+.--. ...-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4457 89887642 3444444588889999985211 2356799997643
No 108
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=89.17 E-value=0.3 Score=27.29 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=26.2
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHH
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAW 77 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~w 77 (106)
.+...|.+|...|..-..-.....||.+||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3445799999998744333344469999999997643
No 109
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=89.11 E-value=0.64 Score=26.45 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=26.7
Q ss_pred ccccccccccccccCCCeeEeCCCCccccHhhHHHHH
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWL 78 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl 78 (106)
+...|.+|...|..-..-.....||++||..|...+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 4457999999987543334444699999999976543
No 110
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=89.03 E-value=0.06 Score=30.07 Aligned_cols=44 Identities=27% Similarity=0.631 Sum_probs=28.0
Q ss_pred cccccccccccCCCeeEeCCCCccccHhhHHHHHhC---C--CCCcccCC
Q 036238 45 DCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL---H--STCPLCRA 89 (106)
Q Consensus 45 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~--~~CP~Cr~ 89 (106)
.|.||...- +++.+..-..|...||..|+..-+.. . =.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466676542 22345555568899999999865543 1 25888875
No 111
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.98 E-value=0.15 Score=29.05 Aligned_cols=52 Identities=19% Similarity=0.442 Sum_probs=35.6
Q ss_pred Ccccccccccccccc-CCCeeEeCCCCccccHhhHHHHHhC--------CCCCcccCCCCC
Q 036238 41 GISADCAVCLSKISS-AEPLQVLPTCHHGFHAHCIDAWLVL--------HSTCPLCRANVP 92 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~-~~~~~~l~~C~H~Fh~~Ci~~wl~~--------~~~CP~Cr~~~~ 92 (106)
+.+..|.||...-.. +..+.....|...||..|+..-+.. .=.||.|+....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 446679999876332 2456666679999999998865431 235999966443
No 112
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=88.70 E-value=0.48 Score=25.85 Aligned_cols=50 Identities=16% Similarity=0.438 Sum_probs=32.7
Q ss_pred CCcccccccccccc-ccCCCeeEeCCCCccccHhhHHHHHhC--CCCCcccCC
Q 036238 40 LGISADCAVCLSKI-SSAEPLQVLPTCHHGFHAHCIDAWLVL--HSTCPLCRA 89 (106)
Q Consensus 40 ~~~~~~C~ICl~~~-~~~~~~~~l~~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~ 89 (106)
..++..|.||.+.- .+++.++....|.-.||..|+..-..- .=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34566899998763 234466666679999999998742211 224777753
No 113
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.48 E-value=0.17 Score=29.41 Aligned_cols=45 Identities=16% Similarity=0.308 Sum_probs=29.4
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHhC---CCCCcccCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL---HSTCPLCRA 89 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~CP~Cr~ 89 (106)
...| ||...... ...+....|.--||..|+..=... .-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~-~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDD-GYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCS-SCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCC-CcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3457 88776543 345555568899999998653222 235999964
No 114
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.46 E-value=0.12 Score=28.81 Aligned_cols=44 Identities=25% Similarity=0.569 Sum_probs=29.6
Q ss_pred cccccccccccCCCeeEeCCCCccccHhhHHHHHhC-----CCCCcccCC
Q 036238 45 DCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL-----HSTCPLCRA 89 (106)
Q Consensus 45 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~ 89 (106)
.|.||... .++..+..-..|...||..|+..=+.. .=.||.|+.
T Consensus 28 ~C~vC~~~-~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGK-HEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCC-CCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCc-CCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68888764 233456666679999999998854432 124888864
No 115
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=88.43 E-value=0.47 Score=26.94 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=26.2
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHH
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAW 77 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~w 77 (106)
.+...|.+|...|..-..-.....||++||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 3455799999998754333344469999999997653
No 116
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.29 E-value=0.4 Score=26.87 Aligned_cols=36 Identities=17% Similarity=0.408 Sum_probs=25.2
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHH
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDA 76 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~ 76 (106)
.+...|.+|...|..-..--....||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 344579999999864433333446999999999553
No 117
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=88.16 E-value=0.78 Score=28.04 Aligned_cols=46 Identities=26% Similarity=0.573 Sum_probs=31.1
Q ss_pred CCccccccccccccccCCCeeEeCCCCccccHhhHHHHH------hC-----CCCCcccCC
Q 036238 40 LGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWL------VL-----HSTCPLCRA 89 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl------~~-----~~~CP~Cr~ 89 (106)
...++.|.||.+. ..+..-..|...||..|+..-+ +. .=.|++|+.
T Consensus 54 Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3455679999765 3444445688999999999742 11 235999954
No 118
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=88.14 E-value=0.19 Score=25.68 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=28.7
Q ss_pred cccccccccccCCCeeEeC-CCCccccHhhHHHHH----hCCCCCcccC
Q 036238 45 DCAVCLSKISSAEPLQVLP-TCHHGFHAHCIDAWL----VLHSTCPLCR 88 (106)
Q Consensus 45 ~C~ICl~~~~~~~~~~~l~-~C~H~Fh~~Ci~~wl----~~~~~CP~Cr 88 (106)
.|.+|..++.+++..+.-. .|.-=||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4788988876555555554 477779999965321 2355688885
No 119
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=87.93 E-value=0.45 Score=31.59 Aligned_cols=37 Identities=14% Similarity=0.332 Sum_probs=27.1
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHH
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAW 77 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~w 77 (106)
.++..|.+|...|..-..-.....||++||..|-...
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 3456899999998754333445569999999996643
No 120
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.82 E-value=1.1 Score=25.67 Aligned_cols=46 Identities=22% Similarity=0.475 Sum_probs=28.0
Q ss_pred ccccccccccccccCCCeeEeCC--CC-ccccHhhHHHHHhC----CCCCcccCCCCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLPT--CH-HGFHAHCIDAWLVL----HSTCPLCRANVP 92 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~ 92 (106)
+..-| ||..... + ..+.... |. .-||..|+. +.. +-.||.|+..-.
T Consensus 35 e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 34447 9988643 2 2333334 54 569999987 443 235999976543
No 121
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=87.35 E-value=0.83 Score=24.53 Aligned_cols=43 Identities=26% Similarity=0.459 Sum_probs=30.2
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
.....|+-|.+.+...+.++.. -|..||..| ..|-.|..++..
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 3456799999988754554332 577899988 458888887764
No 122
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=87.19 E-value=0.52 Score=31.03 Aligned_cols=36 Identities=14% Similarity=0.306 Sum_probs=26.4
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHH
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDA 76 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~ 76 (106)
.++..|.+|...|..-..-.....||++||..|...
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 345789999999875443344456999999999654
No 123
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=86.98 E-value=0.14 Score=27.97 Aligned_cols=44 Identities=27% Similarity=0.631 Sum_probs=28.0
Q ss_pred cccccccccccCCCeeEeCCCCccccHhhHHHHHhC-----CCCCcccCC
Q 036238 45 DCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL-----HSTCPLCRA 89 (106)
Q Consensus 45 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~ 89 (106)
.|.||...- ++..+..-..|...||..|+..=+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 467776542 22345555568899999998854433 224888865
No 124
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=86.64 E-value=0.62 Score=27.60 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=23.6
Q ss_pred cccccccccc------ccCCCeeEeCCCCccccHhhHHHH
Q 036238 44 ADCAVCLSKI------SSAEPLQVLPTCHHGFHAHCIDAW 77 (106)
Q Consensus 44 ~~C~ICl~~~------~~~~~~~~l~~C~H~Fh~~Ci~~w 77 (106)
+.|.||+..- .+++..+.-..|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 4688998753 123355555569999999998754
No 125
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=85.95 E-value=0.48 Score=27.79 Aligned_cols=50 Identities=20% Similarity=0.438 Sum_probs=34.1
Q ss_pred cccccccccccccCCCeeEeC-CCCccccHhhHHHHHh----------CCCCCcccCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLP-TCHHGFHAHCIDAWLV----------LHSTCPLCRANVP 92 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~-~C~H~Fh~~Ci~~wl~----------~~~~CP~Cr~~~~ 92 (106)
...|.||...+.+....+... .|..=||..|+.---. .+-.||.|+..-.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 457999999987655555554 5777899999752210 2335999976544
No 126
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=85.21 E-value=0.26 Score=32.98 Aligned_cols=44 Identities=27% Similarity=0.626 Sum_probs=26.4
Q ss_pred cccccccccccCCCeeEeCCCCccccHhhHHHHHhC--C---CCCcccCC
Q 036238 45 DCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL--H---STCPLCRA 89 (106)
Q Consensus 45 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~--~---~~CP~Cr~ 89 (106)
.|.+|...= ++..+.....|...||..|+..=+.. . =.||.|+.
