RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 036241
(367 letters)
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 530 bits (1368), Expect = 0.0
Identities = 216/303 (71%), Positives = 254/303 (83%)
Query: 55 EYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEG 114
E AD+DWDNLGF + P DYMY MKC++ F +G+L R+ NIELSPSA VLNYGQG++EG
Sbjct: 66 ELADIDWDNLGFGLVPTDYMYIMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLFEG 125
Query: 115 TKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGK 174
KAYR EDG ILLFRP+ NA RM+ GAERMCMP+P+V+QFV+AVK+ LANKRWVPPPGK
Sbjct: 126 LKAYRKEDGNILLFRPEENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGK 185
Query: 175 GTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSAPLNLYIEEEFVRAAPGGA 234
G+LYIRPLL+GSG VLGL PAPEYTFL Y SPVGNYFKEG AP+NL +E EF RA PGG
Sbjct: 186 GSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGT 245
Query: 235 GGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATN 294
GGVK I NYA VLKA AK++G+SDVLYLD V++K +EEVSSCNIF+VK NVISTPA
Sbjct: 246 GGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIK 305
Query: 295 GTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGTAVVVAPVGSITYQNKR 354
GTIL GITR+S+I++AR G+QVEER + VDEL+ AD+VFCTGTAVVV+PVGSITY+ KR
Sbjct: 306 GTILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKR 365
Query: 355 VEF 357
V +
Sbjct: 366 VSY 368
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2.
Length = 388
Score = 520 bits (1339), Expect = 0.0
Identities = 251/330 (76%), Positives = 288/330 (87%), Gaps = 1/330 (0%)
Query: 39 ASLQQPGKPSVFSS-DDEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIE 97
++L++ K ++ + DD YADLDWDNLGF + PADYMY MKCSK F QG+LS Y NI+
Sbjct: 35 SALREERKKPLYQNGDDVYADLDWDNLGFGLNPADYMYVMKCSKDGEFTQGELSPYGNIQ 94
Query: 98 LSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDA 157
LSPSA VLNYGQ +YEGTKAYR E+G++LLFRPD NA RMK+GAERM MPSPSVDQFV+A
Sbjct: 95 LSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNA 154
Query: 158 VKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSAP 217
VKQ ALANKRWVPP GKGTLYIRPLL+GSGP+LGLGPAPEYTF+ YASPVGNYFKEG A
Sbjct: 155 VKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAA 214
Query: 218 LNLYIEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSS 277
LNLY+EEE+VRAAPGGAGGVK+I+NYAPVLKAL RAKSRGFSDVLYLDSV +K +EE SS
Sbjct: 215 LNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASS 274
Query: 278 CNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTG 337
CN+FVVKG ISTPATNGTILEGITR+SV+EIA D GYQV E+ + VDE+++AD+VFCTG
Sbjct: 275 CNVFVVKGRTISTPATNGTILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTG 334
Query: 338 TAVVVAPVGSITYQNKRVEFKTGSRSVYQE 367
TAVVVAPVG+ITYQ KRVE+KTG SV Q+
Sbjct: 335 TAVVVAPVGTITYQEKRVEYKTGDESVCQK 364
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 473 bits (1218), Expect = e-168
Identities = 193/313 (61%), Positives = 255/313 (81%), Gaps = 1/313 (0%)
Query: 52 SDDEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGV 111
+D++YA++ W+ LGF++ P DYMY KC + E+F +G++ Y +I +SP A +LNYGQG+
Sbjct: 13 ADEKYANVKWEELGFALVPTDYMYVAKCKQGESFSEGKIVPYGDISISPCAGILNYGQGL 72
Query: 112 YEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPP 171
+EG KAYRTEDGRI LFRPD NA RM+ GA+R+CM PS++QFV+AVKQ LANK+WVPP
Sbjct: 73 FEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPP 132
Query: 172 PGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSAPLNLYIEEEFVRAAP 231
PGKGTLYIRPLLIGSG VLG+ PAPEYTFL YASPVGNY K S LNL ++ + RA
Sbjct: 133 PGKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHKASSG-LNLKVDHKHRRAHS 191
Query: 232 GGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTP 291
GG GGVK+ +NY+PV+K+LI AKS GFSDVL+LD+ KN+EE+S+CNIF++KGN++STP
Sbjct: 192 GGTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTP 251
Query: 292 ATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGTAVVVAPVGSITYQ 351
T+GTIL G+TR+S+ E+ARD GYQVEER + VDEL+ A++VFCTGTAVVV V ++T+
Sbjct: 252 PTSGTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFH 311
Query: 352 NKRVEFKTGSRSV 364
+K+V+++TG ++
Sbjct: 312 DKKVKYRTGEEAL 324
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase.
