RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 036241
(367 letters)
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 444 bits (1145), Expect = e-157
Identities = 121/318 (38%), Positives = 187/318 (58%), Gaps = 11/318 (3%)
Query: 54 DEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYE 113
D + N GF D+M ++ + E + Q+ Y I+L PSA VL+YGQ ++E
Sbjct: 23 DAVRESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFE 82
Query: 114 GTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPP-P 172
G KAYR DG I+ FRP+ NA+R++ A R+ +P + F+++++Q+ +++WVPP
Sbjct: 83 GLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAG 142
Query: 173 GKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSAPLNLYIEEEFVRAAPG 232
G+ +LY+RP +I + P LG+ P+ EY +L ASP G YFK G P+++++ E+VRA+PG
Sbjct: 143 GEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPG 202
Query: 233 GAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGN----VI 288
G G K NYA L A +A G V++LD++ R+ VEE+ N+F V G+ +
Sbjct: 203 GTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARL 262
Query: 289 STPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINA------DQVFCTGTAVVV 342
TP +G++L GITR S++++A D G+ VEER I VDE +VF GTA V+
Sbjct: 263 VTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVI 322
Query: 343 APVGSITYQNKRVEFKTG 360
PV + + + G
Sbjct: 323 TPVSHVKHHDGEFTIADG 340
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 428 bits (1104), Expect = e-151
Identities = 101/318 (31%), Positives = 169/318 (53%), Gaps = 15/318 (4%)
Query: 57 ADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTK 116
+ L F D+M ++ + + + Q ++ + N+ L P+++ L+Y ++EG K
Sbjct: 21 KPGPGEPLVFGKTFTDHMLMVEWND-KGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMK 79
Query: 117 AYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGT 176
A++ +D ++ LFRP LN RM A R+C+PS + ++ ++++ +K WVP +
Sbjct: 80 AFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTS 139
Query: 177 LYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGS-APLNLYIEEEFVRAAPGGAG 235
LY+RP+LIG+ P LG+ PVG YF GS P++L + F+RA GG G
Sbjct: 140 LYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVG 199
Query: 236 GVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNV-----IST 290
K NY P + A RG VL+L + + + EV + NIFV + + T
Sbjct: 200 NYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVT 258
Query: 291 PATNGTILEGITRRSVIEIARDYG-YQVEERVIPVDELINADQ------VFCTGTAVVVA 343
P NG IL G+ R+S++++A+ +G ++V ER I + +L+ A + VF +GTA V
Sbjct: 259 PPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVC 318
Query: 344 PVGSITYQNKRVEFKTGS 361
PV I Y+++ + T
Sbjct: 319 PVHRILYKDRNLHIPTME 336
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 425 bits (1096), Expect = e-149
Identities = 102/318 (32%), Positives = 167/318 (52%), Gaps = 14/318 (4%)
Query: 57 ADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTK 116
D +NL F D+M T++ S +++ + N+ L P ++ L+Y ++EG K
Sbjct: 40 EKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLK 99
Query: 117 AYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGT 176
A+R D +I LF+P+LN RM A R +P ++ ++ ++Q+ ++ WVP +
Sbjct: 100 AFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSAS 159
Query: 177 LYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGS-APLNLYIEEEFVRAAPGGAG 235
LYIRP IG+ P LG+ + SPVG YF G+ P++L+ ++VRA GG G
Sbjct: 160 LYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTG 219
Query: 236 GVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGN-----VIST 290
K NY L A A G VL+L + + + EV + N+F+ N ++T
Sbjct: 220 DCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQ-ITEVGTMNLFLYWINEDGEEELAT 278
Query: 291 PATNGTILEGITRRSVIEIARDYG-YQVEERVIPVDELINADQ------VFCTGTAVVVA 343