T Consensus 176 ~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 578887642 23455566679999999999854443 1 24999965
No 127
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=84.15 E-value=0.097 Score=31.71 Aligned_cols=48 Identities=21% Similarity=0.463 Sum_probs=29.2
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCR 88 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr 88 (106)
.....|..|...|..-..-.....||.+||..|........+.|-.|-
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 334579999999864332234446999999999766554455566663
No 128
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=84.04 E-value=2.3 Score=23.19 Aligned_cols=42 Identities=21% Similarity=0.532 Sum_probs=30.6
Q ss_pred CCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCC
Q 036238 40 LGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVP 92 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 92 (106)
......|+-|-+.+.+++.+.. -+..||.+| ..|-.|+.+|.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 3445689999999876554433 567899988 45888988876
No 129
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.87 E-value=1.4 Score=24.46 Aligned_cols=42 Identities=19% Similarity=0.518 Sum_probs=30.0
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
.....|+-|-+.+.. .. +.. -+..||..| ..|-.|+.+|...
T Consensus 23 ~~~~~C~~C~~~I~~--~~-v~a-~~~~~H~~C--------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 23 KRTPMCAHCNQVIRG--PF-LVA-LGKSWHPEE--------FNCAHCKNTMAYI 64 (90)
T ss_dssp TCCCBBSSSCCBCCS--CE-EEE-TTEEECTTT--------CBCSSSCCBCSSS
T ss_pred CCCCCCccCCCEecc--eE-EEE-CCccccccC--------CccCCCCCCCCCC
Confidence 345679999998852 22 333 678999988 4588998888743
No 130
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.77 E-value=1.5 Score=23.11 Aligned_cols=41 Identities=20% Similarity=0.445 Sum_probs=27.4
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
...|+-|-+.+.+.+.+ +.. -+..||..| ..|-.|..++..
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a-~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEY-GGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECS-TTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccE-EEE-CccccCccc--------CeECCCCCcCCC
Confidence 34788888887654333 332 577888877 347788877764
No 131
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.95 E-value=2.1 Score=22.59 Aligned_cols=42 Identities=24% Similarity=0.479 Sum_probs=28.9
Q ss_pred ccccccccccccc--CCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 43 SADCAVCLSKISS--AEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 43 ~~~C~ICl~~~~~--~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
...|+-|-+.+.. ++.+ +.. -+..||.+|+ .|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a-~~~~wH~~CF--------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISF-EERQWHNDCF--------NCKKCSLSLVGR 48 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EEC-SSCEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCCcCCCccccCCCCcce-EEE-CCcccCcccC--------EeccCCCcCCCC
Confidence 4579999888875 2233 333 6788998884 588888887643
No 132
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.60 E-value=1.6 Score=22.99 Aligned_cols=41 Identities=17% Similarity=0.420 Sum_probs=27.8
Q ss_pred ccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 44 ADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 44 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
..|+.|-+.+.+.+.++.. =+..||..|+ .|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCCC
Confidence 4788898888755443332 5678888873 477888777543
No 133
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=82.59 E-value=0.83 Score=28.04 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=25.1
Q ss_pred Cccccccccccccc-cCCCeeEeCCCCccccHhhHH
Q 036238 41 GISADCAVCLSKIS-SAEPLQVLPTCHHGFHAHCID 75 (106)
Q Consensus 41 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~Fh~~Ci~ 75 (106)
.++..|.+|..+|. ....-.....|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35678999999984 223334555699999998854
No 134
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.59 E-value=1.8 Score=23.17 Aligned_cols=41 Identities=20% Similarity=0.465 Sum_probs=29.9
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
...|+.|-+.+.+.+.+ .. -+..||.+| ..|..|+.+|...
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SS-LGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EE-TTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEE--EE-CCeEeeCCC--------CCCCCCCCccCCC
Confidence 45799999988755433 33 678899988 4588898888643
No 135
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.56 E-value=2.3 Score=22.40 Aligned_cols=40 Identities=28% Similarity=0.585 Sum_probs=24.2
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVP 92 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 92 (106)
...|+.|-+.+...+.. +.. =+..||..| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a-~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAG-VVA-LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCC-EEC-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceE-EEE-CCCeEcccC--------CcccccCCcCC
Confidence 34677787776543322 222 466777777 34777777764
No 136
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=82.52 E-value=1.4 Score=27.67 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=24.4
Q ss_pred CccccccccccccccC-CCeeEeCCCCccccHhhH
Q 036238 41 GISADCAVCLSKISSA-EPLQVLPTCHHGFHAHCI 74 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~-~~~~~l~~C~H~Fh~~Ci 74 (106)
.++..|.+|..+|..- ..-....+|+|.+|..|-
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 3577899999987522 223444469999999996
No 137
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=82.03 E-value=0.53 Score=24.86 Aligned_cols=43 Identities=21% Similarity=0.406 Sum_probs=29.6
Q ss_pred ccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCccc
Q 036238 44 ADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLC 87 (106)
Q Consensus 44 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~C 87 (106)
..|--|...+.+. .....+.|++.|+.+|=.---+.=.+||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3599999988532 224456799999999965422334579988
No 138
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.97 E-value=2.9 Score=22.81 Aligned_cols=44 Identities=30% Similarity=0.458 Sum_probs=30.2
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFCS 95 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 95 (106)
.....|+.|-+.+...+.+. . =+..||..| ..|-.|+.+|....
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~--a-~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC--V-NGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC--B-TTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCCcccCCCcccceEEE--E-CCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 44568999999886554443 2 577899988 44777877776543
No 139
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=81.91 E-value=0.33 Score=28.64 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=17.2
Q ss_pred CCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 64 TCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 64 ~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
.||+.|. .-+.....||.|++..-..
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCC
Confidence 6999991 1123356799999876543
No 140
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=81.57 E-value=0.47 Score=22.24 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=11.6
Q ss_pred CccccccccccccccC
Q 036238 41 GISADCAVCLSKISSA 56 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~ 56 (106)
.+...||||+..+...
T Consensus 3 ~EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSA 18 (34)
T ss_dssp SEEEECTTTCCEESSH
T ss_pred CcccCCcHHHHHcCCH
Confidence 3457899998887654
No 141
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.33 E-value=2.6 Score=22.73 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=28.8
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVP 92 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 92 (106)
.....|+-|-+.+... .+.. -+..||..|+ .|-.|+.+|.
T Consensus 13 ~~~~~C~~C~~~I~~~---~~~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV---FVKL-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCSS---CEEC-SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCCccccCCCCccCc---EEEE-CcceeCcCcC--------eeCCCCCCCC
Confidence 4456899999988742 3333 6788999884 4888887764
No 142
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.04 E-value=4.2 Score=21.88 Aligned_cols=42 Identities=21% Similarity=0.411 Sum_probs=29.9
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
...|+.|-+.+...+.++ .. =+..||.+| ..|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a-~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EY-KGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-EC-SSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEE-EE-Ccccccccc--------CchhhCCCccCCC
Confidence 357999999887655543 33 577899888 4588888887653
No 143
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.70 E-value=3.5 Score=22.86 Aligned_cols=43 Identities=21% Similarity=0.581 Sum_probs=29.6
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
.....|+-|-+.+.+.+. +.. -+..||..|+ .|-.|..+|...
