BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036243
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 26/135 (19%)
Query: 5 LSLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIR---RPGSFDFHGAWKYPDRMPSI---- 57
+ LK+++H +L+ +KS +FY N +GF IR RP D+ K D I
Sbjct: 1 MKLKAVHHVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCGDIELEIFGNK 60
Query: 58 ----------GKIINPKD----NHISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQ 103
+I P++ H++F E++ ++L + I + R ++ Y +
Sbjct: 61 LTDSNYCAPPERISWPREACGLRHLAFYVEDVEASRQELIALGIRVEEVRYDD---YTGK 117
Query: 104 --VFFHDPDGSMIEI 116
FF DPDG +E+
Sbjct: 118 KMAFFFDPDGLPLEL 132
>pdb|3GHJ|A Chain A, Crystal Structure From The Mobile Metagenome Of Halifax
Harbour Sewage Outfall: Integron Cassette Protein
Hfx_cass4
Length = 141
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 13/122 (10%)
Query: 4 PLSLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPDRMPSIGKII-- 61
P ++K L ++ +++EKS FY ++GF G D W + G ++
Sbjct: 23 PXNIKGLFEVAVKVKNLEKSSQFYTEILGF----EAGLLDSARRWNFLWVSGRAGXVVLQ 78
Query: 62 ----NPKDNHISFQCENMATVE--RKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIE 115
N + H SF+ E + +E +K E K V V + ++F DP+G +E
Sbjct: 79 EEKENWQQQHFSFRVEK-SEIEPLKKALESKGVSVHGPVNQEWXQAVSLYFADPNGHALE 137
Query: 116 IC 117
Sbjct: 138 FT 139
>pdb|1NPB|A Chain A, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|B Chain B, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|C Chain C, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|D Chain D, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|E Chain E, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|F Chain F, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
Length = 141
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRR--PGSFDFHGAWKYPDRMPSIGKIINPK 64
L+SLNH +L ++KS+ F+ ++G R G++ G + + P+
Sbjct: 2 LQSLNHLTLAVSDLQKSVTFWHELLGLTLHARWNTGAYLTCGDLWVCLSYDEARQYVPPQ 61
Query: 65 DN---HISFQC--ENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEI 116
++ H +F E+ + ++L + + K EG + +F DPDG +E+
Sbjct: 62 ESDYTHYAFTVAEEDFEPLSQRLEQAGVTIWKQNKSEGASF----YFLDPDGHKLEL 114
>pdb|3ZW5|A Chain A, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
pdb|3ZW5|B Chain B, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
Length = 147
Score = 33.5 bits (75), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 7 LKSLNHFSLVCRSVEKSLDFYQNVIG-----FLPIRRPGSFDFHGAWKYPDRMPSIGKII 61
++ L+H + +S++ + FY ++G F R+ F G K+ + +GK
Sbjct: 25 IRRLDHIVMTVKSIKDTTMFYSKILGMEVMTFKEDRKALCF---GDQKF--NLHEVGKEF 79
Query: 62 NPKDNHISFQCENMATVERKLTEMKIEYVKS---RVEEGGIY-------VDQVFFHDPDG 111
PK H ++ + E I+++K+ +EEG + + ++F DPD
Sbjct: 80 EPKAAHPVPGSLDICLITEVPLEEMIQHLKACDVPIEEGPVPRTGAKGPIMSIYFRDPDR 139
Query: 112 SMIEICN 118
++IE+ N
Sbjct: 140 NLIEVSN 146
>pdb|4IR0|A Chain A, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
pdb|4IR0|B Chain B, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
Length = 148
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 11/118 (9%)
Query: 7 LKSLNHFSLVCRSVEKSLDFYQNVIG---FLPIRRPGSFDFHGAWKYPDRMPSIGK-IIN 62
L+ +NH ++EKS++FYQ ++ + R+ FD +G W + I + I
Sbjct: 3 LQGINHICFSVSNLEKSIEFYQKILQAKLLVKGRKLAYFDLNGLWIALNVEEDIPRNEIK 62
Query: 63 PKDNHISFQCENMATVERK--LTEMKIEYVKSRVEEGGIYVDQ--VFFHDPDGSMIEI 116
H +F N A K L + + + R + DQ ++F DPDG E