Length = 384
Score = 451 bits (1160), Expect = e-159
Identities = 223/358 (62%), Positives = 267/358 (74%)
Query: 10 LRNLIHLFRPASSSLTSKLGACYFCTSHVASLQQPGKPSVFSSDDEYADLDWDNLGFSIK 69
LR + SS L+ G T AS+ + D+EYAD+DWD LGFS+
Sbjct: 3 LRRCLPQSSTTSSYLSKIWGFRMHGTKAAASVVEEHVSGAEREDEEYADVDWDKLGFSLV 62
Query: 70 PADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFR 129
D+M+ K + NF+QG LSRY NIEL+P+A +LNYGQG+ EG KAYR EDGRILLFR
Sbjct: 63 RTDFMFATKSCRDGNFEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFR 122
Query: 130 PDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPV 189
P+LNA RMKIGAERMCM SPSV QF++ VKQ LAN+RWVPPPGKG+LY+RPLL GSG
Sbjct: 123 PELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLFGSGAS 182
Query: 190 LGLGPAPEYTFLAYASPVGNYFKEGSAPLNLYIEEEFVRAAPGGAGGVKAISNYAPVLKA 249
LG+ APEYTFL + SPV NYFKEG+A LNLY+EE RA GG GGVKAISNY PVL+
Sbjct: 183 LGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLEV 242
Query: 250 LIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEI 309
+ RAKSRGFSDVLYLD+ KN+EEVS+ NIF+VKGN+I TPAT+GTIL GITR+S+IEI
Sbjct: 243 MRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATSGTILGGITRKSIIEI 302
Query: 310 ARDYGYQVEERVIPVDELINADQVFCTGTAVVVAPVGSITYQNKRVEFKTGSRSVYQE 367
A D GY+VEER +PV+EL A++VFCTGTA VA VGSIT++N R E+K G V Q+
Sbjct: 303 ALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTEYKVGDGIVTQQ 360
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 401 bits (1033), Expect = e-140
Identities = 137/327 (41%), Positives = 191/327 (58%), Gaps = 18/327 (5%)
Query: 46 KPSVFSSDDEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQ-----LSRYANIELSP 100
+ DE +DW NLGF D+M + ++K G+ L Y +EL P
Sbjct: 4 TLKPNPTSDEKRAIDWANLGFGYVFTDHMVVI------DYKDGKWHDARLVPYGPLELDP 57
Query: 101 SAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQ 160
+A VL+YGQ ++EG KAYR +DG I+LFRPD NA R++ A+R+ MP + F++AVKQ
Sbjct: 58 AATVLHYGQEIFEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQ 117
Query: 161 IALANKRWVPPPGKG-TLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSAPLN 219
+ A++ WVPP G+G +LY+RP +I + P LG+ PA EY F ASPVG YFK G P++
Sbjct: 118 LVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVKPVS 177
Query: 220 LYIEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCN 279
+++ +E+ RAAPGG G K NYA L A AK +G VLYLD+V +EEV N
Sbjct: 178 IWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMN 237
Query: 280 IFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQ------V 333
F + + TP +G+IL GITR S++++A D G VEER + +DE
Sbjct: 238 FFFITKDGTVTPPLSGSILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEA 297
Query: 334 FCTGTAVVVAPVGSITYQNKRVEFKTG 360
F GTA V+ P+G I Y++K G
Sbjct: 298 FACGTAAVITPIGGIKYKDKEFVIGDG 324
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 354 bits (912), Expect = e-123
Identities = 128/261 (49%), Positives = 165/261 (63%), Gaps = 2/261 (0%)
Query: 97 ELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVD 156
L P+ L+YGQ V+EG KAYRT DG+I+LFRPD NA R+ A R+ +P SV++F+D
Sbjct: 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFID 60
Query: 157 AVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSA 216
A+K++ + WVP G +LYIRP + G+ P LG+ PA EY F +ASPVG YFK G
Sbjct: 61 AIKELVKLDADWVPYGGGASLYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEK 120
Query: 217 PLNLYIEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVS 276
++ + F RAAPGG G KA NYA L A A +G+ L+LD + V EV
Sbjct: 121 GVSALV-SSFRRAAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDGAH-GYVAEVG 178
Query: 277 SCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCT 336
+ NIF VK + TP +G+IL GITR S++E+ARD G +VEER I DEL AD+VF T
Sbjct: 179 TMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFAT 238
Query: 337 GTAVVVAPVGSITYQNKRVEF 357
GTA VV PVG I Y+ K
Sbjct: 239 GTAAVVTPVGEIDYRGKEPGE 259
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 312 bits (801), Expect = e-105
Identities = 134/292 (45%), Positives = 189/292 (64%), Gaps = 11/292 (3%)
Query: 87 QGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCM 146
G+L+ Y + L P + VL+YGQ +EG KAYR DG I+LFRPD NA+R++ A R+ M
Sbjct: 3 NGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLM 62