P +G IL G+TRR ++++A +G ++V ER + +D+L A + +F +GTA VV
Sbjct: 279 PPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVC 338
Query: 344 PVGSITYQNKRVEFKTGS 361
PV I Y+ + + T
Sbjct: 339 PVSDILYKGETIHIPTME 356
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 170 bits (434), Expect = 1e-50
Identities = 73/251 (29%), Positives = 123/251 (49%), Gaps = 19/251 (7%)
Query: 105 LNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSP-SVDQFVDAVKQIAL 163
L+YG V+EG + Y + G ++FR + R+ A+ P S+D+ ++A + +
Sbjct: 30 LHYGTSVFEGIRCYDSHKG-PVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIR 88
Query: 164 ANKRWVPPPGKGTLYIRPLL-IGSGPVLGLGPAPEYT--FLAYASPVGNYFKEGS--APL 218
N + YIRPL+ +G +G+ P Y+ + A P G Y + +
Sbjct: 89 KN-------NLTSAYIRPLIFVGDVG-MGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGI 140
Query: 219 NLYIEEEFVRAAPGGA-GGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSS 277
+ + + RAAP KA NY L A+ G+ + + LD + E +
Sbjct: 141 DAMVSS-WNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDV--NGYISEGAG 197
Query: 278 CNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTG 337
N+F VK V+ TP + L GITR ++I++A++ G +V E+V+ + L AD+VF +G
Sbjct: 198 ENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSG 257
Query: 338 TAVVVAPVGSI 348
TA + PV S+
Sbjct: 258 TAAEITPVRSV 268
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 170 bits (433), Expect = 1e-50
Identities = 61/263 (23%), Positives = 96/263 (36%), Gaps = 32/263 (12%)
Query: 105 LNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALA 164
L G G++E DG + R K A + +P P ++ + A +
Sbjct: 43 LTRGDGIFETLLIR---DGHA--CNVRRHGERFKASAALLGLPEPILEDWEKATQMGI-- 95
Query: 165 NKRWVPPPGKGTLYIRPLL-IGSGPVLGLGPAP--------------EYTFLAYASPVGN 209
+ W P G L G GL E+ S G
Sbjct: 96 -ESWYSHPNAGEASCTWTLSRGRSS-TGLASGWLTITPVSSDKLAQREHGVSVMTSSRGY 153
Query: 210 YFKEGSAPLNLYIEEEFV----RAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLD 265
G + E AP G K + YA + AL AKS GF DV++ D
Sbjct: 154 SIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTL-AYAANMAALRYAKSNGFDDVIFTD 212
Query: 266 SVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVD 325
V E ++ + KG+ I TP+ G IL G T+ ++ A + G++ +E+ + +D
Sbjct: 213 G---DRVLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGWRCKEKDLSID 269
Query: 326 ELINADQVFCTGTAVVVAPVGSI 348
+L AD V+ + V +
Sbjct: 270 DLFGADSVWLVSSVRGPVRVTRL 292
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 169 bits (430), Expect = 5e-50
Identities = 77/250 (30%), Positives = 114/250 (45%), Gaps = 18/250 (7%)
Query: 105 LNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSP-SVDQFVDAVKQIAL 163
L+YG GV+EG +AY+T DG +FR + R+ A+ M P + A + +
Sbjct: 52 LHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDVVR 111
Query: 164 ANKRWVPPPGKGTLYIRPLL-IGSGPVLGLGPAPEYTFLA-YASPVGNYFKEGS--APLN 219
NK + Y+RP++ IGS LG+ +A A P G Y E +
Sbjct: 112 ENKL-------ESCYLRPIIWIGSEK-LGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIR 163
Query: 220 LYIEEEFVRAAPGGA-GGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSC 278
+ F R + KA Y + A A + G+ + L LD V E S
Sbjct: 164 VKTSS-FTRHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLLDV--DGYVSEGSGE 220
Query: 279 NIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGT 338
N F+V + TP L+GITR +VI +A++ G +V E+ I DE+ AD+ F TGT
Sbjct: 221 NFFLVNRGKLYTPDLAS-CLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFFTGT 279
Query: 339 AVVVAPVGSI 348
A V P+ +
Sbjct: 280 AAEVTPIREL 289
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 168 bits (428), Expect = 9e-50
Identities = 83/251 (33%), Positives = 114/251 (45%), Gaps = 20/251 (7%)
Query: 105 LNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSP-SVDQFVDAVKQIAL 163
