BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036241
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 238 bits (608), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 129/298 (43%), Positives = 180/298 (60%), Gaps = 5/298 (1%)
Query: 58 DLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKA 117
DLDW NLGF + Y + K + G+L+ A + +S S+ L+YGQ +EG KA
Sbjct: 8 DLDWKNLGFEYHKLPFRY-ISYYKDGKWDDGKLTEDATLHISESSPALHYGQEAFEGLKA 66
Query: 118 YRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKG-T 176
YRT+DG + LFRP++NA R++ A+R+ MP D+F+DA KQ+ AN+ +VPP G G T
Sbjct: 67 YRTKDGSVQLFRPNMNAERLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGAT 126
Query: 177 LYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSAPLNLYIEEEFVRAAPGGAGG 236
LY+RPLLIG G V+G+ PA EY F +A PVGNYFK G AP N I++++ RAAP G G
Sbjct: 127 LYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGA 186
Query: 237 VKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIF-VVKGNVISTPATNG 295
K NYA L A R FSDV+YLD +EEV S N F + K N TP +
Sbjct: 187 AKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITPLSP- 245
Query: 296 TILEGITRRSVIEIARD-YGYQVEERVIPVDELINADQVFCTGTAVVVAPVGSITYQN 352
+IL +T+ S++ +A +G + E + VDEL + GTA V++P+G + + +
Sbjct: 246 SILPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGD 303
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 224 bits (571), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 185/309 (59%), Gaps = 11/309 (3%)
Query: 63 NLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTED 122
N GF D+M ++ + E + Q+ Y I+L PSA VL+YGQ ++EG KAYR D
Sbjct: 32 NPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWAD 91
Query: 123 GRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPG-KGTLYIRP 181
G I+ FRP+ NA+R++ A R+ +P + F+++++Q+ +++WVPP G + +LY+RP
Sbjct: 92 GSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRP 151
Query: 182 LLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSAPLNLYIEEEFVRAAPGGAGGVKAIS 241
+I + P LG+ P+ EY +L ASP G YFK G P+++++ E+VRA+PGG G K
Sbjct: 152 FVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGG 211
Query: 242 NYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGN----VISTPATNGTI 297
NYA L A +A G V++LD++ R+ VEE+ N+F V G+ + TP +G++
Sbjct: 212 NYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSL 271
Query: 298 LEGITRRSVIEIARDYGYQVEERVIPVDELINA------DQVFCTGTAVVVAPVGSITYQ 351
L GITR S++++A D G+ VEER I VDE +VF GTA V+ PV + +
Sbjct: 272 LPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHH 331
Query: 352 NKRVEFKTG 360
+ G
Sbjct: 332 DGEFTIADG 340
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 224 bits (571), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 185/309 (59%), Gaps = 11/309 (3%)
Query: 63 NLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTED 122
N GF D+M ++ + E + Q+ Y I+L PSA VL+YGQ ++EG KAYR D
Sbjct: 33 NPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWAD 92
Query: 123 GRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPG-KGTLYIRP 181
G I+ FRP+ NA+R++ A R+ +P + F+++++Q+ +++WVPP G + +LY+RP
Sbjct: 93 GSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRP 152
Query: 182 LLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSAPLNLYIEEEFVRAAPGGAGGVKAIS 241
+I + P LG+ P+ EY +L ASP G YFK G P+++++ E+VRA+PGG G K
Sbjct: 153 FVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGG 212
Query: 242 NYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGN----VISTPATNGTI 297
NYA L A +A G V++LD++ R+ VEE+ N+F V G+ + TP +G++
Sbjct: 213 NYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSL 272
Query: 298 LEGITRRSVIEIARDYGYQVEERVIPVDELINA------DQVFCTGTAVVVAPVGSITYQ 351
L GITR S++++A D G+ VEER I VDE +VF GTA V+ PV + +
Sbjct: 273 LPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHH 332
Query: 352 NKRVEFKTG 360
+ G
Sbjct: 333 DGEFTIADG 341
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 174/297 (58%), Gaps = 11/297 (3%)