Query: 147 PSPSVDQFVDAVKQIALANKRWVPPPGKG-TLYIRPLLIGSGPVLGLGPAPEYTFLAYAS 205
P + F++A++Q+ ANK WVPP G G +LY+RP +IG+ P LG+ PAPEY F +AS
Sbjct: 63 PELPDELFLEALRQLVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFAS 122
Query: 206 PVGNYFKEGSAPLNLYIEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLD 265
PVG YFK G AP+++++ E+ RAAPGG G VK NYA L A +A +G V+YLD
Sbjct: 123 PVGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAAEQGCDQVVYLD 182
Query: 266 SVNRKNVEEVSSCNIFVVKGNV-ISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPV 324
V +EEV + N F + G+ + TP +G+IL GITR S++++A+D G +VEER I +
Sbjct: 183 PVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRIDI 242
Query: 325 DEL----INADQVFCTGTAVVVAPVGSITYQNKRVEFKTG-----SRSVYQE 367
DEL ++VF GTA V+ PVG I + K V F +G ++++Y E
Sbjct: 243 DELKAFVEAGEEVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKALYDE 294
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 260 bits (667), Expect = 4e-86
Identities = 100/253 (39%), Positives = 135/253 (53%), Gaps = 18/253 (7%)
Query: 104 VLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSP-SVDQFVDAVKQIA 162
L+YG GV+EG +A + LFR D + R+ A+R+ +P P ++ +A+K++
Sbjct: 3 GLHYGDGVFEGLRAGK-----GRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELV 57
Query: 163 LANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAP--EYTFLAYASPVGNYFKEGSAPLNL 220
AN +LYIRPLL LG+ P P E TF+ +ASPVG Y K G + L
Sbjct: 58 AANN-------GASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRL 110
Query: 221 YIEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNI 280
+ RAAPGG G K + A A G + L LD V E S+ N+
Sbjct: 111 ITSPDRRRAAPGGTGDAKT-GGNLNSVLAKQEAAEAGADEALLLDDNG--YVTEGSASNV 167
Query: 281 FVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGTAV 340
F+VK + TP +G IL GITR SVIE+A++ G +VEER I +DEL AD+VF TGTA
Sbjct: 168 FIVKDGELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAA 227
Query: 341 VVAPVGSITYQNK 353
V PV I +
Sbjct: 228 EVTPVTEIDGRGI 240
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 233 bits (596), Expect = 5e-75
Identities = 105/264 (39%), Positives = 145/264 (54%), Gaps = 16/264 (6%)
Query: 88 GQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMP 147
G+L + +LS L+YG GV+E +AY + LFR D + +R+K A+R+ +P
Sbjct: 8 GELVPEEDAKLSVLDRGLHYGDGVFETLRAYNGK-----LFRLDEHLARLKRSAKRLGLP 62
Query: 148 SPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPV 207
P ++ ++ + Q+ LA VP LYIRPL+ G G LG+ A E T + ASPV
Sbjct: 63 RPESEEEIELLIQLLLAKNNLVPG-----LYIRPLVRGGGGGLGVRDATEPTLIVAASPV 117
Query: 208 GNYFKEGSA--PLNLYIEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLD 265
G Y K G + L I VR AP G G K NY + A AK+ G + L LD
Sbjct: 118 GAYLKGGRLEKGVVLVISS-PVRRAPPGPGAAKKTGNYLSSVLAKREAKAAGADEALLLD 176
Query: 266 SVNRKNVEEVSSCNIFVVKGN-VISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPV 324
V E + N+F VKG+ V+ TP +G IL GITR S++E+A++ G VEER I +
Sbjct: 177 E--DGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVEERPITL 234
Query: 325 DELINADQVFCTGTAVVVAPVGSI 348
++L AD+VF T TA V PVG I
Sbjct: 235 EDLKQADEVFLTNTAAGVTPVGLI 258
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 152 bits (388), Expect = 1e-43
Identities = 91/260 (35%), Positives = 126/260 (48%), Gaps = 38/260 (14%)
Query: 105 LNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSP-SVDQFVDAVKQIAL 163
L+YG GV+EG +AY T G + FR + R+ A+ + M P SVD+ ++A +++
Sbjct: 30 LHYGTGVFEGIRAYDTPKGPAI-FRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVVR 88
Query: 164 ANKRWVPPPGKGTLYIRPLL-IGSGPVLGLGPAPEYT---FLAYASPVGNYFKEGSAPLN 219
N YIRPL+ +G GLG P A P G Y E +
Sbjct: 89 KNN---LKSA----YIRPLVFVGDE---GLGVRPHGLPTDVAIAAWPWGAYLGEEA---- 134
Query: 220 LYIEE-------EFVRAA----PGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVN 268
+E+ + R A P A KA NY + A A+ G+ + L LD
Sbjct: 135 --LEKGIRVKVSSWTRHAPNSIPTRA---KASGNYLNSILAKTEARRNGYDEALLLDV-- 187
Query: 269 RKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELI 328
V E S NIF+V+ V+ TP +ILEGITR +VI +A+D G +V ER I DEL
Sbjct: 188 EGYVSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELY 247
Query: 329 NADQVFCTGTAVVVAPVGSI 348
AD+VF TGTA V P+ +
Sbjct: 248 IADEVFFTGTAAEVTPIREV 267
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 141 bits (357), Expect = 2e-39