L+YG V+EG +AY T G +FR + R A+ + M P + ++ +A+K++
Sbjct: 29 LHYGTSVFEGIRAYETAKG-PAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVR 87
Query: 164 ANKRWVPPPGKGTLYIRPLL-IGSGPVLGLGPAPEY--TFLAYASPVGNYFKE--GSAPL 218
N G + YIRPL +G+ LG+ P P + A G Y E
Sbjct: 88 RN-------GYRSCYIRPLAWMGAK-ALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGA 139
Query: 219 NLYIEEEFVRAAPGGA-GGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSS 277
L + R G K NY A + A + G + L LD V E S
Sbjct: 140 RLITSS-WARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDE--EGYVAEGSG 196
Query: 278 CNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTG 337
N+F V+ VI + LEGITR SVI IA+D GY+V+ D+L AD+VF TG
Sbjct: 197 ENLFFVRDGVIYALEHSV-NLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTG 255
Query: 338 TAVVVAPVGSI 348
TA V PV I
Sbjct: 256 TAAEVTPVSMI 266
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 163 bits (414), Expect = 4e-48
Identities = 52/263 (19%), Positives = 109/263 (41%), Gaps = 29/263 (11%)
Query: 93 YANIELSPSAAV---LNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSP 149
+++PS + + G+G++E + + ++ R+ A ++ +P
Sbjct: 8 EDKGDMTPSFGIDDRIFLGEGLFETIRVN---SSKP--SFAYMHWERLGNSARQLGIPFE 62
Query: 150 -SVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLL-IGSGPVLGLGPAPEYTFLAYAS-P 206
S D + + + Q + I+ +L G GL + + L + +
Sbjct: 63 ISFDDWFEHLIQKIQKDNL-------YHGGIKAILSGGPAS-RGLAERGQVSQLIFQTFN 114
Query: 207 VGNYFKEGSAPLNLYIEEEFVRAAPGGAGGVKAISNYAP-VLKALIRAKSRGFSDVLYLD 265
P+ L ++R +K++ NY ++ A +A + G D L+ +
Sbjct: 115 YSIQKH----PVRLISIN-WLRDKANPLYQLKSV-NYLEAII-AQRQAIAVGADDALFFN 167
Query: 266 SVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVD 325
+ N +V E + N+F+++ N++ TP IL GITR +I + + V+E +
Sbjct: 168 TEN--HVTETTCANLFLIENNILYTPRVEDGILPGITRARLISHCQQHKMSVQEISLTKK 225
Query: 326 ELINADQVFCTGTAVVVAPVGSI 348
+ +AD VF T + + V S+
Sbjct: 226 RIEDADAVFLTNSLQGIRRVLSL 248
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 158 bits (403), Expect = 2e-46
Identities = 67/247 (27%), Positives = 100/247 (40%), Gaps = 35/247 (14%)
Query: 105 LNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSP-SVDQFVDAVKQIAL 163
+ VYE + Y F + +R+K A+ +P S D+F +K A
Sbjct: 36 KSLQGAVYETLRTY---SRAP--FAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGAD 90
Query: 164 ANKRWVPPPGKGTLYIRPLL-IGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSAPLNLYI 222
K+ V I+ L SG VL SP+ E + + I
Sbjct: 91 EFKQEV--------RIKVYLFPDSGEVL-----------FVFSPLNIPDLE--TGVEVKI 129
Query: 223 EEEFVRAAPGGA-GGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIF 281
R +K + L R + DV+ L V E S N+F
Sbjct: 130 SN-VRRIPDLSTPPALKI-TGR--TDIVLARREIVDCYDVILLGL--NGQVCEGSFSNVF 183
Query: 282 VVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGTAVV 341
+VK + TP+ + IL+GITR +VI++A+ VEERV+ V EL AD++F T T+
Sbjct: 184 LVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEMFLTHTSAG 243
Query: 342 VAPVGSI 348
V PV +
Sbjct: 244 VVPVRRL 250
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 151 bits (383), Expect = 1e-43
Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 25/249 (10%)
Query: 105 LNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALA 164
+G G + + DG++ L + R++ +R+ + Q +K +A
Sbjct: 19 TQFGDGCFTTARVI---DGKVSLLSAHIQ--RLQDACQRLMISCDFWPQLEQEMKTLAAE 73
Query: 165 NKRWVPPPGKGTLYIRPLLI-GSGPVLGLGPAPEY--TFLAYASPVGNYFKEGSA-PLNL 220
+ ++ ++ GSG G T + + ++ + L
Sbjct: 74 QQNG---------VLKVVISRGSGG-RGYSTLNSGPATRILSVTAYPAHYDRLRNEGITL 123
Query: 221 YIEEEFVRAAPGGAGGVKAISNYAP-VLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCN 279
+ G+K + N VL + + L LDS V E + N
Sbjct: 124 ALSPVR-LGRNPHLAGIKHL-NRLEQVL-IRSHLEQTNADEALVLDS--EGWVTECCAAN 178
