Query 036243
Match_columns 146
No_of_seqs 124 out of 1598
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 10:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07243 2_3_CTD_C C-terminal d 99.9 2.9E-20 6.4E-25 123.8 12.8 117 5-121 2-127 (143)
2 cd08364 FosX FosX, a fosfomyci 99.8 4.4E-20 9.5E-25 121.1 12.1 111 6-120 1-123 (131)
3 PRK11478 putative lyase; Provi 99.8 1.3E-19 2.8E-24 118.0 13.7 113 5-118 2-128 (129)
4 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 1.8E-19 3.8E-24 119.4 13.8 111 7-119 1-141 (142)
5 PRK04101 fosfomycin resistance 99.8 1.2E-19 2.5E-24 120.2 12.7 115 6-121 1-121 (139)
6 PRK06724 hypothetical protein; 99.8 2E-19 4.4E-24 117.6 12.8 112 6-121 4-125 (128)
7 cd08342 HPPD_N_like N-terminal 99.8 5E-19 1.1E-23 116.7 14.0 112 10-122 1-126 (136)
8 cd07257 THT_oxygenase_C The C- 99.8 1.9E-19 4.2E-24 121.1 11.0 123 9-133 1-138 (153)
9 TIGR00068 glyox_I lactoylgluta 99.8 9.6E-19 2.1E-23 117.2 13.5 116 6-121 14-143 (150)
10 cd07253 Glo_EDI_BRP_like_2 Thi 99.8 1.1E-18 2.3E-23 112.4 13.2 113 7-119 1-125 (125)
11 cd08361 PpCmtC_N N-terminal do 99.8 5.3E-19 1.1E-23 114.9 11.7 111 6-120 3-120 (124)
12 cd07265 2_3_CTD_N N-terminal d 99.8 1.4E-18 2.9E-23 112.3 13.5 110 7-119 2-119 (122)
13 cd08351 ChaP_like ChaP, an enz 99.8 9.2E-19 2E-23 113.4 12.4 109 7-120 2-122 (123)
14 cd08363 FosB FosB, a fosfomyci 99.8 5.1E-19 1.1E-23 116.1 11.2 112 10-122 1-118 (131)
15 TIGR03645 glyox_marine lactoyl 99.8 1.3E-18 2.9E-23 118.1 13.2 114 8-121 3-153 (162)
16 PLN02300 lactoylglutathione ly 99.8 1.5E-18 3.3E-23 127.6 14.0 119 5-123 20-152 (286)
17 cd09011 Glo_EDI_BRP_like_23 Th 99.8 2.2E-18 4.7E-23 111.1 13.1 110 9-119 2-119 (120)
18 PLN02367 lactoylglutathione ly 99.8 1.6E-18 3.5E-23 122.5 13.4 114 8-123 74-226 (233)
19 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 2.1E-18 4.4E-23 111.1 12.8 110 8-118 2-125 (125)
20 PLN03042 Lactoylglutathione ly 99.8 2.6E-18 5.5E-23 118.6 13.5 114 8-123 26-178 (185)
21 cd09013 BphC-JF8_N_like N-term 99.8 2.3E-18 4.9E-23 111.2 12.5 110 5-120 2-119 (121)
22 cd07267 THT_Oxygenase_N N-term 99.8 3.8E-18 8.1E-23 109.1 13.1 106 7-119 1-110 (113)
23 cd09014 BphC-JF8_C_like C-term 99.8 1.9E-18 4.2E-23 117.7 12.4 118 4-121 1-129 (166)
24 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 2.2E-18 4.8E-23 111.1 12.0 108 9-117 1-125 (125)
25 cd07247 SgaA_N_like N-terminal 99.8 4.8E-18 1E-22 108.3 13.1 107 10-118 1-114 (114)
26 cd07233 Glyoxalase_I Glyoxalas 99.8 2.6E-18 5.7E-23 110.4 11.7 106 10-117 1-121 (121)
27 cd07256 HPCD_C_class_II C-term 99.8 3.3E-18 7.1E-23 116.0 12.6 120 8-127 2-131 (161)
28 cd07252 BphC1-RGP6_N_like N-te 99.8 2.8E-18 6E-23 110.8 11.7 110 8-120 1-118 (120)
29 cd08360 MhqB_like_C C-terminal 99.8 5.8E-18 1.3E-22 111.4 13.0 111 8-121 2-122 (134)
30 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 3.8E-18 8.1E-23 107.8 11.3 104 10-116 1-114 (114)
31 cd07237 BphC1-RGP6_C_like C-te 99.8 2.8E-18 6E-23 115.6 11.1 114 8-121 8-133 (154)
32 cd08362 BphC5-RrK37_N_like N-t 99.8 6.7E-18 1.5E-22 108.5 12.4 110 7-120 1-118 (120)
33 cd07266 HPCD_N_class_II N-term 99.8 4.2E-18 9.1E-23 109.8 11.2 109 6-119 1-118 (121)
34 cd07264 Glo_EDI_BRP_like_15 Th 99.8 1E-17 2.2E-22 108.3 12.7 109 10-119 1-125 (125)
35 cd08345 Fosfomycin_RP Fosfomyc 99.8 3.9E-18 8.5E-23 108.5 10.6 106 12-119 1-111 (113)
36 cd07255 Glo_EDI_BRP_like_12 Th 99.8 2.2E-17 4.7E-22 106.8 13.7 112 8-122 1-122 (125)
37 PRK10291 glyoxalase I; Provisi 99.8 1E-17 2.2E-22 109.3 12.2 107 14-120 1-121 (129)
38 cd07244 FosA FosA, a Fosfomyci 99.8 5.4E-18 1.2E-22 109.5 10.8 106 9-120 1-111 (121)
39 cd08347 PcpA_C_like C-terminal 99.8 1E-17 2.2E-22 113.2 12.2 111 9-122 1-123 (157)
40 cd07239 BphC5-RK37_C_like C-te 99.8 1.2E-17 2.5E-22 111.4 12.2 111 8-121 3-119 (144)
41 cd07240 ED_TypeI_classII_N N-t 99.8 1.4E-17 3.1E-22 106.3 12.1 107 8-119 1-114 (117)
42 TIGR03211 catechol_2_3 catecho 99.8 2.6E-17 5.7E-22 121.7 13.9 115 4-118 140-264 (303)
43 cd07242 Glo_EDI_BRP_like_6 Thi 99.8 4.8E-17 1E-21 105.7 13.5 111 9-119 1-128 (128)
44 TIGR03081 metmalonyl_epim meth 99.8 5.3E-18 1.2E-22 110.0 8.5 109 9-118 1-128 (128)
45 cd08357 Glo_EDI_BRP_like_18 Th 99.8 4.8E-17 1E-21 105.0 12.7 108 12-119 2-125 (125)
46 cd08346 PcpA_N_like N-terminal 99.8 2.4E-17 5.1E-22 106.4 11.1 106 9-117 1-126 (126)
47 cd07263 Glo_EDI_BRP_like_16 Th 99.7 4.7E-17 1E-21 103.8 12.2 105 12-118 1-119 (119)
48 cd07258 PpCmtC_C C-terminal do 99.7 2.7E-17 5.9E-22 109.2 11.4 110 11-123 1-118 (141)
49 cd08359 Glo_EDI_BRP_like_22 Th 99.7 4.3E-17 9.3E-22 104.6 11.7 106 12-118 4-119 (119)
50 cd08343 ED_TypeI_classII_C C-t 99.7 5.2E-17 1.1E-21 106.3 12.1 111 11-121 1-119 (131)
51 cd08344 MhqB_like_N N-terminal 99.7 6.1E-17 1.3E-21 103.2 11.5 103 8-120 1-110 (112)
52 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 1.6E-16 3.5E-21 101.0 12.3 103 12-119 3-111 (112)
53 PF12681 Glyoxalase_2: Glyoxal 99.7 4.6E-17 1E-21 102.7 9.6 99 15-117 1-108 (108)
54 PF00903 Glyoxalase: Glyoxalas 99.7 7E-18 1.5E-22 108.8 6.0 108 9-116 1-128 (128)
55 cd07235 MRD Mitomycin C resist 99.7 1E-16 2.2E-21 103.4 11.3 106 10-117 1-121 (122)
56 TIGR02295 HpaD 3,4-dihydroxyph 99.7 1.8E-16 3.8E-21 116.8 13.8 123 4-126 131-263 (294)
57 cd08348 BphC2-C3-RGP6_C_like T 99.7 1.8E-16 4E-21 103.8 12.2 108 9-121 1-122 (134)
58 cd07262 Glo_EDI_BRP_like_19 Th 99.7 1.7E-16 3.6E-21 102.5 11.7 106 10-117 1-122 (123)
59 cd08355 Glo_EDI_BRP_like_14 Th 99.7 4.4E-16 9.4E-21 100.5 13.0 106 13-119 3-122 (122)
60 cd08354 Glo_EDI_BRP_like_13 Th 99.7 3.4E-16 7.4E-21 100.6 12.0 108 10-119 1-122 (122)
61 cd09012 Glo_EDI_BRP_like_24 Th 99.7 4.4E-16 9.6E-21 100.8 12.4 105 11-118 2-123 (124)
62 TIGR03213 23dbph12diox 2,3-dih 99.7 2.5E-16 5.5E-21 115.7 12.6 113 7-120 140-264 (286)
63 cd07254 Glo_EDI_BRP_like_20 Th 99.7 4.4E-16 9.6E-21 100.2 12.2 106 11-119 3-117 (120)
64 cd07261 Glo_EDI_BRP_like_11 Th 99.7 6.3E-16 1.4E-20 98.5 11.9 104 13-118 2-114 (114)
65 cd08356 Glo_EDI_BRP_like_17 Th 99.7 3.2E-16 6.9E-21 100.2 10.3 101 13-118 5-113 (113)
66 cd08349 BLMA_like Bleomycin bi 99.7 5.6E-16 1.2E-20 98.1 11.1 104 14-118 3-112 (112)
67 cd07249 MMCE Methylmalonyl-CoA 99.7 3.4E-16 7.4E-21 101.3 10.2 108 10-118 1-128 (128)
68 cd08350 BLMT_like BLMT, a bleo 99.7 7.5E-16 1.6E-20 99.3 11.4 104 12-119 5-119 (120)
69 cd08358 Glo_EDI_BRP_like_21 Th 99.7 1.4E-15 3E-20 99.1 12.4 101 9-118 2-126 (127)
70 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 2E-15 4.3E-20 96.9 12.8 105 13-118 5-121 (122)
71 TIGR02295 HpaD 3,4-dihydroxyph 99.7 1.2E-15 2.7E-20 112.3 13.0 109 6-121 1-117 (294)
72 TIGR03211 catechol_2_3 catecho 99.7 1.4E-15 3E-20 112.6 12.4 110 7-121 2-120 (303)
73 TIGR03213 23dbph12diox 2,3-dih 99.6 3.2E-15 7E-20 109.8 11.8 111 7-120 1-119 (286)
74 cd07251 Glo_EDI_BRP_like_10 Th 99.6 4.3E-15 9.4E-20 95.2 11.0 105 13-118 2-120 (121)
75 COG3324 Predicted enzyme relat 99.6 2.4E-14 5.3E-19 92.3 13.4 114 5-119 5-125 (127)
76 cd06587 Glo_EDI_BRP_like This 99.6 7.3E-15 1.6E-19 91.8 10.3 104 12-116 1-112 (112)
77 PLN02300 lactoylglutathione ly 99.6 1.4E-14 3.1E-19 106.6 13.1 116 6-121 151-280 (286)
78 KOG2944 Glyoxalase [Carbohydra 99.5 2.1E-13 4.5E-18 89.7 10.9 115 4-120 17-169 (170)
79 COG3607 Predicted lactoylgluta 99.5 2.7E-13 5.9E-18 85.8 9.0 110 9-121 3-129 (133)
80 COG3565 Predicted dioxygenase 99.5 8.5E-13 1.8E-17 82.5 9.3 115 9-123 4-133 (138)
81 COG2514 Predicted ring-cleavag 99.4 5.8E-12 1.3E-16 89.9 11.3 113 7-122 8-129 (265)
82 PF13669 Glyoxalase_4: Glyoxal 99.4 1.2E-12 2.7E-17 83.0 5.8 83 11-93 1-97 (109)
83 cd07250 HPPD_C_like C-terminal 99.3 1.2E-11 2.7E-16 86.0 9.5 115 8-122 2-159 (191)
84 TIGR01263 4HPPD 4-hydroxypheny 99.3 4.6E-11 9.9E-16 90.4 10.2 120 3-122 152-313 (353)
85 COG0346 GloA Lactoylglutathion 99.2 3.2E-11 6.9E-16 77.3 6.9 108 8-118 1-138 (138)
86 cd06588 PhnB_like Escherichia 99.2 2.6E-10 5.6E-15 74.3 10.5 102 13-117 3-128 (128)
87 PRK01037 trmD tRNA (guanine-N( 99.2 1.4E-10 3E-15 86.0 8.2 104 8-119 246-354 (357)
88 TIGR01263 4HPPD 4-hydroxypheny 99.1 3.4E-09 7.4E-14 80.3 11.3 111 9-119 2-127 (353)
89 PLN02875 4-hydroxyphenylpyruva 99.0 5.6E-09 1.2E-13 79.7 11.5 118 6-123 177-344 (398)
90 KOG2943 Predicted glyoxalase [ 99.0 4.3E-09 9.4E-14 74.0 9.4 103 7-118 15-142 (299)
91 COG2764 PhnB Uncharacterized p 99.0 3.7E-08 8E-13 64.6 12.2 108 13-121 4-133 (136)
92 KOG2943 Predicted glyoxalase [ 98.8 3.4E-08 7.3E-13 69.6 9.0 114 8-122 148-273 (299)
93 PF14506 CppA_N: CppA N-termin 98.6 2.4E-06 5.1E-11 54.3 11.0 108 11-122 2-117 (125)
94 PRK10148 hypothetical protein; 98.6 4.1E-06 8.9E-11 56.0 12.1 107 13-123 5-145 (147)
95 COG2514 Predicted ring-cleavag 98.4 2E-06 4.4E-11 61.8 8.4 32 8-39 167-198 (265)
96 PF14696 Glyoxalase_5: Hydroxy 98.4 7.2E-07 1.6E-11 58.8 5.0 116 2-120 2-127 (139)
97 KOG0638 4-hydroxyphenylpyruvat 98.4 1.8E-06 3.9E-11 63.3 7.3 116 6-121 14-150 (381)
98 PLN02875 4-hydroxyphenylpyruva 98.2 3.1E-05 6.7E-10 59.5 11.6 111 10-120 1-152 (398)
99 COG3185 4-hydroxyphenylpyruvat 98.1 1.1E-05 2.5E-10 60.0 5.8 115 6-120 164-318 (363)
100 PF13468 Glyoxalase_3: Glyoxal 98.0 4.3E-05 9.4E-10 52.3 8.1 112 10-121 1-139 (175)
101 KOG0638 4-hydroxyphenylpyruvat 97.3 0.00029 6.3E-09 52.0 3.9 117 5-121 174-339 (381)
102 COG3185 4-hydroxyphenylpyruvat 97.2 0.0051 1.1E-07 46.2 9.3 107 3-110 16-141 (363)
103 PF14507 CppA_C: CppA C-termin 96.9 0.0033 7.2E-08 39.0 5.3 91 9-116 5-100 (101)
104 PF06983 3-dmu-9_3-mt: 3-demet 96.9 0.013 2.9E-07 37.4 8.2 92 12-117 6-116 (116)
105 PF13669 Glyoxalase_4: Glyoxal 96.9 0.0058 1.3E-07 38.3 6.4 57 66-123 1-59 (109)
106 PF15067 FAM124: FAM124 family 96.6 0.02 4.3E-07 40.8 7.8 97 9-115 128-234 (236)
107 PF13468 Glyoxalase_3: Glyoxal 95.8 0.017 3.6E-07 39.5 4.3 54 65-121 1-56 (175)
108 cd08353 Glo_EDI_BRP_like_7 Thi 94.5 0.41 8.9E-06 31.0 7.6 57 64-120 3-70 (142)
109 cd08352 Glo_EDI_BRP_like_1 Thi 94.1 0.73 1.6E-05 28.6 8.1 58 64-122 3-61 (125)
110 cd08346 PcpA_N_like N-terminal 93.8 0.71 1.5E-05 28.7 7.6 59 64-122 1-63 (126)
111 PF13670 PepSY_2: Peptidase pr 93.6 0.41 8.8E-06 28.5 5.8 43 74-118 30-72 (83)
112 TIGR03645 glyox_marine lactoyl 92.5 1.5 3.2E-05 29.4 7.9 59 63-121 3-79 (162)
113 KOG2944 Glyoxalase [Carbohydra 91.4 0.14 2.9E-06 34.5 1.8 31 7-37 40-70 (170)
114 cd07249 MMCE Methylmalonyl-CoA 89.7 2.4 5.1E-05 26.4 6.5 56 65-121 1-57 (128)
115 cd07250 HPPD_C_like C-terminal 89.2 2.3 4.9E-05 29.5 6.5 58 64-121 3-65 (191)
116 PRK11478 putative lyase; Provi 88.9 3.7 7.9E-05 25.8 7.0 57 64-121 6-63 (129)
117 cd07242 Glo_EDI_BRP_like_6 Thi 88.5 3.6 7.8E-05 25.8 6.7 52 64-121 1-56 (128)
118 cd07241 Glo_EDI_BRP_like_3 Thi 88.4 4.2 9.2E-05 25.1 9.2 55 65-121 2-58 (125)
119 PF00903 Glyoxalase: Glyoxalas 88.4 4.2 9.2E-05 25.0 7.8 58 64-122 1-60 (128)
120 COG3865 Uncharacterized protei 88.3 5.7 0.00012 26.5 8.9 100 8-119 4-124 (151)
121 cd06587 Glo_EDI_BRP_like This 88.1 3.6 7.8E-05 24.3 6.3 53 67-123 1-54 (112)
122 cd07245 Glo_EDI_BRP_like_9 Thi 87.5 3.3 7.1E-05 24.8 5.9 55 65-123 1-56 (114)
123 cd04895 ACT_ACR_1 ACT domain-c 87.4 2.4 5.3E-05 24.7 4.8 40 75-114 15-55 (72)
124 cd08342 HPPD_N_like N-terminal 86.7 5.2 0.00011 25.7 6.8 51 65-119 1-52 (136)
125 cd08347 PcpA_C_like C-terminal 86.5 7.2 0.00016 26.0 7.5 52 64-120 1-54 (157)
126 cd07233 Glyoxalase_I Glyoxalas 83.7 7.9 0.00017 23.8 7.3 56 65-121 1-60 (121)
127 TIGR03081 metmalonyl_epim meth 82.0 8.9 0.00019 23.8 6.2 53 65-119 2-55 (128)
128 PLN02367 lactoylglutathione ly 80.6 3.5 7.5E-05 29.8 4.2 31 8-39 168-198 (233)
129 cd07255 Glo_EDI_BRP_like_12 Th 80.3 11 0.00025 23.2 6.6 51 64-121 2-54 (125)
130 PLN03042 Lactoylglutathione ly 80.0 17 0.00037 25.2 8.5 34 60-93 23-57 (185)
131 cd04897 ACT_ACR_3 ACT domain-c 78.6 8.9 0.00019 22.5 4.8 47 68-114 4-55 (75)
132 cd07263 Glo_EDI_BRP_like_16 Th 78.4 12 0.00027 22.5 9.0 51 67-119 1-54 (119)
133 PF02208 Sorb: Sorbin homologo 76.4 1.1 2.4E-05 23.5 0.5 26 7-32 9-34 (47)
134 cd08360 MhqB_like_C C-terminal 76.0 8.4 0.00018 24.6 4.7 30 8-37 61-92 (134)
135 cd04882 ACT_Bt0572_2 C-termina 73.9 8.7 0.00019 20.9 3.9 27 63-89 38-64 (65)
136 PRK10291 glyoxalase I; Provisi 73.6 11 0.00024 23.8 4.8 29 8-37 64-92 (129)
137 PRK11700 hypothetical protein; 72.8 29 0.00063 24.2 7.0 27 7-33 37-63 (187)
138 cd07237 BphC1-RGP6_C_like C-te 72.0 25 0.00055 23.1 7.9 30 62-91 7-37 (154)
139 cd08358 Glo_EDI_BRP_like_21 Th 69.1 28 0.00061 22.5 7.5 29 64-92 2-31 (127)
140 cd07235 MRD Mitomycin C resist 68.1 25 0.00055 21.6 6.0 49 65-118 1-49 (122)
141 cd04883 ACT_AcuB C-terminal AC 66.4 17 0.00036 20.3 4.1 29 64-92 41-71 (72)
142 cd07268 Glo_EDI_BRP_like_4 Thi 66.3 37 0.0008 22.8 6.9 24 10-33 2-25 (149)
143 cd07257 THT_oxygenase_C The C- 65.9 9.4 0.0002 25.2 3.3 30 8-37 66-97 (153)
144 PF07063 DUF1338: Domain of un 64.7 18 0.00039 27.3 4.8 30 61-90 181-216 (302)
145 cd08344 MhqB_like_N N-terminal 64.4 30 0.00065 21.1 6.5 28 64-91 2-29 (112)
146 cd08364 FosX FosX, a fosfomyci 63.8 35 0.00075 21.6 6.7 29 63-91 3-32 (131)
147 cd09014 BphC-JF8_C_like C-term 63.3 42 0.00091 22.4 7.0 30 63-92 5-35 (166)
148 cd07247 SgaA_N_like N-terminal 62.1 33 0.00071 20.7 6.2 28 66-93 2-30 (114)
149 cd07258 PpCmtC_C C-terminal do 61.5 16 0.00035 23.8 3.8 32 6-37 53-86 (141)
150 PF03698 UPF0180: Uncharacteri 61.3 33 0.00071 20.5 4.9 60 70-129 4-65 (80)
151 KOG4657 Uncharacterized conser 60.5 7.1 0.00015 28.0 1.9 23 18-40 145-167 (246)
152 TIGR00068 glyox_I lactoylgluta 60.4 16 0.00035 23.8 3.6 30 8-38 85-114 (150)
153 cd07240 ED_TypeI_classII_N N-t 60.3 35 0.00077 20.5 6.5 29 64-92 2-31 (117)
154 cd07256 HPCD_C_class_II C-term 59.7 48 0.001 21.9 6.9 28 64-91 3-31 (161)
155 PRK04101 fosfomycin resistance 59.1 45 0.00097 21.3 6.6 48 64-119 4-52 (139)
156 cd08343 ED_TypeI_classII_C C-t 55.0 51 0.0011 20.7 6.7 27 66-92 1-28 (131)
157 PF07494 Reg_prop: Two compone 54.0 18 0.00039 15.9 2.1 13 102-114 7-19 (24)
158 PRK03094 hypothetical protein; 52.5 49 0.0011 19.7 5.3 60 70-129 4-65 (80)
159 cd07253 Glo_EDI_BRP_like_2 Thi 52.4 51 0.0011 19.9 7.8 30 64-93 3-33 (125)
160 PF06185 YecM: YecM protein; 51.9 26 0.00057 24.4 3.6 26 8-33 33-58 (185)
161 cd04906 ACT_ThrD-I_1 First of 51.4 33 0.00071 20.2 3.6 29 64-92 40-72 (85)
162 COG5397 Uncharacterized conser 50.5 28 0.00061 26.0 3.7 52 67-120 160-212 (349)
163 cd07252 BphC1-RGP6_N_like N-te 50.4 58 0.0013 20.0 6.7 29 64-92 2-31 (120)
164 cd08348 BphC2-C3-RGP6_C_like T 49.4 63 0.0014 20.1 8.8 52 65-121 2-56 (134)
165 cd07262 Glo_EDI_BRP_like_19 Th 48.0 63 0.0014 19.7 7.0 50 65-120 1-55 (123)
166 cd04908 ACT_Bt0572_1 N-termina 47.5 44 0.00095 18.4 3.6 25 66-90 41-65 (66)
167 PF03975 CheD: CheD chemotacti 45.9 44 0.00096 21.1 3.8 40 73-114 64-103 (114)
168 PRK13498 chemoreceptor glutami 45.6 48 0.001 22.7 4.1 42 70-113 112-153 (167)
169 PF12687 DUF3801: Protein of u 45.3 59 0.0013 23.0 4.6 49 62-110 31-79 (204)
170 PRK13495 chemoreceptor glutami 45.2 50 0.0011 22.4 4.1 41 72-114 104-144 (159)
171 PF13176 TPR_7: Tetratricopept 44.6 21 0.00045 17.2 1.7 18 16-33 11-28 (36)
172 PRK13490 chemoreceptor glutami 44.5 52 0.0011 22.4 4.1 41 71-113 110-150 (162)
173 PRK13494 chemoreceptor glutami 44.3 53 0.0011 22.4 4.1 40 72-113 113-152 (163)
174 PF00585 Thr_dehydrat_C: C-ter 42.5 36 0.00078 20.6 2.8 31 62-92 48-81 (91)
175 PF02630 SCO1-SenC: SCO1/SenC; 41.8 34 0.00075 23.2 3.0 17 102-118 156-172 (174)
176 PRK03467 hypothetical protein; 41.8 1E+02 0.0023 20.5 5.7 49 73-121 5-53 (144)
177 PRK13497 chemoreceptor glutami 41.5 62 0.0014 22.5 4.2 40 73-114 112-151 (184)
178 PF11633 SUD-M: Single-strande 40.7 1E+02 0.0022 20.4 4.8 39 67-108 37-75 (142)
179 COG4747 ACT domain-containing 40.0 36 0.00077 22.1 2.6 83 9-92 41-136 (142)
180 PRK06704 RNA polymerase factor 39.0 26 0.00056 25.1 2.1 41 70-115 184-224 (228)
181 PF08445 FR47: FR47-like prote 38.7 61 0.0013 19.1 3.4 24 14-38 59-82 (86)
182 PRK13491 chemoreceptor glutami 38.4 67 0.0015 22.7 4.0 41 73-115 115-155 (199)
183 PRK13493 chemoreceptor glutami 37.8 70 0.0015 22.8 4.0 39 73-113 139-177 (213)
184 COG3254 Uncharacterized conser 37.2 1.1E+02 0.0023 19.3 4.5 20 102-121 41-60 (105)
185 PRK13488 chemoreceptor glutami 37.0 75 0.0016 21.5 4.0 41 71-113 105-145 (157)
186 PRK11657 dsbG disulfide isomer 36.7 67 0.0014 23.3 4.0 42 73-114 21-70 (251)
187 PRK13487 chemoreceptor glutami 36.6 78 0.0017 22.4 4.1 42 70-113 124-165 (201)
188 PF00583 Acetyltransf_1: Acety 36.6 37 0.0008 19.0 2.2 25 9-34 58-83 (83)
189 cd04885 ACT_ThrD-I Tandem C-te 35.0 62 0.0013 18.0 2.9 27 64-90 38-67 (68)
190 PF00379 Chitin_bind_4: Insect 34.7 60 0.0013 17.2 2.7 16 102-117 29-44 (52)
191 PF10706 Aminoglyc_resit: Amin 34.6 1.2E+02 0.0027 20.8 4.6 26 67-92 46-71 (174)
192 PRK09437 bcp thioredoxin-depen 34.1 1.3E+02 0.0029 19.4 5.3 56 63-118 63-137 (154)
193 COG1871 CheD Chemotaxis protei 33.5 1.1E+02 0.0025 20.8 4.3 45 68-114 109-153 (164)
194 PRK13489 chemoreceptor glutami 33.2 93 0.002 22.6 4.1 40 72-113 124-163 (233)
195 PF15590 Imm15: Immunity prote 32.7 29 0.00063 20.0 1.2 17 102-118 25-42 (69)
196 COG0264 Tsf Translation elonga 32.5 61 0.0013 24.4 3.2 50 73-122 32-84 (296)
197 TIGR00318 cyaB adenylyl cyclas 32.2 66 0.0014 21.9 3.2 25 68-92 6-30 (174)
198 cd03008 TryX_like_RdCVF Trypar 31.9 1.6E+02 0.0034 19.6 5.5 52 64-115 65-127 (146)
199 PF09066 B2-adapt-app_C: Beta2 31.8 1.3E+02 0.0028 18.6 5.8 40 73-112 36-75 (114)
200 cd04896 ACT_ACR-like_3 ACT dom 31.0 1.1E+02 0.0025 17.8 4.8 37 76-113 15-54 (75)
201 PF12142 PPO1_DWL: Polyphenol 30.9 69 0.0015 17.5 2.5 21 102-122 10-30 (54)
202 cd04927 ACT_ACR-like_2 Second 30.6 1.1E+02 0.0024 17.5 5.4 45 68-112 3-53 (76)
203 COG0456 RimI Acetyltransferase 30.3 77 0.0017 20.8 3.3 28 11-39 127-155 (177)
204 cd04886 ACT_ThrD-II-like C-ter 29.9 97 0.0021 16.6 3.9 25 66-90 45-72 (73)
205 PF13508 Acetyltransf_7: Acety 29.2 46 0.001 18.8 1.8 21 12-35 59-79 (79)
206 cd04907 ACT_ThrD-I_2 Second of 28.9 1.2E+02 0.0025 17.8 3.5 30 63-92 40-71 (81)
207 KOG0183 20S proteasome, regula 28.8 41 0.00089 24.1 1.7 17 102-118 6-22 (249)
208 PF06923 GutM: Glucitol operon 28.3 82 0.0018 19.8 2.9 49 72-120 23-71 (109)
209 COG4081 Uncharacterized protei 28.1 63 0.0014 21.3 2.3 35 77-114 23-57 (148)
210 PRK10140 putative acetyltransf 27.8 93 0.002 20.0 3.3 30 9-39 112-142 (162)
211 PF14133 DUF4300: Domain of un 27.5 2E+02 0.0043 21.2 5.0 36 75-115 150-185 (250)
212 KOG2741 Dimeric dihydrodiol de 27.5 1.8E+02 0.0039 22.5 4.9 82 10-92 33-129 (351)
213 PF11520 Cren7: Chromatin prot 27.1 1.2E+02 0.0027 16.9 3.6 20 100-119 36-56 (60)
214 PF11823 DUF3343: Protein of u 27.1 1.3E+02 0.0028 17.1 3.7 28 64-91 39-68 (73)
215 PF10061 DUF2299: Uncharacteri 26.6 1.9E+02 0.0042 19.0 5.3 44 77-123 1-45 (138)
216 cd04909 ACT_PDH-BS C-terminal 26.2 71 0.0015 17.5 2.2 23 67-89 44-69 (69)
217 smart00671 SEL1 Sel1-like repe 25.9 70 0.0015 14.6 1.9 15 17-31 18-32 (36)
218 COG0450 AhpC Peroxiredoxin [Po 25.7 1.5E+02 0.0032 20.9 4.0 59 62-121 65-143 (194)
219 COG3603 Uncharacterized conser 25.6 87 0.0019 20.3 2.6 27 64-90 101-127 (128)
220 PF07063 DUF1338: Domain of un 25.6 1E+02 0.0022 23.3 3.4 30 8-38 183-218 (302)
221 COG2844 GlnD UTP:GlnB (protein 25.5 2.3E+02 0.0051 24.7 5.7 52 64-115 683-740 (867)
222 TIGR00288 conserved hypothetic 24.8 2E+02 0.0043 19.6 4.4 31 62-92 103-135 (160)
223 smart00459 Sorb Sorbin homolog 24.8 46 0.001 17.8 1.0 19 14-32 16-37 (50)
224 PF12280 BSMAP: Brain specific 24.6 1.1E+02 0.0025 21.7 3.3 25 102-126 95-119 (207)
225 PF09142 TruB_C: tRNA Pseudour 23.4 1.4E+02 0.003 16.2 3.0 45 74-124 5-49 (56)
226 PF03738 GSP_synth: Glutathion 23.3 71 0.0015 19.3 1.9 42 76-119 18-60 (97)
227 PRK09831 putative acyltransfer 23.2 1.1E+02 0.0024 19.6 2.9 19 21-40 110-128 (147)
228 PRK10234 DNA-binding transcrip 23.2 1.2E+02 0.0026 19.5 3.0 50 72-121 24-73 (118)
229 KOG2792 Putative cytochrome C 23.0 1.9E+02 0.0041 21.5 4.2 22 100-121 241-262 (280)
230 PRK12332 tsf elongation factor 23.0 1.3E+02 0.0028 21.2 3.3 50 73-122 31-83 (198)
231 KOG1249 Predicted GTPases [Gen 23.0 75 0.0016 26.1 2.3 26 11-36 434-459 (572)
232 PF12512 DUF3717: Protein of u 22.9 34 0.00074 19.9 0.4 16 14-29 3-18 (71)
233 PF06877 RraB: Regulator of ri 22.8 88 0.0019 19.0 2.3 26 67-92 29-55 (104)
234 COG1389 DNA topoisomerase VI, 22.4 89 0.0019 25.3 2.6 25 102-126 206-231 (538)
235 PF13225 DUF4033: Domain of un 22.3 1.9E+02 0.0041 17.5 3.5 27 23-49 49-75 (86)
236 PF00594 Gla: Vitamin K-depend 22.3 94 0.002 15.9 1.9 14 19-32 29-42 (42)
237 PF00515 TPR_1: Tetratricopept 22.3 91 0.002 14.1 1.8 18 16-33 13-30 (34)
238 PRK10314 putative acyltransfer 22.2 97 0.0021 20.4 2.5 24 12-38 111-134 (153)
239 PRK09491 rimI ribosomal-protei 22.1 1.4E+02 0.0031 18.9 3.3 29 9-38 96-125 (146)
240 KOG3139 N-acetyltransferase [G 21.9 96 0.0021 21.2 2.4 33 6-39 114-147 (165)
241 PF00578 AhpC-TSA: AhpC/TSA fa 21.7 2E+02 0.0044 17.4 5.2 52 63-114 58-122 (124)
242 PF07411 DUF1508: Domain of un 21.6 1.2E+02 0.0025 16.0 2.3 15 101-115 5-19 (49)
243 PF14883 GHL13: Hypothetical g 21.5 1.3E+02 0.0029 22.6 3.2 17 74-90 18-34 (294)
244 cd03012 TlpA_like_DipZ_like Tl 21.1 2.2E+02 0.0048 17.7 5.7 55 64-118 56-123 (126)
245 PRK10514 putative acetyltransf 20.7 1.3E+02 0.0028 19.0 2.9 19 21-40 110-128 (145)
246 TIGR01575 rimI ribosomal-prote 20.4 1.1E+02 0.0025 18.5 2.5 30 9-39 87-117 (131)
247 COG1225 Bcp Peroxiredoxin [Pos 20.3 2.9E+02 0.0063 18.7 6.7 55 63-117 63-136 (157)
No 1
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.85 E-value=2.9e-20 Score=123.76 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=83.2
Q ss_pred CccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCC---cCCeEEcCCCCCCCC---CCCCCCCceEEEEeCCHHH-
Q 036243 5 LSLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFD---FHGAWKYPDRMPSIG---KIINPKDNHISFQCENMAT- 77 (146)
Q Consensus 5 m~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~---~~~~~l~~~~~~~~~---~~~~~~~~hl~~~v~d~~~- 77 (146)
+.+.+|+|++|.|+|++++.+||+++|||++.......+ ..+.|+......... ....++..|+||.|+++++
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~~h~~~~~~~~~~~~~Hiaf~v~d~~~l 81 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNKPHDIAFVGGPDGKLHHFSFFLESWEDV 81 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCCcceEEEecCCCCCceEEEEEcCCHHHH
Confidence 567899999999999999999999999998755432111 123455321111110 1124578899999998887
Q ss_pred --HHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 78 --VERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 78 --~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
+.++|+++|+++..++......+++++||.|||||.|||.....
