Query 036242
Match_columns 330
No_of_seqs 179 out of 836
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 10:49:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4293 Predicted membrane pro 100.0 8.3E-35 1.8E-39 285.0 2.0 309 1-312 47-392 (403)
2 cd08760 Cyt_b561_FRRS1_like Eu 100.0 2E-30 4.4E-35 230.3 17.2 174 112-289 3-191 (191)
3 smart00665 B561 Cytochrome b-5 99.9 6.4E-25 1.4E-29 183.2 10.0 120 139-260 1-129 (129)
4 PF03188 Cytochrom_B561: Eukar 99.9 3.6E-22 7.9E-27 167.8 11.3 123 139-261 1-131 (137)
5 cd08554 Cyt_b561 Eukaryotic cy 99.9 7.3E-22 1.6E-26 165.0 9.9 122 137-260 2-131 (131)
6 cd08766 Cyt_b561_ACYB-1_like P 99.8 1.3E-20 2.9E-25 159.2 10.0 128 132-262 3-138 (144)
7 cd08764 Cyt_b561_CG1275_like N 99.8 8E-20 1.7E-24 163.6 12.4 167 134-303 21-207 (214)
8 cd08761 Cyt_b561_CYB561D2_like 99.8 1E-19 2.3E-24 160.6 11.9 129 134-262 18-157 (183)
9 PLN02351 cytochromes b561 fami 99.8 2E-19 4.3E-24 162.3 12.3 153 135-291 48-221 (242)
10 cd08762 Cyt_b561_CYBASC3 Verte 99.8 2.1E-19 4.6E-24 155.8 10.0 128 135-262 33-168 (179)
11 cd08765 Cyt_b561_CYBRD1 Verteb 99.8 3E-19 6.6E-24 151.9 9.7 129 134-262 9-145 (153)
12 PLN02810 carbon-monoxide oxyge 99.8 8.9E-19 1.9E-23 156.9 12.8 154 133-289 43-215 (231)
13 PLN02680 carbon-monoxide oxyge 99.8 1.2E-18 2.5E-23 157.2 12.3 157 132-291 42-218 (232)
14 cd08763 Cyt_b561_CYB561 Verteb 99.8 1.7E-18 3.7E-23 146.3 10.0 126 135-262 5-138 (143)
15 KOG1619 Cytochrome b [Energy p 99.7 3.6E-18 7.7E-23 152.7 9.0 127 134-262 52-186 (245)
16 smart00664 DoH Possible catech 99.7 7.3E-16 1.6E-20 131.0 14.2 95 2-100 5-100 (148)
17 PF03351 DOMON: DOMON domain; 99.6 7.4E-15 1.6E-19 120.8 14.3 97 2-100 6-103 (124)
18 PF04526 DUF568: Protein of un 99.3 1.3E-11 2.8E-16 98.1 9.4 80 39-118 1-101 (101)
19 PF10348 DUF2427: Domain of un 98.8 9.3E-09 2E-13 82.7 7.3 83 132-226 13-102 (105)
20 cd00241 CDH_cytochrome Cellobi 98.3 3.7E-06 8E-11 74.1 9.5 75 13-92 39-115 (184)
21 KOG3568 Dopamine beta-monooxyg 98.1 3.4E-06 7.4E-11 82.5 5.9 93 2-100 46-138 (603)
22 PF13301 DUF4079: Protein of u 96.9 0.0067 1.5E-07 53.2 9.5 60 200-263 112-172 (175)
23 cd08760 Cyt_b561_FRRS1_like Eu 96.8 0.0096 2.1E-07 52.7 9.5 96 164-264 32-128 (191)
24 cd08554 Cyt_b561 Eukaryotic cy 96.7 0.0043 9.4E-08 51.5 6.3 94 168-263 2-95 (131)
25 smart00665 B561 Cytochrome b-5 96.6 0.011 2.5E-07 48.8 8.1 94 170-265 1-95 (129)
26 PF03188 Cytochrom_B561: Eukar 96.3 0.02 4.3E-07 47.6 7.8 92 170-263 1-94 (137)
27 cd08761 Cyt_b561_CYB561D2_like 96.2 0.015 3.1E-07 51.3 6.8 97 164-262 17-116 (183)
28 cd08763 Cyt_b561_CYB561 Verteb 96.0 0.051 1.1E-06 46.1 8.9 95 166-263 5-100 (143)
29 cd08764 Cyt_b561_CG1275_like N 95.9 0.046 1E-06 49.4 8.6 98 164-262 20-118 (214)
30 cd08766 Cyt_b561_ACYB-1_like P 95.5 0.11 2.3E-06 44.2 8.8 93 165-261 5-98 (144)
31 PLN02680 carbon-monoxide oxyge 94.3 0.25 5.3E-06 45.2 8.4 93 166-262 45-138 (232)
32 PF10348 DUF2427: Domain of un 94.3 0.27 5.8E-06 39.5 7.7 88 163-261 13-101 (105)
33 cd08762 Cyt_b561_CYBASC3 Verte 94.1 0.51 1.1E-05 41.5 9.7 96 164-263 31-130 (179)
34 PLN02351 cytochromes b561 fami 93.1 0.99 2.1E-05 41.5 10.1 119 167-290 50-179 (242)
35 PF00033 Cytochrom_B_N: Cytoch 92.6 0.14 3.1E-06 44.2 3.9 94 169-262 10-127 (188)
36 cd08765 Cyt_b561_CYBRD1 Verteb 91.8 1.6 3.4E-05 37.5 9.3 98 164-263 8-107 (153)
37 PLN02810 carbon-monoxide oxyge 91.5 1.5 3.3E-05 40.0 9.3 93 165-261 44-137 (231)
38 PF08507 COPI_assoc: COPI asso 91.2 1.9 4.1E-05 36.0 9.0 76 205-290 33-108 (136)
39 PF13172 PepSY_TM_1: PepSY-ass 89.9 0.49 1.1E-05 29.8 3.3 32 233-264 1-32 (34)
40 PF10856 DUF2678: Protein of u 89.2 1.4 3E-05 35.8 6.2 71 204-280 30-104 (118)
41 COG5658 Predicted integral mem 85.0 2.5 5.3E-05 38.0 6.0 60 232-291 40-99 (204)
42 PF13630 SdpI: SdpI/YhfL prote 84.2 2 4.3E-05 31.7 4.4 33 232-264 18-50 (76)
43 PF13706 PepSY_TM_3: PepSY-ass 84.2 1.9 4.1E-05 27.8 3.6 29 234-262 1-29 (37)
44 PF00033 Cytochrom_B_N: Cytoch 83.1 6.8 0.00015 33.5 8.0 126 135-260 7-172 (188)
45 PRK10179 formate dehydrogenase 83.1 3.8 8.3E-05 37.0 6.6 29 235-263 107-135 (217)
46 KOG1619 Cytochrome b [Energy p 83.0 11 0.00023 34.7 9.3 92 132-224 84-184 (245)
47 PF13301 DUF4079: Protein of u 82.1 10 0.00022 33.3 8.7 116 138-265 4-141 (175)
48 PF10067 DUF2306: Predicted me 80.4 1.4 3.1E-05 35.0 2.5 30 234-263 2-31 (103)
49 PRK11513 cytochrome b561; Prov 79.5 6.8 0.00015 34.2 6.7 27 203-229 43-69 (176)
50 PF10951 DUF2776: Protein of u 78.8 3.3 7.1E-05 39.1 4.6 82 172-253 155-241 (347)
51 PF01292 Ni_hydr_CYTB: Prokary 76.6 28 0.0006 29.7 9.7 54 169-223 8-64 (182)
52 COG3038 CybB Cytochrome B561 [ 76.4 18 0.0004 31.9 8.5 27 203-229 48-74 (181)
53 PF13703 PepSY_TM_2: PepSY-ass 76.0 8.9 0.00019 29.3 5.8 36 226-262 50-85 (88)
54 PF11044 TMEMspv1-c74-12: Plec 75.3 1.4 3.1E-05 29.4 0.9 28 267-294 2-30 (49)
55 PRK05771 V-type ATP synthase s 72.6 38 0.00082 35.7 11.2 95 165-260 387-498 (646)
56 PF01794 Ferric_reduct: Ferric 69.4 5.3 0.00012 31.8 3.2 49 208-257 1-53 (125)
57 COG4244 Predicted membrane pro 69.3 26 0.00056 30.3 7.4 29 163-191 43-71 (160)
58 TIGR02125 CytB-hydogenase Ni/F 68.1 24 0.00051 31.2 7.5 61 203-263 50-138 (211)
59 PF01292 Ni_hydr_CYTB: Prokary 67.3 60 0.0013 27.5 9.7 47 135-182 5-57 (182)
60 TIGR01583 formate-DH-gamm form 67.1 49 0.0011 29.4 9.3 29 235-263 102-130 (204)
61 TIGR02901 QoxD cytochrome aa3 64.3 57 0.0012 25.6 8.0 70 171-251 9-81 (94)
62 PF03929 PepSY_TM: PepSY-assoc 61.8 13 0.00029 22.2 3.1 25 237-261 1-25 (27)
63 PF04238 DUF420: Protein of un 60.1 1E+02 0.0022 25.7 9.7 27 237-263 77-103 (133)
64 PF12794 MscS_TM: Mechanosensi 59.7 33 0.00073 33.2 7.3 83 165-252 120-208 (340)
65 TIGR00910 2A0307_GadC glutamat 58.5 17 0.00038 37.0 5.3 12 248-259 412-423 (507)
66 COG2717 Predicted membrane pro 58.3 59 0.0013 29.4 8.0 129 139-280 50-185 (209)
67 PRK05419 putative sulfite oxid 58.2 1.2E+02 0.0026 27.1 10.1 42 236-281 145-186 (205)
68 PF10361 DUF2434: Protein of u 57.8 42 0.00091 31.8 7.1 96 204-299 45-153 (296)
69 CHL00070 petB cytochrome b6 56.2 37 0.0008 30.8 6.4 85 179-268 45-144 (215)
70 PF03729 DUF308: Short repeat 53.3 25 0.00054 25.0 4.1 69 177-255 2-70 (72)
71 PRK03735 cytochrome b6; Provis 52.3 40 0.00088 30.7 6.1 85 179-268 53-152 (223)
72 PF10856 DUF2678: Protein of u 52.1 73 0.0016 26.0 6.7 56 169-228 29-85 (118)
73 COG3125 CyoD Heme/copper-type 50.5 94 0.002 25.2 7.2 78 168-256 17-97 (111)
74 PF09990 DUF2231: Predicted me 50.1 1E+02 0.0022 24.1 7.4 46 173-218 7-56 (104)
75 PHA02898 virion envelope prote 48.3 38 0.00083 26.2 4.4 61 242-302 15-78 (92)
76 PF15330 SIT: SHP2-interacting 47.7 9.2 0.0002 30.8 1.0 30 274-303 4-33 (107)
77 TIGR00353 nrfE c-type cytochro 47.5 3.6E+02 0.0077 28.3 13.3 57 135-193 115-177 (576)
78 cd00284 Cytochrome_b_N Cytochr 46.3 72 0.0016 28.5 6.6 85 179-268 34-133 (200)
79 PRK10582 cytochrome o ubiquino 45.0 1.6E+02 0.0035 23.7 7.8 66 171-247 18-86 (109)
80 PF06422 PDR_CDR: CDR ABC tran 43.5 43 0.00094 26.5 4.3 26 267-292 50-75 (103)
81 COG3038 CybB Cytochrome B561 [ 43.4 1.2E+02 0.0027 26.7 7.5 55 210-264 17-73 (181)
82 COG4329 Predicted membrane pro 42.5 49 0.0011 27.7 4.5 48 174-224 64-112 (160)
83 MTH00086 CYTB cytochrome b; Pr 42.0 90 0.0019 30.5 7.1 80 182-268 34-128 (355)
84 PF00558 Vpu: Vpu protein; In 40.5 53 0.0012 25.1 4.1 13 308-320 49-61 (81)
85 TIGR02847 CyoD cytochrome o ub 39.9 1.9E+02 0.004 22.8 7.7 67 171-248 7-76 (96)
86 KOG4671 Brain cell membrane pr 39.7 90 0.002 27.6 5.9 63 165-230 77-139 (201)
87 PF13789 DUF4181: Domain of un 39.4 69 0.0015 25.6 5.0 58 235-294 25-82 (110)
88 PF01794 Ferric_reduct: Ferric 39.3 43 0.00092 26.4 3.8 37 204-243 78-116 (125)
89 PF15099 PIRT: Phosphoinositid 39.2 27 0.00058 28.9 2.5 59 235-294 44-104 (129)
90 KOG4293 Predicted membrane pro 39.0 9.6 0.00021 37.9 -0.2 109 135-244 279-396 (403)
91 TIGR03145 cyt_nit_nrfE cytochr 38.4 3.2E+02 0.007 28.9 10.9 57 135-193 167-229 (628)
92 PRK10263 DNA translocase FtsK; 38.0 1.6E+02 0.0034 33.9 8.8 22 171-192 20-41 (1355)
93 COG1971 Predicted membrane pro 37.4 3E+02 0.0065 24.5 9.1 48 176-228 45-92 (190)
94 CHL00070 petB cytochrome b6 36.5 1.5E+02 0.0032 26.9 7.1 24 205-228 117-140 (215)
95 PLN02631 ferric-chelate reduct 36.4 55 0.0012 35.0 5.0 72 204-277 191-267 (699)
96 MTH00131 CYTB cytochrome b; Pr 36.4 1.2E+02 0.0025 30.0 6.9 96 166-268 28-139 (380)
97 MTH00145 CYTB cytochrome b; Pr 36.1 1.4E+02 0.0031 29.4 7.6 81 181-268 45-140 (379)
98 PF12271 Chs3p: Chitin synthas 36.0 2.3E+02 0.0049 27.0 8.5 19 272-290 191-209 (293)
99 MTH00016 CYTB cytochrome b; Va 35.6 1.5E+02 0.0033 29.2 7.6 95 167-268 30-140 (378)
100 PRK10639 formate dehydrogenase 35.6 1.1E+02 0.0024 27.3 6.2 29 235-263 105-133 (211)
101 MTH00033 CYTB cytochrome b; Pr 35.3 1.4E+02 0.003 29.5 7.3 95 167-268 26-136 (383)
102 PF02628 COX15-CtaA: Cytochrom 35.1 1.1E+02 0.0025 28.7 6.5 55 204-266 70-124 (302)
103 MTH00034 CYTB cytochrome b; Va 34.8 1.5E+02 0.0032 29.2 7.4 95 167-268 29-139 (379)
104 PRK10171 hydrogenase 1 b-type 34.7 2.8E+02 0.0061 25.1 8.8 26 238-263 126-151 (235)
105 KOG2082 K+/Cl- cotransporter K 34.2 70 0.0015 34.5 5.1 27 231-257 597-623 (1075)
106 PF11158 DUF2938: Protein of u 34.0 61 0.0013 27.7 4.0 51 204-254 93-149 (150)
107 COG4858 Uncharacterized membra 33.3 3.6E+02 0.0077 24.2 9.7 86 163-260 91-184 (226)
108 MTH00046 CYTB cytochrome b; Va 33.3 1.1E+02 0.0023 30.0 6.1 82 180-268 34-130 (355)
109 MTH00100 CYTB cytochrome b; Pr 32.9 1.6E+02 0.0035 29.0 7.3 83 179-268 42-139 (379)
110 COG1294 AppB Cytochrome bd-typ 32.8 4.3E+02 0.0093 25.8 10.0 84 210-293 93-187 (346)
111 PRK10369 heme lyase subunit Nr 32.1 5.2E+02 0.011 27.0 11.1 57 135-193 169-231 (571)
112 COG4244 Predicted membrane pro 31.0 2.4E+02 0.0053 24.4 7.1 33 233-265 82-114 (160)
113 PF05767 Pox_A14: Poxvirus vir 30.9 1.5E+02 0.0032 23.2 5.2 19 243-261 16-34 (92)
114 PF14358 DUF4405: Domain of un 30.7 1.7E+02 0.0037 20.6 5.4 26 231-256 35-60 (64)
115 COG3428 Predicted membrane pro 30.1 15 0.00033 37.1 -0.3 63 226-293 3-65 (494)
116 cd01663 Cyt_c_Oxidase_I Cytoch 29.9 5.2E+02 0.011 26.4 10.6 56 133-188 45-109 (488)
117 COG4097 Predicted ferric reduc 29.8 5.7E+02 0.012 25.5 11.8 57 165-222 32-96 (438)
118 PF14007 YtpI: YtpI-like prote 29.6 1.5E+02 0.0032 23.1 5.1 40 208-260 39-78 (89)
119 MTH00191 CYTB cytochrome b; Pr 29.6 1.9E+02 0.0041 28.4 7.1 97 165-268 24-136 (365)
120 PF10953 DUF2754: Protein of u 29.2 85 0.0018 22.4 3.3 32 230-262 4-35 (70)
121 MTH00074 CYTB cytochrome b; Pr 29.1 1.7E+02 0.0038 28.8 6.8 81 181-268 45-140 (380)
122 MTH00156 CYTB cytochrome b; Pr 28.9 1.9E+02 0.0041 28.3 7.0 83 179-268 32-129 (356)
123 PLN02844 oxidoreductase/ferric 28.8 1.1E+02 0.0024 33.0 5.6 65 204-271 194-265 (722)
124 PRK09546 zntB zinc transporter 28.7 91 0.002 29.7 4.7 44 244-287 270-314 (324)
125 MTH00119 CYTB cytochrome b; Pr 28.6 2.1E+02 0.0045 28.2 7.3 97 165-268 28-140 (380)
126 COG3671 Predicted membrane pro 28.0 1.7E+02 0.0037 24.1 5.3 51 138-191 31-82 (125)
127 MTH00224 CYTB cytochrome b; Pr 27.9 1.7E+02 0.0038 28.8 6.6 95 167-268 30-140 (379)
128 PF04689 S1FA: DNA binding pro 27.8 64 0.0014 23.5 2.6 34 284-318 31-68 (69)
129 PF06423 GWT1: GWT1; InterPro 27.4 3.6E+02 0.0078 22.3 8.0 75 205-279 7-84 (136)
130 MTH00022 CYTB cytochrome b; Va 26.7 1.8E+02 0.0038 28.7 6.4 81 181-268 43-138 (379)
131 COG3247 HdeD Uncharacterized c 26.7 4.5E+02 0.0098 23.3 10.5 18 248-265 134-151 (185)
132 PRK11281 hypothetical protein; 26.0 1.6E+02 0.0034 33.5 6.4 14 204-217 648-661 (1113)
133 KOG4812 Golgi-associated prote 25.7 53 0.0011 30.3 2.3 46 177-224 196-241 (262)
134 PHA03048 IMV membrane protein; 25.7 2.1E+02 0.0045 22.3 5.2 58 243-300 16-75 (93)
135 KOG2532 Permease of the major 25.6 2.6E+02 0.0057 28.2 7.6 79 205-289 357-445 (466)
136 KOG3637 Vitronectin receptor, 25.4 46 0.00099 37.3 2.2 34 267-300 977-1010(1030)
137 TIGR02908 CoxD_Bacillus cytoch 25.4 3.7E+02 0.008 21.8 8.3 46 169-223 26-71 (110)
138 PF06027 DUF914: Eukaryotic pr 25.3 6.3E+02 0.014 24.4 9.9 44 173-216 133-176 (334)
139 PRK10209 acid-resistance membr 25.2 4.6E+02 0.01 22.9 8.5 18 173-190 49-66 (190)
140 PRK03735 cytochrome b6; Provis 25.1 2.9E+02 0.0063 25.2 7.0 24 205-228 125-148 (223)
141 KOG1608 Protein transporter of 25.0 2.3E+02 0.0049 27.2 6.3 58 207-264 217-280 (374)
142 COG3658 Cytochrome b [Energy p 24.9 4.7E+02 0.01 22.9 9.6 23 203-225 35-57 (192)
143 TIGR00245 conserved hypothetic 24.7 4.8E+02 0.01 24.1 8.5 23 267-289 117-139 (248)
144 PRK11513 cytochrome b561; Prov 24.6 1.6E+02 0.0034 25.6 5.1 29 235-263 39-67 (176)
145 PF06609 TRI12: Fungal trichot 24.5 4E+02 0.0086 28.1 8.8 28 243-270 241-269 (599)
146 MTH00213 ND6 NADH dehydrogenas 24.4 1.6E+02 0.0034 26.8 5.0 50 237-286 21-70 (239)
147 PF12811 BaxI_1: Bax inhibitor 24.3 2.2E+02 0.0049 26.8 6.3 51 239-292 209-267 (274)
148 COG0598 CorA Mg2+ and Co2+ tra 24.2 90 0.0019 29.8 3.8 45 245-289 269-314 (322)
149 KOG0569 Permease of the major 23.9 5.4E+02 0.012 26.3 9.4 70 204-278 122-192 (485)
150 PF07331 TctB: Tripartite tric 23.7 3.9E+02 0.0085 21.5 11.0 52 177-228 6-61 (141)
151 PF01102 Glycophorin_A: Glycop 23.5 51 0.0011 27.2 1.7 9 272-280 70-78 (122)
152 PF06772 LtrA: Bacterial low t 23.4 6.6E+02 0.014 24.0 11.8 21 236-261 251-271 (354)
153 MTH00053 CYTB cytochrome b; Pr 23.1 2.6E+02 0.0056 27.6 6.8 82 180-268 44-140 (381)
154 TIGR00383 corA magnesium Mg(2+ 22.9 1.5E+02 0.0032 27.9 4.9 42 246-287 266-308 (318)
155 PF12650 DUF3784: Domain of un 22.6 3E+02 0.0065 21.1 5.9 27 237-263 39-65 (97)
156 PLN02292 ferric-chelate reduct 22.2 71 0.0015 34.2 2.9 18 237-254 205-222 (702)
157 PF14387 DUF4418: Domain of un 21.7 3.7E+02 0.0081 22.1 6.4 28 164-191 28-58 (124)
158 TIGR02908 CoxD_Bacillus cytoch 21.6 4.4E+02 0.0096 21.3 7.1 48 204-261 26-73 (110)
159 PRK10929 putative mechanosensi 21.6 1.9E+02 0.0042 32.7 6.1 46 204-249 627-678 (1109)
160 PF10002 DUF2243: Predicted me 21.4 5.1E+02 0.011 22.0 8.8 81 173-255 50-138 (143)
161 PF02628 COX15-CtaA: Cytochrom 21.1 6.8E+02 0.015 23.3 11.2 90 166-262 66-155 (302)
162 PF06653 Claudin_3: Tight junc 20.9 2.3E+02 0.0051 24.1 5.4 82 208-289 62-151 (163)
163 PF07332 DUF1469: Protein of u 20.7 1.3E+02 0.0027 24.1 3.5 32 275-306 77-108 (121)
164 PF05545 FixQ: Cbb3-type cytoc 20.4 73 0.0016 21.5 1.7 25 274-300 12-36 (49)
165 COG4787 FlgF Flagellar basal b 20.4 3.1E+02 0.0067 25.1 6.0 49 10-68 74-126 (251)
166 PRK15006 thiosulfate reductase 20.3 4.6E+02 0.01 24.3 7.6 28 236-263 175-203 (261)
167 COG4097 Predicted ferric reduc 20.3 1.2E+02 0.0027 29.9 3.8 55 204-258 40-96 (438)
168 PF15069 FAM163: FAM163 family 20.2 45 0.00098 28.2 0.7 25 279-303 18-42 (143)
169 COG3247 HdeD Uncharacterized c 20.2 4.8E+02 0.01 23.1 7.2 10 135-144 20-29 (185)
170 PF06697 DUF1191: Protein of u 20.2 20 0.00043 33.8 -1.6 13 295-307 239-251 (278)
No 1
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-35 Score=284.95 Aligned_cols=309 Identities=38% Similarity=0.669 Sum_probs=250.4
Q ss_pred CeeeEEEeCCCCEEEEEEEEcCCCCcEEEEEEcCCCCCCCCCCeEEEEEcC-CCcEEEEEeecCCCCCCCCCCCcceeee
Q 036242 1 SFLHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNS-TGAIRAYTSPIGSGTPTLQEGSLSFRVT 79 (330)
Q Consensus 1 ~~l~W~~~~~~~~i~~~~~~~~~~~gWVavGfs~~g~~M~gsd~vI~~~~~-~G~v~v~~~~~~g~~~p~~~~~~~~~l~ 79 (330)
+.++++|+.+++.+++.|.+. +...|++++++|++.+|.++.+++++.++ +|...+.++...++.+...+..+.+++.
T Consensus 47 ~~i~~~~~~~~~~~~i~~~~~-~~~~w~~~~~~p~~t~m~~~~~~va~~~~~~g~~~~~t~~~~~~~~s~~~~~~~~~~~ 125 (403)
T KOG4293|consen 47 SFIHYTYNSANGVLSIAFSAP-LSSAWVAWAINPTGTGMVGSRALVAYAGSSSGATTVKTYVILGYSPSLVPALLSFTLG 125 (403)
T ss_pred ceEEEEEecCCCeEEEEEecC-CcccccccccCCccccccccceeeeeeccccchhhceeeeecccchhhcccccceeee
Confidence 578999999999999999985 34559999999999669999999999976 7789999999999875434444566777
Q ss_pred eeeEEEECCE---EEEEEEEecC---C-------------------CCCCCCCCCCcceeEEEeec--CccccCC--CCC
Q 036242 80 NITATLVGNE---WTIFARLHLY---S-------------------DLHPITGDNARSVGTIDFRT--GQIASNA--GDF 130 (330)
Q Consensus 80 ~~s~~~~~g~---~~~~~~~~l~---~-------------------~~h~~~~~~~~s~~~~dl~s--G~~~~~~--~~~ 130 (330)
+...+.+... ..+|+++++. . ..|+.++.+..+...+|++. |...... ...