T Consensus 13 ~~~~~C~~C~~~I~~~~~--v~a-~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 13 PARETCVECQKTVYPMER--LLA-NQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SSSCBCTTTCCBCCTTSE--EEC-SSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCCCcCccCCCccCCcee--EEE-CCCEECCCCC--------eeCCCCCCCCCC
Confidence 345689999998875443 233 6788998884 477787777653
No 144
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=79.46 E-value=5.9 Score=21.77 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=30.5
Q ss_pred CCccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 40 LGISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
......|.-|-+.+.. . .+.. -+..||.+| ..|-.|..+|..
T Consensus 22 ~~~~~~C~~C~~~I~~--~-~~~a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVG--A-VVKA-RDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CCSCCBCTTTCCBCCS--C-CEES-SSCEECTTT--------CCCSSSCCCTTT
T ss_pred CCcCCCcccCCCEecc--c-EEEE-CCceECccC--------CEecCCCCCCCC
Confidence 3445679999998874 2 2333 678899988 458889888865
No 145
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=79.32 E-value=1.2 Score=24.57 Aligned_cols=48 Identities=23% Similarity=0.430 Sum_probs=29.2
Q ss_pred ccccccccccccccCCCeeEeC--CCCccccHhhHHHHHh---------CCCCCcccCCCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLP--TCHHGFHAHCIDAWLV---------LHSTCPLCRANV 91 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~Fh~~Ci~~wl~---------~~~~CP~Cr~~~ 91 (106)
....| ||......+ ..+... .|..=||..|+.---. .+-.||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 44567 898874332 333433 5888899999863211 134599997643
No 146
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.76 E-value=2.9 Score=22.35 Aligned_cols=40 Identities=23% Similarity=0.595 Sum_probs=27.0
Q ss_pred ccccccccccccc--CCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCC
Q 036238 43 SADCAVCLSKISS--AEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVP 92 (106)
Q Consensus 43 ~~~C~ICl~~~~~--~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 92 (106)
...|+.|-+.+.+ +... +.. -+..||.+|+ .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~-~~a-~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKF-ICF-QDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCE-EEE-TTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCcee-EEE-CCcccCcccC--------ChhhCCCcCC
Confidence 3478999888774 3333 332 6778999884 4777877775
No 147
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.18 E-value=2.5 Score=22.76 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=30.9
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHh----CCCCCcccCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLV----LHSTCPLCRAN 90 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~----~~~~CP~Cr~~ 90 (106)
.....| ||.....+++..+....|..=||..|+.--.. ..-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 334568 79887654444555556877899999764211 13459999654
No 148
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.05 E-value=3.9 Score=22.63 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=24.5
Q ss_pred CCcccccccccccccc-CCCeeEeCCCCccccHhhH
Q 036238 40 LGISADCAVCLSKISS-AEPLQVLPTCHHGFHAHCI 74 (106)
Q Consensus 40 ~~~~~~C~ICl~~~~~-~~~~~~l~~C~H~Fh~~Ci 74 (106)
...+..|+.|.+.|.. .......+.|.|..|.+|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 4556689999999862 2233455569998888873
No 149
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.00 E-value=3.8 Score=22.16 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=28.9
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
.....|+-|-+.+. ++. +.. -+..||..| ..|-.|+.+|...
T Consensus 13 ~~~~~C~~C~~~I~-~~~--v~a-~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQP--LIF-KNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCCCBCTTTCCBCC-SCC--CCC-SSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred cCCCCCccCCCEec-ceE--EEE-CcceeCCCC--------CEeCCCCCccCCC
Confidence 33557999999887 222 222 677899888 4588888887654
No 150
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=76.57 E-value=0.96 Score=25.37 Aligned_cols=32 Identities=28% Similarity=0.675 Sum_probs=20.9
Q ss_pred cccccccccc--CCCeeEeCCCCccccHhhHHHH
Q 036238 46 CAVCLSKISS--AEPLQVLPTCHHGFHAHCIDAW 77 (106)
Q Consensus 46 C~ICl~~~~~--~~~~~~l~~C~H~Fh~~Ci~~w 77 (106)
||=|-..+.. +...+..|.|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 7766554321 2233456569999999998887
No 151
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=76.44 E-value=1.4 Score=23.65 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=20.2
Q ss_pred cccccccccccccCCCeeEeCCCCccccH-hhHHHHHhCCCCCcccC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHA-HCIDAWLVLHSTCPLCR 88 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~-~Ci~~wl~~~~~CP~Cr 88 (106)
-..|..|...+... ... .. =|..||. .|..+- -...|-.|.
T Consensus 27 CF~C~~C~~~L~~~-~~~-~~-~g~~yC~~~cy~~~--f~~~C~~C~ 68 (76)
T 1iml_A 27 CLKCEKCGKTLTSG-GHA-EH-EGKPYCNHPCYSAM--FGPKGFGRG 68 (76)
T ss_dssp TCBCTTTCCBCCTT-TEE-EE-TTEEEETTTHHHHH--SSCCCSSCC
T ss_pred CCCccccCccCCCC-ceE-Cc-CCeEeeCHHHHHHH--hCccCCCcC
Confidence 34566666666543 221 21 3556666 465442 234465554
No 152
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=75.19 E-value=0.71 Score=24.15 Aligned_cols=43 Identities=26% Similarity=0.536 Sum_probs=26.2
Q ss_pred ccccccccccccccCCCeeEeCC--CC-ccccHhhHHHHHhCC----CCCcccCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLPT--CH-HGFHAHCIDAWLVLH----STCPLCRA 89 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~Fh~~Ci~~wl~~~----~~CP~Cr~ 89 (106)
+..-| ||.+... + ..+.... |. .-||..|+. +... -.||.|++
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34446 8987632 2 3334444 55 589999988 4432 24888864
No 153
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=75.16 E-value=0.65 Score=24.37 Aligned_cols=42 Identities=24% Similarity=0.555 Sum_probs=25.1
Q ss_pred cccccccccccccCCCeeEeCC--CC-ccccHhhHHHHHhC----CCCCcccCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPT--CH-HGFHAHCIDAWLVL----HSTCPLCRA 89 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~--C~-H~Fh~~Ci~~wl~~----~~~CP~Cr~ 89 (106)
..-| ||...-. + ..+.... |. .-||..|+. +.. +-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4446 8987632 2 3333344 44 579999988 443 224888854
No 154
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=74.70 E-value=1.3 Score=25.91 Aligned_cols=11 Identities=27% Similarity=0.999 Sum_probs=10.4
Q ss_pred ccHhhHHHHHh
Q 036238 69 FHAHCIDAWLV 79 (106)
Q Consensus 69 Fh~~Ci~~wl~ 79 (106)
||..|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 155
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=74.70 E-value=2 Score=26.96 Aligned_cols=48 Identities=17% Similarity=0.503 Sum_probs=31.9
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHH-----hCCCCCcccCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWL-----VLHSTCPLCRA 89 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl-----~~~~~CP~Cr~ 89 (106)
.+...| +|.....++...+....|..-||..|+.--. ...-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 445568 9998865444555555688889999985211 12446999975
No 156
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=74.64 E-value=1.3 Score=25.85 Aligned_cols=11 Identities=36% Similarity=1.201 Sum_probs=10.5
Q ss_pred ccHhhHHHHHh
Q 036238 69 FHAHCIDAWLV 79 (106)
Q Consensus 69 Fh~~Ci~~wl~ 79 (106)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 157
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.63 E-value=4.7 Score=20.94 Aligned_cols=39 Identities=26% Similarity=0.581 Sum_probs=26.0
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
...|+.|-+.+... .+.. -+..||.+| ..|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~---~~~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITTG---GVTY-REQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCSS---EEES-SSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCCcccCCeeccc---eEEE-CccccCCCC--------CccCCCCCcCCc
Confidence 34688888887632 2333 677888877 347788877754
No 158
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=73.92 E-value=0.57 Score=24.70 Aligned_cols=38 Identities=18% Similarity=0.461 Sum_probs=24.5
Q ss_pred cccccccccccccCCCeeE--eCC--CCccccHhhHHHHHhC
Q 036238 43 SADCAVCLSKISSAEPLQV--LPT--CHHGFHAHCIDAWLVL 80 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~--l~~--C~H~Fh~~Ci~~wl~~ 80 (106)
...||-|...++..+.-.. ... |++.|+..|...|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4578888888765442222 223 7788888888887654
No 159
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=72.30 E-value=3.5 Score=22.18 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=23.5
Q ss_pred CccccccccccccccCCCeeEeCCC-CccccHhhHHHHH
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTC-HHGFHAHCIDAWL 78 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C-~H~Fh~~Ci~~wl 78 (106)
++..-|.||.++ ..++-+. | |-.||..|.++--
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHHc
Confidence 344469999887 3455554 8 7899999988743
No 160
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.98 E-value=4.5 Score=21.08 Aligned_cols=40 Identities=23% Similarity=0.548 Sum_probs=26.3