Sbjct: 63 QSYTHXAFTVTNEALDHLKEVLIQNDVNILPGRERDER---DQRSLYFTDPDGHKFEF 117
>pdb|1LQK|A Chain A, High Resolution Structure Of Fosfomycin Resistance Protein
A (Fosa)
pdb|1LQK|B Chain B, High Resolution Structure Of Fosfomycin Resistance Protein
A (Fosa)
pdb|1LQO|A Chain A, Crystal Strutcure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Thallium Cations
pdb|1LQO|B Chain B, Crystal Strutcure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Thallium Cations
pdb|1LQP|A Chain A, Crystal Structure Of The Fosfomycin Resistance Protein
(Fosa) Containing Bound Substrate
pdb|1LQP|B Chain B, Crystal Structure Of The Fosfomycin Resistance Protein
(Fosa) Containing Bound Substrate
pdb|1NKI|A Chain A, Crystal Strucure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Phosphonoformate
pdb|1NKI|B Chain B, Crystal Strucure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Phosphonoformate
pdb|1NNR|A Chain A, Crystal Structure Of A Probable Fosfomycin Resistance
Protein (Pa1129) From Pseudomonas Aeruginosa With
Sulfate Present In The Active Site
pdb|1NNR|B Chain B, Crystal Structure Of A Probable Fosfomycin Resistance
Protein (Pa1129) From Pseudomonas Aeruginosa With
Sulfate Present In The Active Site
Length = 135
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 14/122 (11%)
Query: 7 LKSLNHFSLVCRSVEKSLDFYQNVIGF-LPIR--RPGSFDFHGAWKYPDRMPSIGKIINP 63
L LNH +L + S+ FY++++GF L R + + W R P G P
Sbjct: 2 LTGLNHLTLAVADLPASIAFYRDLLGFRLEARWDQGAYLELGSLWLCLSREPQYG---GP 58
Query: 64 KDNHISFQ----CENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119
++ + + A +L + K EG D +F DPDG +E
Sbjct: 59 AADYTHYAFGIAAADFARFAAQLRAHGVREWKQNRSEG----DSFYFLDPDGHRLEAHVG 114
Query: 120 DV 121
D+
Sbjct: 115 DL 116
>pdb|3EZ7|A Chain A, Partition Protein Apo Form In Space Group I4122
Length = 398
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 31 IGFLPIRRPGSFDFHGAWKYPDRMPSIGKIIN 62
I F P+ P + DFH + KY R+P + K+I+
Sbjct: 269 ILFTPLP-PATVDFHSSLKYVARLPELVKLIS 299
>pdb|3EZ2|A Chain A, Partition Protein-Adp Complex
pdb|3EZ2|B Chain B, Partition Protein-Adp Complex
pdb|3EZ6|A Chain A, Structure Of Para-Adp Complex:tetragonal Form
pdb|3EZ6|B Chain B, Structure Of Para-Adp Complex:tetragonal Form
Length = 398
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 31 IGFLPIRRPGSFDFHGAWKYPDRMPSIGKIIN 62
I F P+ P + DFH + KY R+P + K+I+
Sbjct: 269 ILFTPLP-PATVDFHSSLKYVARLPELVKLIS 299
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIR---RPGSFDFHGAWK-------------Y 50
K ++H ++ + + + +FY +GF +R RP D K +
Sbjct: 3 FKEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISDQF 62
Query: 51 PDRMPSIGKIINPKDNHISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPD 110
P R PS + + + H++F+ E++ V L E IE RV++ FF DPD
Sbjct: 63 PAR-PSYPEALGLR--HLAFKVEHIEEVIAFLNEQGIETEPLRVDD-FTGKKXTFFFDPD 118
Query: 111 GSMIEI 116
G +E+
Sbjct: 119 GLPLEL 124
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 66 NHISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVLPVV 125
HI ++ + ++ E+ +++VK + G F DPDG IEI N + + +
Sbjct: 126 GHIGIAVPDVYSACKRFEELGVKFVKK--PDDGKMKGLAFIQDPDGYWIEILNPNKIATI 183
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 66 NHISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118
HI ++ + ++ E+ +++VK + G F DPDG IEI N
Sbjct: 125 GHIGIAVPDVYSACKRFEELGVKFVKK--PDDGKMKGLAFIQDPDGYWIEILN 175
