BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036245
         (64 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O82337|AGP16_ARATH Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1
          SV=1
          Length = 73

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 48/62 (77%), Gaps = 4/62 (6%)

Query: 3  NSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITYL 62
          NS+  +AL    F+F  IL L  AQ++AP  APAP+SDGT+IDQGIAY+LMV+AL +TYL
Sbjct: 5  NSVTGFAL--FSFVFAVILSLAGAQSLAP--APAPTSDGTSIDQGIAYLLMVVALVLTYL 60

Query: 63 VH 64
          +H
Sbjct: 61 IH 62


>sp|Q9FK16|AGP22_ARATH Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3
          SV=1
          Length = 63

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 43/50 (86%)

Query: 15 FMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITYLVH 64
          F+ ++++ L  AQ+ + SPAPAP+SDGT+IDQGIAY+LM++ALA+TY +H
Sbjct: 14 FVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63


>sp|Q9M373|AGP20_ARATH Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3
          SV=1
          Length = 74

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%), Gaps = 4/62 (6%)

Query: 3  NSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITYL 62
          NS+ + AL    F+F  I     AQ++AP  AP+P+SDGT+IDQGIAY+LMV+AL +TYL
Sbjct: 5  NSVAVIAL--FAFVFAVISPFAGAQSLAP--APSPTSDGTSIDQGIAYLLMVVALVLTYL 60

Query: 63 VH 64
          +H
Sbjct: 61 IH 62


>sp|Q8B0H0|L_VSIVC RNA-directed RNA polymerase L OS=Vesicular stomatitis Indiana virus
            (strain 94GUB Central America) GN=L PE=3 SV=1
          Length = 2109

 Score = 35.0 bits (79), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 1    MMNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPA-PSSDGTAIDQGIAYILMVLALAI 59
            + +S R   L  IG  +MAI+   N  ++   P P  P SDGTA + GIA   + L L++
Sbjct: 1918 LKSSDRPADLLTIGLFYMAIISYYNINHIRVGPVPPNPPSDGTAQNVGIAITGISLWLSL 1977


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.137    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,378,499
Number of Sequences: 539616
Number of extensions: 632378
Number of successful extensions: 3383
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3373
Number of HSP's gapped (non-prelim): 9
length of query: 64
length of database: 191,569,459
effective HSP length: 36
effective length of query: 28
effective length of database: 172,143,283
effective search space: 4820011924
effective search space used: 4820011924
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)