Query: 280 IFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGTA 339
+F KGNV+ TP + + GI R+ I + YQ+ E ++E + AD++
Sbjct: 179 LFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNAL 238
Query: 340 VVVAPVGSI 348
+ V PV +
Sbjct: 239 MPVMPVCAC 247
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 145 bits (368), Expect = 4e-41
Identities = 49/249 (19%), Positives = 85/249 (34%), Gaps = 26/249 (10%)
Query: 105 LNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALA 164
L YG G++E G + + +R++ G R+ +P + A
Sbjct: 41 LAYGDGLFETLAVR---AGTP--RLLERHLARLEEGCRRLAIP-LDTAALRQELLAFCAA 94
Query: 165 NKRWVPPPGKGTLYIRPLL-IGSGPVLGLGPA--PEYTFLAYASPVGNYFKEGSA-PLNL 220
+ ++ G G G P + SP Y + + L
Sbjct: 95 LGDG---------VAKLIVTRGEGL-RGYAPPAEASPRRILSGSPRPAYPERHWQQGVRL 144
Query: 221 YIEEEFVRAAPGGAGGVKAISNYAP-VLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCN 279
+ A G+K + N VL A G ++ L LD V E N
Sbjct: 145 FACR-TRLAEQPLLAGLKHL-NRLEQVL-ARAEWSDAGHAEGLMLDVHE--RVVEGVFSN 199
Query: 280 IFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGTA 339
+ +V + P + G+ R ++E A G + R + + EL AD+VF +
Sbjct: 200 LLLVLDGTLVAPDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVFLCNSQ 259
Query: 340 VVVAPVGSI 348
+ PV ++
Sbjct: 260 FGIWPVRAL 268
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 143 bits (362), Expect = 8e-41
Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 39/247 (15%)
Query: 105 LNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALA 164
L +G V+ +A GR + + +R++ A + + P + F++ ++ + A
Sbjct: 18 LYHGASVFTTLRAE---GGRP--LWLEEHLARLRRHALALGLSYPGDEAFLEDLEALLRA 72
Query: 165 NKRWVPPPGKGTLYIRPLL-IGSGP-VLGLGPAPEYTFLAYASPVGNYFKEGSAPLNLYI 222
+ +R +G G + P P+ Y +EG + + +
Sbjct: 73 FPKAP--------CLRLRFTVGEGVRLSEARPYAPL-------PLSLY-REG---VRVRL 113
Query: 223 EEEFVRAAPGGAGGVKAISNYAP-VLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIF 281
R P A K NY P L AL A+ G + L LD+ +V + S +
Sbjct: 114 TG--YRVHPDLAR-YKT-GNYLPYRL-ALEEARKEGAFEGLLLDA--FGHVVDGSRTSPL 166
Query: 282 VVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGTAVV 341
+ + + LEGITR V E AR G +VE + + L + G+ V
Sbjct: 167 LFREGTLYLLEG---GLEGITREKVAEAARGLGLRVERGLFRPEGL--RGHLLLAGSGVG 221
Query: 342 VAPVGSI 348
+ PV
Sbjct: 222 LLPVRPP 228
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 143 bits (364), Expect = 1e-40
Identities = 64/262 (24%), Positives = 98/262 (37%), Gaps = 52/262 (19%)
Query: 105 LNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSP-SVDQFVDAVKQIAL 163
+G GVYE K Y +G + F + + R+ AE++ + P + D+F + ++
Sbjct: 24 YQFGDGVYEVVKVY---NGEM--FTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVE 78
Query: 164 ANKRWVPPPGKGTLYIRPLL-IGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSAPLNLYI 222
N T +I + G+ P F E + +
Sbjct: 79 KN-------ELNTGHIYFQVTRGTSP-RAH-----------------QFPENTVKPVIIG 113
Query: 223 -EEEFVRAAPGGAGGVKAIS--------------NY-APVLKALIRAKSRGFSDVLYLDS 266
+E R GVKA N VL A A +G + + L
Sbjct: 114 YTKENPRPLENLEKGVKATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAI-LHR 171
Query: 267 VNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDE 326
N V E SS N+F +K ++ T N IL+GITR VI A + V+E E
Sbjct: 172 NN--TVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHE 229
Query: 327 LINADQVFCTGTAVVVAPVGSI 348
+ D++F T T + PV I
Sbjct: 230 ALKMDELFVTSTTSEITPVIEI 251
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 103 bits (259), Expect = 4e-26
Identities = 38/246 (15%), Positives = 71/246 (28%), Gaps = 38/246 (15%)
Query: 105 LNYGQGVYEGTKAYRTEDGRILLFRPD-LNASRMKIGAERMCMPSPSVDQFVDAVKQIAL 163
+ E R + G L L R+ A + + + +
Sbjct: 12 DTADFELIETM---RWQPGTSFLRFDRHLA--RLYGSAAELGFA-CDPQRIAEVLSDALD 65