Identities = 83/266 (31%), Positives = 126/266 (47%), Gaps = 15/266 (5%)
Query: 88 GQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMP 147
G+ + + ++ L+YG GV+EG +AY T+ G + FR + R+ A+ M
Sbjct: 4 GEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDKGPAI-FRLKEHIQRLYDSAKIYRME 62
Query: 148 SP-SVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYT--FLAYA 204
P S ++ ++A ++ N + YIRPL+ LGL P Y + A
Sbjct: 63 IPYSKEELMEATRETLRKN-------NLRSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAA 115
Query: 205 SPVGNYFKEGSAPLNL-YIEEEFVRAAPGGA-GGVKAISNYAPVLKALIRAKSRGFSDVL 262
P G Y E + + + R AP KA NY L A A+ G+ + +
Sbjct: 116 WPWGAYLGEEALEKGIDAKVSSWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAI 175
Query: 263 YLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVI 322
LD V E S NIF+VK V+ TP +IL GITR +VI +A++ G +V E+ I
Sbjct: 176 LLDV--EGYVAEGSGENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKELGIEVVEQPI 233
Query: 323 PVDELINADQVFCTGTAVVVAPVGSI 348
+EL AD+ F TGTA + P+ +
Sbjct: 234 SREELYTADEAFFTGTAAEITPIREV 259
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 126 bits (318), Expect = 2e-34
Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 13/223 (5%)
Query: 128 FRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSG 187
F D + R++ A+ + S++ ++++ AN G+ +R L+
Sbjct: 1 FLLDEHLERLRRSAKALIGLPLSIEDLRKIIQELLEAN------GPAGSGRLRILVSRGD 54
Query: 188 PVLGLGPAPEYTFLAYASPVGNYFKEGSAPL--NLYIEEEFVRAAPGGAGGVKAISNYAP 245
GL P + + + L + V G K +
Sbjct: 55 GGRGLSPPEGAIPIIVSLIALASSAPPRLLITVKLRLSSYPVPRPLAGH---KTTNYLDN 111
Query: 246 VLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRS 305
VL AL A+ GF D L LD NV E S+ NIF+VKG + TP IL GITR++
Sbjct: 112 VLAALRAAERAGFDDALLLDE--DGNVTEGSTSNIFIVKGGTLYTPPLESGILPGITRQA 169
Query: 306 VIEIARDYGYQVEERVIPVDELINADQVFCTGTAVVVAPVGSI 348
++++A++ G +VEER + + +L AD+ F T + V PV SI
Sbjct: 170 LLDLAKELGIEVEERPLTLADLQEADEAFLTNSLRGVTPVTSI 212
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 123 bits (312), Expect = 4e-33
Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 25/247 (10%)
Query: 107 YGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSP-SVDQFVDAVKQIALAN 165
+G GVYE + Y +G+ F D + R+ A+ + + P + ++ + ++++ N
Sbjct: 23 FGDGVYEVIRVY---NGKP--FALDEHLDRLYRSAKELRIDIPYTREELKELIRELVAKN 77
Query: 166 KRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPE----YTFLAYASPVGNYFKEGSAPLNLY 221
+ G+G +YI+ + G GP P E +
Sbjct: 78 EG-----GEGDVYIQ-VTRGVGPRGHDFPKCVKPTVVIITQPLPLPPAELLEKGVRV--- 128
Query: 222 IEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIF 281
I +R +K+++ VL A AK G + + LD+ V E SS N+F
Sbjct: 129 ITVPDIR---WLRCDIKSLNLLNNVL-AKQEAKEAGADEAILLDADGL--VTEGSSSNVF 182
Query: 282 VVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGTAVV 341
+VK V+ TP + IL GITR +VIE+A++ G VEER ++EL AD+VF T T
Sbjct: 183 IVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADEVFLTSTTAE 242
Query: 342 VAPVGSI 348
V PV I
Sbjct: 243 VMPVVEI 249
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 113 bits (284), Expect = 8e-29
Identities = 82/251 (32%), Positives = 120/251 (47%), Gaps = 25/251 (9%)
Query: 105 LNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSP-SVDQFVDAVKQIAL 163
L+Y V+EG +AY G+I F+ ++ R++ AE + P SV + A K+
Sbjct: 32 LHYASSVFEGERAY---GGKI--FKLREHSERLRRSAELLDFEIPYSVAEIDAAKKETLA 86
Query: 164 ANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYAS-PVGNYF----KEGSAPL 218
AN G Y+RP+ ++G+ LA A+ +YF K L
Sbjct: 87 AN-------GLTDAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRL 139
Query: 219 NLYIEEEFVRAAPGGA-GGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSS 277
++ ++ R P A KA Y + A+++G++D L LD R V E +
Sbjct: 140 DI---AKWRRPDPETAPSAAKAAGLYMICTISKHAAEAKGYADALMLDY--RGYVAEATG 194
Query: 278 CNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTG 337
NIF VK VI TP T L+GITR++VIE+A+ G +V ER I +EL + F TG
Sbjct: 195 ANIFFVKDGVIHTP-TPDCFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFLTG 253
Query: 338 TAVVVAPVGSI 348
TA V PV I
Sbjct: 254 TAAEVTPVSEI 264
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 111 bits (280), Expect = 3e-28
Identities = 74/224 (33%), Positives = 107/224 (47%), Gaps = 22/224 (9%)
