BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036240
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 164 bits (415), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 1 MGKTSLPPGFRFHPTDVELIKYYLKRKVMGRKFGFEAIAEVDIYKHAPWDLPDKSSLRSG 60
+ + SLPPGFRF+PTD EL+ YL RK G F + IAE+D+YK PW LP+K+ G
Sbjct: 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF--G 69
Query: 61 DLKWYFFCPREKKYANGARMNRATEFGYWKTTGKDRPVQYNNEVVGMIKTLVFHRGKAPR 120
+ +WYFF PR++KY NG+R NR GYWK TG D+ + + VG+ K LVF+ GKAP+
Sbjct: 70 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 129
Query: 121 GDRTDWVMHEYRIDEPGLSERGVVQDAYVLCIVFQKD 157
G +T+W+MHEYR+ EP D +VLC +++K
Sbjct: 130 GTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 164 bits (415), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 1 MGKTSLPPGFRFHPTDVELIKYYLKRKVMGRKFGFEAIAEVDIYKHAPWDLPDKSSLRSG 60
+ + SLPPGFRF+PTD EL+ YL RK G F + IAE+D+YK PW LP+K+ G
Sbjct: 15 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF--G 72
Query: 61 DLKWYFFCPREKKYANGARMNRATEFGYWKTTGKDRPVQYNNEVVGMIKTLVFHRGKAPR 120
+ +WYFF PR++KY NG+R NR GYWK TG D+ + + VG+ K LVF+ GKAP+
Sbjct: 73 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 132
Query: 121 GDRTDWVMHEYRIDEPGLSERGVVQDAYVLCIVFQKD 157
G +T+W+MHEYR+ EP D +VLC +++K
Sbjct: 133 GTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 169
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 106/160 (66%), Gaps = 7/160 (4%)
Query: 2 GKTSLPPGFRFHPTDVELIKYYLKRKVMGRKFGFEAIAEVDIYKHAPWDLPDKSSLRSGD 61
+ +LPPGFRFHPTD EL+++YL RK G++ IAEVD+YK PWDLP+++ G
Sbjct: 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF--GA 68
Query: 62 LKWYFFCPREKKYANGARMNRATEFGYWKTTGKDRPVQYNNEVVGMIKTLVFHRGKAPRG 121
+WYFF PR++KY NG+R NRA GYWK TG D+PV +G+ K LVF+ GKAPRG
Sbjct: 69 REWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG 128
Query: 122 DRTDWVMHEYRI-----DEPGLSERGVVQDAYVLCIVFQK 156
+TDW+MHEYR+ G + + D +VLC ++ K
Sbjct: 129 VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168
>pdb|2XSR|A Chain A, Crystal Structure Of Wild Type Acinetobacter
Radioresistens Catechol 1,2 Dioxygenase
Length = 312
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 313 SGGEYDFFPAENSNYNLDGAILGD-NASFIELHDLDAPLNCPAE 355
S G Y FF S++NL IL D N ++ L + CP E
Sbjct: 163 SLGNYSFFDKSQSDFNLRRTILTDVNGKYVALTTMPVGYGCPPE 206
>pdb|2XSV|A Chain A, Crystal Structure Of Wild Type Acinetobacter
Radioresistens Catechol 1,2 Dioxygenase
Length = 312
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 313 SGGEYDFFPAENSNYNLDGAILGD-NASFIELHDLDAPLNCPAE 355
S G Y FF S++NL IL D N ++ L + CP E
Sbjct: 163 SLGNYSFFDKSQSDFNLRRTILTDVNGKYVALTTMPVGYGCPPE 206
>pdb|2XSU|A Chain A, Crystal Structure Of The A72g Mutant Of Acinetobacter
Radioresistens Catechol 1,2 Dioxygenase
Length = 312
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 313 SGGEYDFFPAENSNYNLDGAILGD-NASFIELHDLDAPLNCPAE 355
S G Y FF S++NL IL D N ++ L + CP E
Sbjct: 163 SLGNYSFFDKSQSDFNLRRTILTDVNGKYVALTTMPVGYGCPPE 206
>pdb|3VNP|A Chain A, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
pdb|3VNP|B Chain B, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
pdb|3VNP|C Chain C, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
Length = 183
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 183 DCVDVISSAVLPPPVPSQNSPVAESSHIPERLCIGTSESCLSDTIPPTSNMLPPVPVIND 242
D V V +L + +N+ + S I +R IG + ++ P +PP +
Sbjct: 76 DGVTVGHQVILHSAIVRKNALIGMGSIILDRAEIGEGAFIGAGSLVPPGKKIPPNTLALG 135
Query: 243 VSREVAQDLSEDDILAM 259
+V ++L+EDDI M
Sbjct: 136 RPAKVVRELTEDDIREM 152
>pdb|3HTL|X Chain X, Structure Of The Corynebacterium Diphtheriae Major Pilin
Spaa Points To A Modular Pilus Assembly With
Stabilizing Isopeptide Bonds
Length = 436
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 27 KVMGRKFGFEAIAEVDIYKHAPWDLPDKSSLRSGDLKWYFFCPREKKYANGARMNRATEF 86
KV G F + E+D+ A WD K L E+ Y NG ++ T+
Sbjct: 33 KVDGXSFTLYRVNEIDLTTQAGWDAASKIKL-------------EELYTNGHPTDKVTKV 79
Query: 87 GYWKTTG 93
KT G
Sbjct: 80 ATKKTEG 86
>pdb|3HR6|A Chain A, Structure Of The Corynebacterium Diphtheriae Major Pilin
Spaa Points To A Modular Pilus Assembly Stabilizing
Isopeptide Bonds
Length = 436
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 27 KVMGRKFGFEAIAEVDIYKHAPWDLPDKSSLRSGDLKWYFFCPREKKYANGARMNRATEF 86
KV G F + E+D+ A WD K L E+ Y NG ++ T+
Sbjct: 33 KVDGMSFTLYRVNEIDLTTQAGWDAASKIKL-------------EELYTNGHPTDKVTKV 79
Query: 87 GYWKTTG 93
KT G
Sbjct: 80 ATKKTEG 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,619,409
Number of Sequences: 62578
Number of extensions: 670310
Number of successful extensions: 997
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 11
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)