Query: 65 GFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGR 124
GF D+M ++ ++ + ++ Y IEL PSA VL+Y Q V+EG KAYR DG
Sbjct: 30 GFGKYHTDHMVSIDYAEGRGWHNARVIPYGPIELDPSAIVLHYAQEVFEGLKAYRWADGS 89
Query: 125 ILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPG-KGTLYIRPLL 183
I+ FR D NA+R++ A R+ +P F+++++Q+ +K WVP G + LY+RP +
Sbjct: 90 IVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRPFI 149
Query: 184 IGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSAPLNLYIEEEFVRAAPGGAGGVKAISNY 243
+ P LG+ PA +Y +L ASP G YFK G AP+++++ E+VRA PGG G K NY
Sbjct: 150 FATEPGLGVRPATQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACPGGTGAAKFGGNY 209
Query: 244 APVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGN----VISTPATNGTILE 299
A L A A G V++LD+V R+ +EE+ NIF V G+ + TP +G++L
Sbjct: 210 AASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLVTPELSGSLLP 269
Query: 300 GITRRSVIEIARDYGYQVEERVIPVDELINA------DQVFCTGTAVVVAPVGSITY 350
GITR S++++A D G+ VEER I +DE +VF GTA V+ PV + +
Sbjct: 270 GITRDSLLQLAIDAGFAVEERRIDIDEWQKKAAAGEITEVFACGTAAVITPVARVRH 326
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 127/321 (39%), Positives = 175/321 (54%), Gaps = 13/321 (4%)
Query: 57 ADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTK 116
AD+DW LGFS D Y + K + G L+ I L+ + L+YGQ +EG K
Sbjct: 22 ADIDWSTLGFSYIRTDLRY-LAHWKDGEWDAGTLTEDNQIHLAEGSTALHYGQQCFEGLK 80
Query: 117 AYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGK-G 175
AYR DG I LFRPD NA+RM++ R+ MP S +QF+DA Q+ AN+ ++PP G G
Sbjct: 81 AYRCADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGG 140
Query: 176 TLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSAPLNLYIEEEFVRAAPGGAG 235
+LY+RP +IG G +G+ APE+ F + PVG YFK G P N +I ++ RAAP G G
Sbjct: 141 SLYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYFKGGLTPTN-FITSDYDRAAPHGTG 199
Query: 236 GVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVV--KGNVISTPAT 293
K NYA L AK R F+DV+YLD +EE + N F + G TP +
Sbjct: 200 AAKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVTPQS 259
Query: 294 NGTILEGITRRSVIEIARD-YGYQVEERVIPVDELINADQVFCTGTAVVVAPVGSITYQN 352
+IL IT+ S++ +A G +VEE I +DEL + GTA V+ P+G I + +
Sbjct: 260 P-SILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQHGD 318
Query: 353 KRVEFKTGS------RSVYQE 367
F + S R +Y E
Sbjct: 319 DFHVFYSESEPGPVTRRLYDE 339
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/313 (32%), Positives = 167/313 (53%), Gaps = 14/313 (4%)
Query: 60 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYR 119
D +NL F D+M T++ S +++ + N+ L P ++ L+Y ++EG KA+R
Sbjct: 43 DPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFR 102
Query: 120 TEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYI 179
D +I LF+P+LN RM A R +P ++ ++ ++Q+ ++ WVP +LYI
Sbjct: 103 GVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYI 162
Query: 180 RPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGS-APLNLYIEEEFVRAAPGGAGGVK 238
RP IG+ P LG+ + SPVG YF G+ P++L+ ++VRA GG G K
Sbjct: 163 RPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCK 222
Query: 239 AISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGN-----VISTPAT 293
NY L A A G VL+L + + + EV + N+F+ N ++TP
Sbjct: 223 MGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQ-ITEVGTMNLFLYWINEDGEEELATPPL 281
Query: 294 NGTILEGITRRSVIEIARDYG-YQVEERVIPVDELINA------DQVFCTGTAVVVAPVG 346
+G IL G+TRR ++++A +G ++V ER + +D+L A ++F +GTA VV PV
Sbjct: 282 DGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVS 341
Query: 347 SITYQNKRVEFKT 359
I Y+ + + T
Sbjct: 342 DILYKGETIHIPT 354
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 174 bits (441), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 166/313 (53%), Gaps = 14/313 (4%)
Query: 60 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYR 119
D +NL F D+M T++ S +++ + N+ L P ++ L+Y ++EG KA+R
Sbjct: 23 DPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFR 82
Query: 120 TEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYI 179