Query: 130 PDLNA--SRMKIGAERMCM-PSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIG- 185
PDL+ +R+ AE + + P+ S ++ ++ KR+ LYIRP+
Sbjct: 48 PDLDLHCARVNRSAEALGLKPTVSAEEIEALARE---GLKRF---DPDTALYIRPMYWAE 101
Query: 186 SGPVLGLGPAPEYTFLA---YASPVGNYFKEGSAPLNLYIEEEFVRAAPGGA-GGVKAIS 241
G G+ P PE T A +P+ + L L F R A KA
Sbjct: 102 DGFASGVAPDPESTRFALCLEEAPMP---EPTGFSLTL---SPFRRPTLEMAPTDAKAGC 155
Query: 242 NYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGI 301
Y +AL A+SRGF + L LD + NV E ++ N+F+VK V+ TP NGT L GI
Sbjct: 156 LYPNNARALREARSRGFDNALVLDMLG--NVAETATSNVFMVKDGVVFTPVPNGTFLNGI 213
Query: 302 TRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGTAVVVAPV 345
TR+ VI + R+ G V E + ++ + AD+VF TG V PV
Sbjct: 214 TRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPV 257
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 104 bits (263), Expect = 5e-26
Identities = 84/264 (31%), Positives = 120/264 (45%), Gaps = 61/264 (23%)
Query: 107 YGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSP-SVDQFVDAVKQIALAN 165
YG GV+EG +AY +GR+ FR + R+ A+ + + P S ++ + V + N
Sbjct: 28 YGDGVFEGIRAY---NGRV--FRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETLRKN 82
Query: 166 KRWVPPPGKGTL---YIRPLLI-GSGPVLGLGP--APEYTFLAYASPVGNYFKEGSAPLN 219
L YIR ++ G G LGL P P+ T + A P+G Y E
Sbjct: 83 N----------LRDAYIRLVVSRGVGD-LGLDPRKCPKPTVVCIAEPIGLYPGE------ 125
Query: 220 LYIEEEFVRAAPGGAGGVKAIS------------------NYAPVLKALIRAKSRGFSDV 261
LY E+ G+K I+ NY + A I A G +
Sbjct: 126 LY--EK----------GLKVITVSTRRNRPDALSPQVKSLNYLNNILAKIEANLAGVDEA 173
Query: 262 LYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERV 321
+ L+ + V E + NIF+VK + TP T LEGITR +VIEIA++ G V E +
Sbjct: 174 IMLN--DEGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIPVREEL 231
Query: 322 IPVDELINADQVFCTGTAVVVAPV 345
+ +L AD+VF TGTA V PV
Sbjct: 232 FTLHDLYTADEVFLTGTAAEVIPV 255
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 99.3 bits (248), Expect = 4e-24
Identities = 73/250 (29%), Positives = 117/250 (46%), Gaps = 32/250 (12%)
Query: 107 YGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANK 166
YG GV+E +A DGR+ L D + +R++ A R+ +P P + + A++ + AN
Sbjct: 6 YGDGVFETMRAL---DGRLFLL--DAHLARLERSARRLGIPEPDLPRLRAALESLLAAN- 59
Query: 167 RWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKE--------GSAPL 218
+G IR L++ GP A V + P+
Sbjct: 60 ----DIDEG--RIR-LILSRGPGGRGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCPV 112
Query: 219 NLYIEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSC 278
L G+K + NY + A A+ RG + L+LD+ R V E ++
Sbjct: 113 RLGE--------QPLLAGLKHL-NYLENVLAKREARDRGADEALFLDTDGR--VIEGTAS 161
Query: 279 NIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGT 338
N+F VK + TP+ + L GITR+ VIE+A GY V+ER + +++L+ AD+ F T +
Sbjct: 162 NLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNS 221
Query: 339 AVVVAPVGSI 348
+ VAPV +I
Sbjct: 222 LLGVAPVTAI 231
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 83.9 bits (208), Expect = 2e-18
Identities = 62/246 (25%), Positives = 99/246 (40%), Gaps = 22/246 (8%)
Query: 108 GQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKR 167
G GV+E DGR L R+ A + +P P +D++ A + LA +
Sbjct: 38 GDGVFETLLVR---DGRPCNLEAHL--ERLARSAALLDLPEPDLDRWRRA---VELAIEE 89
Query: 168 WVPPPGKGTL---YIRPLLIGSGPV--LGLGPAPEYTFLAYASPVGNYFKEGSAPLNLYI 222
W P + L Y R G P + + P PE A V +
Sbjct: 90 WRAPEDEAALRLVYSRGRESGGAPTAWVTVSPVPERVARARREGV----SVITLDRGYPS 145
Query: 223 EEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFV 282
+ AP G K +S YA + AL A RG DV++ + V E + + +
Sbjct: 146 --DAAERAPWLLAGAKTLS-YAVNMAALRYAARRGADDVIFTSTDGY--VLEGPTSTVVI 200
Query: 283 VKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGTAVVV 342
+ + TP IL G T+ ++ E+AR+ G+ E R + +L AD V+ + +
Sbjct: 201 ATDDRLLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADGVWLVSSVRLA 260
Query: 343 APVGSI 348
A V ++
Sbjct: 261 ARVHTL 266
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 77.2 bits (191), Expect = 3e-16
Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Query: 250 LIRA--KSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVI 307
LI+A ++ + L LD+ NV E ++ NIF KGN + TP + + G+ R+ V+
