Query 036245
Match_columns 64
No_of_seqs 76 out of 78
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 18:38:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls3_A High affinity copper up 63.9 1.9 6.6E-05 21.9 0.0 13 44-56 11-23 (29)
2 1tzs_X 23-MER peptide from PEL 17.2 67 0.0023 16.2 1.4 23 5-27 1-23 (26)
3 1k8k_E P21, ARP2/3 complex 21 15.1 98 0.0033 21.4 2.3 19 33-51 31-49 (178)
4 2ftc_M Mitochondrial ribosomal 13.3 76 0.0026 19.4 1.3 15 38-52 19-33 (110)
5 3dwl_E Actin-related protein 2 12.9 65 0.0022 22.2 0.9 19 33-51 32-51 (174)
6 3r8s_S 50S ribosomal protein L 11.2 93 0.0032 19.0 1.2 15 38-52 23-37 (110)
7 1i4j_A 50S ribosomal protein L 10.9 97 0.0033 18.9 1.2 14 38-51 23-36 (110)
8 2np9_A DPGC; protein inhibitor 9.2 54 0.0019 24.7 -0.5 17 32-48 109-125 (440)
9 2zjr_P 50S ribosomal protein L 8.9 1.3E+02 0.0043 19.3 1.2 14 38-51 44-57 (134)
10 1m45_B IQ2, IQ2 motif from MYO 8.8 1.6E+02 0.0055 14.6 1.3 8 44-51 2-9 (26)
No 1
>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=63.85 E-value=1.9 Score=21.92 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHH
Q 036245 44 IDQGIAYILMVLA 56 (64)
Q Consensus 44 iDQgIay~Lm~~A 56 (64)
+.-+++|+||++.
T Consensus 11 ~q~~~~Y~LML~~ 23 (29)
T 2ls3_A 11 IQVVISYFLMLIF 23 (29)
Confidence 4568999999753
No 2
>1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=17.18 E-value=67 Score=16.17 Aligned_cols=23 Identities=13% Similarity=0.041 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhc
Q 036245 5 MRLYALPVIGFMFMAILQLGNAQ 27 (64)
Q Consensus 5 m~~~~lvl~~~l~~al~~~~~aq 27 (64)
||.+.-++...+..+..+|+.|.
T Consensus 1 MK~li~piAaGLLLa~sqp~lAa 23 (26)
T 1tzs_X 1 MKYLLPTAAAGLLLLAAQPAMAM 23 (26)
T ss_pred CcchhhhHHHHHHHHhcChHhhh
Confidence 45566666677777777776653
No 3
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=15.07 E-value=98 Score=21.38 Aligned_cols=19 Identities=37% Similarity=0.728 Sum_probs=14.7
Q ss_pred CCCCCCCCchhHHHHHHHH
Q 036245 33 PAPAPSSDGTAIDQGIAYI 51 (64)
Q Consensus 33 pApap~~dg~aiDQgIay~ 51 (64)
|||...+|--.||++|.|+
T Consensus 31 PAp~~~~~~DIiDEal~~F 49 (178)
T 1k8k_E 31 PAPRETKDTDIVDEAIYYF 49 (178)
T ss_dssp SCCBCCSSCCHHHHHHHHH
T ss_pred CCCCCCCccchHHHHHHHH
Confidence 5554577888899999986
No 4
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=13.30 E-value=76 Score=19.44 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=12.2
Q ss_pred CCCchhHHHHHHHHH
Q 036245 38 SSDGTAIDQGIAYIL 52 (64)
Q Consensus 38 ~~dg~aiDQgIay~L 52 (64)
.+-|+++|++++|+=
T Consensus 19 ~IrG~~v~eAl~~L~ 33 (110)
T 2ftc_M 19 LIRGMSIDQALAQLE 33 (110)
T ss_pred HHcCCcHHHHHHHHH
Confidence 456999999999863
No 5
>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=12.93 E-value=65 Score=22.21 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=7.2
Q ss_pred CCCCC-CCCchhHHHHHHHH
Q 036245 33 PAPAP-SSDGTAIDQGIAYI 51 (64)
Q Consensus 33 pApap-~~dg~aiDQgIay~ 51 (64)
|||.+ .+|--.||++|.|+
T Consensus 32 PA~~~~~~~~DIiDEal~~F 51 (174)
T 3dwl_E 32 PAYPADESQMDIIDECIGLF 51 (174)
T ss_dssp ------------CHHHHHHH
T ss_pred CCCCCCCCCcChHHHHHHHH
Confidence 55555 67778899999986
No 6
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=11.25 E-value=93 Score=19.03 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=11.9
Q ss_pred CCCchhHHHHHHHHH
Q 036245 38 SSDGTAIDQGIAYIL 52 (64)
Q Consensus 38 ~~dg~aiDQgIay~L 52 (64)
.+-|+++|+++.|+=
T Consensus 23 ~IrG~~v~~Al~~L~ 37 (110)
T 3r8s_S 23 LIRGKKVSQALDILT 37 (110)
T ss_dssp HHTTCBHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHh
Confidence 346899999999873
No 7
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=10.91 E-value=97 Score=18.95 Aligned_cols=14 Identities=7% Similarity=0.256 Sum_probs=11.5
Q ss_pred CCCchhHHHHHHHH
Q 036245 38 SSDGTAIDQGIAYI 51 (64)
Q Consensus 38 ~~dg~aiDQgIay~ 51 (64)
.+-|+.+|++++|+
T Consensus 23 ~IrG~~v~~Al~~L 36 (110)
T 1i4j_A 23 LIRGKSLEEARNIL 36 (110)
T ss_dssp HHTTCBHHHHHHHH
T ss_pred HHcCCcHHHHHHHH
Confidence 34689999999986
No 8
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*
Probab=9.24 E-value=54 Score=24.67 Aligned_cols=17 Identities=41% Similarity=0.763 Sum_probs=13.7
Q ss_pred CCCCCCCCCchhHHHHH
Q 036245 32 SPAPAPSSDGTAIDQGI 48 (64)
Q Consensus 32 apApap~~dg~aiDQgI 48 (64)
...|-..-+|..|||||
T Consensus 109 ~~~~~~~~~g~~~~~~~ 125 (440)
T 2np9_A 109 RSLPQAAKEGHEIDQGI 125 (440)
T ss_dssp TTSCTTTCCCTHHHHHH
T ss_pred hhccccccCCCCcccch
Confidence 34566788999999998
No 9
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=8.94 E-value=1.3e+02 Score=19.31 Aligned_cols=14 Identities=7% Similarity=0.238 Sum_probs=11.9
Q ss_pred CCCchhHHHHHHHH
Q 036245 38 SSDGTAIDQGIAYI 51 (64)
Q Consensus 38 ~~dg~aiDQgIay~ 51 (64)
.+-|+.+|++++|+
T Consensus 44 ~IRG~~v~eAl~~L 57 (134)
T 2zjr_P 44 VIRGKSVQDAEDLL 57 (134)
T ss_dssp HSTTSBHHHHHHHH
T ss_pred HHcCCcHHHHHHHH
Confidence 46799999999986
No 10
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=8.84 E-value=1.6e+02 Score=14.60 Aligned_cols=8 Identities=50% Similarity=0.912 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 036245 44 IDQGIAYI 51 (64)
Q Consensus 44 iDQgIay~ 51 (64)
|.|+|-|+
T Consensus 2 isqaikyl 9 (26)
T 1m45_B 2 ISQAIKYL 9 (26)
T ss_dssp HHHHHHHH
T ss_pred HhHHHHHH
Done!