RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 036241
(367 letters)
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 216 bits (551), Expect = 4e-68
Identities = 96/316 (30%), Positives = 161/316 (50%), Gaps = 13/316 (4%)
Query: 59 LDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAY 118
+ L F D+M ++ + + Q ++ + N+ L P+++ L+Y ++EG KA+
Sbjct: 21 GPGEPLVFGKTFTDHMLMVEWNDKG-WGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAF 79
Query: 119 RTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLY 178
+ +D ++ LFRP LN RM A R+C+PS + ++ ++++ +K WVP +LY
Sbjct: 80 KGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLY 139
Query: 179 IRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSA-PLNLYIEEEFVRAAPGGAGGV 237
+RP+LIG+ P LG+ PVG YF GS P++L + F+RA GG G
Sbjct: 140 VRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNY 199
Query: 238 KAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVVKGN----VISTPAT 293
K NY P + A RG VL+L + + E + + TP
Sbjct: 200 KLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPL 259
Query: 294 NGTILEGITRRSVIEIARDYG-YQVEERVIPVDELINA------DQVFCTGTAVVVAPVG 346
NG IL G+ R+S++++A+ +G ++V ER I + +L+ A +VF +GTA V PV
Sbjct: 260 NGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVH 319
Query: 347 SITYQNKRVEFKTGSR 362
I Y+++ + T
Sbjct: 320 RILYKDRNLHIPTMEN 335
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 156 bits (394), Expect = 1e-45
Identities = 69/265 (26%), Positives = 121/265 (45%), Gaps = 13/265 (4%)
Query: 88 GQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMP 147
G++ R+ + ++ + L+YG V+EG + Y + G ++ FR + R+ A+ P
Sbjct: 9 GEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHMQRLHDSAKIYRFP 67
Query: 148 SPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTF--LAYAS 205
+ A + + + YIRPL+ +G+ P Y+ + A
Sbjct: 68 VSQSIDELME------ACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAF 121
Query: 206 PVGNYFKEGSAPLNL-YIEEEFVRAAPGGAGGVKAIS-NYAPVLKALIRAKSRGFSDVLY 263
P G Y + + + + RAAP NY L A+ G+ + +
Sbjct: 122 PWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIA 181
Query: 264 LDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIP 323
LD + E + N+F VK V+ TP + L GITR ++I++A++ G +V E+V+
Sbjct: 182 LD--VNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLS 239
Query: 324 VDELINADQVFCTGTAVVVAPVGSI 348
+ L AD+VF +GTA + PV S+
Sbjct: 240 RESLYLADEVFMSGTAAEITPVRSV 264
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 109 bits (272), Expect = 3e-28
Identities = 53/262 (20%), Positives = 92/262 (35%), Gaps = 18/262 (6%)
Query: 88 GQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMP 147
Q+ + +++ +G GVYE K Y +G + F + + R+ AE++ +
Sbjct: 7 DQIVKDEEVKIDKEDRGYQFGDGVYEVVKVY---NGEM--FTVNEHIDRLYASAEKIRIT 61
Query: 148 SPSVDQFV-DAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASP 206
P + ++ N+ G +Y + S + +
Sbjct: 62 IPYTKDKFHQLLHELVEKNELN-----TGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTK 116
Query: 207 VGNYFKEGSAPLNLYIEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDS 266
E E +R + N + A A +G + +
Sbjct: 117 ENPRPLENLEKGVKATFVEDIRWLRCDIKSL----NLLGAVLAKQEAHEKGCYEAILHR- 171
Query: 267 VNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDE 326
V E SS N+F +K ++ T N IL+GITR VI A + V+E E
Sbjct: 172 --NNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHE 229
Query: 327 LINADQVFCTGTAVVVAPVGSI 348
+ D++F T T + PV I
Sbjct: 230 ALKMDELFVTSTTSEITPVIEI 251
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
[TaxId: 562]}
Length = 269
Score = 99.3 bits (246), Expect = 1e-24
Identities = 45/264 (17%), Positives = 86/264 (32%), Gaps = 19/264 (7%)
Query: 98 LSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDA 157
L+ S +G G + + DG++ + R++ +R+ + Q
Sbjct: 12 LAVSDRATQFGDGCFTTARVI---DGKV--SLLSAHIQRLQDACQRLMISCDFWPQLEQE 66
Query: 158 VKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFLAYASPVGNYFKEGSAP 217
K G L + G + T + + ++
Sbjct: 67 -------MKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNE 119
Query: 218 LNLYIEEEFVRAAPGGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSS 277
G+K + N + + + L LD + V E +
Sbjct: 120 GITLALSPVRLGRNPHLAGIKHL-NRLEQVLIRSHLEQTNADEALVLD--SEGWVTECCA 176
Query: 278 CNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGYQVEERVIPVDELINADQVFCTG 337
N+F KGNV+ TP + + GI R+ I + YQ+ E ++E + AD++
Sbjct: 177 ANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICN 236
Query: 338 TAVVVAPVGSITYQNKRVEFKTGS 361
+ V PV + V F + +
Sbjct: 237 ALMPVMPVCAC----GDVSFSSAT 256
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 26.7 bits (58), Expect = 4.9
Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 256 RGFSDVLYLDSVNRKNVEEVSSCNIFVVKGNVISTPATNGTILEGITRRSVIEIARDYGY 315
F +++ +V +N++ N+ G + S I +G+ R ++ +
Sbjct: 317 NRFGNIVKNLTVFPENMKR----NMDRTLGLIYSQRVLLALIDKGMAREEAYDVVQPRAM 372
Query: 316 QVEERVIPVDELINAD 331
+ E+ + L+ AD
Sbjct: 373 EAWEKQVAFKSLVEAD 388
>d1b77a1 d.131.1.2 (A:1-110) gp45 sliding clamp {Bacteriophage RB69
[TaxId: 12353]}
Length = 110
Score = 24.7 bits (54), Expect = 8.5
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 270 KNVEEVSSCNIFVVKGNVISTPATNGTIL 298
KN ++S I + +G I T A NGT
Sbjct: 12 KNFASINS-GILLSQGKFIMTRAVNGTTY 39
>d1dzfa1 c.52.3.1 (A:5-143) Eukaryotic RPB5 N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 139
Score = 25.2 bits (55), Expect = 8.8
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 302 TRRSVIEIARDYGYQVEERVI 322
R+V E+ +D GY + + +
Sbjct: 11 AFRTVKEMVKDRGYFITQEEV 31
>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity
protein par6 (Par-6B) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 98
Score = 24.5 bits (53), Expect = 9.6
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 294 NGTILEGITRRSVIEIARDYGYQVEERVIPVD 325
NG + G T V ++ + V P +
Sbjct: 67 NGIEVAGKTLDQVTDMMVANSSNLIITVKPAN 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0457 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,370,850
Number of extensions: 65282
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 8
Length of query: 367
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,213,086
Effective search space: 339664080
Effective search space used: 339664080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)