T Consensus 126 ~~~~~~~~~~~~~~~if~~~~l~~~~~~~~~~~w~~~~~~~~g~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 205 (403)
T KOG4293|consen 126 NVRAECNLRSSSPIGIFASFKLAGANGGKYSAVWQVGPTGSGGGRPKRHKLSGSNLASVTSLDLTSDIGELSITSEGNFN 205 (403)
T ss_pred cCcchhhccCCCCceEEEEEEeecCCCceeEEEEEccCCccCCCCCccCccccCCccceeecccccccccccccccCccc
Confidence 7666664444 6788887666 1 23555555555555666654 3332111 101
Q ss_pred CccchhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCccc-c
Q 036242 131 DSRQRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-I 204 (330)
Q Consensus 131 ~~~~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~-~ 204 (330)
.+...+...||++| +++|.|++.+||+|..+.+.+.||++|+.+|..++++.+.|+..+....+ ++.+..+ .
T Consensus 206 ~~~~~~~~~hgil~~~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~--~s~~~~~~~ 283 (403)
T KOG4293|consen 206 SSGLKLRMTHGILNALSWGILFPAGAIIARYLRQKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSN--ESDGTVYSA 283 (403)
T ss_pred CcchhccccHHHHhhhhhheeccccceeEEEecccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEcc--CCCceeeee
Confidence 33445667799999 99999999999999987679999999999999999999999999888776 4545555 9
Q ss_pred cchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcchh-hHHHHHHHHHHHH
Q 036242 205 HRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWW-HAYIVTAISSGII 283 (330)
Q Consensus 205 H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~~~-~~~~~~v~~~~~~ 283 (330)
|..+|+.++++.++|++..++||.+++|.|++|||+|+..||..+++|++|++.|+.+.++...|. +.|+...+...++
T Consensus 284 h~~~G~~~~~l~~lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~~~~~~~~~ 363 (403)
T KOG4293|consen 284 HTDLGIILLVLAFLQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIKLGYGSILAVLGLI 363 (403)
T ss_pred cccchhHHHHHHHHHHHHHHhcCCcccCceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEEeeeeeEEEEechh
Confidence 999999999999999999999999999999999999999999999999999999999999999998 6999999999999
Q ss_pred HHHHhheeeeeeeeechhhhhhhcccccC
Q 036242 284 SAALEAITWTIVVKRKKASEEKQNQRTNG 312 (330)
Q Consensus 284 ~i~lev~~~~~~~~~~~~~~~~~~~~~~~ 312 (330)
.+.+|+.+|+..++|.+.++..+.....+
T Consensus 364 ~~~le~~~~~~~~~~~~~~~~~~~~~~~~ 392 (403)
T KOG4293|consen 364 AVILEILSWRITIERPSPSSMSRTSTNAP 392 (403)
T ss_pred hhhhhhheeeeeecccCcccccccccCcc
Confidence 99999999988888877776655555444
No 2
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.97 E-value=2e-30 Score=230.30 Aligned_cols=174 Identities=33% Similarity=0.542 Sum_probs=150.0
Q ss_pred ceeEEEeecCccccCCCC--------CCccchhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHH
Q 036242 112 SVGTIDFRTGQIASNAGD--------FDSRQRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSA 178 (330)
Q Consensus 112 s~~~~dl~sG~~~~~~~~--------~~~~~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~ 178 (330)
++.++|+++|+++..... ..+.+..+++||+|| +++|.|++++||++. +++.||++|+.+|+++
T Consensus 3 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~---~~~~~~~~H~~~q~~~ 79 (191)
T cd08760 3 SSYSLDLASGTSSSGGSPFLLPNGSSVGSSDTLIKAHGVLMAIAWGILMPIGALLARYFLL---GDPVWFYLHAGLQLLA 79 (191)
T ss_pred cceEEEeccceeccCCCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCchhHHHHHHHHHHH
Confidence 556888888776433210 023467899999999 999999999999743 5688999999999999
Q ss_pred HHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 036242 179 YIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLK 258 (330)
Q Consensus 179 ~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~ 258 (330)
++++++|+++++.... .+.+++.+.|+++|+++++++++|+++|++||.+..+.|+.|+++|+++|+++++||++|+++
T Consensus 80 ~~~~i~g~~~~~~~~~-~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~ 158 (191)
T cd08760 80 VLLAIAGFVLGIVLVQ-GGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFL 158 (191)
T ss_pred HHHHHHHHHHHHHhhc-cCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999751 134567779999999999999999999999999988899999999999999999999999999
Q ss_pred hccccCCC--cchhhHHHHHHHHHHHHHHHHhh
Q 036242 259 GLSLLDPE--IQWWHAYIVTAISSGIISAALEA 289 (330)
Q Consensus 259 Gl~l~~~~--~~~~~~~~~~v~~~~~~~i~lev 289 (330)
|+.+...+ +.+.++|.+++++.+++++++|+
T Consensus 159 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (191)
T cd08760 159 GLDLAGAGTPKAWKIAYGVVVAVLALVYLILEI 191 (191)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHHHHHHHHcC
Confidence 99999876 77888999999999999988874
No 3
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.92 E-value=6.4e-25 Score=183.17 Aligned_cols=120 Identities=34% Similarity=0.550 Sum_probs=107.9
Q ss_pred hhhhhH-----hhhhhhHHHHhh-hcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHH
Q 036242 139 FHQFLS-----ILMPMGAMMARY-LKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIAL 212 (330)
Q Consensus 139 ~Hg~lM-----il~p~gi~~aR~-~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~ 212 (330)
+||++| +++|.|++++|| .+.. +++.||++|+.+|+++++++++|+++++...+..+.+++.++|+++|+++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~--~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~ 78 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFL--SKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAA 78 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHH
Confidence 699999 899999999998 3332 57889999999999999999999999999887433457888999999999
Q ss_pred HHHHHHHHhheeeccCCC---CCCcchhhHHHHHHHHHHHHHHHHHHHHhc
Q 036242 213 FFLATVQVFALLLRPKPD---HKYRLYWNIYHWAVGYAIIVTSVFNVLKGL 260 (330)
Q Consensus 213 ~~l~~~Q~l~g~~rp~~~---~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl 260 (330)
+++.++|++.|++||.++ .+.|+.++++|+++|+++++||++|+++|+
T Consensus 79 ~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 79 FVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999999998776 678899999999999999999999999995
No 4
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.88 E-value=3.6e-22 Score=167.80 Aligned_cols=123 Identities=29% Similarity=0.435 Sum_probs=107.2
Q ss_pred hhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHH
Q 036242 139 FHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALF 213 (330)
Q Consensus 139 ~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~ 213 (330)
+||+|| +++|.|++++|+.+..+.+++.|+++|+.+|.+++++.++|+++++...+..+.+++.+.|+++|++++
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~ 80 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATF 80 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHH
Confidence 699999 889999999997441123678899999999999999999999999998875455778889999999999
Q ss_pred HHHHHHHhheeecc---CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcc
Q 036242 214 FLATVQVFALLLRP---KPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLS 261 (330)
Q Consensus 214 ~l~~~Q~l~g~~rp---~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~ 261 (330)
++.++|++.|++++ ..+.+.|+.++++|+++|++++++|++|+.+|+.
T Consensus 81 ~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~ 131 (137)
T PF03188_consen 81 VLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLT 131 (137)
T ss_pred HHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998764 4555678889999999999999999999999984
No 5
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.86 E-value=7.3e-22 Score=165.05 Aligned_cols=122 Identities=23% Similarity=0.337 Sum_probs=107.3
Q ss_pred hhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHH
Q 036242 137 RNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIA 211 (330)
Q Consensus 137 ~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~ 211 (330)
+++||+|| +++|.|++++|++|.. +++.|+++|+.+|++++++.++|+++++...+..+.+++.+.|+++|++
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~--~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~ 79 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLL--TKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLA 79 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhcccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHH
Confidence 57999999 7999999999998765 5678999999999999999999999999987532455777899999999
Q ss_pred HHHHHHHHHhheeec---cCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhc
Q 036242 212 LFFLATVQVFALLLR---PKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGL 260 (330)
Q Consensus 212 ~~~l~~~Q~l~g~~r---p~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl 260 (330)
++++.++|++.|+.+ |.+..+.|+.++++|+++|+++++++++|+++|+
T Consensus 80 ~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 80 TVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998765 4443446889999999999999999999999984
No 6
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.83 E-value=1.3e-20 Score=159.25 Aligned_cols=128 Identities=17% Similarity=0.176 Sum_probs=112.2
Q ss_pred ccchhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccc
Q 036242 132 SRQRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHR 206 (330)
Q Consensus 132 ~~~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~ 206 (330)
++.+++++|+.|| ++++-|+++.|..|. .++.|..+|+.+|.+++++.++|++.++..++..+.+++.++|+
T Consensus 3 ~~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~---~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHS 79 (144)
T cd08766 3 NKGLIFNVHPVLMVIGFIFLAGEAILAYKTVPG---SREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHS 79 (144)
T ss_pred CCcceeeccHHHHHHHHHHHHHHHHHHhhcccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHH
Confidence 4568999999999 788999999997664 46678999999999999999999999999887545567788999
Q ss_pred hhhHHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242 207 NIGIALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL 262 (330)
Q Consensus 207 ~iGi~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l 262 (330)
|+|++++++..+|++.|+ +.|....+.|+...++|+++|++++++|++++.+|+..
T Consensus 80 wlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~e 138 (144)
T cd08766 80 WLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLE 138 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999884 57886666788888899999999999999999999864
No 7
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.82 E-value=8e-20 Score=163.61 Aligned_cols=167 Identities=18% Similarity=0.135 Sum_probs=129.3
Q ss_pred chhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCc--cCCCcccccc
Q 036242 134 QRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGI--SSLNRDYIHR 206 (330)
Q Consensus 134 ~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~--~~~~~~~~H~ 206 (330)
...+++|++|| +++..|+++.|.+|.. .+..+..+|..+|.++++++++|+.++|..++.. +.+++.++|+
T Consensus 21 ~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~--~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHS 98 (214)
T cd08764 21 GLQFNWHPLLMVLGLIFLYGNSILVYRVFRNT--RKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHS 98 (214)
T ss_pred CceEeecHHHHHHHHHHHHHHHHHHhccCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHH
Confidence 46799999999 8889999999987753 4566888999999999999999999999887643 4457777999
Q ss_pred hhhHHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcccc--------C--CCcchhhHH
Q 036242 207 NIGIALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLL--------D--PEIQWWHAY 273 (330)
Q Consensus 207 ~iGi~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~--------~--~~~~~~~~~ 273 (330)
|+|++++++..+|++.|+ +.|......|+...++|+++|+++++++++++.+|+... . ++.......
T Consensus 99 wlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~~~~~~~~e~~l~N~ 178 (214)
T cd08764 99 WLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKAFFSLNKYSNLPAEGVLGNF 178 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChhHHHHHH
Confidence 999999999999999885 578765567777777899999999999999999999641 1 123344466
Q ss_pred HHHHHHHHHHHHHHhheeeeeeeeechhhh
Q 036242 274 IVTAISSGIISAALEAITWTIVVKRKKASE 303 (330)
Q Consensus 274 ~~~v~~~~~~~i~lev~~~~~~~~~~~~~~ 303 (330)
.++++++.++.|++-+..-. ++|+...|+
T Consensus 179 ~gl~~~~fg~~V~~~~~~~~-~kr~~~~~~ 207 (214)
T cd08764 179 IGIVLVIFGGLVVYLVTEPD-YKRIELPEE 207 (214)
T ss_pred HHHHHHHHHHHHHHhccCcc-cCCCCCchh
Confidence 66666666666666555332 344444444
No 8
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.82 E-value=1e-19 Score=160.59 Aligned_cols=129 Identities=17% Similarity=0.181 Sum_probs=108.7
Q ss_pred chhhhhhhhhH-----hhhhhhHHHHhhhccc-ccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccch
Q 036242 134 QRKRNFHQFLS-----ILMPMGAMMARYLKVF-RFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRN 207 (330)
Q Consensus 134 ~~~~~~Hg~lM-----il~p~gi~~aR~~k~~-~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~ 207 (330)
..++++||++| +++|.|++..|-.... +.+++.|+++|+.+|.++++++++|+++++..++..+.+++.+.|++
T Consensus 18 ~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~~ 97 (183)
T cd08761 18 TSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHGI 97 (183)
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHH
Confidence 46899999999 8999999975532211 12567899999999999999999999999988764345678889999
Q ss_pred hhHHHHHHHHHHHhheee---ccCCC--CCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242 208 IGIALFFLATVQVFALLL---RPKPD--HKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL 262 (330)
Q Consensus 208 iGi~~~~l~~~Q~l~g~~---rp~~~--~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l 262 (330)
+|++++++.++|++.|++ +|... .++|+.++++|+++|++++++|++|+.+|++.
T Consensus 98 lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 98 LGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999874 44333 26788999999999999999999999999987
No 9
>PLN02351 cytochromes b561 family protein
Probab=99.81 E-value=2e-19 Score=162.28 Aligned_cols=153 Identities=16% Similarity=0.020 Sum_probs=119.4
Q ss_pred hhh-hhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchh
Q 036242 135 RKR-NFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNI 208 (330)
Q Consensus 135 ~~~-~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~i 208 (330)
..+ ++|++|| +|.+.||++.|.+|. .++.|+.+|..+|.++++++++|+...+-..++ ..+++.++|+|+
T Consensus 48 ~iffn~HP~lMviGfi~L~geAILvYR~~~~---~~k~~K~lH~~Lh~~Ali~~vvGl~a~fh~~~~-~i~nlySLHSWl 123 (242)
T PLN02351 48 LVYAVLHPLLMVIGFILISGEAILVHRWLPG---SRKTKKSVHLWLQGLALASGVFGIWTKFHGQDG-IVANFYSLHSWM 123 (242)
T ss_pred ceeecccHHHHHHHHHHHHHHHHHHhhcccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CccchhHHHHHH
Confidence 355 7999999 899999999999874 345699999999999999999999984433221 135677799999
Q ss_pred hHHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcccc------C------CCcchhhHH
Q 036242 209 GIALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLL------D------PEIQWWHAY 273 (330)
Q Consensus 209 Gi~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~------~------~~~~~~~~~ 273 (330)
|++++++..+|++.|+ +.|......|....++|.++|+++++||++++.+|+... . ++.......
T Consensus 124 Gl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN~ 203 (242)
T PLN02351 124 GLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKHGSESMVVNG 203 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCchhhhHHH
Confidence 9999999999999875 567766667888889999999999999999999999642 1 123344566
Q ss_pred HHHHHHHHHHHHHHhhee
Q 036242 274 IVTAISSGIISAALEAIT 291 (330)
Q Consensus 274 ~~~v~~~~~~~i~lev~~ 291 (330)
.++++++.++.|++-+..
T Consensus 204 ~Glliv~fG~~Vv~~~~~ 221 (242)
T PLN02351 204 LGLGLALLSGIVILAAVL 221 (242)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 666666666555655543
No 10
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.80 E-value=2.1e-19 Score=155.83 Aligned_cols=128 Identities=23% Similarity=0.256 Sum_probs=107.4
Q ss_pred hhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhh
Q 036242 135 RKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIG 209 (330)
Q Consensus 135 ~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iG 209 (330)
+.+++|++|| +|...++++.|..+..+..+..|+.+|..+|.++++++++|+..+|.+++..+.+++.++|+|+|
T Consensus 33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlG 112 (179)
T cd08762 33 KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVG 112 (179)
T ss_pred CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHH
Confidence 4899999999 56666677666544332245668999999999999999999999999988545566777999999
Q ss_pred HHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242 210 IALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL 262 (330)
Q Consensus 210 i~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l 262 (330)
++++++..+|.+.|+ +.|......|....++|+++|++++++|++++.+|+..
T Consensus 113 l~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~e 168 (179)
T cd08762 113 ICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINE 168 (179)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999875 46766666788889999999999999999999999864
No 11
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=99.79 E-value=3e-19 Score=151.90 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=110.6
Q ss_pred chhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchh
Q 036242 134 QRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNI 208 (330)
Q Consensus 134 ~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~i 208 (330)
...+++|++|| +++..++++.|-.+..+..++.+..+|+.+|.+++++.++|+..+|..++..+.+++.++|+|+
T Consensus 9 ~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwl 88 (153)
T cd08765 9 AAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWV 88 (153)
T ss_pred CCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHH
Confidence 46899999999 7777888888854433224677899999999999999999999999987754566888899999
Q ss_pred hHHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242 209 GIALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL 262 (330)
Q Consensus 209 Gi~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l 262 (330)
|++++++..+|.+.|+ +.|....+.|+...++|+++|+++++|+++++.+|+..
T Consensus 89 Gl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~e 145 (153)
T cd08765 89 GLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITE 145 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999884 57876667788889999999999999999999999864
No 12
>PLN02810 carbon-monoxide oxygenase
Probab=99.79 E-value=8.9e-19 Score=156.88 Aligned_cols=154 Identities=17% Similarity=0.106 Sum_probs=126.8
Q ss_pred cchhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccch
Q 036242 133 RQRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRN 207 (330)
Q Consensus 133 ~~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~ 207 (330)
++..+++|++|| ++...++++.|.++. .++.+..+|..+|.++++++++|+..+|..++..+.+++.++|+|
T Consensus 43 ~~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~---~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSW 119 (231)
T PLN02810 43 KNLIFNLHPVLMLIGLIIIGGEAIMSYKSLPL---KKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSW 119 (231)
T ss_pred CCceeeehHHHHHHHHHHHhhHHHHHhhcccc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHH
Confidence 346899999999 777889999887654 356789999999999999999999999999875556777889999
Q ss_pred hhHHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcccc-----C------CCcchhhHH
Q 036242 208 IGIALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLL-----D------PEIQWWHAY 273 (330)
Q Consensus 208 iGi~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~-----~------~~~~~~~~~ 273 (330)
+|++++++..+|++.|+ +.|......|....++|.++|.+++++|++++.+|+... . ++.......
T Consensus 120 lGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~~~~~~~~Ea~lvN~ 199 (231)
T PLN02810 120 LGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEKLTFLESGGLDKYGSEALLVNF 199 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCchhhhHHH
Confidence 99999999999999886 688877778888889999999999999999999999642 1 123344566
Q ss_pred HHHHHHHHHHHHHHhh
Q 036242 274 IVTAISSGIISAALEA 289 (330)
Q Consensus 274 ~~~v~~~~~~~i~lev 289 (330)
.++++++.++.+++.+
T Consensus 200 ~Glliv~fg~~V~~~~ 215 (231)
T PLN02810 200 TAIITILYGAFVVLTA 215 (231)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6776666666666655
No 13
>PLN02680 carbon-monoxide oxygenase
Probab=99.78 E-value=1.2e-18 Score=157.17 Aligned_cols=157 Identities=17% Similarity=0.093 Sum_probs=123.5
Q ss_pred ccchhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccc
Q 036242 132 SRQRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHR 206 (330)
Q Consensus 132 ~~~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~ 206 (330)
++..++++|++|| ++...++++.|..|. .++.+..+|..+|.++++++++|++.+|..++..+.+++.++|+
T Consensus 42 ~~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~---~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHS 118 (232)
T PLN02680 42 NKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVPG---TKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHS 118 (232)
T ss_pred CCcceEechHHHHHHHHHHHHHHHHhccccccc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHH
Confidence 3456899999999 666678888765443 46678899999999999999999999999887545567888999
Q ss_pred hhhHHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcccc------C------CCcchhh
Q 036242 207 NIGIALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLL------D------PEIQWWH 271 (330)
Q Consensus 207 ~iGi~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~------~------~~~~~~~ 271 (330)
|+|++++++..+|++.|+ +.|....+.|+...++|+++|+++++|+++++.+|+... . ++.....
T Consensus 119 WlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek~~f~~~~~~~~~~~~e~~lv 198 (232)
T PLN02680 119 WLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILEKATFLQSNKVISRYSTEAMLV 198 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCchhhhH
Confidence 999999999999999874 678766566776778999999999999999999999642 1 1223344
Q ss_pred HHHHHHHHHHHHHHHHhhee
Q 036242 272 AYIVTAISSGIISAALEAIT 291 (330)
Q Consensus 272 ~~~~~v~~~~~~~i~lev~~ 291 (330)
...++++++.++.+++.+..
T Consensus 199 N~~gl~~~~fg~~V~~~v~~ 218 (232)
T PLN02680 199 NSLGILIVVLGGFVILAIVT 218 (232)
T ss_pred hHHHHHHHHHHHHHHHhhcc
Confidence 56666666666666665543
No 14
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.77 E-value=1.7e-18 Score=146.28 Aligned_cols=126 Identities=21% Similarity=0.199 Sum_probs=110.2
Q ss_pred hhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhh
Q 036242 135 RKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIG 209 (330)
Q Consensus 135 ~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iG 209 (330)
.++++|+++| +++..++++.|..+.. .++.+..+|+.+|.+++++.++|+.+++..++..+.+++.+.|+|+|
T Consensus 5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~--~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlG 82 (143)
T cd08763 5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNE--TKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCG 82 (143)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHH
Confidence 4899999999 6778888988876543 45668889999999999999999999999877545568888999999
Q ss_pred HHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242 210 IALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL 262 (330)
Q Consensus 210 i~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l 262 (330)
++++++..+|.+.|+ +.|....+.|..+.++|+++|+++++++++++.+|+..
T Consensus 83 l~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~e 138 (143)
T cd08763 83 ILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTE 138 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999884 57877677889999999999999999999999999864
No 15
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=99.75 E-value=3.6e-18 Score=152.66 Aligned_cols=127 Identities=20% Similarity=0.287 Sum_probs=111.8
Q ss_pred chhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchh
Q 036242 134 QRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNI 208 (330)
Q Consensus 134 ~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~i 208 (330)
++.+++|++|| .+.-.++++.|.+|.. .++.-.-+|..+|+.+++++++|+..+|..++...-.++.+.|+|+
T Consensus 52 ~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~--~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWl 129 (245)
T KOG1619|consen 52 NKEFNLHPVLMVIGFIYLQGEAILIYRVFRYT--SKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWL 129 (245)
T ss_pred chhcCcchHHHHHHHHHhccceeeeeehhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHH
Confidence 67899999999 5556688999987775 3566778999999999999999999999998754456777899999
Q ss_pred hHHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242 209 GIALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL 262 (330)
Q Consensus 209 Gi~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l 262 (330)
|+.++.+..+|++.|| +.|.-..+.|...-++|+.+|..++++|++|+.+|+..
T Consensus 130 Gl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~e 186 (245)
T KOG1619|consen 130 GLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLE 186 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999885 67887889999999999999999999999999999953
No 16
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=99.68 E-value=7.3e-16 Score=131.01 Aligned_cols=95 Identities=27% Similarity=0.436 Sum_probs=80.7
Q ss_pred eeeEEEeCCCCEEEEEEEEcCCCCcEEEEEEcCCCCCCCCCCeEEEEEcCCCcEEEEEeecCCCCCCCCCCCcceeeeee
Q 036242 2 FLHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSPIGSGTPTLQEGSLSFRVTNI 81 (330)
Q Consensus 2 ~l~W~~~~~~~~i~~~~~~~~~~~gWVavGfs~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~~~p~~~~~~~~~l~~~ 81 (330)
.|+|+++.+ +++.|.++++..+.||+|||||++++ |.++|++||+.+++|.+.+++||++|++.|.++. ..++...
T Consensus 5 ~l~W~~~~~-~~v~~~l~~~~~~~gwvaiGfs~~~~-M~~~d~vv~~~~~~g~~~v~d~~~~~~~~~~~d~--~~~~~~~ 80 (148)
T smart00664 5 FLSWSVDGE-NSIAFELSGPTSTNGWVAIGFSPDGQ-MAGADVVVAWVDNNGRVTVKDYYTPGYGPPVEDD--QQDVTDL 80 (148)
T ss_pred EEEEEECCC-CeEEEEEEEecCCCCEEEEEECCCCC-cCCCCEEEEEEcCCCCEEEEEEEcCCCCCCCcCc--ccccccc
Confidence 689999976 88888888764338999999999977 9999999999987799999999999998776543 3456655
Q ss_pred -eEEEECCEEEEEEEEecCC
Q 036242 82 -TATLVGNEWTIFARLHLYS 100 (330)
Q Consensus 82 -s~~~~~g~~~~~~~~~l~~ 100 (330)
++.++||.++|.++|++++
T Consensus 81 ~~~~~~~g~~~~~f~R~l~t 100 (148)
T smart00664 81 LSATYENGVLTCRFRRKLGS 100 (148)
T ss_pred eeEEEECCEEEEEEEEEccC
Confidence 8889999999999988876
No 17
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=99.63 E-value=7.4e-15 Score=120.81 Aligned_cols=97 Identities=19% Similarity=0.291 Sum_probs=80.8
Q ss_pred eeeEEEeCCCCEEEEEEEEcCCCCcEEEEEEcCCCCCCCCCCeEEEEEcCCCcEEEEEee-cCCCCCCCCCCCcceeeee
Q 036242 2 FLHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSP-IGSGTPTLQEGSLSFRVTN 80 (330)
Q Consensus 2 ~l~W~~~~~~~~i~~~~~~~~~~~gWVavGfs~~g~~M~gsd~vI~~~~~~G~v~v~~~~-~~g~~~p~~~~~~~~~l~~ 80 (330)
.|+|+++.++++++|.+++...+.+|+|+|||++++ |.++|+++|+.+ +|.+.++++| .++++.|..+..-+.++..
T Consensus 6 ~l~w~~~~~~~~i~~~l~~~~~~~~w~aiGfs~~~~-M~~~Dvv~~~~~-~~~~~v~d~~~~~~~~~p~~d~~~~~~~~~ 83 (124)
T PF03351_consen 6 SLSWTVDGDNNTIEFELTGPANTNGWVAIGFSDDGG-MGGSDVVVCWVD-DGKVYVQDYYSTGGYGPPTVDDQGSQDIQL 83 (124)
T ss_pred EEEEEEECCCCEEEEEEEeccCCCCEEEEEEccccC-CCCCcEEEEEEc-CCceeEEEeeccCcccceeeccccCCcEEE
Confidence 589999987888888888654338999999999999 999999999998 6999999999 8888877665321245777
Q ss_pred eeEEEECCEEEEEEEEecCC
Q 036242 81 ITATLVGNEWTIFARLHLYS 100 (330)
Q Consensus 81 ~s~~~~~g~~~~~~~~~l~~ 100 (330)
.++.+++|.++|.++|++.+
T Consensus 84 ~~~~~~~g~~~~~F~R~l~t 103 (124)
T PF03351_consen 84 LSGSYSNGTTTCSFTRPLNT 103 (124)
T ss_pred EEEEEECCEEEEEEEEEccC
Confidence 78889999999988888876
No 18
>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein.