D +I LF+P+LN RM A R +P ++ ++ ++Q+ ++ WVP +LYI
Sbjct: 83 GVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYI 142
Query: 180 RPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGS-APLNLYIEEEFVRAAPGGAGGVK 238
RP IG+ P LG+ + SPVG YF G+ P++L+ ++VRA GG G K
Sbjct: 143 RPAFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCK 202
Query: 239 AISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGN-----VISTPAT 293
NY L A G VL+L + + + EV + N+F+ N ++TP
Sbjct: 203 MGGNYGSSLFAQCEDVDNGCQQVLWLYGRDHQ-ITEVGTMNLFLYWINEDGEEELATPPL 261
Query: 294 NGTILEGITRRSVIEIARDYG-YQVEERVIPVDELINA------DQVFCTGTAVVVAPVG 346
+G IL G+TRR ++++A +G ++V ER + +D+L A ++F +GTA VV PV
Sbjct: 262 DGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFSSGTACVVCPVS 321
Query: 347 SITYQNKRVEFKT 359
I Y+ + + T
Sbjct: 322 DILYKGETIHIPT 334
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/331 (32%), Positives = 173/331 (52%), Gaps = 35/331 (10%)
Query: 44 PGKPSVFSSD--DEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPS 101
PG+P VF D ++W++ G+ Q ++ + N+ L P+
Sbjct: 24 PGEPLVFGKTFTDHMLMVEWNDKGWG-------------------QPRIQPFQNLTLHPA 64
Query: 102 AAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQI 161
++ L+Y ++EG KA++ +D ++ LFRP LN RM A R+C+PS + ++ ++++
Sbjct: 65 SSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRL 124
Query: 162 ALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGS-APLNL 220
+K WVP +LY+RP+LIG+ P LG+ PVG YF GS P++L
Sbjct: 125 IEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSL 184
Query: 221 YIEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNI 280
+ F+RA GG G K NY P + A RG VL+L + + + EV + NI
Sbjct: 185 LADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNI 243
Query: 281 FVVKGN-----VISTPATNGTILEGITRRSVIEIARDYG-YQVEERVIPVDELINA---- 330
FV + + TP NG IL G+ R+S++++A+ +G ++V ER I + +L+ A
Sbjct: 244 FVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEG 303
Query: 331 --DQVFCTGTAVVVAPVGSITYQNKRVEFKT 359
+VF +GTA VAPV I Y+++ + T
Sbjct: 304 RVREVFGSGTAAQVAPVHRILYKDRNLHIPT 334
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/331 (32%), Positives = 173/331 (52%), Gaps = 35/331 (10%)
Query: 44 PGKPSVFSSD--DEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPS 101
PG+P VF D ++W++ G+ Q ++ + N+ L P+
Sbjct: 24 PGEPLVFGKTFTDHMLMVEWNDKGWG-------------------QPRIQPFQNLTLHPA 64
Query: 102 AAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQI 161
++ L+Y ++EG KA++ +D ++ LFRP LN RM A R+C+PS + ++ ++++
Sbjct: 65 SSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRL 124
Query: 162 ALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGS-APLNL 220
+K WVP +LY+RP+LIG+ P LG+ PVG YF GS P++L
Sbjct: 125 IEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSL 184
Query: 221 YIEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNI 280
+ F+RA GG G K NY P + A RG VL+L + + + EV + NI
Sbjct: 185 LADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNI 243
Query: 281 FVVKGN-----VISTPATNGTILEGITRRSVIEIARDYG-YQVEERVIPVDELINA---- 330
FV + + TP NG IL G+ R+S++++A+ +G ++V ER I + +L+ A
Sbjct: 244 FVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEG 303
Query: 331 --DQVFCTGTAVVVAPVGSITYQNKRVEFKT 359
+VF +GTA VAPV I Y+++ + T
Sbjct: 304 RVREVFGSGTACQVAPVHRILYKDRNLHIPT 334
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 172/331 (51%), Gaps = 35/331 (10%)
Query: 44 PGKPSVFSSD--DEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPS 101
PG+P VF D ++W++ G+ Q ++ + N+ L P+
Sbjct: 24 PGEPLVFGKTFTDHMLMVEWNDKGWG-------------------QPRIQPFQNLTLHPA 64
Query: 102 AAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQI 161
++ L+Y ++EG KA++ +D ++ LFRP LN RM A R+C+PS + ++ ++++
Sbjct: 65 SSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRL 124
Query: 162 ALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGS-APLNL 220
+K WVP +LY+RP+LIG+ P LG+ PVG YF GS P++L
Sbjct: 125 IEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSL 184