Query: 164 ANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSAPLNLYIE 223
+ + R L + P Y LA L +
Sbjct: 66 GAR--------TAMRTR-LALARNGDATASAQP-YEPLAA-----------DKVWILRLA 104
Query: 224 EEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVV 283
+ K S A +VL + R + E + N+F
Sbjct: 105 RTR-LDSQNTLLRHKT-SRRQLYTHARSEYLVTQADEVLLANE--RGEICEGTITNVFAD 160
Query: 284 KGN-VISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTGTAVVV 342
G+ V++TP + +L G+ R +++ R EE + D+L +A +F + +
Sbjct: 161 FGDGVLATPRLDCGLLPGVLRAELLDEGR-----AEEAIYSYDDLKSAKALFVGNSLRGL 215
Query: 343 APVGSI 348
P +
Sbjct: 216 IPAKLV 221
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for
structural genomics, protein structure initiative,
PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Length = 194
Score = 75.1 bits (185), Expect = 3e-16
Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 51/224 (22%)
Query: 119 RTEDGRILLFRPDLNASRMKIGAERMCMPSP-SVDQFVDAVKQIALANKRWVPPPGKGTL 177
E G+ + R + + + + +G +
Sbjct: 12 LIEQGQAKNI--SYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHTALFT-----HREGLI 64
Query: 178 YIRPLLIGSGPVLGLGPAPEYTFLA----YASPVGNYFKEGSAPLNLYIEEEFVRAAPGG 233
R VL P + + + + K
Sbjct: 65 RCRIDYNHHDYVLQCFPYQQKVYRTFKPVFCDHIDYSLK--------------------- 103
Query: 234 AGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPAT 293
+ +L L + +++ + + V + S N+ + N TP
Sbjct: 104 -------FSDRTLLNNL-LKQKEECDEIMI---IRQGKVTDCSIGNLIFRQNNQWITPDK 152
Query: 294 NGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTG 337
+LEG R ++E ++ R I ++L +++
Sbjct: 153 P--LLEGTQRAKLLEQ-----KKIIAREIFFEDLAQYEEIRLIN 189
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 2e-07
Identities = 65/421 (15%), Positives = 120/421 (28%), Gaps = 147/421 (34%)
Query: 19 PASS-SLTSK-LGACYFCTSHVASLQQPGKPSVFSS---------DDEY----------A 57
P + L K LG +V+SL +P K F ++ Y A
Sbjct: 54 PTTPAELVGKFLG-------YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 58 DLDWDNLGFSIKPAD----YMYTMKCSKHENFKQGQ--LSRYANIELSPSAAVLNYGQGV 111
L +N +K + Y+ +K K+ L R + A+ GQG
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-GQGN 165
Query: 112 YEGTKAYRTEDGRIL--LFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQI--ALANKR 167
+ Y E L L++ V + + L
Sbjct: 166 TD---DYFEE----LRDLYQ----------------TYHVLVGDLIKFSAETLSELIRTT 202
Query: 168 WVPPPGKGTLYIRPLLIGS---GPVLGLGPAPEYTFLAYASPV----------GNYF--- 211
++ + L I P P+ +L P+ +Y
Sbjct: 203 LDAEK----VFTQGLNILEWLENP----SNTPDKDYLLSI-PISCPLIGVIQLAHYVVTA 253
Query: 212 -KEGSAPLNLYIEEEFVRAAPGGAGGV---KAIS----------NYAPVLKAL----IRA 253
G P L +++ A G + G+ AI+ + + L +R
Sbjct: 254 KLLGFTPGELR---SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 254 K----SRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIE- 308
+ + DS+ +N E V S + + +T+ V +
Sbjct: 311 YEAYPNTSLPPSILEDSL--ENNEGVPSP-MLSIS---------------NLTQEQVQDY 352
Query: 309 IARDYGYQVEERVIPVDELINADQVF-CTGTAV-----------VVAPVGSITYQNKRVE 356
+ + + + + + L+N + +G AP G Q+ R+
Sbjct: 353 VNKTNSHLPAGKQVEI-SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD--QS-RIP 408
Query: 357 F 357
F
Sbjct: 409 F 409
Score = 42.7 bits (100), Expect = 2e-04
Identities = 59/344 (17%), Positives = 98/344 (28%), Gaps = 129/344 (37%)
Query: 42 QQPG------KPS-----VFSSDDEYADLDW-DNLGFSIKPADYMYTMKCSKHENFKQGQ 89
Q+ G K S V+ + AD + D GFSI + + H ++G+
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVW---NR-ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 90 LSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSP 149
R NY ++E + + +I ++N S
Sbjct: 1683 RIRE------------NYSAMIFETIVDGKLKTEKIF---KEINEHSTSY-----TFRSE 1722
Query: 150 SVD----QFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGP--VL---GLGPAPEYTF 200