T Consensus 82 ~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~~~ 127 (143)
T cd07243 82 LKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAGGY 127 (143)
T ss_pred HHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecCce
Confidence 56899999999876655433123478999999999999987543
No 2
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.84 E-value=4.4e-20 Score=121.12 Aligned_cols=111 Identities=19% Similarity=0.375 Sum_probs=80.1
Q ss_pred ccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCC--C--------cCCeEEcCCCCCCCCCCCCCCCceEEEEeC--
Q 036243 6 SLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSF--D--------FHGAWKYPDRMPSIGKIINPKDNHISFQCE-- 73 (146)
Q Consensus 6 ~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~--~--------~~~~~l~~~~~~~~~~~~~~~~~hl~~~v~-- 73 (146)
|+.+|+|++|.|+|++++++||+++||++.....+.. . .++.|+. +.........+..|++|.|+
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~---l~~~~~~~~~~~~Hiaf~v~~~ 77 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIA---IMEGDSLQERTYNHIAFKISDS 77 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEE---EecCCCCCCCCceEEEEEcCHH
Confidence 4678999999999999999999999999876553311 1 1122331 11111112336789999998
Q ss_pred CHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeC
Q 036243 74 NMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 120 (146)
+++++.++|+++|+++........+ .++++||.|||||.|||....
T Consensus 78 ~ld~~~~~l~~~gv~~~~~~~~~~~-~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 78 DVDEYTERIKALGVEMKPPRPRVQG-EGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred HHHHHHHHHHHCCCEEecCCccccC-CceEEEEECCCCCEEEEecCC
Confidence 7999999999999988654322222 248999999999999999643
No 3
>PRK11478 putative lyase; Provisional
Probab=99.84 E-value=1.3e-19 Score=117.99 Aligned_cols=113 Identities=20% Similarity=0.318 Sum_probs=79.4
Q ss_pred CccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCC-----C----CCcC-CeEEc--CCCCCCC--CCCCCCCCceEEE
Q 036243 5 LSLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPG-----S----FDFH-GAWKY--PDRMPSI--GKIINPKDNHISF 70 (146)
Q Consensus 5 m~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~-----~----~~~~-~~~l~--~~~~~~~--~~~~~~~~~hl~~ 70 (146)
|++.+++|++|.|+|+++|++||+++|||++..... . +... +..+. ....+.. ......+..|++|
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~g~~hi~f 81 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAF 81 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCCCCCCCceeEEEE
Confidence 578899999999999999999999999999864311 0 0011 11111 0000110 0122346789999
Q ss_pred EeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 71 QCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 71 ~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
.|+|+++++++|+++|+++........ .+.+.+||.|||||.|||++
T Consensus 82 ~v~d~~~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 82 SVDDIDAAVAHLESHNVKCEAIRVDPY-TQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EeCCHHHHHHHHHHcCCeeeccccCCC-CCCEEEEEECCCCCEEEEEe
Confidence 999999999999999999875432221 23488999999999999986
No 4
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.84 E-value=1.8e-19 Score=119.39 Aligned_cols=111 Identities=16% Similarity=0.293 Sum_probs=79.5
Q ss_pred cceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCC--------CCcCC-----eEEc---------------CCCCCC--
Q 036243 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGS--------FDFHG-----AWKY---------------PDRMPS-- 56 (146)
Q Consensus 7 ~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~--------~~~~~-----~~l~---------------~~~~~~-- 56 (146)
+.+++||+|.|+|+++|++||++ |||++...... ....+ .++. +.....
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCC
Confidence 46899999999999999999998 99987654320 00000 1111 101111
Q ss_pred CCCCCCCCCceEEEEeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 57 IGKIINPKDNHISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 57 ~~~~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
.......+..|+||.|+|+++++++|+++|+++..++.... .+.+.+||+||||+.|||++.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~-~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYE-NSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecC-CCeEEEEEECCCCCEEEeeec
Confidence 11123457789999999999999999999999987654433 345899999999999999984
No 5
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.84 E-value=1.2e-19 Score=120.21 Aligned_cols=115 Identities=26% Similarity=0.487 Sum_probs=85.4
Q ss_pred ccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCC---CCCcCCeEEcCCCCCCCC-CCCCCCCceEEEEeC--CHHHHH
Q 036243 6 SLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPG---SFDFHGAWKYPDRMPSIG-KIINPKDNHISFQCE--NMATVE 79 (146)
Q Consensus 6 ~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~~~~~~hl~~~v~--d~~~~~ 79 (146)
|+.+|+|+.|.|+|++++++||+++||+++....+ .+..++.++.-...+... .....+..|++|.++ |+++++
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~g~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~dv~~~~ 80 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGRKTAYFDLNGLWIALNEEKDIPRNEIHQSYTHIAFSIEEEDFDHWY 80 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecCeeEEEecCCeEEEeeccCCCCCccCCCCeeEEEEEecHHHHHHHH
Confidence 56789999999999999999999999999876533 123445555311111111 122345689999998 999999
Q ss_pred HHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 80 RKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 80 ~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
++++++|+++...+....+ +.+.+||.|||||+|||.+...
T Consensus 81 ~~l~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~~ 121 (139)
T PRK04101 81 QRLKENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGTL 121 (139)
T ss_pred HHHHHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCCH
Confidence 9999999998766544332 4499999999999999998654
No 6
>PRK06724 hypothetical protein; Provisional
Probab=99.83 E-value=2e-19 Score=117.64 Aligned_cols=112 Identities=18% Similarity=0.292 Sum_probs=79.3
Q ss_pred ccceeeEEEEEcCCHHHHHHHHHHhh---CCeeeecCCCCCcCCe--EEcCCCCCCCCCCCCCCCceEEEEe---CCHHH
Q 036243 6 SLKSLNHFSLVCRSVEKSLDFYQNVI---GFLPIRRPGSFDFHGA--WKYPDRMPSIGKIINPKDNHISFQC---ENMAT 77 (146)
Q Consensus 6 ~~~~i~hv~l~v~D~~~a~~Fy~~~L---g~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~hl~~~v---~d~~~ 77 (146)
|..+|+||.|.|+|+++|++||+++| |++...... +..+.. ++.. ..... ...++..|+||.| +++++
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~-~~~g~~~l~l~~--~~~~~-~~~~g~~h~af~v~~~~dvd~ 79 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA-YSTGESEIYFKE--VDEEI-VRTLGPRHICYQAINRKVVDE 79 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe-eeCCCeeEEEec--CCccc-cCCCCceeEEEecCChHHHHH
Confidence 45689999999999999999999966 666532111 111222 2211 11101 2235788999998 68999
Q ss_pred HHHHHHhcCceEeecceecC--CeeeEEEEEECCCCCeEEEEeeCC
Q 036243 78 VERKLTEMKIEYVKSRVEEG--GIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 78 ~~~~l~~~G~~~~~~~~~~~--g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
+.++|+++|+++..+|.... +.+.+.++|.|||||.||++..+.
T Consensus 80 ~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~~ 125 (128)
T PRK06724 80 VAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTPN 125 (128)
T ss_pred HHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCCC
Confidence 99999999999877765432 345589999999999999987643
No 7
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.83 E-value=5e-19 Score=116.73 Aligned_cols=112 Identities=12% Similarity=0.085 Sum_probs=83.7
Q ss_pred eeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCC-------CcCCeEEc--C-CCCCCC----CCCCCCCCceEEEEeCCH
Q 036243 10 LNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSF-------DFHGAWKY--P-DRMPSI----GKIINPKDNHISFQCENM 75 (146)
Q Consensus 10 i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~-------~~~~~~l~--~-~~~~~~----~~~~~~~~~hl~~~v~d~ 75 (146)
|+|+.|.|.|++++++||+++|||++....... ..++..+. . ...... ......+..|++|.|+|+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~Dv 80 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSEDKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVDDA 80 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeCCH
Confidence 589999999999999999999999987754321 11222221 1 110010 012345788999999999
Q ss_pred HHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCC
Q 036243 76 ATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVL 122 (146)
Q Consensus 76 ~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~ 122 (146)
++++++|+++|+++..+|...+ ++.+.++++||||++|||++....
T Consensus 81 da~~~~l~~~G~~v~~~p~~~~-~~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 81 AAAYERAVARGAKPVQEPVEEP-GELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred HHHHHHHHHcCCeEccCceecC-CeEEEEEEeccCCcEEEEEecCCC
Confidence 9999999999999998876633 456999999999999999996665
No 8
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.82 E-value=1.9e-19 Score=121.07 Aligned_cols=123 Identities=18% Similarity=0.097 Sum_probs=85.8
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCC---CCcCCeEEcCCC---------CCCCCCCCCCCCceEEEEeCCHH
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGS---FDFHGAWKYPDR---------MPSIGKIINPKDNHISFQCENMA 76 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~---~~~~~~~l~~~~---------~~~~~~~~~~~~~hl~~~v~d~~ 76 (146)
+|+||+|.|+|+++|++||+++||+++...... ......|+.... +... ....++..|+||.|+|++
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~~~~g~~Hiaf~v~die 79 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALA-QGPESGVHHAAFEVHDFD 79 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHh-cCCCCceeEEEEEcCCHH
Confidence 589999999999999999999999998654221 112234543211 0001 122468899999999999
Q ss_pred HHH---HHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCCCcccccccccc
Q 036243 77 TVE---RKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVLPVVPLAGDTIR 133 (146)
Q Consensus 77 ~~~---~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~~~~~~~~~~~~ 133 (146)
++. ++|+++|+++..++.........++|+.|||||.|||..... .+.++.+....
T Consensus 80 ~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~-~~~~~~~~~~~ 138 (153)
T cd07257 80 AQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGD-LVNADTPPGVH 138 (153)
T ss_pred HHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCce-eEcCCCCcccc
Confidence 986 999999999886654433112357899999999999997544 44445444333
No 9
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.81 E-value=9.6e-19 Score=117.19 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=82.3
Q ss_pred ccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCC--cCCeEEcCC------------CCCCCCCCCCCCCceEEEE
Q 036243 6 SLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFD--FHGAWKYPD------------RMPSIGKIINPKDNHISFQ 71 (146)
Q Consensus 6 ~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~--~~~~~l~~~------------~~~~~~~~~~~~~~hl~~~ 71 (146)
...+|+|+.|.|+|+++|.+||+++|||++....+... ....++... ...........+..|++|.
T Consensus 14 ~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f~ 93 (150)
T TIGR00068 14 KKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAIG 93 (150)
T ss_pred CCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEEe
Confidence 46789999999999999999999999999865432111 111222100 0000001123467899999
Q ss_pred eCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 72 CENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 72 v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
|+|+++++++|.++|+++...+.+..+...+.+||.|||||+|||++...
T Consensus 94 v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 94 VDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred cCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence 99999999999999998876664333223378899999999999998653
No 10
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.81 E-value=1.1e-18 Score=112.43 Aligned_cols=113 Identities=24% Similarity=0.413 Sum_probs=81.8
Q ss_pred cceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCC-----CCcCCeEEc--CCCCC--CCCCCCCCCCceEEEEeC-CHH
Q 036243 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGS-----FDFHGAWKY--PDRMP--SIGKIINPKDNHISFQCE-NMA 76 (146)
Q Consensus 7 ~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~-----~~~~~~~l~--~~~~~--~~~~~~~~~~~hl~~~v~-d~~ 76 (146)
+.+|+|+.|.|+|++++++||+++||++.....+. +..++..+. ..... .......++..|++|.++ +++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~hi~~~~~~~~~ 80 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEVGRKALRFGSQKINLHPVGGEFEPAAGSPGPGSDDLCLITEPPID 80 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccCCceEEEeCCEEEEEecCCCccCcCccCCCCCCceEEEEecccHH
Confidence 46899999999999999999999999998775431 111222221 10100 011123467899999997 499
Q ss_pred HHHHHHHhcCceEeecceecCC--eeeEEEEEECCCCCeEEEEee
Q 036243 77 TVERKLTEMKIEYVKSRVEEGG--IYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 77 ~~~~~l~~~G~~~~~~~~~~~g--~~~~~~~~~DPdG~~iel~~~ 119 (146)
+++++++++|+++..++.+..+ ..++.+||.|||||+||++++
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 81 ELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred HHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 9999999999998876654322 134889999999999999874
No 11
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.81 E-value=5.3e-19 Score=114.90 Aligned_cols=111 Identities=17% Similarity=0.254 Sum_probs=80.6
Q ss_pred ccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcCCCCCCC--CCCCCCCCceEEEEeCC---HHHHHH
Q 036243 6 SLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPDRMPSI--GKIINPKDNHISFQCEN---MATVER 80 (146)
Q Consensus 6 ~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~hl~~~v~d---~~~~~~ 80 (146)
++.+|.|+.|.|+|+++|.+||+++|||++....+ ...|+........ .....++..|++|.|++ ++++++
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----~~~~l~~~~~~~~i~l~~~~~~~~~iaf~v~~~~dv~~~~~ 78 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA----KATYFRSDARDHTLVYIEGDPAEQASGFELRDDDALESAAT 78 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC----CeEEEEcCCccEEEEEEeCCCceEEEEEEECCHHHHHHHHH
Confidence 57899999999999999999999999999865533 2345432111100 00112567899999975 999999
Q ss_pred HHHhcCceEeecceecC--CeeeEEEEEECCCCCeEEEEeeC
Q 036243 81 KLTEMKIEYVKSRVEEG--GIYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 81 ~l~~~G~~~~~~~~~~~--g~~~~~~~~~DPdG~~iel~~~~ 120 (146)
+++++|+++..++.... ..+.+++||.|||||.||+...+
T Consensus 79 ~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 79 ELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred HHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 99999998876543221 11236789999999999998644
No 12
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.81 E-value=1.4e-18 Score=112.33 Aligned_cols=110 Identities=15% Similarity=0.239 Sum_probs=79.0
Q ss_pred cceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcC-CCCCC----CCCCCCCCCceEEEEeC---CHHHH
Q 036243 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYP-DRMPS----IGKIINPKDNHISFQCE---NMATV 78 (146)
Q Consensus 7 ~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~-~~~~~----~~~~~~~~~~hl~~~v~---d~~~~ 78 (146)
+.+|+|+.|.|+|+++|++||+++|||++...... +..++.. ..... ......++..|++|.++ +++++
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~hiaf~v~~~~dv~~~ 78 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDDQ---GRVYLKAWDEFDHHSIVLREADTAGLDFMGFKVLDDADLEKL 78 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecCC---ceEEEEccCCCcccEEEeccCCCCCeeEEEEEeCCHHHHHHH
Confidence 57899999999999999999999999998765421 1233321 00000 00123456789999997 88899
Q ss_pred HHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 79 ERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 79 ~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
.++++++|+++...+.......++.+||.|||||+||+...
T Consensus 79 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 119 (122)
T cd07265 79 EARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYAD 119 (122)
T ss_pred HHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEe
Confidence 99999999998765432221123789999999999999864
No 13
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.81 E-value=9.2e-19 Score=113.43 Aligned_cols=109 Identities=23% Similarity=0.326 Sum_probs=79.5
Q ss_pred cceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCC---Cc-CCeEEcCCCCCCCCCCCCCCCceEEEEeC--CHHHHHH
Q 036243 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSF---DF-HGAWKYPDRMPSIGKIINPKDNHISFQCE--NMATVER 80 (146)
Q Consensus 7 ~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~~~~~~hl~~~v~--d~~~~~~ 80 (146)
..+++|+.|.|+|+++|++||+++||++.....+.. .. ++..+. +... ....+..|++|.++ |++++++
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~l~---~~~~--~~~~~~~h~a~~v~~~dl~~~~~ 76 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPFGPFAVVKLDNGVSLD---FAQP--DGEIPPQHYAFLVSEEEFDRIFA 76 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccCCEEEEEcCCCcEEE---EecC--CCCCCcceEEEEeCHHHHHHHHH
Confidence 468999999999999999999999999887643311 00 111110 0010 12345689999887 6999999
Q ss_pred HHHhcCceEeecceec------CCeeeEEEEEECCCCCeEEEEeeC
Q 036243 81 KLTEMKIEYVKSRVEE------GGIYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 81 ~l~~~G~~~~~~~~~~------~g~~~~~~~~~DPdG~~iel~~~~ 120 (146)
+++++|+++...+... ...+++.+||.|||||.|||++.+
T Consensus 77 ~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 77 RIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred HHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 9999999987655432 113459999999999999999875
No 14
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.81 E-value=5.1e-19 Score=116.07 Aligned_cols=112 Identities=23% Similarity=0.436 Sum_probs=82.1
Q ss_pred eeEEEEEcCCHHHHHHHHHHhhCCeeeecCCC---CCcCCeEEcCCCCCCC-CCCCCCCCceEEEEeC--CHHHHHHHHH
Q 036243 10 LNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGS---FDFHGAWKYPDRMPSI-GKIINPKDNHISFQCE--NMATVERKLT 83 (146)
Q Consensus 10 i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~~~~~~hl~~~v~--d~~~~~~~l~ 83 (146)
|+||.|.|+|++++++||+++||+++....+. +..++.++.-...+.. ......+..|++|.++ ++++++++++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~dld~~~~~l~ 80 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGEKTAYFTIGGTWLALNEEPDIPRNEIRQSYTHIAFTIEDSEFDAFYTRLK 80 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCCccceEeeCceEEEEEccCCCCcCCcCccceEEEEEecHHHHHHHHHHHH
Confidence 68999999999999999999999998655332 3344555531111111 1122356789999998 5999999999
Q ss_pred hcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCC
Q 036243 84 EMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVL 122 (146)
Q Consensus 84 ~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~ 122 (146)
++|+++..++....+ +.+.+||.|||||+|||.+....
T Consensus 81 ~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~~~ 118 (131)
T cd08363 81 EAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGTLA 118 (131)
T ss_pred HcCCcccCCCccccC-cceEEEEECCCCCEEEEecCcHH
Confidence 999998755433322 34899999999999999986653
No 15
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.81 E-value=1.3e-18 Score=118.08 Aligned_cols=114 Identities=15% Similarity=0.241 Sum_probs=77.3
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecC----CC---C--------C-----cCCeEEc-C----------CCCCC
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRP----GS---F--------D-----FHGAWKY-P----------DRMPS 56 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~----~~---~--------~-----~~~~~l~-~----------~~~~~ 56 (146)
.+++||+|.|+|+++|++||+++|||++..+. +. . . +...++. . .....
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 57999999999999999999999999875321 00 0 0 1111221 0 01100
Q ss_pred CCC---CCCCCCceEEEEeCCHHHHHHHHHhcCceEeecc-ee-cCC-eeeEEEEEECCCCCeEEEEeeCC
Q 036243 57 IGK---IINPKDNHISFQCENMATVERKLTEMKIEYVKSR-VE-EGG-IYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 57 ~~~---~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~-~~-~~g-~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
... ....+..|+||.|+|+++++++|+++|+++...+ .. ..+ ...+.+|++|||||.|||++...
T Consensus 83 ~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 83 PEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 000 1236789999999999999999999998764332 11 111 12378999999999999998654
No 16
>PLN02300 lactoylglutathione lyase
Probab=99.80 E-value=1.5e-18 Score=127.58 Aligned_cols=119 Identities=15% Similarity=0.187 Sum_probs=86.8
Q ss_pred CccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCC--CCCcCCeEEcCC------------CCCCCCCCCCCCCceEEE
Q 036243 5 LSLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPG--SFDFHGAWKYPD------------RMPSIGKIINPKDNHISF 70 (146)
Q Consensus 5 m~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~--~~~~~~~~l~~~------------~~~~~~~~~~~~~~hl~~ 70 (146)
|.+.+|+|++|.|+|++++++||+++|||++....+ ...+...|+... ...........+..|++|
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~ 99 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGI 99 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEE
Confidence 668999999999999999999999999999876432 111222333210 000001123457889999
Q ss_pred EeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCCC
Q 036243 71 QCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVLP 123 (146)
Q Consensus 71 ~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~~ 123 (146)
.|+|+++++++++++|+++...+...++.+.+.+||.|||||.|||++....+
T Consensus 100 ~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~ 152 (286)
T PLN02300 100 AVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTP 152 (286)
T ss_pred EeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCC
Confidence 99999999999999999988776554432346789999999999999975443
No 17
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=2.2e-18 Score=111.13 Aligned_cols=110 Identities=25% Similarity=0.326 Sum_probs=78.5
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCC-Cc-CCeEEcCC-----CCCCCCCCCCCCCceEEEEeCCHHHHHHH
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSF-DF-HGAWKYPD-----RMPSIGKIINPKDNHISFQCENMATVERK 81 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~-~~-~~~~l~~~-----~~~~~~~~~~~~~~hl~~~v~d~~~~~~~ 81 (146)
++.|+.|.|+|+++|++||+++||+++....+.. .+ .+..+... ...........+..|++|.|+|+++++++
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~dvd~~~~~ 81 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFGENVTFEGGFALQEGYSWLEGISKADIIEKSNNFELYFEEEDFDAFLDK 81 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccCceEEEeccceeccchhhhccCCcccccccCCceEEEEEehhhHHHHHH
Confidence 6899999999999999999999999886543311 01 11111100 00011112334567999999999999999
Q ss_pred HHhcCc-eEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 82 LTEMKI-EYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 82 l~~~G~-~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
|+++|+ ++..++...+ ++.+.++|+|||||+|||.+.
T Consensus 82 l~~~g~~~~~~~~~~~~-~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 82 LKRYDNIEYVHPIKEHP-WGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred HHhcCCcEEecCcccCC-CccEEEEEECCCCCEEEEecc
Confidence 999985 6776665443 456999999999999999874
No 18
>PLN02367 lactoylglutathione lyase
Probab=99.80 E-value=1.6e-18 Score=122.46 Aligned_cols=114 Identities=20% Similarity=0.270 Sum_probs=82.5
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCC--CcCCeEE--------------------------c---CCCCC-
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSF--DFHGAWK--------------------------Y---PDRMP- 55 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~--~~~~~~l--------------------------~---~~~~~- 55 (146)
-.++|++|.|+|+++|++||+++|||++..+.+.. .+..+++ . +.+..
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 46899999999999999999999999987754311 1111111 1 00000
Q ss_pred -----CCC--CCCCCCCceEEEEeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCCC
Q 036243 56 -----SIG--KIINPKDNHISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVLP 123 (146)
Q Consensus 56 -----~~~--~~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~~ 123 (146)
... .....|..|+||.|+|+++++++|+++|+++...+.... +.+.++++|||||+|||++.....
T Consensus 154 ~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~--~~riaFIkDPDGn~IEL~e~~~~~ 226 (233)
T PLN02367 154 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGK--MKGIAFIKDPDGYWIEIFDLKTIG 226 (233)
T ss_pred cccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCC--ceEEEEEECCCCCEEEEEeccccc
Confidence 000 011258899999999999999999999999987664322 237889999999999999976654
No 19
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.80 E-value=2.1e-18 Score=111.12 Aligned_cols=110 Identities=25% Similarity=0.336 Sum_probs=78.0
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCC---------c-CCeEE---cCCCC-CCCCCCCCCCCceEEEEeC
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFD---------F-HGAWK---YPDRM-PSIGKIINPKDNHISFQCE 73 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~---------~-~~~~l---~~~~~-~~~~~~~~~~~~hl~~~v~ 73 (146)
.+++|++|.|.|++++++||+++||++......... . ++..+ ..... .........+..|++|.|+
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~h~~~~v~ 81 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPSYPEACGLRHLAFSVE 81 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCCCcCCCceEEEEEeC
Confidence 579999999999999999999999999875421000 0 11111 01111 1111123357789999999
Q ss_pred CHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 74 NMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
|+++++++|+++|+++...+.... .+.+.+|+.||+||+|||++
T Consensus 82 d~~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 82 DIEAAVKHLKAKGVEVEPIRVDEF-TGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CHHHHHHHHHHcCCccccccccCC-CceEEEEEECCCCCEEEecC
Confidence 999999999999999876543222 24478999999999999974
No 20
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.80 E-value=2.6e-18 Score=118.65 Aligned_cols=114 Identities=20% Similarity=0.299 Sum_probs=81.7
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCC--CCCcCCeEE-------------------c----------CCCCCC
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPG--SFDFHGAWK-------------------Y----------PDRMPS 56 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~--~~~~~~~~l-------------------~----------~~~~~~ 56 (146)
.+++|++|.|+|+++|++||+++|||++..+.. ...+...++ . +.....
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 578999999999999999999999999876632 111111111 0 000000
Q ss_pred ------CC--CCCCCCCceEEEEeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCCC
Q 036243 57 ------IG--KIINPKDNHISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVLP 123 (146)
Q Consensus 57 ------~~--~~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~~ 123 (146)
.. .....|..|++|.|+|+++++++|+++|+.+...+....+ .+.+||+|||||+|||++...+.
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~--~~~~fi~DPdG~~IEl~e~~~~~ 178 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKM--KGLAFIKDPDGYWIEIFDLKRIG 178 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCc--eeEEEEECCCCCEEEEEECCCch
Confidence 00 0112478999999999999999999999999866543222 36788899999999999977764
No 21
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.80 E-value=2.3e-18 Score=111.20 Aligned_cols=110 Identities=18% Similarity=0.244 Sum_probs=80.2
Q ss_pred CccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcC-CC-CCC---CCCCCCCCCceEEEEeC---CHH
Q 036243 5 LSLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYP-DR-MPS---IGKIINPKDNHISFQCE---NMA 76 (146)
Q Consensus 5 m~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~-~~-~~~---~~~~~~~~~~hl~~~v~---d~~ 76 (146)
|.+.+|+|+.|.|+|+++|++||+++|||++....+ ...++.. .. ... ......++..|++|.++ +++
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~~~~l~~~~~~~~~~~~l~~~~~~~~~h~af~v~~~~~v~ 77 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----QSVYLRAWGDYEHHSLKLTESPEAGLGHIAWRASSPEALE 77 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----CeEEEEeccCCCccEEEEeeCCCCceEEEEEEcCCHHHHH
Confidence 678899999999999999999999999999877644 2233321 10 000 00123457889999997 688
Q ss_pred HHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeC
Q 036243 77 TVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 77 ~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 120 (146)
++.++++++|+++...+... + .+..+||.|||||.||+....
T Consensus 78 ~~~~~l~~~G~~~~~~~~~~-~-~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 78 RRVAALEASGLGIGWIEGDP-G-HGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred HHHHHHHHcCCccccccCCC-C-CcceEEEECCCCCEEEEEEec
Confidence 88999999999875432212 2 227889999999999998643
No 22
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.80 E-value=3.8e-18 Score=109.06 Aligned_cols=106 Identities=16% Similarity=0.146 Sum_probs=78.9
Q ss_pred cceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcCCC-CCC---CCCCCCCCCceEEEEeCCHHHHHHHH
Q 036243 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPDR-MPS---IGKIINPKDNHISFQCENMATVERKL 82 (146)
Q Consensus 7 ~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~~~-~~~---~~~~~~~~~~hl~~~v~d~~~~~~~l 82 (146)
+.+++|+.|.|+|+++|++||++ |||+.....+ +..|+.... ... ......++..|++|.|+|.+++.+.+
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~v~~~~~~~~~~ 75 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD----DELYYRGYGTDPFVYVARKGEKARFVGAAFEAASRADLEKAA 75 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC----CeEEEecCCCccEEEEcccCCcCcccEEEEEECCHHHHHHHH
Confidence 46899999999999999999999 9998876543 344543211 100 01122357889999999999999999
Q ss_pred HhcCceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 83 TEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 83 ~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
++.|......+. .+ .+.+.++|.|||||.|||+..
T Consensus 76 ~~~g~~~~~~~~-~~-~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 76 ALPGASVIDDLE-AP-GGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred HcCCCeeecCCC-CC-CCceEEEEECCCCCEEEEEec
Confidence 999998765432 12 234899999999999999874
No 23
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.80 E-value=1.9e-18 Score=117.67 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=82.6
Q ss_pred CCccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCC--CCCcCCeEEcCCC----C--CCCCCCCCCCCceEEEEeCC-
Q 036243 4 PLSLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPG--SFDFHGAWKYPDR----M--PSIGKIINPKDNHISFQCEN- 74 (146)
Q Consensus 4 ~m~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~--~~~~~~~~l~~~~----~--~~~~~~~~~~~~hl~~~v~d- 74 (146)
.|.+.+|+|++|.|+|++++++||+++|||+...... .....+.|+.... + .........+..|+||.|+|
T Consensus 1 ~~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~hiaf~v~~~ 80 (166)
T cd09014 1 GVGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDPAGARGRLHHLAYALDTR 80 (166)
T ss_pred CCCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCCCCCCCCceEEEEECCCH
Confidence 3778999999999999999999999999998765421 1111234543211 0 01111223457899999985
Q ss_pred --HHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 75 --MATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 75 --~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
+++++++|+++|+++...+...+....+++|+.|||||+|||++...
T Consensus 81 ~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 129 (166)
T cd09014 81 EDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGGG 129 (166)
T ss_pred HHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcCC
Confidence 45778999999999876654433223357999999999999999733
No 24
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.80 E-value=2.2e-18 Score=111.14 Aligned_cols=108 Identities=15% Similarity=0.190 Sum_probs=74.5
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhhCCeeeecC--CCCCcCCeEEcC-----------CCCCCC-CCCCCCCCceEEEEeC-
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVIGFLPIRRP--GSFDFHGAWKYP-----------DRMPSI-GKIINPKDNHISFQCE- 73 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~--~~~~~~~~~l~~-----------~~~~~~-~~~~~~~~~hl~~~v~- 73 (146)
+++|++|.|+|++++++||+++|||+..... ....+...|+.. ...... ......+..|+||.|+
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~v~~ 80 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSPNEGERTGWAHLAFSVGS 80 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCcccCCCCceEEEEEECCC
Confidence 4799999999999999999999999875431 111111222210 011110 1123357789999996
Q ss_pred --CHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEE
Q 036243 74 --NMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEIC 117 (146)
Q Consensus 74 --d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 117 (146)
++++++++|+++|+++...+...+ .+.+.+++.|||||.|||.
T Consensus 81 ~~~v~~~~~~l~~~g~~~~~~~~~~~-~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 81 KEAVDELTERLRADGYLIIGEPRTTG-DGYYESVILDPEGNRIEIT 125 (125)
T ss_pred HHHHHHHHHHHHHCCCEEEeCceecC-CCeEEEEEECCCCCEEEeC
Confidence 589999999999999887653322 2336678999999999984
No 25
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.79 E-value=4.8e-18 Score=108.31 Aligned_cols=107 Identities=14% Similarity=0.138 Sum_probs=78.0
Q ss_pred eeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcCCC-----CCCCCC--CCCCCCceEEEEeCCHHHHHHHH
Q 036243 10 LNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPDR-----MPSIGK--IINPKDNHISFQCENMATVERKL 82 (146)
Q Consensus 10 i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~~~-----~~~~~~--~~~~~~~hl~~~v~d~~~~~~~l 82 (146)
++|++|.|+|++++++||+++||+++....+ ....-.++.... +..... ...+...|++|.++|+++++++|
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~di~~~~~~l 79 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDYAVFSTGGGAVGGLMKAPEPAAGSPPGWLVYFAVDDVDAAAARV 79 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCceEEEEeCCccEEEEecCCCCCCCCCCeEEEEEEeCCHHHHHHHH
Confidence 4799999999999999999999999876552 000111111110 000000 13456779999999999999999
Q ss_pred HhcCceEeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 83 TEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 83 ~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
+++|+++..++...++ +.+.+++.|||||.|+|++
T Consensus 80 ~~~g~~~~~~~~~~~~-~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 80 EAAGGKVLVPPTDIPG-VGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHCCCEEEeCCcccCC-cEEEEEEECCCCCEEEeEC
Confidence 9999999877755442 3489999999999999974
No 26
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.79 E-value=2.6e-18 Score=110.39 Aligned_cols=106 Identities=27% Similarity=0.365 Sum_probs=77.1
Q ss_pred eeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCC--CcCCeEEcCCC------------CCC-CCCCCCCCCceEEEEeCC
Q 036243 10 LNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSF--DFHGAWKYPDR------------MPS-IGKIINPKDNHISFQCEN 74 (146)
Q Consensus 10 i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~--~~~~~~l~~~~------------~~~-~~~~~~~~~~hl~~~v~d 74 (146)
++|++|.|+|+++|++||+++||++........ .....++.... ... .......+..|++|.++|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 589999999999999999999999987643211 11122332110 000 011222367899999999
Q ss_pred HHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEE
Q 036243 75 MATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEIC 117 (146)
Q Consensus 75 ~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 117 (146)
+++++++++++|+++...+.... +.+.+||.|||||+|||+
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDGG--MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccCC--CceEEEEECCCCCEEEeC
Confidence 99999999999999998765543 337889999999999985
No 27
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.79 E-value=3.3e-18 Score=115.99 Aligned_cols=120 Identities=21% Similarity=0.281 Sum_probs=80.9
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCC--CCcCCeEEcCCC-CCCC--CCCCCCCCceEEEEeCC---HHHHH
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGS--FDFHGAWKYPDR-MPSI--GKIINPKDNHISFQCEN---MATVE 79 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~--~~~~~~~l~~~~-~~~~--~~~~~~~~~hl~~~v~d---~~~~~ 79 (146)
.+|+|++|.|+|+++|++||+++|||++...... ......|+.... .... .....++..|++|.|+| +++++
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~~~~~~~~~Hiaf~v~~~~~v~~~~ 81 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALTGGNGPRLHHVAFWVPEPHNIIRTC 81 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEecCCCCceeEEEEEcCCHHHHHHHH
Confidence 5799999999999999999999999988653221 111123443111 1111 01234578899999985 77788
Q ss_pred HHHHhcCceE--eecceecCCeeeEEEEEECCCCCeEEEEeeCCCCcccc
Q 036243 80 RKLTEMKIEY--VKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVLPVVPL 127 (146)
Q Consensus 80 ~~l~~~G~~~--~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~~~~~~ 127 (146)
++|+++|+.. ..++...+..+.+++||.|||||.||+++.......|+
T Consensus 82 ~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~~~~~~~~ 131 (161)
T cd07256 82 DLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGDYYTGDPD 131 (161)
T ss_pred HHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecCceeeCCC
Confidence 9999999863 22332222123478999999999999998665545444
No 28
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.79 E-value=2.8e-18 Score=110.79 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=78.9
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcCCCCCCC---CCCCCCCCceEEEEeC---CHHHHHHH
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPDRMPSI---GKIINPKDNHISFQCE---NMATVERK 81 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~hl~~~v~---d~~~~~~~ 81 (146)
++|.|++|.|+|+++|++||+++|||+...... ....|+........ ......+..|++|.++ |+++++++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~v~~~~dl~~~~~~ 77 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---DGALYLRMDDRAWRIAVHPGEADDLAYAGWEVADEAALDALAAR 77 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC---CCeEEEEccCCceEEEEEeCCCCceeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999998865522 12344432111100 0123356789999997 58889999
Q ss_pred HHhcCceEeecceec--CCeeeEEEEEECCCCCeEEEEeeC
Q 036243 82 LTEMKIEYVKSRVEE--GGIYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 82 l~~~G~~~~~~~~~~--~g~~~~~~~~~DPdG~~iel~~~~ 120 (146)
|+++|+++...+... ...+.+.+||+|||||.||++..+
T Consensus 78 l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 78 LRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 999999998654221 111237899999999999999754
No 29
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.79 E-value=5.8e-18 Score=111.36 Aligned_cols=111 Identities=18% Similarity=0.138 Sum_probs=79.6
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcCC--CCCC-----CCCCCCCCCceEEEEeCCHHHHH-
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPD--RMPS-----IGKIINPKDNHISFQCENMATVE- 79 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~~--~~~~-----~~~~~~~~~~hl~~~v~d~~~~~- 79 (146)
.+++|++|.|+|+++|++||+++||+++...... ...|+... .... .......+..|++|.|+|++++.