Query: 221 YIEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNI 280
+ F+RA GG G K NY P + A RG VL+L + + + EV + NI
Sbjct: 185 LADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNI 243
Query: 281 FVVKGN-----VISTPATNGTILEGITRRSVIEIARDYG-YQVEERVIPVDELINA---- 330
FV + + TP NG IL G+ R+S++++A+ +G ++V ER I + +L+ A
Sbjct: 244 FVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEG 303
Query: 331 --DQVFCTGTAVVVAPVGSITYQNKRVEFKT 359
+VF +GTA V PV I Y+++ + T
Sbjct: 304 RVREVFGSGTAAQVCPVHRILYKDRNLHIPT 334
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 172/331 (51%), Gaps = 35/331 (10%)
Query: 44 PGKPSVFSSD--DEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPS 101
PG+P VF D ++W++ G+ Q ++ + N+ L P+
Sbjct: 24 PGEPLVFGKTFTDHMLMVEWNDKGWG-------------------QPRIQPFQNLTLHPA 64
Query: 102 AAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQI 161
++ L+Y ++EG KA++ +D ++ LFRP LN RM A R+C+PS + ++ ++++
Sbjct: 65 SSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRL 124
Query: 162 ALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGS-APLNL 220
+K WVP +LY+RP+LIG+ P LG+ PVG YF GS P++L
Sbjct: 125 IEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSL 184
Query: 221 YIEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNI 280
+ F+RA GG G K NY P + A RG VL+L + + + EV + NI
Sbjct: 185 LADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNI 243
Query: 281 FVVKGN-----VISTPATNGTILEGITRRSVIEIARDYG-YQVEERVIPVDELINA---- 330
FV + + TP NG IL G+ R+S++++A+ +G ++V ER I + +L+ A
Sbjct: 244 FVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEG 303
Query: 331 --DQVFCTGTAVVVAPVGSITYQNKRVEFKT 359
+VF +GTA V PV I Y+++ + T
Sbjct: 304 RVREVFGSGTACQVCPVHRILYKDRNLHIPT 334
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 167 bits (423), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 171/331 (51%), Gaps = 35/331 (10%)
Query: 44 PGKPSVFSSD--DEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPS 101
PG+P VF D ++W++ G+ Q ++ + N+ L P+
Sbjct: 24 PGEPLVFGKTFTDHMLMVEWNDKGWG-------------------QPRIQPFQNLTLHPA 64
Query: 102 AAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQI 161
++ L+Y ++EG KA++ +D ++ LFRP LN RM A R+ +PS + ++ ++++
Sbjct: 65 SSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECIRRL 124
Query: 162 ALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGS-APLNL 220
+K WVP +LY+RP+LIG+ P LG+ PVG YF GS P++L
Sbjct: 125 IEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSL 184
Query: 221 YIEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNI 280
+ F+RA GG G K NY P + A RG VL+L + + + EV + NI
Sbjct: 185 LADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNI 243
Query: 281 FVVKGN-----VISTPATNGTILEGITRRSVIEIARDYG-YQVEERVIPVDELINA---- 330
FV + + TP NG IL G+ R+S++++A+ +G ++V ER I + +L+ A
Sbjct: 244 FVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEG 303
Query: 331 --DQVFCTGTAVVVAPVGSITYQNKRVEFKT 359
+VF +GTA V PV I Y+++ + T
Sbjct: 304 RVREVFGSGTACQVCPVHRILYKDRNLHIPT 334
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 103/331 (31%), Positives = 170/331 (51%), Gaps = 35/331 (10%)
Query: 44 PGKPSVFSSD--DEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPS 101
PG+P VF D ++W++ G+ Q ++ + N+ L P+
Sbjct: 24 PGEPLVFGKTFTDHMLMVEWNDKGWG-------------------QPRIQPFQNLTLHPA 64
Query: 102 AAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQI 161
++ L+Y ++EG KA++ +D ++ LFRP LN RM A R+ +PS + ++ ++++
Sbjct: 65 SSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECIRRL 124
Query: 162 ALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGS-APLNL 220
+K WVP +L +RP+LIG+ P LG+ PVG YF GS P++L
Sbjct: 125 IEVDKDWVPDAAGTSLXVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSL 184
Query: 221 YIEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNI 280
+ F+RA GG G K NY P + A RG VL+L + + + EV + NI
Sbjct: 185 LADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNI 243