Sbjct: 147 LIKAELENSEADEALVLDTDG--NVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVL 204
Query: 308 EIARDYGYQVEERVIPVDELINADQVFCTGTAVVVAPVGSI 348
+ GY++EE ++EL++AD+VF T + + V PV +I
Sbjct: 205 ALLPALGYEIEEVKAGLEELLSADEVFITNSLMGVVPVNAI 245
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 69.8 bits (171), Expect = 1e-13
Identities = 65/258 (25%), Positives = 104/258 (40%), Gaps = 48/258 (18%)
Query: 107 YGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSP-SVDQFVDAVKQIALAN 165
+G GVYE + Y + LF + + R+ A ++ + P + ++ + ++ N
Sbjct: 25 FGDGVYEVIRVYNGK-----LFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELVEKN 79
Query: 166 KRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSAPLNLYIEEE 225
G +Y + + G P PA + A Y KE P EE
Sbjct: 80 NL-----NTGHVYFQ-VTRGVAPRNHQFPAGTVKPVITA-----YTKEVPRP-----EEN 123
Query: 226 FVRAAPGGAGGVKAIS--------------NYAPVLKALIRAKSRG-FSDVLYLDSVNRK 270
+ GVKAI+ N + A A +G + +L+
Sbjct: 124 LEK-------GVKAITVEDIRWLRCDIKSLNLLGNVLAKQEAHEKGAYEAILHRGGT--- 173
Query: 271 NVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINA 330
V E SS N++ +K V+ T N IL GITR ++ A + G V+E +EL+NA
Sbjct: 174 -VTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNA 232
Query: 331 DQVFCTGTAVVVAPVGSI 348
D+VF + T + PV I
Sbjct: 233 DEVFVSSTTAEITPVIEI 250
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 70.0 bits (172), Expect = 1e-13
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 279 NIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGT 338
N+F VKG+++ TP+ IL GITR VI++ + G +V+E +EL++AD+VF T +
Sbjct: 182 NLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNS 241
Query: 339 AVVVAP---VGSITYQNKRVEFKTGSRSVYQ 366
+ P + + K +++Y+
Sbjct: 242 IQEIVPLTRIEERDFPGKVGMVTKRLQNLYE 272
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 68.3 bits (168), Expect = 4e-13
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 250 LIRA--KSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVI 307
LIRA + + L LDS V E + N+F KG V+ TP + + G+ R+ ++
Sbjct: 149 LIRAELEQTEADEALVLDSEGW--VIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFIL 206
Query: 308 EIARDYGYQVEERVIPVDELINADQVFCTGTAVVVAPVGSI 348
E+ GY V E ++EL+ AD+VF + + V PV +I
Sbjct: 207 ELLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAI 247
Score = 33.3 bits (77), Expect = 0.17
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 105 LNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALA 164
YG G + R DG++ L + R++ ER+ +P Q +KQ+A
Sbjct: 19 TQYGDGCFT---TARVRDGQVSLL--SRHLQRLQDACERLAIPLDDWAQLEQEMKQLAAE 73
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 63.8 bits (156), Expect = 2e-11
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 20/139 (14%)
Query: 226 FVRAAPGGAGGVKAIS--------------NYAPVLKALIRAKSRGFSDVLYLDSVNRKN 271
F R A G+K I+ P + A AK G + +D
Sbjct: 122 FARPAAAAETGIKVITVPDNRWKRCDIKSVGLLPNVLAKQAAKEAGAQEAWMVD---DGF 178
Query: 272 VEEVSSCNIFVVK--GNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELIN 329
V E +S N ++V G +++ PA N IL GITR ++I++A++ G +VEER + E
Sbjct: 179 VTEGASSNAWIVTKDGKLVTRPADNF-ILPGITRHTLIDLAKELGLEVEERPFTLQEAYA 237
Query: 330 ADQVFCTGTAVVVAPVGSI 348
A + F T + V PV I
Sbjct: 238 AREAFITAASSFVFPVVQI 256
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 63.4 bits (154), Expect = 3e-11
Identities = 74/256 (28%), Positives = 106/256 (41%), Gaps = 45/256 (17%)
Query: 107 YGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSP-SVDQFVDAVKQIALAN 165
YG GV+EG ++Y G + F + R+ A+ + + P +VD+ +AV Q N
Sbjct: 29 YGDGVFEGIRSY---GGNV--FCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTLQKN 83
Query: 166 KRWVPPPGKGTLYIRPLLIGSGPV-LGLGP----APEYTFLAYASPVGNYFKEGSAPLNL 220
YIR L++ G LGL P P +A L L
Sbjct: 84 -------EYADAYIR-LIVSRGKGDLGLDPRSCVKPSVIIIA-------------EQLKL 122
Query: 221 YIEEEF-----VRAAPGGAGGVKAIS------NYAPVLKALIRAKSRGFSDVLYLDSVNR 269
+ +E + V + A+ NY + I A G + L L+ +
Sbjct: 123 FPQEFYDNGLSVVSVASRRNTPDALDPRIKSMNYLNNVLVKIEAAQAGVLEALMLN--QQ 180
Query: 270 KNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELIN 329
V E S N+FVVK + TP + LEGITR SVIE+ EER ++
Sbjct: 181 GYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYV 240
Query: 330 ADQVFCTGTAVVVAPV 345
AD+VF TGTA + PV
Sbjct: 241 ADEVFLTGTAAELIPV 256