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~---~~~~~~~~~~~~~~~i~l~~~~~~~~g~~hiaf~v~d~~~~~~ 78 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG---RGAFLRAAGGGDHHNLFLIKTPAPMAGFHHAAFEVGDIDEVML 78 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC---cEEEEECCCCCCCcEEEEecCCCCCCcceEEEEEeCCHHHHHH
Confidence 5799999999999999999999999998765331 23444321 1000 00011367899999999888776
Q ss_pred --HHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 80 --RKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 80 --~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
++|+++|+++...+......+.+++||+||+|++|||.....
T Consensus 79 ~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 79 GGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred HHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 599999999876543332223377999999999999996433
No 30
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.78 E-value=3.8e-18 Score=107.80 Aligned_cols=104 Identities=32% Similarity=0.544 Sum_probs=76.6
Q ss_pred eeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcCCCC--------CCCC--CCCCCCCceEEEEeCCHHHHH
Q 036243 10 LNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPDRM--------PSIG--KIINPKDNHISFQCENMATVE 79 (146)
Q Consensus 10 i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~~~~--------~~~~--~~~~~~~~hl~~~v~d~~~~~ 79 (146)
|+|++|.|+|++++++||+++||++........ ....|+..... +... .....+..|++|.|+|+++++
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 79 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL-FPGAWLYAGDGPQLHLIEEDPPDALPEGPGRDDHIAFRVDDLDAFR 79 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC-CCceEEEeCCCcEEEEEecCCCccccCCCcccceEEEEeCCHHHHH
Confidence 689999999999999999999999887653311 12234331110 0000 012456789999999999999
Q ss_pred HHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEE
Q 036243 80 RKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEI 116 (146)
Q Consensus 80 ~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel 116 (146)
++++++|+++...+... .+.+.+++.||+|++|||
T Consensus 80 ~~l~~~g~~~~~~~~~~--~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 80 ARLKAAGVPYTESDVPG--DGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHcCCCcccccCCC--CCccEEEEECCCCCEEeC
Confidence 99999999988776432 234889999999999996
No 31
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.78 E-value=2.8e-18 Score=115.57 Aligned_cols=114 Identities=12% Similarity=0.103 Sum_probs=81.0
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCC-----CcCCeEEcCCCCCCC----CCCCCCCCceEEEEeCCHH--
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSF-----DFHGAWKYPDRMPSI----GKIINPKDNHISFQCENMA-- 76 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~-----~~~~~~l~~~~~~~~----~~~~~~~~~hl~~~v~d~~-- 76 (146)
.+|+|++|.|+|++++++||+++|||++....... .....|+........ ......+..|++|.|+|.+
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~g~~Hiaf~V~d~~~l 87 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEGPGPKRIHHLMLEVTSLDDV 87 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcCCCCceeEEEEEEcCCHHHH
Confidence 67999999999999999999999999986542210 112234432111111 1112367889999998655
Q ss_pred -HHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 77 -TVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 77 -~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
+++++|+++|+++...+...+..+.+++|+.||+|++|||.....
T Consensus 88 ~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 88 GRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred HHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 689999999999987654443234488999999999999986443
No 32
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.78 E-value=6.7e-18 Score=108.49 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=80.6
Q ss_pred cceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcCCCCC----CCCCCCCCCCceEEEEe---CCHHHHH
Q 036243 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPDRMP----SIGKIINPKDNHISFQC---ENMATVE 79 (146)
Q Consensus 7 ~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~hl~~~v---~d~~~~~ 79 (146)
+.+|+|+.|.|+|++++++||+++|||+.....+ +..|+...... .......++..|++|.+ +++++++
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 76 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIVYLRATGSEHHILRLRRSDRNRLDVVSFSVASRADVDALA 76 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEEEEECCCCccEEEEeccCCCCCCceEEEEeCCHHHHHHHH
Confidence 4689999999999999999999999999875543 23344311110 00112334678999999 4789999
Q ss_pred HHHHhcCceEeecceec-CCeeeEEEEEECCCCCeEEEEeeC
Q 036243 80 RKLTEMKIEYVKSRVEE-GGIYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 80 ~~l~~~G~~~~~~~~~~-~g~~~~~~~~~DPdG~~iel~~~~ 120 (146)
++++++|+++..++... .+++.+.++|.||+||.|||+...
T Consensus 77 ~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 77 RQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred HHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 99999999987665322 123448899999999999999754
No 33
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.78 E-value=4.2e-18 Score=109.75 Aligned_cols=109 Identities=22% Similarity=0.273 Sum_probs=79.2
Q ss_pred ccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcCC--CCC---CCCCCCCCCCceEEEEeC---CHHH
Q 036243 6 SLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPD--RMP---SIGKIINPKDNHISFQCE---NMAT 77 (146)
Q Consensus 6 ~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~~--~~~---~~~~~~~~~~~hl~~~v~---d~~~ 77 (146)
++.++.|+.|.|+|++++++||+++||+++....+ ...|+... ... .......++..|++|.+. ++++
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~hi~~~v~~~~dv~~ 76 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DRIYLRGLEEFIHHSLVLTKAPVAGLGHIAFRVRSEEDLDK 76 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----CeEEEEecCCCceEEEEEeeCCCCceeEEEEECCCHHHHHH
Confidence 46789999999999999999999999999876543 12233210 000 000123457899999994 8889
Q ss_pred HHHHHHhcCceEeecce-ecCCeeeEEEEEECCCCCeEEEEee
Q 036243 78 VERKLTEMKIEYVKSRV-EEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 78 ~~~~l~~~G~~~~~~~~-~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
++++++++|+++...+. ...+ ..+++|+.|||||+||++..
T Consensus 77 ~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 77 AEAFFQELGLPTEWVEAGEEPG-QGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred HHHHHHHcCCCcccccCCcCCC-CccEEEEECCCCCEEEEEec
Confidence 99999999998876532 2222 23789999999999999864
No 34
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=1e-17 Score=108.30 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=77.1
Q ss_pred eeEEEEEcCCHHHHHHHHHHhhCCeeeecCCC-----CCcCCeEE--cCC-----CCCCC----CCCCCCCCceEEEEeC
Q 036243 10 LNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGS-----FDFHGAWK--YPD-----RMPSI----GKIINPKDNHISFQCE 73 (146)
Q Consensus 10 i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~-----~~~~~~~l--~~~-----~~~~~----~~~~~~~~~hl~~~v~ 73 (146)
+.|+.|.|+|++++.+||+++|||+.....+. ...++..+ ... ..+.. .....++..|++|.|+
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHESGDYGELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIAFVTD 80 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCCCcEEEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEEEEcC
Confidence 47999999999999999999999988653221 11111111 100 00000 0112345579999999
Q ss_pred CHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 74 NMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
|+++++++++++|+++..++...+ ++.+.++++|||||.||++++
T Consensus 81 di~~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 81 DVAAAFARAVEAGAVLVSEPKEKP-WGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred CHHHHHHHHHHcCCEeccCCccCC-CCcEEEEEECCCCCEEEEecC
Confidence 999999999999999987764443 445889999999999999863
No 35
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.78 E-value=3.9e-18 Score=108.49 Aligned_cols=106 Identities=24% Similarity=0.445 Sum_probs=76.7
Q ss_pred EEEEEcCCHHHHHHHHHHhhCCeeeecCCC---CCcCCeEEcCCCCCCCCCCCCCCCceEEEEeC--CHHHHHHHHHhcC
Q 036243 12 HFSLVCRSVEKSLDFYQNVIGFLPIRRPGS---FDFHGAWKYPDRMPSIGKIINPKDNHISFQCE--NMATVERKLTEMK 86 (146)
Q Consensus 12 hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~hl~~~v~--d~~~~~~~l~~~G 86 (146)
||.|.|+|++++++||+++||++.....+. +..++.|+.-...+... ....+..|++|.|+ ++++++++++++|
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~hiaf~v~~~d~~~~~~~l~~~G 79 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSSKEAYFELAGLWICLMEEDSLQ-GPERTYTHIAFQIQSEEFDEYTERLKALG 79 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccCceeEEEecCeEEEeccCCCcC-CCCCCccEEEEEcCHHHHHHHHHHHHHcC
Confidence 899999999999999999999998766541 22334554311111111 12346789999995 8999999999999
Q ss_pred ceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 87 IEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 87 ~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
+++........ .+++.+|+.|||||+|||...
T Consensus 80 ~~~~~~~~~~~-~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 80 VEMKPERPRVQ-GEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred CccCCCccccC-CCceEEEEECCCCCEEEEEeC
Confidence 99875432222 234899999999999999863
No 36
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=2.2e-17 Score=106.84 Aligned_cols=112 Identities=23% Similarity=0.338 Sum_probs=78.9
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCC---CCcCC--eEEc--CCCCCCCCCCCCCCCceEEEEeC---CHHH
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGS---FDFHG--AWKY--PDRMPSIGKIINPKDNHISFQCE---NMAT 77 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~---~~~~~--~~l~--~~~~~~~~~~~~~~~~hl~~~v~---d~~~ 77 (146)
.+|+|+.|.|+|++++.+||+++|||++....+. +..++ .++. .............+..|++|.|+ ++++
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~~~~~v~~ 80 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTDSTAVLGTGGKRPLLVLEEDPDAPPAPPGATGLYHFAILLPSRADLAA 80 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCCCEEEEecCCCeEEEEEEeCCCCCcccCCCCcEEEEEEECCCHHHHHH
Confidence 4789999999999999999999999999877441 11111 2221 11000011123456789999997 5889
Q ss_pred HHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCC
Q 036243 78 VERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVL 122 (146)
Q Consensus 78 ~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~ 122 (146)
++++++++|+++... ...+ . .+.+||.|||||+|||....+.
T Consensus 81 ~~~~l~~~g~~~~~~-~~~~-~-~~~~~~~DPdG~~iEi~~~~~~ 122 (125)
T cd07255 81 ALRRLIELGIPLVGA-SDHL-V-SEALYLSDPEGNGIEIYADRPR 122 (125)
T ss_pred HHHHHHHcCCceecc-cccc-c-eeEEEEECCCCCEEEEEEecCc
Confidence 999999999987543 2222 2 2789999999999999975443
No 37
>PRK10291 glyoxalase I; Provisional
Probab=99.77 E-value=1e-17 Score=109.34 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=74.7
Q ss_pred EEEcCCHHHHHHHHHHhhCCeeeecCCCC--CcCCeEEcCC------------CCCCCCCCCCCCCceEEEEeCCHHHHH
Q 036243 14 SLVCRSVEKSLDFYQNVIGFLPIRRPGSF--DFHGAWKYPD------------RMPSIGKIINPKDNHISFQCENMATVE 79 (146)
Q Consensus 14 ~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~--~~~~~~l~~~------------~~~~~~~~~~~~~~hl~~~v~d~~~~~ 79 (146)
+|.|+|+++|++||+++|||++....... .+...++... ..+........+..|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 47899999999999999999987643311 1122233110 000011122346789999999999999
Q ss_pred HHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeC
Q 036243 80 RKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 80 ~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 120 (146)
++|+++|+++...+.+..+...+.++|.|||||.|||++..
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~ 121 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK 121 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence 99999999988655443322236788999999999999855
No 38
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.77 E-value=5.4e-18 Score=109.51 Aligned_cols=106 Identities=25% Similarity=0.434 Sum_probs=77.4
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCC---CCcCCeEEcCCCCCCCCCCCCCCCceEEEEe--CCHHHHHHHHH
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGS---FDFHGAWKYPDRMPSIGKIINPKDNHISFQC--ENMATVERKLT 83 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~hl~~~v--~d~~~~~~~l~ 83 (146)
+|+|+.|.|+|++++.+||+++||+++....+. +..++.++.-. ..... ...++..|++|.+ +++++++++++
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~~hi~f~v~~~dl~~~~~~l~ 78 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWDKGAYLEAGDLWLCLS-VDANV-GPAKDYTHYAFSVSEEDFASLKEKLR 78 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecCCceEEecCCEEEEEe-cCCCC-CCCCCeeeEEEEeCHHHHHHHHHHHH
Confidence 589999999999999999999999998765431 22233333110 11110 2245678999998 48999999999
Q ss_pred hcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeC
Q 036243 84 EMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 84 ~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 120 (146)
++|+++...+. ..+ +.+||.|||||.|||.+..
T Consensus 79 ~~G~~~~~~~~-~~~---~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 79 QAGVKEWKENT-SEG---DSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HcCCcccCCCC-CCc---cEEEEECCCCCEEEEEeCC
Confidence 99998865432 222 7899999999999999744
No 39
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.77 E-value=1e-17 Score=113.20 Aligned_cols=111 Identities=20% Similarity=0.353 Sum_probs=78.0
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCC---C-CcC---CeEEc--CCCCCCCCCCCCCCCceEEEEeCC---HH
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGS---F-DFH---GAWKY--PDRMPSIGKIINPKDNHISFQCEN---MA 76 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~---~-~~~---~~~l~--~~~~~~~~~~~~~~~~hl~~~v~d---~~ 76 (146)
+|+||+|.|+|++++++||+++|||++...... + ..+ +..+. .............+..|++|.|+| ++
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~d~~dvd 80 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEGDRVRLEEGGGGPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVPDDEELE 80 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeCCEEEEEecCCCCCCEEEEEeCCCCCCCcccCCceEEEEEECCCHHHHH
Confidence 589999999999999999999999998765431 1 111 22221 100000000123567899999997 89
Q ss_pred HHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCC
Q 036243 77 TVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVL 122 (146)
Q Consensus 77 ~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~ 122 (146)
+++++|+++|+.+.. +.... ..+++||.|||||.|||+...+.
T Consensus 81 ~~~~~L~~~Gv~~~~-~~~~~--~~~s~yf~DPdG~~iEl~~~~~~ 123 (157)
T cd08347 81 AWKERLEALGLPVSG-IVDRF--YFKSLYFREPGGILFEIATDGPG 123 (157)
T ss_pred HHHHHHHHCCCCccc-ccccc--cEEEEEEECCCCcEEEEEECCCC
Confidence 999999999997643 22222 23889999999999999997653
No 40
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.77 E-value=1.2e-17 Score=111.38 Aligned_cols=111 Identities=22% Similarity=0.304 Sum_probs=79.3
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcCCCCCCC---CCCCCCCCceEEEEeCCHHHHH---HH
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPDRMPSI---GKIINPKDNHISFQCENMATVE---RK 81 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~hl~~~v~d~~~~~---~~ 81 (146)
.+++|+.|.|+|+++|++||+++|||++...... ...|+........ .....++..|++|.|+|++++. ++
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~---~~~~l~~~~~~~~~~l~~~~~~~~~hiaf~v~d~~~l~~~~~~ 79 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLGD---QMAFLRCNSDHHSIAIARGPHPSLNHVAFEMPSIDEVMRGIGR 79 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeCC---eEEEEECCCCcceEEEccCCCCceEEEEEECCCHHHHHHHHHH
Confidence 4899999999999999999999999998644320 1234432111100 0122457889999999888775 89
Q ss_pred HHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 82 LTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 82 l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
|+++|+++...+........+++||.||+||.|||++...
T Consensus 80 l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 80 MIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred HHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 9999999876653322222367899999999999998644
No 41
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.77 E-value=1.4e-17 Score=106.32 Aligned_cols=107 Identities=18% Similarity=0.325 Sum_probs=80.6
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcCC-CCCC---CCCCCCCCCceEEEEeC---CHHHHHH
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPD-RMPS---IGKIINPKDNHISFQCE---NMATVER 80 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~~-~~~~---~~~~~~~~~~hl~~~v~---d~~~~~~ 80 (146)
.+++|+.|.|+|++++++||+++||+++....+ ...|+... .... .......+..|++|.|+ +++++.+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~v~~~~~ 76 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GSVYLRCSEDDHHSLVLTEGDEPGVDALGFEVASEEDLEALAA 76 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC----CeEEEecCCCCcEEEEEEeCCCCCceeEEEEcCCHHHHHHHHH
Confidence 368999999999999999999999999887654 23444321 0000 00122357889999997 6889999
Q ss_pred HHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 81 KLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 81 ~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
+++++|+++...+....+ +.+.++|.||+||+||++..
T Consensus 77 ~l~~~g~~~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 77 HLEAAGVAPEEASDPEPG-VGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred HHHHcCCceEEcCccCCC-CceEEEEECCCCCEEEEEEc
Confidence 999999999877643332 34889999999999999974
No 42
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.76 E-value=2.6e-17 Score=121.72 Aligned_cols=115 Identities=19% Similarity=0.278 Sum_probs=81.0
Q ss_pred CCccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCC--c-CCeEEcCCC-CCCCC--CCCCCC-CceEEEEeCC--
Q 036243 4 PLSLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFD--F-HGAWKYPDR-MPSIG--KIINPK-DNHISFQCEN-- 74 (146)
Q Consensus 4 ~m~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~--~-~~~~l~~~~-~~~~~--~~~~~~-~~hl~~~v~d-- 74 (146)
.|.+.+|+||+|.|+|++++++||+++|||++........ . ...|+.... ..... .....+ ..|+||.|+|
T Consensus 140 ~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Hiaf~v~~~~ 219 (303)
T TIGR03211 140 GVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKAHDIAFVGDPEPGKLHHVSFFLDSWE 219 (303)
T ss_pred CcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCCcccceecCCCCCceEEEEEEcCCHH
Confidence 4567899999999999999999999999999765422111 0 234553211 11110 112234 8899999996
Q ss_pred -HHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 75 -MATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 75 -~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
+++++++|+++|+++..++...+....+++||.|||||+||+++
T Consensus 220 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 220 DVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred HHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 44567899999999877765443223379999999999999984
No 43
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.76 E-value=4.8e-17 Score=105.66 Aligned_cols=111 Identities=24% Similarity=0.401 Sum_probs=79.1
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhh---CCeeeecCCC---CC--cCCeEEc---CCCCCCC-CCCCCCCCceEEEEeC---
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVI---GFLPIRRPGS---FD--FHGAWKY---PDRMPSI-GKIINPKDNHISFQCE--- 73 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~L---g~~~~~~~~~---~~--~~~~~l~---~~~~~~~-~~~~~~~~~hl~~~v~--- 73 (146)
+|+||+|.|+|++++.+||+++| ||+.....+. +. .++..+. +...... ......+..|++|.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~hia~~v~~~~ 80 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWEDGRSWRAGDGGTYLVLQQADGESAGRHDRRNPGLHHLAFRAPSRE 80 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeeccCceEEecCCceEEEEEecccCCCcccccCCcCeeEEEEEcCCHH
Confidence 58999999999999999999999 9998775321 11 1222221 1111000 0123456789999997
Q ss_pred CHHHHHHHHHhcCceEeecceec--CCeeeEEEEEECCCCCeEEEEee
Q 036243 74 NMATVERKLTEMKIEYVKSRVEE--GGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~~~~~--~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
|+++++++|+++|+.+...+... ...+.+.+|+.|||||+|||+.+
T Consensus 81 d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 81 AVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred HHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 58899999999999998876532 22245899999999999999863
No 44
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.76 E-value=5.3e-18 Score=109.97 Aligned_cols=109 Identities=13% Similarity=0.171 Sum_probs=74.2
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhhCCeeeecCC--CCC-------cCCeEEc--CC-CCCCC-C---CCCCCCCceEEEEe
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPG--SFD-------FHGAWKY--PD-RMPSI-G---KIINPKDNHISFQC 72 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~--~~~-------~~~~~l~--~~-~~~~~-~---~~~~~~~~hl~~~v 72 (146)
+|+|++|.|+|++++++||+++|||+...... ... .++..+. .. ..... . .....+..|+||.|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v 80 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEV 80 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEc
Confidence 58999999999999999999999999875421 011 1111111 10 00000 0 01234677999999
Q ss_pred CCHHHHHHHHHhcCceEeec-ceecCCeeeEEEEE--ECCCCCeEEEEe
Q 036243 73 ENMATVERKLTEMKIEYVKS-RVEEGGIYVDQVFF--HDPDGSMIEICN 118 (146)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~-~~~~~g~~~~~~~~--~DPdG~~iel~~ 118 (146)
+|+++++++|+++|+++..+ +.... ++.+..++ +||||+.||+++
T Consensus 81 ~di~~~~~~l~~~G~~~~~~~~~~~~-~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 81 DDIEAALETLKEKGVRLIDEEPRIGA-GGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCHHHHHHHHHHCCCcccCCCCccCC-CCCEEEEecccccCcEEEEecC
Confidence 99999999999999998764 33222 23355566 799999999975
No 45
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.75 E-value=4.8e-17 Score=105.05 Aligned_cols=108 Identities=20% Similarity=0.313 Sum_probs=73.4
Q ss_pred EEEEEcCCHHHHHHHHHHhhCCeeeecCCC---CCcCCeEEc--CCCCC-----C-CCCCCCCCCceEEE--EeCCHHHH
Q 036243 12 HFSLVCRSVEKSLDFYQNVIGFLPIRRPGS---FDFHGAWKY--PDRMP-----S-IGKIINPKDNHISF--QCENMATV 78 (146)
Q Consensus 12 hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~---~~~~~~~l~--~~~~~-----~-~~~~~~~~~~hl~~--~v~d~~~~ 78 (146)
|++|.|+|+++|++||+++||+++....+. +...+..+. ..... . .......+..|++| .++|++++
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~dv~~~ 81 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSETWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSEEEFDAL 81 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccCCcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeHHHHHHH
Confidence 999999999999999999999998654331 222222221 10000 0 00012234567655 55799999
Q ss_pred HHHHHhcCceEeecceec-CC--eeeEEEEEECCCCCeEEEEee
Q 036243 79 ERKLTEMKIEYVKSRVEE-GG--IYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 79 ~~~l~~~G~~~~~~~~~~-~g--~~~~~~~~~DPdG~~iel~~~ 119 (146)
+++|+++|+++..++... .+ .+.+.+||.|||||.|||.++
T Consensus 82 ~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 82 AERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred HHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 999999999998765432 11 234889999999999999864
No 46
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.75 E-value=2.4e-17 Score=106.37 Aligned_cols=106 Identities=20% Similarity=0.329 Sum_probs=74.5
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCc-CC--eEEcC--------------CCCCCCCCCCCCCCceEEEE
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDF-HG--AWKYP--------------DRMPSIGKIINPKDNHISFQ 71 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~-~~--~~l~~--------------~~~~~~~~~~~~~~~hl~~~ 71 (146)
+|+|++|.|.|++++++||+++|||+.......... .. .++.. ............+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 579999999999999999999999998765431110 01 11110 00000011223457899999
Q ss_pred eC---CHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEE
Q 036243 72 CE---NMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEIC 117 (146)
Q Consensus 72 v~---d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 117 (146)
|+ ++++++++++++|+++...+. .. +.+.+||+||+||+|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~-~~--~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVD-HF--GERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEe-ec--ceEEEEEECCCCCEEEeC
Confidence 98 569999999999998875433 23 348999999999999985
No 47
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=4.7e-17 Score=103.79 Aligned_cols=105 Identities=18% Similarity=0.289 Sum_probs=75.9
Q ss_pred EEEEEcCCHHHHHHHHHHhhCCeeeecCCC-CCc---------C-CeEEc--CC-CCCCCCCCCCCCCceEEEEeCCHHH
Q 036243 12 HFSLVCRSVEKSLDFYQNVIGFLPIRRPGS-FDF---------H-GAWKY--PD-RMPSIGKIINPKDNHISFQCENMAT 77 (146)
Q Consensus 12 hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~-~~~---------~-~~~l~--~~-~~~~~~~~~~~~~~hl~~~v~d~~~ 77 (146)
||+|.|+|++++++||+++|||++...... .+. + +..+. .. ...........+..|++|.|+|+++
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~ 80 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAPPANPAAMSGLQPGGTPGLVLATDDIDA 80 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeCCCCccccccccCCCceEEEEEehHHHH
Confidence 899999999999999999999998876431 110 0 11111 10 0000001234567799999999999
Q ss_pred HHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 78 VERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 78 ~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
++++++++|+++...+.... +++.+++.||+||.|||++
T Consensus 81 ~~~~l~~~g~~~~~~~~~~~--~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 81 TYEELKARGVEFSEEPREMP--YGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHhCCCEEeeccccCC--CceEEEEECCCCCEEEEeC
Confidence 99999999999987763332 2389999999999999974
No 48
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=2.7e-17 Score=109.23 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=80.4
Q ss_pred eEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcCC--CCC---CCCCCCCCCCceEEEEeCCH---HHHHHHH
Q 036243 11 NHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPD--RMP---SIGKIINPKDNHISFQCENM---ATVERKL 82 (146)
Q Consensus 11 ~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~~--~~~---~~~~~~~~~~~hl~~~v~d~---~~~~~~l 82 (146)
.||.|.|+|++++++||+++|||++....+. ...|+... ... .......++..|++|.|+|. ++++++|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~---~~~~l~~~~~~~~h~~~~~~~~~~gl~Hiaf~v~~~~~v~~~~~~l 77 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED---RIVFMRCHPNPFHHTFAVGPASSSHFHHVNFMVTDIDDIGKALYRI 77 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC---EEEEEEcCCCCCcceeeeccCCCCceEEEEEECCCHHHHHHHHHHH
Confidence 4999999999999999999999998765431 22344321 111 11113456899999999855 5679999
Q ss_pred HhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCCC
Q 036243 83 TEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVLP 123 (146)
Q Consensus 83 ~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~~ 123 (146)
+++|+++..++......+.+++||.||+|+.||+.......
T Consensus 78 ~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~~ 118 (141)
T cd07258 78 KAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEEF 118 (141)
T ss_pred HHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCccee
Confidence 99999988776554423448899999999999998865543
No 49
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.75 E-value=4.3e-17 Score=104.64 Aligned_cols=106 Identities=16% Similarity=0.246 Sum_probs=75.6
Q ss_pred EEEEEcCCHHHHHHHHHHhhCCeeeecCCC---CCcCC--eEEc---CCC--CCCCCCCCCCCCceEEEEeCCHHHHHHH
Q 036243 12 HFSLVCRSVEKSLDFYQNVIGFLPIRRPGS---FDFHG--AWKY---PDR--MPSIGKIINPKDNHISFQCENMATVERK 81 (146)
Q Consensus 12 hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~---~~~~~--~~l~---~~~--~~~~~~~~~~~~~hl~~~v~d~~~~~~~ 81 (146)
+..|.|+|+++|++||+++|||+.....+. +..++ ..+. ... .+.......+...|++|.|+|+++++++
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~did~~~~~ 83 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSDWYVSLRSPDGGVELAFMLPGHETVPAAQYQFQGQGLILNFEVDDVDAEYER 83 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccCcEEEEecCCCceEEEEccCCCCCCcchhcccCCceEEEEEEECCHHHHHHH
Confidence 678999999999999999999998865431 11111 1221 111 1100112233446999999999999999
Q ss_pred HHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 82 LTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 82 l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
++++|+++..++...+ ++.+.++++|||||+|||++
T Consensus 84 l~~~G~~~~~~~~~~~-~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 84 LKAEGLPIVLPLRDEP-WGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHhcCCCeeeccccCC-CcceEEEEECCCCCEEEEEC
Confidence 9999999887765443 45589999999999999985
No 50
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.75 E-value=5.2e-17 Score=106.31 Aligned_cols=111 Identities=23% Similarity=0.278 Sum_probs=79.1
Q ss_pred eEEEEEcCCHHHHHHHHHHhhCCeeeecCCCC-CcCCeEEcCCCCCC----CCCCCCCCCceEEEEeCCHH---HHHHHH
Q 036243 11 NHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSF-DFHGAWKYPDRMPS----IGKIINPKDNHISFQCENMA---TVERKL 82 (146)
Q Consensus 11 ~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~-~~~~~~l~~~~~~~----~~~~~~~~~~hl~~~v~d~~---~~~~~l 82 (146)
+||+|.|+|+++|++||+++||+++....... .....|+....... ......++..|++|.|+|++ ++++++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~hl~~~v~d~~~~~~~~~~l 80 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFPGPERPGLHHVAFEVESLDDILRAADRL 80 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEcCCCCCCeeEEEEEcCCHHHHHHHHHHH
Confidence 59999999999999999999999986543311 12334554221111 00012568899999999765 788999
Q ss_pred HhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 83 TEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 83 ~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
+++|+++...+...+..+.++++|.|||||+|||++..+
T Consensus 81 ~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 81 AANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 999999887654433223478899999999999997544
No 51
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.74 E-value=6.1e-17 Score=103.22 Aligned_cols=103 Identities=20% Similarity=0.383 Sum_probs=71.4
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCC-----cCCeEEcCCCCCCCCCCCCCCCceEEE--EeCCHHHHHH
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFD-----FHGAWKYPDRMPSIGKIINPKDNHISF--QCENMATVER 80 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~hl~~--~v~d~~~~~~ 80 (146)
.+|+|++|.|+|+++|.+||+ .|||+.....+... ....|+. +.. ....+..|++| .++|++++++
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~d~~~~~~ 73 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEGDGLELRTAGNDHRWAR---LLE---GARKRLAYLSFGIFEDDFAAFAR 73 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeecCceEEEecCCCceEEE---eec---CCCCceeeEEEEeEhhhHHHHHH
Confidence 368999999999999999998 69999876543110 0111221 000 11223445444 5579999999
Q ss_pred HHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeC
Q 036243 81 KLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 81 ~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 120 (146)
+++++|+++..++. .. +.+.+||.|||||.|||....
T Consensus 74 ~l~~~Gi~~~~~~~-~~--~~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 74 HLEAAGVALAAAPP-GA--DPDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred HHHHcCCceecCCC-cC--CCCEEEEECCCCCEEEEecCC
Confidence 99999999876642 22 226799999999999998643
No 52
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.73 E-value=1.6e-16 Score=101.02 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=73.8
Q ss_pred EEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcC-CC----CCCCC-CCCCCCCceEEEEeCCHHHHHHHHHhc
Q 036243 12 HFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYP-DR----MPSIG-KIINPKDNHISFQCENMATVERKLTEM 85 (146)
Q Consensus 12 hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~-~~----~~~~~-~~~~~~~~hl~~~v~d~~~~~~~l~~~ 85 (146)
+..|.|+|++++++||+++|||+.....+. ..++.. .. +.... ........|++|.|+|+++++++|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~d~~~~~~~l~~~ 78 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDHGW----IATFASPQNMTVQVSLATEGGTATVVPDLSIEVDDVDAALARAVAA 78 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcCCc----eEEEeecCCCCcEEEEecCCCCCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 357899999999999999999998643221 011110 00 00000 012334679999999999999999999
Q ss_pred CceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 86 KIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 86 G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
|+++..++.... ++.+.+++.||+||+|||++.
T Consensus 79 G~~~~~~~~~~~-~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 79 GFAIVYGPTDEP-WGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred CCeEecCCccCC-CceEEEEEECCCCCEEEEEEc
Confidence 999887765433 455889999999999999974
No 53
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.73 E-value=4.6e-17 Score=102.65 Aligned_cols=99 Identities=24% Similarity=0.378 Sum_probs=72.8
Q ss_pred EEcCCHHHHHHHHHHhhCCeeeecCCC---CCcCCe------EEcCCCCCCCCCCCCCCCceEEEEeCCHHHHHHHHHhc
Q 036243 15 LVCRSVEKSLDFYQNVIGFLPIRRPGS---FDFHGA------WKYPDRMPSIGKIINPKDNHISFQCENMATVERKLTEM 85 (146)
Q Consensus 15 l~v~D~~~a~~Fy~~~Lg~~~~~~~~~---~~~~~~------~l~~~~~~~~~~~~~~~~~hl~~~v~d~~~~~~~l~~~ 85 (146)
|.|+|++++++||+++|||++....+. +..+.. .+.. .+ .......+..|++|.|+|+++++++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~v~dv~~~~~~l~~~ 77 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDPDYVDFSLGFRFHDGVIEFLQ--FP-DPPGPPGGGFHLCFEVEDVDALYERLKEL 77 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEETSEEEEEETEEEEEEEEEEEE--EE-SSSSSSSSEEEEEEEESHHHHHHHHHHHT
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCCCeEEEEeccchhhhhHHHcc--CC-ccccCCCceeEEEEEEcCHHHHHHHHHHC
Confidence 689999999999999999999985441 111110 1100 01 11134567899999999999999999999
Q ss_pred CceEeecceecCCeeeEEEEEECCCCCeEEEE
Q 036243 86 KIEYVKSRVEEGGIYVDQVFFHDPDGSMIEIC 117 (146)
Q Consensus 86 G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 117 (146)
|+++..++.... ++.+.+++.|||||+|||+
T Consensus 78 G~~~~~~~~~~~-~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 78 GAEIVTEPRDDP-WGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp TSEEEEEEEEET-TSEEEEEEE-TTS-EEEEE
T ss_pred CCeEeeCCEEcC-CCeEEEEEECCCCCEEEeC
Confidence 999888776644 2449999999999999986
No 54
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.73 E-value=7e-18 Score=108.85 Aligned_cols=108 Identities=24% Similarity=0.373 Sum_probs=74.7
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCC----CCcCCeEEcCCC---------CCCCCCCCC----CCCceEEEE
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGS----FDFHGAWKYPDR---------MPSIGKIIN----PKDNHISFQ 71 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~----~~~~~~~l~~~~---------~~~~~~~~~----~~~~hl~~~ 71 (146)
+|+||+|.|+|++++++||+++|||++...... ......++.... .+....... .+..|+++.