QF Q AL L+ L GL PA
Sbjct: 1723 KGLLSATQFT----QPAL------------------TLMEKAAFEDLKSKGLIPADAT-- 1758
Query: 201 LAYA--SPVGNYFKEGSAPLNLYIEEEFVRAAPGGAGGVKAISNYAPVLKALIR-AKSRG 257
+A S +G Y +A L A+ +S +++L+ RG
Sbjct: 1759 --FAGHS-LGEY----AA-L----------ASLAD-----VMS-----IESLVEVVFYRG 1790
Query: 258 --FSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIE-IARDYG 314
+ D + R N + + N P + V+E + + G
Sbjct: 1791 MTMQVAVPRDELGRSNY-GMIAIN-----------PGRVAASFSQEALQYVVERVGKRTG 1838
Query: 315 YQVEERVIPVDELI---NAD--QVFCTGTAVVVAPVGSITYQNK 353
+ VE I N + Q G + V ++ K
Sbjct: 1839 WLVE---------IVNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Score = 40.4 bits (94), Expect = 0.001
Identities = 38/245 (15%), Positives = 63/245 (25%), Gaps = 103/245 (42%)
Query: 189 VLGLGPAPEYTFLAYASPVGNYFK---EGSAPLNLYIEEEFVRAAPGGAGGVKAI----- 240
L + T + + NY P + RA G + AI
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 241 -------------SNYAPVLKALIRAK------------------SRGFS---------- 259
Y ++ LI+ ++G +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 260 --DVLYLDSVNRKNVEEVSSCNI--------FVVKGNVIS-TPATNGTILEGITRRSVIE 308
D YL S+ + SC + +VV ++ TP + L+G T S
Sbjct: 225 TPDKDYLLSI------PI-SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS--- 274
Query: 309 IARDYGYQVEERVIPVDELINADQVFCTGTAVVVAPVGSIT--YQNK----RVEFKTGSR 362
+ ++ TAV +A S + + V F G R
Sbjct: 275 ----------QGLV---------------TAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 363 SVYQE 367
E
Sbjct: 310 C--YE 312
Score = 30.0 bits (67), Expect = 1.7
Identities = 19/78 (24%), Positives = 23/78 (29%), Gaps = 24/78 (30%)
Query: 118 YRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQ-FVDAVKQIALANKRWVPPPGKGT 176
Y T DG DL I +ER+ D V +W
Sbjct: 460 YDTFDGS------DLRVLSGSI-SERIV------DCIIRLPV--------KWETTTQFKA 498
Query: 177 LYIRPLLIGSGPVLGLGP 194
+I L G G GLG
Sbjct: 499 THI--LDFGPGGASGLGV 514
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.024
Identities = 38/240 (15%), Positives = 72/240 (30%), Gaps = 67/240 (27%)
Query: 82 HENFKQGQLSRYANIELSP---SAAVLNYG-QGVYEGTK-AYRTEDGRILLFRPD-LNAS 135
H +F+ G+ +Y ++ A V N+ + V + K E+ ++ D ++ +
Sbjct: 6 HMDFETGEH-QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 136 RMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPA 195
V +FV+ V +I N +++ P I+ P+
Sbjct: 65 LRLFWTLLS-KQEEMVQKFVEEVLRI---NYKFLMSP------IKTEQRQ--------PS 106
Query: 196 PEYTFLAYASPVGNYFKEGS--APLNLYIEEEF---------VRAAPG----GAGGVKAI 240
Y + + A N+ + + +R A G G
Sbjct: 107 MMTR--MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--- 161
Query: 241 SNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVK-GNVISTPATNGTILE 299
K+ + LD V+ IF + N S T+LE
Sbjct: 162 ------------GKT-----WVALDVCLSYKVQCKMDFKIFWLNLKNCNSP----ETVLE 200
Score = 31.7 bits (71), Expect = 0.49
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 25/102 (24%)
Query: 24 LTSKL----GACYFCTSHVASLQQPG--KPSVFSSDDEYADLDWDNLGFSIKPADYMYTM 77
L K+ A S + +LQQ KP + +D +Y L L F K + +
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI-- 560
Query: 78 KCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYR 119
CSK+ + + A++ + ++E +A++
Sbjct: 561 -CSKYTDLLR--------------IALMAEDEAIFE--EAHK 585
>4efd_A Aminopeptidase; structural genomics, structural genomics
consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei
brucei}
Length = 522
Score = 30.1 bits (68), Expect = 1.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 65 GFSIKPADYMYTMKC 79
G ++KPADYM MK
Sbjct: 298 GLALKPADYMKLMKH 312
>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease,
structural genomics; 2.70A {Staphylococcus aureus subsp}
Length = 515