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
...|.-|-+.+.+ +. +.. -+..||.+|+ .|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a-~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RV--IKA-MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CC--EEE-TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eE--EEE-CcccccccCC--------EeCCCCCcCCCC
Confidence 4568888888763 22 222 5677888874 577888777654
No 161
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=71.91 E-value=3.9 Score=21.20 Aligned_cols=43 Identities=26% Similarity=0.526 Sum_probs=30.4
Q ss_pred ccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
....|+-|.+.+...+.++. . =+..||..|+ .|-.|..++...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~-~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-S-NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-E-TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEE-e-CcCeeCcCCC--------cccCCCCCCCCC
Confidence 34579999998876554433 2 5678999885 588888887643
No 162
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=71.75 E-value=6 Score=22.13 Aligned_cols=46 Identities=15% Similarity=0.298 Sum_probs=28.5
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
-..|..|...+... ... .. =|..||..|..+ .....|..|.+++.+
T Consensus 33 CF~C~~C~~~L~~~-~~~-~~-~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 33 CFRCAKCLHPLANE-TFV-AK-DNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TCCCSSSCCCTTSS-CCE-EE-TTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred CCcccccCCCCCcC-eeE-Cc-CCEEEChhHhhh--hcCCccccCCCcccc
Confidence 34577887777432 222 22 466788777643 235679999888874
No 163
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=71.52 E-value=2.5 Score=30.27 Aligned_cols=50 Identities=20% Similarity=0.511 Sum_probs=31.5
Q ss_pred ccccccccccccccCCCeeEeCCCCcc--ccHhhHHHHHhCC--CCCcccCCCCCCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHG--FHAHCIDAWLVLH--STCPLCRANVPFC 94 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~--Fh~~Ci~~wl~~~--~~CP~Cr~~~~~~ 94 (106)
-...|+|=...+.. .++... |.|. |-..-+.....+. -.||+|.+.+...
T Consensus 248 vSL~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 248 MSLQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp EESBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred EeecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 34569988777754 345554 9998 5444444433333 3599999887543
No 164
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=71.49 E-value=2.6 Score=30.11 Aligned_cols=50 Identities=20% Similarity=0.422 Sum_probs=32.3
Q ss_pred ccccccccccccccCCCeeEeCCCCcc--ccHhhHHHHHhCC--CCCcccCCCCCCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHG--FHAHCIDAWLVLH--STCPLCRANVPFC 94 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~--Fh~~Ci~~wl~~~--~~CP~Cr~~~~~~ 94 (106)
-...|+|=...+.. .++... |.|. |-..=+.....+. -.||+|.+.+...
T Consensus 214 vSL~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 214 VSLMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp EESBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred EeeeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 34569988777753 345554 9998 5555444444433 3599999988653
No 165
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=70.97 E-value=4.4 Score=20.82 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=27.3
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
...|+.|-+.+. + . .+.. =+..||.+| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~-~-~-~~~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-G-R-VVNA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-S-C-EECC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-c-e-EEEE-CccccccCc--------CEECCCCCCCCC
Confidence 357899988886 3 2 2333 677899888 458888888764
No 166
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.65 E-value=4.9 Score=21.62 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=27.1
Q ss_pred ccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 44 ADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 44 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
..|+.|-+.+..++.++ .. =+..||..|+ .|-.|..+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSREL-FY-EDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBC-CC-SSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEE-Ee-CCccccccCC--------eecCCCCccCC
Confidence 47999998887433332 22 5678998883 47788887764
No 167
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.56 E-value=4.6 Score=20.95 Aligned_cols=39 Identities=26% Similarity=0.556 Sum_probs=25.9
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
...|+-|-+.+.. +. +.. =+..||.+|+ .|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a-~~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITS-GG--ITY-QDQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCT-TC--EEE-TTEEECTTTT--------BCTTTCCBCTT
T ss_pred cCCCcccCCEeCc-ce--EEE-CccccccCcC--------EECCCCCCCCC
Confidence 4578888888763 22 222 5678888774 47888887753
No 168
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=69.88 E-value=0.93 Score=32.41 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred ccccccccccccccCCCeeEeCCCCccccHhhHHHHH
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWL 78 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl 78 (106)
+...|.+|...|..-..-.....||++||..|....+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 3557999999886432223333599999999987654
No 169
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=69.21 E-value=1.8 Score=23.91 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=23.0
Q ss_pred cccccc--ccccccc--CCCeeEeC-----CCCccccHhhHHHHHh
Q 036238 43 SADCAV--CLSKISS--AEPLQVLP-----TCHHGFHAHCIDAWLV 79 (106)
Q Consensus 43 ~~~C~I--Cl~~~~~--~~~~~~l~-----~C~H~Fh~~Ci~~wl~ 79 (106)
..-||- |-..+.. +...+..+ .||+.||..|-..|=.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 334666 6554432 22334554 5999999999988833
No 170
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=68.97 E-value=1.2 Score=23.47 Aligned_cols=42 Identities=26% Similarity=0.605 Sum_probs=25.5
Q ss_pred cccccccccccccCCCeeEeCC--CC-ccccHhhHHHHHhC----CCCCcccCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPT--CH-HGFHAHCIDAWLVL----HSTCPLCRA 89 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~--C~-H~Fh~~Ci~~wl~~----~~~CP~Cr~ 89 (106)
..-| ||..... + ..+.... |. .-||..|+. +.. +-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-G-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-C-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 4456 8988632 2 2333344 44 689999987 333 235998865
No 171
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=68.79 E-value=4.4 Score=25.59 Aligned_cols=34 Identities=18% Similarity=0.498 Sum_probs=24.1
Q ss_pred cccccccccccccCCCeeEeC--CCCccccHhhHHHHHhC
Q 036238 43 SADCAVCLSKISSAEPLQVLP--TCHHGFHAHCIDAWLVL 80 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~--~C~H~Fh~~Ci~~wl~~ 80 (106)
+.-|.||-+. ..+.... .|...||..||...+..
T Consensus 79 ~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 79 QSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp BSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred cceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 4458888654 3444443 48899999999998864
No 172
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=67.37 E-value=2.6 Score=18.85 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=18.6
Q ss_pred ccccccccccccCCCeeEeCCCCccccHhhH
Q 036238 44 ADCAVCLSKISSAEPLQVLPTCHHGFHAHCI 74 (106)
Q Consensus 44 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci 74 (106)
..|+.|-..+-..+.+. . =|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--C-LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--S-SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--E-CCeEecccCC
Confidence 47888888765444443 2 5678888873
No 173
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=67.36 E-value=11 Score=19.79 Aligned_cols=42 Identities=24% Similarity=0.495 Sum_probs=29.5
Q ss_pred ccccccccccccc---CCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 43 SADCAVCLSKISS---AEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 43 ~~~C~ICl~~~~~---~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
...|+-|-+.+.+ .... +.. =+..||..| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~-~~a-~~~~~H~~C--------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSV-VAY-EGQSWHDYC--------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCE-EEE-TTEEEETTT--------CBCSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCcee-EEE-CcceeCccc--------CEehhcCCCCCCC
Confidence 3579999998874 2233 332 578899988 4588998888643
No 174
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=66.69 E-value=6.2 Score=20.30 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=28.1
Q ss_pred ccccccccccccCCCeeEeCCCCcccc--HhhHHHHHhCCCCCcccCCCCCCC
Q 036238 44 ADCAVCLSKISSAEPLQVLPTCHHGFH--AHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 44 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh--~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
..|+-|-+.+..++..+ .. -|..|| .+| ..|-.|+.++...