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFL 80 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEE
Confidence 689999999999999999999999999886541 011111111100 000000000 145677777
Q ss_pred eC---CHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEE
Q 036243 72 CE---NMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEI 116 (146)
Q Consensus 72 v~---d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel 116 (146)
+. |+++++++|+++|+++...+..........+|++||+||.|||
T Consensus 81 ~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 81 AFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp ESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred eccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 75 7778899999999999988766554344667899999999997
No 55
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.73 E-value=1e-16 Score=103.35 Aligned_cols=106 Identities=19% Similarity=0.277 Sum_probs=73.8
Q ss_pred eeEEEEEcCCHHHHHHHHHHhhCCeeeecCCC-----CCcC-CeEEc--C-CCC---CCCCCCCCCCCceEEEEeC---C
Q 036243 10 LNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGS-----FDFH-GAWKY--P-DRM---PSIGKIINPKDNHISFQCE---N 74 (146)
Q Consensus 10 i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~-----~~~~-~~~l~--~-~~~---~~~~~~~~~~~~hl~~~v~---d 74 (146)
++||+|.|+|+++|++||+. |||++....+. +..+ +..+. . ... ........++..|++|.+. |
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d 79 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADDEPHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCETPAE 79 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCCCCcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcCCHHH
Confidence 58999999999999999975 99987654321 1111 22221 0 000 0000012345678999875 8
Q ss_pred HHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEE
Q 036243 75 MATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEIC 117 (146)
Q Consensus 75 ~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 117 (146)
+++++++|+++|+++..++...+ ++.+.++|+|||||+|||+
T Consensus 80 vd~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 80 VDALYAELVGAGYPGHKEPWDAP-WGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred HHHHHHHHHHCCCCcCCCCccCC-CCCEEEEEECCCCCEEEEe
Confidence 99999999999998887665433 4558899999999999997
No 56
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.73 E-value=1.8e-16 Score=116.78 Aligned_cols=123 Identities=22% Similarity=0.356 Sum_probs=83.1
Q ss_pred CCccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCC--CcCCeEEcCCC-CCCC--CCCCCCCCceEEEEeCC---H
Q 036243 4 PLSLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSF--DFHGAWKYPDR-MPSI--GKIINPKDNHISFQCEN---M 75 (146)
Q Consensus 4 ~m~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~--~~~~~~l~~~~-~~~~--~~~~~~~~~hl~~~v~d---~ 75 (146)
.+.+.+|+|++|.|+|+++|++||+++||+++....... .....|+.... .... .....++.+|+||.|+| +
T Consensus 131 ~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hiaf~v~d~~~v 210 (294)
T TIGR02295 131 GVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVHDIALTNGNGPRLHHIAYWVHDPLNI 210 (294)
T ss_pred CccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcCceEeecCCCCceeeEEEEcCCHHHH
Confidence 456789999999999999999999999999986543211 11123442111 1110 01234678999999997 4
Q ss_pred HHHHHHHHhcCce--EeecceecCCeeeEEEEEECCCCCeEEEEeeCCCCccc
Q 036243 76 ATVERKLTEMKIE--YVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVLPVVP 126 (146)
Q Consensus 76 ~~~~~~l~~~G~~--~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~~~~~ 126 (146)
+++.++|+++|++ +...+...+....+++|+.||+||+||+++.+..-..|
T Consensus 211 ~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~~~~~~~ 263 (294)
T TIGR02295 211 IKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGDYLTGDP 263 (294)
T ss_pred HHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEeccceecCC
Confidence 5568999999987 54444332212336799999999999999865433333
No 57
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.72 E-value=1.8e-16 Score=103.83 Aligned_cols=108 Identities=24% Similarity=0.334 Sum_probs=75.8
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcCC--C-----C-CCCC---CCCCCCCceEEEEeCCHH-
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPD--R-----M-PSIG---KIINPKDNHISFQCENMA- 76 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~~--~-----~-~~~~---~~~~~~~~hl~~~v~d~~- 76 (146)
+|+|+.|.|+|++++++||+++||+++....+. ..-.++... . + .... .....+..|++|.|+|++
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~~~~ 78 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--GGLVFLSRDPDEHHQIALITGRPAAPPPGPAGLNHIAFEVDSLDD 78 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--CcEEEEEecCCCceEEEEEecCCCCCCCCCCCceEEEEEeCCHHH
Confidence 589999999999999999999999998765431 011122110 0 0 0000 022346789999998765
Q ss_pred --HHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 77 --TVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 77 --~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
+++++|.++|+++..... .++ .+.+++.||+||+|||++..+
T Consensus 79 v~~~~~~l~~~G~~~~~~~~-~~~--~~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 79 LRDLYERLRAAGITPVWPVD-HGN--AWSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred HHHHHHHHHHCCCCccccCC-CCc--eeEEEEECCCCCEEEEEEcCC
Confidence 578999999998776532 222 388999999999999997544
No 58
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=1.7e-16 Score=102.50 Aligned_cols=106 Identities=17% Similarity=0.255 Sum_probs=73.5
Q ss_pred eeEEEEEcCCHHHHHHHHHHh---hCCeeeecC-CC---CCcC--C--eEEcCCCCCCCCCCCCCCCceEEEEeCC---H
Q 036243 10 LNHFSLVCRSVEKSLDFYQNV---IGFLPIRRP-GS---FDFH--G--AWKYPDRMPSIGKIINPKDNHISFQCEN---M 75 (146)
Q Consensus 10 i~hv~l~v~D~~~a~~Fy~~~---Lg~~~~~~~-~~---~~~~--~--~~l~~~~~~~~~~~~~~~~~hl~~~v~d---~ 75 (146)
|+|+.|.|+|+++|++||+++ ||+...... +. +... + .++.... .... ....+..|++|.|++ +
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~~~~~~~hi~f~v~~~~~v 78 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGPGAVGYGKGGGGPDFWVTKPF-DGEP-ATAGNGTHVAFAAPSREAV 78 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecCCceeEeccCCCCceEEEeccc-cCCC-CCCCCceEEEEECCCHHHH
Confidence 589999999999999999998 588876554 21 1111 1 1121100 0000 122346799999986 7
Q ss_pred HHHHHHHHhcCceEeecceecC--CeeeEEEEEECCCCCeEEEE
Q 036243 76 ATVERKLTEMKIEYVKSRVEEG--GIYVDQVFFHDPDGSMIEIC 117 (146)
Q Consensus 76 ~~~~~~l~~~G~~~~~~~~~~~--g~~~~~~~~~DPdG~~iel~ 117 (146)
++++++++++|+.+...+.... +.+.+.+||.|||||.|||+
T Consensus 79 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 79 DAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred HHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 8889999999999877664432 23346899999999999997
No 59
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.72 E-value=4.4e-16 Score=100.47 Aligned_cols=106 Identities=10% Similarity=0.117 Sum_probs=76.0
Q ss_pred EEEEcCCHHHHHHHHHHhhCCeeeecCC--C-------CCcCCeEEc--CCCCCCC---CCCCCCCCceEEEEeCCHHHH
Q 036243 13 FSLVCRSVEKSLDFYQNVIGFLPIRRPG--S-------FDFHGAWKY--PDRMPSI---GKIINPKDNHISFQCENMATV 78 (146)
Q Consensus 13 v~l~v~D~~~a~~Fy~~~Lg~~~~~~~~--~-------~~~~~~~l~--~~~~~~~---~~~~~~~~~hl~~~v~d~~~~ 78 (146)
-.|.|+|++++++||+++||+++..... . +..++..+. ....... .....++..|++|.|+|++++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~~ 82 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDAH 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECCHHHH
Confidence 4689999999999999999999886531 1 111221111 1000000 012335678999999999999
Q ss_pred HHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 79 ERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 79 ~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
+++++++|+++..++...+ ++.+.++++|||||+|+|.++
T Consensus 83 ~~~l~~~G~~v~~~~~~~~-~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 83 YERARAAGAEILREPTDTP-YGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred HHHHHHCCCEEeeCccccC-CCcEEEEEECCCCCEEEEecC
Confidence 9999999999998765543 445889999999999999864
No 60
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=3.4e-16 Score=100.60 Aligned_cols=108 Identities=19% Similarity=0.283 Sum_probs=75.7
Q ss_pred eeEEEEEcCCHHHHHHHHHHhhCCeeeecC-CC---CCcCC-eEE--c-CCCCC-CC---CCCCCCCCceEEEEeC--CH
Q 036243 10 LNHFSLVCRSVEKSLDFYQNVIGFLPIRRP-GS---FDFHG-AWK--Y-PDRMP-SI---GKIINPKDNHISFQCE--NM 75 (146)
Q Consensus 10 i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~-~~---~~~~~-~~l--~-~~~~~-~~---~~~~~~~~~hl~~~v~--d~ 75 (146)
|.|+.|.|+|++++++||+++|||++.... +. +..++ ..+ . ..... .. ......+..|++|.++ |+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dl 80 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKEDRRLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAIPAEEL 80 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecCCCceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEcCHHHH
Confidence 468999999999999999999999988742 21 11122 111 1 11100 00 0022346789999984 89
Q ss_pred HHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 76 ATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 76 ~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
+++++++.++|+++...+... .+++.++|.|||||+||++++
T Consensus 81 ~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 81 AEWEAHLEAKGVAIESEVQWP--RGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred HHHHHHHHhcCCceeccccCC--CCeeEEEEECCCCCEEEEecC
Confidence 999999999999887654322 234889999999999999873
No 61
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=4.4e-16 Score=100.83 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=72.7
Q ss_pred eEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCC-----c-CCeEEc--CC----CC-CCCCC-CCCCCCceEEEEeC---
Q 036243 11 NHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFD-----F-HGAWKY--PD----RM-PSIGK-IINPKDNHISFQCE--- 73 (146)
Q Consensus 11 ~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~-----~-~~~~l~--~~----~~-~~~~~-~~~~~~~hl~~~v~--- 73 (146)
.++.|.|+|+++|++||++ |||+......... . ++.++. .. .. ..... ....+..|++|.|+
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v~~~~ 80 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEKAACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSADSRE 80 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCCCeEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeCCCHH
Confidence 6899999999999999987 9998764322111 1 122221 10 00 00000 12345679999998
Q ss_pred CHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 74 NMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
++++++++++++|+++..++...++ .+.+||.|||||+|||+.
T Consensus 81 ~vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 81 EVDELVEKALAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred HHHHHHHHHHHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 5888999999999999877655443 378899999999999984
No 62
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.71 E-value=2.5e-16 Score=115.70 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=80.1
Q ss_pred cceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCC--CC---CcCCeEEcCCCCCC----CCCCCCCCCceEEEEeCCHHH
Q 036243 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPG--SF---DFHGAWKYPDRMPS----IGKIINPKDNHISFQCENMAT 77 (146)
Q Consensus 7 ~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~--~~---~~~~~~l~~~~~~~----~~~~~~~~~~hl~~~v~d~~~ 77 (146)
..+|+||+|.|+|++++.+||+++|||++..... .. .+...|+....... ......++.+|++|.|+|.++
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Hiaf~v~d~~~ 219 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAAGPSEKRLNHLMLEVDTLDD 219 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEecCCCCCceEEEEEEcCCHHH
Confidence 4689999999999999999999999999865421 01 11234553221111 111235678999999997776
Q ss_pred ---HHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeC
Q 036243 78 ---VERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 78 ---~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 120 (146)
+.++|+++|+ ....+...+..+.+++|+.||+|++||+....
T Consensus 220 v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~~ 264 (286)
T TIGR03213 220 VGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWGA 264 (286)
T ss_pred HHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecCc
Confidence 7999999999 44444333323458999999999999998744
No 63
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.71 E-value=4.4e-16 Score=100.16 Aligned_cols=106 Identities=20% Similarity=0.302 Sum_probs=74.2
Q ss_pred eEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcCC-----CCCCCCCCCCCCCceEEEEeCC---HHHHHHHH
Q 036243 11 NHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPD-----RMPSIGKIINPKDNHISFQCEN---MATVERKL 82 (146)
Q Consensus 11 ~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~hl~~~v~d---~~~~~~~l 82 (146)
.|+.|.|+|+++|.+||+++||++.....+.. ..|.... .+........++..|++|.+++ ++++++++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~f~v~~~~dl~~~~~~l 79 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRDDY---AKFLLEDPRLNFVLNERPGAPGGGLNHLGVQVDSAEEVAEAKARA 79 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccCCe---eEEEecCCceEEEEecCCCCCCCCeeEEEEEeCCHHHHHHHHHHH
Confidence 59999999999999999999999876553310 1111100 0000100111578899999986 78899999
Q ss_pred HhcCceEeecceecC-CeeeEEEEEECCCCCeEEEEee
Q 036243 83 TEMKIEYVKSRVEEG-GIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 83 ~~~G~~~~~~~~~~~-g~~~~~~~~~DPdG~~iel~~~ 119 (146)
.++|+++...+.... +...+.+|+.||+||.|||+..
T Consensus 80 ~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 80 EAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred HHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 999999876643222 1124789999999999999973
No 64
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=6.3e-16 Score=98.54 Aligned_cols=104 Identities=13% Similarity=0.217 Sum_probs=73.2
Q ss_pred EEEEcCCHHHHHHHHHHhhCCeeeecCCC---CCc-CCeEEc--CCCCCCCCCCCCCCCceEEEEeCC---HHHHHHHHH
Q 036243 13 FSLVCRSVEKSLDFYQNVIGFLPIRRPGS---FDF-HGAWKY--PDRMPSIGKIINPKDNHISFQCEN---MATVERKLT 83 (146)
Q Consensus 13 v~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~---~~~-~~~~l~--~~~~~~~~~~~~~~~~hl~~~v~d---~~~~~~~l~ 83 (146)
+.|.|+|+++|++||+++||+++....+. +.. ++..+. ............++..|++|.+++ +++++++++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 81 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSPTFALFVLGSGVKLGLWSRHTVEPASDATGGGSELAFMVDDGAAVDALYAEWQ 81 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCCceEEEEeCCCcEEEEeeccccCCCCCCCCCceEEEEEcCCHHHHHHHHHHHH
Confidence 67999999999999999999997764331 111 112211 100000111234577899999975 888999999
Q ss_pred hcCceEeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 84 EMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 84 ~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
++|+++..++...+ ++ +.++|.|||||.|||++
T Consensus 82 ~~g~~v~~~~~~~~-~g-~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 82 AKGVKIIQEPTEMD-FG-YTFVALDPDGHRLRVFA 114 (114)
T ss_pred HCCCeEecCccccC-Cc-cEEEEECCCCCEEEeeC
Confidence 99999988765443 33 78899999999999973
No 65
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=3.2e-16 Score=100.23 Aligned_cols=101 Identities=13% Similarity=0.230 Sum_probs=70.1
Q ss_pred EEEEcCCHHHHHHHHHHhhCCeeeecCCCC---CcCCeEEcCCCCCCCCCCCCCCCceEEEEeCCHHHHHHHHHhcCceE
Q 036243 13 FSLVCRSVEKSLDFYQNVIGFLPIRRPGSF---DFHGAWKYPDRMPSIGKIINPKDNHISFQCENMATVERKLTEMKIEY 89 (146)
Q Consensus 13 v~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~ 89 (146)
..|+|+|+++|++||++ |||++....+.. ..++..+. +............+++|.|+|+++++++|+++|+.+
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~~~~~l~~~~~~l~---l~~~~~~~~~~~~~~~~~v~did~~~~~l~~~G~~~ 80 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWENDNLAYFRLGNCAFY---LQDYYVKDWAENSMLHLEVDDLEAYYEHIKALGLPK 80 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCCCEEEEEcCCEEEE---eecCCCcccccCCEEEEEECCHHHHHHHHHHcCCcc
Confidence 46899999999999988 999998765421 12222221 100000112345689999999999999999999874
Q ss_pred ee-----cceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 90 VK-----SRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 90 ~~-----~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
.. ++.. ..++++.++|.|||||+|+|.+
T Consensus 81 ~~~~~~~~~~~-~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 81 KFPGVKLPPIT-QPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred cccceecCccc-cCCCcEEEEEECCCccEEEeeC
Confidence 32 2222 1245699999999999999864
No 66
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.69 E-value=5.6e-16 Score=98.12 Aligned_cols=104 Identities=17% Similarity=0.232 Sum_probs=72.5
Q ss_pred EEEcCCHHHHHHHHHHhhCCeeeecCCCC-----CcCCeEEcCCCCCCCCCCCCCCCceEEEEeCCHHHHHHHHHhcCce
Q 036243 14 SLVCRSVEKSLDFYQNVIGFLPIRRPGSF-----DFHGAWKYPDRMPSIGKIINPKDNHISFQCENMATVERKLTEMKIE 88 (146)
Q Consensus 14 ~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~hl~~~v~d~~~~~~~l~~~G~~ 88 (146)
.|.|+|++++++||+++|||++....+.. ..++..+.-...........++..|++|.++|++++.++++++|+.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 82 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHPEPGYAFLSRGGAQLMLSEHDGDEPVPLGRGGSVYIEVEDVDALYAELKAKGAD 82 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcCCCcEEEEEeCCEEEEEeccCCCCCCCCCCcEEEEEEeCCHHHHHHHHHHcCCc
Confidence 68999999999999999999987765311 1122222100011110012346679999999999999999999998
Q ss_pred -EeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 89 -YVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 89 -~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
+..++.... ++.+.+++.||+|+.|||++
T Consensus 83 ~~~~~~~~~~-~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 83 LIVYPPEDQP-WGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred ceecCccCCC-cccEEEEEECCCCCEEEecC
Confidence 554543332 34589999999999999975
No 67
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.69 E-value=3.4e-16 Score=101.26 Aligned_cols=108 Identities=19% Similarity=0.318 Sum_probs=75.7
Q ss_pred eeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCC---CcCCeEEc----------CCCCCCC----CCCCCCCCceEEEEe
Q 036243 10 LNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSF---DFHGAWKY----------PDRMPSI----GKIINPKDNHISFQC 72 (146)
Q Consensus 10 i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~---~~~~~~l~----------~~~~~~~----~~~~~~~~~hl~~~v 72 (146)
|+||.|.|+|++++.+||+++|||+........ .....++. +...... .....++..|++|.|
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v 80 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEV 80 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEe
Confidence 589999999999999999999999987654321 11112221 1110000 012356789999999
Q ss_pred CCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCC---CCeEEEEe
Q 036243 73 ENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPD---GSMIEICN 118 (146)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPd---G~~iel~~ 118 (146)
+|+++++++++++|+++...+......+ +.+++.||+ |++|||++
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~g-~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 81 DDIDAALARLKAQGVRLLQEGPRIGAGG-KRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCHHHHHHHHHHCCCeeeccCCCccCCC-CEEEEEecCCCceEEEEecC
Confidence 9999999999999999988765222222 556666665 99999975
No 68
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.69 E-value=7.5e-16 Score=99.27 Aligned_cols=104 Identities=12% Similarity=0.119 Sum_probs=71.2
Q ss_pred EEEEEcCCHHHHHHHHHHhhCCeeeecCCC-C---CcCCeEEcCCCCCCCCCCCCCCCceEEEEeCCHHHHHHHHHhcCc
Q 036243 12 HFSLVCRSVEKSLDFYQNVIGFLPIRRPGS-F---DFHGAWKYPDRMPSIGKIINPKDNHISFQCENMATVERKLTEMKI 87 (146)
Q Consensus 12 hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~-~---~~~~~~l~~~~~~~~~~~~~~~~~hl~~~v~d~~~~~~~l~~~G~ 87 (146)
...|.|+|+++|++||++ |||+.....+. + ..++..+.- .............|++|.|+|+++++++|+++|+
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~~~~~~~~~~~~l~l--~~~~~~~~~~~~~~~~~~v~dvd~~~~~l~~~G~ 81 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAAGYMILRRGDLELHF--FAHPDLDPATSPFGCCLRLPDVAALHAEFRAAGL 81 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCCCEEEEEcCCEEEEE--EecCcCCCCCCcceEEEEeCCHHHHHHHHHHhCc
Confidence 467999999999999999 99998776541 1 112222110 0000001223356899999999999999999999
Q ss_pred eEe-------ecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 88 EYV-------KSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 88 ~~~-------~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
++. ..+... .++.+.++|.|||||+|||.++
T Consensus 82 ~~~~~~~~~~~~~~~~-~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 82 PETGSGIPRITPPEDQ-PWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred cccccCCCcccCCcCC-CCceeEEEEECCCCCEEEeecC
Confidence 853 122111 2355899999999999999874
No 69
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=1.4e-15 Score=99.07 Aligned_cols=101 Identities=15% Similarity=0.266 Sum_probs=69.1
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCC---------cCCeE----Ec--CCCC---------CCCCCCCCCC
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFD---------FHGAW----KY--PDRM---------PSIGKIINPK 64 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~---------~~~~~----l~--~~~~---------~~~~~~~~~~ 64 (146)
++.|++|.|+|+++|++||+++|||++..+.+..+ .++.| +. +... .... ....+
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~-~~~~g 80 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIG-DYELG 80 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCC-CCCCC
Confidence 68999999999999999999999999876542111 11221 21 0000 0000 11222
Q ss_pred CceEEEEeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 65 DNHISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 65 ~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
..|++|.|++. ++.++|+++|+.+...+. ..+++.||||+.|||+.
T Consensus 81 ~~~~hlav~~~-d~~~~l~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 81 NDFLGITIHSK-QAVSNAKKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred CCEEEEEEECH-HHHHHHHHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 34778888776 566999999998886542 26799999999999984
No 70
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.68 E-value=2e-15 Score=96.94 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=75.5
Q ss_pred EEEEcCCHHHHHHHHHHhhCCeeeecCCC---------CCcCCeEEc-CCCCCC--CCCCCCCCCceEEEEeCCHHHHHH
Q 036243 13 FSLVCRSVEKSLDFYQNVIGFLPIRRPGS---------FDFHGAWKY-PDRMPS--IGKIINPKDNHISFQCENMATVER 80 (146)
Q Consensus 13 v~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~---------~~~~~~~l~-~~~~~~--~~~~~~~~~~hl~~~v~d~~~~~~ 80 (146)
..|.|+|++++++||+++||+++...... +..++..+. ....+. .......+..|++|.|+|++++++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~ 84 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVDATFA 84 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccCCCCCCCCceEEEEEEeCCHHHHHH
Confidence 46899999999999999999998765321 111222221 011111 011234567899999999999999
Q ss_pred HHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 81 KLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 81 ~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
++.++|+++..++.... ++.+.++++|||||+|+|.+
T Consensus 85 ~l~~~G~~~~~~~~~~~-~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 85 RAVAAGATSVMPPADQF-WGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHCCCeEecCccccc-ccceEEEEECCCCCEEEEec
Confidence 99999999987765332 45589999999999999975
No 71
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.68 E-value=1.2e-15 Score=112.30 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=80.8
Q ss_pred ccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcC--CC-CCC--CCCCCCCCCceEEEEeC---CHHH
Q 036243 6 SLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYP--DR-MPS--IGKIINPKDNHISFQCE---NMAT 77 (146)
Q Consensus 6 ~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~--~~-~~~--~~~~~~~~~~hl~~~v~---d~~~ 77 (146)
++.+|+|+.|.|+|++++++||+++|||++....+ ...++.. .. ... ......++..|++|.|+ |+++
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~~~~~~hiaf~v~~~~dl~~ 76 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK----EYIYLRGIEEFQHHSLVLTKAPSAALSYIGFRVSKEEDLDK 76 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC----CeEEEeccCcCCceEEEeeeCCCcCccEEEEEeCCHHHHHH
Confidence 36789999999999999999999999999876543 1233321 00 000 00123457889999997 7889
Q ss_pred HHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 78 VERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 78 ~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
++++|+++|+++...+... ..+.+||.|||||.|||+....
T Consensus 77 ~~~~l~~~Gv~v~~~~~~~---~~~~~~~~DPdG~~iEl~~~~~ 117 (294)
T TIGR02295 77 AADFFQKLGHPVRLVRDGG---QPEALRVEDPFGYPIEFYFEME 117 (294)
T ss_pred HHHHHHhcCCcEEeecCCC---CceEEEEECCCCCEEEEEEchh
Confidence 9999999999987654222 2389999999999999998543
No 72
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.67 E-value=1.4e-15 Score=112.58 Aligned_cols=110 Identities=20% Similarity=0.299 Sum_probs=80.3
Q ss_pred cceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcC-CCC---CC-CCCCCCCCCceEEEEeC---CHHHH
Q 036243 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYP-DRM---PS-IGKIINPKDNHISFQCE---NMATV 78 (146)
Q Consensus 7 ~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~-~~~---~~-~~~~~~~~~~hl~~~v~---d~~~~ 78 (146)
+.+|+|+.|.|+|++++++||+++|||++....+. ..++.. ... .. .......+..|++|.|+ +++++
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~g~~hiaf~v~~~~dl~~~ 77 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ----RVYLKAWDEWDHYSVILTEADTAGLDHMAFKVESEADLERL 77 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc----eEEEEeccccccceEeeccCCCCceeEEEEEeCCHHHHHHH
Confidence 56899999999999999999999999998765441 122210 000 00 00123457889999997 78899
Q ss_pred HHHHHhcCceEeeccee-cCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 79 ERKLTEMKIEYVKSRVE-EGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 79 ~~~l~~~G~~~~~~~~~-~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
+++|+++|+++...+.. ..+ ..+.+||.|||||.|||+....
T Consensus 78 ~~~l~~~G~~~~~~~~~~~~~-~g~~~~~~DPdG~~iEl~~~~~ 120 (303)
T TIGR03211 78 VKRLEAYGVGTGWIPAGELPG-VGRRVRFTLPSGHTMELYAEKE 120 (303)
T ss_pred HHHHHHcCCCeeeccCCCCCC-cceEEEEECCCCCEEEEEEccc
Confidence 99999999998765431 122 2378999999999999998655
No 73
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.64 E-value=3.2e-15 Score=109.84 Aligned_cols=111 Identities=14% Similarity=0.209 Sum_probs=78.5
Q ss_pred cceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcCCCCCC---CCCCCCCCCceEEEEeCC---HHHHHH
Q 036243 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYPDRMPS---IGKIINPKDNHISFQCEN---MATVER 80 (146)
Q Consensus 7 ~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~hl~~~v~d---~~~~~~ 80 (146)
+.+|+|++|.|+|+++|++||+++|||+.....+. +..|+....-.. .......+..|++|.|++ ++++.+
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~V~~~~~l~~~~~ 77 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGEN---DALYLRLDSRAHRIAVHPGESDDLAYAGWEVADEAGLDQVKE 77 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCCC---ceEEEEcCCCceEEEEEECCcCCeeeEeeeeCCHHHHHHHHH
Confidence 46899999999999999999999999987654321 112322110000 001223467899999997 888999
Q ss_pred HHHhcCceEeecceec--CCeeeEEEEEECCCCCeEEEEeeC
Q 036243 81 KLTEMKIEYVKSRVEE--GGIYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 81 ~l~~~G~~~~~~~~~~--~g~~~~~~~~~DPdG~~iel~~~~ 120 (146)
+|+++|+++...+... .....+.++|.|||||.|||+...
T Consensus 78 ~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~ 119 (286)
T TIGR03213 78 KLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGA 119 (286)
T ss_pred HHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcc
Confidence 9999999987654321 111347899999999999999743
No 74
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=4.3e-15 Score=95.23 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=72.8
Q ss_pred EEEEcCCHHHHHHHHHHhhCCeeeecC-CC---CCcCCeEEc--C-CCCC----CCCCCCCCCCceEEEEe---CCHHHH
Q 036243 13 FSLVCRSVEKSLDFYQNVIGFLPIRRP-GS---FDFHGAWKY--P-DRMP----SIGKIINPKDNHISFQC---ENMATV 78 (146)
Q Consensus 13 v~l~v~D~~~a~~Fy~~~Lg~~~~~~~-~~---~~~~~~~l~--~-~~~~----~~~~~~~~~~~hl~~~v---~d~~~~ 78 (146)
|.|.|+|+++|.+||+++||+++.... +. +..++.++. . .... ........+..|++|.+ +|++++
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 81 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSNDGVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEEEVDAV 81 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCCCceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHHHHHHH
Confidence 689999999999999999999987662 21 222444432 1 1110 00001223455677665 589999
Q ss_pred HHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 79 ERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 79 ~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
++++++.|+++..++...+ ++++.+++.||+||+|||..
T Consensus 82 ~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 82 LARAAAAGATIVKPPQDVF-WGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHhCCCEEecCCccCC-CCceEEEEECCCCCEEEEee
Confidence 9999999999987654333 34589999999999999975
No 75
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.63 E-value=2.4e-14 Score=92.31 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=84.3
Q ss_pred CccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEE-cCC-----CCCCCC-CCCCCCCceEEEEeCCHHH
Q 036243 5 LSLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWK-YPD-----RMPSIG-KIINPKDNHISFQCENMAT 77 (146)
Q Consensus 5 m~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l-~~~-----~~~~~~-~~~~~~~~hl~~~v~d~~~ 77 (146)
++...+.|..|+|.|++++++||+++||+++....+.....-..+ ..+ .+.... .........+.|.|+|+++
T Consensus 5 ~~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~~~~gG~l~~~~~~~p~~~~~~iy~~v~did~ 84 (127)
T COG3324 5 GEKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADGAGAGGGLMARPGSPPGGGGWVIYFAVDDIDA 84 (127)
T ss_pred ccCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCCccccceeccCCcCCCCCCCEEEEEecCChHH
Confidence 456789999999999999999999999999987744211110111 011 111111 0112556678889999999
Q ss_pred HHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 78 VERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 78 ~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
..+++.++|.+++.++.+.++ +++.+.+.||+||+|.|.+.
T Consensus 85 ~l~rv~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~ 125 (127)
T COG3324 85 TLERVVAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSP 125 (127)
T ss_pred HHHHHHhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeec
Confidence 999999999999999887775 34999999999999999874
No 76
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.62 E-value=7.3e-15 Score=91.76 Aligned_cols=104 Identities=23% Similarity=0.388 Sum_probs=74.4
Q ss_pred EEEEEcCCHHHHHHHHHHhhCCeeeecCCC-------CCcCCeEEcCCCCCCCC-CCCCCCCceEEEEeCCHHHHHHHHH
Q 036243 12 HFSLVCRSVEKSLDFYQNVIGFLPIRRPGS-------FDFHGAWKYPDRMPSIG-KIINPKDNHISFQCENMATVERKLT 83 (146)
Q Consensus 12 hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~-------~~~~~~~l~~~~~~~~~-~~~~~~~~hl~~~v~d~~~~~~~l~ 83 (146)
|++|.|+|++++.+||+++||++....... +..++..+.-...+... .....+..|++|.|+|++++.++|+
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 80 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLGGTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDAAYERLK 80 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecCCceEEEecCCCCCCcccCCCeeEEEEECCCHHHHHHHHH
Confidence 899999999999999999999998876531 11111111100000000 0134567899999999999999999
Q ss_pred hcCceEeecceecCCeeeEEEEEECCCCCeEEE
Q 036243 84 EMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEI 116 (146)
Q Consensus 84 ~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel 116 (146)
++|+.+...+... ..+.+.+++.||+|+.|||
T Consensus 81 ~~g~~~~~~~~~~-~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 81 AAGVEVLGEPREE-PWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HcCCcccCCCcCC-CCCcEEEEEECCCCcEEeC
Confidence 9999888776412 1234999999999999986
No 77
>PLN02300 lactoylglutathione lyase
Probab=99.62 E-value=1.4e-14 Score=106.56 Aligned_cols=116 Identities=13% Similarity=0.152 Sum_probs=85.8
Q ss_pred ccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCC--CCCcCCeEEcC--C----------CCCCCCCCCCCCCceEEEE
Q 036243 6 SLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPG--SFDFHGAWKYP--D----------RMPSIGKIINPKDNHISFQ 71 (146)
Q Consensus 6 ~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~--~~~~~~~~l~~--~----------~~~~~~~~~~~~~~hl~~~ 71 (146)
+..++.|+.|.|+|++++.+||+++|||++..... ...+...++.. . ..........++..|++|.
T Consensus 151 ~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~ 230 (286)
T PLN02300 151 TPEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIG 230 (286)
T ss_pred CCCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEe
Confidence 34678999999999999999999999999875422 11222222210 0 0000001234677899999
Q ss_pred eCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 72 CENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 72 v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
|+|+++++++++++|+++..+|...++.+.+.++|.||||+.++|++...
T Consensus 231 v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~ 280 (286)
T PLN02300 231 TDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNID 280 (286)
T ss_pred cCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccch
Confidence 99999999999999999998877666544478899999999999998665
No 78
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=2.1e-13 Score=89.71 Aligned_cols=115 Identities=22% Similarity=0.292 Sum_probs=77.4
Q ss_pred CCccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCC-----------C----------CCcCCeEEc----------C-
Q 036243 4 PLSLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPG-----------S----------FDFHGAWKY----------P- 51 (146)
Q Consensus 4 ~m~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~-----------~----------~~~~~~~l~----------~- 51 (146)
++....+.|..+.++|+.+|+.||.+++|+.+..... . .....+|.. +
T Consensus 17 ~~~t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~ 96 (170)
T KOG2944|consen 17 STPTYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNW 96 (170)
T ss_pred CCchhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCC
Confidence 3344456788888888888888888888877655321 0 001113432 0
Q ss_pred --CCCCCCC---CCCCC-CCceEEEEeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeC
Q 036243 52 --DRMPSIG---KIINP-KDNHISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 52 --~~~~~~~---~~~~~-~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 120 (146)
...+... .+..+ |+.|+||.|+|+++++.+|+++|+++...+ ..|.....+++.||||+.|||..+.
T Consensus 97 Gtes~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~--~dGk~K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 97 GTESPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKL--KDGKMKPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred CCCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecC--CCccccceeEEECCCCCeEEEeecC
Confidence 0111011 13344 899999999999999999999999976654 3344347899999999999998753
No 79
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.50 E-value=2.7e-13 Score=85.84 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=77.5
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcC------CeE---Ec----CCCCCCCC-CCCCCCCceEEEEeC-
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFH------GAW---KY----PDRMPSIG-KIINPKDNHISFQCE- 73 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~------~~~---l~----~~~~~~~~-~~~~~~~~hl~~~v~- 73 (146)
..-.|+|+|+|+++|++||+. |||++.......... ..+ |. ........ ........-+++.+.
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls~~s 81 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDEDAACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLSAGS 81 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCcccccceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEeccCc
Confidence 345689999999999999997 999998875522211 111 11 11111111 134455667888876
Q ss_pred --CHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 74 --NMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 74 --d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
+++++.+++.+.|.+...++.+.+.+ +...|.|||||.||++...+
T Consensus 82 ~eevd~~v~ka~eaGGk~~~~~~d~gfM--Yg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 82 REEVDELVDKALEAGGKPANEPQDEGFM--YGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred HHHHHHHHHHHHHcCCCCCCCccccccc--cceeeeCCCCCeEEEEEeCH
Confidence 78888999999999997777666544 88899999999999997543
No 80
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.47 E-value=8.5e-13 Score=82.46 Aligned_cols=115 Identities=20% Similarity=0.304 Sum_probs=80.4
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhhCCeeeecCC---CCCcCCeEE-c---CCCCC-CCCC----CCCCCCceEEEEeCCHH
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPG---SFDFHGAWK-Y---PDRMP-SIGK----IINPKDNHISFQCENMA 76 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~---~~~~~~~~l-~---~~~~~-~~~~----~~~~~~~hl~~~v~d~~ 76 (146)
.+-|+++.|+|+++++.||.++||++.-...+ .+++-|..+ . +.... ..+. ...+....+.+.++|+-
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvVl~~edW~ 83 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTDTWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGVVLPVEDWF 83 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccceEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceEEEEHHHHH
Confidence 46799999999999999999999998877655 244333322 1 11100 0000 11222334556777999
Q ss_pred HHHHHHHhcCceEeecceec-CC--eeeEEEEEECCCCCeEEEEeeCCCC
Q 036243 77 TVERKLTEMKIEYVKSRVEE-GG--IYVDQVFFHDPDGSMIEICNCDVLP 123 (146)
Q Consensus 77 ~~~~~l~~~G~~~~~~~~~~-~g--~~~~~~~~~DPdG~~iel~~~~~~~ 123 (146)
++.++|+++|+.+..+|... .| ..++.+++.||.||.+|+-......