Probab=99.31 E-value=1.3e-11 Score=98.11 Aligned_cols=80 Identities=46% Similarity=0.738 Sum_probs=73.9
Q ss_pred CCCCCeEEEEEcCC-CcEEEEEeecCCCCCCCCCCCcceeeeeeeEEEECCEEEEEEEEecCC-----------------
Q 036242 39 MAGSKCHVAFRNST-GAIRAYTSPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYS----------------- 100 (330)
Q Consensus 39 M~gsd~vI~~~~~~-G~v~v~~~~~~g~~~p~~~~~~~~~l~~~s~~~~~g~~~~~~~~~l~~----------------- 100 (330)
|.|++++|++++++ |.+.+++|.+++|.+.+.++++++++.+.++++++|+++||++++|+.
T Consensus 1 M~GtqALvAf~~~~~G~~~v~T~~i~sy~~~l~~~~lsf~v~~lsae~~~~~~~IfAtl~Lp~n~t~vnhVWQ~G~~v~g 80 (101)
T PF04526_consen 1 MVGTQALVAFKNSNGGSVTVYTYNITSYSPSLQPGPLSFDVSDLSAEYSGGEMTIFATLKLPGNSTSVNHVWQVGPSVQG 80 (101)
T ss_pred CCCceEEEEEeCCCCceEEEEEEeecccccccccccccccccceEeEEeCCEEEEEEEEEcCCCCcEEEEEeCcCCccCC
Confidence 99999999999988 899999999999987788888999999999999999999999999986
Q ss_pred ---CCCCCCCCCCcceeEEEe
Q 036242 101 ---DLHPITGDNARSVGTIDF 118 (330)
Q Consensus 101 ---~~h~~~~~~~~s~~~~dl 118 (330)
.+|+++++|+.|.+++||
T Consensus 81 g~p~~H~~~~~Nl~S~gtldl 101 (101)
T PF04526_consen 81 GSPQPHPTSGANLQSKGTLDL 101 (101)
T ss_pred CccccCCCCCccccceEEecC
Confidence 458888899999999996
No 19
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=98.84 E-value=9.3e-09 Score=82.66 Aligned_cols=83 Identities=24% Similarity=0.394 Sum_probs=70.0
Q ss_pred ccchhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCc--ccc
Q 036242 132 SRQRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNR--DYI 204 (330)
Q Consensus 132 ~~~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~--~~~ 204 (330)
..+....+|+++| +++|+|++..+. | ..| |..+|++.+++.++|+.++....+ ..+++ .+.
T Consensus 13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~-~------sr~---~~~~q~~~~~l~~~g~~~g~~~~~--~~p~lyp~n~ 80 (105)
T PF10348_consen 13 PHRSALYAHIVLMTLAWVILYPIGLVLGNA-R------SRW---HLPVQTVFLVLMILGLFLGSVYNG--STPDLYPNNA 80 (105)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHc-c------chH---HHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCH
Confidence 3467899999999 999999997664 2 235 999999999999999999998776 44445 449
Q ss_pred cchhhHHHHHHHHHHHhheeec
Q 036242 205 HRNIGIALFFLATVQVFALLLR 226 (330)
Q Consensus 205 H~~iGi~~~~l~~~Q~l~g~~r 226 (330)
|.++|.++++++++|++.|+++
T Consensus 81 H~k~g~il~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 81 HGKMGWILFVLMIVQVILGVIL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 20
>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose. It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.
Probab=98.31 E-value=3.7e-06 Score=74.11 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=58.6
Q ss_pred EEEEEEEEcCCC-CcEEEEEEcCCCCCCCCCCeEEEEEcCCCcEEEEEeecCCCCCC-CCCCCcceeeeeeeEEEECCEE
Q 036242 13 VVDLAFRRSTPS-SQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSPIGSGTPT-LQEGSLSFRVTNITATLVGNEW 90 (330)
Q Consensus 13 ~i~~~~~~~~~~-~gWVavGfs~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~~~p-~~~~~~~~~l~~~s~~~~~g~~ 90 (330)
.-+|.+++..|. .||+|+|+ |.+|.++.++|+|.|++ +++++.|+.+||.+| ..+++..+.++.. ..++++.+
T Consensus 39 ~~d~i~qi~aP~~~gW~gls~---Gg~M~~~~L~vaw~~g~-~Vt~S~R~atg~~~P~~y~g~a~~t~L~g-s~vn~t~~ 113 (184)
T cd00241 39 STEFIGELVAPRASGWIGLAL---GGAMTNSLLLVAWPNGN-QIVSSTRYATGYTLPDAYTGPATITQLPS-SSVNSTHW 113 (184)
T ss_pred CCCEEEEEeCcCCCCeEEEee---cccCCCCeEEEEEcCCC-eEEEeEEEecCccCCCccCCCceEEECCC-CcEeCCEE
Confidence 347778888887 99999999 56699999999999764 599999999999887 4444445556644 34678888
Q ss_pred EE
Q 036242 91 TI 92 (330)
Q Consensus 91 ~~ 92 (330)
+.
T Consensus 114 t~ 115 (184)
T cd00241 114 KL 115 (184)
T ss_pred EE
Confidence 75
No 21
>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism]
Probab=98.14 E-value=3.4e-06 Score=82.46 Aligned_cols=93 Identities=13% Similarity=0.181 Sum_probs=65.4
Q ss_pred eeeEEEeCCCCEEEEEEEEcCCCCcEEEEEEcCCCCCCCCCCeEEEEEcCCCcEEEEEeecCCCCCCCCCCCcceeeeee
Q 036242 2 FLHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSPIGSGTPTLQEGSLSFRVTNI 81 (330)
Q Consensus 2 ~l~W~~~~~~~~i~~~~~~~~~~~gWVavGfs~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~~~p~~~~~~~~~l~~~ 81 (330)
.|.|.++.+.+.+.|.++.. +.+||++|||+.|. |.+||+++++.+ .+...+.|+|.+....--.|.++++.++
T Consensus 46 ~lsW~vdy~~q~i~F~l~~~--t~~~v~fGfSdrG~-lanaDivv~~n~-g~~~~~~DayTn~d~qi~~D~QQDyqll-- 119 (603)
T KOG3568|consen 46 WLSWSVDYRGQQIAFRLQVR--TAGYVGFGFSDRGA-LANADIVVGGNA-GGRPYLQDAYTNADGQIKKDAQQDYQLL-- 119 (603)
T ss_pred EEEEeeccccceeEEEEEec--cCCEEEEecCCcCC-cccCcEEEEecc-CCchhhhhhhcCCCCceecchhhhhHHH--
Confidence 58999988888777776664 69999999999999 999999999975 4668899999765543222223333333
Q ss_pred eEEEECCEEEEEEEEecCC
Q 036242 82 TATLVGNEWTIFARLHLYS 100 (330)
Q Consensus 82 s~~~~~g~~~~~~~~~l~~ 100 (330)
....+...+++-+||++.+
T Consensus 120 ~~~e~~~~~~i~frRkl~T 138 (603)
T KOG3568|consen 120 YAMENSTHTIIEFRRKLHT 138 (603)
T ss_pred hhhccCCccEEEEecccCc
Confidence 3333334445667777765
No 22
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=96.94 E-value=0.0067 Score=53.19 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=46.1
Q ss_pred CcccccchhhHHHHHHHHHHHhhe-eeccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 036242 200 NRDYIHRNIGIALFFLATVQVFAL-LLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLL 263 (330)
Q Consensus 200 ~~~~~H~~iGi~~~~l~~~Q~l~g-~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~ 263 (330)
-+.++|-+.|+++..|+.++.... .+.+++ ++.++..|..++.+++++-.++..+|....
T Consensus 112 lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~----~~~~R~lHi~lN~~~l~Lf~~q~itG~~il 172 (175)
T PF13301_consen 112 LFWSPHLWAGLAVVGLMAFSAALVPQIQKGN----RPWARRLHIYLNSLALLLFAWQAITGWRIL 172 (175)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHHHHccCC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355689999999999998887553 333322 456777899999999999999999998653
No 23
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.79 E-value=0.0096 Score=52.68 Aligned_cols=96 Identities=15% Similarity=0.043 Sum_probs=69.9
Q ss_pred CchhhhhhHhhHHHHHHHH-HHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHH
Q 036242 164 NPAWFYLHVACQVSAYIIG-VAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHW 242 (330)
Q Consensus 164 ~~~Wf~~H~~~q~~~~~l~-i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~ 242 (330)
....+..|..+|.+++.+. -+|+.++-.... ..+.+...|..+=++.+++.++=...++... .+.+..++-.|.
T Consensus 32 ~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~--~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~---~~~~~~~~~~H~ 106 (191)
T cd08760 32 SDTLIKAHGVLMAIAWGILMPIGALLARYFLL--GDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV---QGGGGSLNNAHA 106 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcCcch
Confidence 4568899999999997775 456555433211 2233455999988888888877777776653 233455667899
Q ss_pred HHHHHHHHHHHHHHHHhccccC
Q 036242 243 AVGYAIIVTSVFNVLKGLSLLD 264 (330)
Q Consensus 243 ~~G~~~~ilai~ni~~Gl~l~~ 264 (330)
++|.++++|.++|...|+-...
T Consensus 107 ~lGl~~~~l~~lQ~~~G~~~~~ 128 (191)
T cd08760 107 ILGIIVLALAILQPLLGLLRPH 128 (191)
T ss_pred hhhHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999996543
No 24
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=96.70 E-value=0.0043 Score=51.46 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=65.8
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHH
Q 036242 168 FYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYA 247 (330)
Q Consensus 168 f~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~ 247 (330)
|..|..+|++++++...-.++..........+.....|..+.++.+++.++=....+.... .+.+.-+.-.|-++|.+
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~--~~~~~h~~s~Hs~lGl~ 79 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHN--AGGIANLYSLHSWLGLA 79 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCcccchhHHHHHHHH
Confidence 4679999999987655444444443221011122338999999988888887777766554 22334556679999999
Q ss_pred HHHHHHHHHHHhcccc
Q 036242 248 IIVTSVFNVLKGLSLL 263 (330)
Q Consensus 248 ~~ilai~ni~~Gl~l~ 263 (330)
+++|...+...|+...
T Consensus 80 ~~~l~~~q~~~G~~~~ 95 (131)
T cd08554 80 TVLLFLLQFLSGFVLF 95 (131)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998654
No 25
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=96.60 E-value=0.011 Score=48.84 Aligned_cols=94 Identities=16% Similarity=0.125 Sum_probs=64.2
Q ss_pred hhHhhHHHHHHHH-HHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHHH
Q 036242 170 LHVACQVSAYIIG-VAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAI 248 (330)
Q Consensus 170 ~H~~~q~~~~~l~-i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~~ 248 (330)
+|..+|.+++++. ..|..+.=........+.+...|..+.++.+++.++=...++...... .++.++-.|.++|.++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~--~~~~~~s~H~~lGl~~ 78 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNES--GIANFYSLHSWLGLAA 78 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCCccchhHHHHHHH
Confidence 4999999998654 445444332111101223334899999988888887777776554322 2345667799999999
Q ss_pred HHHHHHHHHHhccccCC
Q 036242 249 IVTSVFNVLKGLSLLDP 265 (330)
Q Consensus 249 ~ilai~ni~~Gl~l~~~ 265 (330)
++|...|...|+-....
T Consensus 79 ~~l~~~Q~~~G~~~~~~ 95 (129)
T smart00665 79 FVLAGLQWLSGFLRPLP 95 (129)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999976543
No 26
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=96.28 E-value=0.02 Score=47.60 Aligned_cols=92 Identities=13% Similarity=0.140 Sum_probs=62.4
Q ss_pred hhHhhHHHHHHHHHHHHHHHhhhc--CCccCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHH
Q 036242 170 LHVACQVSAYIIGVAGWATGIDLS--SGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYA 247 (330)
Q Consensus 170 ~H~~~q~~~~~l~i~g~~~~~~~~--~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~ 247 (330)
+|..+|.+++.+...-.++..... .....+.+...|..+-++.+++.++=....+..... +..+.++-.|.++|.+
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~--~~~~h~~s~H~~lG~~ 78 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNR--NGKPHFKSWHSILGLA 78 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCCCCCCchhhhhHH
Confidence 499999999887654333444431 110112233499999988888877777666543222 2234556679999999
Q ss_pred HHHHHHHHHHHhcccc
Q 036242 248 IIVTSVFNVLKGLSLL 263 (330)
Q Consensus 248 ~~ilai~ni~~Gl~l~ 263 (330)
++++.+.|...|+-..
T Consensus 79 ~~~l~~~Q~~~G~~~~ 94 (137)
T PF03188_consen 79 TFVLALLQPLLGFFRF 94 (137)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999754
No 27
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.20 E-value=0.015 Score=51.28 Aligned_cols=97 Identities=12% Similarity=0.210 Sum_probs=68.2
Q ss_pred CchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCc---cCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHH
Q 036242 164 NPAWFYLHVACQVSAYIIGVAGWATGIDLSSGI---SSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIY 240 (330)
Q Consensus 164 ~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~---~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~ 240 (330)
....|..|..+|.+++++.....++.+...... +.+.....|.++-++.+++.++=....+.-. +.+.++-++-.
T Consensus 17 ~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~--~~~~~~hf~s~ 94 (183)
T cd08761 17 GTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNK--ERNGKPHFTSW 94 (183)
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCCCccch
Confidence 456899999999999887766655555422110 1112223999999988888877665554332 22334566677
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 036242 241 HWAVGYAIIVTSVFNVLKGLSL 262 (330)
Q Consensus 241 H~~~G~~~~ilai~ni~~Gl~l 262 (330)
|.|+|.+++++.+.|...|+..
T Consensus 95 H~~lGl~~~~l~~~Q~~~G~~~ 116 (183)
T cd08761 95 HGILGLVTVILIVLQALGGLAL 116 (183)
T ss_pred hHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999954
No 28
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.00 E-value=0.051 Score=46.13 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=69.6
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHH
Q 036242 166 AWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAV 244 (330)
Q Consensus 166 ~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~ 244 (330)
.-|.+|..+|++++++...-.++.+..... .++...+ .|.+++++.+++.++-...-+..+... ..+-+.-.|-|+
T Consensus 5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~-~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~~~hf~SlHswl 81 (143)
T cd08763 5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRN-ETKRSTKILHGLLHIMALVISLVGLVAVFDYHQAN--GYPDMYSLHSWC 81 (143)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHHHH
Confidence 368899999999999877766666654321 1222223 999999999998888776665444332 234556679999
Q ss_pred HHHHHHHHHHHHHHhcccc
Q 036242 245 GYAIIVTSVFNVLKGLSLL 263 (330)
Q Consensus 245 G~~~~ilai~ni~~Gl~l~ 263 (330)
|.++++|-..+...|+..+
T Consensus 82 Gl~t~~L~~lQ~~~G~~~f 100 (143)
T cd08763 82 GILTFVLYFLQWLIGFSFF 100 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998653
No 29
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.88 E-value=0.046 Score=49.43 Aligned_cols=98 Identities=13% Similarity=0.045 Sum_probs=68.1
Q ss_pred CchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHH
Q 036242 164 NPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHW 242 (330)
Q Consensus 164 ~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~ 242 (330)
+...|.+|..+|++++++...=-++.+..... ..+...+ .|..+..+.+++.++-....+-.+....+..+-+.-.|-
T Consensus 20 ~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~-~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHS 98 (214)
T cd08764 20 PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRN-TRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHS 98 (214)
T ss_pred CCceEeecHHHHHHHHHHHHHHHHHHhccCcc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHH
Confidence 34579999999999997766555555554331 1111223 999999999998888755544444333223344455699
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 036242 243 AVGYAIIVTSVFNVLKGLSL 262 (330)
Q Consensus 243 ~~G~~~~ilai~ni~~Gl~l 262 (330)
|+|.++++|-..+...|+..
T Consensus 99 wlGl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 99 WLGLTAVILFSLQWVGGFVS 118 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999843
No 30
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.48 E-value=0.11 Score=44.22 Aligned_cols=93 Identities=15% Similarity=0.077 Sum_probs=64.9
Q ss_pred chhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHH
Q 036242 165 PAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWA 243 (330)
Q Consensus 165 ~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~ 243 (330)
...|.+|..+|++++++...=-++.+.... .++.... .|.++=++.+++.++-....+..+... ..+-+.-.|-|
T Consensus 5 ~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~--~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~SlHSw 80 (144)
T cd08766 5 GLIFNVHPVLMVIGFIFLAGEAILAYKTVP--GSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSLHSW 80 (144)
T ss_pred cceeeccHHHHHHHHHHHHHHHHHHhhccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccHHHH
Confidence 458999999999998776655566666432 2222223 898888888877777665544433322 22334456999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 036242 244 VGYAIIVTSVFNVLKGLS 261 (330)
Q Consensus 244 ~G~~~~ilai~ni~~Gl~ 261 (330)
+|.++++|-..+...|+.
T Consensus 81 lGl~t~~L~~lQ~~~G~~ 98 (144)
T cd08766 81 LGIGTISLFGLQWLFGFV 98 (144)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999975
No 31
>PLN02680 carbon-monoxide oxygenase
Probab=94.26 E-value=0.25 Score=45.23 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=63.6
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHH
Q 036242 166 AWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAV 244 (330)
Q Consensus 166 ~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~ 244 (330)
.-|.+|..+|++++++...-.++.+.... .++...+ .|..+=.+.+++.++-....+-.+.. +.++-+.-.|-|+
T Consensus 45 ~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~--~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfySlHSWl 120 (232)
T PLN02680 45 LIFNVHPVLMVIGLVLLNGEAMLAYKTVP--GTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYSLHSWL 120 (232)
T ss_pred ceEechHHHHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccccccHHHHH
Confidence 36889999999999996655555554332 2222223 78888777777776665553333322 2234444569999
Q ss_pred HHHHHHHHHHHHHHhccc
Q 036242 245 GYAIIVTSVFNVLKGLSL 262 (330)
Q Consensus 245 G~~~~ilai~ni~~Gl~l 262 (330)
|.++++|-..|...|+..
T Consensus 121 Gl~t~iL~~lQ~~~Gf~~ 138 (232)
T PLN02680 121 GLACLFLFSLQWAAGFVT 138 (232)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999865
No 32
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=94.26 E-value=0.27 Score=39.50 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=57.2
Q ss_pred CCchhhhhhHhhHHHHHHH-HHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHH
Q 036242 163 GNPAWFYLHVACQVSAYII-GVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYH 241 (330)
Q Consensus 163 ~~~~Wf~~H~~~q~~~~~l-~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H 241 (330)
+.+...+.|..+|++++++ .-+|+++..... .+|--.=++-+++.++-.+.|....+.. + ..+.+-.|
T Consensus 13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~~s---------r~~~~~q~~~~~l~~~g~~~g~~~~~~~-p-~lyp~n~H 81 (105)
T PF10348_consen 13 PHRSALYAHIVLMTLAWVILYPIGLVLGNARS---------RWHLPVQTVFLVLMILGLFLGSVYNGST-P-DLYPNNAH 81 (105)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHccc---------hHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-CCCCCCHH
Confidence 4567899999999998655 478887766622 1344333333333344444443322211 1 14567789
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 036242 242 WAVGYAIIVTSVFNVLKGLS 261 (330)
Q Consensus 242 ~~~G~~~~ilai~ni~~Gl~ 261 (330)
.-+|.+++++.+++...|+.
T Consensus 82 ~k~g~il~~l~~~q~~~gv~ 101 (105)
T PF10348_consen 82 GKMGWILFVLMIVQVILGVI 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999874
No 33
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=94.10 E-value=0.51 Score=41.48 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=66.2
Q ss_pred CchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCc-cCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhH--
Q 036242 164 NPAWFYLHVACQVSAYIIGVAGWATGIDLSSGI-SSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNI-- 239 (330)
Q Consensus 164 ~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~-~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~-- 239 (330)
++..|.+|..+|++++++.-.=.++.+...... .++...+ .|..+=.+.+++.++-....+-.+... .+.|.
T Consensus 31 ~~~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~----~~~nlyS 106 (179)
T cd08762 31 SSKNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH----HTANLYS 106 (179)
T ss_pred CCCceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----Cccchhh
Confidence 455899999999999988755455555532200 0111123 898888888888877766665544332 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Q 036242 240 YHWAVGYAIIVTSVFNVLKGLSLL 263 (330)
Q Consensus 240 ~H~~~G~~~~ilai~ni~~Gl~l~ 263 (330)
+|-|+|.++++|-..|...|+...
T Consensus 107 lHSWlGl~t~~Lf~lQ~~~Gf~~f 130 (179)
T cd08762 107 LHSWVGICTVALFTCQWVMGFTSF 130 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999654
No 34
>PLN02351 cytochromes b561 family protein
Probab=93.09 E-value=0.99 Score=41.52 Aligned_cols=119 Identities=10% Similarity=0.008 Sum_probs=72.3
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHH
Q 036242 167 WFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVG 245 (330)
Q Consensus 167 Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G 245 (330)
.|.+|..+|++++++...=-++.+.... .++...+ .|..+=.+.+++.++-... -.+. .++..+-+--.|-|+|
T Consensus 50 ffn~HP~lMviGfi~L~geAILvYR~~~--~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~-~~~~i~nlySLHSWlG 124 (242)
T PLN02351 50 YAVLHPLLMVIGFILISGEAILVHRWLP--GSRKTKKSVHLWLQGLALASGVFGIWT--KFHG-QDGIVANFYSLHSWMG 124 (242)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhhccc--ccchHHHHHHHHHHHHHHHHHHHHHHH--HHhc-ccCCccchhHHHHHHH
Confidence 4579999999999887766666666543 2222333 8877766666666555444 1111 1111232444599999
Q ss_pred HHHHHHHHHHHHHhccccCCC----------cchhhHHHHHHHHHHHHHHHHhhe
Q 036242 246 YAIIVTSVFNVLKGLSLLDPE----------IQWWHAYIVTAISSGIISAALEAI 290 (330)
Q Consensus 246 ~~~~ilai~ni~~Gl~l~~~~----------~~~~~~~~~~v~~~~~~~i~lev~ 290 (330)
.++++|-..|-..|+...-.+ ..|-..++..+-+++++.+.+-+.
T Consensus 125 l~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~ 179 (242)
T PLN02351 125 LICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLL 179 (242)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998643211 113333444444555555555554
No 35
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=92.61 E-value=0.14 Score=44.22 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=60.0
Q ss_pred hhhHhhHHHHHHHHHHHHHHHhh----hcCCccCCCcccccchhhHHHHHHHHHHHhheeec------------------
Q 036242 169 YLHVACQVSAYIIGVAGWATGID----LSSGISSLNRDYIHRNIGIALFFLATVQVFALLLR------------------ 226 (330)
Q Consensus 169 ~~H~~~q~~~~~l~i~g~~~~~~----~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~r------------------ 226 (330)
..|+..-++-+++.+.|+.+.+. .............|..+|++.+++.++..+..+.+
T Consensus 10 ~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (188)
T PF00033_consen 10 LLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYR 89 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhh
Confidence 45776666666666677766532 11100001112399999999999999999988777
Q ss_pred cC--CCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242 227 PK--PDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL 262 (330)
Q Consensus 227 p~--~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l 262 (330)
+. +..+....+|...++.-.+++++.++.+.+|+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~ 127 (188)
T PF00033_consen 90 LFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM 127 (188)
T ss_dssp TT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1123345567788888888888888889999888
No 36
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=91.84 E-value=1.6 Score=37.50 Aligned_cols=98 Identities=21% Similarity=0.148 Sum_probs=63.5
Q ss_pred CchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCc-cCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHH
Q 036242 164 NPAWFYLHVACQVSAYIIGVAGWATGIDLSSGI-SSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYH 241 (330)
Q Consensus 164 ~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~-~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H 241 (330)
++.-|.+|..+|++++++.-.=.++.+...... .++.... .|.++=.+.+++.++-...-+..+... ..+-+.-.|
T Consensus 8 ~~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~~~fySlH 85 (153)
T cd08765 8 GAAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NIPNMYSLH 85 (153)
T ss_pred CCCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHH
Confidence 455788999999999888544445555421100 1112222 788777777766666555444433322 234455679
Q ss_pred HHHHHHHHHHHHHHHHHhcccc
Q 036242 242 WAVGYAIIVTSVFNVLKGLSLL 263 (330)
Q Consensus 242 ~~~G~~~~ilai~ni~~Gl~l~ 263 (330)
-|+|.++++|-..|...|+..+
T Consensus 86 SwlGl~t~~l~~lQ~~~Gf~~f 107 (153)
T cd08765 86 SWVGLAAVILYPLQLVLGISVY 107 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998655
No 37
>PLN02810 carbon-monoxide oxygenase
Probab=91.52 E-value=1.5 Score=39.98 Aligned_cols=93 Identities=15% Similarity=0.040 Sum_probs=66.6
Q ss_pred chhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHH
Q 036242 165 PAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWA 243 (330)
Q Consensus 165 ~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~ 243 (330)
+.=|.+|-.+|++++++.-.=-++.+.... ..+...+ .|..+=.+.+++.++-....|-.+... + .+-+--+|-|
T Consensus 44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~--~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~-~-i~nlySLHSW 119 (231)
T PLN02810 44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLP--LKKEVKKLIHLVLHAIALILGIFGICAAFKNHNES-G-IANLYSLHSW 119 (231)
T ss_pred CceeeehHHHHHHHHHHHhhHHHHHhhccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-C-CCceeeHHHH
Confidence 447899999999999887766677775433 1222233 898888888888777666655444422 2 2334446999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 036242 244 VGYAIIVTSVFNVLKGLS 261 (330)
Q Consensus 244 ~G~~~~ilai~ni~~Gl~ 261 (330)
+|..+++|-..|-..|+.