T Consensus 3 ~~C~~C~~~I~~~~~~v-~a-~~~~wH~~~~C--------F~C~~C~~~L~~~ 45 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRV-TY-NNFSWHASTEC--------FLCSCCSKCLIGQ 45 (65)
T ss_dssp EECTTTSSEECTTSCEE-EE-TTEEEETTTTT--------SBCTTTCCBCTTS
T ss_pred CCCcCCCCeeccCceEE-EE-CCCccCCCCCC--------EECCCCCCcCCCC
Confidence 36888888887543333 32 578899 888 4588888887643
No 175
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=66.46 E-value=1.9 Score=23.33 Aligned_cols=40 Identities=30% Similarity=0.604 Sum_probs=24.2
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
...|+.|-+.+.+++. +.. -+..||.+|+ .|-.|+.++..
T Consensus 7 ~~~C~~C~~~I~~~~~--~~a-~~~~~H~~CF--------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE--VQC-DGRSFHRCCF--------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTE--EEE-TTEEEESSSE--------ECSSSCCEECS
T ss_pred CCcCcCcCccccCcee--EEe-CCcccccccC--------ccCCCCCCCCC
Confidence 4568888887754442 222 5667777773 36677766654
No 176
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=66.12 E-value=2.2 Score=24.76 Aligned_cols=43 Identities=16% Similarity=0.491 Sum_probs=26.4
Q ss_pred ccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
.+..||+|..+++.... +.+|..|-.. +.....||-|.+++..
T Consensus 31 M~~~CP~Cq~eL~~~g~--------~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNG--------HARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCCBCSSSCSBEEEETT--------EEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred ccccCccCCCcceecCC--------EEECccccch-hhccccCcchhhHHHH
Confidence 34789999988764322 2334444332 3345669999988753
No 177
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=66.00 E-value=5.9 Score=28.55 Aligned_cols=33 Identities=24% Similarity=0.620 Sum_probs=24.1
Q ss_pred cccccccccccccCCCeeEeC--CCCccccHhhHHHHHh
Q 036238 43 SADCAVCLSKISSAEPLQVLP--TCHHGFHAHCIDAWLV 79 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~--~C~H~Fh~~Ci~~wl~ 79 (106)
+..|.+|-+. ..+.... .|...||..||...+.
T Consensus 93 ~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g 127 (386)
T 2pv0_B 93 QSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVG 127 (386)
T ss_dssp BCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTC
T ss_pred cccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcC
Confidence 4458887654 3445544 6899999999999984
No 178
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=65.76 E-value=4.3 Score=23.91 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=20.1
Q ss_pred ccccccccccccccCCCeeEeCCCCccccHhhHHHHHh
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLV 79 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~ 79 (106)
+-..|..|-..+..++.. ... =+..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f-~~~-~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRY-LLI-NSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEE-EEC-SSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcE-Eee-CCEEEcHHHhHHHhc
Confidence 345577777776433322 222 456677777766543
No 179
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=64.91 E-value=1.3 Score=19.80 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=7.1
Q ss_pred CCCcccCCCCC
Q 036238 82 STCPLCRANVP 92 (106)
Q Consensus 82 ~~CP~Cr~~~~ 92 (106)
.+||+|+...+
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 35777776554
No 180
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=62.57 E-value=11 Score=22.22 Aligned_cols=39 Identities=26% Similarity=0.523 Sum_probs=28.7
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVP 92 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 92 (106)
...|+-|-+.+.+.. .+.. -+..||..| ..|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~--~v~a-~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF--LLYA-MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSS--EEEE-TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcE--EEEe-CCcEEcccc--------cCcCcCCCccc
Confidence 457999999887432 2333 678899988 45899998885
No 181
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.31 E-value=16 Score=19.37 Aligned_cols=39 Identities=21% Similarity=0.505 Sum_probs=27.2
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
...|+.|-+.+.+. .+.. =+..||.+| ..|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~~~---~v~a-~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSKTLTQG---GVTY-RDQPWHREC--------LVCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCCCCCSC---CEES-SSSEECTTT--------CBCSSSCCBCTT
T ss_pred CCcCCCCCCEecCc---EEEE-CCchhhhhh--------CCcccCCCcCCC
Confidence 35799998887642 2333 678899888 358888888753
No 182
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.01 E-value=7.1 Score=20.95 Aligned_cols=41 Identities=22% Similarity=0.476 Sum_probs=29.0
Q ss_pred ccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
....|+-|-+.+.+ . .+.. -+..||..| .+|..|..+|...
T Consensus 14 ~~~~C~~C~~~I~~--~-~~~a-~~~~~H~~C--------F~C~~C~~~L~~~ 54 (81)
T 2dlo_A 14 TLEKCATCSQPILD--R-ILRA-MGKAYHPGC--------FTCVVCHRGLDGI 54 (81)
T ss_dssp SCCBCTTTCCBCCS--C-CEEE-TTEEECTTT--------CBCSSSCCBCTTS
T ss_pred CCCccccCCCeecc--e-eEEE-CCccccHHh--------cCcccCCCccCCC
Confidence 34579999988863 2 2333 678899988 4588998888644
No 183
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.37 E-value=7.5 Score=20.83 Aligned_cols=38 Identities=29% Similarity=0.644 Sum_probs=26.0
Q ss_pred ccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 44 ADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 44 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
..|+.|-+.+.. +. +.. -+..||..|+ .|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~-~~--v~a-~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EV--VSA-LGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCCS-CC--EEE-TTEEECTTTS--------SCSSSCCCCCS
T ss_pred CcCccccCEecc-ce--EEE-CCceeCccCC--------ccccCCCCCCC
Confidence 479999998873 22 232 6788998884 47777777653
No 184
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.19 E-value=11 Score=19.90 Aligned_cols=37 Identities=19% Similarity=0.526 Sum_probs=20.5
Q ss_pred ccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCC
Q 036238 44 ADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVP 92 (106)
Q Consensus 44 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 92 (106)
..|+-|-+.+.. + .+.. -+..||.+| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~-~--~v~a-~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-R--VLEA-GEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-C--CBCC-SSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-e--eEEe-CCCCCCCCc--------CEeCCCCCCCC
Confidence 357777666653 1 1222 556677766 33666666554
No 185
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=58.90 E-value=12 Score=23.63 Aligned_cols=27 Identities=33% Similarity=0.619 Sum_probs=12.4
Q ss_pred ccccccccccccCCCeeEeCCCCccccHhh
Q 036238 44 ADCAVCLSKISSAEPLQVLPTCHHGFHAHC 73 (106)
Q Consensus 44 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~C 73 (106)
..|..|-+.+..++.+. . -|..||..|
T Consensus 8 ~~C~~C~~~I~~~~~v~--a-~g~~wH~~C 34 (192)
T 1b8t_A 8 KKCGVCQKAVYFAEEVQ--C-EGSSFHKSC 34 (192)
T ss_dssp EECTTTCCEECSSCCEE--E-TTEEECTTT
T ss_pred CcCccCCCeecceeEEE--e-CCceecCCC
Confidence 35555555554333221 1 344555555
No 186
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.59 E-value=16 Score=19.29 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=27.9
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPFC 94 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 94 (106)
...|+.|-+.+.+ +.+ .. -+..||.+| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~-~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYL--SA-MDTVWHPEC--------FVCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCS-SCE--EE-TTEEECTTT--------CBCSSSCCBSCSS
T ss_pred CCccccCCCeecc-eeE--EE-CCCeEecCc--------CChhhCCCCCCCC
Confidence 3479999888874 222 32 567899888 4588898888653
No 187
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.50 E-value=11 Score=20.03 Aligned_cols=38 Identities=16% Similarity=0.412 Sum_probs=25.9
Q ss_pred ccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 44 ADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 44 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
..|+.|-+.+. +.. +.. -+..||.+| ..|-.|..+|..