T Consensus 84 alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~~e 133 (138)
T COG3565 84 ALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRDQE 133 (138)
T ss_pred HHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccchh
Confidence 99999999999998887654 23 2569999999999999998766543
No 81
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.40 E-value=5.8e-12 Score=89.86 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=82.5
Q ss_pred cceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCC---CcCCe-EEcCCCC--CCCCCCCCCCCceEEEEeC---CHHH
Q 036243 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSF---DFHGA-WKYPDRM--PSIGKIINPKDNHISFQCE---NMAT 77 (146)
Q Consensus 7 ~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~---~~~~~-~l~~~~~--~~~~~~~~~~~~hl~~~v~---d~~~ 77 (146)
...+..+.|.|+|++++..||+++||+++..+.+.. ..++. .+.-... .........|..|.+|.++ ++..
T Consensus 8 ~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~~v~L~vgg~~LL~L~q~~~a~~~~~~~aGLyH~AfLlP~r~~L~~ 87 (265)
T COG2514 8 PTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDGSVTLGVGGTPLLTLEQFPDARRPPPRAAGLYHTAFLLPTREDLAR 87 (265)
T ss_pred CcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCceEEEeeCCEEEEEEEeCCCCCCCCccccceeeeeeecCCHHHHHH
Confidence 367899999999999999999999999999886622 23333 2221111 1111146679999999998 6777
Q ss_pred HHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCC
Q 036243 78 VERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVL 122 (146)
Q Consensus 78 ~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~ 122 (146)
++.++...|+.+... .++. ..-.+||.||+||-||+..-.+.
T Consensus 88 ~l~hl~~~~~~l~Ga-~DH~--vSEAlYl~DPEGNGIEiYaDrp~ 129 (265)
T COG2514 88 VLNHLAEEGIPLVGA-SDHL--VSEALYLEDPEGNGIEIYADRPR 129 (265)
T ss_pred HHHHHHhcCCccccc-Ccch--hheeeeecCCCCCeEEEEecCCh
Confidence 788999999988622 3333 22788999999999999975443
No 82
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.37 E-value=1.2e-12 Score=83.04 Aligned_cols=83 Identities=20% Similarity=0.313 Sum_probs=58.7
Q ss_pred eEEEEEcCCHHHHHHHHHHhhCCeeeecCC--CCCcCCeEEc------------CCCCCCCCCCCCCCCceEEEEeCCHH
Q 036243 11 NHFSLVCRSVEKSLDFYQNVIGFLPIRRPG--SFDFHGAWKY------------PDRMPSIGKIINPKDNHISFQCENMA 76 (146)
Q Consensus 11 ~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~--~~~~~~~~l~------------~~~~~~~~~~~~~~~~hl~~~v~d~~ 76 (146)
+||+|.|+|+++|++||+++||+....... .......++. +..-.........|.+|+||.|+|++
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D~d 80 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPLDRGGGGIHHIAFEVDDLD 80 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHHHHTSSEEEEEEEEESHHH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCcccccCCCCEEEEEEEeCCHH
Confidence 699999999999999999999998665422 1111112221 11111111135678999999999999
Q ss_pred HHHHHHHhcCceEeecc
Q 036243 77 TVERKLTEMKIEYVKSR 93 (146)
Q Consensus 77 ~~~~~l~~~G~~~~~~~ 93 (146)
+..++|+++|+++...+
T Consensus 81 ~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 81 AAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHTTECEEECE
T ss_pred HHHHHHHHCCCEEcccC
Confidence 99999999999988764
No 83
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.34 E-value=1.2e-11 Score=86.01 Aligned_cols=115 Identities=16% Similarity=0.191 Sum_probs=78.2
Q ss_pred ceeeEEEEEcC--CHHHHHHHHHHhhCCeeeecCCCCC-cCC---eEEc------------CCCCCCCC-------CCCC
Q 036243 8 KSLNHFSLVCR--SVEKSLDFYQNVIGFLPIRRPGSFD-FHG---AWKY------------PDRMPSIG-------KIIN 62 (146)
Q Consensus 8 ~~i~hv~l~v~--D~~~a~~Fy~~~Lg~~~~~~~~~~~-~~~---~~l~------------~~~~~~~~-------~~~~ 62 (146)
.+|+||++.|+ |+++|++||+++|||+.....+..+ ..+ ..+. +....... ...+
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~G 81 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYGG 81 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhCC
Confidence 57999999999 9999999999999998876543111 011 1111 11100000 0235
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcCceEeecceecCCe------------------eeEEEEEECCCCCeEEEEeeCCC
Q 036243 63 PKDNHISFQCENMATVERKLTEMKIEYVKSRVEEGGI------------------YVDQVFFHDPDGSMIEICNCDVL 122 (146)
Q Consensus 63 ~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~------------------~~~~~~~~DPdG~~iel~~~~~~ 122 (146)
+|..|+||.|+|+++++++|+++|+.+...|...... .....+=.|..|+++.+.+.+-.
T Consensus 82 ~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~~yy~~l~~r~~~~~~~~~~~~l~~~~il~d~~~~~~llq~ft~~~~ 159 (191)
T cd07250 82 AGVQHIALATDDIFATVAALRARGVEFLPIPDNYYDDLEARLDGILVDEDLDTLRELGILVDRDDGGYLLQIFTKPVF 159 (191)
T ss_pred CceeEEEEECCCHHHHHHHHHHcCCeeccCchhhHHHHHHhccccccchhHHHHHHCCEEEECCCCCEEEEEeccCCC
Confidence 7889999999999999999999999998776432110 11234556778999999986554
No 84
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.27 E-value=4.6e-11 Score=90.42 Aligned_cols=120 Identities=17% Similarity=0.254 Sum_probs=82.1
Q ss_pred CCCccceeeEEEEEcC--CHHHHHHHHHHhhCCeeeecCCC-CCcCCe---EEc------------CCCCCCCC------
Q 036243 3 NPLSLKSLNHFSLVCR--SVEKSLDFYQNVIGFLPIRRPGS-FDFHGA---WKY------------PDRMPSIG------ 58 (146)
Q Consensus 3 ~~m~~~~i~hv~l~v~--D~~~a~~Fy~~~Lg~~~~~~~~~-~~~~~~---~l~------------~~~~~~~~------ 58 (146)
.+|.+.+|+||++.|+ |+++++.||+++|||+.....+. ....+. .+. +.......
T Consensus 152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl 231 (353)
T TIGR01263 152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFL 231 (353)
T ss_pred CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHH
Confidence 4567889999999999 99999999999999988764331 001111 111 10000000
Q ss_pred C-CCCCCCceEEEEeCCHHHHHHHHHhcCceEeecceecC-------C----------eeeEEEEEECCCCCeEEEEeeC
Q 036243 59 K-IINPKDNHISFQCENMATVERKLTEMKIEYVKSRVEEG-------G----------IYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 59 ~-~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~~-------g----------~~~~~~~~~DPdG~~iel~~~~ 120 (146)
. ..++|..|+||.|+|+++.+++|+++|+.+...|.... + .....++=.|.+|+++++.+.+
T Consensus 232 ~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~~yY~~l~~r~~~~~~~~~~~l~~~~iL~D~d~~g~llqift~~ 311 (353)
T TIGR01263 232 EFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPDTYYDLLGERLGGHVKEDLDTLRELNILIDGDEDGYLLQIFTKP 311 (353)
T ss_pred HHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCHHHHHHHHHHhcccccchHHHHHHCCEEEecCCCceEEEEeccC
Confidence 1 23578899999999999999999999999887653210 0 0112345578899999999865
Q ss_pred CC
Q 036243 121 VL 122 (146)
Q Consensus 121 ~~ 122 (146)
-.
T Consensus 312 ~~ 313 (353)
T TIGR01263 312 LQ 313 (353)
T ss_pred CC
Confidence 54
No 85
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.24 E-value=3.2e-11 Score=77.32 Aligned_cols=108 Identities=20% Similarity=0.300 Sum_probs=71.4
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcC---CeEEc--CC--------C--------CCCCCC---CCC-
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFH---GAWKY--PD--------R--------MPSIGK---IIN- 62 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~---~~~l~--~~--------~--------~~~~~~---~~~- 62 (146)
.+++|++|.|+|+++|++||+++||++........... ...+. .. . ...... ...
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 36899999999999999999999999998865421111 00110 00 0 000000 111
Q ss_pred --CCCceEEEEeCC---HHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 63 --PKDNHISFQCEN---MATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 63 --~~~~hl~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
.+..|+++.+++ .......+...|..+..... .. ....+|+.||||++||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~--~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GR--GGVHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CC--cceEEEEECCCCcEEEeeC
Confidence 247899999997 66667777777887765543 21 1138999999999999974
No 86
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.22 E-value=2.6e-10 Score=74.33 Aligned_cols=102 Identities=18% Similarity=0.116 Sum_probs=66.7
Q ss_pred EEEEc-CCHHHHHHHHHHhhCCeeeecCCC-------------------CCcCCeEEc-CCCCCCCCCCCCCCCceEEEE
Q 036243 13 FSLVC-RSVEKSLDFYQNVIGFLPIRRPGS-------------------FDFHGAWKY-PDRMPSIGKIINPKDNHISFQ 71 (146)
Q Consensus 13 v~l~v-~D~~~a~~Fy~~~Lg~~~~~~~~~-------------------~~~~~~~l~-~~~~~~~~~~~~~~~~hl~~~ 71 (146)
..|.+ .|.++|++||+++||+++...... +..++..+. .+..+... .......++++.
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~-~~~~~~~~l~i~ 81 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFP-FTFGNGISLSVE 81 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCC-CCCCCCEEEEEE
Confidence 35667 899999999999999998875320 011111111 11111111 123446689999
Q ss_pred eCC---HHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEE
Q 036243 72 CEN---MATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEIC 117 (146)
Q Consensus 72 v~d---~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 117 (146)
+++ +++++++|++.| ++..++... .++.+.+.++||+|+.|+|.
T Consensus 82 ~~~~e~v~~~~~~l~~~g-~~~~~~~~~-~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 82 CDSEEEADRLFEALSEGG-TVLMPLQKT-FWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred CCCHHHHHHHHHHHhcCC-eEeccchhc-CcccccEEEECCCCCEEEeC
Confidence 885 677889987777 666665444 35568999999999999973
No 87
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=99.17 E-value=1.4e-10 Score=86.05 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=70.4
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCC-CCcCCe-EEcCCCCCCCCCCCCCCCceEEEEeC---CHHHHHHHH
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGS-FDFHGA-WKYPDRMPSIGKIINPKDNHISFQCE---NMATVERKL 82 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~-~~~~~~-~l~~~~~~~~~~~~~~~~~hl~~~v~---d~~~~~~~l 82 (146)
...-||+|+|+|+++|++||+++|++.. ...+. .-.+.. +.+ +............-+|+.++ +++++.+++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde~a~cm~dtI~vM---llt~~D~~~~~evLl~Ls~~Sre~VD~lv~~A 321 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WDGDKLFLLGKTSLYL---QQTKAEKKNRGTTTLSLELECEHDFVRFLRRW 321 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CCCCccccccCcEEEE---EecCCCCCCcceEEEEeccCCHHHHHHHHHHH
Confidence 3456999999999999999999988875 33221 111111 110 11111233445677899887 677889999
Q ss_pred HhcCceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 83 TEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 83 ~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
.++|.+...++.+++ ....|.|||||.||++..
T Consensus 322 ~aaGG~~~~~~~D~G----f~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 322 EMLGGELGEQADGHF----PLRLVFDLDGHIWVVSCV 354 (357)
T ss_pred HHcCCCCCCCccccc----CcceeECCCCCEEEEEEE
Confidence 999997755544433 267899999999999863
No 88
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.05 E-value=3.4e-09 Score=80.28 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=74.1
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhhCCeeeecC---CC-----CCcCCeEEc---CCCCCC----CCCCCCCCCceEEEEeC
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVIGFLPIRRP---GS-----FDFHGAWKY---PDRMPS----IGKIINPKDNHISFQCE 73 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~---~~-----~~~~~~~l~---~~~~~~----~~~~~~~~~~hl~~~v~ 73 (146)
+++|+.|.|+|++++.+||++.|||+..... .. +..++..+. +..... .....+++..|++|.|+
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~V~ 81 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREKASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFRVD 81 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCceeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEEEC
Confidence 6899999999999999999999999987762 11 111111111 111000 00135678999999999
Q ss_pred CHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 74 NMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
|++++++++.++|+.+..++...........-+..+.|..+-|++.
T Consensus 82 Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~ 127 (353)
T TIGR01263 82 DAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDR 127 (353)
T ss_pred CHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcC
Confidence 9999999999999999877654310112333455566666666653
No 89
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.02 E-value=5.6e-09 Score=79.67 Aligned_cols=118 Identities=15% Similarity=0.166 Sum_probs=80.2
Q ss_pred ccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCC----cCC---eEEc------------CCC--CC-CCC----C
Q 036243 6 SLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFD----FHG---AWKY------------PDR--MP-SIG----K 59 (146)
Q Consensus 6 ~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~----~~~---~~l~------------~~~--~~-~~~----~ 59 (146)
.+.+|+||++.|++++.++.||+++|||+..+..+... ..+ ..+. |.. .. ... .
T Consensus 177 gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL~ 256 (398)
T PLN02875 177 GLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYLE 256 (398)
T ss_pred CcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHHH
Confidence 46799999999999999999999999998876433111 111 1111 110 00 000 1
Q ss_pred -CCCCCCceEEEEeCCHHHHHHHHHhc----CceEeecc-eec--------C----C------eeeEEEEEECCCCCeEE
Q 036243 60 -IINPKDNHISFQCENMATVERKLTEM----KIEYVKSR-VEE--------G----G------IYVDQVFFHDPDGSMIE 115 (146)
Q Consensus 60 -~~~~~~~hl~~~v~d~~~~~~~l~~~----G~~~~~~~-~~~--------~----g------~~~~~~~~~DPdG~~ie 115 (146)
..++|..|+||.|+|+.+..++|+++ |+.+...| ..+ + . .....++=.|.+|++++
T Consensus 257 ~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~L~~~~ILvD~d~~G~LLQ 336 (398)
T PLN02875 257 HNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKECEELGILVDKDDQGVLLQ 336 (398)
T ss_pred hcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHHHHHcCEEEecCCCceEEE
Confidence 23589999999999999999999999 99998854 110 1 0 01224455677899999
Q ss_pred EEeeCCCC
Q 036243 116 ICNCDVLP 123 (146)
Q Consensus 116 l~~~~~~~ 123 (146)
+.+.+-..
T Consensus 337 IFTkp~~~ 344 (398)
T PLN02875 337 IFTKPVGD 344 (398)
T ss_pred EeccccCC
Confidence 99866543
No 90
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=4.3e-09 Score=74.02 Aligned_cols=103 Identities=18% Similarity=0.327 Sum_probs=74.3
Q ss_pred cceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCC---------CCcCCeEEc------CC----------CCCCCCCCC
Q 036243 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGS---------FDFHGAWKY------PD----------RMPSIGKII 61 (146)
Q Consensus 7 ~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~---------~~~~~~~l~------~~----------~~~~~~~~~ 61 (146)
..+.-|+++.|.|.++++.||+++||+++.+..+- -.+++.|.. |+ ++.......
T Consensus 15 ~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Yel 94 (299)
T KOG2943|consen 15 TRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYEL 94 (299)
T ss_pred chheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceec
Confidence 46789999999999999999999999999987541 112334422 21 222222245
Q ss_pred CCCCceEEEEeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 62 NPKDNHISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 62 ~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
+.++.|+.+.++++-+..+.+...|.+. .|. -.+++.||||+.+++++
T Consensus 95 Gndfg~i~I~s~dv~~~ve~v~~p~~~~-------~g~--~~~~v~dPdGykF~l~~ 142 (299)
T KOG2943|consen 95 GNDFGGITIASDDVFSKVEKVNAPGGKG-------SGC--GIAFVKDPDGYKFYLID 142 (299)
T ss_pred cCCcccEEEeHHHHHHHHHHhcCcCCcc-------cce--EEEEEECCCCcEEEEec
Confidence 6788899999988888877777655421 122 67799999999999997
No 91
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.97 E-value=3.7e-08 Score=64.64 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=74.5
Q ss_pred EEEEcC-CHHHHHHHHHHhhCCeeeecCCC-------------------CCcCCeEEc-CCCCCCCCCC-CCCCCceEEE
Q 036243 13 FSLVCR-SVEKSLDFYQNVIGFLPIRRPGS-------------------FDFHGAWKY-PDRMPSIGKI-INPKDNHISF 70 (146)
Q Consensus 13 v~l~v~-D~~~a~~Fy~~~Lg~~~~~~~~~-------------------~~~~~~~l~-~~~~~~~~~~-~~~~~~hl~~ 70 (146)
..|..+ |-++|++||+++||.+....... +..++..++ .+..+..... ..+...-|.+
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~~~~~~~~s~~l~~ 83 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMGATEGGGTSLSLDL 83 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccCcccCCCeeEEEEE
Confidence 457788 99999999999999987775221 112232222 2222222111 1223345667
Q ss_pred EeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 71 QCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 71 ~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
.++|++++++++.+.|+++..+..+.. |+.++..+.||.|+.|-|....+
T Consensus 84 ~~~d~da~f~~a~~aGa~v~mpl~~~f-wG~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 84 YVEDVDAVFERAAAAGATVVMPLEDTF-WGDRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EehHHHHHHHHHHhcCCeEEecchhcC-cccceEEEECCCCCEEEEecCcc
Confidence 777999999999999999988865544 45589999999999999987554
No 92
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.84 E-value=3.4e-08 Score=69.60 Aligned_cols=114 Identities=11% Similarity=0.189 Sum_probs=75.1
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCC-----cCC-e-EEcCCCCCCCCCCCCCCCceEEEEe--CCHHHH
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFD-----FHG-A-WKYPDRMPSIGKIINPKDNHISFQC--ENMATV 78 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~-----~~~-~-~l~~~~~~~~~~~~~~~~~hl~~~v--~d~~~~ 78 (146)
..+..|.|.|.|+++|+.||+++||+++.+..+... ++. + -|.-....... ....++..++|.+ +++..+
T Consensus 148 ~pv~~V~l~VgdL~ks~kyw~~~lgM~ilekeek~t~~~mgYgd~q~~LElt~~~~~i-d~~kg~griafaip~d~~~~l 226 (299)
T KOG2943|consen 148 DPVLQVMLNVGDLQKSIKYWEKLLGMKILEKEEKYTRARMGYGDEQCVLELTYNYDVI-DRAKGFGRIAFAIPTDDLPKL 226 (299)
T ss_pred CCeEEEEEEehhHHHHHHHHHHHhCcchhhhhhhhhhhhhccCCcceEEEEEeccCcc-cccccceeEEEeccccccccH
Confidence 457899999999999999999999999998543111 111 1 11000011111 2334566666666 488888
Q ss_pred HHHHHhcCceEeeccee--cC-CeeeEEEEEECCCCCeEEEEeeCCC
Q 036243 79 ERKLTEMKIEYVKSRVE--EG-GIYVDQVFFHDPDGSMIEICNCDVL 122 (146)
Q Consensus 79 ~~~l~~~G~~~~~~~~~--~~-g~~~~~~~~~DPdG~~iel~~~~~~ 122 (146)
.+.++..+.++..+... .+ +.....+.+.||||+.+.|+....+
T Consensus 227 ~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F 273 (299)
T KOG2943|consen 227 QEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGF 273 (299)
T ss_pred HHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHH
Confidence 88888886655544332 22 2356889999999999999986653
No 93
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.59 E-value=2.4e-06 Score=54.27 Aligned_cols=108 Identities=18% Similarity=0.152 Sum_probs=60.1
Q ss_pred eEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCC-----e--EEc-CCCCCCCCCCCCCCCceEEEEeCCHHHHHHHH
Q 036243 11 NHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHG-----A--WKY-PDRMPSIGKIINPKDNHISFQCENMATVERKL 82 (146)
Q Consensus 11 ~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~-----~--~l~-~~~~~~~~~~~~~~~~hl~~~v~d~~~~~~~l 82 (146)
.+-+|.|+|-+..++||++.|||++......+..-+ . ++. ........-...-...++.+.|++.+++ +.|
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEna~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~EI-e~L 80 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEENALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPKEI-EAL 80 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEETTEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHHHH-HHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccccEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHHHH-HHH
Confidence 467899999999999999999999988765221111 1 111 1122221112223678899999986655 455
Q ss_pred HhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCC
Q 036243 83 TEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVL 122 (146)
Q Consensus 83 ~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~ 122 (146)
.++|.++..-- .|..++.|-..+|+|.+|.+...+..
T Consensus 81 Lar~~~~~~l~---kg~~gyAfe~vSPEgd~~llhaEdd~ 117 (125)
T PF14506_consen 81 LARGAQYDRLY---KGKNGYAFEAVSPEGDRFLLHAEDDI 117 (125)
T ss_dssp HHC-S--SEEE---E-SSSEEEEEE-TT--EEEEE--S-G
T ss_pred HhcccccceeE---EcCCceEEEEECCCCCEEEEEEcCCH
Confidence 56666543332 23334888899999999999986654
No 94
>PRK10148 hypothetical protein; Provisional
Probab=98.55 E-value=4.1e-06 Score=55.97 Aligned_cols=107 Identities=13% Similarity=0.027 Sum_probs=66.6
Q ss_pred EEEEcC-CHHHHHHHHHHhhCCeeeecC---CC--------------------------CCcCCeEEc-CCCCCCCCCCC
Q 036243 13 FSLVCR-SVEKSLDFYQNVIGFLPIRRP---GS--------------------------FDFHGAWKY-PDRMPSIGKII 61 (146)
Q Consensus 13 v~l~v~-D~~~a~~Fy~~~Lg~~~~~~~---~~--------------------------~~~~~~~l~-~~~~~~~~~~~ 61 (146)
..|... |-++|++||+++||.++.... +. +..++..+. .+..+.. ..
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~~--~~ 82 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSG--KA 82 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCCc--CC
Confidence 455665 899999999999998875431 00 001121111 1111111 11
Q ss_pred CCCCceEEEEeCCHHH---HHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCCC
Q 036243 62 NPKDNHISFQCENMAT---VERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVLP 123 (146)
Q Consensus 62 ~~~~~hl~~~v~d~~~---~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~~ 123 (146)
.....++++.++|.++ +++.| +.|.++..++.+.. ++.++..+.||.|+.|.|.....-|
T Consensus 83 ~~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~-wg~~~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 83 HYSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETF-WAHGFGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred CCCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcc-hhhccEEEECCCCCEEEEEecCCCC
Confidence 2235678888888877 45555 57888887765543 4448889999999999998754333
No 95
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.42 E-value=2e-06 Score=61.82 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=29.9
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecC
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRP 39 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~ 39 (146)
..|.||+|.|.|++++.+||+++|||+...+.
T Consensus 167 t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~ 198 (265)
T COG2514 167 TIIGHVHLKVADLEEAEQFYEDVLGLEVTARG 198 (265)
T ss_pred cEEeEEEEEeCCHHHHHHHHHHhcCCeeeecC
Confidence 57999999999999999999999999998873
No 96
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.38 E-value=7.2e-07 Score=58.83 Aligned_cols=116 Identities=17% Similarity=0.243 Sum_probs=73.7
Q ss_pred CCCCccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCC-----cCCeE-EcCCCCCCC----CCCCCCCCceEEEE
Q 036243 2 QNPLSLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFD-----FHGAW-KYPDRMPSI----GKIINPKDNHISFQ 71 (146)
Q Consensus 2 ~~~m~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~-----~~~~~-l~~~~~~~~----~~~~~~~~~hl~~~ 71 (146)
.+||.+.++.||.+.+.|.+++..+++ .|||+...+-..-. -+..- +-....... ...++++..-++|.
T Consensus 2 ~nP~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk~v~l~rQG~I~~vln~ep~s~a~~~~~~HG~sv~aiafr 80 (139)
T PF14696_consen 2 DNPLGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSKDVTLYRQGDINFVLNSEPDSFAAEFAAQHGPSVCAIAFR 80 (139)
T ss_dssp --TT-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCCSEEEEEETTEEEEEEEESTSCHHHHHHHHSSEEEEEEEE
T ss_pred CCCCCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCcceEEEEeCCEEEEEeCCCcchHHHHHHhcCCEEEEEEEE
Confidence 368999999999999999888888886 59999887633111 11111 110000000 01357888999999
Q ss_pred eCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeC
Q 036243 72 CENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 72 v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 120 (146)
|+|.+++++++.++|.+....+.... ....--++.+.|.++.|++..
T Consensus 81 V~Da~~A~~rA~~~GA~~~~~~~~~~--e~~~paI~g~G~sl~yfVdr~ 127 (139)
T PF14696_consen 81 VDDAAAAYERAVALGAEPVQEPTGPG--ELNIPAIRGIGGSLHYFVDRY 127 (139)
T ss_dssp ES-HHHHHHHHHHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE--
T ss_pred eCCHHHHHHHHHHcCCcCcccCCCCC--cEeeeeEEccCCCEEEEEecC
Confidence 99999999999999998887764333 236667888999999999853
No 97
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.37 E-value=1.8e-06 Score=63.31 Aligned_cols=116 Identities=10% Similarity=0.145 Sum_probs=78.4
Q ss_pred ccceeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCC-----------CCcC-CeEEcCCCCCCCC-------CCCCCCCc
Q 036243 6 SLKSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGS-----------FDFH-GAWKYPDRMPSIG-------KIINPKDN 66 (146)
Q Consensus 6 ~~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~-----------~~~~-~~~l~~~~~~~~~-------~~~~~~~~ 66 (146)
++.+++||.+.|.|...+..||+..|||+.....+- ...+ .+++....+.... ..++-+..
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvk 93 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVK 93 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccchh
Confidence 467899999999999999999999999998875430 0111 1233211111111 13455677
Q ss_pred eEEEEeCCHHHHHHHHHhcCceEeecceecCCe--eeEEEEEECCCCCeEEEEeeCC
Q 036243 67 HISFQCENMATVERKLTEMKIEYVKSRVEEGGI--YVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 67 hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~--~~~~~~~~DPdG~~iel~~~~~ 121 (146)
.+||.|+|++++.+.+.++|+++..+|.+.... ..+++.+..+.-...-+++...
T Consensus 94 dvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~ 150 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKG 150 (381)
T ss_pred ceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhcc
Confidence 899999999999999999999999887553211 2366667666554445555433
No 98
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.23 E-value=3.1e-05 Score=59.47 Aligned_cols=111 Identities=7% Similarity=0.009 Sum_probs=77.2
Q ss_pred eeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCc-----------CC-eEEcCCCCCC-------------------C-
Q 036243 10 LNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDF-----------HG-AWKYPDRMPS-------------------I- 57 (146)
Q Consensus 10 i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~-----------~~-~~l~~~~~~~-------------------~- 57 (146)
++||.+.|.|..++..||+..|||+.......... +. .++....+.. .
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 68999999999999999999999998775441110 11 1111111100 0
Q ss_pred -C----CCCCCCCceEEEEeCCHHHHHHHHHhcCceEeecceecCC----eeeEEEEEECCCCCeEEEEeeC
Q 036243 58 -G----KIINPKDNHISFQCENMATVERKLTEMKIEYVKSRVEEGG----IYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 58 -~----~~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~~g----~~~~~~~~~DPdG~~iel~~~~ 120 (146)
. ..++++..-++|.|+|++++++++.++|.+...++..... ......-+.-+.|.++-|++..
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~ 152 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYK 152 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccC
Confidence 0 1346788899999999999999999999998877654311 1235556778888888888854
No 99
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.05 E-value=1.1e-05 Score=60.01 Aligned_cols=115 Identities=15% Similarity=0.221 Sum_probs=76.1
Q ss_pred ccceeeEEEEEcC--CHHHHHHHHHHhhCCeeeecCCC-CCcCCeEE----cC-C------CCCCC----C-----CCCC
Q 036243 6 SLKSLNHFSLVCR--SVEKSLDFYQNVIGFLPIRRPGS-FDFHGAWK----YP-D------RMPSI----G-----KIIN 62 (146)
Q Consensus 6 ~~~~i~hv~l~v~--D~~~a~~Fy~~~Lg~~~~~~~~~-~~~~~~~l----~~-~------~~~~~----~-----~~~~ 62 (146)
.+..|+|++..|+ .++.+..||+++|+|+.....+- ...++..- .+ + +.+.. . ...+
T Consensus 164 g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G 243 (363)
T COG3185 164 GLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRG 243 (363)
T ss_pred CceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCC
Confidence 4568999988877 89999999999999988776441 11222211 11 0 11110 0 1346
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcCceEeecceec--------CC--------eeeEEEEEECCCC-CeEEEEeeC
Q 036243 63 PKDNHISFQCENMATVERKLTEMKIEYVKSRVEE--------GG--------IYVDQVFFHDPDG-SMIEICNCD 120 (146)
Q Consensus 63 ~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~--------~g--------~~~~~~~~~DPdG-~~iel~~~~ 120 (146)
.|+.|++|.++|+-+..++++++|+++.+.|... ++ ......|=.|++| .++.+.+.+
T Consensus 244 ~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~tYYd~~~~R~~~~~e~ld~Lr~~~IL~D~~~~~~~lLQift~~ 318 (363)
T COG3185 244 EGIQHIAFGTDDIYATVAALRERGVKFLPIPETYYDDLDARFPLHGEFLDALRELEILYDGDGGGGELLQIFTRT 318 (363)
T ss_pred CcceEEEecccHHHHHHHHHHHcCCccCCCchhHHHHHhhcCCCChHHHHHHHhcCeEeecCCCCcEEEEEeccc
Confidence 6899999999999999999999999998765432 11 0224455566777 566666544
No 100
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.03 E-value=4.3e-05 Score=52.31 Aligned_cols=112 Identities=13% Similarity=0.187 Sum_probs=55.0
Q ss_pred eeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCC---------cCCeEEc-----CCCCC----CCC---C-CCCCCCce
Q 036243 10 LNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFD---------FHGAWKY-----PDRMP----SIG---K-IINPKDNH 67 (146)
Q Consensus 10 i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~---------~~~~~l~-----~~~~~----~~~---~-~~~~~~~h 67 (146)
|+|+.+.|+|++++.++|++.|||.+.....+.. ++..+|. +.... ... . ....|...
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYG 80 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEE
Confidence 6999999999999999997789999887644221 2222332 11000 000 0 13568889
Q ss_pred EEEEeCCHHHHHHHHHhcCceEeecceecCCe-eeEEEEEECC----CCCeEEEEeeCC
Q 036243 68 ISFQCENMATVERKLTEMKIEYVKSRVEEGGI-YVDQVFFHDP----DGSMIEICNCDV 121 (146)
Q Consensus 68 l~~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~-~~~~~~~~DP----dG~~iel~~~~~ 121 (146)
+|+.++|+++..+++++.|+.......+.++. .-+.+++.++ .+..=.+++...
T Consensus 81 ~~l~t~d~~~~~~~l~~~G~~~~~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~ 139 (175)
T PF13468_consen 81 WALRTDDIEAVAARLRAAGLDAGSRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWET 139 (175)
T ss_dssp EEEE-S-HHHHHHHHHTTT-EEEEEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS
T ss_pred EEEecCCHHHHHHHHHhcCCCCCCcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCC
Confidence 99999999999999999998722221112221 2245566664 256667775444
No 101
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00029 Score=52.03 Aligned_cols=117 Identities=16% Similarity=0.207 Sum_probs=79.9
Q ss_pred CccceeeEEEEEcC--CHHHHHHHHHHhhCCeeeecCCCCCc---------------CCeEEcC--CCCCCCC-------
Q 036243 5 LSLKSLNHFSLVCR--SVEKSLDFYQNVIGFLPIRRPGSFDF---------------HGAWKYP--DRMPSIG------- 58 (146)
Q Consensus 5 m~~~~i~hv~l~v~--D~~~a~~Fy~~~Lg~~~~~~~~~~~~---------------~~~~l~~--~~~~~~~------- 58 (146)
+.+.+++|++..++ .++.+.+||.+.|||.-.+..+.... ++....+ +..+...
T Consensus 174 ~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~mpinEp~~G~k~ksQIqe 253 (381)
T KOG0638|consen 174 GGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKMPINEPAPGKKKKSQIQE 253 (381)
T ss_pred cceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEEeccCCCCCCccHHHHHH
Confidence 56789999999999 58999999999999988776442211 1111111 1111110
Q ss_pred ---CCCCCCCceEEEEeCCHHHHHHHHHhcCceEeecceecC-------C-------------eeeEEEEEECCCCCeEE
Q 036243 59 ---KIINPKDNHISFQCENMATVERKLTEMKIEYVKSRVEEG-------G-------------IYVDQVFFHDPDGSMIE 115 (146)
Q Consensus 59 ---~~~~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~~-------g-------------~~~~~~~~~DPdG~~ie 115 (146)
...++|..|+++.++|+-++.+.++++|..+...|.... + .......=.|-.|++++
T Consensus 254 yv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gyLLQ 333 (381)
T KOG0638|consen 254 YVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQ 333 (381)
T ss_pred HHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEEee
Confidence 145678999999999999999999999998886553210 0 01223344577899999
Q ss_pred EEeeCC
Q 036243 116 ICNCDV 121 (146)
Q Consensus 116 l~~~~~ 121 (146)
|.+.+-
T Consensus 334 IFTKpl 339 (381)
T KOG0638|consen 334 IFTKPL 339 (381)
T ss_pred eecccc
Confidence 997443
No 102
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.20 E-value=0.0051 Score=46.21 Aligned_cols=107 Identities=11% Similarity=0.159 Sum_probs=69.5
Q ss_pred CCCccceeeEEEEEcCCH-HHHHHHHHHhhCCeeeecCCC-----CCcCCeEEc--CCCC---CCCCCCCCCCCceEEEE
Q 036243 3 NPLSLKSLNHFSLVCRSV-EKSLDFYQNVIGFLPIRRPGS-----FDFHGAWKY--PDRM---PSIGKIINPKDNHISFQ 71 (146)
Q Consensus 3 ~~m~~~~i~hv~l~v~D~-~~a~~Fy~~~Lg~~~~~~~~~-----~~~~~~~l~--~~~~---~~~~~~~~~~~~hl~~~ 71 (146)
.|+...++.+|.+.|.|. ++...++. .|||......-. +.-+...+- .... ......++++..-++|.