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 53.9 bits (129), Expect = 4e-08
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 236 GVKAIS--------------NYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIF 281
GV+AIS N P + A +A+ +G + L+ V V E S N F
Sbjct: 134 GVRAISEPDTRWLRCDIKSLNLLPNILAATKAERKGCKEALF---VRNGTVTEGSHSNFF 190
Query: 282 VVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGTAVV 341
++K + T N IL GI R+ V+ +A+ V+E + V ++ AD+ F TGT +
Sbjct: 191 LIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTIE 250
Query: 342 VAPV 345
+ P+
Sbjct: 251 ILPM 254
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 38.5 bits (90), Expect = 0.003
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 242 NYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNI-FVVKGNVISTPATNGTILEG 300
NY P + + A+ RG ++LD V E + N+ F+ + P + IL G
Sbjct: 188 NYLPNALSQMEAEERGAFAGIWLD--EEGFVAEGPNMNVAFLTNDGELVLPPFD-KILSG 244
Query: 301 ITRRSVIEIA-----RDYGYQVEERVIPVDELINADQVFCTGTAVVVAPV 345
T R V+E+A V++R I V+E AD++ G+ V V P+
Sbjct: 245 CTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPI 294
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 34.3 bits (79), Expect = 0.076
Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 23/122 (18%)
Query: 60 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYR 119
D+ LG S +D T + ++ + SR L +Y GT R
Sbjct: 91 DFRRLGISYDWSDEYITTE-PEYSKAVELIFSRLYEKGL------------IYRGTHPVR 137
Query: 120 TEDG---RILLFRPDL--NASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRW--VPPP 172
+ + F+ L R KI E + ++ +++++ A++ +R+ P P
Sbjct: 138 ITEQWFFDMPKFKEKLLKALRRGKIVPEHV---KNRMEAWLESLLDWAISRQRYWGTPLP 194
Query: 173 GK 174
Sbjct: 195 ED 196
>gnl|CDD|236438 PRK09266, PRK09266, hypothetical protein; Provisional.
Length = 266
Score = 32.6 bits (75), Expect = 0.22
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 247 LKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSV 306
L A+ GF D L++D R V E ++ N+ G + P L G+T +
Sbjct: 142 LHLRRLAQRAGFDDALFVDPDGR--VSEGATWNLGFWDGGAVVWPQ--APALPGVTMALL 197
Query: 307 IEIARDYGYQVEERVIPVDELINADQVFCTGTAVVVAPVGSI 348
G R + + +L F V +I
Sbjct: 198 QRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAI 239
>gnl|CDD|223338 COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and
metabolism].
Length = 485
Score = 32.2 bits (74), Expect = 0.41
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 65 GFSIKPADYMYTMKC 79
G SIKPA M TMK
Sbjct: 261 GISIKPAAGMDTMKY 275
>gnl|CDD|234863 PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.
Length = 483
Score = 31.7 bits (73), Expect = 0.73
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 65 GFSIKPADYMYTMKC 79
G S+KPA M MK
Sbjct: 262 GISLKPAAGMDEMKY 276
>gnl|CDD|235330 PRK05015, PRK05015, aminopeptidase B; Provisional.
Length = 424
Score = 30.6 bits (70), Expect = 1.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 62 DNLGFSIKPADYMYTMKC 79
D+ G+SIKP+ M +MK
Sbjct: 196 DSGGYSIKPSAGMDSMKS 213
>gnl|CDD|238247 cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal
and catalytic domains. Family M17 contains zinc- and
manganese-dependent exopeptidases ( EC 3.4.11.1),
including leucine aminopeptidase. They catalyze removal
of amino acids from the N-terminus of a protein and play
a key role in protein degradation and in the metabolism
of biologically active peptides. They do not contain
HEXXH motif (which is used as one of the signature
patterns to group the peptidase families) in the
metal-binding site. The two associated zinc ions and the
active site are entirely enclosed within the C-terminal
catalytic domain in leucine aminopeptidase. The enzyme
is a hexamer, with the catalytic domains clustered
around the three-fold axis, and the two trimers related
to one another by a two-fold rotation. The N-terminal
domain is structurally similar to the ADP-ribose binding
Macro domain. This family includes proteins from
bacteria, archaea, animals and plants.
Length = 468
Score = 29.8 bits (68), Expect = 2.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 65 GFSIKPADYMYTMKC 79
G S+KPA M MK
Sbjct: 248 GLSLKPAAGMDGMKY 262
>gnl|CDD|215434 PLN02813, PLN02813, pfkB-type carbohydrate kinase family protein.