Query: 281 FVVKGN-----VISTPATNGTILEGITRRSVIEIARDYG-YQVEERVIPVDELINA---- 330
FV + + TP NG IL G+ R+S++++A+ +G ++V ER I + +L+ A
Sbjct: 244 FVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEG 303
Query: 331 --DQVFCTGTAVVVAPVGSITYQNKRVEFKT 359
+VF +GTA V PV I Y+++ + T
Sbjct: 304 RVREVFGSGTACQVCPVHRILYKDRNLHIPT 334
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 141/289 (48%), Gaps = 29/289 (10%)
Query: 67 SIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRIL 126
+ K ADY++ G++ R+ + ++ + L+YG V+EG + Y + G ++
Sbjct: 1 TTKKADYIWF----------NGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV 50
Query: 127 LFRPDLNASRMKIGAERMCMP-SPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIG 185
FR + R+ A+ P S S+D+ ++A + + N + YIRPL+
Sbjct: 51 -FRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFV 102
Query: 186 SGPVLGLGPAPEYT--FLAYASPVGNYFKEGSAPLNLYIE---EEFVRAAPGGA-GGVKA 239
+G+ P Y+ + A P G Y G+ L I+ + RAAP KA
Sbjct: 103 GDVGMGVNPPAGYSTDVIIAAFPWGAYL--GAEALEQGIDAMVSSWNRAAPNTIPTAAKA 160
Query: 240 ISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILE 299
NY L A+ G+ + + LD VN + E + N+F VK V+ TP + L
Sbjct: 161 GGNYLSSLLVGSEARRHGYQEGIALD-VN-GYISEGAGENLFEVKDGVLFTPPFTSSALP 218
Query: 300 GITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGTAVVVAPVGSI 348
GITR ++I++A++ G +V E+V+ + L AD+VF +GTA + PV S+
Sbjct: 219 GITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV 267
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 141/290 (48%), Gaps = 29/290 (10%)
Query: 66 FSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRI 125
+ K ADY++ G++ R+ + ++ + L+YG V+EG + Y + G +
Sbjct: 1 MTTKKADYIWF----------NGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPV 50
Query: 126 LLFRPDLNASRMKIGAERMCMP-SPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLI 184
+ FR + R+ A+ P S S+D+ ++A + + N + YIRPL+
Sbjct: 51 V-FRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIF 102
Query: 185 GSGPVLGLGPAPEYT--FLAYASPVGNYFKEGSAPLNLYIE---EEFVRAAPGGA-GGVK 238
+G+ P Y+ + A P G Y G+ L I+ + RAAP K
Sbjct: 103 VGDVGMGVNPPAGYSTDVIIAAFPWGAYL--GAEALEQGIDAMVSSWNRAAPNTIPTAAK 160
Query: 239 AISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTIL 298
A NY L A+ G+ + + LD VN + E + N+F VK V+ TP + L
Sbjct: 161 AGGNYLSSLLVGSEARRHGYQEGIALD-VN-GYISEGAGENLFEVKDGVLFTPPFTSSAL 218
Query: 299 EGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGTAVVVAPVGSI 348
GITR ++I++A++ G +V E+V+ + L AD+VF +GTA + PV S+
Sbjct: 219 PGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV 268
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 125/273 (45%), Gaps = 30/273 (10%)
Query: 85 FKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERM 144
+ G+L + + ++ L+YG GV+EG +AY+T DG +FR + R+ A+
Sbjct: 32 WMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIF 91
Query: 145 CMPSPSVDQFVDAVKQ-IALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAY 203
M P + ++A ++ + NK + Y+RP++ LG+ +A
Sbjct: 92 QMDVPFDQETLEAAQRDVVRENKL-------ESCYLRPIIWIGSEKLGVSAKGNTIHVAI 144
Query: 204 AS-PVGNYFKE----------GSAPLNLYIEEEFVRAAPGGAGGVKAISNYAPVLKALIR 252
A+ P G Y E S+ ++ VRA KA Y + A
Sbjct: 145 AAWPWGAYLGEEGLAKGIRVKTSSFTRHHVNVSMVRA--------KASGWYVNSILANQE 196
Query: 253 AKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARD 312
A + G+ + L LD V E S N F+V + TP + L+GITR +VI +A++
Sbjct: 197 ATADGYDEALLLDVDGY--VSEGSGENFFLVNRGKLYTPDL-ASCLDGITRDTVITLAKE 253
Query: 313 YGYQVEERVIPVDELINADQVFCTGTAVVVAPV 345
G +V E+ I DE+ AD+ F TGTA V P+
Sbjct: 254 AGIEVIEKRITRDEVYTADEAFFTGTAAEVTPI 286
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 116/255 (45%), Gaps = 22/255 (8%)
Query: 105 LNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSP-SVDQFVDAVKQIAL 163
L+YG V+EG +AY T G + FR + R A+ + M P + ++ +A+K++
Sbjct: 29 LHYGTSVFEGIRAYETAKGPAI-FRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVR 87
Query: 164 ANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPE--YTFLAYASPVGNYFKEGSAPLNL- 220