T Consensus 16 ~~C~~C~~~I~-~~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPF--MVA-GEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCC--BCC-TTCCBCTTS--------CBCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceE--EEE-CCceecccc--------CCccCCCCccCC
Confidence 46888988877 222 222 577888877 448888888753
No 188
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=57.39 E-value=8.2 Score=19.83 Aligned_cols=29 Identities=10% Similarity=0.327 Sum_probs=17.1
Q ss_pred CccccccccccccccCCCeeEeC--CCCccc
Q 036238 41 GISADCAVCLSKISSAEPLQVLP--TCHHGF 69 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~F 69 (106)
-+-..|++|...+...+...+.+ .||+.|
T Consensus 8 L~iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 8 LEILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp TTSCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred HhheeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 34457899988766443333444 466655
No 189
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=56.60 E-value=12 Score=21.88 Aligned_cols=49 Identities=4% Similarity=-0.101 Sum_probs=33.5
Q ss_pred ccccccccccccc-CCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 43 SADCAVCLSKISS-AEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 43 ~~~C~ICl~~~~~-~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
-..|..|-..+.+ +... ... =|..||..|..+-+..+..|-.|..++..
T Consensus 32 CF~C~~C~~~L~~~~~~~-~~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSS-YTK-SGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECC-EEE-TTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeE-EEE-CCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 3468888888752 1122 222 56789999988866555589999998875
No 190
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=55.41 E-value=8.3 Score=20.53 Aligned_cols=47 Identities=21% Similarity=0.476 Sum_probs=28.9
Q ss_pred CccccccccccccccCCCeeEeCCCCccccHhhHHHHHh---CCCCCcccCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLV---LHSTCPLCRA 89 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~---~~~~CP~Cr~ 89 (106)
.+...| ||..... ++..+....|..=||..|+.--.. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344567 9987654 334445556888899999864221 1235888854
No 191
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=53.83 E-value=11 Score=22.07 Aligned_cols=48 Identities=8% Similarity=0.184 Sum_probs=22.6
Q ss_pred ccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCC
Q 036238 44 ADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVP 92 (106)
Q Consensus 44 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 92 (106)
..|..|...+.......... =|..||..|..+-+.....|..|..++.
T Consensus 30 F~C~~C~~~L~~~~~~~~~~-~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYK-LGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEE-TTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred cccCcCCCccccCCCeEEEE-CCEEeecCchhhhCCCccChhhcCCccC
Confidence 34666665554211111221 3455666665553332235666666554
No 192
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=53.01 E-value=6 Score=22.12 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=6.2
Q ss_pred ccccccccccc
Q 036238 44 ADCAVCLSKIS 54 (106)
Q Consensus 44 ~~C~ICl~~~~ 54 (106)
..|+.|..++.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 35666665554
No 193
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=52.74 E-value=9.5 Score=24.09 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=12.5
Q ss_pred cccccccccccCCCeeEeCCCCccccHhh
Q 036238 45 DCAVCLSKISSAEPLQVLPTCHHGFHAHC 73 (106)
Q Consensus 45 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~C 73 (106)
.|..|-+.+...+.++ .. -++.||..|
T Consensus 71 ~C~~C~~~I~~~e~~i-~a-~~~~~H~~C 97 (188)
T 1rut_X 71 ACSACGQSIPASELVM-RA-QGNVYHLKC 97 (188)
T ss_dssp ECTTTCCEECTTSEEE-EE-TTEEECGGG
T ss_pred ccccCCCccccCcEEE-Ec-CCCEEeCCC
Confidence 4555655554322221 11 455566655
No 194
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=50.50 E-value=2.6 Score=21.18 Aligned_cols=41 Identities=22% Similarity=0.513 Sum_probs=24.2
Q ss_pred ccccccccCCCeeEeCCCCccccHhhHHHHHh---CCCCCcccCC
Q 036238 48 VCLSKISSAEPLQVLPTCHHGFHAHCIDAWLV---LHSTCPLCRA 89 (106)
Q Consensus 48 ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~---~~~~CP~Cr~ 89 (106)
||..... +...+.-..|+.=||..|+.---. ..-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766543 334444445877899999763221 2335888864
No 195
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=50.49 E-value=8.8 Score=23.78 Aligned_cols=10 Identities=20% Similarity=0.737 Sum_probs=4.7
Q ss_pred cccccccccc
Q 036238 45 DCAVCLSKIS 54 (106)
Q Consensus 45 ~C~ICl~~~~ 54 (106)
.|..|...+.
T Consensus 35 ~C~~C~~~L~ 44 (169)
T 2rgt_A 35 KCSDCHVPLA 44 (169)
T ss_dssp BCTTTCCBCC
T ss_pred ccCCCCCcCC
Confidence 4455544443
No 196
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=49.97 E-value=18 Score=19.41 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=30.2
Q ss_pred cccccccccccccCCCeeEeCCCCccccHhhHHHHHh-----CCCCCcccCCC
Q 036238 43 SADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLV-----LHSTCPLCRAN 90 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~~ 90 (106)
...-.||...+..+...+....|.-=||..|+.---. ..-.||.|+..
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3344589877654444455556887899999864221 13459999754
No 197
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=47.25 E-value=11 Score=23.68 Aligned_cols=44 Identities=11% Similarity=0.257 Sum_probs=27.4
Q ss_pred ccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 44 ADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 44 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
..|..|...+... . . .. =|..||..|..+- -...|..|..++..
T Consensus 88 F~C~~C~~~L~~~-~-f-~~-~g~~yC~~~y~~~--f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 88 LKCSDCHVPLAER-C-F-SR-GESVYCKDDFFKR--FGTKCAACQLGIPP 131 (182)
T ss_dssp TSCTTTCCCCSSC-C-E-EE-TTEEECHHHHHHT--TSCCCTTTCCCCCS
T ss_pred CccCCCCCccCCC-c-e-eE-CCEeeecCccccc--cccccccCCCccCC
Confidence 4588888877643 2 2 22 4667777776542 24567778777764
No 198
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=46.60 E-value=19 Score=20.89 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=27.2
Q ss_pred ccccccccccccccCCCeeEeCCCCccccHhhHHHHHhCCCCCcccCCCCCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 93 (106)
+-..|..|...+... ..... =|..||..|..+- ....|+.|.+++..
T Consensus 29 ~CF~C~~C~~~L~~~--~f~~~-~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGE--IYVMV-NDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTS--EEEEE-TTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcC--EEEeE-CCEEechHHhCcC--cCccCcccCCcCCc
Confidence 345677777776532 12222 4566777776542 34567777777764
No 199
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=44.54 E-value=5.2 Score=24.86 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=15.8
Q ss_pred CCCCccccHhhHHHHHhCCCCCcccCCCCC
Q 036238 63 PTCHHGFHAHCIDAWLVLHSTCPLCRANVP 92 (106)
Q Consensus 63 ~~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 92 (106)
..|||.|-.. .....||.|-.++.
T Consensus 136 ~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 136 IGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp SSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred CCCCCcccCC------CCCCcCCCCCCcce
Confidence 3588888643 22347999988753
No 200
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.97 E-value=40 Score=19.24 Aligned_cols=35 Identities=9% Similarity=0.082 Sum_probs=16.2
Q ss_pred ccccccccccccc-CCCeeEeCCCCccccHhhHHHHHh
Q 036238 43 SADCAVCLSKISS-AEPLQVLPTCHHGFHAHCIDAWLV 79 (106)
Q Consensus 43 ~~~C~ICl~~~~~-~~~~~~l~~C~H~Fh~~Ci~~wl~ 79 (106)
-..|..|...+.. +... ... =|..||..|..+-+.