T Consensus 120 lGl~tv~Lf~lQw~~Gf~ 137 (231)
T PLN02810 120 LGIGIISLYGIQWIYGFI 137 (231)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999994
No 38
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=91.19 E-value=1.9 Score=36.04 Aligned_cols=76 Identities=13% Similarity=0.078 Sum_probs=44.0
Q ss_pred cchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHHH
Q 036242 205 HRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIIS 284 (330)
Q Consensus 205 H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~~~~~~~~~v~~~~~~~ 284 (330)
+..+++..+++.++=.+.=+ |+.+ .++++..+..+.||.++.+=+..+..+. ..+....+.++.+..+++
T Consensus 33 ~~i~~~Y~i~fg~ll~~~E~-~~~~---i~~~~~FL~~~~GRGlfyif~G~l~~~~------~~~~~i~g~~~~~~G~~~ 102 (136)
T PF08507_consen 33 SFILGVYCILFGLLLILAEF-RWPF---IRKYFGFLYSYIGRGLFYIFLGTLCLGQ------SILSIIIGLLLFLVGVIY 102 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccHH---HHHhHhHHHhHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHH
Confidence 55556555555544433322 1111 6788899999999998877666666665 212223344444455556
Q ss_pred HHHhhe
Q 036242 285 AALEAI 290 (330)
Q Consensus 285 i~lev~ 290 (330)
+.+...
T Consensus 103 i~l~~~ 108 (136)
T PF08507_consen 103 IILGFF 108 (136)
T ss_pred HHHHHH
Confidence 666554
No 39
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=89.93 E-value=0.49 Score=29.83 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=26.8
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhccccC
Q 036242 233 YRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLD 264 (330)
Q Consensus 233 ~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~ 264 (330)
.|+.+..+|+++|..+.+.-+.-+.+|+.+..
T Consensus 1 ~r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~~ 32 (34)
T PF13172_consen 1 FRKFWRKIHRWLGLIAAIFLLLLALTGALLNF 32 (34)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36778889999999999999999999987653
No 40
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=89.21 E-value=1.4 Score=35.80 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=50.3
Q ss_pred ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcccc----CCCcchhhHHHHHHHH
Q 036242 204 IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLL----DPEIQWWHAYIVTAIS 279 (330)
Q Consensus 204 ~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~----~~~~~~~~~~~~~v~~ 279 (330)
.|-++|.++.++.++-.+.++.+|.++.+.| |.+++..+++..+..+.+=...- ++.-.|.+.|.....+
T Consensus 30 inliiG~vT~l~VLvtii~afvf~~~~p~p~------~iffavcI~l~~~s~~lLI~WYR~gdl~Pkfr~li~~~~~~iv 103 (118)
T PF10856_consen 30 INLIIGAVTSLFVLVTIISAFVFPQDPPKPL------HIFFAVCILLICISAILLIFWYRQGDLDPKFRYLIYYNCFSIV 103 (118)
T ss_pred EEeehHHHHHHHHHHHHhheEEecCCCCCce------EEehHHHHHHHHHHHHhheeehhcCCCChhHHHHHHHHHHHHH
Confidence 8999999999999999999999987654333 88888888888888877654432 2333465655444433
Q ss_pred H
Q 036242 280 S 280 (330)
Q Consensus 280 ~ 280 (330)
+
T Consensus 104 l 104 (118)
T PF10856_consen 104 L 104 (118)
T ss_pred H
Confidence 3
No 41
>COG5658 Predicted integral membrane protein [Function unknown]
Probab=84.98 E-value=2.5 Score=37.97 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=42.3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHHHHHHhhee
Q 036242 232 KYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIISAALEAIT 291 (330)
Q Consensus 232 ~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~~~~~~~~~v~~~~~~~i~lev~~ 291 (330)
+.+..|++.|+++|-..++.+.+..+.+.......+-+...+...++..+...+.+.+..
T Consensus 40 ~d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~~~~~~~~~v~~~~~~~Il~li~~ls~~l 99 (204)
T COG5658 40 PDQAMWKKAGLFLGPLLVIGGLVTRYMSLLAGGQGQMLLAVALFAAVLILFLILLLSAIL 99 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999998877766655565555555554444444444443
No 42
>PF13630 SdpI: SdpI/YhfL protein family
Probab=84.21 E-value=2 Score=31.68 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=28.1
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHhccccC
Q 036242 232 KYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLD 264 (330)
Q Consensus 232 ~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~ 264 (330)
+....|+..|+..|...++.|++.+..|+-...
T Consensus 18 ~s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~~ 50 (76)
T PF13630_consen 18 KSDENWKKAHRFAGKIFIIGGIVLLIIGIIILF 50 (76)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344689999999999999999999998887654
No 43
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=84.16 E-value=1.9 Score=27.77 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=24.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242 234 RLYWNIYHWAVGYAIIVTSVFNVLKGLSL 262 (330)
Q Consensus 234 R~~~~~~H~~~G~~~~ilai~ni~~Gl~l 262 (330)
|+.+...|+|+|.++-++-.+-+++|...
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~ 29 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVM 29 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 56778899999999988888888888653
No 44
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=83.09 E-value=6.8 Score=33.54 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=71.6
Q ss_pred hhhhhhhhhH----hhhhhhHHHHh---hhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhh---------------
Q 036242 135 RKRNFHQFLS----ILMPMGAMMAR---YLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDL--------------- 192 (330)
Q Consensus 135 ~~~~~Hg~lM----il~p~gi~~aR---~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~--------------- 192 (330)
..+..|-+.. +++..|..+.. ............+.+|..+-.+-.++.+.=+...+..
T Consensus 7 ~~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T PF00033_consen 7 FTRLLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP 86 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence 4556776555 66677777652 1111112345678899887766555554444444443
Q ss_pred ---cCC----ccCCCcccccchhhHHHHHHHHHHHhheeec--------cCC---CCCCcchhhHHHHHHHHHHHHHHHH
Q 036242 193 ---SSG----ISSLNRDYIHRNIGIALFFLATVQVFALLLR--------PKP---DHKYRLYWNIYHWAVGYAIIVTSVF 254 (330)
Q Consensus 193 ---~~~----~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~r--------p~~---~~~~R~~~~~~H~~~G~~~~ilai~ 254 (330)
... ...+..+...+..-++++.+..++++.|++. +.. ....+.....+|.+.+.+++++-++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~ 166 (188)
T PF00033_consen 87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIII 166 (188)
T ss_dssp HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0111222277777788888888888888655 111 1123456788888888888777776
Q ss_pred HHHHhc
Q 036242 255 NVLKGL 260 (330)
Q Consensus 255 ni~~Gl 260 (330)
=++.++
T Consensus 167 Hi~~a~ 172 (188)
T PF00033_consen 167 HIYAAI 172 (188)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 45
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=83.09 E-value=3.8 Score=37.04 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=25.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 036242 235 LYWNIYHWAVGYAIIVTSVFNVLKGLSLL 263 (330)
Q Consensus 235 ~~~~~~H~~~G~~~~ilai~ni~~Gl~l~ 263 (330)
..+|...+.....+++++++.+.+|+.++
T Consensus 107 gk~N~~QKl~y~~i~~~~~~~i~TGl~l~ 135 (217)
T PRK10179 107 GKYNAGQKMMFWSIMSMIFVLLVTGVIIW 135 (217)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999886
No 46
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=82.97 E-value=11 Score=34.71 Aligned_cols=92 Identities=23% Similarity=0.271 Sum_probs=57.1
Q ss_pred ccchhhhhhhhhH-hhhhhhH--HHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhh--cCCccCCCcc----
Q 036242 132 SRQRKRNFHQFLS-ILMPMGA--MMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDL--SSGISSLNRD---- 202 (330)
Q Consensus 132 ~~~~~~~~Hg~lM-il~p~gi--~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~--~~~~~~~~~~---- 202 (330)
+++..+.+|..|- +-+++++ +.+-+.-+-..+-+.-..+|-.+-+..+++..+=++.||.. ..+ ......
T Consensus 84 ~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg-~~~~~Rs~lm 162 (245)
T KOG1619|consen 84 SKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPG-SPESYRSRLM 162 (245)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCccHHhhhh
Confidence 3456678898887 3333332 22222111111224455699999988888877766666653 221 111111
Q ss_pred cccchhhHHHHHHHHHHHhhee
Q 036242 203 YIHRNIGIALFFLATVQVFALL 224 (330)
Q Consensus 203 ~~H~~iGi~~~~l~~~Q~l~g~ 224 (330)
-.|..+|+.++++++.|.+.|+
T Consensus 163 P~H~~~Gl~~f~lai~ta~~Gl 184 (245)
T KOG1619|consen 163 PWHVFLGLAIFILAIVTALTGL 184 (245)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 2999999999999999999998
No 47
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=82.12 E-value=10 Score=33.26 Aligned_cols=116 Identities=15% Similarity=0.164 Sum_probs=72.3
Q ss_pred hhhhhhH--hhhhhhHHHHhhhccccc---CCc--hhhh-----------hhHhhHHHHHHHHHHHHHHHhhhcCCccCC
Q 036242 138 NFHQFLS--ILMPMGAMMARYLKVFRF---GNP--AWFY-----------LHVACQVSAYIIGVAGWATGIDLSSGISSL 199 (330)
Q Consensus 138 ~~Hg~lM--il~p~gi~~aR~~k~~~~---~~~--~Wf~-----------~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~ 199 (330)
..|+++| +++|.+....|..-..+. ... .|.. .|.+.+....++...+-.-.+...
T Consensus 4 liHP~lm~~~vf~~~~~~~~lG~q~R~rR~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~------ 77 (175)
T PF13301_consen 4 LIHPVLMGLLVFPVGGYAIYLGWQWRQRRLQENHGRWLTGGVVVAVLIALAYSIARAIFLILALTGTRKELVKL------ 77 (175)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhccccccchhcccchhhHHHHHHHHHHHHHHHHHhh------
Confidence 5799999 558998877765422210 111 1221 123334444444444433333311
Q ss_pred CcccccchhhHHHHHHHHHHHhheee----ccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCC
Q 036242 200 NRDYIHRNIGIALFFLATVQVFALLL----RPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDP 265 (330)
Q Consensus 200 ~~~~~H~~iGi~~~~l~~~Q~l~g~~----rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~ 265 (330)
.....|..+|..+++++.+-.+.|.. +.++ ++.--|-|.|.++..|=.++..+.-+.+..
T Consensus 78 ~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~------lf~spH~~~Gl~~~~L~~~s~al~~~i~~g 141 (175)
T PF13301_consen 78 KARDRHYRLGFALLAFMGLGALGGQLGTYRQNGK------LFWSPHLWAGLAVVGLMAFSAALVPQIQKG 141 (175)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCCC------CccCchHHHHHHHHHHHHHHHHHHHHHccC
Confidence 12348999999999999999887742 2222 444449999999999999999888887753
No 48
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=80.41 E-value=1.4 Score=34.96 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=23.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 036242 234 RLYWNIYHWAVGYAIIVTSVFNVLKGLSLL 263 (330)
Q Consensus 234 R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~ 263 (330)
|+.....|+++||+-+++..+....|+.+.
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i~ 31 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALFIA 31 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 444556799999999999988888888764
No 49
>PRK11513 cytochrome b561; Provisional
Probab=79.55 E-value=6.8 Score=34.22 Aligned_cols=27 Identities=33% Similarity=0.595 Sum_probs=23.1
Q ss_pred cccchhhHHHHHHHHHHHhheeeccCC
Q 036242 203 YIHRNIGIALFFLATVQVFALLLRPKP 229 (330)
Q Consensus 203 ~~H~~iGi~~~~l~~~Q~l~g~~rp~~ 229 (330)
..|..+|+++++++++-.+..+.++.|
T Consensus 43 ~~H~s~G~~vl~L~v~Rl~~r~~~~~P 69 (176)
T PRK11513 43 MIHVSCGISILVLMVVRLLLRLKYPTP 69 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 379999999999999999988776543
No 50
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=78.75 E-value=3.3 Score=39.09 Aligned_cols=82 Identities=18% Similarity=0.172 Sum_probs=50.8
Q ss_pred HhhHHHHHHHHHHHHHHHhhhcCCc-cCCC-cccccchhhHHHHHHHHHHHhheeeccCC---CCCCcchhhHHHHHHHH
Q 036242 172 VACQVSAYIIGVAGWATGIDLSSGI-SSLN-RDYIHRNIGIALFFLATVQVFALLLRPKP---DHKYRLYWNIYHWAVGY 246 (330)
Q Consensus 172 ~~~q~~~~~l~i~g~~~~~~~~~~~-~~~~-~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~---~~~~R~~~~~~H~~~G~ 246 (330)
..+..+..+++++|++-.+..-... +.++ +---|-..|+.+++-.++-.+.-+.|.-+ ..+.|+.|.++=...|-
T Consensus 155 ~~Liav~~~~~li~~iw~~~Ll~~~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI~RQirN~ys~~Er~~W~~lVl~mGs 234 (347)
T PF10951_consen 155 NILIAVPILCALIGWIWAIVLLSSSDEHPAYFVAGHVMFGLACICTSLIALVATIARQIRNTYSEKERWKWPKLVLVMGS 234 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccceehhHHHhhHHHHHHHHHHHHHHHHHHHhccccHHHhhhhHHHHHHHhh
Confidence 3455567788888888777654310 2222 22289999999999888877777766543 34566666654444444
Q ss_pred HHHHHHH
Q 036242 247 AIIVTSV 253 (330)
Q Consensus 247 ~~~ilai 253 (330)
+.+++|+
T Consensus 235 i~~l~Gl 241 (347)
T PF10951_consen 235 ISILWGL 241 (347)
T ss_pred HHHHhhh
Confidence 4444443
No 51
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=76.64 E-value=28 Score=29.70 Aligned_cols=54 Identities=17% Similarity=0.020 Sum_probs=30.5
Q ss_pred hhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCc---ccccchhhHHHHHHHHHHHhhe
Q 036242 169 YLHVACQVSAYIIGVAGWATGIDLSSGISSLNR---DYIHRNIGIALFFLATVQVFAL 223 (330)
Q Consensus 169 ~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~---~~~H~~iGi~~~~l~~~Q~l~g 223 (330)
..|+..-++-+++.+.|+.+-...... ..... ...|.++|++++++.++=.+..
T Consensus 8 ~~HW~~a~~~i~l~~tG~~~~~~~~~~-~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 8 ILHWLNALSFIALIATGLWIHFPPPGL-YFGDFGGVRNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc-cccccchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 356665555555555565544332221 11111 3489999999988886655544
No 52
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=76.40 E-value=18 Score=31.85 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=23.2
Q ss_pred cccchhhHHHHHHHHHHHhheeeccCC
Q 036242 203 YIHRNIGIALFFLATVQVFALLLRPKP 229 (330)
Q Consensus 203 ~~H~~iGi~~~~l~~~Q~l~g~~rp~~ 229 (330)
..|+.+|+.+++++++-.+..+..|.+
T Consensus 48 ~~Hks~Gi~vl~L~v~Rl~wrl~~~~p 74 (181)
T COG3038 48 ELHKSIGILVLALMVLRLLWRLRNPAP 74 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 399999999999999999887776554
No 53
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=76.04 E-value=8.9 Score=29.33 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=27.1
Q ss_pred ccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242 226 RPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL 262 (330)
Q Consensus 226 rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l 262 (330)
|++...+.|+ +...|+.+|....+.-++-+++|+..
T Consensus 50 r~~~~~~~r~-~~dlH~~~G~~~~~~ll~~a~TG~~~ 85 (88)
T PF13703_consen 50 RPKRSKSKRR-WFDLHRVLGLWFLPFLLVIALTGLFF 85 (88)
T ss_pred ccCCCCccCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444345556 66689999999999999999888754
No 54
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=75.29 E-value=1.4 Score=29.44 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=20.7
Q ss_pred cchhh-HHHHHHHHHHHHHHHHhheeeee
Q 036242 267 IQWWH-AYIVTAISSGIISAALEAITWTI 294 (330)
Q Consensus 267 ~~~~~-~~~~~v~~~~~~~i~lev~~~~~ 294 (330)
+.|.. .|.+++++-+.+++.|.+++...
T Consensus 2 p~wlt~iFsvvIil~If~~iGl~IyQkik 30 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIFAWIGLSIYQKIK 30 (49)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35665 78888877778888999987544
No 55
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=72.63 E-value=38 Score=35.71 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=45.1
Q ss_pred chhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCC-------------ccccc---chhhHHHHHHHHHHHhheeeccC
Q 036242 165 PAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLN-------------RDYIH---RNIGIALFFLATVQVFALLLRPK 228 (330)
Q Consensus 165 ~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~-------------~~~~H---~~iGi~~~~l~~~Q~l~g~~rp~ 228 (330)
+....+-.++...++..++.|++.+=+.+....... ++..+ ..+. +.+++.++|.+.|...-.
T Consensus 387 ~~~~~~~~il~~~gi~sii~G~lyG~fFG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-lsl~iGvi~i~~g~~l~~ 465 (646)
T PRK05771 387 EGLKRLLKILIYLGISTIIWGLLTGSFFGFSLPIFLPGGYLELPEGYPSLSTENDVMTILI-ISLLIGVIHLFLGLLLGF 465 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcCccccccccccccccCCccccCCCccHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 345566666666777777777666654442100000 00011 1122 233455677776643211
Q ss_pred C-CCCCcchhhHHHHHHHHHHHHHHHHHHHHhc
Q 036242 229 P-DHKYRLYWNIYHWAVGYAIIVTSVFNVLKGL 260 (330)
Q Consensus 229 ~-~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl 260 (330)
. .-+.|.+..-+--.+|..++++|++-+.++.
T Consensus 466 ~~~~~~~~~~~a~~~~~~w~l~~~g~~~~~~~~ 498 (646)
T PRK05771 466 INNVRKGDYKDAFLAQLGWLLILLGILLIVLGG 498 (646)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 0011222222333477777777777777664
No 56
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=69.38 E-value=5.3 Score=31.83 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHhheeeccCCC----CCCcchhhHHHHHHHHHHHHHHHHHHH
Q 036242 208 IGIALFFLATVQVFALLLRPKPD----HKYRLYWNIYHWAVGYAIIVTSVFNVL 257 (330)
Q Consensus 208 iGi~~~~l~~~Q~l~g~~rp~~~----~~~R~~~~~~H~~~G~~~~ilai~ni~ 257 (330)
.|.+.++++.++.+.+ .|+.+- .........+|+++|+.+++++++=..
T Consensus 1 ~G~~a~~~l~~~~~l~-~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~ 53 (125)
T PF01794_consen 1 LGILAFALLPLVFLLG-LRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHGV 53 (125)
T ss_pred CHHHHHHHHHHHHHHH-HhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777787776 554321 111122455999999999999876543
No 57
>COG4244 Predicted membrane protein [Function unknown]
Probab=69.28 E-value=26 Score=30.27 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=21.4
Q ss_pred CCchhhhhhHhhHHHHHHHHHHHHHHHhh
Q 036242 163 GNPAWFYLHVACQVSAYIIGVAGWATGID 191 (330)
Q Consensus 163 ~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~ 191 (330)
++..|+..-+.....+.+.+.++++.++.
T Consensus 43 ~~~~~~~vs~wn~~~a~i~~~~A~~~g~~ 71 (160)
T COG4244 43 GKDRWFDVSWWNLFAALIAGFFAVIAGLF 71 (160)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45668888888888887777777766665
No 58
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=68.12 E-value=24 Score=31.16 Aligned_cols=61 Identities=20% Similarity=0.368 Sum_probs=38.2
Q ss_pred cccchhhHHHHHHHHHHHhheeeccCC----------CC------------------CCcchhhHHHHHHHHHHHHHHHH
Q 036242 203 YIHRNIGIALFFLATVQVFALLLRPKP----------DH------------------KYRLYWNIYHWAVGYAIIVTSVF 254 (330)
Q Consensus 203 ~~H~~iGi~~~~l~~~Q~l~g~~rp~~----------~~------------------~~R~~~~~~H~~~G~~~~ilai~ 254 (330)
..|.++|++++++.++=.+..+..+.+ .+ +....+|..-++.-.+++++.++
T Consensus 50 ~~H~~~G~~~~~l~l~rl~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~n~~~k~~~~~l~~~~~~ 129 (211)
T TIGR02125 50 FVHFAAGFVLIAVLLFRVYLAFVGKDSRYERFSFRDPLNPKAWIKQLRWYLFLGKHPHKKGGYNPLQFVAYFGFIVLILF 129 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHhhcCCCCHHHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 378899988887777655444432110 00 00011256667777788888899
Q ss_pred HHHHhcccc
Q 036242 255 NVLKGLSLL 263 (330)
Q Consensus 255 ni~~Gl~l~ 263 (330)
.+.+|+.++
T Consensus 130 ~~lTG~~~~ 138 (211)
T TIGR02125 130 MILTGLALY 138 (211)
T ss_pred HHHHHHHHh
Confidence 999998765
No 59
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=67.26 E-value=60 Score=27.54 Aligned_cols=47 Identities=13% Similarity=-0.029 Sum_probs=22.3
Q ss_pred hhhhhhhhhH----hhhhhhHHHHhhhcccccCCchh--hhhhHhhHHHHHHHH
Q 036242 135 RKRNFHQFLS----ILMPMGAMMARYLKVFRFGNPAW--FYLHVACQVSAYIIG 182 (330)
Q Consensus 135 ~~~~~Hg~lM----il~p~gi~~aR~~k~~~~~~~~W--f~~H~~~q~~~~~l~ 182 (330)
..+..|-... +++..|..+..-.+... ....+ +.+|..+-.+-..+.
T Consensus 5 ~~r~~HW~~a~~~i~l~~tG~~~~~~~~~~~-~~~~~~~~~~H~~~G~~~~~~~ 57 (182)
T PF01292_consen 5 FTRILHWLNALSFIALIATGLWIHFPPPGLY-FGDFGGVRNWHVIAGLLLFALL 57 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccc-ccccchHHhHHHHHHHHHHHHH
Confidence 4557786666 44455554432211111 11222 677988555443333
No 60
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=67.06 E-value=49 Score=29.36 Aligned_cols=29 Identities=7% Similarity=0.160 Sum_probs=25.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 036242 235 LYWNIYHWAVGYAIIVTSVFNVLKGLSLL 263 (330)
Q Consensus 235 ~~~~~~H~~~G~~~~ilai~ni~~Gl~l~ 263 (330)
..+|...+..-.+++++.++.+.+|+.++
T Consensus 102 ~kyN~~Qk~~y~~i~~~~~~~~~TGl~m~ 130 (204)
T TIGR01583 102 GKYNAGQKSWYWILVLGGFLMIITGIFMW 130 (204)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788898888888888999999999886
No 61
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=64.33 E-value=57 Score=25.58 Aligned_cols=70 Identities=10% Similarity=-0.036 Sum_probs=42.4
Q ss_pred hHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhhe---eeccCCCCCCcchhhHHHHHHHHH
Q 036242 171 HVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFAL---LLRPKPDHKYRLYWNIYHWAVGYA 247 (330)
Q Consensus 171 H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g---~~rp~~~~~~R~~~~~~H~~~G~~ 247 (330)
|..--+++++++++.|.+..... + .-...-.++++++++|.+.- |++=+. +.+..||....++|.+
T Consensus 9 yviGFiLSiiLT~i~F~~v~~~~-------~--~~~~~~~~i~~lA~iQi~VqL~~FLHm~~--~~~~~~n~~~l~ft~~ 77 (94)
T TIGR02901 9 HVNGFILSLLLTFLALWVALYSD-------L--PLAMGLTIIIIFAFIQAGLQLIMFMHAGE--SEDGKVQIYNIYYSAF 77 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc-------C--ChhHHHHHHHHHHHHHHHHHHHHheeecC--CcccchHHHHHHHHHH
Confidence 45556677888888777765421 1 23334456678899999863 344332 2234588888777765
Q ss_pred HHHH
Q 036242 248 IIVT 251 (330)
Q Consensus 248 ~~il 251 (330)
+.++
T Consensus 78 i~~i 81 (94)
T TIGR02901 78 IALV 81 (94)
T ss_pred HHHH
Confidence 5443
No 62
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=61.83 E-value=13 Score=22.19 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcc
Q 036242 237 WNIYHWAVGYAIIVTSVFNVLKGLS 261 (330)
Q Consensus 237 ~~~~H~~~G~~~~ilai~ni~~Gl~ 261 (330)
++.+|+|++-+.-++=++-+.+|+.
T Consensus 1 ~~~LH~w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 1 FNDLHKWFGDIFALFMLVFAITGLI 25 (27)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567887777766666666666654
No 63
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=60.06 E-value=1e+02 Score=25.74 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccc
Q 036242 237 WNIYHWAVGYAIIVTSVFNVLKGLSLL 263 (330)
Q Consensus 237 ~~~~H~~~G~~~~ilai~ni~~Gl~l~ 263 (330)
+=..|..+-.++..|...+++.|+...
