Query 036240
Match_columns 434
No_of_seqs 181 out of 968
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 18:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.4E-54 4.7E-59 400.4 14.2 152 5-158 14-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.4E-54 4.9E-59 399.2 12.3 154 4-159 15-168 (171)
3 1ldd_A APC2WHB, anaphase promo 16.8 71 0.0024 25.3 2.3 28 6-34 36-64 (74)
4 2oh5_A Polyhedrin, C-polyhedri 13.1 1.1E+02 0.0039 28.0 2.9 28 86-113 140-168 (248)
5 1sg7_A Putative cation transpo 9.4 1.2E+02 0.004 25.3 1.5 21 382-403 15-37 (96)
6 3nr5_A MAF1, repressor of RNA 6.5 1.2E+02 0.004 27.5 0.3 14 37-50 118-131 (164)
7 3cpr_A Dihydrodipicolinate syn 6.2 1.9E+02 0.0065 27.7 1.6 19 6-25 118-136 (304)
8 2h1z_A Hybrid atracotoxin; bet 6.2 1.9E+02 0.0066 20.2 1.2 16 373-388 3-19 (39)
9 3dz1_A Dihydrodipicolinate syn 6.2 2.2E+02 0.0074 27.5 2.0 18 6-25 109-126 (313)
10 4dox_A Coat protein; all helix 6.2 2.8E+02 0.0096 26.3 2.7 18 9-26 158-175 (226)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.4e-54 Score=400.42 Aligned_cols=152 Identities=52% Similarity=1.030 Sum_probs=133.5
Q ss_pred CCCCCceeCCChHHHHHHHHHHHHcCCCCCCCCeEeccCCCCCCCCCCcccccCCCCceEEEeccccccccCCCcccccc
Q 036240 5 SLPPGFRFHPTDVELIKYYLKRKVMGRKFGFEAIAEVDIYKHAPWDLPDKSSLRSGDLKWYFFCPREKKYANGARMNRAT 84 (434)
Q Consensus 5 ~LPpGfRF~PTDEELV~~YL~rKv~G~plp~~~I~evDVY~~ePWdLP~~~~~~~ge~eWYFFs~r~rKy~~G~R~~Rat 84 (434)
.|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+. .++.+|||||++++||++|.|++|+|
T Consensus 14 ~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~--~g~~ewYFFs~r~~ky~~g~R~nR~t 91 (174)
T 3ulx_A 14 NLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERAL--FGAREWYFFTPRDRKYPNGSRPNRAA 91 (174)
T ss_dssp TCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCS--SCSSEEEEEEECCC-----CCSCEEE
T ss_pred CCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhc--cCCceEEEEeccccccCCCCCceeec
Confidence 4999999999999999999999999999999999999999999999999874 46789999999999999999999999
Q ss_pred ccceeeecCCCceeecCCeeEEEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCcc-----CCCCCCcEEEEEEEEeCC
Q 036240 85 EFGYWKTTGKDRPVQYNNEVVGMIKTLVFHRGKAPRGDRTDWVMHEYRIDEPGLSE-----RGVVQDAYVLCIVFQKDG 158 (434)
Q Consensus 85 ggGyWK~tGkdk~I~~~G~vVG~KKtLvFy~Gk~p~g~KT~WvMhEYrL~~~~~~~-----~~~~~dd~VLCRIf~K~~ 158 (434)
++||||+||+++.|..+|++||+||+|+||.|++|++.||+|+||||+|....... .....++|||||||+|++
T Consensus 92 ~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 92 GNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp TTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESCC
T ss_pred CCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcCC
Confidence 99999999999999988999999999999999999999999999999998865432 113468999999999964
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.4e-54 Score=399.24 Aligned_cols=154 Identities=49% Similarity=0.969 Sum_probs=130.6
Q ss_pred CCCCCCceeCCChHHHHHHHHHHHHcCCCCCCCCeEeccCCCCCCCCCCcccccCCCCceEEEeccccccccCCCccccc
Q 036240 4 TSLPPGFRFHPTDVELIKYYLKRKVMGRKFGFEAIAEVDIYKHAPWDLPDKSSLRSGDLKWYFFCPREKKYANGARMNRA 83 (434)
Q Consensus 4 ~~LPpGfRF~PTDEELV~~YL~rKv~G~plp~~~I~evDVY~~ePWdLP~~~~~~~ge~eWYFFs~r~rKy~~G~R~~Ra 83 (434)
..|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+ ..++.+|||||++++||++|.|++|+
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~--~~g~~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA--LFGEKEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHS--SSCSSEEEEEEECCC-------CCEE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchh--hcCCccEEEEeccccccCCCCccccc
Confidence 3499999999999999999999999999999999999999999999999987 35678999999999999999999999
Q ss_pred cccceeeecCCCceeecCCeeEEEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCccCCCCCCcEEEEEEEEeCCC
Q 036240 84 TEFGYWKTTGKDRPVQYNNEVVGMIKTLVFHRGKAPRGDRTDWVMHEYRIDEPGLSERGVVQDAYVLCIVFQKDGP 159 (434)
Q Consensus 84 tggGyWK~tGkdk~I~~~G~vVG~KKtLvFy~Gk~p~g~KT~WvMhEYrL~~~~~~~~~~~~dd~VLCRIf~K~~~ 159 (434)
|++||||+||+++.|..++.+||+||+|+||.|++|++.||+|+||||+|...........+++|||||||+|+..