T Consensus 30 CF~C~~C~~~L~~~g~~~-~~~-~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 30 CLSCDLCGCRLGEVGRRL-YYK-LGRKLCRRDYLRLGG 65 (114)
T ss_dssp TCCCSSSCSCCCCSSSCC-CCB-TTBCCCHHHHHHHHT
T ss_pred cCcccccCCchhcCCCee-EEE-CCeeechHHHHHHhC
Confidence 3456666666542 1111 111 345566666555433
No 201
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=39.94 E-value=6.4 Score=21.22 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=12.0
Q ss_pred HHhCCCCCcccCCCCCC
Q 036238 77 WLVLHSTCPLCRANVPF 93 (106)
Q Consensus 77 wl~~~~~CP~Cr~~~~~ 93 (106)
|+..--.||.|+.++..
T Consensus 4 ~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 4 KLLDILACPICKGPLKL 20 (69)
T ss_dssp CGGGTCCCTTTCCCCEE
T ss_pred HHHhheeCCCCCCcCeE
Confidence 44445679999988764
No 202
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=37.50 E-value=5.8 Score=21.29 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=12.5
Q ss_pred HHHhCCCCCcccCCCCCC
Q 036238 76 AWLVLHSTCPLCRANVPF 93 (106)
Q Consensus 76 ~wl~~~~~CP~Cr~~~~~ 93 (106)
.|+..--.||.|+.++..
T Consensus 5 ~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp GGGTCCCBCTTTCCBCEE
T ss_pred HHHHHHhCCCCCCCcCeE
Confidence 345555679999988764
No 203
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=36.44 E-value=4.7 Score=22.19 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=1.6
Q ss_pred hCCCCCcccCCCCCCCCC
Q 036238 79 VLHSTCPLCRANVPFCSP 96 (106)
Q Consensus 79 ~~~~~CP~Cr~~~~~~~~ 96 (106)
..+..||.|+..+.....
T Consensus 6 ~r~k~C~fc~~~~~~iDY 23 (75)
T 3i1m_R 6 RRRKFCRFTAEGVQEIDY 23 (75)
T ss_dssp --------------CCST
T ss_pred CCCCCCCcccCCCCcCCc
Confidence 345678998876654433
No 204
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=35.97 E-value=22 Score=21.77 Aligned_cols=27 Identities=30% Similarity=0.610 Sum_probs=17.5
Q ss_pred cccccccccccccC-CCeeEeCCCCccc
Q 036238 43 SADCAVCLSKISSA-EPLQVLPTCHHGF 69 (106)
Q Consensus 43 ~~~C~ICl~~~~~~-~~~~~l~~C~H~F 69 (106)
-..||-|-.+|.-. ....+.|.|+|-+
T Consensus 27 lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCCCCCCcceEecCCeEECCcccccc
Confidence 45799999887632 2445566677754
No 205
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=33.85 E-value=13 Score=20.84 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=20.4
Q ss_pred cccccccccccccCCCeeEe--CCCCccccHhhHHHH
Q 036238 43 SADCAVCLSKISSAEPLQVL--PTCHHGFHAHCIDAW 77 (106)
Q Consensus 43 ~~~C~ICl~~~~~~~~~~~l--~~C~H~Fh~~Ci~~w 77 (106)
...|.||.+.= .+ ..+.. +.|.-.||..|...-
T Consensus 17 ~l~C~iC~~~~-~G-AciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQKG-VG-ASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBCC-SS-CEEECSCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCCC-Cc-EeEecCCCCCCCcCcHHHHHHC
Confidence 45799996541 01 11211 248889999998863
No 206
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=33.75 E-value=16 Score=20.62 Aligned_cols=43 Identities=21% Similarity=0.433 Sum_probs=25.5
Q ss_pred ccccccccccccccCCCeeEeCCCC---ccccHhhHHHHHhC----CCCCcc-cCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCH---HGFHAHCIDAWLVL----HSTCPL-CRA 89 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~---H~Fh~~Ci~~wl~~----~~~CP~-Cr~ 89 (106)
+..-| ||..... + ..+....|+ .-||..|+. +.. +-.||. |++
T Consensus 25 ~~~yC-iC~~~~~-g-~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-G-PMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-S-SEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-C-CEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34457 9987532 2 334444444 579999986 332 235999 864
No 207
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=32.02 E-value=15 Score=19.66 Aligned_cols=13 Identities=38% Similarity=1.014 Sum_probs=9.9
Q ss_pred CCCCcccCCCCCC
Q 036238 81 HSTCPLCRANVPF 93 (106)
Q Consensus 81 ~~~CP~Cr~~~~~ 93 (106)
--.||.|+.++..
T Consensus 8 iL~CP~ck~~L~~ 20 (68)
T 2hf1_A 8 ILVCPLCKGPLVF 20 (68)
T ss_dssp ECBCTTTCCBCEE
T ss_pred heECCCCCCcCeE
Confidence 3469999998764
No 208
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=31.97 E-value=36 Score=19.13 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=10.5
Q ss_pred Cccccccccccccc
Q 036238 41 GISADCAVCLSKIS 54 (106)
Q Consensus 41 ~~~~~C~ICl~~~~ 54 (106)
.....|.||+..|-
T Consensus 43 A~~i~C~VCr~tFm 56 (86)
T 1wvk_A 43 AMSIQCKVCMQTFI 56 (86)
T ss_dssp TCCEEETTTTEEEC
T ss_pred hhCCCChHhHhhHH
Confidence 44567999999764
No 209
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=31.66 E-value=27 Score=24.24 Aligned_cols=47 Identities=15% Similarity=0.288 Sum_probs=29.1
Q ss_pred CccccccccccccccCCCeeEeC---CCC--ccccHhhHHHHHhCCCCCcccCCC
Q 036238 41 GISADCAVCLSKISSAEPLQVLP---TCH--HGFHAHCIDAWLVLHSTCPLCRAN 90 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~---~C~--H~Fh~~Ci~~wl~~~~~CP~Cr~~ 90 (106)
.....|++|-..-... ++.. .=| +.+|.-|-..|--....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s---~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG---MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE---EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee---EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4566899997763211 1110 022 456667777777778889999764
No 210
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.24 E-value=11 Score=21.64 Aligned_cols=11 Identities=27% Similarity=1.032 Sum_probs=6.6
Q ss_pred CCCcccCCCCC
Q 036238 82 STCPLCRANVP 92 (106)
Q Consensus 82 ~~CP~Cr~~~~ 92 (106)
..||+|.+++.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 34777766554
No 211
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=31.16 E-value=37 Score=18.04 Aligned_cols=13 Identities=15% Similarity=0.233 Sum_probs=8.8
Q ss_pred ccccccccccccc
Q 036238 42 ISADCAVCLSKIS 54 (106)
Q Consensus 42 ~~~~C~ICl~~~~ 54 (106)
+-..|++|...+.
T Consensus 7 ~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 7 DILVCPVTKGRLE 19 (68)
T ss_dssp CCCBCSSSCCBCE
T ss_pred hheECCCCCCcCe
Confidence 4456888877664
No 212
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=30.21 E-value=34 Score=17.88 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=13.0
Q ss_pred CCCCcccCCCCCCCCCCC
Q 036238 81 HSTCPLCRANVPFCSPQR 98 (106)
Q Consensus 81 ~~~CP~Cr~~~~~~~~~~ 98 (106)
+..||.|-.+.....|.+
T Consensus 18 k~~CP~CG~~T~~~hPar 35 (60)
T 2apo_B 18 KEICPKCGEKTVIPKPPK 35 (60)
T ss_dssp SSBCSSSCSBCBCCCCCC
T ss_pred cccCcCCCCcCCCCCCCC
Confidence 567999988776665544
No 213
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=29.94 E-value=2.4 Score=17.92 Aligned_cols=12 Identities=42% Similarity=0.897 Sum_probs=8.3
Q ss_pred cccHhhHHHHHh
Q 036238 68 GFHAHCIDAWLV 79 (106)
Q Consensus 68 ~Fh~~Ci~~wl~ 79 (106)
.||..|-..|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 477777777764
No 214
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=29.93 E-value=55 Score=17.47 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=9.3
Q ss_pred Cccccccccccccc
Q 036238 41 GISADCAVCLSKIS 54 (106)
Q Consensus 41 ~~~~~C~ICl~~~~ 54 (106)
-+-..|++|...+.