T Consensus 16 ~P~~~~GfeFvEf~~~d~~~~l~~l~~-~lGF~~~~~Hrsk~v~l~rQGdinlvvn~~~~s~a~~f~~~Hgps~~a~a~~ 94 (363)
T COG3185 16 NPEGTDGFEFVEFAVPDPQEALGALLG-QLGFTAVAKHRSKAVTLYRQGDINLVVNAEPDSFAAEFLDKHGPSACAMAFR 94 (363)
T ss_pred CCCCCCceeEEEEecCCHHHHHHHHHH-HhCccccccccccceeEEEeCCEEEEEcCCCcchhhHHHHhcCCchheeEEe
Confidence 567789999999999999 55555555 599987765321 111222211 1111 11112578889999999
Q ss_pred eCCHHHHHHHHHhcCceEeeccee-----cC---CeeeEEEEEECCC
Q 036243 72 CENMATVERKLTEMKIEYVKSRVE-----EG---GIYVDQVFFHDPD 110 (146)
Q Consensus 72 v~d~~~~~~~l~~~G~~~~~~~~~-----~~---g~~~~~~~~~DPd 110 (146)
|+|...+++++++.|.+....+.- .+ |.++..+||.|.+
T Consensus 95 V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~ 141 (363)
T COG3185 95 VDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRY 141 (363)
T ss_pred eCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccC
Confidence 999999999999999855544331 11 1244677777777
No 103
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.94 E-value=0.0033 Score=39.05 Aligned_cols=91 Identities=16% Similarity=0.178 Sum_probs=43.3
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhhCCeeeecCCCCCcCCeEEcC--CCCCCCCCCCCCCCceEEEEeC---CHHHHHHHHH
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPGSFDFHGAWKYP--DRMPSIGKIINPKDNHISFQCE---NMATVERKLT 83 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~hl~~~v~---d~~~~~~~l~ 83 (146)
.+..+.|.|+| +++.+||+++||-++. ....+... ..+.... ...=....+-|.|+ |+.++.+++.
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~~-------~~l~f~ea~G~DL~~~~-~~twDLe~Lkf~V~~~~Dl~~L~~~le 75 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQLP-------FFLTFQEAQGPDLTIEN-NETWDLEMLKFQVPKDFDLAALKSHLE 75 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHHT-------TTEEEEE---CCGSS-T-TSBSSEEEEEEEES-S--HHHHHHHTT
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCCC-------ceEEEeeccCCccccCC-CcEEeeEEEEEEecCcccHHHHHHHhc
Confidence 35678999999 8899999998863221 11111110 1111111 22235677888998 7888889998
Q ss_pred hcCceEeecceecCCeeeEEEEEECCCCCeEEE
Q 036243 84 EMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEI 116 (146)
Q Consensus 84 ~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel 116 (146)
+.++-+ +. .+ +.+.+.||.|..|-+
T Consensus 76 ~~~~fi-dK----k~---k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 76 EQEFFI-DK----KE---KFLVTSDPSQIELWF 100 (101)
T ss_dssp TS-EE---T----T----SEEEEE-TTS-EEEE
T ss_pred ccceEe-cC----Cc---eEEEEECCcceEEEe
Confidence 844422 22 11 888999999976654
No 104
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.90 E-value=0.013 Score=37.45 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=49.9
Q ss_pred EEEEEcCCHHHHHHHHHHhhCCe-eeec---CC------------CCCcCCeEEcCCCCCCCCCCCCCCCceEEEEeCCH
Q 036243 12 HFSLVCRSVEKSLDFYQNVIGFL-PIRR---PG------------SFDFHGAWKYPDRMPSIGKIINPKDNHISFQCENM 75 (146)
Q Consensus 12 hv~l~v~D~~~a~~Fy~~~Lg~~-~~~~---~~------------~~~~~~~~l~~~~~~~~~~~~~~~~~hl~~~v~d~ 75 (146)
|+.+. .+-++|.+||+++||-. +... ++ .+..++..++..+.... ........+++.+++.
T Consensus 6 yL~F~-g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~~--~~~~~~~sl~i~~~~~ 82 (116)
T PF06983_consen 6 YLWFN-GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGPD--FPFGNNISLCIECDDE 82 (116)
T ss_dssp EEEES-S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEESTS------TTEEEEEEESSH
T ss_pred EEEeC-CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCCC--CCCCCcEEEEEEcCCH
Confidence 34443 58999999999999843 2221 11 01122222221111111 1223457788888865
Q ss_pred H---HHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEE
Q 036243 76 A---TVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEIC 117 (146)
Q Consensus 76 ~---~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 117 (146)
+ .++++|.+.|- . .. ....+.|..|..|.|+
T Consensus 83 ee~~~~f~~Ls~gG~---------~-~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 83 EEIDRIFDKLSEGGQ---------W-FS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHHTTTE---------T-CC-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHHcCCC---------c-cc-eeEEEEeCCCCEEEeC
Confidence 5 55677777666 1 12 6669999999999986
No 105
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=96.88 E-value=0.0058 Score=38.30 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=42.5
Q ss_pred ceEEEEeCCHHHHHHHHHh-cCceEeecceecCCeeeEEEEEECCCC-CeEEEEeeCCCC
Q 036243 66 NHISFQCENMATVERKLTE-MKIEYVKSRVEEGGIYVDQVFFHDPDG-SMIEICNCDVLP 123 (146)
Q Consensus 66 ~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~g~~~~~~~~~DPdG-~~iel~~~~~~~ 123 (146)
+|++|.|+|++++.+.+.+ .|+....... ..+.+.+..++..++| ..|||+++..-.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~-~~~~~v~~~~~~~~~~~~~iELi~p~~~~ 59 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYR-DEPQGVRVAFLYLGDGPVQIELIQPLDGD 59 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEE-EGCTTEEEEEEEETTETEEEEEEEESSTT
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEe-cCCCCEEEEEEEeCCCcEEEEEEEeCCCC
Confidence 5999999999999999998 8987654432 2223446777888888 689999976644
No 106
>PF15067 FAM124: FAM124 family
Probab=96.58 E-value=0.02 Score=40.76 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=57.7
Q ss_pred eeeEEEEEcC--CHHHHHHHHHHhhCCeeeecCCCCCc------CCeEEc--CCCCCCCCCCCCCCCceEEEEeCCHHHH
Q 036243 9 SLNHFSLVCR--SVEKSLDFYQNVIGFLPIRRPGSFDF------HGAWKY--PDRMPSIGKIINPKDNHISFQCENMATV 78 (146)
Q Consensus 9 ~i~hv~l~v~--D~~~a~~Fy~~~Lg~~~~~~~~~~~~------~~~~l~--~~~~~~~~~~~~~~~~hl~~~v~d~~~~ 78 (146)
.+--+.|.|+ |.+.+++||+-+|+-+.....++|-+ .+.-++ -..++...........-+.|.|.|+-++
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~~FC~F~lys~~~~~iQlsLK~lp~~~~p~p~esavLqF~V~~igqL 207 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKEDFCFFTLYSQPGLDIQLSLKQLPPGMSPEPTESAVLQFRVEDIGQL 207 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeCCcEEEEEecCCCeEEEEEeccCCCCCCcccccceEEEEEecchhhh
Confidence 4556789999 99999999999999877655442211 111111 1222222213334567899999998887
Q ss_pred HHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEE
Q 036243 79 ERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIE 115 (146)
Q Consensus 79 ~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 115 (146)
.--| ..+...-+. ...-.+|||||.|=
T Consensus 208 vpLL--------Pnpc~PIS~--~rWqT~D~DGNkIL 234 (236)
T PF15067_consen 208 VPLL--------PNPCSPISE--TRWQTEDYDGNKIL 234 (236)
T ss_pred cccC--------CCCcccccC--CcceeeCCCCCEec
Confidence 4332 222111111 23478999999874
No 107
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=95.84 E-value=0.017 Score=39.48 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=30.7
Q ss_pred CceEEEEeCCHHHHHHHH-HhcCceEeecceecC-CeeeEEEEEECCCCCeEEEEeeCC
Q 036243 65 DNHISFQCENMATVERKL-TEMKIEYVKSRVEEG-GIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 65 ~~hl~~~v~d~~~~~~~l-~~~G~~~~~~~~~~~-g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
+.|+.+.|+|++++.+++ +..|+++..+..-.. |.....++| ++| +|||+...+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f--~~~-YlEli~i~~ 56 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPF--GDG-YLELIAIDP 56 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE---SSS-EEEEEEES-
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEee--CCc-eEEEEEeCC
Confidence 379999999999999999 888999987743332 333344444 777 999999644
No 108
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=94.45 E-value=0.41 Score=30.96 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=39.6
Q ss_pred CCceEEEEeCCHHHHHHHHHhcCceEeecceec----------CCeeeEEEEEECCCC-CeEEEEeeC
Q 036243 64 KDNHISFQCENMATVERKLTEMKIEYVKSRVEE----------GGIYVDQVFFHDPDG-SMIEICNCD 120 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~----------~g~~~~~~~~~DPdG-~~iel~~~~ 120 (146)
+..|+++.|.|+++..+..+..|..+....... .+......++..|+| ..|||+++.
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~ 70 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFH 70 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEec
Confidence 578999999999999999988998775442111 011234556666655 689999854
No 109
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=94.14 E-value=0.73 Score=28.58 Aligned_cols=58 Identities=9% Similarity=0.102 Sum_probs=40.1
Q ss_pred CCceEEEEeCCHHHHHHHHHh-cCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCC
Q 036243 64 KDNHISFQCENMATVERKLTE-MKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVL 122 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~ 122 (146)
+..|+++.|.|+++..+..++ .|+.+........+ ..+.+.+..+++..+++......
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~~~~~~ 61 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPER-GSYKLDLLLNGGYQLELFSFPNP 61 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCC-CcEEEEEecCCCcEEEEEEcCCC
Confidence 678999999999999999985 79887654322221 11344555567788898865543
No 110
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=93.84 E-value=0.71 Score=28.75 Aligned_cols=59 Identities=15% Similarity=0.243 Sum_probs=39.6
Q ss_pred CCceEEEEeCCHHHHHHHHHh-cCceEeecceecCCeeeEEEEEECC---CCCeEEEEeeCCC
Q 036243 64 KDNHISFQCENMATVERKLTE-MKIEYVKSRVEEGGIYVDQVFFHDP---DGSMIEICNCDVL 122 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~g~~~~~~~~~DP---dG~~iel~~~~~~ 122 (146)
+..|+++.|+|+++..+..++ .|++.........+......++.+. .|..++|...+..
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 63 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDA 63 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCC
Confidence 468999999999999999986 5988765532222111134455554 6778999876543
No 111
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=93.64 E-value=0.41 Score=28.53 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=34.4
Q ss_pred CHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 74 NMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
..+++.+.+.+.|+.+..-.....|. +.+...|.||+.+|+.-
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~--yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGC--YEVEARDKDGKKVEVYV 72 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCE--EEEEEEECCCCEEEEEE
Confidence 68899999999999665554434433 88999999999999975
No 112
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=92.48 E-value=1.5 Score=29.42 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=40.9
Q ss_pred CCCceEEEEeCCHHHHHHHHHh-cCceEeecce---ec------------C--CeeeEEEEEECCCCCeEEEEeeCC
Q 036243 63 PKDNHISFQCENMATVERKLTE-MKIEYVKSRV---EE------------G--GIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 63 ~~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~---~~------------~--g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
.+..|+++.|.|+++..+-.++ .|.++...+. +. + +......++..++|..||++++..
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccC
Confidence 3678999999999999999976 6987643210 00 1 012345566667788899999765
No 113
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=91.40 E-value=0.14 Score=34.51 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=25.2
Q ss_pred cceeeEEEEEcCCHHHHHHHHHHhhCCeeee
Q 036243 7 LKSLNHFSLVCRSVEKSLDFYQNVIGFLPIR 37 (146)
Q Consensus 7 ~~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~ 37 (146)
..++.|+.|.+++.-+...||...||++...
T Consensus 40 ytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~ 70 (170)
T KOG2944|consen 40 YTRVNGMALLVPDDFKEAKFSLYFLGAEVSE 70 (170)
T ss_pred hhhhccceeechhhhhHhhhHHHhhcccccc
Confidence 3578889999999999999999989886433
No 114
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=89.70 E-value=2.4 Score=26.42 Aligned_cols=56 Identities=11% Similarity=0.045 Sum_probs=37.0
Q ss_pred CceEEEEeCCHHHHHHHHHh-cCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 65 DNHISFQCENMATVERKLTE-MKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 65 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
+.|+++.|.|+++..+.... .|..........++......++. .+|..++|+++..
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~ 57 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLG-LGNVQIELIEPLD 57 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEE-cCCEEEEEEEECC
Confidence 36999999999999999887 78777654322111111334444 3678899997544
No 115
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=89.20 E-value=2.3 Score=29.50 Aligned_cols=58 Identities=14% Similarity=0.040 Sum_probs=40.8
Q ss_pred CCceEEEEeC--CHHHHHHHHHh-cCceEeecceecC-CeeeEEEEEECCCC-CeEEEEeeCC
Q 036243 64 KDNHISFQCE--NMATVERKLTE-MKIEYVKSRVEEG-GIYVDQVFFHDPDG-SMIEICNCDV 121 (146)
Q Consensus 64 ~~~hl~~~v~--d~~~~~~~l~~-~G~~~~~~~~~~~-g~~~~~~~~~DPdG-~~iel~~~~~ 121 (146)
+..|+++.|+ |++++.+..++ .|........... ..+.+...+..|+| ..++|.++..
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~ 65 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPAS 65 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCC
Confidence 5789999999 99999999865 7887655422111 12447778888875 5678887544
No 116
>PRK11478 putative lyase; Provisional
Probab=88.94 E-value=3.7 Score=25.77 Aligned_cols=57 Identities=11% Similarity=0.018 Sum_probs=35.8
Q ss_pred CCceEEEEeCCHHHHHHHHHh-cCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 64 KDNHISFQCENMATVERKLTE-MKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
+..|+++.|+|+++..+...+ .|.++........ ...+...+.-.++..+++++.+.
T Consensus 6 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~ 63 (129)
T PRK11478 6 QVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREA-RDSWKGDLALNGQYVIELFSFPF 63 (129)
T ss_pred eecEEEEEcCCHHHHHHHHHHHhCCEecccccccc-cccceeeEecCCCcEEEEEEecC
Confidence 578999999999999998865 6988754321111 00022222223467899987544
No 117
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=88.48 E-value=3.6 Score=25.78 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=36.1
Q ss_pred CCceEEEEeCCHHHHHHHHHhc----CceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 64 KDNHISFQCENMATVERKLTEM----KIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~~~----G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
++.|+.+.|+|+++..+...+. |.+..... . . ...|+...++..+++.+...
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~-~-~----~~~~~~~~~~~~i~l~~~~~ 56 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEW-E-D----GRSWRAGDGGTYLVLQQADG 56 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEee-c-c----CceEEecCCceEEEEEeccc
Confidence 4689999999999999999876 88876543 1 1 11233225667888887554
No 118
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=88.43 E-value=4.2 Score=25.10 Aligned_cols=55 Identities=11% Similarity=0.174 Sum_probs=35.7
Q ss_pred CceEEEEeCCHHHHHHHHHh-cCceEeecce-ecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 65 DNHISFQCENMATVERKLTE-MKIEYVKSRV-EEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 65 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~-~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
..|+++.|+|+++..+...+ .|.+...... +..+. ...++.-.+|..+++++.+.
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~ 58 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGF--ESYFLSFDDGARLELMTRPD 58 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCc--eEEEEecCCCcEEEEEcCcc
Confidence 57999999999999988877 4877643311 11221 23334334678899987543
No 119
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=88.35 E-value=4.2 Score=25.02 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=39.6
Q ss_pred CCceEEEEeCCHHHHHHHHHh-cCceEeecce-ecCCeeeEEEEEECCCCCeEEEEeeCCC
Q 036243 64 KDNHISFQCENMATVERKLTE-MKIEYVKSRV-EEGGIYVDQVFFHDPDGSMIEICNCDVL 122 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~-~~~g~~~~~~~~~DPdG~~iel~~~~~~ 122 (146)
++.|+++.|.|+++..+.... .|.++..... ..........++...+. .+++......
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 60 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG-HIELFLNPSP 60 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS-CEEEEEEESS
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc-ceeeeeeccc
Confidence 468999999999999998886 5988887754 22222334555555555 5777765444
No 120
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.34 E-value=5.7 Score=26.47 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=50.5
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeee---c-CC-C------------CCcCCeEEcC-CCCCCCCCCCCCCCceEE
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIR---R-PG-S------------FDFHGAWKYP-DRMPSIGKIINPKDNHIS 69 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~---~-~~-~------------~~~~~~~l~~-~~~~~~~~~~~~~~~hl~ 69 (146)
.+|.-.-..-.+.++|..||.++|.=..+. + ++ . +...|+++.. +.-+... -.-....-+-
T Consensus 4 ~kit~~L~F~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~~-f~fneA~S~~ 82 (151)
T COG3865 4 PKITPFLWFDGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPNTS-FKFNEAFSFQ 82 (151)
T ss_pred CcceeEEEECCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCCcC-CCcCccEEEE
Confidence 344333333489999999999998543322 1 11 1 1122222210 0001000 0011122344
Q ss_pred EEeCC---HHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 70 FQCEN---MATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 70 ~~v~d---~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
+.+++ +|.+...|.+.|. +.. ...+++|..|.-|+|+-.
T Consensus 83 v~~~~q~E~Drlwnal~~~g~-------e~~----~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 83 VACDDQEEIDRLWNALSDNGG-------EAE----ACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred EEcCCHHHHHHHHHHHhccCc-------chh----cceeEecccCcEEEEcHH
Confidence 45554 4555677776665 111 334899999999999853
No 121
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=88.06 E-value=3.6 Score=24.29 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=38.7
Q ss_pred eEEEEeCCHHHHHHHHHh-cCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCCC
Q 036243 67 HISFQCENMATVERKLTE-MKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVLP 123 (146)
Q Consensus 67 hl~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~~ 123 (146)
|+.+.+.|+++..+.+.+ .|.+....... .. ....++.++ +..++|...+..+
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~-~~--~~~~~~~~~-~~~i~l~~~~~~~ 54 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN-GG--AEFAVLGLG-GTRLELFEGDEPA 54 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc-CC--EEEEEEecC-CceEEEecCCCCC
Confidence 789999999999999997 89887766421 11 144556555 7899999866543
No 122
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=87.47 E-value=3.3 Score=24.85 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=36.2
Q ss_pred CceEEEEeCCHHHHHHHHH-hcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCCC
Q 036243 65 DNHISFQCENMATVERKLT-EMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVLP 123 (146)
Q Consensus 65 ~~hl~~~v~d~~~~~~~l~-~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~~ 123 (146)
+.|+++.|+|+++..+... -.|......+.... ...++..+++..+++...+...
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~----~~~~~~~~~~~~i~l~~~~~~~ 56 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF----PGAWLYAGDGPQLHLIEEDPPD 56 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC----CceEEEeCCCcEEEEEecCCCc
Confidence 4699999999999998886 55877654432111 2234554555578888765543
No 123
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.44 E-value=2.4 Score=24.68 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCceEeecceecCC-eeeEEEEEECCCCCeE
Q 036243 75 MATVERKLTEMKIEYVKSRVEEGG-IYVDQVFFHDPDGSMI 114 (146)
Q Consensus 75 ~~~~~~~l~~~G~~~~~~~~~~~g-~~~~~~~~~DPdG~~i 114 (146)
+..+.+-|...|+.+........| .....||+.|.+|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 446678888999999888766654 4568999999999876
No 124
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=86.68 E-value=5.2 Score=25.69 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=33.4
Q ss_pred CceEEEEeCCHHHHHHHHHh-cCceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 65 DNHISFQCENMATVERKLTE-MKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 65 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
..|+.+.|+|+++..+..++ .|++...... ..+ .....+. ..+..+++.++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~-~~~--~~~~~~~-~g~~~l~l~~~ 52 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHG-SED--KASYLLR-QGDINFVLNSP 52 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecC-CCc--eEEEEEE-cCCEEEEEecC
Confidence 47999999999999999998 8988765422 111 1333443 34455666553
No 125
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=86.54 E-value=7.2 Score=25.99 Aligned_cols=52 Identities=8% Similarity=0.054 Sum_probs=35.8
Q ss_pred CCceEEEEeCCHHHHHHHHHh-cCceEeecceecCCeeeEEEEEEC-CCCCeEEEEeeC
Q 036243 64 KDNHISFQCENMATVERKLTE-MKIEYVKSRVEEGGIYVDQVFFHD-PDGSMIEICNCD 120 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~g~~~~~~~~~D-PdG~~iel~~~~ 120 (146)
|..|+++.|+|+++..+...+ .|.++..... +. ..++..+ .++..|++....
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~~--~~~~~~~~~~~~~l~l~~~~ 54 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---DR--VRLEEGGGGPGAVVDVLEEP 54 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---CE--EEEEecCCCCCCEEEEEeCC
Confidence 578999999999999998876 4887764421 11 2222222 358899998853
No 126
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=83.71 E-value=7.9 Score=23.75 Aligned_cols=56 Identities=14% Similarity=0.174 Sum_probs=36.8
Q ss_pred CceEEEEeCCHHHHHHHHHhc-CceEeecceecCCeeeEEEEEECCC---CCeEEEEeeCC
Q 036243 65 DNHISFQCENMATVERKLTEM-KIEYVKSRVEEGGIYVDQVFFHDPD---GSMIEICNCDV 121 (146)
Q Consensus 65 ~~hl~~~v~d~~~~~~~l~~~-G~~~~~~~~~~~g~~~~~~~~~DPd---G~~iel~~~~~ 121 (146)
..|+++.|+|+++..+..... |++.........+ ....+++..++ +..+++.....
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~ 60 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEG-KFTLVFLGYPDEDSEGVLELTYNWG 60 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCC-ceEEEEecCCCCCCccEEEEEecCC
Confidence 369999999999999999865 9887654321211 11334455444 57888876443
No 127
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=82.03 E-value=8.9 Score=23.78 Aligned_cols=53 Identities=8% Similarity=0.087 Sum_probs=34.4
Q ss_pred CceEEEEeCCHHHHHHHHHh-cCceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 65 DNHISFQCENMATVERKLTE-MKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 65 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
+.|+++.|+|+++..+..+. .|........ ....+ ...++..+.+..++|.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~-~~~~~-~~~~~~~~~~~~i~l~~~ 55 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYEDVLGAHVSHIEE-VPEQG-VKVVFIALGNTKVELLEP 55 (128)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhCCCCcccee-CCCCC-cEEEEEecCCEEEEEEec
Confidence 67999999999999998874 6887654321 11111 233333344668898864
No 128
>PLN02367 lactoylglutathione lyase
Probab=80.61 E-value=3.5 Score=29.78 Aligned_cols=31 Identities=16% Similarity=0.491 Sum_probs=27.2
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeecC
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRRP 39 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~ 39 (146)
.+++|++|.|.|++++.+..++ .|.++....
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~P 198 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKKP 198 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeCC
Confidence 4799999999999999999987 999887543
No 129
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=80.25 E-value=11 Score=23.25 Aligned_cols=51 Identities=2% Similarity=0.087 Sum_probs=35.5
Q ss_pred CCceEEEEeCCHHHHHHHHHh-cCceEeecceecCCeeeEEEEEECCC-CCeEEEEeeCC
Q 036243 64 KDNHISFQCENMATVERKLTE-MKIEYVKSRVEEGGIYVDQVFFHDPD-GSMIEICNCDV 121 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~g~~~~~~~~~DPd-G~~iel~~~~~ 121 (146)
++.|+.+.|+|+++..+.... .|.++.... + ..+++...+ +..+.+...+.
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~----~~~~l~~~~~~~~l~l~~~~~ 54 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERT---D----STAVLGTGGKRPLLVLEEDPD 54 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C----CEEEEecCCCeEEEEEEeCCC
Confidence 467999999999999999986 688886552 1 223444443 56777776543
No 130
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=80.03 E-value=17 Score=25.16 Aligned_cols=34 Identities=6% Similarity=-0.025 Sum_probs=27.1
Q ss_pred CCCCCCceEEEEeCCHHHHHHHHH-hcCceEeecc
Q 036243 60 IINPKDNHISFQCENMATVERKLT-EMKIEYVKSR 93 (146)
Q Consensus 60 ~~~~~~~hl~~~v~d~~~~~~~l~-~~G~~~~~~~ 93 (146)
..+-...|.++.|.|+++..+... ..|.++....
T Consensus 23 ~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~ 57 (185)
T PLN03042 23 TKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRL 57 (185)
T ss_pred CCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEE
Confidence 344567899999999999999886 5698876663
No 131
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.60 E-value=8.9 Score=22.49 Aligned_cols=47 Identities=19% Similarity=0.406 Sum_probs=33.9
Q ss_pred EEEEeCCHH----HHHHHHHhcCceEeecceecCC-eeeEEEEEECCCCCeE
Q 036243 68 ISFQCENMA----TVERKLTEMKIEYVKSRVEEGG-IYVDQVFFHDPDGSMI 114 (146)
Q Consensus 68 l~~~v~d~~----~~~~~l~~~G~~~~~~~~~~~g-~~~~~~~~~DPdG~~i 114 (146)
+.+.+.|.. .+..-|...|+.+........| ....+||+.|.+|..+
T Consensus 4 veV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 4 VTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred EEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 344455533 4557788889999888766655 3568999999999866
No 132
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=78.41 E-value=12 Score=22.55 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=34.6
Q ss_pred eEEEEeCCHHHHHHHHHh-cCceEeecceecCCeeeEEEEEECCCC--CeEEEEee
Q 036243 67 HISFQCENMATVERKLTE-MKIEYVKSRVEEGGIYVDQVFFHDPDG--SMIEICNC 119 (146)
Q Consensus 67 hl~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~g~~~~~~~~~DPdG--~~iel~~~ 119 (146)
|+++.|.|+++..+..++ .|+++........+ ...+.+.++++ ..+++...
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~ 54 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGG--FRWVTVAPPGSPETSLVLAPP 54 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCC--cEEEEEeCCCCCeeEEEEeCC
Confidence 889999999999999987 79888755321122 24556666654 45665543
No 133
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=76.41 E-value=1.1 Score=23.49 Aligned_cols=26 Identities=12% Similarity=0.399 Sum_probs=21.1
Q ss_pred cceeeEEEEEcCCHHHHHHHHHHhhC
Q 036243 7 LKSLNHFSLVCRSVEKSLDFYQNVIG 32 (146)
Q Consensus 7 ~~~i~hv~l~v~D~~~a~~Fy~~~Lg 32 (146)
+..++-.++++++.++..+||+.+|.
T Consensus 9 igp~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 9 IGPVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred cCccccCCCccccccchhHHHHHHHH
Confidence 34556678888999999999999874
No 134
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=76.02 E-value=8.4 Score=24.60 Aligned_cols=30 Identities=7% Similarity=0.113 Sum_probs=24.5
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHh--hCCeeee
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNV--IGFLPIR 37 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~--Lg~~~~~ 37 (146)
.+++|+++.|.|+++..+++..+ .|.++..
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~ 92 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGW 92 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCcccc
Confidence 67999999999999999888776 4665543
No 135
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.94 E-value=8.7 Score=20.89 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.3
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcCceE
Q 036243 63 PKDNHISFQCENMATVERKLTEMKIEY 89 (146)
Q Consensus 63 ~~~~hl~~~v~d~~~~~~~l~~~G~~~ 89 (146)
.+...+.|.+++.+.+.+.|+++|+++
T Consensus 38 ~~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 38 GGKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CCeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 356778999999999999999999875
No 136
>PRK10291 glyoxalase I; Provisional
Probab=73.61 E-value=11 Score=23.75 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=24.1
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeee
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIR 37 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~ 37 (146)
.+++|++|.|.|++++.+-.++ .|.++..
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~ 92 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTR 92 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCcccc
Confidence 3688999999999998888876 7887664
No 137
>PRK11700 hypothetical protein; Provisional
Probab=72.81 E-value=29 Score=24.18 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=22.7
Q ss_pred cceeeEEEEEcCCHHHHHHHHHHhhCC
Q 036243 7 LKSLNHFSLVCRSVEKSLDFYQNVIGF 33 (146)
Q Consensus 7 ~~~i~hv~l~v~D~~~a~~Fy~~~Lg~ 33 (146)
-..++|+++.|.+.+.|.+|-+..+..
T Consensus 37 ~~~~DHialR~n~~~tAe~w~~~l~~~ 63 (187)
T PRK11700 37 QLEADHIALRCNQNETAERWRQGFLQC 63 (187)
T ss_pred cccCcEEEEeeCCHHHHHHHHHHHHHh
Confidence 346899999999999999998886644
No 138
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=72.02 E-value=25 Score=23.12 Aligned_cols=30 Identities=3% Similarity=0.083 Sum_probs=25.1
Q ss_pred CCCCceEEEEeCCHHHHHHHHHh-cCceEee
Q 036243 62 NPKDNHISFQCENMATVERKLTE-MKIEYVK 91 (146)
Q Consensus 62 ~~~~~hl~~~v~d~~~~~~~l~~-~G~~~~~ 91 (146)
..+..|+++.|+|+++..+-... .|+.+..
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~ 37 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSD 37 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEE
Confidence 45789999999999999988876 6887654
No 139
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=69.15 E-value=28 Score=22.48 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=24.0
Q ss_pred CCceEEEEeCCHHHHHHHHH-hcCceEeec
Q 036243 64 KDNHISFQCENMATVERKLT-EMKIEYVKS 92 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~-~~G~~~~~~ 92 (146)
...|+++.|.|+++..+--. ..|.+....
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~ 31 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRH 31 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEee
Confidence 46799999999999999885 579987553
No 140
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=68.09 E-value=25 Score=21.57 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=31.6
Q ss_pred CceEEEEeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEe
Q 036243 65 DNHISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 65 ~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 118 (146)
..|+++.|+|+++..+-.+..|.+...... .. ..+.+.-++|..+.+..
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~LGf~~~~~~~---~~--~~~~~~~~~~~~l~l~~ 49 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRRLGFDFPEEAD---DE--PHVEAVLPGGVRLAWDT 49 (122)
T ss_pred CceEEEEeccHHHHHHHHHHhCceecCCcC---CC--CcEEEEeCCCEEEEEEc
Confidence 368999999999999988878987643321 10 22334445565665543
No 141
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.37 E-value=17 Score=20.29 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=22.3
Q ss_pred CCceEEEEeC--CHHHHHHHHHhcCceEeec
Q 036243 64 KDNHISFQCE--NMATVERKLTEMKIEYVKS 92 (146)
Q Consensus 64 ~~~hl~~~v~--d~~~~~~~l~~~G~~~~~~ 92 (146)
+...+.|.++ +.+.+.+.|+++|+++..+
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 4555666664 8889999999999988654
No 142
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=66.29 E-value=37 Score=22.78 Aligned_cols=24 Identities=8% Similarity=0.274 Sum_probs=21.3
Q ss_pred eeEEEEEcCCHHHHHHHHHHhhCC
Q 036243 10 LNHFSLVCRSVEKSLDFYQNVIGF 33 (146)
Q Consensus 10 i~hv~l~v~D~~~a~~Fy~~~Lg~ 33 (146)
++|++|.|.+.+.+.+|-+..+..
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~ 25 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQC 25 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHh
Confidence 689999999999999998887654
No 143
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=65.91 E-value=9.4 Score=25.19 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=23.1
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHh--hCCeeee
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNV--IGFLPIR 37 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~--Lg~~~~~ 37 (146)
.+++|+++.|.|++++...+..+ .|+++..
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~ 97 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVW 97 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEee
Confidence 57999999999999998555542 5776654
No 144
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=64.68 E-value=18 Score=27.25 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=23.2
Q ss_pred CCCCCceEEEEe------CCHHHHHHHHHhcCceEe
Q 036243 61 INPKDNHISFQC------ENMATVERKLTEMKIEYV 90 (146)
Q Consensus 61 ~~~~~~hl~~~v------~d~~~~~~~l~~~G~~~~ 90 (146)
.+...+|+.+.| .|++++.+.++++|++..
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 467889999999 999999999999999887
No 145
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=64.36 E-value=30 Score=21.05 Aligned_cols=28 Identities=7% Similarity=0.248 Sum_probs=24.1
Q ss_pred CCceEEEEeCCHHHHHHHHHhcCceEee
Q 036243 64 KDNHISFQCENMATVERKLTEMKIEYVK 91 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~~~G~~~~~ 91 (146)
++.|+++.|.|+++..+.....|.....
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~ 29 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVRE 29 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEe
Confidence 5789999999999999988878887754
No 146
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=63.76 E-value=35 Score=21.61 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=23.7
Q ss_pred CCCceEEEEeCCHHHHHHHHHh-cCceEee
Q 036243 63 PKDNHISFQCENMATVERKLTE-MKIEYVK 91 (146)
Q Consensus 63 ~~~~hl~~~v~d~~~~~~~l~~-~G~~~~~ 91 (146)
.+..|+++.|+|+++..+...+ .|.+...
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~ 32 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVY 32 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEE
Confidence 3688999999999999988876 6876543
No 147
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=63.33 E-value=42 Score=22.41 Aligned_cols=30 Identities=7% Similarity=0.208 Sum_probs=24.8
Q ss_pred CCCceEEEEeCCHHHHHHHHHh-cCceEeec
Q 036243 63 PKDNHISFQCENMATVERKLTE-MKIEYVKS 92 (146)
Q Consensus 63 ~~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~ 92 (146)
.++.|+++.|+|+++..+...+ .|++....
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEE
Confidence 3678999999999999999974 68877544
No 148
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=62.09 E-value=33 Score=20.72 Aligned_cols=28 Identities=0% Similarity=-0.054 Sum_probs=23.4
Q ss_pred ceEEEEeCCHHHHHHHHHhc-CceEeecc
Q 036243 66 NHISFQCENMATVERKLTEM-KIEYVKSR 93 (146)
Q Consensus 66 ~hl~~~v~d~~~~~~~l~~~-G~~~~~~~ 93 (146)
.|+++.|+|+++..+..... |.++....
T Consensus 2 ~hi~l~v~d~~~s~~FY~~~lG~~~~~~~ 30 (114)
T cd07247 2 VWFELPTTDPERAKAFYGAVFGWTFEDMG 30 (114)
T ss_pred EEEEeeCCCHHHHHHHHHhccCceeeecc
Confidence 69999999999999998864 98876553
No 149
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=61.51 E-value=16 Score=23.80 Aligned_cols=32 Identities=6% Similarity=0.087 Sum_probs=23.1
Q ss_pred ccceeeEEEEEcCCHHHHHHHHHHh--hCCeeee
Q 036243 6 SLKSLNHFSLVCRSVEKSLDFYQNV--IGFLPIR 37 (146)
Q Consensus 6 ~~~~i~hv~l~v~D~~~a~~Fy~~~--Lg~~~~~ 37 (146)
...+++|+++.|.|.+...++++.+ .|.++..
T Consensus 53 ~~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~ 86 (141)
T cd07258 53 SSSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVF 86 (141)
T ss_pred CCCceEEEEEECCCHHHHHHHHHHHHHCCCcEEe
Confidence 3468999999999987766666664 4665543
No 150
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=61.25 E-value=33 Score=20.45 Aligned_cols=60 Identities=25% Similarity=0.352 Sum_probs=38.3
Q ss_pred EEeC-CHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEe-eCCCCcccccc
Q 036243 70 FQCE-NMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICN-CDVLPVVPLAG 129 (146)
Q Consensus 70 ~~v~-d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~-~~~~~~~~~~~ 129 (146)
+.|+ ++..+.+.|+++|+.+..-.......+...+.+..-+.|..-+.. ....|+.-+.|
T Consensus 4 IAVE~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G 65 (80)
T PF03698_consen 4 IAVEEGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASG 65 (80)
T ss_pred EEecCCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEecCC
Confidence 4555 889999999999999986643331122366677787877766543 23345544443
No 151
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.52 E-value=7.1 Score=27.97 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHhhCCeeeecCC
Q 036243 18 RSVEKSLDFYQNVIGFLPIRRPG 40 (146)
Q Consensus 18 ~D~~~a~~Fy~~~Lg~~~~~~~~ 40 (146)
.|+.++..||.+.||+.+....+
T Consensus 145 a~~~e~a~wy~dyLGleie~~hg 167 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGHG 167 (246)
T ss_pred hccHHHHHHHHHhcCceeeeccC
Confidence 47788899999999999886533
No 152
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=60.38 E-value=16 Score=23.80 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=25.2
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCCeeeec
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGFLPIRR 38 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~ 38 (146)
.++.|+++.|.|++++.+...+ .|.++...