T Consensus 93 t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 93 AGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp ETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred CCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 9999999999999999989999999999999999999999999999999987653222235689999999999754
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=16.81 E-value=71 Score=25.25 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=23.2
Q ss_pred CCCCceeCC-ChHHHHHHHHHHHHcCCCCC
Q 036240 6 LPPGFRFHP-TDVELIKYYLKRKVMGRKFG 34 (434)
Q Consensus 6 LPpGfRF~P-TDEELV~~YL~rKv~G~plp 34 (434)
.|.|+.|.. |.+||-. ||-+|+....+.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 467999998 8888888 799999987664
No 4
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=13.12 E-value=1.1e+02 Score=27.98 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=22.9
Q ss_pred cceeeecC-CCceeecCCeeEEEEEEEEe
Q 036240 86 FGYWKTTG-KDRPVQYNNEVVGMIKTLVF 113 (434)
Q Consensus 86 gGyWK~tG-kdk~I~~~G~vVG~KKtLvF 113 (434)
.--|.+|| +-|.|..+|++||+...|..
T Consensus 140 shpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeeecceEeeeeeeeec
Confidence 45799998 55888889999999988764
No 5
>1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.239.1.1
Probab=9.43 E-value=1.2e+02 Score=25.33 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=10.3
Q ss_pred ccCcccc--cCCCCCChhhhhccC
Q 036240 382 NVNPCFS--QSPSMLPQDSVRRNA 403 (434)
Q Consensus 382 ~~~~~~~--~~~~~~~~~~~~~~~ 403 (434)
-+|||.| ++.+.||. +||++.
T Consensus 15 ~~~~~~MpY~s~~dLP~-sVr~~L 37 (96)
T 1sg7_A 15 GFNPRGSPYKTKSDLPE-SVKHVL 37 (96)
T ss_dssp -------CCSSSTTSCH-HHHTTC
T ss_pred CCCCCccCCCChhhCCH-HHHHhC
Confidence 3689988 67889985 677643
No 6
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=6.52 E-value=1.2e+02 Score=27.48 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=11.2
Q ss_pred CeEeccCCCCCCCC
Q 036240 37 AIAEVDIYKHAPWD 50 (434)
Q Consensus 37 ~I~evDVY~~ePWd 50 (434)
-+.++|||.+.|-.
T Consensus 118 ~l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 118 CLAECDIYSYNPDL 131 (164)
T ss_dssp CGGGCEEEEECCCG
T ss_pred CccCCeEEEEcCCC
Confidence 36678999999983
No 7
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=6.25 E-value=1.9e+02 Score=27.74 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=14.9
Q ss_pred CCCCceeCCChHHHHHHHHH
Q 036240 6 LPPGFRFHPTDVELIKYYLK 25 (434)
Q Consensus 6 LPpGfRF~PTDEELV~~YL~ 25 (434)
+|| |.|.||+++|+.||-.
T Consensus 118 ~~P-~y~~~~~~~l~~~f~~ 136 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFGA 136 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHHH
Confidence 566 5588999999998743
No 8
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=6.21 E-value=1.9e+02 Score=20.21 Aligned_cols=16 Identities=38% Similarity=1.022 Sum_probs=11.7
Q ss_pred cccccCCc-cccCcccc
Q 036240 373 CYNSEQSC-YNVNPCFS 388 (434)
Q Consensus 373 ~~~~~~~~-~~~~~~~~ 388 (434)
|.-++|-| ||-+||-+
T Consensus 3 CipsgQPCpyN~~pCCs 19 (39)
T 2h1z_A 3 CVPVDQPCSLNTQPCCD 19 (39)
T ss_dssp CBCTTSBCCTTSCCBST
T ss_pred cccCCCCCCCCcccccC
Confidence 56666665 88888877
No 9
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=6.20 E-value=2.2e+02 Score=27.46 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=13.8
Q ss_pred CCCCceeCCChHHHHHHHHH
Q 036240 6 LPPGFRFHPTDVELIKYYLK 25 (434)
Q Consensus 6 LPpGfRF~PTDEELV~~YL~ 25 (434)
+||- |.||+++|+.||-.
T Consensus 109 ~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp CCCT--TCCSHHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHHH
Confidence 5664 56999999998744
No 10
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=6.18 E-value=2.8e+02 Score=26.26 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=14.7
Q ss_pred CceeCCChHHHHHHHHHH
Q 036240 9 GFRFHPTDVELIKYYLKR 26 (434)
Q Consensus 9 GfRF~PTDEELV~~YL~r 26 (434)
|..+.||++|+|.|=..+
T Consensus 158 GLiR~PT~~E~iA~~t~K 175 (226)
T 4dox_A 158 GLTRSPTQEERIANATNK 175 (226)
T ss_dssp CCSSCCCHHHHHHHHTC-
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 899999999999984333
Done!