N G + YIRPL LG+ P P + A G Y E +
Sbjct: 88 RN-------GYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGAR 140
Query: 221 YIEEEFVR----AAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVS 276
I + R PG A K NY A + A + G + L LD V E S
Sbjct: 141 LITSSWARFPANVMPGKA---KVGGNYVNSALAKMEAVAAGADEALLLDE--EGYVAEGS 195
Query: 277 SCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCT 336
N+F V+ VI + LEGITR SVI IA+D GY+V+ D+L AD+VF T
Sbjct: 196 GENLFFVRDGVIYA-LEHSVNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMT 254
Query: 337 GTAVVVAPVGSITYQ 351
GTA V PV I ++
Sbjct: 255 GTAAEVTPVSMIDWR 269
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 274 EVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQV 333
E S N+F+VK + TP+ + IL+GITR +VI++A+ VEERV+ V EL AD+
Sbjct: 176 EGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEX 235
Query: 334 FCTGTAVVVAPV 345
F T T+ V PV
Sbjct: 236 FLTHTSAGVVPV 247
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 112/265 (42%), Gaps = 26/265 (9%)
Query: 89 QLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPS 148
Q+ + +++ +G GVYE K Y E +F + + R+ AE++ +
Sbjct: 8 QIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITI 62
Query: 149 P-SVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPV 207
P + D+F + ++ N+ G +Y + + G+ P A ++ +
Sbjct: 63 PYTKDKFHQLLHELVEKNEL-----NTGHIYFQ-VTRGTSP-----RAHQFPENTVKPVI 111
Query: 208 GNYFKEGSAPL-NLY--IEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYL 264
Y KE PL NL ++ FV +K+++ VL AK Y
Sbjct: 112 IGYTKENPRPLENLEKGVKATFVEDIRWLRCDIKSLNLLGAVL-----AKQEAHEKGCYE 166
Query: 265 DSVNRKN-VEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIP 323
++R N V E SS N+F +K ++ T N IL+GITR VI A + V+E
Sbjct: 167 AILHRNNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFT 226
Query: 324 VDELINADQVFCTGTAVVVAPVGSI 348
E + D++F T T + PV I
Sbjct: 227 THEALKMDELFVTSTTSEITPVIEI 251
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 112/265 (42%), Gaps = 26/265 (9%)
Query: 89 QLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPS 148
Q+ + +++ +G GVYE K Y E +F + + R+ AE++ +
Sbjct: 8 QIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITI 62
Query: 149 P-SVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPV 207
P + D+F + ++ N+ G +Y + + G+ P A ++ +
Sbjct: 63 PYTKDKFHQLLHELVEKNEL-----NTGHIYFQ-VTRGTSP-----RAHQFPENTVKPVI 111
Query: 208 GNYFKEGSAPL-NLY--IEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYL 264
Y KE PL NL ++ FV +K+++ VL AK Y
Sbjct: 112 IGYTKENPRPLENLEKGVKATFVEDIRWLRCDIKSLNLLGAVL-----AKQEAHEKGCYE 166
Query: 265 DSVNRKN-VEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIP 323
++R N V E SS N+F +K ++ T N IL+GITR VI A + V+E
Sbjct: 167 AILHRNNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFT 226
Query: 324 VDELINADQVFCTGTAVVVAPVGSI 348
E + D++F T T + PV I
Sbjct: 227 THEALKMDELFVTSTTSEITPVIEI 251
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 112/265 (42%), Gaps = 26/265 (9%)
Query: 89 QLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPS 148
Q+ + +++ +G GVYE K Y E +F + + R+ AE++ +
Sbjct: 8 QIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITI 62
Query: 149 P-SVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPV 207
P + D+F + ++ N+ G +Y + + G+ P A ++ +
Sbjct: 63 PYTKDKFHQLLHELVEKNEL-----NTGHIYFQ-VTRGTSP-----RAHQFPENTVKPVI 111
Query: 208 GNYFKEGSAPL-NLY--IEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYL 264
Y KE PL NL ++ FV +K+++ VL AK Y
Sbjct: 112 IGYTKENPRPLENLEKGVKATFVEDIRWLRCDIKSLNLLGAVL-----AKQEAHEKGCYE 166
Query: 265 DSVNRKN-VEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIP 323
++R N V E SS N+F +K ++ T N IL+GITR VI A + V+E
Sbjct: 167 AILHRNNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFT 226
Query: 324 VDELINADQVFCTGTAVVVAPVGSI 348
E + D++F T T + PV I
Sbjct: 227 THEALKMDELFVTSTTSEITPVIEI 251
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 112/265 (42%), Gaps = 26/265 (9%)