T Consensus 77 iL~~Hi~LA~~~~pL~l~tl~~a~~~~ 103 (133)
T PF04238_consen 77 ILISHIILAIVALPLVLYTLYRALRGR 103 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345688888888888888888888664
No 64
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=59.74 E-value=33 Score=33.15 Aligned_cols=83 Identities=10% Similarity=0.007 Sum_probs=39.4
Q ss_pred chhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHH---HhheeeccCCCCCCc---chhh
Q 036242 165 PAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQ---VFALLLRPKPDHKYR---LYWN 238 (330)
Q Consensus 165 ~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q---~l~g~~rp~~~~~~R---~~~~ 238 (330)
+.=-++++.+.-+.+++...-++..+.... +. ...-..+|-+++++.++- .+.-.+||+...... ...+
T Consensus 120 ~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~--~~---~~~~d~LGrl~~ii~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 194 (340)
T PF12794_consen 120 ERVQRLRRQLRWLIWVLVPLLFISIFAENL--PD---GLARDVLGRLAFIILLLLLAVFLWRLLRPGWGLYQPKPDSWIH 194 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC--ch---hhhhhhHHHHHHHHHHHHHHHHHHHHHccccccccCCCcchhH
Confidence 333455666666777777666666666432 11 123445565554443332 233345665432211 2334
Q ss_pred HHHHHHHHHHHHHH
Q 036242 239 IYHWAVGYAIIVTS 252 (330)
Q Consensus 239 ~~H~~~G~~~~ila 252 (330)
..|.....++++.=
T Consensus 195 ~~~~l~~~~li~~P 208 (340)
T PF12794_consen 195 RLRYLWWPLLILAP 208 (340)
T ss_pred HHHHHHHHHHHHHH
Confidence 44544444444333
No 65
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=58.48 E-value=17 Score=36.95 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHh
Q 036242 248 IIVTSVFNVLKG 259 (330)
Q Consensus 248 ~~ilai~ni~~G 259 (330)
.++..+..+..+
T Consensus 412 ~~~~~~~~~v~~ 423 (507)
T TIGR00910 412 GFLLSIFAFFIS 423 (507)
T ss_pred HHHHHHHHHhee
Confidence 333333334433
No 66
>COG2717 Predicted membrane protein [Function unknown]
Probab=58.30 E-value=59 Score=29.38 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=67.2
Q ss_pred hhhhhHhhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCcc-CCCccc----ccchhhHHHH
Q 036242 139 FHQFLSILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGIS-SLNRDY----IHRNIGIALF 213 (330)
Q Consensus 139 ~Hg~lMil~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~-~~~~~~----~H~~iGi~~~ 213 (330)
++-.+.+++-.....+|+.+ .+.+..+=+.+-+.++..++.=+..-+...-+.+ +..+.+ +=-.+|++.+
T Consensus 50 ~al~fLl~~la~tp~~~~~~-----~~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~~~~~~~d~~~rpyitiG~iaf 124 (209)
T COG2717 50 WALIFLLVTLAVTPLARLLK-----QPKLIRIRRALGLWAFFYALLHFTAYLVLDLGLDLALLGLDLLKRPYITIGMIAF 124 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhHHHHHhHHHHHHHHHH
Confidence 33333344444455566654 3556667788877777776654443333221101 011111 4445666666
Q ss_pred HHHHHHHhhee--eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHH
Q 036242 214 FLATVQVFALL--LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISS 280 (330)
Q Consensus 214 ~l~~~Q~l~g~--~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~~~~~~~~~v~~~ 280 (330)
++++.-.+..+ .+-+-. +.|+.+|++ ++.+++||..=...+... +..+.+.|.++.+.+
T Consensus 125 lll~pLalTS~k~~~rrlG----~rW~~LHrL-vYl~~~L~~lH~~~s~K~---~~~~~vlY~ii~~~l 185 (209)
T COG2717 125 LLLIPLALTSFKWVRRRLG----KRWKKLHRL-VYLALILGALHYLWSVKI---DMPEPVLYAIIFAVL 185 (209)
T ss_pred HHHHHHHHHhhHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHH
Confidence 65555444432 121111 578999995 688888888887773222 223445565544433
No 67
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=58.22 E-value=1.2e+02 Score=27.15 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHH
Q 036242 236 YWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSG 281 (330)
Q Consensus 236 ~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~~~~~~~~~v~~~~ 281 (330)
.|+.+|+. .+.+.+|+.+=.+........+ ...|.++++.++
T Consensus 145 ~Wk~LH~l-~Y~a~~L~~~H~~~~~k~~~~~---~~~y~~~~~~ll 186 (205)
T PRK05419 145 RWQKLHRL-VYLIAILAPLHYLWSVKSDSPE---PLIYAAIVAVLL 186 (205)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhcccccc---HHHHHHHHHHHH
Confidence 68999998 5555667777755543222111 235655554443
No 68
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=57.81 E-value=42 Score=31.76 Aligned_cols=96 Identities=14% Similarity=0.264 Sum_probs=56.1
Q ss_pred ccchhhHHHHHHHHHHHhhee--------eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccC---CCcchhh-
Q 036242 204 IHRNIGIALFFLATVQVFALL--------LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLD---PEIQWWH- 271 (330)
Q Consensus 204 ~H~~iGi~~~~l~~~Q~l~g~--------~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~---~~~~~~~- 271 (330)
.|..+|++.-++..+-.++-+ ..++.+++.+++=+..-|.....+..+|++.++..++.-. ++..-..
T Consensus 45 ~rg~vGI~fav~f~i~lvltLvnL~KHG~~~lp~eKRf~~iGRRwqWyW~~fv~a~~~iS~f~~IDVDR~yl~~~piil~ 124 (296)
T PF10361_consen 45 TRGSVGIAFAVLFAIALVLTLVNLRKHGRLYLPLEKRFYPIGRRWQWYWMLFVCACGLISLFMSIDVDRYYLQGLPIILQ 124 (296)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhcccccchhHHHHHHHHHHHHHHHhhheeeeecHHhcccccHHHH
Confidence 789999887776665544322 2222223334444556777888999999999999988642 2221111
Q ss_pred HHHHHHHHHHHHHHHHhhe-eeeeeeeec
Q 036242 272 AYIVTAISSGIISAALEAI-TWTIVVKRK 299 (330)
Q Consensus 272 ~~~~~v~~~~~~~i~lev~-~~~~~~~~~ 299 (330)
.+.-+++....+.++-|.. .|-.+..|.
T Consensus 125 sfF~~l~~~~~lA~vWE~VRhWGSw~ERQ 153 (296)
T PF10361_consen 125 SFFWYLMQPGTLAAVWEAVRHWGSWQERQ 153 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhhhc
Confidence 3333444445555556655 466555554
No 69
>CHL00070 petB cytochrome b6
Probab=56.23 E-value=37 Score=30.81 Aligned_cols=85 Identities=19% Similarity=0.267 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhhcCCcc-----------CC--Cc--ccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHH
Q 036242 179 YIIGVAGWATGIDLSSGIS-----------SL--NR--DYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWA 243 (330)
Q Consensus 179 ~~l~i~g~~~~~~~~~~~~-----------~~--~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~ 243 (330)
++..+.|+.+++.+....+ .- |+ ...|.+-.-+.++++.+..+-+++.-.-+.+ |. .-|.
T Consensus 45 ~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~gsYk~p-re----~~W~ 119 (215)
T CHL00070 45 LVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKP-RE----LTWV 119 (215)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-cc----cCcH
Confidence 3445678888887654110 00 11 2378888888888888888766654332112 21 2367
Q ss_pred HHHHHHHHHHHHHHHhccccCCCcc
Q 036242 244 VGYAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 244 ~G~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
.|.+++++.++..++|..+.....+
T Consensus 120 ~Gv~l~~l~m~~af~GY~Lpw~q~s 144 (215)
T CHL00070 120 TGVVLAVLTVSFGVTGYSLPWDQIG 144 (215)
T ss_pred HHHHHHHHHHHHHHccccCCcchhh
Confidence 9999999999999999988765543
No 70
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=53.34 E-value=25 Score=24.96 Aligned_cols=69 Identities=16% Similarity=0.109 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 036242 177 SAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFN 255 (330)
Q Consensus 177 ~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~n 255 (330)
.++++.++|+.+...-.. .....--.+|+..++-...|...++. .++..+ .++.+...|...+++|+.-
T Consensus 2 ~Gil~iv~Gi~~l~~p~~-----~~~~~~~i~g~~~i~~Gi~~l~~~~~-~~~~~~----~~~~~l~~gi~~i~~Gi~~ 70 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDA-----SLAALAIILGIWLIISGIFQLISAFR-RRKGSK----GWWWSLLSGILSIVLGIIL 70 (72)
T ss_pred HHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh-ccccch----hhHHHHHHHHHHHHHHHHH
Confidence 355566666655554221 11224567777777777777776655 222222 3345777777777777653
No 71
>PRK03735 cytochrome b6; Provisional
Probab=52.31 E-value=40 Score=30.71 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhhcCCc------------cC-CCc--ccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHH
Q 036242 179 YIIGVAGWATGIDLSSGI------------SS-LNR--DYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWA 243 (330)
Q Consensus 179 ~~l~i~g~~~~~~~~~~~------------~~-~~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~ 243 (330)
++..+.|+.+++.+.... +. -|+ .+.|.+-.-+.++++.++.+-+++.-.-+.+ |. .-|+
T Consensus 53 ~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~gsYk~p-re----~~W~ 127 (223)
T PRK03735 53 VIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKP-RE----LNWV 127 (223)
T ss_pred HHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHcCC-CC----ceeH
Confidence 333466888887755310 00 011 2378888888888888888766554321111 21 1367
Q ss_pred HHHHHHHHHHHHHHHhccccCCCcc
Q 036242 244 VGYAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 244 ~G~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
.|.+++++.+...++|..+.....+
T Consensus 128 ~Gv~l~~l~~~~af~GY~Lpw~q~s 152 (223)
T PRK03735 128 VGVLIFFVTVGLGFTGYLLPWDQKA 152 (223)
T ss_pred HHHHHHHHHHHHHhccccCCcccch
Confidence 9999999999999999888765543
No 72
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=52.08 E-value=73 Score=26.04 Aligned_cols=56 Identities=4% Similarity=0.150 Sum_probs=38.1
Q ss_pred hhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhhe-eeccC
Q 036242 169 YLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFAL-LLRPK 228 (330)
Q Consensus 169 ~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g-~~rp~ 228 (330)
.+|.++..++.++++++++.+|+... .. -.-.|-.++..+++..+.-.++- |.|-+
T Consensus 29 iinliiG~vT~l~VLvtii~afvf~~--~~--p~p~~iffavcI~l~~~s~~lLI~WYR~g 85 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFVFPQ--DP--PKPLHIFFAVCILLICISAILLIFWYRQG 85 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEEecC--CC--CCceEEehHHHHHHHHHHHHhheeehhcC
Confidence 67888888888888888888888664 11 12257777777776666665554 45544
No 73
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=50.50 E-value=94 Score=25.19 Aligned_cols=78 Identities=17% Similarity=0.101 Sum_probs=43.1
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhhe---eeccCCCCCCcchhhHHHHHH
Q 036242 168 FYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFAL---LLRPKPDHKYRLYWNIYHWAV 244 (330)
Q Consensus 168 f~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g---~~rp~~~~~~R~~~~~~H~~~ 244 (330)
.+-|.+--+++++|+++.|.+...- .++ .+ .-=++++.++++|.+.- |++=+.++ -.-||..+-++
T Consensus 17 ~k~y~iGFvLsIiLT~ipF~~vm~~-------~~~-~~-~~~~~i~~lA~iQi~vqLvyFlHM~~~~--eg~w~~~~~iF 85 (111)
T COG3125 17 LKSYLIGFVLSIILTLIPFWVVMTG-------ALS-ST-VTLIIILGLAVIQILVHLVYFLHMNTKS--EGRWNMGALIF 85 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-------ccc-hh-hHHHHHHHHHHHHHHHHHHHHhcccCCc--ccceehHHHHH
Confidence 3444555556666666665554431 232 22 23345667888998764 33322222 24578888888
Q ss_pred HHHHHHHHHHHH
Q 036242 245 GYAIIVTSVFNV 256 (330)
Q Consensus 245 G~~~~ilai~ni 256 (330)
+.+++++-++..
T Consensus 86 t~~i~vivvvGS 97 (111)
T COG3125 86 TIFIIVIVVVGS 97 (111)
T ss_pred HHHHHHHHHHHH
Confidence 877766655543
No 74
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=50.08 E-value=1e+02 Score=24.10 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCc--cCC--CcccccchhhHHHHHHHHH
Q 036242 173 ACQVSAYIIGVAGWATGIDLSSGI--SSL--NRDYIHRNIGIALFFLATV 218 (330)
Q Consensus 173 ~~q~~~~~l~i~g~~~~~~~~~~~--~~~--~~~~~H~~iGi~~~~l~~~ 218 (330)
.+-.++.+.++++...++...... +.+ ..-..|..+|+.++.++.+
T Consensus 7 wll~~G~l~~~~A~~~G~~d~~~~~~~~~~~~~~~~H~~~~~~~~~l~~~ 56 (104)
T PF09990_consen 7 WLLVLGLLGAIVAVLTGFVDLLTVERGPPAHRVAWLHAILGLVALGLFLL 56 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666533211 111 1112888888888877766
No 75
>PHA02898 virion envelope protein; Provisional
Probab=48.33 E-value=38 Score=26.21 Aligned_cols=61 Identities=11% Similarity=0.137 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhccccCC--CcchhhHHHHHHHHHHHHHHHHhhe-eeeeeeeechhh
Q 036242 242 WAVGYAIIVTSVFNVLKGLSLLDP--EIQWWHAYIVTAISSGIISAALEAI-TWTIVVKRKKAS 302 (330)
Q Consensus 242 ~~~G~~~~ilai~ni~~Gl~l~~~--~~~~~~~~~~~v~~~~~~~i~lev~-~~~~~~~~~~~~ 302 (330)
...|.+++++|.+-.+.-+....+ +..|..+-+...++-.++.+.+-++ .|.+.|+..+..
T Consensus 15 li~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSii~FIlgivl~lG~~ifs~y~r~C~~~~~~ 78 (92)
T PHA02898 15 VAFGIILLIVACICAYIELSKSEKPADSALRSISIISFILAIILILGIIFFKGYNMFCGGNTTD 78 (92)
T ss_pred HHHHHHHHHHHHHHheehhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Confidence 346766666666655544444332 3446542211111111112222222 466667765544
No 76
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=47.71 E-value=9.2 Score=30.80 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhheeeeeeeeechhhh
Q 036242 274 IVTAISSGIISAALEAITWTIVVKRKKASE 303 (330)
Q Consensus 274 ~~~v~~~~~~~i~lev~~~~~~~~~~~~~~ 303 (330)
.+++++++++.+++.+..|+...||+|...
T Consensus 4 l~il~llLll~l~asl~~wr~~~rq~k~~~ 33 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLAWRMKQRQKKAGQ 33 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 345556666777888888987666665433
No 77
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=47.49 E-value=3.6e+02 Score=28.27 Aligned_cols=57 Identities=16% Similarity=0.056 Sum_probs=37.2
Q ss_pred hhhhhhhhhH------hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhc
Q 036242 135 RKRNFHQFLS------ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLS 193 (330)
Q Consensus 135 ~~~~~Hg~lM------il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~ 193 (330)
.....|.-++ +.+|.+.-++-..+.- .+..|-..=+-...+++++..+|+++|-...
T Consensus 115 ~~l~iH~p~~~lgya~~~v~f~~a~~~L~~~~--~~~~~~~~~~~~~~~g~~flt~Gi~~G~~WA 177 (576)
T TIGR00353 115 PGLIFHPPLLYMGYVGFSVAFAFALASLLRGE--LDSACARICRPWTLAAWSFLTLGIVLGSWWA 177 (576)
T ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568898777 4455544443322321 1345777767778899999999999987644
No 78
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=46.28 E-value=72 Score=28.50 Aligned_cols=85 Identities=15% Similarity=0.261 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhhcCCcc------------C-CCc--ccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHH
Q 036242 179 YIIGVAGWATGIDLSSGIS------------S-LNR--DYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWA 243 (330)
Q Consensus 179 ~~l~i~g~~~~~~~~~~~~------------~-~~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~ 243 (330)
.+..+.|+.+++....... . -|+ ...|.+---..++++.+..+-+++...-+ +.| ..-|+
T Consensus 34 ~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~gsY~-~pr----e~~W~ 108 (200)
T cd00284 34 VIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYK-KPR----ELTWV 108 (200)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chh----HHHHH
Confidence 4445678888887654210 0 011 12777776777777777776665543211 112 23578
Q ss_pred HHHHHHHHHHHHHHHhccccCCCcc
Q 036242 244 VGYAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 244 ~G~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
.|.+++++.++..++|..+.....+
T Consensus 109 ~G~~l~~l~~~~af~GY~Lpw~q~s 133 (200)
T cd00284 109 IGVILLLLTMATAFMGYVLPWGQMS 133 (200)
T ss_pred HHHHHHHHHHHHHHcccccCchhhh
Confidence 9999999999999999988765543
No 79
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=45.02 E-value=1.6e+02 Score=23.70 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=35.6
Q ss_pred hHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhhe---eeccCCCCCCcchhhHHHHHHHHH
Q 036242 171 HVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFAL---LLRPKPDHKYRLYWNIYHWAVGYA 247 (330)
Q Consensus 171 H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g---~~rp~~~~~~R~~~~~~H~~~G~~ 247 (330)
|..--+++++++++.|.+..... + .-...=.++++++++|.+.- |++=. .+.+..||..--.++..
T Consensus 18 yviGFiLSliLT~i~F~lv~~~~-------~--~~~~~~~~i~~lA~vQi~VqL~~FLHl~--~~~~~~wn~~al~Ft~~ 86 (109)
T PRK10582 18 YMTGFILSIILTVIPFWMVMTGA-------A--SPAVILGTILAMAVVQILVHLVCFLHMN--TKSDEGWNMTAFVFTVL 86 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc-------C--ChhHHHHHHHHHHHHHHHHHHHHHhccc--CCcccchHHHHHHHHHH
Confidence 44445566677777666654411 1 11222334556677888763 33333 23345677777666655
No 80
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=43.49 E-value=43 Score=26.49 Aligned_cols=26 Identities=12% Similarity=-0.114 Sum_probs=18.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHhheee
Q 036242 267 IQWWHAYIVTAISSGIISAALEAITW 292 (330)
Q Consensus 267 ~~~~~~~~~~v~~~~~~~i~lev~~~ 292 (330)
+.+-|+.+.++.++++.++++|.+++
T Consensus 50 RN~GIli~f~i~f~~~~~~~~e~~~~ 75 (103)
T PF06422_consen 50 RNFGILIAFWIFFIVLTLLATEFIKF 75 (103)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44556666666777777888888876
No 81
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=43.44 E-value=1.2e+02 Score=26.66 Aligned_cols=55 Identities=13% Similarity=-0.014 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhheeeccCC--CCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccC
Q 036242 210 IALFFLATVQVFALLLRPKP--DHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLD 264 (330)
Q Consensus 210 i~~~~l~~~Q~l~g~~rp~~--~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~ 264 (330)
..+.++++.|...|+++... ....|.....+|+.+|..+++|.+.=++..+....
T Consensus 17 Wl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~ 73 (181)
T COG3038 17 WLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRNPA 73 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44555666666666655432 22245566778999999999999999998887654
No 82
>COG4329 Predicted membrane protein [Function unknown]
Probab=42.45 E-value=49 Score=27.70 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCccCCCccc-ccchhhHHHHHHHHHHHhhee
Q 036242 174 CQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFFLATVQVFALL 224 (330)
Q Consensus 174 ~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~ 224 (330)
++...+++++.|+++-+.... .+.+.. .|-+-|-.++....+|..-|.
T Consensus 64 FHa~~wv~tv~Gl~~lwr~gr---r~~~~wSa~~~~G~ll~GaGlFnl~eGt 112 (160)
T COG4329 64 FHAFSWVATVGGLFMLWRLGR---RKTFQWSAKYWWGGLLLGAGLFNLYEGT 112 (160)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCcceeehhhhhhhhhhcccchheeehh
Confidence 445666677777665555443 222322 666666666666666665443
No 83
>MTH00086 CYTB cytochrome b; Provisional
Probab=42.01 E-value=90 Score=30.54 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=51.4
Q ss_pred HHHHHHHHhhhcCCcc------------C-CCc--ccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHH
Q 036242 182 GVAGWATGIDLSSGIS------------S-LNR--DYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGY 246 (330)
Q Consensus 182 ~i~g~~~~~~~~~~~~------------~-~~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~ 246 (330)
.+.|+.+++.+....+ . -|+ .+.|.+-.-..++++.+...-+++.-. +|+.. =|+.|.
T Consensus 34 iiTGi~L~~~Y~p~~~~Af~Sv~~I~~~v~~GwliR~~H~~gas~~f~~~ylHi~R~~~ygs----y~~~~---~W~~Gv 106 (355)
T MTH00086 34 ILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMS----YRLKK---VWISGL 106 (355)
T ss_pred HHHHHHHHhhhcCCchhHHHHHHHHhCcccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHcc----cCCch---HHHHhH
Confidence 4668888887654210 0 011 227877777777777776665554322 11111 268999
Q ss_pred HHHHHHHHHHHHhccccCCCcc
Q 036242 247 AIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 247 ~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
+++++.+++.++|..+.....+
T Consensus 107 ~l~~l~m~~af~GYvLpw~qms 128 (355)
T MTH00086 107 TIYLLVMMEAFMGYVLVWAQMS 128 (355)
T ss_pred HHHHHHHHHHHhhhhcccCchh
Confidence 9999999999999998765543
No 84
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=40.47 E-value=53 Score=25.07 Aligned_cols=13 Identities=23% Similarity=0.458 Sum_probs=7.2
Q ss_pred ccccCCCcCCCCc
Q 036242 308 QRTNGVNEANGHA 320 (330)
Q Consensus 308 ~~~~~~~~~~~~~ 320 (330)
....|.||++|-+
T Consensus 49 raEDSGnES~Gd~ 61 (81)
T PF00558_consen 49 RAEDSGNESDGDE 61 (81)
T ss_dssp TTTCCHCTTTTCC
T ss_pred ccccCCCCCCCcH
Confidence 3344446777754
No 85
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=39.87 E-value=1.9e+02 Score=22.81 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=37.4
Q ss_pred hHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhhe---eeccCCCCCCcchhhHHHHHHHHH
Q 036242 171 HVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFAL---LLRPKPDHKYRLYWNIYHWAVGYA 247 (330)
Q Consensus 171 H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g---~~rp~~~~~~R~~~~~~H~~~G~~ 247 (330)
|..--+++++++++.|.+..... + .....-.++++++++|.+.- |++=+ .+..+.||..--.++.+
T Consensus 7 yviGFiLsliLT~i~F~~v~~~~-------~--~~~~~~~~i~~~A~iQi~vqL~~FlHl~--~~~~~~~n~~~l~Ft~~ 75 (96)
T TIGR02847 7 YLIGFVLSVILTAIPFGLVMSGT-------L--SKGLTLVIIIVLAVVQILVHLVFFLHLN--TSSEQRWNLISLLFTIL 75 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc-------C--CHhHHHHHHHHHHHHHHHHHHHHHhhcc--CccccchHHHHHHHHHH
Confidence 44455667777777776665421 1 12333345556788998864 33333 23345677777666554
Q ss_pred H
Q 036242 248 I 248 (330)
Q Consensus 248 ~ 248 (330)
+
T Consensus 76 i 76 (96)
T TIGR02847 76 I 76 (96)
T ss_pred H
Confidence 4
No 86
>KOG4671 consensus Brain cell membrane protein 1 (BCMP1) [General function prediction only]
Probab=39.66 E-value=90 Score=27.62 Aligned_cols=63 Identities=21% Similarity=0.080 Sum_probs=47.5
Q ss_pred chhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhheeeccCCC
Q 036242 165 PAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPD 230 (330)
Q Consensus 165 ~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~ 230 (330)
..|+..-+++-..+.++.++.+++++..-. .+.-...-.++|.+++.+.++|....++.|-+.
T Consensus 77 ~~~~~aaAAmL~~g~~i~~I~filgl~~~c---v~~~~~fyRvi~~~l~laaV~qi~sLvIyPVk~ 139 (201)
T KOG4671|consen 77 VDGGRAAAAMLFIGAAILVICFILGLFALC---VPLKLVFYRVIGGLLFLAAVLQIISLVIYPVKY 139 (201)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcceEEeeeHHHHHHHHHHHHHhheeEEeeeee
Confidence 457777777777778888889999988654 112223778899999999999998888888654
No 87
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=39.39 E-value=69 Score=25.59 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=35.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHHHHHHhheeeee
Q 036242 235 LYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIISAALEAITWTI 294 (330)
Q Consensus 235 ~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~~~~~~~~~v~~~~~~~i~lev~~~~~ 294 (330)
+..|..|.+.-+.+++..++.+..+..+...+... .+..+.+.+++....=.+..|.+
T Consensus 25 ~~vn~~h~~~e~~i~i~~ii~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~ra~mEWKy 82 (110)
T PF13789_consen 25 KHVNKLHKKGEWIIFIIFIILIFIFLFIFIFRFFY--PYILIFLFLIILFCFRAFMEWKY 82 (110)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999887666655433211 12233333333333334445665
No 88
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=39.28 E-value=43 Score=26.43 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=17.3
Q ss_pred ccchhhHHHHHHHHHHHhhe--eeccCCCCCCcchhhHHHHH
Q 036242 204 IHRNIGIALFFLATVQVFAL--LLRPKPDHKYRLYWNIYHWA 243 (330)
Q Consensus 204 ~H~~iGi~~~~l~~~Q~l~g--~~rp~~~~~~R~~~~~~H~~ 243 (330)
.-...|++.+.++++-.+.. .+|.+ +.-+.|.+.|+.