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 66 NHISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118
HI ++ + ++ E+ +++VK + G F DPDG IEI N
Sbjct: 129 GHIGIAVPDVYSACKRFEELGVKFVKK--PDDGKMKGLAFIQDPDGYWIEILN 179
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 7 LKSLNHFSLVCRSVEKSLDFYQNVIG 32
L LNH ++ +EK+ FY+N++G
Sbjct: 3 LGRLNHVAIAVPDLEKAAAFYKNILG 28
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 12/120 (10%)
Query: 10 LNHFSLVCRSVEKSLDFYQNVIGFLPI-----RRPGSFDFHGAWKYPDRMPSIGKIINPK 64
++H L + ++ FY+ V+GF + R+ F + M K P
Sbjct: 24 IDHLVLTVSDISTTIRFYEEVLGFSAVTFKQNRKALIFGAQKINLHQQEMEFEPKASRPT 83
Query: 65 DNHISFQCENMAT----VERKLTEMKIEYVKSRVEEGGIY--VDQVFFHDPDGSMIEICN 118
C +T V ++ + I V+ VE G + ++ DPDG++IEI
Sbjct: 84 PGSADL-CFITSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDGNLIEISQ 142
>pdb|2HLS|A Chain A, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aeropyrum Pernix K1
pdb|2HLS|B Chain B, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aeropyrum Pernix K1
Length = 243
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 56 SIGKIINPKDNHISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVD-QVFFHDPDGSMI 114
++ +++NP + H+ T E L MK+ +S GG + V++ + D
Sbjct: 20 TLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKF 79
Query: 115 EICNCDVLPVVPLAGDTIRSCSI 137
+ +P V G +R I
Sbjct: 80 SEFKVERVPTVAFLGGEVRWTGI 102
>pdb|3P8C|E Chain E, Structure And Control Of The Actin Regulatory Wave
Complex
Length = 75
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 39 PGSFDFHGAW---KYPDRMPSIGKIINPKDNHISFQCEN-MATVERKLT--EMKIEYVKS 92
P + H W +Y + + S K I N C + +AT+ KLT E +IEY+++
Sbjct: 7 PVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEA 66
Query: 93 RVEEG 97
RV +G
Sbjct: 67 RVTKG 71
>pdb|1KZQ|A Chain A, Crystal Structure Of A Parasite Protein
pdb|1KZQ|B Chain B, Crystal Structure Of A Parasite Protein
Length = 289
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 51 PDRMPSIGKIINPKDNHISFQCENMATVE 79
PD+ + I+ P +NH + +C A E
Sbjct: 14 PDKKSTAAVILTPTENHFTLKCPKTALTE 42
>pdb|3EY7|A Chain A, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
pdb|3EY7|B Chain B, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
Length = 133
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPG---SFDFHGAWKYPDRMPSIGKIINP 63
+ L+H L + + +FY+ V+G + + +F G K + +G P
Sbjct: 8 ISHLDHLVLTVADIPTTTNFYEKVLGXKAVSFGAGRIALEF-GHQKI--NLHQLGNEFEP 64
Query: 64 KDNHISFQCENMATVERKLTEMKIEYVKSR---VEEGGI-------YVDQVFFHDPDGSM 113
K ++ ++ + + ++V+ + + EG + + +F DPDG++
Sbjct: 65 KAQNVRVGSADLCFITDTVLSDAXKHVEDQGVTIXEGPVKRTGAQGAITSFYFRDPDGNL 124
Query: 114 IEICN 118
IE+
Sbjct: 125 IEVST 129
>pdb|1YNT|F Chain F, Structure Of The Immunodominant Epitope Displayed By The
Surface Antigen 1 (Sag1) Of Toxoplasma Gondii Complexed
To A Monoclonal Antibody
pdb|1YNT|G Chain G, Structure Of The Immunodominant Epitope Displayed By The
Surface Antigen 1 (Sag1) Of Toxoplasma Gondii Complexed
To A Monoclonal Antibody
Length = 254
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 51 PDRMPSIGKIINPKDNHISFQCENMATVE 79
PD+ + I+ P +NH + +C A E
Sbjct: 12 PDKKSTAAVILTPTENHFTLKCPKTALTE 40
>pdb|4HC5|A Chain A, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|B Chain B, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|C Chain C, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|D Chain D, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