Query: 89 QLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPS 148
Q+ + +++ +G GVYE K Y E +F + + R+ AE++ +
Sbjct: 8 QIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITI 62
Query: 149 P-SVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPV 207
P + D+F + ++ N+ G +Y + + G+ P A ++ +
Sbjct: 63 PYTKDKFHQLLHELVEKNEL-----NTGHIYFQ-VTRGTSP-----RAHQFPENTVKPVI 111
Query: 208 GNYFKEGSAPL-NLY--IEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYL 264
Y KE PL NL ++ FV +K+++ VL AK Y
Sbjct: 112 IGYTKENPRPLENLEKGVKATFVEDIRWLRCDIKSLNLLGAVL-----AKQEAHEKGCYE 166
Query: 265 DSVNRKN-VEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIP 323
++R N V + SS N+F +K ++ T N IL+GITR VI A + V+E
Sbjct: 167 AILHRNNTVTKGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFT 226
Query: 324 VDELINADQVFCTGTAVVVAPVGSI 348
E + D++F T T + PV I
Sbjct: 227 THEALKMDELFVTSTTSEITPVIEI 251
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 111/265 (41%), Gaps = 26/265 (9%)
Query: 89 QLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPS 148
Q+ + +++ +G GVYE K Y E +F + + R+ AE++ +
Sbjct: 8 QIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITI 62
Query: 149 P-SVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPV 207
P + D+F + ++ N+ G +Y + + G+ P A ++ +
Sbjct: 63 PYTKDKFHQLLHELVEKNEL-----NTGHIYFQ-VTRGTSP-----RAHQFPENTVKPVI 111
Query: 208 GNYFKEGSAPL-NLY--IEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYL 264
Y KE PL NL ++ FV +K+++ VL AK Y
Sbjct: 112 IGYTKENPRPLENLEKGVKATFVEDIRWLRCDIKSLNLLGAVL-----AKQEAHEKGCYE 166
Query: 265 DSVNRKN-VEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIP 323
++R N V SS N+F +K ++ T N IL+GITR VI A + V+E
Sbjct: 167 AILHRNNTVTSGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFT 226
Query: 324 VDELINADQVFCTGTAVVVAPVGSI 348
E + D++F T T + PV I
Sbjct: 227 THEALKMDELFVTSTTSEITPVIEI 251
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 111/265 (41%), Gaps = 26/265 (9%)
Query: 89 QLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPS 148
Q+ + +++ +G GVYE K Y E +F + + R+ AE++ +
Sbjct: 8 QIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITI 62
Query: 149 P-SVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPV 207
P + D+F + ++ N+ G +Y + + G+ P A ++ +
Sbjct: 63 PYTKDKFHQLLHELVEKNEL-----NTGHIYFQ-VTRGTSP-----RAHQFPENTVKPVI 111
Query: 208 GNYFKEGSAPL-NLY--IEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYL 264
Y KE PL NL ++ FV +K+++ VL AK Y
Sbjct: 112 IGYTKENPRPLENLEKGVKATFVEDIRWLRCDIKSLNLLGAVL-----AKQEAHEKGCYE 166
Query: 265 DSVNRKN-VEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIP 323
++R N V E SS N+F +K ++ T N I +GITR VI A + V+E
Sbjct: 167 AILHRNNTVTEGSSSNVFGIKDGILYTHPANNMIAKGITRDVVIACANEINMPVKEIPFT 226
Query: 324 VDELINADQVFCTGTAVVVAPVGSI 348
E + D++F T T + PV I
Sbjct: 227 THEALKMDELFVTSTTSEITPVIEI 251
>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase
(Ncgl2491) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.60 A Resolution
Length = 315
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 254 KSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDY 313
KS GF DV++ D V E ++ + KG+ I TP+ G IL G T+ ++ A +
Sbjct: 201 KSNGFDDVIFTDG---DRVLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEK 257
Query: 314 GYQVEERVIPVDELINADQVF 334
G++ +E+ + +D+L AD V+
Sbjct: 258 GWRCKEKDLSIDDLFGADSVW 278
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 242 NYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGI 301
NY + A +A + G D L+ ++ N +V E + N+F+++ N++ TP IL GI
Sbjct: 144 NYLEAIIAQRQAIAVGADDALFFNTEN--HVTETTCANLFLIENNILYTPRVEDGILPGI 201
Query: 302 TRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGT 338
TR +I + + V+E + + +AD VF T +
Sbjct: 202 TRARLISHCQQHKXSVQEISLTKKRIEDADAVFLTNS 238
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 235 GGVKAISNYAPVLKALIRA--KSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPA 292
G+K ++ VL IR+ + + L LDS V E + N+F KGNV+ TP