T Consensus 78 ~~~~~G~~a~~~l~~l~~tS~~~~R~r---~~ye~f~~~H~~ 116 (125)
T PF01794_consen 78 PYNLTGIIALLLLLILAVTSFPWIRRR---RNYEIFYYLHIL 116 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh---CcHHHHHHHHHH
Confidence 33345666555555544443 22211 112456666665
No 89
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=39.19 E-value=27 Score=28.93 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=31.2
Q ss_pred chhhHHHH--HHHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHHHHHHhheeeee
Q 036242 235 LYWNIYHW--AVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIISAALEAITWTI 294 (330)
Q Consensus 235 ~~~~~~H~--~~G~~~~ilai~ni~~Gl~l~~~~~~~~~~~~~~v~~~~~~~i~lev~~~~~ 294 (330)
.-|.+||. -+|.++++.|++--.+...+....+...+ ++..+....++.+++..+-|+-
T Consensus 44 ~e~s~Yrci~pfG~vili~GvvvT~vays~n~~~si~~~-~G~vlLs~GLmlL~~~alcW~~ 104 (129)
T PF15099_consen 44 AEWSCYRCIMPFGVVILIAGVVVTAVAYSFNSHGSIISI-FGPVLLSLGLMLLACSALCWKP 104 (129)
T ss_pred CCceEEEEEEEehHHHHHHhhHhheeeEeecCCcchhhh-ehHHHHHHHHHHHHhhhheehh
Confidence 34455553 27888999888766655555444443222 2333333334444555455654
No 90
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=39.01 E-value=9.6 Score=37.86 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=68.9
Q ss_pred hhhhhhhhhH----h--hhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCC--c-cCCCccccc
Q 036242 135 RKRNFHQFLS----I--LMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSG--I-SSLNRDYIH 205 (330)
Q Consensus 135 ~~~~~Hg~lM----i--l~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~--~-~~~~~~~~H 205 (330)
....+|..++ + +++.-.+++|=.|.- +.++.|=+.|+..--...++.++-...++..... . ..-++...|
T Consensus 279 ~~~~~h~~~G~~~~~l~~lQ~~~~l~Rp~~~~-k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~~~ 357 (403)
T KOG4293|consen 279 TVYSAHTDLGIILLVLAFLQPLALLLRPLPES-KIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIKLGYGSIL 357 (403)
T ss_pred eeeeecccchhHHHHHHHHHHHHHHhcCCccc-CceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEEeeeeeEE
Confidence 4557777776 2 233333444422221 2567788888777555555555554444443320 0 001333499
Q ss_pred chhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHH
Q 036242 206 RNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAV 244 (330)
Q Consensus 206 ~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~ 244 (330)
..+|++..++..+|+....-|+.+...+|...++.|+-.
T Consensus 358 ~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (403)
T KOG4293|consen 358 AVLGLIAVILEILSWRITIERPSPSSMSRTSTNAPSRGQ 396 (403)
T ss_pred EEechhhhhhhhheeeeeecccCcccccccccCcccccc
Confidence 999999999999999999999998888887777777643
No 91
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=38.42 E-value=3.2e+02 Score=28.93 Aligned_cols=57 Identities=12% Similarity=0.028 Sum_probs=37.8
Q ss_pred hhhhhhhhhH------hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhc
Q 036242 135 RKRNFHQFLS------ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLS 193 (330)
Q Consensus 135 ~~~~~Hg~lM------il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~ 193 (330)
.....|..++ +.+|.+..++-.++.- .+..|-.+=+-+..+++++..+|+++|-...
T Consensus 167 ~~l~iHpp~l~lgya~~~v~f~~a~~~L~~~~--~~~~~~~~~~~~~~~g~~~LT~GI~~G~~WA 229 (628)
T TIGR03145 167 IGLIFHPPLLYLGYVGFAVNFAMALAALISGH--LDAAVARWSRPWVLLSWVFLTGGIMLGSWWA 229 (628)
T ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578998887 5566665444333321 1235766666778899999999999986643
No 92
>PRK10263 DNA translocase FtsK; Provisional
Probab=38.03 E-value=1.6e+02 Score=33.95 Aligned_cols=22 Identities=9% Similarity=-0.162 Sum_probs=12.1
Q ss_pred hHhhHHHHHHHHHHHHHHHhhh
Q 036242 171 HVACQVSAYIIGVAGWATGIDL 192 (330)
Q Consensus 171 H~~~q~~~~~l~i~g~~~~~~~ 192 (330)
|+...+++++|.++++.+.+.+
T Consensus 20 rrL~E~~gIlLlllAlfL~lAL 41 (1355)
T PRK10263 20 RRLLEALLILIVLFAVWLMAAL 41 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666665555443
No 93
>COG1971 Predicted membrane protein [Function unknown]
Probab=37.37 E-value=3e+02 Score=24.50 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhheeeccC
Q 036242 176 VSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPK 228 (330)
Q Consensus 176 ~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~ 228 (330)
++-++..++|...+..... .....-+|+|.+++....++.+--.++|.
T Consensus 45 ~f~~i~pliG~~~g~~~s~-----~i~~~~~wigf~lL~~lG~~mI~e~f~~~ 92 (190)
T COG1971 45 VFQAIMPLIGWFIGKFLST-----FIAEWAHWIGFVLLIILGLKMIIEGFKNE 92 (190)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 3344444555555544331 11124455666666666666555555554
No 94
>CHL00070 petB cytochrome b6
Probab=36.54 E-value=1.5e+02 Score=26.88 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=17.7
Q ss_pred cchhhHHHHHHHHHHHhheeeccC
Q 036242 205 HRNIGIALFFLATVQVFALLLRPK 228 (330)
Q Consensus 205 H~~iGi~~~~l~~~Q~l~g~~rp~ 228 (330)
-=++|++++++.....+.|+.-|-
T Consensus 117 ~W~~Gv~l~~l~m~~af~GY~Lpw 140 (215)
T CHL00070 117 TWVTGVVLAVLTVSFGVTGYSLPW 140 (215)
T ss_pred CcHHHHHHHHHHHHHHHccccCCc
Confidence 456788888777777777777665
No 95
>PLN02631 ferric-chelate reductase
Probab=36.44 E-value=55 Score=34.99 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=44.1
Q ss_pred ccchhhHHHHHHHHHHHhheeec---cCCCCCCcchhh--HHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHHH
Q 036242 204 IHRNIGIALFFLATVQVFALLLR---PKPDHKYRLYWN--IYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTA 277 (330)
Q Consensus 204 ~H~~iGi~~~~l~~~Q~l~g~~r---p~~~~~~R~~~~--~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~~~~~~~~~v 277 (330)
.|+|+|-++++++++-.+.-... ...... +..|+ +.-.+.|.++++++.+-.+..+...... .|..-|..-+
T Consensus 191 yHRWlGri~~~la~iH~i~y~i~~~~~~~~~~-~~~w~~~~~~~~~GviA~v~~~lm~~~Sl~~~RRr-~YE~F~~~Hi 267 (699)
T PLN02631 191 YHIWLGHVSNFLFLVHTVVFLIYWAMINKLME-TFAWNPTYVPNLAGTIAMVIGIAMWVTSLPSFRRK-KFELFFYTHH 267 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh-hhhcccccchHHHHHHHHHHHHHHHHhccHHHHhh-hhhHHHHHHH
Confidence 99999999999999988764322 111111 11111 1123679999988888888887666433 3554443333
No 96
>MTH00131 CYTB cytochrome b; Provisional
Probab=36.40 E-value=1.2e+02 Score=30.02 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=57.4
Q ss_pred hhhhhhHhhHHHHHHH-HHHHHHHHhhhcCCcc------------C-CCc--ccccchhhHHHHHHHHHHHhheeeccCC
Q 036242 166 AWFYLHVACQVSAYII-GVAGWATGIDLSSGIS------------S-LNR--DYIHRNIGIALFFLATVQVFALLLRPKP 229 (330)
Q Consensus 166 ~Wf~~H~~~q~~~~~l-~i~g~~~~~~~~~~~~------------~-~~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~ 229 (330)
.|++.=-.+-.+.+++ .+.|+.+++.+....+ . -|+ .+.|.+=--+.++++.+..+-+++...-
T Consensus 28 ~~~~~~G~ll~~~~~~qiitG~~L~~~Y~p~~~~a~~Sv~~i~~ev~~G~~iR~~H~~gas~~~~~~~lH~~r~~~~gsy 107 (380)
T MTH00131 28 SVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSY 107 (380)
T ss_pred cceeeHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3544333333334333 5778888888654210 0 011 2278776666667776666655543221
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcc
Q 036242 230 DHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 230 ~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
. +.| =|+.|.+++++.+...++|..+.....+
T Consensus 108 ~-~~~------~W~~G~~l~~l~~~~~f~Gy~Lpw~q~s 139 (380)
T MTH00131 108 L-YKE------TWNIGVVLLLLVMMTAFVGYVLPWGQMS 139 (380)
T ss_pred h-Cch------HHHHhHHHHHHHHHHHHHhccCccccch
Confidence 1 111 2689999999999999999998765543
No 97
>MTH00145 CYTB cytochrome b; Provisional
Probab=36.10 E-value=1.4e+02 Score=29.35 Aligned_cols=81 Identities=15% Similarity=0.200 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhcCCcc----C-----C----Cc--ccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHH
Q 036242 181 IGVAGWATGIDLSSGIS----S-----L----NR--DYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVG 245 (330)
Q Consensus 181 l~i~g~~~~~~~~~~~~----~-----~----~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G 245 (330)
-.+.|+.+++.+....+ | + |+ .+.|.+-.-..++++.+...-+++.-. +|+.. =|+.|
T Consensus 45 qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gs----y~~~~---~W~~G 117 (379)
T MTH00145 45 QILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGS----YLMQH---TWNIG 117 (379)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----ccCch---HHHHh
Confidence 35678888887654210 0 0 11 127777555666666666655544322 11111 37899
Q ss_pred HHHHHHHHHHHHHhccccCCCcc
Q 036242 246 YAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 246 ~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
.+++++.+++.++|..+.....+
T Consensus 118 v~l~~l~~~~af~GYvLpw~q~s 140 (379)
T MTH00145 118 VTLLLLSMGTAFLGYVLPWGQMS 140 (379)
T ss_pred HHHHHHHHHHHHHhhccCccccc
Confidence 99999999999999998765544
No 98
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=36.00 E-value=2.3e+02 Score=27.03 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhe
Q 036242 272 AYIVTAISSGIISAALEAI 290 (330)
Q Consensus 272 ~~~~~v~~~~~~~i~lev~ 290 (330)
.|.++=++.+.+++++|++
T Consensus 191 l~~l~p~i~l~~Y~v~q~~ 209 (293)
T PF12271_consen 191 LYYLLPAIFLVIYVVLQLI 209 (293)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666664
No 99
>MTH00016 CYTB cytochrome b; Validated
Probab=35.62 E-value=1.5e+02 Score=29.18 Aligned_cols=95 Identities=12% Similarity=0.101 Sum_probs=56.7
Q ss_pred hhhhhHhhHHHH-HHHHHHHHHHHhhhcCCcc----C-----C----Cc--ccccchhhHHHHHHHHHHHhheeeccCCC
Q 036242 167 WFYLHVACQVSA-YIIGVAGWATGIDLSSGIS----S-----L----NR--DYIHRNIGIALFFLATVQVFALLLRPKPD 230 (330)
Q Consensus 167 Wf~~H~~~q~~~-~~l~i~g~~~~~~~~~~~~----~-----~----~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~ 230 (330)
|++.=-.+-.+. ++..+.|+.+++.+....+ | + |+ .+.|.+-.-+.++++.+..+-+++...-.
T Consensus 30 ~~w~~Gsll~~~~~~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~ 109 (378)
T MTH00016 30 IWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYF 109 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 444333333333 3345778888887654210 0 0 11 12777666666666666666555432211
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcc
Q 036242 231 HKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 231 ~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
+.| -|..|..++++.+++.++|..+.....+
T Consensus 110 -~~~------~W~~Gv~l~~l~m~~af~GYvLpw~q~s 140 (378)
T MTH00016 110 -LME------TWNIGVILLLLTMATAFLGYVLPWGQMS 140 (378)
T ss_pred -cch------HHHhhHHHHHHHHHHHHhhhccchhhhh
Confidence 111 4789999999999999999998765543
No 100
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=35.58 E-value=1.1e+02 Score=27.27 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=23.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 036242 235 LYWNIYHWAVGYAIIVTSVFNVLKGLSLL 263 (330)
Q Consensus 235 ~~~~~~H~~~G~~~~ilai~ni~~Gl~l~ 263 (330)
..+|...+..-.+++++.++.+.+|+.++
T Consensus 105 ~kyN~~qk~~y~~~~~~~~~~~iTGl~l~ 133 (211)
T PRK10639 105 GRYNFGQKCVFWAAIIFLVLLLVSGVIIW 133 (211)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888888888888999999875
No 101
>MTH00033 CYTB cytochrome b; Provisional
Probab=35.35 E-value=1.4e+02 Score=29.53 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=55.1
Q ss_pred hhhhhHhhHHHHH-HHHHHHHHHHhhhcCCccC---------C----Cc--ccccchhhHHHHHHHHHHHhheeeccCCC
Q 036242 167 WFYLHVACQVSAY-IIGVAGWATGIDLSSGISS---------L----NR--DYIHRNIGIALFFLATVQVFALLLRPKPD 230 (330)
Q Consensus 167 Wf~~H~~~q~~~~-~l~i~g~~~~~~~~~~~~~---------~----~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~ 230 (330)
|++.=-.+-.+.+ +-.+.|+.+++.+....+. + |+ .+.|.+=--..++++.+...-+++.-.-
T Consensus 26 ~~w~~Gsll~~~~~~qiiTGi~La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gAs~~f~~~ylHi~R~~~~gsY- 104 (383)
T MTH00033 26 YWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGY- 104 (383)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-
Confidence 4443333333333 3356788888876542100 0 11 1266665555666666666555443221
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcc
Q 036242 231 HKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 231 ~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
+ |+ .=|+.|.+++++.+++.++|..+.....+
T Consensus 105 -~-r~----~~W~~Gv~ll~l~m~~aF~GYvLpw~qms 136 (383)
T MTH00033 105 -S-RV----LTWIVGVLIFFIMMLTAFIGYVLPWGQMS 136 (383)
T ss_pred -c-Ch----HHHHHhHHHHHHHHHHHHhhhcccccchh
Confidence 1 22 23679999999999999999998765543
No 102
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=35.11 E-value=1.1e+02 Score=28.68 Aligned_cols=55 Identities=11% Similarity=-0.005 Sum_probs=38.9
Q ss_pred ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 036242 204 IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPE 266 (330)
Q Consensus 204 ~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~ 266 (330)
.|+.+|.++.++.++-.+.++.+.+.+.+. ++...++.++.+.|..+|......+
T Consensus 70 ~HR~~~~~~gl~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~Q~~lG~~~V~~~ 124 (302)
T PF02628_consen 70 GHRLLAGLVGLLILALAVWAWRKRRIRRRL--------RWLALLALVLVILQGLLGAWTVLSG 124 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcch--------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999998888888777544432211 2466777788888888887655433
No 103
>MTH00034 CYTB cytochrome b; Validated
Probab=34.75 E-value=1.5e+02 Score=29.24 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=56.2
Q ss_pred hhhhhHhhHHHH-HHHHHHHHHHHhhhcCCcc------------C-CCc--ccccchhhHHHHHHHHHHHhheeeccCCC
Q 036242 167 WFYLHVACQVSA-YIIGVAGWATGIDLSSGIS------------S-LNR--DYIHRNIGIALFFLATVQVFALLLRPKPD 230 (330)
Q Consensus 167 Wf~~H~~~q~~~-~~l~i~g~~~~~~~~~~~~------------~-~~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~ 230 (330)
|++.=-.+-.+. ++-.+.|+.+++.+....+ . -|+ ...|.+=.-..++++.+..+-+++...-.
T Consensus 29 ~~~~~G~ll~~~~~~qiiTG~~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gsy~ 108 (379)
T MTH00034 29 IWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYV 108 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 444333333333 3336778989888654210 0 011 23787666666666666665554432211
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcc
Q 036242 231 HKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 231 ~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
|+ . =|+.|.+++++.++..++|..+.....+
T Consensus 109 ---~~-~---~W~~G~~l~~l~~~~af~Gy~Lpw~q~s 139 (379)
T MTH00034 109 ---NI-E---TWNIGVILFLLTMLTAFVGYVLPWGQMS 139 (379)
T ss_pred ---Cc-h---HHHHhHHHHHHHHHHHHhhcCcchhhhh
Confidence 11 1 2679999999999999999999765543
No 104
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=34.70 E-value=2.8e+02 Score=25.12 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccc
Q 036242 238 NIYHWAVGYAIIVTSVFNVLKGLSLL 263 (330)
Q Consensus 238 ~~~H~~~G~~~~ilai~ni~~Gl~l~ 263 (330)
|..-...=..++++..+.+.+|+.++
T Consensus 126 Nplg~~~~~~l~~l~~~~iiTGl~l~ 151 (235)
T PRK10171 126 NPIAQAAMFGYFLMSVFMIITGFALY 151 (235)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44433333346678889999998776
No 105
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=34.25 E-value=70 Score=34.54 Aligned_cols=27 Identities=15% Similarity=0.447 Sum_probs=18.5
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHH
Q 036242 231 HKYRLYWNIYHWAVGYAIIVTSVFNVL 257 (330)
Q Consensus 231 ~~~R~~~~~~H~~~G~~~~ilai~ni~ 257 (330)
..+|+.|+++||.+-.+=..|-++-+|
T Consensus 597 PnWRPRfkyyHW~LSflG~sLC~~iMF 623 (1075)
T KOG2082|consen 597 PNWRPRFKYYHWSLSFLGASLCLAIMF 623 (1075)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHHH
Confidence 468999999999876554444444444
No 106
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=33.98 E-value=61 Score=27.65 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=33.1
Q ss_pred ccchhhHHHHH--HHHHHHhhee--ecc--CCCCCCcchhhHHHHHHHHHHHHHHHH
Q 036242 204 IHRNIGIALFF--LATVQVFALL--LRP--KPDHKYRLYWNIYHWAVGYAIIVTSVF 254 (330)
Q Consensus 204 ~H~~iGi~~~~--l~~~Q~l~g~--~rp--~~~~~~R~~~~~~H~~~G~~~~ilai~ 254 (330)
.=-++|+++.+ +.+.||.+|+ .-. +.+.+.|-..=..|..+|..+++.+.+
T Consensus 93 ~ali~G~~tvl~p~~imqP~lG~G~aas~tP~p~~~r~~sl~aH~vfG~gLyl~~~~ 149 (150)
T PF11158_consen 93 PALIFGLVTVLAPFFIMQPALGAGIAASKTPNPWKARLRSLIAHLVFGLGLYLSALA 149 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhccCCCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33456776654 6679999865 322 223344555567799999999887753
No 107
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=33.35 E-value=3.6e+02 Score=24.16 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=49.5
Q ss_pred CCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHH-----hh--eeeccCCCCCCc-
Q 036242 163 GNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQV-----FA--LLLRPKPDHKYR- 234 (330)
Q Consensus 163 ~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~-----l~--g~~rp~~~~~~R- 234 (330)
.+|.|.++--.+-.++++..+-|+..-|. .+ -+..|+++.++..+-- ++ .+.|+..+...|
T Consensus 91 tdp~lm~lDssLl~lg~~aLlsgitaff~-~n----------A~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~ 159 (226)
T COG4858 91 TDPWLMWLDSSLLFLGAMALLSGITAFFQ-KN----------AQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRP 159 (226)
T ss_pred CCceEEEecccHHHHHHHHHHHHHHHHHh-cC----------CcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCC
Confidence 56888888888877777666666543333 21 3456777665543221 11 124676665555
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc
Q 036242 235 LYWNIYHWAVGYAIIVTSVFNVLKGL 260 (330)
Q Consensus 235 ~~~~~~H~~~G~~~~ilai~ni~~Gl 260 (330)
..|+.+-...+-.++=+++. +..++
T Consensus 160 ~~~K~~lv~~~sm~lWi~v~-i~t~~ 184 (226)
T COG4858 160 GTWKYLLVAVLSMLLWIAVM-IATVF 184 (226)
T ss_pred chHHHHHHHHHHHHHHHHHH-HHHhh
Confidence 47777766666655544443 55554
No 108
>MTH00046 CYTB cytochrome b; Validated
Probab=33.31 E-value=1.1e+02 Score=30.00 Aligned_cols=82 Identities=16% Similarity=0.158 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhhcCCcc----------C---CCc--ccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHH
Q 036242 180 IIGVAGWATGIDLSSGIS----------S---LNR--DYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAV 244 (330)
Q Consensus 180 ~l~i~g~~~~~~~~~~~~----------~---~~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~ 244 (330)
+-.+.|+.+++.+....+ . -|+ ...|.+-.-..++++.++..-+++.-.-. |+ . =|+.
T Consensus 34 iQiiTGi~La~~Y~p~~~~Af~Sv~~I~~~v~~GwliR~~H~~gAs~~f~~~ylHi~R~~~~gsY~---~~-~---~W~~ 106 (355)
T MTH00046 34 IQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYS---KK-G---VWNV 106 (355)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---Cc-h---hHHH
Confidence 335678888887654210 0 011 23788877777788888877665543211 11 1 3689
Q ss_pred HHHHHHHHHHHHHHhccccCCCcc
Q 036242 245 GYAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 245 G~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
|.+++++-+++.++|..+.....+
T Consensus 107 Gv~l~~l~m~~aF~GYvLpwgqms 130 (355)
T MTH00046 107 GFILYLLVMVEAFLGYILPWHQMS 130 (355)
T ss_pred hHHHHHHHHHHHHeeeecCccchh
Confidence 999999999999999998765543
No 109
>MTH00100 CYTB cytochrome b; Provisional
Probab=32.91 E-value=1.6e+02 Score=28.98 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhhcCCcc---------C----CCc--ccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHH
Q 036242 179 YIIGVAGWATGIDLSSGIS---------S----LNR--DYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWA 243 (330)
Q Consensus 179 ~~l~i~g~~~~~~~~~~~~---------~----~~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~ 243 (330)
++-.+.|+.+++.+....+ . -|+ ...|.+---..++++.+..+-+++...-. +.| + |.
T Consensus 42 ~~qiiTG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~~H~~r~~~~gsy~-~~~---~---W~ 114 (379)
T MTH00100 42 ILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYL-FLE---T---WN 114 (379)
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-Cch---H---HH
Confidence 3345778989888664210 0 011 22787666666666666665554432211 112 2 78
Q ss_pred HHHHHHHHHHHHHHHhccccCCCcc
Q 036242 244 VGYAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 244 ~G~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
.|.+++++.+...++|..+.....+
T Consensus 115 ~G~~l~~l~~~~af~Gy~Lpw~q~s 139 (379)
T MTH00100 115 IGIILLFTVMATAFMGYVLPWGQMS 139 (379)
T ss_pred HHHHHHHHHHHHHHHHhccChhhhh
Confidence 9999999999999999999765543
No 110
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=32.81 E-value=4.3e+02 Score=25.80 Aligned_cols=84 Identities=13% Similarity=0.313 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhheeeccCCCC-CCcchhhHHHHHHHH---HHHHHHHHHHHHhccccCCC----cchhh---HHHHHHH
Q 036242 210 IALFFLATVQVFALLLRPKPDH-KYRLYWNIYHWAVGY---AIIVTSVFNVLKGLSLLDPE----IQWWH---AYIVTAI 278 (330)
Q Consensus 210 i~~~~l~~~Q~l~g~~rp~~~~-~~R~~~~~~H~~~G~---~~~ilai~ni~~Gl~l~~~~----~~~~~---~~~~~v~ 278 (330)
++++++.+++++.--+|.++++ ++|+.|++.=...|. +++-.+..|+..|+.....+ ..|.. .|..+.+
T Consensus 93 ~~~L~~Li~R~v~fefR~k~~~~~~k~~wd~~~~igs~~~~~~~Gvalg~~~~G~pi~~~~~~~g~~~~~l~~pf~~l~g 172 (346)
T COG1294 93 ILVLFGLIFRGVAFEFRSKIEDPRWKKFWDWAFFIGSFLPPLLLGVALGNLLQGVPIELNGGYAGLSFDQLLNPFALLCG 172 (346)
T ss_pred HHHHHHHHHhhhhhhhcccccChhhHhHHHHHHHhhhHHHHHHHHHHHHHHhcCceeccCCCcccccHHHHhCcHHHHHH
Confidence 4444555566666667775554 556788887766555 44556677899999876222 12322 3455555
Q ss_pred HHHHHHHHHhheeee
Q 036242 279 SSGIISAALEAITWT 293 (330)
Q Consensus 279 ~~~~~~i~lev~~~~ 293 (330)
+..+...++....|.
T Consensus 173 l~~~~~~~l~Ga~~l 187 (346)
T COG1294 173 LGLVLMYVLHGAAWL 187 (346)
T ss_pred HHHHHHHHHHHHHHH
Confidence 544444445444554
No 111
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=32.08 E-value=5.2e+02 Score=27.05 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=35.3
Q ss_pred hhhhhhhhhH------hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhc
Q 036242 135 RKRNFHQFLS------ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLS 193 (330)
Q Consensus 135 ~~~~~Hg~lM------il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~ 193 (330)
.....|..++ +.+|.+..++-.++.- ....|-.+=+-+..+++++..+|+++|-+..
T Consensus 169 ~wl~iHpp~l~lgYa~~~v~fa~a~~~Ll~~~--~~~~~~~~~~~~~~~gw~fLT~GI~lG~~WA 231 (571)
T PRK10369 169 PGLIFHPPLLYLGYGGLMVAASVALASLLRGE--FDAACARICWRWALPGWSALTAGIILGSWWA 231 (571)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578898887 5556655444333211 1234545445566789999999999886543
No 112
>COG4244 Predicted membrane protein [Function unknown]
Probab=30.96 E-value=2.4e+02 Score=24.37 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=21.9
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhccccCC
Q 036242 233 YRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDP 265 (330)
Q Consensus 233 ~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~ 265 (330)
.+..-+|-|.......+++++.|.+......++
T Consensus 82 a~~~a~wh~~lG~il~~~la~~~~~r~~~~~~~ 114 (160)
T COG4244 82 AKQAAEWHHVLGNILLIVLAILTAWRYVHRNDA 114 (160)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345566656666667788999999985444443
No 113
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=30.94 E-value=1.5e+02 Score=23.17 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 036242 243 AVGYAIIVTSVFNVLKGLS 261 (330)
Q Consensus 243 ~~G~~~~ilai~ni~~Gl~ 261 (330)
..|.++++++.+=.+.-+.