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~-~G~~~~~~ 114 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRA-LGGNVVRE 114 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHH-cCCccccC
Confidence 4688999999999999999877 88876643
No 153
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=60.28 E-value=35 Score=20.54 Aligned_cols=29 Identities=3% Similarity=0.103 Sum_probs=24.8
Q ss_pred CCceEEEEeCCHHHHHHHHHh-cCceEeec
Q 036243 64 KDNHISFQCENMATVERKLTE-MKIEYVKS 92 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~ 92 (146)
+..|+.+.|+|+++..+...+ .|.+....
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~ 31 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDR 31 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEee
Confidence 468999999999999999988 68887654
No 154
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=59.75 E-value=48 Score=21.93 Aligned_cols=28 Identities=4% Similarity=0.143 Sum_probs=23.7
Q ss_pred CCceEEEEeCCHHHHHHHHHh-cCceEee
Q 036243 64 KDNHISFQCENMATVERKLTE-MKIEYVK 91 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~ 91 (146)
++.|+++.|.|+++..+-..+ .|.+...
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVSE 31 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEEE
Confidence 578999999999999988876 6887653
No 155
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=59.11 E-value=45 Score=21.32 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=32.5
Q ss_pred CCceEEEEeCCHHHHHHHHHh-cCceEeecceecCCeeeEEEEEECCCCCeEEEEee
Q 036243 64 KDNHISFQCENMATVERKLTE-MKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNC 119 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 119 (146)
+..|+++.|+|+++..+...+ .|.++.... + ...++.. .|..+.+...
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~----~---~~~~~~~-~g~~l~l~~~ 52 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYEKVLGAKLLVKG----R---KTAYFDL-NGLWIALNEE 52 (139)
T ss_pred cEEEEEEEecCHHHHHHHHHhccCCEEEeec----C---eeEEEec-CCeEEEeecc
Confidence 578999999999999998865 587765331 1 2234433 4667776544
No 156
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=55.02 E-value=51 Score=20.70 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=22.4
Q ss_pred ceEEEEeCCHHHHHHHHHh-cCceEeec
Q 036243 66 NHISFQCENMATVERKLTE-MKIEYVKS 92 (146)
Q Consensus 66 ~hl~~~v~d~~~~~~~l~~-~G~~~~~~ 92 (146)
.|+++.|+|++++.+...+ .|++....
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~ 28 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDR 28 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEE
Confidence 4999999999999998875 69887544
No 157
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=54.05 E-value=18 Score=15.92 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=9.1
Q ss_pred EEEEEECCCCCeE
Q 036243 102 DQVFFHDPDGSMI 114 (146)
Q Consensus 102 ~~~~~~DPdG~~i 114 (146)
-...++|++|++|
T Consensus 7 I~~i~~D~~G~lW 19 (24)
T PF07494_consen 7 IYSIYEDSDGNLW 19 (24)
T ss_dssp EEEEEE-TTSCEE
T ss_pred EEEEEEcCCcCEE
Confidence 3457889999887
No 158
>PRK03094 hypothetical protein; Provisional
Probab=52.47 E-value=49 Score=19.74 Aligned_cols=60 Identities=20% Similarity=0.286 Sum_probs=37.9
Q ss_pred EEeC-CHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeC-CCCcccccc
Q 036243 70 FQCE-NMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCD-VLPVVPLAG 129 (146)
Q Consensus 70 ~~v~-d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~-~~~~~~~~~ 129 (146)
+.|+ ++..+.+.|+++|+.+..-..+....+.-.+.+..-|.|...+-... ..|+.-+.|
T Consensus 4 IaVE~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~A~G 65 (80)
T PRK03094 4 IGVEQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASG 65 (80)
T ss_pred EEeecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEEcCC
Confidence 4454 88999999999999997553322111225667788888887766422 344444443
No 159
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=52.39 E-value=51 Score=19.93 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=25.6
Q ss_pred CCceEEEEeCCHHHHHHHHHh-cCceEeecc
Q 036243 64 KDNHISFQCENMATVERKLTE-MKIEYVKSR 93 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~ 93 (146)
++.|+.+.|+|+++..+..++ .|.+.....
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeeccc
Confidence 578999999999999999987 698876553
No 160
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=51.91 E-value=26 Score=24.38 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=20.6
Q ss_pred ceeeEEEEEcCCHHHHHHHHHHhhCC
Q 036243 8 KSLNHFSLVCRSVEKSLDFYQNVIGF 33 (146)
Q Consensus 8 ~~i~hv~l~v~D~~~a~~Fy~~~Lg~ 33 (146)
..++|+++.|++.+.+..|-+..+..
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~ 58 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQC 58 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTT
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHh
Confidence 46899999999999999999887755
No 161
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.38 E-value=33 Score=20.24 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=23.4
Q ss_pred CCceEEEEeCC----HHHHHHHHHhcCceEeec
Q 036243 64 KDNHISFQCEN----MATVERKLTEMKIEYVKS 92 (146)
Q Consensus 64 ~~~hl~~~v~d----~~~~~~~l~~~G~~~~~~ 92 (146)
+...+.+.+++ ++.+.+.|+++|+++...
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~ 72 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVVDL 72 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEEC
Confidence 44567788888 899999999999987643
No 162
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=50.47 E-value=28 Score=25.99 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=34.7
Q ss_pred eEEEEeC-CHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeC
Q 036243 67 HISFQCE-NMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 67 hl~~~v~-d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 120 (146)
-++..|+ ++..+.+-|++-...+...|-..+. .++..|+.++|+.+||.+..
T Consensus 160 aiS~evdDsl~~il~lLr~~D~sFrpvPh~~d~--ak~~~fqn~~~y~VefLTtn 212 (349)
T COG5397 160 AISREVDDSLPPILDLLRSVDPSFRPVPHRSDP--AKSSAFQNRDGYRVEFLTTN 212 (349)
T ss_pred hhhHHhcccccHHHHHHhccCcccccCCccCCC--ccceeeecCCCeEEEEeccC
Confidence 3455554 6777888888766666554422221 26666799999999999843
No 163
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=50.40 E-value=58 Score=20.04 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=24.2
Q ss_pred CCceEEEEeCCHHHHHHHHHh-cCceEeec
Q 036243 64 KDNHISFQCENMATVERKLTE-MKIEYVKS 92 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~~-~G~~~~~~ 92 (146)
+..|+++.|.|+++..+.... .|.+....
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccC
Confidence 567999999999999999976 59877544
No 164
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=49.37 E-value=63 Score=20.15 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=34.9
Q ss_pred CceEEEEeCCHHHHHHHHHh-cCceEeecceecCCeeeEEEEEECC--CCCeEEEEeeCC
Q 036243 65 DNHISFQCENMATVERKLTE-MKIEYVKSRVEEGGIYVDQVFFHDP--DGSMIEICNCDV 121 (146)
Q Consensus 65 ~~hl~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~g~~~~~~~~~DP--dG~~iel~~~~~ 121 (146)
..|+.+.|+|+++..+...+ .|.++..... .. ...++..+ .+..+.++..+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~-~~----~~~~~~~~~~~~~~l~l~~~~~ 56 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGP-LG----GLVFLSRDPDEHHQIALITGRP 56 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeecc-CC----cEEEEEecCCCceEEEEEecCC
Confidence 57999999999999999986 7887764421 11 22344433 356788876544
No 165
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=48.00 E-value=63 Score=19.75 Aligned_cols=50 Identities=10% Similarity=0.097 Sum_probs=32.9
Q ss_pred CceEEEEeCCHHHHHHHHHh----cCceEeecceecCCeeeEEEEEECC-CCCeEEEEeeC
Q 036243 65 DNHISFQCENMATVERKLTE----MKIEYVKSRVEEGGIYVDQVFFHDP-DGSMIEICNCD 120 (146)
Q Consensus 65 ~~hl~~~v~d~~~~~~~l~~----~G~~~~~~~~~~~g~~~~~~~~~DP-dG~~iel~~~~ 120 (146)
..|+.+.|.|+++..+..++ .|....... .. ..+.+..+ .+..+.+....
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~----~~~~~~~~~~~~~~~l~~~~ 55 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP----GAVGYGKGGGGPDFWVTKPF 55 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC----ceeEeccCCCCceEEEeccc
Confidence 36999999999999888876 487765442 11 12334444 35677776643
No 166
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=47.53 E-value=44 Score=18.39 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=20.0
Q ss_pred ceEEEEeCCHHHHHHHHHhcCceEe
Q 036243 66 NHISFQCENMATVERKLTEMKIEYV 90 (146)
Q Consensus 66 ~hl~~~v~d~~~~~~~l~~~G~~~~ 90 (146)
..+-+.++|.+.+.+.|+++|+++.
T Consensus 41 ~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 41 GILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CEEEEEECCHHHHHHHHHHCCCEEE
Confidence 4556666888899999999998763
No 167
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=45.90 E-value=44 Score=21.07 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeE
Q 036243 73 ENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMI 114 (146)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~i 114 (146)
.|++.+.+.|+++|+++.... .+|...+.++|.--+|..+
T Consensus 64 rNv~~a~~~L~~~gi~I~a~d--vGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAED--VGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEE--E-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHCCCcEEEee--CCCCCCcEEEEEcCCCEEE
Confidence 489999999999999998764 3444558888877777443
No 168
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=45.62 E-value=48 Score=22.66 Aligned_cols=42 Identities=10% Similarity=0.066 Sum_probs=31.3
Q ss_pred EEeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCe
Q 036243 70 FQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSM 113 (146)
Q Consensus 70 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~ 113 (146)
+--.|++.+.+.|++.|+++.... .+|...+.++|.--+|..
T Consensus 112 IG~rNi~~a~~~L~~~gi~i~a~D--vGG~~gR~i~f~~~tG~v 153 (167)
T PRK13498 112 VADKNIHAALALAEQNGLHLKAQD--LGSTGHRSIIFDLWNGNV 153 (167)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEe--CCCCCCcEEEEECCCCEE
Confidence 334599999999999999998663 344455888777777744
No 169
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=45.31 E-value=59 Score=22.96 Aligned_cols=49 Identities=16% Similarity=0.282 Sum_probs=32.2
Q ss_pred CCCCceEEEEeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCC
Q 036243 62 NPKDNHISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPD 110 (146)
Q Consensus 62 ~~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPd 110 (146)
+.+..++.+.-.|+.++...|+.+|+.+..-.....+.+.+.++|.-.|
T Consensus 31 g~~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~D 79 (204)
T PF12687_consen 31 GKGLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKD 79 (204)
T ss_pred CCCceEEecCHhhHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCc
Confidence 3456777777779999999999999888755422222223566665444
No 170
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=45.16 E-value=50 Score=22.40 Aligned_cols=41 Identities=20% Similarity=0.426 Sum_probs=31.3
Q ss_pred eCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeE
Q 036243 72 CENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMI 114 (146)
Q Consensus 72 v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~i 114 (146)
-.|++.+.+.|+++|+++.... .+|...+.++|.--+|..+
T Consensus 104 ~rNi~~a~~~L~~~gI~i~a~d--vGG~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 104 ARNVEAVKKHLKDFGIKLVAED--TGGNRARSIEYNIETGKLL 144 (159)
T ss_pred HHHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEEE
Confidence 3499999999999999998663 4455558888877777543
No 171
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=44.62 E-value=21 Score=17.16 Aligned_cols=18 Identities=17% Similarity=0.530 Sum_probs=13.9
Q ss_pred EcCCHHHHHHHHHHhhCC
Q 036243 16 VCRSVEKSLDFYQNVIGF 33 (146)
Q Consensus 16 ~v~D~~~a~~Fy~~~Lg~ 33 (146)
...|.++|+.+|++.|.+
T Consensus 11 ~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HCT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 456899999999998754
No 172
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=44.46 E-value=52 Score=22.37 Aligned_cols=41 Identities=27% Similarity=0.397 Sum_probs=31.0
Q ss_pred EeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCe
Q 036243 71 QCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSM 113 (146)
Q Consensus 71 ~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~ 113 (146)
--.|++.+.+.|+++|+++.... .+|...+.++|.--+|..
T Consensus 110 G~rNv~~a~~~L~~~gI~i~a~d--vGG~~gR~i~f~~~tG~v 150 (162)
T PRK13490 110 GNRNGKAVKKKLKELSIPILAED--IGGNKGRTMIFDTSDGKV 150 (162)
T ss_pred hHHHHHHHHHHHHHcCCcEEEEE--CCCCCCcEEEEECCCCEE
Confidence 33499999999999999998663 445555888877777744
No 173
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=44.32 E-value=53 Score=22.41 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=30.8
Q ss_pred eCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCe
Q 036243 72 CENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSM 113 (146)
Q Consensus 72 v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~ 113 (146)
-.|++.+.+.|+++|+++.... .+|...+.++|.--+|..
T Consensus 113 ~rNv~~a~~~L~~~gI~i~a~D--vGG~~gR~i~f~~~tG~v 152 (163)
T PRK13494 113 LENSEFAVNTLNKYGIPILAKD--FDQSKSRKIFVFPENFKV 152 (163)
T ss_pred HHHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEE
Confidence 3499999999999999998663 345555888887777744
No 174
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=42.49 E-value=36 Score=20.57 Aligned_cols=31 Identities=6% Similarity=0.166 Sum_probs=23.0
Q ss_pred CCCCceEEEEeC---CHHHHHHHHHhcCceEeec
Q 036243 62 NPKDNHISFQCE---NMATVERKLTEMKIEYVKS 92 (146)
Q Consensus 62 ~~~~~hl~~~v~---d~~~~~~~l~~~G~~~~~~ 92 (146)
..+...++|.++ +++++.++|++.|+.+..-
T Consensus 48 ~~a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~dl 81 (91)
T PF00585_consen 48 DFARVLVGIEVPDAEDLEELIERLKALGYPYEDL 81 (91)
T ss_dssp SCSEEEEEEE-SSTHHHHHHHHHHTSSS-EEECT
T ss_pred CeeeEEEEEEeCCHHHHHHHHHHHHHcCCCeEEC
Confidence 456778999997 4577899999999988755
No 175
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=41.78 E-value=34 Score=23.21 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=13.4
Q ss_pred EEEEEECCCCCeEEEEe
Q 036243 102 DQVFFHDPDGSMIEICN 118 (146)
Q Consensus 102 ~~~~~~DPdG~~iel~~ 118 (146)
..+|+.||+|.+.....
T Consensus 156 ~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 156 AFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp SEEEEE-TTSEEEEEEC
T ss_pred cEEEEEcCCCcEEEEEc
Confidence 58899999999887764
No 176
>PRK03467 hypothetical protein; Provisional
Probab=41.78 E-value=1e+02 Score=20.52 Aligned_cols=49 Identities=8% Similarity=0.094 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 73 ENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
+++..+.+.|++.-+--.-...+.+.+..--||+.|+++..+-+.+.+.
T Consensus 5 ~~~~~I~~fl~~~hvltLa~~~~~~~w~A~cFY~fd~~~~~l~~~S~~~ 53 (144)
T PRK03467 5 DTLTAISRWLAKQHVVTLCVGQEGELWCANCFYVFDAQKVAFYLLTEEK 53 (144)
T ss_pred hHHHHHHHHHHhCcEEEEEEEcCCCcceEEEEEEEcCCCeEEEEEcCCC
Confidence 3566777777777543332222222344467888899999999988665
No 177
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=41.51 E-value=62 Score=22.52 Aligned_cols=40 Identities=23% Similarity=0.177 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeE
Q 036243 73 ENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMI 114 (146)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~i 114 (146)
.|++.+.+.|+++|+++.... .+|...+.++|.--.|..+
T Consensus 112 rNi~~a~~~L~~~gI~i~a~D--vGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 112 QNAAFAMQFLRDEGIPVVGSS--TGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCeEE
Confidence 499999999999999998663 4455558888877777553
No 178
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=40.72 E-value=1e+02 Score=20.40 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=24.2
Q ss_pred eEEEEeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEEC
Q 036243 67 HISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHD 108 (146)
Q Consensus 67 hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~D 108 (146)
.+++-+-|..+..+-++.+|+.+.++....+| ..+|+..
T Consensus 37 ~~~pvc~D~~A~~k~lkr~gv~~~egl~t~~G---~~fY~Ys 75 (142)
T PF11633_consen 37 LLCPVCIDYPAFCKTLKRKGVDPKEGLQTVDG---VQFYFYS 75 (142)
T ss_dssp -EEEEETT-HHHHHHHHHTTS---SEEEES-S---SEEEEE-
T ss_pred cEEEEEeccHHHHHHHhccCcccccceEEecc---eEEEEEe
Confidence 46777778899999999999999888766555 4555543
No 179
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=39.97 E-value=36 Score=22.05 Aligned_cols=83 Identities=10% Similarity=0.133 Sum_probs=49.9
Q ss_pred eeeEEEEEcCCHHHHHHHHHHhhCCeeeecCC----CCCcCCeEEc------CCCCCC-CCC--CCCCCCceEEEEeCCH
Q 036243 9 SLNHFSLVCRSVEKSLDFYQNVIGFLPIRRPG----SFDFHGAWKY------PDRMPS-IGK--IINPKDNHISFQCENM 75 (146)
Q Consensus 9 ~i~hv~l~v~D~~~a~~Fy~~~Lg~~~~~~~~----~~~~~~~~l~------~~~~~~-~~~--~~~~~~~hl~~~v~d~ 75 (146)
.+.-+-+.|.+.+.+.+-.++ -||.+....- ..+.+|..-. ..++.. ... ...-.-.-+-+.++|+
T Consensus 41 dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~ 119 (142)
T COG4747 41 DFGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDI 119 (142)
T ss_pred CcceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHH
Confidence 456677889999999988887 7887765421 1111221110 001100 000 1111334578899999
Q ss_pred HHHHHHHHhcCceEeec
Q 036243 76 ATVERKLTEMKIEYVKS 92 (146)
Q Consensus 76 ~~~~~~l~~~G~~~~~~ 92 (146)
|+..+.|+++|+++...
T Consensus 120 d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 120 DRAIKALEDAGIKLIGM 136 (142)
T ss_pred HHHHHHHHHcCCeecCh
Confidence 99999999999988754
No 180
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=38.96 E-value=26 Score=25.13 Aligned_cols=41 Identities=15% Similarity=0.086 Sum_probs=25.3
Q ss_pred EEeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEE
Q 036243 70 FQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIE 115 (146)
Q Consensus 70 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 115 (146)
|.-.|-+.+++.+ .|+.+...+. .+ +...|+..|||||-.=
T Consensus 184 ~~~~~~~~~~~~~--~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~ 224 (228)
T PRK06704 184 IREERPELLTKLL--PTIDFTKLPS-KQ--PVLLFNVKQPSSYSCM 224 (228)
T ss_pred HHhcCHHHHHHHh--ccceeeeccc-cc--ceEEEEeeCCCccchh
Confidence 3444666666644 5666665542 12 2388999999998643
No 181
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=38.75 E-value=61 Score=19.13 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=16.4
Q ss_pred EEEcCCHHHHHHHHHHhhCCeeeec
Q 036243 14 SLVCRSVEKSLDFYQNVIGFLPIRR 38 (146)
Q Consensus 14 ~l~v~D~~~a~~Fy~~~Lg~~~~~~ 38 (146)
.....+=..|..+|++ |||+....
T Consensus 59 l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 59 LYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3344566789999998 99988753
No 182
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=38.41 E-value=67 Score=22.69 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEE
Q 036243 73 ENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIE 115 (146)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 115 (146)
.|++.+.+.|++.|+++.... .+|...+.++|.--+|..+-
T Consensus 115 rNie~a~~~L~~~GI~ivaeD--vGG~~gRkI~f~~~tG~v~v 155 (199)
T PRK13491 115 ANAAFARRYLRDEGIRCTAHS--LGGNRARRIRFWPKTGRVQQ 155 (199)
T ss_pred HHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEEEE
Confidence 499999999999999998663 44555588888877886554
No 183
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=37.82 E-value=70 Score=22.85 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCe
Q 036243 73 ENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSM 113 (146)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~ 113 (146)
.|++.+.+.|++.|+++.... .+|...+.++|.--+|..
T Consensus 139 rNi~~a~~~L~~~gI~Iva~D--vGG~~gRki~f~~~tG~v 177 (213)
T PRK13493 139 KNVEFVLEYAKREKLNVVAQD--LGGAQPRKLLFDPQTGQA 177 (213)
T ss_pred HHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEE
Confidence 499999999999999998663 345555788777667743
No 184
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=37.24 E-value=1.1e+02 Score=19.30 Aligned_cols=20 Identities=5% Similarity=0.245 Sum_probs=18.0
Q ss_pred EEEEEECCCCCeEEEEeeCC
Q 036243 102 DQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 102 ~~~~~~DPdG~~iel~~~~~ 121 (146)
+++|+.+|.+.++...++..
T Consensus 41 YSIfLde~~n~lFgy~E~~d 60 (105)
T COG3254 41 YSIFLDEEENLLFGYWEYED 60 (105)
T ss_pred eEEEecCCcccEEEEEEEcC
Confidence 88899999999999999883
No 185
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=36.98 E-value=75 Score=21.46 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=30.5
Q ss_pred EeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCe
Q 036243 71 QCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSM 113 (146)
Q Consensus 71 ~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~ 113 (146)
--.|++.+.+.|+++|+++.... .+|...+.++|.--+|..
T Consensus 105 G~rNi~~a~~~L~~~gi~i~a~d--vGG~~gR~i~f~~~tG~v 145 (157)
T PRK13488 105 GERNIESAKETLKKLGIRIVAED--VGGDYGRTVKFDLKTGKV 145 (157)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEE--cCCCCCcEEEEECCCCEE
Confidence 33599999999999999998663 344445777777767744
No 186
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=36.67 E-value=67 Score=23.35 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHhcCceEeec---ceecCCe-----eeEEEEEECCCCCeE
Q 036243 73 ENMATVERKLTEMKIEYVKS---RVEEGGI-----YVDQVFFHDPDGSMI 114 (146)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~---~~~~~g~-----~~~~~~~~DPdG~~i 114 (146)
.+..+..++|.+.|+++... +....|+ +...+++.+|||..+
T Consensus 21 ~~~p~~~~~l~~~g~~v~~~~~~p~~l~g~~~~~~~~~~i~Y~t~dg~y~ 70 (251)
T PRK11657 21 EELPAPVKALEKQGITIIKTFDAPGGLKGYAAKYQDMGVTIYLTPDGKHA 70 (251)
T ss_pred hcccHHHHHHHhCCCEEEEeecCCCCceEEEEEeCCCceEEEEcCCCCEE
Confidence 68888999999999988765 3222232 223367778888654
No 187
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=36.64 E-value=78 Score=22.37 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=31.4
Q ss_pred EEeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCe
Q 036243 70 FQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSM 113 (146)
Q Consensus 70 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~ 113 (146)
+--.|++.+.+.|+++|+++.... .+|...+.++|.--+|..
T Consensus 124 IG~rNi~~a~~~L~~~gI~iva~D--vGG~~gR~v~f~~~tG~v 165 (201)
T PRK13487 124 VGERNAEFVRDYLQTERIPIVAED--LLDIYPRKVYFFPTTGKV 165 (201)
T ss_pred chHHHHHHHHHHHHHcCCcEEEEE--CCCCCCcEEEEECCCCEE
Confidence 333599999999999999998663 445555888887777744
No 188
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=36.60 E-value=37 Score=19.04 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=16.7
Q ss_pred eeeEEEEEcC-CHHHHHHHHHHhhCCe
Q 036243 9 SLNHFSLVCR-SVEKSLDFYQNVIGFL 34 (146)
Q Consensus 9 ~i~hv~l~v~-D~~~a~~Fy~~~Lg~~ 34 (146)
++..+.+.+. +=..+..||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 4556655555 34458999987 8874
No 189
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.99 E-value=62 Score=17.98 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=20.5
Q ss_pred CCceEEEEeC---CHHHHHHHHHhcCceEe
Q 036243 64 KDNHISFQCE---NMATVERKLTEMKIEYV 90 (146)
Q Consensus 64 ~~~hl~~~v~---d~~~~~~~l~~~G~~~~ 90 (146)
...++.+.+. .++++.+.|+++|+.+.
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 4556777775 57788999999998753
No 190
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=34.73 E-value=60 Score=17.16 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=12.6
Q ss_pred EEEEEECCCCCeEEEE
Q 036243 102 DQVFFHDPDGSMIEIC 117 (146)
Q Consensus 102 ~~~~~~DPdG~~iel~ 117 (146)
-...+.||||....|.
T Consensus 29 GsY~y~~pdG~~~~V~ 44 (52)
T PF00379_consen 29 GSYSYIDPDGQTRTVT 44 (52)
T ss_pred EEEEEECCCCCEEEEE
Confidence 4667899999887765
No 191
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=34.60 E-value=1.2e+02 Score=20.83 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=20.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCceEeec
Q 036243 67 HISFQCENMATVERKLTEMKIEYVKS 92 (146)
Q Consensus 67 hl~~~v~d~~~~~~~l~~~G~~~~~~ 92 (146)
.+.+..++.+++.+.|++.|+.+...
T Consensus 46 Di~~~~~~~~~l~~~L~~~G~~ite~ 71 (174)
T PF10706_consen 46 DIFVPREDQAELRALLKELGYRITET 71 (174)
T ss_dssp EEEEEGGGHHHHHHHHHHTT-EEEEE
T ss_pred EEEEEcchhHHHHHHHHHCCCEEEEe
Confidence 45666679999999999999977654
No 192
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=34.06 E-value=1.3e+02 Score=19.44 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=34.1
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcCceEe--eccee----cCCe-e------------eEEEEEECCCCCeEEEEe
Q 036243 63 PKDNHISFQCENMATVERKLTEMKIEYV--KSRVE----EGGI-Y------------VDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 63 ~~~~hl~~~v~d~~~~~~~l~~~G~~~~--~~~~~----~~g~-~------------~~~~~~~DPdG~~iel~~ 118 (146)
.+..-+++.+++.+++.+.+++.|+.+. ..+.. ..|. + ....++.||+|..+....
T Consensus 63 ~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 63 AGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD 137 (154)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence 3566777777777777777777765432 21110 0010 0 135689999998888764
No 193
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=33.49 E-value=1.1e+02 Score=20.84 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=32.7
Q ss_pred EEEEeCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeE
Q 036243 68 ISFQCENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMI 114 (146)
Q Consensus 68 l~~~v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~i 114 (146)
+-+--.|.+.+.+.|+..|+++.... .+|...+.++|.--+|..+
T Consensus 109 m~IG~rNv~~~~~~L~~~~IpilaeD--~Gg~~gR~i~F~p~tG~v~ 153 (164)
T COG1871 109 MKIGERNVEFAKEFLKDEGIPILAED--TGGDSGRTIEFNPSTGRVR 153 (164)
T ss_pred hhhhhHHHHHHHHHHHHcCCcEEEhh--hCCCCCcEEEEecCCCcEE
Confidence 34444599999999999999998764 3444458888876677543
No 194
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=33.21 E-value=93 Score=22.57 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=30.2
Q ss_pred eCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCe
Q 036243 72 CENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSM 113 (146)
Q Consensus 72 v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~ 113 (146)
-.|++.+.+.|+..|+++.... .+|...+.++|.--+|..
T Consensus 124 ~RNieaa~~~L~~~gI~IvaeD--vGG~~gRkV~f~~~TG~v 163 (233)
T PRK13489 124 DRNADFVRRYLALERIRITAED--LQGVHPRKVAFMPRTGRA 163 (233)
T ss_pred HHHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEE
Confidence 3499999999999999998663 344455777777667744
No 195
>PF15590 Imm15: Immunity protein 15
Probab=32.72 E-value=29 Score=19.96 Aligned_cols=17 Identities=29% Similarity=0.519 Sum_probs=14.1
Q ss_pred EEEEEECC-CCCeEEEEe
Q 036243 102 DQVFFHDP-DGSMIEICN 118 (146)
Q Consensus 102 ~~~~~~DP-dG~~iel~~ 118 (146)
+..+|.|| ||..|+.+-
T Consensus 25 We~~y~DP~D~r~W~~~~ 42 (69)
T PF15590_consen 25 WETLYQDPRDGRYWEKSY 42 (69)
T ss_pred hhhhccCCCCCceeEEec
Confidence 77799999 788888875
No 196
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=32.51 E-value=61 Score=24.36 Aligned_cols=50 Identities=12% Similarity=-0.027 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCC---CCeEEEEeeCCC
Q 036243 73 ENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPD---GSMIEICNCDVL 122 (146)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPd---G~~iel~~~~~~ 122 (146)
.|++.+.++|+.+|+.-...........+..+...+++ +.++|+-+..++
T Consensus 32 Gd~EkAie~LR~kG~akA~KKa~R~AaEGli~~~~~~~~~~av~vEvN~ETDF 84 (296)
T COG0264 32 GDIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAKVDGDGKKAVLVEVNCETDF 84 (296)
T ss_pred CCHHHHHHHHHHhchHhhhhhcCcchhcceEEEEEcCCCcEEEEEEEeccccc
Confidence 49999999999999755443222211223677777787 677888776665
No 197
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=32.21 E-value=66 Score=21.87 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=19.2
Q ss_pred EEEEeCCHHHHHHHHHhcCceEeec
Q 036243 68 ISFQCENMATVERKLTEMKIEYVKS 92 (146)
Q Consensus 68 l~~~v~d~~~~~~~l~~~G~~~~~~ 92 (146)
+=+.+.|.+.+.++|++.|......
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~~ 30 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIKK 30 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCcccccc
Confidence 3456779999999999998765433
No 198
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=31.86 E-value=1.6e+02 Score=19.58 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=33.3
Q ss_pred CCceEEEEeC-CHHHHHHHHHhcCceEeeccee---------cCC-eeeEEEEEECCCCCeEE
Q 036243 64 KDNHISFQCE-NMATVERKLTEMKIEYVKSRVE---------EGG-IYVDQVFFHDPDGSMIE 115 (146)
Q Consensus 64 ~~~hl~~~v~-d~~~~~~~l~~~G~~~~~~~~~---------~~g-~~~~~~~~~DPdG~~ie 115 (146)
++.-+++.++ +.+++.+.+++.++.+...+.. ..+ .+.-..++.||+|..+.
T Consensus 65 ~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 65 QLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEEe
Confidence 4667777777 5666778888888553221111 111 24578899999998764
No 199
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=31.76 E-value=1.3e+02 Score=18.62 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCC
Q 036243 73 ENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGS 112 (146)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~ 112 (146)
.+.+.+.++|+++++-.........+....+++.++..|.
T Consensus 36 ~~~~~i~~~L~~~nI~~iA~~~~~~~~~~~y~s~~~~~~~ 75 (114)
T PF09066_consen 36 PSPDAIEEKLQANNIFTIASGKVDNGQKFFYFSAKTTNGI 75 (114)
T ss_dssp --HHHHHHHHHCTT-EEEEEEECTT-EEEEEEEEEBTTS-
T ss_pred CcHHHHHHHHHHCCEEEEecCCCCccccEEEEEEEcCCCc
Confidence 4899999999999997776643333343455566666653
No 200
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.97 E-value=1.1e+02 Score=17.77 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCceEeeccee--cCCe-eeEEEEEECCCCCe
Q 036243 76 ATVERKLTEMKIEYVKSRVE--EGGI-YVDQVFFHDPDGSM 113 (146)
Q Consensus 76 ~~~~~~l~~~G~~~~~~~~~--~~g~-~~~~~~~~DPdG~~ 113 (146)
..+.+-+...|+.+...... ..|. ....||+ |.+|..
T Consensus 15 ~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~k 54 (75)
T cd04896 15 YDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKK 54 (75)
T ss_pred HHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCc
Confidence 35567788889999888776 5553 5578888 888876
No 201
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=30.88 E-value=69 Score=17.54 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=13.8
Q ss_pred EEEEEECCCCCeEEEEeeCCC
Q 036243 102 DQVFFHDPDGSMIEICNCDVL 122 (146)
Q Consensus 102 ~~~~~~DPdG~~iel~~~~~~ 122 (146)
..|.|.|.+|+++.+--.+-+
T Consensus 10 s~F~FYDen~~lVrv~vrD~L 30 (54)
T PF12142_consen 10 SSFLFYDENGQLVRVKVRDVL 30 (54)
T ss_dssp -EEEEE-TTS-EEEEEGGGHT
T ss_pred CeeEEECCCCCEEEEEhhhcc
Confidence 467888999999998765443
No 202
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.61 E-value=1.1e+02 Score=17.52 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=31.3
Q ss_pred EEEEeCCH----HHHHHHHHhcCceEeecceec--CCeeeEEEEEECCCCC
Q 036243 68 ISFQCENM----ATVERKLTEMKIEYVKSRVEE--GGIYVDQVFFHDPDGS 112 (146)
Q Consensus 68 l~~~v~d~----~~~~~~l~~~G~~~~~~~~~~--~g~~~~~~~~~DPdG~ 112 (146)
+.+.+.|. ..+..-|.+.|+.+....... .|...-.|++.|++|.
T Consensus 3 ~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 3 LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL 53 (76)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence 44555553 355677888899988865542 4556689999999876
No 203
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=30.28 E-value=77 Score=20.77 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=21.2
Q ss_pred eEEEEEcC-CHHHHHHHHHHhhCCeeeecC
Q 036243 11 NHFSLVCR-SVEKSLDFYQNVIGFLPIRRP 39 (146)
Q Consensus 11 ~hv~l~v~-D~~~a~~Fy~~~Lg~~~~~~~ 39 (146)
..+.|.|. +=..|+.||++ +||+.....
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~-~GF~~~~~~ 155 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRK-LGFEVVKIR 155 (177)
T ss_pred ceEEEEEecCChHHHHHHHH-cCCEEEeee
Confidence 56666666 44599999999 999987653
No 204
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.92 E-value=97 Score=16.61 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=17.6
Q ss_pred ceEEEEeCC---HHHHHHHHHhcCceEe
Q 036243 66 NHISFQCEN---MATVERKLTEMKIEYV 90 (146)
Q Consensus 66 ~hl~~~v~d---~~~~~~~l~~~G~~~~ 90 (146)
.++.+.+.+ ++.+.+.++++|+++.
T Consensus 45 ~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 45 VELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 345555554 4588999999998764
No 205
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=29.17 E-value=46 Score=18.80 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=15.1
Q ss_pred EEEEEcCCHHHHHHHHHHhhCCee
Q 036243 12 HFSLVCRSVEKSLDFYQNVIGFLP 35 (146)
Q Consensus 12 hv~l~v~D~~~a~~Fy~~~Lg~~~ 35 (146)
++.+.+ -..+.+||++ +||+.