Sbjct: 137 AGIKHLNRLEQVL---IRSHLEQTNADEALVLDS--EGWVTECCAANLFWRKGNVVYTPR 191
Query: 293 TNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGTAVVVAPV 345
+ + GI R+ I + YQ+ E ++E + AD++ + V PV
Sbjct: 192 LDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPV 244
>pdb|4F4E|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase
From Burkholderia Pseudomallei Covalently Bound To
Pyridoxal Phosphate
pdb|4F4E|B Chain B, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase
From Burkholderia Pseudomallei Covalently Bound To
Pyridoxal Phosphate
Length = 420
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 88 GQLSRYANIELSPSAAVLNYGQG---------VYEGTKAYRTEDGRILLFRP--DLNASR 136
G +S ++ +EL+P +L + V G Y EDG+I L R D +R
Sbjct: 20 GSMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKAR 79
Query: 137 MKIGAERMCMPSPSVDQFVDAVKQIALAN 165
++ G R +P + + +V+++ L +
Sbjct: 80 VEAGLPRGYLPIDGIAAYDASVQKLLLGD 108
>pdb|4EFF|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase
From Burkholderia Pseudomallei
Length = 420
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 88 GQLSRYANIELSPSAAVLNYGQG---------VYEGTKAYRTEDGRILLFRP--DLNASR 136
G +S ++ +EL+P +L + V G Y EDG+I L R D +R
Sbjct: 20 GSMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKAR 79
Query: 137 MKIGAERMCMPSPSVDQFVDAVKQIALAN 165
++ G R +P + + +V+++ L +
Sbjct: 80 VEAGLPRGYLPIDGIAAYDASVQKLLLGD 108
>pdb|2ZGI|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
pdb|2ZGI|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
pdb|2ZGI|C Chain C, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
pdb|2ZGI|D Chain D, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
Length = 246
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 241 SNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEG 300
NY P AL A+ G + L LD+ V+ + + +G + LEG
Sbjct: 128 GNYLPYRLALEEARKEGAFEGLLLDAFG-HVVDGSRTSPLLFREGTLYLLEGG----LEG 182
Query: 301 ITRRSVIEIARDYGYQVE 318
ITR V E AR G +VE
Sbjct: 183 ITREKVAEAARGLGLRVE 200
>pdb|1JMS|A Chain A, Crystal Structure Of The Catalytic Core Of Murine Terminal
Deoxynucleotidyl Transferase
Length = 381
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 234 AGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVIST--- 290
A VK IS YA + + ++ F+D L + + N + E SC F+ +V+ +
Sbjct: 15 APAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPF 74
Query: 291 PATNGTILEGI-----TRRSVIEIARDYGYQVEERVIPVDELINADQVFCT 336
P T+ EGI +S+IE + G E + + DE + ++F +
Sbjct: 75 PITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTS 125
>pdb|3FI8|A Chain A, Crystal Structure Of Choline Kinase From Plasmodium
Falciparum, Pf14_0020
Length = 362
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 16/108 (14%)
Query: 259 SDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATN---------GTILE-GITRRSVIE 308
+D LY+ + + V + S CN V N I + TN T +E ITRR V
Sbjct: 4 TDPLYIKKICLEKVHDWSRCNEDDVCVNQILSGLTNQLFEVSIKEDTAIEYRITRRHV-- 61
Query: 309 IARDYGYQVEERVIPVDELINADQVFCTGTAVVVAPVGSITYQNKRVE 356
+ R YG V+ P+ E +V+ T + +AP+ T+ R+E
Sbjct: 62 LFRIYGKDVDALYNPLSEF----EVYKTMSKYRIAPLLLNTFDGGRIE 105
>pdb|3G5T|A Chain A, Crystal Structure Of Trans-Aconitate 3-Methyltransferase
From Yeast
Length = 299
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 6 GAACLRNLIHLFRPASSSLTSKLGACYFCTSHVASLQQPGKPSVF-------SSDDEYAD 58
G A L+ L +P + S L A T+ V + G P + SS D++
Sbjct: 48 GTATLQXAQEL-KPFEQIIGSDLSATXIKTAEVI---KEGSPDTYKNVSFKISSSDDFKF 103
Query: 59 LDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVY 112
L D++ + D + ++C+ +F++ Q S YAN+ + A+ Y ++
Sbjct: 104 LGADSV--DKQKIDXITAVECAHWFDFEKFQRSAYANLRKDGTIAIWGYADPIF 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,448,522
Number of Sequences: 62578
Number of extensions: 501344
Number of successful extensions: 1300
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1221
Number of HSP's gapped (non-prelim): 43
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)