T Consensus 16 i~GiiLL~~aCIfAfidfs 34 (92)
T PF05767_consen 16 IGGIILLIAACIFAFIDFS 34 (92)
T ss_pred HHHHHHHHHHHHHHhhhhc
Confidence 4566666655555554433
No 114
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=30.74 E-value=1.7e+02 Score=20.62 Aligned_cols=26 Identities=15% Similarity=0.500 Sum_probs=18.0
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHH
Q 036242 231 HKYRLYWNIYHWAVGYAIIVTSVFNV 256 (330)
Q Consensus 231 ~~~R~~~~~~H~~~G~~~~ilai~ni 256 (330)
+..|..|+.+|.+.|+..+++...=+
T Consensus 35 ~~~~~~~~~iH~~~g~~~~~l~~~Hl 60 (64)
T PF14358_consen 35 GLNKHFWRNIHLWAGYLFLILIILHL 60 (64)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888777766533
No 115
>COG3428 Predicted membrane protein [Function unknown]
Probab=30.15 E-value=15 Score=37.05 Aligned_cols=63 Identities=22% Similarity=0.309 Sum_probs=31.1
Q ss_pred ccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHHHHHHhheeee
Q 036242 226 RPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIISAALEAITWT 293 (330)
Q Consensus 226 rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~~~~~~~~~v~~~~~~~i~lev~~~~ 293 (330)
+|++-+|.-.+++++|-..+.+..+.+....++|....+.. .| .+++...++++.++.+++|.
T Consensus 3 ep~rlhP~ali~~ii~~i~~~iv~~~~~f~~~~gv~t~~~~-~w----~~~~~vv~vi~~i~~ii~w~ 65 (494)
T COG3428 3 EPKRLHPRALIVGIIHAILRAIVVLIGSFSFVLGVATNGYS-FW----GGAALVVLVIFLILQIIKWI 65 (494)
T ss_pred CccccCcHHHHHHHHHHHHHhhhheecceEEEEEEecCCcc-ee----eeehhhHHHHHHHHhhhEEE
Confidence 34444444457788887777665554443334443333322 33 22233333444555566663
No 116
>cd01663 Cyt_c_Oxidase_I Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believ
Probab=29.95 E-value=5.2e+02 Score=26.36 Aligned_cols=56 Identities=9% Similarity=0.043 Sum_probs=32.7
Q ss_pred cchhhhhhhhhH---hhhhhh-H-----HHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHH
Q 036242 133 RQRKRNFHQFLS---ILMPMG-A-----MMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWAT 188 (330)
Q Consensus 133 ~~~~~~~Hg~lM---il~p~g-i-----~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~ 188 (330)
-.+++..||.+| ...|.. . ++.|..+.-.-..|++-.++..+..++.++.++++..
T Consensus 45 y~~~~t~Hg~~mif~~~~p~~~~g~~~~lvP~~~g~~dl~~prln~~s~wl~~~g~~l~~~s~~~ 109 (488)
T cd01663 45 YNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPRLNNLSFWLLPPSLLLLLLSALV 109 (488)
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 457899999999 455543 1 3334432110013444456677777777777776654
No 117
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=29.78 E-value=5.7e+02 Score=25.47 Aligned_cols=57 Identities=16% Similarity=0.026 Sum_probs=33.0
Q ss_pred chhhhhhHhhHHHHHHHHHHHHHHHhhhcCC-----ccCCCccc---ccchhhHHHHHHHHHHHhh
Q 036242 165 PAWFYLHVACQVSAYIIGVAGWATGIDLSSG-----ISSLNRDY---IHRNIGIALFFLATVQVFA 222 (330)
Q Consensus 165 ~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~-----~~~~~~~~---~H~~iGi~~~~l~~~Q~l~ 222 (330)
..|-+.-...|.++ .++++.+.+++...-. ...++.+. .|++.||..++|.++-++.
T Consensus 32 ~~~s~~~~~~qf~g-~iaL~~msl~~~LA~R~~~iE~~~~GlD~~Y~~HK~~sIlailL~l~H~~~ 96 (438)
T COG4097 32 NLLSWRLEFSQFLG-FIALALMSLIFLLATRLPLIEAWFNGLDKIYRFHKYTSILAILLLLAHNFI 96 (438)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHhchHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666655 3333334444433210 01123333 9999999999999988875
No 118
>PF14007 YtpI: YtpI-like protein
Probab=29.61 E-value=1.5e+02 Score=23.10 Aligned_cols=40 Identities=28% Similarity=0.501 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhc
Q 036242 208 IGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGL 260 (330)
Q Consensus 208 iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl 260 (330)
+|+.++.+.+-|.+. .+.. +=...|.+.+++|+.|++.|+
T Consensus 39 lG~fl~~fgiNQ~~~---~~st----------~~~iV~~ifl~lG~~n~~~G~ 78 (89)
T PF14007_consen 39 LGIFLILFGINQMFL---FGST----------VRLIVGAIFLVLGLFNLFAGI 78 (89)
T ss_pred HHHHHHHHHHHHHHH---cccH----------HHHHHHHHHHHHhHHHHHHHH
No 119
>MTH00191 CYTB cytochrome b; Provisional
Probab=29.61 E-value=1.9e+02 Score=28.38 Aligned_cols=97 Identities=15% Similarity=0.148 Sum_probs=57.7
Q ss_pred chhhhhhHhhHHHH-HHHHHHHHHHHhhhcCCcc------------C-CCc--ccccchhhHHHHHHHHHHHhheeeccC
Q 036242 165 PAWFYLHVACQVSA-YIIGVAGWATGIDLSSGIS------------S-LNR--DYIHRNIGIALFFLATVQVFALLLRPK 228 (330)
Q Consensus 165 ~~Wf~~H~~~q~~~-~~l~i~g~~~~~~~~~~~~------------~-~~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~ 228 (330)
..|++.=-.+-.+. .+..+.|+.+++.+....+ . -|+ ...|.+---..++++.+..+-+++...
T Consensus 24 ~~~~~~~G~l~~~~~~~q~itG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~~R~~H~~gas~~~~~~~~H~~r~~~~gs 103 (365)
T MTH00191 24 ISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGS 103 (365)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 33555433433333 3445778888887654210 0 011 127887666666666666655544322
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcc
Q 036242 229 PDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 229 ~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
=. +.| -|+.|.+++++.++..++|..+.....+
T Consensus 104 y~-~~~------~W~~G~~l~~l~~~~~f~Gy~Lpw~q~s 136 (365)
T MTH00191 104 YL-NKE------TWNVGVILLILSMATAFLGYVLPWGQMS 136 (365)
T ss_pred ec-cch------hhHhhHHHHHHHHHHHHhhcccccccch
Confidence 11 112 3789999999999999999999765543
No 120
>PF10953 DUF2754: Protein of unknown function (DUF2754); InterPro: IPR020490 This entry contains membrane proteins with no known function.
Probab=29.24 E-value=85 Score=22.44 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=19.4
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242 230 DHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL 262 (330)
Q Consensus 230 ~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l 262 (330)
..|.|+-|.++-..+|.+-++=|++ ..+|++.
T Consensus 4 ~~kirrdwhyyafa~glifilngvv-gllgfea 35 (70)
T PF10953_consen 4 PVKIRRDWHYYAFAIGLIFILNGVV-GLLGFEA 35 (70)
T ss_pred chHhhhhhHHHHHHHHHHHHhhchh-hhceecc
Confidence 3466777888777788765554443 3445443
No 121
>MTH00074 CYTB cytochrome b; Provisional
Probab=29.10 E-value=1.7e+02 Score=28.81 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhcCCcc-------------CCCc--ccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHH
Q 036242 181 IGVAGWATGIDLSSGIS-------------SLNR--DYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVG 245 (330)
Q Consensus 181 l~i~g~~~~~~~~~~~~-------------~~~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G 245 (330)
-.+.|+.+++.+....+ .-|+ ...|.+=--..++++.+..+=+++.-.-. +.| =|+.|
T Consensus 45 qiitG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~Gw~~R~~H~~gas~~f~~~~lH~~r~~~~gsy~-~~~------~W~~G 117 (380)
T MTH00074 45 QIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYM-YKE------TWNIG 117 (380)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cch------HHHhh
Confidence 35778888887654210 0122 22787766666666666665554432211 111 26799
Q ss_pred HHHHHHHHHHHHHhccccCCCcc
Q 036242 246 YAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 246 ~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
.+++++.+++.++|..+.....+
T Consensus 118 ~~l~~l~~~~af~Gy~Lpw~q~s 140 (380)
T MTH00074 118 VILLFLVMATAFVGYVLPWGQMS 140 (380)
T ss_pred HHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999765543
No 122
>MTH00156 CYTB cytochrome b; Provisional
Probab=28.88 E-value=1.9e+02 Score=28.26 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhhcCCcc----C-----C----Cc--ccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHH
Q 036242 179 YIIGVAGWATGIDLSSGIS----S-----L----NR--DYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWA 243 (330)
Q Consensus 179 ~~l~i~g~~~~~~~~~~~~----~-----~----~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~ 243 (330)
.+..+.|+.+++.+....+ | + |+ ...|.+=--..++++.+..+-+++...-+ |+ . -|+
T Consensus 32 ~~qiiTG~~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~gas~~~~~~~lH~~r~~~~gsy~---~~-~---~W~ 104 (356)
T MTH00156 32 MIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYK---LK-H---TWM 104 (356)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---Cc-c---hhH
Confidence 3345778888888654210 0 0 11 12777655555566666665554432211 11 1 378
Q ss_pred HHHHHHHHHHHHHHHhccccCCCcc
Q 036242 244 VGYAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 244 ~G~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
.|.+++++.++..++|..+.....+
T Consensus 105 ~G~~l~~~~~~~af~GY~Lpw~q~s 129 (356)
T MTH00156 105 SGVIILFLVMATAFLGYVLPWGQMS 129 (356)
T ss_pred hhHHHHHHHHHHHHeeeeccccchh
Confidence 9999999999999999999765543
No 123
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=28.75 E-value=1.1e+02 Score=32.95 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=38.7
Q ss_pred ccchhhHHHHHHHHHHHhheee---ccCCCCCCcchhhH----HHHHHHHHHHHHHHHHHHHhccccCCCcchhh
Q 036242 204 IHRNIGIALFFLATVQVFALLL---RPKPDHKYRLYWNI----YHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWH 271 (330)
Q Consensus 204 ~H~~iGi~~~~l~~~Q~l~g~~---rp~~~~~~R~~~~~----~H~~~G~~~~ilai~ni~~Gl~l~~~~~~~~~ 271 (330)
.|+|+|-++++++++-.+..+. ...... ..++.| .-.+.|.++++++++-.++.+...... .|..
T Consensus 194 fHrWlGr~~~llallH~i~~~i~w~~~~~~~--~~~~~w~~~~~~~~~G~IAlv~l~iL~itSl~~iRR~-~YEl 265 (722)
T PLN02844 194 YHVWLGTSMIFFATVHGASTLFIWGISHHIQ--DEIWKWQKTGRIYLAGEIALVTGLVIWITSLPQIRRK-RFEI 265 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchh--hhhhhhccCcchhhhHHHHHHHHHHHHHHhhHHHHhh-hhHH
Confidence 9999999999999998875321 111000 011111 123678888888887777666555433 3444
No 124
>PRK09546 zntB zinc transporter; Reviewed
Probab=28.74 E-value=91 Score=29.66 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhccccC-CCcchhhHHHHHHHHHHHHHHHH
Q 036242 244 VGYAIIVTSVFNVLKGLSLLD-PEIQWWHAYIVTAISSGIISAAL 287 (330)
Q Consensus 244 ~G~~~~ilai~ni~~Gl~l~~-~~~~~~~~~~~~v~~~~~~~i~l 287 (330)
+..+.+.+.+++.+.|++..+ |...|..+|.+++++.+++.+++
T Consensus 270 lt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~~ 314 (324)
T PRK09546 270 MAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGGV 314 (324)
T ss_pred HHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHHH
Confidence 444555667888889998763 55567767766655555544443
No 125
>MTH00119 CYTB cytochrome b; Provisional
Probab=28.65 E-value=2.1e+02 Score=28.21 Aligned_cols=97 Identities=13% Similarity=0.119 Sum_probs=56.6
Q ss_pred chhhhhhHhhHHHH-HHHHHHHHHHHhhhcCCcc----C---------CCc--ccccchhhHHHHHHHHHHHhheeeccC
Q 036242 165 PAWFYLHVACQVSA-YIIGVAGWATGIDLSSGIS----S---------LNR--DYIHRNIGIALFFLATVQVFALLLRPK 228 (330)
Q Consensus 165 ~~Wf~~H~~~q~~~-~~l~i~g~~~~~~~~~~~~----~---------~~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~ 228 (330)
..|++.=-.+-.++ .+..+.|+.+++.+....+ | -|+ ...|.+---..++++.+..+-+++...
T Consensus 28 ~~~~~~~G~ll~~~~~~qiitG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~ga~~~~~~~~lH~~r~~~~gs 107 (380)
T MTH00119 28 ISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGS 107 (380)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhce
Confidence 33544333333333 3345778888887654210 0 011 127776666666666665554444322
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcc
Q 036242 229 PDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 229 ~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
+|+- .-|+.|..++++.+...++|..+.....+
T Consensus 108 ----y~~~---~~W~~Gv~l~~l~~~~~f~Gy~Lpw~q~s 140 (380)
T MTH00119 108 ----YLYK---ETWNTGVILLLLLMATAFVGYVLPWGQMS 140 (380)
T ss_pred ----eccc---chhhhhhHHHHHHHHHHHHhcccchhhhh
Confidence 1111 14789999999999999999999765533
No 126
>COG3671 Predicted membrane protein [Function unknown]
Probab=27.95 E-value=1.7e+02 Score=24.07 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=34.4
Q ss_pred hhhhhhH-hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhh
Q 036242 138 NFHQFLS-ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGID 191 (330)
Q Consensus 138 ~~Hg~lM-il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~ 191 (330)
..=|++| ++.-+|+++| |.+.. ..+.|..-|--.|+=++.+++.+.++++.
T Consensus 31 y~~G~v~git~lvgvi~A-Yv~rd--~~~~~~~SHy~f~iRTFw~~vl~~iIg~L 82 (125)
T COG3671 31 YLLGAVTGITPLVGVIFA-YVNRD--KADSIAASHYEFLIRTFWLAVLWWIIGLL 82 (125)
T ss_pred HHHHHHHHHHHHHHHHHH-hcccc--cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666 5555577777 55544 45678889999998777777666666655
No 127
>MTH00224 CYTB cytochrome b; Provisional
Probab=27.92 E-value=1.7e+02 Score=28.83 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=57.4
Q ss_pred hhhhhHhhHHHHH-HHHHHHHHHHhhhcCCcc------------C-CCc--ccccchhhHHHHHHHHHHHhheeeccCCC
Q 036242 167 WFYLHVACQVSAY-IIGVAGWATGIDLSSGIS------------S-LNR--DYIHRNIGIALFFLATVQVFALLLRPKPD 230 (330)
Q Consensus 167 Wf~~H~~~q~~~~-~l~i~g~~~~~~~~~~~~------------~-~~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~ 230 (330)
|++.=-.+-.+.+ +-.+.|+.+++.+....+ . -|+ .+.|.+-.-..++++.+..+-+++.-.=.
T Consensus 30 ~~~~~Gsll~~~~~~qiiTGi~L~~~Y~p~~~~Af~Sv~~i~~ev~~Gw~iR~~H~~gas~~f~~~~lH~~R~~~~gsy~ 109 (379)
T MTH00224 30 IWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFN 109 (379)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4443333333333 345778888887654210 0 011 22788877777777777766554432211
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcc
Q 036242 231 HKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 231 ~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
+.| + |+.|.+++++.+...++|..+.....+
T Consensus 110 -~~~---~---W~~Gv~l~~l~~~~af~GY~Lpw~q~s 140 (379)
T MTH00224 110 -LSE---T---WNIGVILFILTMATAFLGYVLPWGQMS 140 (379)
T ss_pred -CHH---H---HHHhHHHHHHHHHHHHeEeeeccccch
Confidence 112 2 679999999999999999999765543
No 128
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.80 E-value=64 Score=23.48 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=19.6
Q ss_pred HHHHhhe-eeeeeeeech---hhhhhhcccccCCCcCCC
Q 036242 284 SAALEAI-TWTIVVKRKK---ASEEKQNQRTNGVNEANG 318 (330)
Q Consensus 284 ~i~lev~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 318 (330)
..++.+| +...+.||+| .++++++..-||+ .+||
T Consensus 31 nyvlY~Yaqk~lpp~kkkpvskkk~k~e~lkqgv-~~pg 68 (69)
T PF04689_consen 31 NYVLYVYAQKTLPPKKKKPVSKKKMKRERLKQGV-SAPG 68 (69)
T ss_pred HHHHHHHHhhcCCCCCCCcccHHHHHHHHHhccC-CCCC
Confidence 3344444 3344444443 6678888888886 3555
No 129
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=27.41 E-value=3.6e+02 Score=22.33 Aligned_cols=75 Identities=12% Similarity=0.114 Sum_probs=33.9
Q ss_pred cchhhHHHHHHHHHHHhheeeccCCCC---CCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHH
Q 036242 205 HRNIGIALFFLATVQVFALLLRPKPDH---KYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAIS 279 (330)
Q Consensus 205 H~~iGi~~~~l~~~Q~l~g~~rp~~~~---~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~~~~~~~~~v~~ 279 (330)
=+.+|...+-++..+.-.-++++.+.. +.+..++..=+.+...++......+.......-+++-.-..|+.|++.
T Consensus 7 ~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vSRRlaNl~Yvlwv~a 84 (136)
T PF06423_consen 7 FSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNSYIEPVSRRLANLPYVLWVLA 84 (136)
T ss_pred hhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHhcchHHHHHHHH
Confidence 356677777777776633344444332 133344444333443333333333333333333333333345555543
No 130
>MTH00022 CYTB cytochrome b; Validated
Probab=26.74 E-value=1.8e+02 Score=28.75 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhhcCCcc---------CC----Cc--ccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHH
Q 036242 181 IGVAGWATGIDLSSGIS---------SL----NR--DYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVG 245 (330)
Q Consensus 181 l~i~g~~~~~~~~~~~~---------~~----~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G 245 (330)
-.+.|+.+++.+....+ .+ |+ .+.|.+=--..++++.+...-+++.-.-. +.| =|+.|
T Consensus 43 qiiTG~~La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lHi~r~~~~gsy~-~~~------~W~~G 115 (379)
T MTH00022 43 QIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYL-KFH------VWNVG 115 (379)
T ss_pred HHHHHHHHHhhhcCChhhHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-Ccc------hhhhc
Confidence 45678888887654210 00 11 23788844444445555555555432211 111 26799
Q ss_pred HHHHHHHHHHHHHhccccCCCcc
Q 036242 246 YAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 246 ~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
.+++++.+++.++|..+.....+
T Consensus 116 v~l~~l~~~~af~GyvLpw~q~s 138 (379)
T MTH00022 116 VVIFLLTMATAFMGYVLPWGQMS 138 (379)
T ss_pred HHHHHHHHHHHHheeeecccccc
Confidence 99999999999999988765543
No 131
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=26.69 E-value=4.5e+02 Score=23.25 Aligned_cols=18 Identities=33% Similarity=0.634 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhccccCC
Q 036242 248 IIVTSVFNVLKGLSLLDP 265 (330)
Q Consensus 248 ~~ilai~ni~~Gl~l~~~ 265 (330)
.++.|+..+..|+-+...
T Consensus 134 ~ii~Gvl~ii~g~ill~~ 151 (185)
T COG3247 134 MIISGVLGIIAGLILLFN 151 (185)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 345556666666655544
No 132
>PRK11281 hypothetical protein; Provisional
Probab=26.03 E-value=1.6e+02 Score=33.46 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=8.4
Q ss_pred ccchhhHHHHHHHH
Q 036242 204 IHRNIGIALFFLAT 217 (330)
Q Consensus 204 ~H~~iGi~~~~l~~ 217 (330)
..-.+|-+++++.+
T Consensus 648 ~~d~lg~~~~i~~~ 661 (1113)
T PRK11281 648 ADDVIGQAVIIIAL 661 (1113)
T ss_pred hhhhHHHHHHHHHH
Confidence 45667766666543
No 133
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=25.67 E-value=53 Score=30.29 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhhee
Q 036242 177 SAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALL 224 (330)
Q Consensus 177 ~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~ 224 (330)
.++-|++++.+++....+ +..+..+...||+.++++|.++-.+-++
T Consensus 196 ~GfGLsLikwilIv~~sd--~f~~y~n~q~wLwwi~~vlG~ll~lr~~ 241 (262)
T KOG4812|consen 196 SGFGLSLIKWILIVRFSD--DFESYFNGQYWLWWIFLVLGLLLFLRGF 241 (262)
T ss_pred hccchhhheeeEEeeccc--ccccccccchHHHHHHHHHHHHHHHHHH
Confidence 455556666655555433 2222222567788777777776666544
No 134
>PHA03048 IMV membrane protein; Provisional
Probab=25.66 E-value=2.1e+02 Score=22.27 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhccccCC-CcchhhHHHHHHHHHHHHHHHHhhe-eeeeeeeech
Q 036242 243 AVGYAIIVTSVFNVLKGLSLLDP-EIQWWHAYIVTAISSGIISAALEAI-TWTIVVKRKK 300 (330)
Q Consensus 243 ~~G~~~~ilai~ni~~Gl~l~~~-~~~~~~~~~~~v~~~~~~~i~lev~-~~~~~~~~~~ 300 (330)
..|.+++++|.+=.+.-+....+ ...|...-+...++-.++.+.+-++ .|.+.|+..|
T Consensus 16 i~GIiLL~~aCIfAfidfsK~k~~~~~wRalsii~FIlgivl~lG~~ifsmy~r~C~~~~ 75 (93)
T PHA03048 16 IGGIILLAASCIFAFVDFSKNKATVTVWRALSGIAFVLGIVMTIGMLIYSMWGRYCTPSK 75 (93)
T ss_pred HHHHHHHHHHHHHhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 45666666665555544443332 2446542211111111222233333 4666677554
No 135
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=25.56 E-value=2.6e+02 Score=28.24 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=45.4
Q ss_pred cchhhHHHHHHHHHHHhhe-----eeccCCCCCCcchhhHHHHHHHHHHHHHHHHHHH----HhccccC-CCcchhhHHH
Q 036242 205 HRNIGIALFFLATVQVFAL-----LLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVL----KGLSLLD-PEIQWWHAYI 274 (330)
Q Consensus 205 H~~iGi~~~~l~~~Q~l~g-----~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~----~Gl~l~~-~~~~~~~~~~ 274 (330)
|.++.++ ++.+...+.| +.++..+. ..++.|...|..-.+..++.+. .|+...+ ...+|.++|.
T Consensus 357 ~~~~a~~--~l~~~~~~~g~~~~Gf~~~~~~~----apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~ 430 (466)
T KOG2532|consen 357 HRLLAVI--LLTIAIGLSGFNISGFYKNHQDI----APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFL 430 (466)
T ss_pred cchHHHH--HHHHHHHHcccchhhhHhhhhhc----cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHH
Confidence 4433333 3334455554 44554441 3467899999877777666544 3333322 3467999887
Q ss_pred HHHHHHHHHHHHHhh
Q 036242 275 VTAISSGIISAALEA 289 (330)
Q Consensus 275 ~~v~~~~~~~i~lev 289 (330)
+..+++++..++.-+
T Consensus 431 i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 431 IAAGILIVGNIIFLF 445 (466)
T ss_pred HHHHHHHHhchheeE
Confidence 777766665544433
No 136
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=25.40 E-value=46 Score=37.26 Aligned_cols=34 Identities=12% Similarity=-0.035 Sum_probs=26.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHhheeeeeeeeech
Q 036242 267 IQWWHAYIVTAISSGIISAALEAITWTIVVKRKK 300 (330)
Q Consensus 267 ~~~~~~~~~~v~~~~~~~i~lev~~~~~~~~~~~ 300 (330)
+-|+|+..++.++++++.+++-.+|+-.++|+|+
T Consensus 977 p~wiIi~svl~GLLlL~llv~~LwK~GFFKR~r~ 1010 (1030)
T KOG3637|consen 977 PLWIIILSVLGGLLLLALLVLLLWKCGFFKRNRK 1010 (1030)
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHhcCccccCCC
Confidence 4577788888888888877777788888888886
No 137
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=25.36 E-value=3.7e+02 Score=21.78 Aligned_cols=46 Identities=11% Similarity=-0.057 Sum_probs=30.3
Q ss_pred hhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhhe
Q 036242 169 YLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFAL 223 (330)
Q Consensus 169 ~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g 223 (330)
+-|.+--+++++++++.|.+..... + .....-.++++++++|.+.-
T Consensus 26 k~yviGFiLSiiLT~I~F~~V~~~~-------l--~~~~~~~~I~~lAvvQi~Vq 71 (110)
T TIGR02908 26 KKQIVTFALMIFLTLIAFFAVMLDE-------I--DKWFVIPFILLLAAVQVAFQ 71 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-------C--ChhHHHHHHHHHHHHHHHHH
Confidence 3455666677777777776665411 2 35556667788999999763
No 138
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=25.31 E-value=6.3e+02 Score=24.45 Aligned_cols=44 Identities=16% Similarity=0.021 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHH
Q 036242 173 ACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLA 216 (330)
Q Consensus 173 ~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~ 216 (330)
..|.+++++.++|+++.........+++....|+++|=++.++.
T Consensus 133 ~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~ 176 (334)
T PF06027_consen 133 WFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLG 176 (334)
T ss_pred HHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHH
Confidence 34678999999998776554221111222237899997766543
No 139
>PRK10209 acid-resistance membrane protein; Provisional
Probab=25.19 E-value=4.6e+02 Score=22.88 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 036242 173 ACQVSAYIIGVAGWATGI 190 (330)
Q Consensus 173 ~~q~~~~~l~i~g~~~~~ 190 (330)
....++..+.+.|+.-.+
T Consensus 49 ~~~~~g~~ll~~Gi~~l~ 66 (190)
T PRK10209 49 LSTVVGILLICSGIALIV 66 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334456666666655333
No 140
>PRK03735 cytochrome b6; Provisional
Probab=25.14 E-value=2.9e+02 Score=25.16 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=16.2
Q ss_pred cchhhHHHHHHHHHHHhheeeccC
Q 036242 205 HRNIGIALFFLATVQVFALLLRPK 228 (330)
Q Consensus 205 H~~iGi~~~~l~~~Q~l~g~~rp~ 228 (330)
-=++|++++++.....+.|+.-|-
T Consensus 125 ~W~~Gv~l~~l~~~~af~GY~Lpw 148 (223)
T PRK03735 125 NWVVGVLIFFVTVGLGFTGYLLPW 148 (223)
T ss_pred eeHHHHHHHHHHHHHHhccccCCc
Confidence 346677777777777777776654
No 141
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.95 E-value=2.3e+02 Score=27.17 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=38.3
Q ss_pred hhhHHHHHHH-HHHHhheee-----ccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccC
Q 036242 207 NIGIALFFLA-TVQVFALLL-----RPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLD 264 (330)
Q Consensus 207 ~iGi~~~~l~-~~Q~l~g~~-----rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~ 264 (330)
.+|++++.|- +.|.+.... -..+..|.+..|+-.-...-..++++|+.+++.|+.-..