Score = 30.0 bits (68), Expect = 1.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 65 GFSIKPADYMYTMKC 79
G+SIK + M TMK
Sbjct: 291 GYSIKTKNGMATMKF 305
>3lop_A Substrate binding periplasmic protein; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.55A
{Ralstonia solanacearum}
Length = 364
Score = 29.6 bits (67), Expect = 1.5
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 300 GITRRSVIEIARDYGYQVEERVIPVDELINADQVF----CTGTAVVVAPVGSITYQNKRV 355
GI ++ +ARD ++E+ V V ++ D GTA V A + R+
Sbjct: 41 GINGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVVGTANVEALMREGVLAEARL 100
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease,
exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A
{Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Length = 562
Score = 29.8 bits (68), Expect = 1.6
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 304 RS---VIEIARDYGY-QVEERVIPVDEL--INADQV--FCTGT 338
RS IA + GY +V++R+ ++E+ + QV TG+
Sbjct: 273 RSMLKFSRIALELGYLKVKDRLYTLEEVKDLPDHQVLILATGS 315
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein
structure initiative, NEW YORK SGX research center
structural genomics; 1.85A {Caenorhabditis elegans} PDB:
2hb6_A
Length = 491
Score = 29.4 bits (66), Expect = 2.0
Identities = 6/15 (40%), Positives = 6/15 (40%)
Query: 65 GFSIKPADYMYTMKC 79
G IK M MK
Sbjct: 260 GLQIKTKTGMPNMKR 274
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding,
proteas; HET: BES; 1.50A {Pseudomonas putida} PDB:
3h8e_A 3h8f_A*
Length = 497
Score = 29.6 bits (67), Expect = 2.0
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 65 GFSIKPADYMYTMKC 79
G S+KP M MK
Sbjct: 275 GISLKPGAGMDEMKY 289
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA,
xanthomonas oryzae PV. ORYZ KACC10331, hydrolase,
manganese; 2.60A {Xanthomonas oryzae PV}
Length = 490
Score = 29.2 bits (66), Expect = 2.1
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 65 GFSIKPADYMYTMKC 79
G ++K + MK
Sbjct: 270 GVNLKTQGGIEEMKY 284
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid
binding protein; branched amino acid, PSI-II, NYSGXRC,
structural genomics; 2.40A {Thermus thermophilus}
Length = 392
Score = 29.3 bits (66), Expect = 2.2
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 300 GITRRSVIEIARDYGYQVEERVIPVDELINADQVF-----CTGTAVVVAPV 345
+ + RD Y +E ++ ++ TG + + P+
Sbjct: 43 LVPGVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLSYATGANLQLKPL 93
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta sandwich;
HET: MSE; 2.70A {Francisella tularensis subsp}
Length = 486
Score = 29.2 bits (66), Expect = 2.3
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 65 GFSIKPADYMYTMKC 79
G IK A M +MK
Sbjct: 259 GICIKQAAGMDSMKM 273
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962
aminopeptidase, hydrolase, manganese, metal-binding,
protea structural genomics; HET: PGE PG4; 1.80A
{Coxiella burnetii}
Length = 482
Score = 29.3 bits (66), Expect = 2.3
Identities = 6/15 (40%), Positives = 6/15 (40%)
Query: 65 GFSIKPADYMYTMKC 79
G IK M MK
Sbjct: 258 GLDIKTPGGMLLMKK 272
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and
histindinol phosphatase(PHP)-like phosphatase,
hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Length = 262
Score = 28.8 bits (64), Expect = 2.3
Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 14/117 (11%)
Query: 5 DGAACLRNLIHLFRPASSSLTSKLGACYFCTSHVASLQQPGKPSVFSSDDEY--ADLDWD 62
DGA + I + R A + T H + +P+ + L +
Sbjct: 14 DGAGDSADSIEMARAAVRQGIRTI----IATPHHNNGVYKNEPAAVREAADQLNKRLIKE 69
Query: 63 NLGFSIKP-ADYMYTMKCSKHENFKQGQL-----SRYANIELSPSAAVLNYGQGVYE 113
++ + P + + ++ + QL ++Y IE Q Y+
Sbjct: 70 DIPLHVLPGQEIRIYGEVE--QDLAKRQLLSLNDTKYILIEFPFDHVPRYAEQLFYD 124