Length = 426
Score = 29.4 bits (66), Expect = 3.0
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 256 RGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGY 315
+G S + DS +S + VV+G + P T I E A G
Sbjct: 206 QGTSSTVNYDSCLAS---AISKSRVLVVEGYLWELPQTIEAI------AQACEEAHRAGA 256
Query: 316 QV 317
V
Sbjct: 257 LV 258
>gnl|CDD|217772 pfam03871, RNA_pol_Rpb5_N, RNA polymerase Rpb5, N-terminal domain.
Rpb5 has a bipartite structure which includes a
eukaryote-specific N-terminal domain and a C-terminal
domain resembling the archaeal RNAP subunit H. The
N-terminal domain is involved in DNA binding and is part
of the jaw module in the RNA pol II structure. This
module is important for positioning the downstream DNA.
Length = 92
Score = 27.6 bits (62), Expect = 3.5
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 302 TRRSVIEIARDYGYQV--EERVIPVDE 326
RR+V+E+ RD GY V EE + ++E
Sbjct: 13 VRRTVMEMLRDRGYLVTEEELNLSLEE 39
>gnl|CDD|232926 TIGR00337, PyrG, CTP synthase. CTP synthase is involved in
pyrimidine ribonucleotide/ribonucleoside metabolism. The
enzyme catalyzes the reaction L-glutamine + H2O + UTP +
ATP = CTP + phosphate + ADP + L-glutamate. The enzyme
exists as a dimer of identical chains that aggregates as
a tetramer. This gene has been found circa 500 bp 5'
upstream of enolase in both beta (Nitrosomonas europaea)
and gamma (E.coli) subdivisions of proteobacterium (FEMS
Microbiol Lett 1998 Aug 1;165(1):153-7) [Purines,
pyrimidines, nucleosides, and nucleotides, Pyrimidine
ribonucleotide biosynthesis].
Length = 525
Score = 29.2 bits (66), Expect = 3.8
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 279 NIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINAD 331
V G V+S+ + +GIT S+ + + G +V +I +D IN D
Sbjct: 2 KYIFVTGGVVSS------LGKGITAASIGRLLKARGLKVT--IIKIDPYINID 46
>gnl|CDD|216171 pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic
domain. The two associated zinc ions and the active
site are entirely enclosed within the C-terminal
catalytic domain in leucine aminopeptidase.
Length = 311
Score = 29.2 bits (66), Expect = 3.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 62 DNLGFSIKPADYMYTMK 78
D+ G SIKP M MK
Sbjct: 91 DSGGISIKPGAGMDLMK 107
>gnl|CDD|217231 pfam02787, CPSase_L_D3, Carbamoyl-phosphate synthetase large chain,
oligomerisation domain. Carbamoyl-phosphate synthase
catalyzes the ATP-dependent synthesis of
carbamyl-phosphate from glutamine or ammonia and
bicarbonate. The carbamoyl-phosphate synthase (CPS)
enzyme in prokaryotes is a heterodimer of a small and
large chain.
Length = 122
Score = 27.2 bits (61), Expect = 7.5
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 238 KAISNYAPVLKALIR-AKSRGFSD 260
K + P+L L+R AK GFSD
Sbjct: 51 KELKKGLPLLDELLRKAKKLGFSD 74
>gnl|CDD|132761 cd07076, NR_LBD_GR, Ligand binding domain of the glucocorticoid
receptor, a member of the nuclear receptor superfamily.
The ligand binding domain of the glucocorticoid receptor
(GR): GR is a ligand-activated transcription factor
belonging to the nuclear receptor superfamily. It binds
with high affinity to cortisol and other
glucocorticoids. GR is expressed in almost every cell in
the body and regulates genes controlling a wide variety
of processes including the development, metabolism, and
immune response of the organism. In the absence of
hormone, the glucocorticoid receptor (GR) is complexes
with a variety of heat shock proteins in the cytosol.
The binding of the glucocorticoids results in release of
the heat shock proteins and transforms it to its active
state. One mechanism of action of GR is by direct
activation of gene transcription. The activated form of
GR forms dimers, translocates into the nucleus, and
binds to specific hormone responsive elements,
activating gene transcription. GR can also function as a
repressor of other gene transcription activators, such
as NF-kappaB and AF-1 by directly binding to them, and
bloc king the expression of their activated genes. Like
other members of the nuclear receptor (NR) superfamily
of ligand-activated transcription factors, GR has a
central well conserved DNA binding domain (DBD), a
variable N-terminal domain, a flexible hinge and a
C-terminal ligand binding domain (LBD). The LBD also
functions for dimerization and chaperone protein
association.
Length = 247
Score = 27.6 bits (61), Expect = 9.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 114 GTKAYRTEDGRILLFRPDLNASRMKIGAERMCMP 147
G ++YR +G +L F PDL I +RM +P
Sbjct: 79 GWRSYRQSNGNLLCFAPDL-----IINEQRMTLP 107
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,962,366
Number of extensions: 1859975
Number of successful extensions: 1574
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1539
Number of HSP's successfully gapped: 48
Length of query: 367
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 269
Effective length of database: 6,590,910
Effective search space: 1772954790
Effective search space used: 1772954790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.2 bits)