T Consensus 59 ~i~l~~--~~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 59 KIFLFT--NPAAIKFYEK-LGFEE 79 (79)
T ss_dssp EEEEEE--EHHHHHHHHH-TTEEE
T ss_pred cEEEEE--cHHHHHHHHH-CcCCC
Confidence 445555 3689999998 99863
No 206
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.92 E-value=1.2e+02 Score=17.85 Aligned_cols=30 Identities=10% Similarity=0.235 Sum_probs=23.6
Q ss_pred CCCceEEEEeC--CHHHHHHHHHhcCceEeec
Q 036243 63 PKDNHISFQCE--NMATVERKLTEMKIEYVKS 92 (146)
Q Consensus 63 ~~~~hl~~~v~--d~~~~~~~l~~~G~~~~~~ 92 (146)
.+...+++.++ +++++.++|++.|+.+..-
T Consensus 40 ~a~vlvGi~~~~~~~~~l~~~l~~~g~~~~dl 71 (81)
T cd04907 40 YGRVLVGIQVPDADLDELKERLDALGYPYQEE 71 (81)
T ss_pred ceeEEEEEEeChHHHHHHHHHHHHcCCCeEEC
Confidence 35677888876 6788999999999887654
No 207
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=28.81 E-value=41 Score=24.08 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=14.1
Q ss_pred EEEEEECCCCCeEEEEe
Q 036243 102 DQVFFHDPDGSMIEICN 118 (146)
Q Consensus 102 ~~~~~~DPdG~~iel~~ 118 (146)
+.+.+..|||+++++--
T Consensus 6 raltvFSPDGhL~QVEY 22 (249)
T KOG0183|consen 6 RALTVFSPDGHLFQVEY 22 (249)
T ss_pred cceEEECCCCCEEeeHh
Confidence 67789999999998743
No 208
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=28.27 E-value=82 Score=19.84 Aligned_cols=49 Identities=12% Similarity=0.014 Sum_probs=30.0
Q ss_pred eCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeC
Q 036243 72 CENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCD 120 (146)
Q Consensus 72 v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 120 (146)
+.+....+++|+..|.............+.-.+...|++|..++-..-.
T Consensus 23 ik~f~~~~~~l~~~G~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M~ 71 (109)
T PF06923_consen 23 IKNFNKAYKELRKKGRVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIMK 71 (109)
T ss_pred HHHHHHHHHHHHhCCcEEEeeecCcccCCeEEEEEECCCCcEEEEEEEe
Confidence 3466778889998884333221111122446778889999888765533
No 209
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.11 E-value=63 Score=21.25 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=23.5
Q ss_pred HHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeE
Q 036243 77 TVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMI 114 (146)
Q Consensus 77 ~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~i 114 (146)
-+..+++.+|+.+.....+.. .+-.-+.||||+.+
T Consensus 23 Yls~klkkkgf~v~VaateAa---~kLlevaD~ek~Y~ 57 (148)
T COG4081 23 YLSHKLKKKGFDVTVAATEAA---LKLLEVADPEKYYV 57 (148)
T ss_pred HHHHHhhccCccEEEecCHhh---heeeeeeCcccchh
Confidence 445788888887776654433 26777788888654
No 210
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=27.77 E-value=93 Score=19.96 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=21.5
Q ss_pred eeeEEEEEcC-CHHHHHHHHHHhhCCeeeecC
Q 036243 9 SLNHFSLVCR-SVEKSLDFYQNVIGFLPIRRP 39 (146)
Q Consensus 9 ~i~hv~l~v~-D~~~a~~Fy~~~Lg~~~~~~~ 39 (146)
+++.+.+.|. +=..|.+||++ +||+.....
T Consensus 112 ~~~~i~l~v~~~N~~a~~~y~k-~GF~~~g~~ 142 (162)
T PRK10140 112 RVDRIELTVFVDNAPAIKVYKK-YGFEIEGTG 142 (162)
T ss_pred CccEEEEEEEcCCHHHHHHHHH-CCCEEEeec
Confidence 4566666653 45578999987 999987653
No 211
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=27.54 E-value=2e+02 Score=21.18 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEE
Q 036243 75 MATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIE 115 (146)
Q Consensus 75 ~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 115 (146)
.+++.+.++++|+++... ..-+-++++.|||++.+=
T Consensus 150 ~~~i~k~wk~rgi~F~~~-----k~slISV~~h~~d~~~lF 185 (250)
T PF14133_consen 150 AEKIQKYWKERGIKFNND-----KASLISVFLHDPDDNSLF 185 (250)
T ss_pred HHHHHHHHHHcCceeCCC-----ceEEEEEEEEcCCCCeEE
Confidence 456678888999999222 123367788888876654
No 212
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.48 E-value=1.8e+02 Score=22.55 Aligned_cols=82 Identities=6% Similarity=0.013 Sum_probs=46.4
Q ss_pred eeEEEEEcCCHHHHHHHHHHhhCCe-eeecCC------CCCcCCeEEcCCCCCCCC------CCCCCCCc--eEEEEeCC
Q 036243 10 LNHFSLVCRSVEKSLDFYQNVIGFL-PIRRPG------SFDFHGAWKYPDRMPSIG------KIINPKDN--HISFQCEN 74 (146)
Q Consensus 10 i~hv~l~v~D~~~a~~Fy~~~Lg~~-~~~~~~------~~~~~~~~l~~~~~~~~~------~~~~~~~~--hl~~~v~d 74 (146)
..=+++..+++++|++|=+. +++. ...... ....+-.++......... +....-+. -+|..+++
T Consensus 33 ~~Ivava~~s~~~A~~fAq~-~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e 111 (351)
T KOG2741|consen 33 HQIVAVADPSLERAKEFAQR-HNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAE 111 (351)
T ss_pred cEEEEEecccHHHHHHHHHh-cCCCCCccccCHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHH
Confidence 34467778899999999987 8883 111111 223444555311111000 00011111 15566678
Q ss_pred HHHHHHHHHhcCceEeec
Q 036243 75 MATVERKLTEMKIEYVKS 92 (146)
Q Consensus 75 ~~~~~~~l~~~G~~~~~~ 92 (146)
++++++.++++|+.+..+
T Consensus 112 ~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 112 AEEIVEAAEARGVFFMEG 129 (351)
T ss_pred HHHHHHHHHHcCcEEEee
Confidence 999999999999877665
No 213
>PF11520 Cren7: Chromatin protein Cren7; InterPro: IPR020906 Cren7 is a chromatin protein found in Crenarchaeota and has a higher affinity for double-stranded DNA than for single-stranded DNA. The protein contains negative DNA supercoils and is associated with genomic DNA in vivo. Cren7 interacts with duplex DNA through a beta-sheet and a long flexible loop. Its binding to double-stranded DNA is without sequence specificity. There is approximately 1 Cren7 molecule for 12 bp of DNA. The function of Cren7 has not been completely determined but it is thought that the protein may have a role similar to that of archaeal proteins in Euryarchaea [].; GO: 0003690 double-stranded DNA binding, 0005737 cytoplasm; PDB: 3KXT_A 3LWH_A 3LWI_A 2JTM_A.
Probab=27.10 E-value=1.2e+02 Score=16.87 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=11.8
Q ss_pred eeEEEEEECCC-CCeEEEEee
Q 036243 100 YVDQVFFHDPD-GSMIEICNC 119 (146)
Q Consensus 100 ~~~~~~~~DPd-G~~iel~~~ 119 (146)
|.....|+||+ |..+.=.-.
T Consensus 36 GV~igLFk~P~tGk~fR~~v~ 56 (60)
T PF11520_consen 36 GVKIGLFKDPETGKYFRKKVP 56 (60)
T ss_dssp -EEEEEEE-TTT--EEEEEE-
T ss_pred ceEEEEEeCCCCCcchhhhcc
Confidence 66888999999 988865543
No 214
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.08 E-value=1.3e+02 Score=17.09 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=22.1
Q ss_pred CCceEEEEeC--CHHHHHHHHHhcCceEee
Q 036243 64 KDNHISFQCE--NMATVERKLTEMKIEYVK 91 (146)
Q Consensus 64 ~~~hl~~~v~--d~~~~~~~l~~~G~~~~~ 91 (146)
....+++.++ |.+.+.+.|+++|+.+..
T Consensus 39 ~~CG~al~~~~~d~~~i~~~l~~~~i~~~~ 68 (73)
T PF11823_consen 39 AGCGLALRFEPEDLEKIKEILEENGIEYEG 68 (73)
T ss_pred CCCCEEEEEChhhHHHHHHHHHHCCCCeeE
Confidence 4467777774 899999999999987753
No 215
>PF10061 DUF2299: Uncharacterized conserved protein (DUF2299); InterPro: IPR018747 Members of this family of hypothetical bacterial proteins have no known function. ; PDB: 3CXJ_D.
Probab=26.59 E-value=1.9e+02 Score=19.01 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=27.5
Q ss_pred HHHHHHHhcCceEeecceecCCeeeEEEEEECCC-CCeEEEEeeCCCC
Q 036243 77 TVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPD-GSMIEICNCDVLP 123 (146)
Q Consensus 77 ~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPd-G~~iel~~~~~~~ 123 (146)
++.++|.+.|..+...+. .. ..+.+.+.=|- |..+.++.+...+
T Consensus 1 ~I~~WL~eeG~~~~~~~~-~~--~~fh~~v~~P~~~~~~~Vi~P~~~~ 45 (138)
T PF10061_consen 1 EIENWLKEEGLKVEEPPD-AN--AYFHILVSPPQGGVVVDVIRPKDKS 45 (138)
T ss_dssp HHHHHHHHTT-EEEE----TT--EEEEEEEE-ST-T-EEEEEEETT-S
T ss_pred ChHHHHHhcCceEecCCC-CC--ceEEEEEeCCCCCceEEEEeECCCC
Confidence 367899999999987542 22 22666777776 8999999977653
No 216
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.16 E-value=71 Score=17.50 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=16.8
Q ss_pred eEEEEe---CCHHHHHHHHHhcCceE
Q 036243 67 HISFQC---ENMATVERKLTEMKIEY 89 (146)
Q Consensus 67 hl~~~v---~d~~~~~~~l~~~G~~~ 89 (146)
.+.+.+ ++.+++.+.|+++|+++
T Consensus 44 ~~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 44 ILRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCcC
Confidence 344555 37789999999999853
No 217
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=25.95 E-value=70 Score=14.64 Aligned_cols=15 Identities=27% Similarity=0.696 Sum_probs=12.2
Q ss_pred cCCHHHHHHHHHHhh
Q 036243 17 CRSVEKSLDFYQNVI 31 (146)
Q Consensus 17 v~D~~~a~~Fy~~~L 31 (146)
-.|..++..||+..-
T Consensus 18 ~~d~~~A~~~~~~Aa 32 (36)
T smart00671 18 KKDLEKALEYYKKAA 32 (36)
T ss_pred CcCHHHHHHHHHHHH
Confidence 369999999998753
No 218
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.68 E-value=1.5e+02 Score=20.89 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCCCceEEEEeCCHHHHHHHHHh---c-Cce-----Eeecce-----------ecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 62 NPKDNHISFQCENMATVERKLTE---M-KIE-----YVKSRV-----------EEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 62 ~~~~~hl~~~v~d~~~~~~~l~~---~-G~~-----~~~~~~-----------~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
..+..-+++.+|+...-.++... . |+. +...+. +..|...+..++.||+|. |..+...+
T Consensus 65 ~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~-ir~~~v~~ 143 (194)
T COG0450 65 KRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGV-IRHILVNP 143 (194)
T ss_pred HcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCe-EEEEEEec
Confidence 34566788888876655555444 3 321 111111 112335799999999994 44444333
No 219
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=25.61 E-value=87 Score=20.27 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=21.8
Q ss_pred CCceEEEEeCCHHHHHHHHHhcCceEe
Q 036243 64 KDNHISFQCENMATVERKLTEMKIEYV 90 (146)
Q Consensus 64 ~~~hl~~~v~d~~~~~~~l~~~G~~~~ 90 (146)
...|+-+.-+|++++.+.|++.|..+.
T Consensus 101 dtDhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 101 DTDHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred cCceEEEehhhHHHHHHHHHHcCCccc
Confidence 345777777899999999999998763
No 220
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=25.60 E-value=1e+02 Score=23.30 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=21.6
Q ss_pred ceeeEEEEEc------CCHHHHHHHHHHhhCCeeeec
Q 036243 8 KSLNHFSLVC------RSVEKSLDFYQNVIGFLPIRR 38 (146)
Q Consensus 8 ~~i~hv~l~v------~D~~~a~~Fy~~~Lg~~~~~~ 38 (146)
..++|+...| .|+++..++.++ .|+.....
T Consensus 183 ~~~NH~T~~v~~l~~~~dI~~v~~~l~~-~G~~~n~~ 218 (302)
T PF07063_consen 183 YHINHFTPRVNRLKKFLDIDAVNAFLKE-RGIPMNDS 218 (302)
T ss_dssp CS-SEEEEETTT-TT-S-HHHHHHHHHH-TT--B--T
T ss_pred cccceeeceeecccccccHHHHHHHHHH-cCCCcccc
Confidence 4689999999 999999999988 99988843
No 221
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.55 E-value=2.3e+02 Score=24.72 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=41.0
Q ss_pred CCceEEEEeCC----HHHHHHHHHhcCceEeeccee--cCCeeeEEEEEECCCCCeEE
Q 036243 64 KDNHISFQCEN----MATVERKLTEMKIEYVKSRVE--EGGIYVDQVFFHDPDGSMIE 115 (146)
Q Consensus 64 ~~~hl~~~v~d----~~~~~~~l~~~G~~~~~~~~~--~~g~~~~~~~~~DPdG~~ie 115 (146)
+...+.+..+| +..+...+.++|..+...-.- ..|+...++.+.||+|..++
T Consensus 683 ~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~ 740 (867)
T COG2844 683 GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE 740 (867)
T ss_pred CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc
Confidence 66788888888 667778888889888766432 35667789999999998887
No 222
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=24.83 E-value=2e+02 Score=19.59 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=25.3
Q ss_pred CCCCceEEEEeC--CHHHHHHHHHhcCceEeec
Q 036243 62 NPKDNHISFQCE--NMATVERKLTEMKIEYVKS 92 (146)
Q Consensus 62 ~~~~~hl~~~v~--d~~~~~~~l~~~G~~~~~~ 92 (146)
.+...++++... |+..+..+|++.|..+..-
T Consensus 103 ~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~ 135 (160)
T TIGR00288 103 NPNIDAVALVTRDADFLPVINKAKENGKETIVI 135 (160)
T ss_pred cCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEE
Confidence 456788999886 7889999999999877644
No 223
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=24.80 E-value=46 Score=17.84 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=15.0
Q ss_pred EEEcC---CHHHHHHHHHHhhC
Q 036243 14 SLVCR---SVEKSLDFYQNVIG 32 (146)
Q Consensus 14 ~l~v~---D~~~a~~Fy~~~Lg 32 (146)
++++. ++++..+||+++|.
T Consensus 16 giPi~~rs~v~~~~dWYk~Mfk 37 (50)
T smart00459 16 GIPQAPRSSVERPKDWYRTMFK 37 (50)
T ss_pred CCccccccCcccHHHHHHHHHH
Confidence 45555 78999999999885
No 224
>PF12280 BSMAP: Brain specific membrane anchored protein; InterPro: IPR022065 This family of proteins is found in eukaryotes. Proteins in this family are typically between 285 and 331 amino acids in length. BSMAP has a putative transmembrane domain and is predicted to be a type I membrane glycoprotein.
Probab=24.60 E-value=1.1e+02 Score=21.70 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=20.4
Q ss_pred EEEEEECCCCCeEEEEeeCCCCccc
Q 036243 102 DQVFFHDPDGSMIEICNCDVLPVVP 126 (146)
Q Consensus 102 ~~~~~~DPdG~~iel~~~~~~~~~~ 126 (146)
+++|+++.||..+-|...+.....+
T Consensus 95 WTfYLQaDdGKvVVfQsqp~i~~~~ 119 (207)
T PF12280_consen 95 WTFYLQADDGKVVVFQSQPEIEYFP 119 (207)
T ss_pred eEEEEEcCCCCEEEEeccccceecc
Confidence 9999999999999888877654443
No 225
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=23.35 E-value=1.4e+02 Score=16.23 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=21.4
Q ss_pred CHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCCCCc
Q 036243 74 NMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDVLPV 124 (146)
Q Consensus 74 d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~~~ 124 (146)
++++-..+....|-.+.... .. ...-..+|||.++-|++......
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~~--~~----g~~aa~~pdG~lvAL~~~~g~~~ 49 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAAG--PP----GPVAAFAPDGRLVALLEERGGRA 49 (56)
T ss_dssp E--HHHHHHHHTT---B-----------S-EEEE-TTS-EEEEEEEETTEE
T ss_pred ECCHHHHHHHhCCCccCCCC--CC----ceEEEECCCCcEEEEEEccCCcE
Confidence 34455555666776665441 11 23457899999999998655433
No 226
>PF03738 GSP_synth: Glutathionylspermidine synthase preATP-grasp; InterPro: IPR005494 This region contains the Glutathionylspermidine synthase enzymatic activity 6.3.1.8 from EC. This is the C-terminal region in bienzymes such as P43675 from SWISSPROT. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design [].; PDB: 2VPM_B 2VOB_B 2VPS_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B 3O98_B.
Probab=23.26 E-value=71 Score=19.35 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCceEeecceecCCeeeE-EEEEECCCCCeEEEEee
Q 036243 76 ATVERKLTEMKIEYVKSRVEEGGIYVD-QVFFHDPDGSMIEICNC 119 (146)
Q Consensus 76 ~~~~~~l~~~G~~~~~~~~~~~g~~~~-~~~~~DPdG~~iel~~~ 119 (146)
.-+.+.++++|+....-+...-|. . .-.|.|++|..|..+-.
T Consensus 18 ~yL~~~a~qaG~~~~~~~i~~l~~--~~~g~~~d~~~~~I~~lfk 60 (97)
T PF03738_consen 18 QYLMDTARQAGLDTRFIPIEDLGW--DEDGRFYDGDGRPIDVLFK 60 (97)
T ss_dssp HHHHHHHHHTT-EEEEETTTTEEE---TTS-EEETTS-B--EEEE
T ss_pred HHHHHHHHHCCCCeEEechHheEE--CCCCcEECCCCCChheehh
Confidence 344577888898876665443222 2 33789999988888753
No 227
>PRK09831 putative acyltransferase; Provisional
Probab=23.22 E-value=1.1e+02 Score=19.65 Aligned_cols=19 Identities=16% Similarity=0.480 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhCCeeeecCC
Q 036243 21 EKSLDFYQNVIGFLPIRRPG 40 (146)
Q Consensus 21 ~~a~~Fy~~~Lg~~~~~~~~ 40 (146)
..+..||++ +||.......
T Consensus 110 ~~a~~~Y~k-~Gf~~~g~~~ 128 (147)
T PRK09831 110 ITAKPFFER-YGFQTVKQQR 128 (147)
T ss_pred hhhHHHHHH-CCCEEeeccc
Confidence 578999998 9999887654
No 228
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=23.19 E-value=1.2e+02 Score=19.47 Aligned_cols=50 Identities=8% Similarity=-0.128 Sum_probs=29.2
Q ss_pred eCCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCCeEEEEeeCC
Q 036243 72 CENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 72 v~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 121 (146)
+.+....++.|+.+|..-..........+.-.+...|.+|..++-..-.-
T Consensus 24 ik~Fn~~~~~L~~~G~V~iGr~~grf~~g~IvllaiD~~~~I~d~~~M~G 73 (118)
T PRK10234 24 ISRFNRAFDTLCQQGRVGVGRSSGRFKPRVVVALALDEQQRVVDTLFMKG 73 (118)
T ss_pred HHHHHHHHHHHHhcCceEEecccCccCCCeEEEEEECCCCcEEeeEEEcc
Confidence 34667778888888753222211111123356678899998887655433
No 229
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=23.03 E-value=1.9e+02 Score=21.52 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=16.6
Q ss_pred eeEEEEEECCCCCeEEEEeeCC
Q 036243 100 YVDQVFFHDPDGSMIEICNCDV 121 (146)
Q Consensus 100 ~~~~~~~~DPdG~~iel~~~~~ 121 (146)
..-.+|+.||+|.-+...-...
T Consensus 241 HSi~mYLidPeg~Fvd~~GrN~ 262 (280)
T KOG2792|consen 241 HSIFMYLIDPEGEFVDYYGRNY 262 (280)
T ss_pred eeEEEEEECCCcceehhhcccC
Confidence 3468899999998887765443
No 230
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=22.99 E-value=1.3e+02 Score=21.20 Aligned_cols=50 Identities=10% Similarity=0.012 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHhcCceEeecceecCCeeeEEEEEECCCCC---eEEEEeeCCC
Q 036243 73 ENMATVERKLTEMKIEYVKSRVEEGGIYVDQVFFHDPDGS---MIEICNCDVL 122 (146)
Q Consensus 73 ~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~~DPdG~---~iel~~~~~~ 122 (146)
.|++.+.++|+.+|..............+.......|+|. ++|+-....+
T Consensus 31 gd~~~A~~~lr~~g~~~a~kk~~r~~~eG~i~~~i~~~~~~~~lve~n~ETDF 83 (198)
T PRK12332 31 GDMEKAIEWLREKGLAKAAKKAGRVAAEGLVGSYIHTGGRIGVLVELNCETDF 83 (198)
T ss_pred CCHHHHHHHHHHhhhhHHHHhccccccCceEEEEEecCCCEEEEEEEeccCCc
Confidence 4899999999999976544322211111244444555554 5555554443
No 231
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=22.95 E-value=75 Score=26.10 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=23.4
Q ss_pred eEEEEEcCCHHHHHHHHHHhhCCeee
Q 036243 11 NHFSLVCRSVEKSLDFYQNVIGFLPI 36 (146)
Q Consensus 11 ~hv~l~v~D~~~a~~Fy~~~Lg~~~~ 36 (146)
.|+-|.+...++|.+||++.||..+.
T Consensus 434 ~~Lplhi~~t~~Ae~~y~~~~G~rll 459 (572)
T KOG1249|consen 434 EQLPLHIGPTEEAEAFYEKHLGTRLL 459 (572)
T ss_pred CcceeeecchhhHHHHHHHhcCCeee
Confidence 56778888999999999999999887
No 232
>PF12512 DUF3717: Protein of unknown function (DUF3717) ; InterPro: IPR022191 This family of proteins is found in bacteria. Proteins in this family are typically between 75 and 117 amino acids in length. There is a conserved AIN sequence motif. There are two completely conserved residues (L and Y) that may be functionally important.
Probab=22.87 E-value=34 Score=19.88 Aligned_cols=16 Identities=6% Similarity=0.507 Sum_probs=13.7
Q ss_pred EEEcCCHHHHHHHHHH
Q 036243 14 SLVCRSVEKSLDFYQN 29 (146)
Q Consensus 14 ~l~v~D~~~a~~Fy~~ 29 (146)
.|.+.|++.++.||+.
T Consensus 3 ~i~I~dIE~AIN~WR~ 18 (71)
T PF12512_consen 3 DISITDIEAAINYWRA 18 (71)
T ss_pred ccCHHHHHHHHHHHHh
Confidence 3667899999999987
No 233
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=22.83 E-value=88 Score=19.03 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=15.3
Q ss_pred eEEEEeC-CHHHHHHHHHhcCceEeec
Q 036243 67 HISFQCE-NMATVERKLTEMKIEYVKS 92 (146)
Q Consensus 67 hl~~~v~-d~~~~~~~l~~~G~~~~~~ 92 (146)
++.|... +++++...+.+.|+.+...
T Consensus 29 ~~~f~~~~~~~~f~~~~~~~g~~v~~~ 55 (104)
T PF06877_consen 29 WFYFEDEEDAEKFAEELEKLGYEVESA 55 (104)
T ss_dssp EEEES-HHHHHHHHHHHHHHS---B--
T ss_pred EEEeCCHHHHHHHHHHHHHCCCEEEEe
Confidence 4555443 7888899999999987654
No 234
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=22.45 E-value=89 Score=25.26 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=17.5
Q ss_pred EEEEEECCCCCeEEEEeeC-CCCccc
Q 036243 102 DQVFFHDPDGSMIEICNCD-VLPVVP 126 (146)
Q Consensus 102 ~~~~~~DPdG~~iel~~~~-~~~~~~ 126 (146)
..+.|.|||||.+.+--.. .+|-.|
T Consensus 206 A~I~l~dPdG~~~vf~r~t~~lP~pP 231 (538)
T COG1389 206 ARIVLKDPDGNLVVFPRSTDKLPKPP 231 (538)
T ss_pred eEEEEECCCCcEEEeccchhhCCCCc
Confidence 5679999999988876533 344433
No 235
>PF13225 DUF4033: Domain of unknown function (DUF4033)
Probab=22.35 E-value=1.9e+02 Score=17.49 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=19.5
Q ss_pred HHHHHHHhhCCeeeecCCCCCcCCeEE
Q 036243 23 SLDFYQNVIGFLPIRRPGSFDFHGAWK 49 (146)
Q Consensus 23 a~~Fy~~~Lg~~~~~~~~~~~~~~~~l 49 (146)
+.+||++-||+.+.-.+...++.-.++
T Consensus 49 tQ~Ff~~~~Glpl~M~PNfed~SC~~~ 75 (86)
T PF13225_consen 49 TQTFFKEEFGLPLTMEPNFEDFSCQMI 75 (86)
T ss_pred hHHHHHhccCCceEecCCCcCcEEEEE
Confidence 459999999999988766444444444
No 236
>PF00594 Gla: Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; InterPro: IPR000294 The GLA (gamma-carboxyglutamic acid-rich) domain contains glutamate residues that have been post-translationally modified by vitamin K-dependent carboxylation to form gamma-carboxyglutamate (Gla) [, , ]. All glutamic acid (Glu) residues present in the GLA domain are potential carboxylation sites; in coagulation proteins, all Gu residues are modified to Gla, while in osteocalcin and matrix Gla proteins only some Glu residues are modified to Gla. The GLA domain is responsible for the high-affinity binding of calcium ions. It starts at the N-terminal extremity of the mature form of proteins and ends with a conserved aromatic residue; a conserved Gla-x(3)-Gla-x-Cys motif [] is found in the middle of the domain which seems to be important for substrate recognition by the carboxylase. The 3D structure of the GLA domain has been solved [, ]. Calcium ions induce conformational changes in the GLA domain that and are necessary for the proper folding of the GLA domain. A common structural feature of functional GLA domains is the clustering of N-terminal hydrophobic residues into a hydrophobic patch that mediates interaction with the cell surface membrane []. Proteins known to contain a GLA domain include []: Coagulation factor X [] Coagulation factor VII [] Coagulation factor IX [] Coagulation factor XIV (vitamin K-dependent protein C) [] Vitamin K-dependent protein S [] Vitamin K-dependent protein Z [] Prothrombin Transthyretin Osteocalcin (also known as bone-Gla protein, BGP) Matrix Gla protein (MGP) [] Inter-alpha-trypsin inhibitor heavy chain H2 Growth arrest-specific protein 6 (Gas-6) [] ; GO: 0005509 calcium ion binding, 0005576 extracellular region; PDB: 1Q3M_A 1VZM_C 2PF1_A 1NL2_A 1NL1_A 2SPT_A 2PF2_A 2ZP0_L 1W0Y_L 2AEI_L ....
Probab=22.33 E-value=94 Score=15.88 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHhhC
Q 036243 19 SVEKSLDFYQNVIG 32 (146)
Q Consensus 19 D~~~a~~Fy~~~Lg 32 (146)
|...+..||...+|
T Consensus 29 ~~~~t~~fw~~Y~g 42 (42)
T PF00594_consen 29 DTEGTNAFWKKYFG 42 (42)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred ChHhHHHHHHHhcC
Confidence 56678888887665
No 237
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=22.30 E-value=91 Score=14.13 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=13.5
Q ss_pred EcCCHHHHHHHHHHhhCC
Q 036243 16 VCRSVEKSLDFYQNVIGF 33 (146)
Q Consensus 16 ~v~D~~~a~~Fy~~~Lg~ 33 (146)
.-.+.++|+..|++.|.+
T Consensus 13 ~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 13 QLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HTT-HHHHHHHHHHHHHH
T ss_pred HhCCchHHHHHHHHHHHH
Confidence 346889999999988754
No 238
>PRK10314 putative acyltransferase; Provisional
Probab=22.24 E-value=97 Score=20.40 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=16.8
Q ss_pred EEEEEcCCHHHHHHHHHHhhCCeeeec
Q 036243 12 HFSLVCRSVEKSLDFYQNVIGFLPIRR 38 (146)
Q Consensus 12 hv~l~v~D~~~a~~Fy~~~Lg~~~~~~ 38 (146)
.+.|.+. ..+..||++ +||.....
T Consensus 111 ~i~L~a~--~~a~~fY~k-~GF~~~g~ 134 (153)
T PRK10314 111 PVYLGAQ--AHLQNFYQS-FGFIPVTE 134 (153)
T ss_pred cEEEehH--HHHHHHHHH-CCCEECCC
Confidence 3444443 567899998 99987754
No 239
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=22.08 E-value=1.4e+02 Score=18.89 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=21.0
Q ss_pred eeeEEEEEcC-CHHHHHHHHHHhhCCeeeec
Q 036243 9 SLNHFSLVCR-SVEKSLDFYQNVIGFLPIRR 38 (146)
Q Consensus 9 ~i~hv~l~v~-D~~~a~~Fy~~~Lg~~~~~~ 38 (146)
++.++.+.|. +=..+.+||++ +||+....
T Consensus 96 ~~~~~~~~~~~~N~~a~~~y~k-~Gf~~~~~ 125 (146)
T PRK09491 96 GVATLWLEVRASNAAAIALYES-LGFNEVTI 125 (146)
T ss_pred CCcEEEEEEccCCHHHHHHHHH-cCCEEeee
Confidence 4566666653 34789999998 99987653
No 240
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=21.94 E-value=96 Score=21.21 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=24.9
Q ss_pred ccceeeEEEEEcCC-HHHHHHHHHHhhCCeeeecC
Q 036243 6 SLKSLNHFSLVCRS-VEKSLDFYQNVIGFLPIRRP 39 (146)
Q Consensus 6 ~~~~i~hv~l~v~D-~~~a~~Fy~~~Lg~~~~~~~ 39 (146)
...+.+-|.|.+.+ -..|.++|+. |||....+.
T Consensus 114 ~~~g~~eVvLeTe~~n~~A~~LY~s-LGF~r~~r~ 147 (165)
T KOG3139|consen 114 RSRGYSEVVLETEVTNLSALRLYES-LGFKRDKRL 147 (165)
T ss_pred HHCCCcEEEEeccccchHHHHHHHh-cCceEecce
Confidence 44667788888886 4567899998 999886553
No 241
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=21.69 E-value=2e+02 Score=17.44 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=34.9
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcCc--eEeeccee----cCC-e------eeEEEEEECCCCCeE
Q 036243 63 PKDNHISFQCENMATVERKLTEMKI--EYVKSRVE----EGG-I------YVDQVFFHDPDGSMI 114 (146)
Q Consensus 63 ~~~~hl~~~v~d~~~~~~~l~~~G~--~~~~~~~~----~~g-~------~~~~~~~~DPdG~~i 114 (146)
.+..-+++..++.+++.+.+++.+. .+...+.. ..+ . .....|+.||+|.++
T Consensus 58 ~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 58 KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEE
T ss_pred ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEE
Confidence 3667788889988888888887764 44332111 011 1 457899999999765
No 242
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=21.57 E-value=1.2e+02 Score=16.00 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=11.5
Q ss_pred eEEEEEECCCCCeEE
Q 036243 101 VDQVFFHDPDGSMIE 115 (146)
Q Consensus 101 ~~~~~~~DPdG~~ie 115 (146)
.+.|.+.+.+|..|-
T Consensus 5 ~~~f~L~a~ng~via 19 (49)
T PF07411_consen 5 QFRFRLKAGNGEVIA 19 (49)
T ss_dssp EEEEEEE-TTS-EEE
T ss_pred CEEEEEEcCCCCEEE
Confidence 388999999999988
No 243
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=21.45 E-value=1.3e+02 Score=22.63 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.5
Q ss_pred CHHHHHHHHHhcCceEe
Q 036243 74 NMATVERKLTEMKIEYV 90 (146)
Q Consensus 74 d~~~~~~~l~~~G~~~~ 90 (146)
|++.+.+++.+.|+..+
T Consensus 18 nl~~l~~ri~~~~~~tV 34 (294)
T PF14883_consen 18 NLDKLIQRIKDMGINTV 34 (294)
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 78999999999988654
No 244
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=21.09 E-value=2.2e+02 Score=17.67 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=32.2
Q ss_pred CCceEEEEe------CCHHHHHHHHHhcCceEee--ccee----cCC-eeeEEEEEECCCCCeEEEEe
Q 036243 64 KDNHISFQC------ENMATVERKLTEMKIEYVK--SRVE----EGG-IYVDQVFFHDPDGSMIEICN 118 (146)
Q Consensus 64 ~~~hl~~~v------~d~~~~~~~l~~~G~~~~~--~~~~----~~g-~~~~~~~~~DPdG~~iel~~ 118 (146)
+..-+++.+ ++.+++.+.++++++.+.. .+.. ..+ .+....++.|++|.++....
T Consensus 56 ~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 56 GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEe
Confidence 344555544 3567777788887765432 1110 011 13467899999998876553
No 245
>PRK10514 putative acetyltransferase; Provisional
Probab=20.68 E-value=1.3e+02 Score=18.96 Aligned_cols=19 Identities=32% Similarity=0.704 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhCCeeeecCC
Q 036243 21 EKSLDFYQNVIGFLPIRRPG 40 (146)
Q Consensus 21 ~~a~~Fy~~~Lg~~~~~~~~ 40 (146)
.++..||++ +||+......
T Consensus 110 ~~a~~~yek-~Gf~~~~~~~ 128 (145)
T PRK10514 110 EQAVGFYKK-MGFKVTGRSE 128 (145)
T ss_pred HHHHHHHHH-CCCEEecccc
Confidence 589999998 9999875533
No 246
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=20.36 E-value=1.1e+02 Score=18.51 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=20.9
Q ss_pred eeeEEEEEcC-CHHHHHHHHHHhhCCeeeecC
Q 036243 9 SLNHFSLVCR-SVEKSLDFYQNVIGFLPIRRP 39 (146)
Q Consensus 9 ~i~hv~l~v~-D~~~a~~Fy~~~Lg~~~~~~~ 39 (146)
++.++.+.+. .-..+..||++ +||+.....
T Consensus 87 ~~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~ 117 (131)
T TIGR01575 87 GVNEIFLEVRVSNIAAQALYKK-LGFNEIAIR 117 (131)
T ss_pred CCCeEEEEEecccHHHHHHHHH-cCCCccccc
Confidence 3566666554 34668899988 999877653
No 247
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.29 E-value=2.9e+02 Score=18.72 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=37.6
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcCceEeeccee---------------cCC----eeeEEEEEECCCCCeEEEE
Q 036243 63 PKDNHISFQCENMATVERKLTEMKIEYVKSRVE---------------EGG----IYVDQVFFHDPDGSMIEIC 117 (146)
Q Consensus 63 ~~~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~---------------~~g----~~~~~~~~~DPdG~~iel~ 117 (146)
.+...+++.+++.++..+...++|+++..-..+ ..| .-.++-|+.|+||.+....
T Consensus 63 ~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 63 LGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 467789999999888888777777655421110 000 1247889999999877777
Done!