T Consensus 6 L~iL~CP~ck~~L~ 19 (70)
T 2js4_A 6 LDILVCPVCKGRLE 19 (70)
T ss_dssp CCCCBCTTTCCBEE
T ss_pred hhheECCCCCCcCE
Confidence 34456888887765
No 215
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Probab=28.32 E-value=11 Score=21.25 Aligned_cols=12 Identities=0% Similarity=-0.050 Sum_probs=6.9
Q ss_pred CCCCcccCCCCC
Q 036238 81 HSTCPLCRANVP 92 (106)
Q Consensus 81 ~~~CP~Cr~~~~ 92 (106)
+..||.|+..+.
T Consensus 19 ~k~C~~c~~~~~ 30 (88)
T 2vqe_R 19 KAKVKATLGEFD 30 (88)
T ss_dssp SCCTTTSCCCEE
T ss_pred CCCCCccCCCCC
Confidence 445777765543
No 216
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=27.64 E-value=56 Score=22.91 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=25.1
Q ss_pred Cccccccccccccc-cCCCeeEeCCCCccccHhhHHH
Q 036238 41 GISADCAVCLSKIS-SAEPLQVLPTCHHGFHAHCIDA 76 (106)
Q Consensus 41 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~Fh~~Ci~~ 76 (106)
.....|..|...+. -...-.....||.++|..|...
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 45567999998874 2223334446999999999764
No 217
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=27.07 E-value=26 Score=20.23 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=25.4
Q ss_pred ccccccccccCCCeeEeCCCCccccHhhHHHHHhC--------CCCCcccCCC
Q 036238 46 CAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL--------HSTCPLCRAN 90 (106)
Q Consensus 46 C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~--------~~~CP~Cr~~ 90 (106)
|..|......+...+....|+..||..|....... .-.||.|+..
T Consensus 62 c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 62 VDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp BCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred ccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 44444333333345555679999999997643221 1249999753
No 218
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=26.93 E-value=12 Score=16.17 Aligned_cols=9 Identities=33% Similarity=1.224 Sum_probs=5.3
Q ss_pred CCcccCCCC
Q 036238 83 TCPLCRANV 91 (106)
Q Consensus 83 ~CP~Cr~~~ 91 (106)
.||+|.+..
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 477776543
No 219
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=26.87 E-value=43 Score=21.57 Aligned_cols=9 Identities=33% Similarity=1.073 Sum_probs=6.4
Q ss_pred CCCcccCCC
Q 036238 82 STCPLCRAN 90 (106)
Q Consensus 82 ~~CP~Cr~~ 90 (106)
..||+|..+
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 478888664
No 220
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.65 E-value=78 Score=16.70 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=18.7
Q ss_pred CccccccccccccccCCCeeEeCCCCccccH
Q 036238 41 GISADCAVCLSKISSAEPLQVLPTCHHGFHA 71 (106)
Q Consensus 41 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~ 71 (106)
.....|..|...+.-. ..... ||..||.
T Consensus 13 ~~~~rC~~C~kkvgl~--~f~Cr-Cg~~FC~ 40 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVM--GFKCK-CGSTFCG 40 (64)
T ss_dssp CCSCSCTTTCCCCTTS--CEECT-TSCEECS
T ss_pred CcCCcChhhCCccccc--CeEee-cCCEecc
Confidence 3445799998875421 24454 9999986
No 221
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=25.90 E-value=73 Score=16.62 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=9.3
Q ss_pred Cccccccccccc
Q 036238 41 GISADCAVCLSK 52 (106)
Q Consensus 41 ~~~~~C~ICl~~ 52 (106)
.+...|.||+..
T Consensus 7 ~d~~~C~iC~KT 18 (62)
T 2a20_A 7 GDAPTCGICHKT 18 (62)
T ss_dssp SCCCCCSSSSCS
T ss_pred CCcchhhhhccc
Confidence 456689999875
No 222
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=24.51 E-value=17 Score=19.60 Aligned_cols=11 Identities=36% Similarity=0.893 Sum_probs=8.7
Q ss_pred CCCcccCCCCC
Q 036238 82 STCPLCRANVP 92 (106)
Q Consensus 82 ~~CP~Cr~~~~ 92 (106)
..||+|.+++.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 35999998875
No 223
>2ll1_A U1-TRTX-SP1A; toxin; NMR {Theraphosidae}
Probab=23.46 E-value=17 Score=16.03 Aligned_cols=8 Identities=50% Similarity=1.423 Sum_probs=4.4
Q ss_pred CCccccHhh
Q 036238 65 CHHGFHAHC 73 (106)
Q Consensus 65 C~H~Fh~~C 73 (106)
||| .|..|
T Consensus 2 cgh-lhdpc 9 (33)
T 2ll1_A 2 CGH-LHDPC 9 (33)
T ss_dssp CBC-SSCBC
T ss_pred Ccc-cCCCC
Confidence 676 45444
No 224
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=23.25 E-value=62 Score=23.91 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=28.7
Q ss_pred cccccccccccCCCeeEeCCCCccccHhhHHHHHhC-----CCCCcccCC
Q 036238 45 DCAVCLSKISSAEPLQVLPTCHHGFHAHCIDAWLVL-----HSTCPLCRA 89 (106)
Q Consensus 45 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~ 89 (106)
.| ||......+...+....|.-=||..|+.---.. +-.||.|+.
T Consensus 39 yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 39 YC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp ET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred EE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 35 998876544455555568878999998532211 235999974
No 225
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=22.99 E-value=35 Score=17.79 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=25.4
Q ss_pred ccccccccccccccCCCeeEeC--CCCccccHhhHHHHH---h-----CCCCCcccCC
Q 036238 42 ISADCAVCLSKISSAEPLQVLP--TCHHGFHAHCIDAWL---V-----LHSTCPLCRA 89 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~Fh~~Ci~~wl---~-----~~~~CP~Cr~ 89 (106)
+...| ||......+ ..+... .|..=||..|+.--- . .+-.||.||.
T Consensus 9 ~~v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34456 797654433 333332 277679999974210 0 1235999863
No 226
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=22.48 E-value=48 Score=16.46 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=7.0
Q ss_pred CCCcccCCCCC
Q 036238 82 STCPLCRANVP 92 (106)
Q Consensus 82 ~~CP~Cr~~~~ 92 (106)
-.||.|--.+-
T Consensus 24 IrCpyCGyrii 34 (48)
T 4ayb_P 24 VRCPYCGYKII 34 (48)
T ss_dssp SCCTTTCCSCE
T ss_pred cccCccCcEEE
Confidence 45888865543
No 227
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=21.14 E-value=1.1e+02 Score=16.57 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=18.2
Q ss_pred ccccccccccccccCCCeeEeCCCCccccH
Q 036238 42 ISADCAVCLSKISSAEPLQVLPTCHHGFHA 71 (106)
Q Consensus 42 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~ 71 (106)
....|..|...+.. ...... ||..||.
T Consensus 24 ~~nRC~~CrKkvgL--~gf~Cr-Cg~~FCs 50 (74)
T 1wfl_A 24 KKNRCFMCRKKVGL--TGFDCR-CGNLFCG 50 (74)
T ss_dssp CTTBCSSSCCBCGG--GCEECT-TSCEECS
T ss_pred cCCcChhhCCcccc--cCeecC-CCCEech
Confidence 34579999887542 124555 9999986
No 228
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=20.60 E-value=63 Score=20.24 Aligned_cols=15 Identities=13% Similarity=0.503 Sum_probs=11.5
Q ss_pred hCCCCCcccCCCCCC
Q 036238 79 VLHSTCPLCRANVPF 93 (106)
Q Consensus 79 ~~~~~CP~Cr~~~~~ 93 (106)
.+...||+|..++..
T Consensus 18 ~Q~g~C~IC~~~l~~ 32 (157)
T 1e7l_A 18 AQNGKCLICQRELNP 32 (157)
T ss_dssp HTTTBCTTTCCBCCS
T ss_pred HhCCcCcccCCcccc
Confidence 367789999998654
Done!