T Consensus 217 rlgLvLl~LhYftellfHi~rlfyf~dek~~k~fslwa~vF~l~Rl~tliiaVlt~gfgla~~e 280 (374)
T KOG1608|consen 217 RLGLVLLTLHYFTELLFHIARLFYFSDEKYQKLFSLWAAVFVLGRLGTLIIAVLTVGFGLAGAE 280 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4677776654 345554322 223345667788876666666889999999999986543
No 142
>COG3658 Cytochrome b [Energy production and conversion]
Probab=24.88 E-value=4.7e+02 Score=22.88 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.2
Q ss_pred cccchhhHHHHHHHHHHHhheee
Q 036242 203 YIHRNIGIALFFLATVQVFALLL 225 (330)
Q Consensus 203 ~~H~~iGi~~~~l~~~Q~l~g~~ 225 (330)
.+|.++|++++++..+-..-|++
T Consensus 35 ~~H~wvGyav~allalRL~WG~i 57 (192)
T COG3658 35 QLHTWVGYAVLALLALRLCWGII 57 (192)
T ss_pred ChhHHHHHHHHHHHHHHHHhccc
Confidence 58999999999999998887765
No 143
>TIGR00245 conserved hypothetical protein TIGR00245.
Probab=24.69 E-value=4.8e+02 Score=24.11 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=12.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHhh
Q 036242 267 IQWWHAYIVTAISSGIISAALEA 289 (330)
Q Consensus 267 ~~~~~~~~~~v~~~~~~~i~lev 289 (330)
+.+.+-..+.+..-..-.+.+..
T Consensus 117 p~y~IPl~GMiiGNsM~a~sLa~ 139 (248)
T TIGR00245 117 PIYVIPLMGMVIGNTMNTISLAL 139 (248)
T ss_pred chHHHHHHHHHHhhHHHHHHHHH
Confidence 45667666666655444444444
No 144
>PRK11513 cytochrome b561; Provisional
Probab=24.64 E-value=1.6e+02 Score=25.56 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=22.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 036242 235 LYWNIYHWAVGYAIIVTSVFNVLKGLSLL 263 (330)
Q Consensus 235 ~~~~~~H~~~G~~~~ilai~ni~~Gl~l~ 263 (330)
..+..+|..+|..+++|.++=+...+...
T Consensus 39 ~~~~~~H~s~G~~vl~L~v~Rl~~r~~~~ 67 (176)
T PRK11513 39 PLINMIHVSCGISILVLMVVRLLLRLKYP 67 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34446799999999999988888887643
No 145
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=24.46 E-value=4e+02 Score=28.08 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCCC-cchh
Q 036242 243 AVGYAIIVTSVFNVLKGLSLLDPE-IQWW 270 (330)
Q Consensus 243 ~~G~~~~ilai~ni~~Gl~l~~~~-~~~~ 270 (330)
|.|.++++.|++-..+|+...+.. ..|.
T Consensus 241 ~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~ 269 (599)
T PF06609_consen 241 WIGIFLFIAGLALFLLGLSWGGYPYYPWK 269 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 699999999999999999987653 3453
No 146
>MTH00213 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=24.45 E-value=1.6e+02 Score=26.77 Aligned_cols=50 Identities=6% Similarity=-0.066 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHHHHH
Q 036242 237 WNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIISAA 286 (330)
Q Consensus 237 ~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~~~~~~~~~v~~~~~~~i~ 286 (330)
-|.+|-.+-.+...++++.+++=+...--.-...++|.+-+.++.+..|.
T Consensus 21 kNpVhSaL~LIlvFi~iAgLyilLgAeFLA~iQILVYVGAIaVLFLFVIM 70 (239)
T MTH00213 21 HNFLASVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIM 70 (239)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 47889888888888888877755443322234556887777666554433
No 147
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=24.30 E-value=2.2e+02 Score=26.78 Aligned_cols=51 Identities=10% Similarity=0.321 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc------CCC--cchhhHHHHHHHHHHHHHHHHhheee
Q 036242 239 IYHWAVGYAIIVTSVFNVLKGLSLL------DPE--IQWWHAYIVTAISSGIISAALEAITW 292 (330)
Q Consensus 239 ~~H~~~G~~~~ilai~ni~~Gl~l~------~~~--~~~~~~~~~~v~~~~~~~i~lev~~~ 292 (330)
++=..++.+++++|..|..+-++.. +.+ -+|..++ =....++.+.+|+++-
T Consensus 209 plgI~~slv~v~iAa~sLllDFd~Ie~~v~~gaPk~~eW~~Af---GL~vTLVWLYlEILRL 267 (274)
T PF12811_consen 209 PLGIGFSLVVVGIAALSLLLDFDFIEQGVRQGAPKKMEWYAAF---GLLVTLVWLYLEILRL 267 (274)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCChhhHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4556667777777777777666543 222 2354444 4444667788998753
No 148
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=24.24 E-value=90 Score=29.80 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhccccC-CCcchhhHHHHHHHHHHHHHHHHhh
Q 036242 245 GYAIIVTSVFNVLKGLSLLD-PEIQWWHAYIVTAISSGIISAALEA 289 (330)
Q Consensus 245 G~~~~ilai~ni~~Gl~l~~-~~~~~~~~~~~~v~~~~~~~i~lev 289 (330)
..+.+.+-+++.+.||+... |...|..+|..++++.+++.+++-.
T Consensus 269 s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~~~ 314 (322)
T COG0598 269 STIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLLYL 314 (322)
T ss_pred HHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHHHH
Confidence 33444455666667777765 5566776776666666665555544
No 149
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=23.92 E-value=5.4e+02 Score=26.33 Aligned_cols=70 Identities=17% Similarity=0.032 Sum_probs=40.6
Q ss_pred ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcc-ccCCCcchhhHHHHHHH
Q 036242 204 IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLS-LLDPEIQWWHAYIVTAI 278 (330)
Q Consensus 204 ~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~-l~~~~~~~~~~~~~~v~ 278 (330)
-+-+.|+..-....++|+. +---.+.+.|......|.....+..++|. .+|+. +.+.+..|.+.+..-++
T Consensus 122 GR~i~Gl~~gl~~~~~pmy--l~E~sP~~~RG~~g~~~~~~~~~g~ll~~---~~~l~~ilGt~~~W~~l~~~~~i 192 (485)
T KOG0569|consen 122 GRLIVGLACGLSTGLVPMY--LTEISPKNLRGALGTLLQIGVVIGILLGQ---VLGLPSLLGTEDLWPYLLAFPLI 192 (485)
T ss_pred HHHHHHHHhHHHHHHHHHH--HhhcChhhhccHHHHHHHHHHHHHHHHHH---HHccHHhcCCCcchHHHHHHHHH
Confidence 4556666655555555542 11222346787777777777666666663 34443 45677778876644444
No 150
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=23.67 E-value=3.9e+02 Score=21.53 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhhcCCc--c--CCCcccccchhhHHHHHHHHHHHhheeeccC
Q 036242 177 SAYIIGVAGWATGIDLSSGI--S--SLNRDYIHRNIGIALFFLATVQVFALLLRPK 228 (330)
Q Consensus 177 ~~~~l~i~g~~~~~~~~~~~--~--~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~ 228 (330)
.++++.++|..+.+...+.. . ..+-...=..+++.+.++.+++.+..+.++.
T Consensus 6 ~~~~~~~~~~~~~~~a~~~~~~~~~~~gp~~fP~~l~~~l~~~~~~l~~~~~~~~~ 61 (141)
T PF07331_consen 6 IGLVFLAFGAVFLYQAFQIPSFPSGSPGPGFFPRLLGILLLILSLLLLVRSFRGPD 61 (141)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45556666655555443210 0 0111125566777777788887777777653
No 151
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.49 E-value=51 Score=27.16 Aligned_cols=9 Identities=22% Similarity=-0.082 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 036242 272 AYIVTAISS 280 (330)
Q Consensus 272 ~~~~~v~~~ 280 (330)
+++++++++
T Consensus 70 i~gv~aGvI 78 (122)
T PF01102_consen 70 IFGVMAGVI 78 (122)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 444444443
No 152
>PF06772 LtrA: Bacterial low temperature requirement A protein (LtrA); InterPro: IPR010640 This entry consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes []. It also contains a number of uncharacterised fungal proteins.
Probab=23.38 E-value=6.6e+02 Score=24.01 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcc
Q 036242 236 YWNIYHWAVGYAIIVTSVFNVLKGLS 261 (330)
Q Consensus 236 ~~~~~H~~~G~~~~ilai~ni~~Gl~ 261 (330)
.|.+.|-.+ .+|++-+..|++
T Consensus 251 ~~~y~Hl~l-----~~givl~~~gl~ 271 (354)
T PF06772_consen 251 AWIYLHLPL-----VAGIVLIAVGLE 271 (354)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHH
Confidence 566666544 444444444444
No 153
>MTH00053 CYTB cytochrome b; Provisional
Probab=23.09 E-value=2.6e+02 Score=27.65 Aligned_cols=82 Identities=17% Similarity=0.273 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhhcCCcc-------------CCCc--ccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHH
Q 036242 180 IIGVAGWATGIDLSSGIS-------------SLNR--DYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAV 244 (330)
Q Consensus 180 ~l~i~g~~~~~~~~~~~~-------------~~~~--~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~ 244 (330)
+-.+.|+.+++.+....+ .-|+ .+.|.+---+.++++.+...-+++.-. +|+ ..=|+.
T Consensus 44 ~qiiTGi~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gs----y~~---~~~W~~ 116 (381)
T MTH00053 44 IQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGS----YTK---IIVWNV 116 (381)
T ss_pred HHHHHHHHHHheccCChHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----cCC---chHHHh
Confidence 345678888887654210 0011 127776555556666666655544322 111 123689
Q ss_pred HHHHHHHHHHHHHHhccccCCCcc
Q 036242 245 GYAIIVTSVFNVLKGLSLLDPEIQ 268 (330)
Q Consensus 245 G~~~~ilai~ni~~Gl~l~~~~~~ 268 (330)
|.+++++.+++.++|..+.....+
T Consensus 117 Gv~l~~l~m~~af~GYvLpw~qms 140 (381)
T MTH00053 117 GVLIFLLMILTAFIGYVLPWGQMS 140 (381)
T ss_pred hHHHHHHHHHHHHHHhccchhhhh
Confidence 999999999999999988765533
No 154
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=22.85 E-value=1.5e+02 Score=27.92 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhcccc-CCCcchhhHHHHHHHHHHHHHHHH
Q 036242 246 YAIIVTSVFNVLKGLSLL-DPEIQWWHAYIVTAISSGIISAAL 287 (330)
Q Consensus 246 ~~~~ilai~ni~~Gl~l~-~~~~~~~~~~~~~v~~~~~~~i~l 287 (330)
.+.+.+.+++.+.||+.. -|...|..+|..++++.+++.+++
T Consensus 266 ~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~ 308 (318)
T TIGR00383 266 TIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGP 308 (318)
T ss_pred HHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHH
Confidence 344455566777888865 355567777766666665555443
No 155
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=22.59 E-value=3e+02 Score=21.07 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccc
Q 036242 237 WNIYHWAVGYAIIVTSVFNVLKGLSLL 263 (330)
Q Consensus 237 ~~~~H~~~G~~~~ilai~ni~~Gl~l~ 263 (330)
-+.+=+..|+..+++|++.+..++...
T Consensus 39 ~~~l~r~~g~~~~~~~i~~li~~l~~~ 65 (97)
T PF12650_consen 39 KKKLCRFMGKFMLIIGIILLIGGLLSF 65 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355668899999999999999888433
No 156
>PLN02292 ferric-chelate reductase
Probab=22.24 E-value=71 Score=34.18 Aligned_cols=18 Identities=17% Similarity=0.074 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 036242 237 WNIYHWAVGYAIIVTSVF 254 (330)
Q Consensus 237 ~~~~H~~~G~~~~ilai~ 254 (330)
++.+|+|+||++++++++
T Consensus 205 f~~yHRWlGrii~ll~~l 222 (702)
T PLN02292 205 SIKYHIWLGHLVMTLFTS 222 (702)
T ss_pred HHHHHHHHHHHHHHHHHH
No 157
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=21.67 E-value=3.7e+02 Score=22.08 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=18.4
Q ss_pred CchhhhhhHhhHHH---HHHHHHHHHHHHhh
Q 036242 164 NPAWFYLHVACQVS---AYIIGVAGWATGID 191 (330)
Q Consensus 164 ~~~Wf~~H~~~q~~---~~~l~i~g~~~~~~ 191 (330)
+..|.+.|+.-|.. +.++.+.|++..|.
T Consensus 28 ~g~~M~Ch~tg~a~~~ig~vi~~~~li~~~~ 58 (124)
T PF14387_consen 28 DGGHMKCHWTGQAVTGIGAVIAVLSLIMLFV 58 (124)
T ss_pred CCCeeeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45699999988864 45555555555555
No 158
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=21.58 E-value=4.4e+02 Score=21.32 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=33.1
Q ss_pred ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcc
Q 036242 204 IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLS 261 (330)
Q Consensus 204 ~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~ 261 (330)
-+..+|+++.++..+=|+..++...-+ ....-.+++++|++|+..=+.
T Consensus 26 k~yviGFiLSiiLT~I~F~~V~~~~l~----------~~~~~~~I~~lAvvQi~VqL~ 73 (110)
T TIGR02908 26 KKQIVTFALMIFLTLIAFFAVMLDEID----------KWFVIPFILLLAAVQVAFQLY 73 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC----------hhHHHHHHHHHHHHHHHHHHH
Confidence 567899999998888887766554322 123456778888888875553
No 159
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=21.57 E-value=1.9e+02 Score=32.72 Aligned_cols=46 Identities=22% Similarity=0.076 Sum_probs=22.0
Q ss_pred ccchhhHHHHHHHHHHHhh---eeeccCCC---CCCcchhhHHHHHHHHHHH
Q 036242 204 IHRNIGIALFFLATVQVFA---LLLRPKPD---HKYRLYWNIYHWAVGYAII 249 (330)
Q Consensus 204 ~H~~iGi~~~~l~~~Q~l~---g~~rp~~~---~~~R~~~~~~H~~~G~~~~ 249 (330)
....+|-+++++.++-... -++|++.. .+.....++.|+.+..+++
T Consensus 627 ~~~~lgr~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 678 (1109)
T PRK10929 627 FSGTLGRLCFILLCGALSLVTLSLKRAGIPLYLDKEGSGDNIINHALWNLLI 678 (1109)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHhcccchhcccccchHHHHHHHHHHHHH
Confidence 4557777777665543322 23454432 2222334555555544443
No 160
>PF10002 DUF2243: Predicted membrane protein (DUF2243); InterPro: IPR018719 This entry includes membrane proteins of unknown function.
Probab=21.41 E-value=5.1e+02 Score=21.98 Aligned_cols=81 Identities=14% Similarity=0.046 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhheeeccC--------CCCCCcchhhHHHHHH
Q 036242 173 ACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPK--------PDHKYRLYWNIYHWAV 244 (330)
Q Consensus 173 ~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~--------~~~~~R~~~~~~H~~~ 244 (330)
.+...+++++++|+.+-+.... ..+.--..-...|-+++-....|.+=|.+-++ .+......|+..=-.+
T Consensus 50 LFHa~~~~~~~~Gl~lL~r~~~--r~~~~~~~~~~~g~~l~G~G~Fnl~dG~vdH~lLgiH~Vr~~~~~~l~wDl~wl~~ 127 (143)
T PF10002_consen 50 LFHAFTWVATVAGLFLLWRADR--RRRRPWSGRRLWGGVLLGWGLFNLVDGVVDHKLLGIHHVRYPGPNPLPWDLGWLAF 127 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh--ccccCccchhhHHHHHHHhhHHHHHHHHHHhhhhccceecccCCCccchhHHHHHH
Confidence 4456778888888877664322 11111236778898998889999886654222 1234445677655567
Q ss_pred HHHHHHHHHHH
Q 036242 245 GYAIIVTSVFN 255 (330)
Q Consensus 245 G~~~~ilai~n 255 (330)
|.+.++.|+.-
T Consensus 128 g~lll~~G~~l 138 (143)
T PF10002_consen 128 GALLLLAGWLL 138 (143)
T ss_pred HHHHHHHHHHH
Confidence 77766666543
No 161
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=21.12 E-value=6.8e+02 Score=23.34 Aligned_cols=90 Identities=11% Similarity=-0.083 Sum_probs=51.1
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHH
Q 036242 166 AWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVG 245 (330)
Q Consensus 166 ~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G 245 (330)
.+-+.||.+-.+.-++.++.++..+...+ . ...=.+.....+++..+|.++|.+.-...- ..+..--.|-.++
T Consensus 66 ~~E~~HR~~~~~~gl~~l~~~~~~~~~~~--~----~~~~~~~~~~~~~l~~~Q~~lG~~~V~~~l-~~~~~~~~Hl~~a 138 (302)
T PF02628_consen 66 WIEWGHRLLAGLVGLLILALAVWAWRKRR--I----RRRLRWLALLALVLVILQGLLGAWTVLSGL-VSPYVVTLHLLLA 138 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c----CcchHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHH
Confidence 34577887766666566555555554332 1 112235566666777788777654433220 1244456787777
Q ss_pred HHHHHHHHHHHHHhccc
Q 036242 246 YAIIVTSVFNVLKGLSL 262 (330)
Q Consensus 246 ~~~~ilai~ni~~Gl~l 262 (330)
.+++.+-+.....-...
T Consensus 139 ~~~~~~l~~~~~~~~~~ 155 (302)
T PF02628_consen 139 LLIFALLVWLALRARRP 155 (302)
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 77776666665554443
No 162
>PF06653 Claudin_3: Tight junction protein, Claudin-like; InterPro: IPR009545 This family consists of several Caenorhabditis elegans specific proteins of unknown function.
Probab=20.95 E-value=2.3e+02 Score=24.14 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhheeeccCCCC---CCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcch-----hhHHHHHHHH
Q 036242 208 IGIALFFLATVQVFALLLRPKPDH---KYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQW-----WHAYIVTAIS 279 (330)
Q Consensus 208 iGi~~~~l~~~Q~l~g~~rp~~~~---~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~~-----~~~~~~~v~~ 279 (330)
+-++++++.++|.+.......++. +.|+.+..+=.....+++++.++=+..|.+..+..+.+ ...|..|+++
T Consensus 62 is~~~~~i~i~~~~~~~~~v~~~g~~~~~r~~~~~i~~~s~li~il~~iavil~a~~~~~~~~~~~~~~~~lGyS~wL~v 141 (163)
T PF06653_consen 62 ISFACFIIMIIFYIIIVYKVRKHGYSCSIRKWFHIISIFSLLIVILTIIAVILFAVNISSFNNGYDPFSLSLGYSAWLCV 141 (163)
T ss_pred HHHHHHHHHHHHHHHHheeEecccccHHHHHHHHHHHHHHHHHHHHHHHHheeEEeeccccccccccccceeehHHHHHH
Q ss_pred HHHHHHHHhh
Q 036242 280 SGIISAALEA 289 (330)
Q Consensus 280 ~~~~~i~lev 289 (330)
...+.-....
T Consensus 142 ~sail~~~~~ 151 (163)
T PF06653_consen 142 ASAILSLINF 151 (163)
T ss_pred HHHHHHHHHH
No 163
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=20.74 E-value=1.3e+02 Score=24.08 Aligned_cols=32 Identities=16% Similarity=-0.002 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhheeeeeeeeechhhhhhh
Q 036242 275 VTAISSGIISAALEAITWTIVVKRKKASEEKQ 306 (330)
Q Consensus 275 ~~v~~~~~~~i~lev~~~~~~~~~~~~~~~~~ 306 (330)
++.++++++..++-...++..++++...++++
T Consensus 77 iv~~~~l~la~i~~~~~~~~l~~~~~~~~~t~ 108 (121)
T PF07332_consen 77 IVAGLYLLLALILLLIGRRRLRRAPPPFEETI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 33333333333333333333333333333333
No 164
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=20.44 E-value=73 Score=21.45 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhheeeeeeeeech
Q 036242 274 IVTAISSGIISAALEAITWTIVVKRKK 300 (330)
Q Consensus 274 ~~~v~~~~~~~i~lev~~~~~~~~~~~ 300 (330)
+...+++++++++. .-|.++.|||+
T Consensus 12 ~~~~v~~~~~F~gi--~~w~~~~~~k~ 36 (49)
T PF05545_consen 12 SIGTVLFFVFFIGI--VIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHH--HHHHHcccchh
Confidence 33333344444333 33554444443
No 165
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=20.41 E-value=3.1e+02 Score=25.08 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=26.8
Q ss_pred CCCEEEEEEEEcCCCCcEEEEEEcCCCCCCCCCCeEE----EEEcCCCcEEEEEeecCCCCCC
Q 036242 10 STNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHV----AFRNSTGAIRAYTSPIGSGTPT 68 (330)
Q Consensus 10 ~~~~i~~~~~~~~~~~gWVavGfs~~g~~M~gsd~vI----~~~~~~G~v~v~~~~~~g~~~p 68 (330)
++..+++++.. +||+++=- -.|+.+|. ..+|++|..+++.+..=|...|
T Consensus 74 TgR~LDvaiq~----DGwlaVq~------~dG~EaYTRnG~~qI~a~g~lTiqg~pViG~ggp 126 (251)
T COG4787 74 TGRPLDVAIQG----DGWLAVQD------ADGSEAYTRNGNIQIDATGQLTIQGHPVIGEGGP 126 (251)
T ss_pred cCCcceEEEcc----CceEEEEc------CCCcchheecCceEECcccceecCCCeeecCCCc
Confidence 45667777664 89999944 33444442 1234555555555444444434
No 166
>PRK15006 thiosulfate reductase cytochrome B subunit; Provisional
Probab=20.31 E-value=4.6e+02 Score=24.30 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHhcccc
Q 036242 236 YWNIYHWAVGYAII-VTSVFNVLKGLSLL 263 (330)
Q Consensus 236 ~~~~~H~~~G~~~~-ilai~ni~~Gl~l~ 263 (330)
.+|...+..-.+++ ++..+.+.+|+.+.
T Consensus 175 k~Npgqkl~y~~v~~~~~~~livTGl~l~ 203 (261)
T PRK15006 175 KFNPLQQLAYLGVMYGLVPLLLLTGLLCL 203 (261)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766643 55668899998863
No 167
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=20.28 E-value=1.2e+02 Score=29.94 Aligned_cols=55 Identities=9% Similarity=0.032 Sum_probs=38.2
Q ss_pred ccchhhHHHHHHHHHHHhheeeccCCCCCCc--chhhHHHHHHHHHHHHHHHHHHHH
Q 036242 204 IHRNIGIALFFLATVQVFALLLRPKPDHKYR--LYWNIYHWAVGYAIIVTSVFNVLK 258 (330)
Q Consensus 204 ~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R--~~~~~~H~~~G~~~~ilai~ni~~ 258 (330)
.-+.+|++.++++.+|.+++.-.|-.+...- -.--.+|+|.|..+++|+++-=++
T Consensus 40 ~~qf~g~iaL~~msl~~~LA~R~~~iE~~~~GlD~~Y~~HK~~sIlailL~l~H~~~ 96 (438)
T COG4097 40 FSQFLGFIALALMSLIFLLATRLPLIEAWFNGLDKIYRFHKYTSILAILLLLAHNFI 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6778898888899999888765444332211 112347999999999999875443
No 168
>PF15069 FAM163: FAM163 family
Probab=20.17 E-value=45 Score=28.21 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=10.7
Q ss_pred HHHHHHHHHhheeeeeeeeechhhh
Q 036242 279 SSGIISAALEAITWTIVVKRKKASE 303 (330)
Q Consensus 279 ~~~~~~i~lev~~~~~~~~~~~~~~ 303 (330)
+++++.|..--.-..+.|||.++|+
T Consensus 18 LLcIIaVLCYCRLQYYCCKK~~se~ 42 (143)
T PF15069_consen 18 LLCIIAVLCYCRLQYYCCKKNESEE 42 (143)
T ss_pred HHHHHHHHHHHhhHHHHhhccCCcc
Confidence 3344444444333344455544333
No 169
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=20.17 E-value=4.8e+02 Score=23.07 Aligned_cols=10 Identities=10% Similarity=-0.296 Sum_probs=6.0
Q ss_pred hhhhhhhhhH
Q 036242 135 RKRNFHQFLS 144 (330)
Q Consensus 135 ~~~~~Hg~lM 144 (330)
..+..=|++|
T Consensus 20 ~~~l~~Gv~l 29 (185)
T COG3247 20 WWVLLLGVLL 29 (185)
T ss_pred hHHHHHHHHH
Confidence 4456666666
No 170
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=20.15 E-value=20 Score=33.76 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=7.2
Q ss_pred eeeechhhhhhhc
Q 036242 295 VVKRKKASEEKQN 307 (330)
Q Consensus 295 ~~~~~~~~~~~~~ 307 (330)
.+||+|.|++.|.
T Consensus 239 ~krk~k~~eMEr~ 251 (278)
T PF06697_consen 239 YKRKKKIEEMERR 251 (278)
T ss_pred hhHHHHHHHHHHh
Confidence 3566666665543
Done!