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A
{Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Length = 503
Score = 29.2 bits (66), Expect = 2.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 62 DNLGFSIKPADYMYTMKC 79
D+ G SIKP++ M MK
Sbjct: 275 DSGGISIKPSEGMDEMKY 292
>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide
synthase inhibitor; HET: CIR; 1.8A {Pseudomonas
aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A*
Length = 255
Score = 28.5 bits (63), Expect = 3.1
Identities = 14/59 (23%), Positives = 17/59 (28%), Gaps = 12/59 (20%)
Query: 273 EEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINAD 331
EE + N V VI T E GY+V E + E D
Sbjct: 199 EESYAANCIWVNERVIMPAGYPRT----------REKIARLGYRVIE--VDTSEYRKID 245
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC,
substrate binding P structural genomics, protein
structure initiative; 2.00A {Aeropyrum pernix}
Length = 391
Score = 28.2 bits (63), Expect = 4.2
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 5/57 (8%)
Query: 294 NGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVF-----CTGTAVVVAPV 345
G + R ++ I RDY Y E + V T ++
Sbjct: 38 KGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIGWGTADTEKLSDQ 94
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 28.1 bits (62), Expect = 4.7
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 292 ATNGTILEGITRRSVIEIARDYGYQVEERVI--PVDELI 328
TN R + A++YG++VE +V P EL+
Sbjct: 85 DTNLNPER---RLAWETFAKEYGWKVEHKVFDVPWTELV 120
>1d5y_A ROB transcription factor; protein-DNA complex, DNA,
transcription/DNA complex; HET: DNA; 2.70A {Escherichia
coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Length = 292
Score = 27.9 bits (62), Expect = 4.8
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 302 TRRSVIEIARDYGYQ 316
T R +++IA Y +
Sbjct: 67 TARPILDIALQYRFD 81
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'-
D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP
*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator;
HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8
PDB: 1xs9_A
Length = 129
Score = 27.2 bits (61), Expect = 4.8
Identities = 3/15 (20%), Positives = 9/15 (60%)
Query: 302 TRRSVIEIARDYGYQ 316
+ ++ +A YG++
Sbjct: 75 SNEPILYLAERYGFE 89
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase
(A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3
c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A
1bll_E* 2j9a_A* 2ewb_A*
Length = 484
Score = 27.7 bits (62), Expect = 7.5
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 65 GFSIKPADYMYTMKC 79
G SIK A M M+
Sbjct: 258 GISIKAAANMDLMRA 272
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 26.3 bits (58), Expect = 7.9
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 294 NGTILEGITRRSVIEIARDYGYQVEERVIPVDE 326
NG ++ V+E+ R G V V+ D
Sbjct: 66 NGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDS 98
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 26.5 bits (58), Expect = 8.3
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 294 NGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQ 332
NG + + R V+ + R G + +V+ V + D+
Sbjct: 93 NGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDE 131
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,712,507
Number of extensions: 352796
Number of successful extensions: 954
Number of sequences better than 10.0: 1
Number of HSP's gapped: 908
Number of HSP's successfully gapped: 50
Length of query: 367
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 272
Effective length of database: 4,049,298
Effective search space: 1101409056
Effective search space used: 1101409056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)