Length = 133
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 5 LSLKSLNHFSLVCRSVEKSLDFYQNVIGF 33
L + ++ +++ EK+LDFY N +GF
Sbjct: 9 LXIAYVHSATIIVSDQEKALDFYVNTLGF 37
>pdb|3EY8|A Chain A, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
pdb|3EY8|B Chain B, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
Length = 133
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPG---SFDFHGAWKYPDRMPSIGKIINP 63
+ L+H L + + FY+ V+G + + +F G K + +G P
Sbjct: 8 ISHLDHLVLTVADIPTTTKFYEKVLGXKAVSFGSGRIALEF-GHQKI--NLHQLGHEFEP 64
Query: 64 KDNHISFQCENMATVERKLTEMKIEYVKSR---VEEGGI-------YVDQVFFHDPDGSM 113
K ++ ++ + EYV+++ + EG + + +F DPDG++
Sbjct: 65 KAQNVRTGSADLCFITDIDLSDAXEYVENQGVVIXEGPVKRTGAQGAITSFYFRDPDGNL 124
Query: 114 IEICN 118
IE+
Sbjct: 125 IEVST 129
>pdb|1ZSW|A Chain A, Crystal Structure Of Bacillus Cereus Metallo Protein
From Glyoxalase Family
Length = 338
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIR 37
+K +H S+V ++ ++ FY+NV+G ++
Sbjct: 28 IKGHHHISMVTKNANENNHFYKNVLGLRRVK 58
>pdb|1KAM|A Chain A, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAM|B Chain B, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAM|C Chain C, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAM|D Chain D, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|A Chain A, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|B Chain B, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|C Chain C, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|D Chain D, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|E Chain E, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|F Chain F, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
Length = 194
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 23 SLDFYQNVIGFLPIRRPGSFDFHGAWKYPDRMPSIGKIINPKDNHISFQCENMATVERKL 82
LD N+I F+ ++RPG FH YP + + F+ + ER
Sbjct: 123 KLDELLNLIQFIGVKRPG---FHVETPYPLLFADVPE----------FEVSSTMIRERFK 169
Query: 83 TEMKIEY-----VKSRVEEGGIY 100
++ +Y VK VEE G+Y
Sbjct: 170 SKKPTDYLIPDKVKKYVEENGLY 192
>pdb|2P7Q|A Chain A, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|B Chain B, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|C Chain C, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|D Chain D, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|E Chain E, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|F Chain F, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
Length = 133
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Query: 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPDRMPSIGKIINPKD- 65
+ L+H +L+ + + K+ F QN+ I G F + + + + I D
Sbjct: 2 ISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKEKFFLIAGLWICIMEGDS 61
Query: 66 ------NHISFQC------ENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSM 113
NHI+FQ E ++ EMK E + RV+ G ++F+D D +
Sbjct: 62 LQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPE--RPRVQGEG---RSIYFYDFDNHL 116
Query: 114 IEI 116
E+
Sbjct: 117 FEL 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,647,772
Number of Sequences: 62578
Number of extensions: 186048
Number of successful extensions: 495
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 30
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)