Query 036245
Match_columns 64
No_of_seqs 76 out of 78
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 18:38:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036245.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036245hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 37.8 18 0.0013 17.5 2.9 17 46-62 2-18 (30)
2 d1v54m_ f.23.7.1 (M:) Mitochon 17.4 60 0.0044 16.5 2.8 17 43-59 12-28 (43)
3 d1r8ja2 c.23.1.5 (A:1-135) N-t 17.1 27 0.002 21.3 1.5 12 41-52 115-126 (135)
4 d1k8ke_ a.148.1.1 (E:) Arp2/3 16.7 39 0.0029 21.7 2.3 19 33-51 30-48 (174)
5 d2sqca1 a.102.4.2 (A:8-36,A:30 14.0 37 0.0027 22.0 1.7 12 41-52 5-16 (352)
6 d1oeda_ f.36.1.1 (A:) Acetylch 9.7 1.1E+02 0.0077 18.0 2.7 13 52-64 210-222 (227)
7 d2hjqa1 a.140.3.2 (A:50-103) H 8.4 90 0.0066 16.5 1.7 16 37-52 31-46 (54)
8 d1bl0a1 a.4.1.8 (A:9-62) MarA 8.4 83 0.0061 14.7 1.5 12 40-51 1-12 (54)
9 d2qswa1 d.58.18.13 (A:256-345) 8.2 75 0.0055 17.0 1.4 13 39-51 65-77 (90)
10 d1vqor1 d.55.1.1 (R:1-150) Rib 7.5 74 0.0054 18.9 1.2 14 39-52 35-48 (150)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=37.85 E-value=18 Score=17.47 Aligned_cols=17 Identities=12% Similarity=0.530 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036245 46 QGIAYILMVLALAITYL 62 (64)
Q Consensus 46 QgIay~Lm~~Al~~tyl 62 (64)
+.|+|++.++.+.--++
T Consensus 2 e~i~yv~ifac~i~lff 18 (30)
T d2axtt1 2 ETITYVFIFACIIALFF 18 (30)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHHHHH
Confidence 46899998877655443
No 2
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.43 E-value=60 Score=16.54 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 036245 43 AIDQGIAYILMVLALAI 59 (64)
Q Consensus 43 aiDQgIay~Lm~~Al~~ 59 (64)
..||+|+...+++.+.+
T Consensus 12 ~~E~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 12 PKEQAIGLSVTFLSFLL 28 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 67999999988887654
No 3
>d1r8ja2 c.23.1.5 (A:1-135) N-terminal domain of the circadian clock protein KaiA {Synechococcus elongatus [TaxId: 32046]}
Probab=17.09 E-value=27 Score=21.30 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=10.1
Q ss_pred chhHHHHHHHHH
Q 036245 41 GTAIDQGIAYIL 52 (64)
Q Consensus 41 g~aiDQgIay~L 52 (64)
+..|||+|+-+|
T Consensus 115 ~~~ID~AIsrFL 126 (135)
T d1r8ja2 115 PYQVDAALAEFL 126 (135)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 568999999876
No 4
>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.71 E-value=39 Score=21.67 Aligned_cols=19 Identities=37% Similarity=0.728 Sum_probs=15.2
Q ss_pred CCCCCCCCchhHHHHHHHH
Q 036245 33 PAPAPSSDGTAIDQGIAYI 51 (64)
Q Consensus 33 pApap~~dg~aiDQgIay~ 51 (64)
|||....|---||++|.|+
T Consensus 30 PAp~~~~~~DIIDEal~~F 48 (174)
T d1k8ke_ 30 PAPRETKDTDIVDEAIYYF 48 (174)
T ss_dssp SCCBCCSSCCHHHHHHHHH
T ss_pred CCCCCCCcccHHHHHHHHH
Confidence 6666677778899999885
No 5
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=13.97 E-value=37 Score=22.01 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=10.5
Q ss_pred chhHHHHHHHHH
Q 036245 41 GTAIDQGIAYIL 52 (64)
Q Consensus 41 g~aiDQgIay~L 52 (64)
-++||+||.|++
T Consensus 5 ~~~i~rav~~L~ 16 (352)
T d2sqca1 5 ARTLDRAVEYLL 16 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 478999999987
No 6
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=9.74 E-value=1.1e+02 Score=18.03 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhC
Q 036245 52 LMVLALAITYLVH 64 (64)
Q Consensus 52 Lm~~Al~~tyl~h 64 (64)
+..+++++.+++|
T Consensus 210 i~~i~if~~~~~~ 222 (227)
T d1oeda_ 210 IGTVSVFAGRLIE 222 (227)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344566666654
No 7
>d2hjqa1 a.140.3.2 (A:50-103) Hypothetical protein YqbF {Bacillus subtilis [TaxId: 1423]}
Probab=8.45 E-value=90 Score=16.51 Aligned_cols=16 Identities=50% Similarity=0.580 Sum_probs=13.3
Q ss_pred CCCCchhHHHHHHHHH
Q 036245 37 PSSDGTAIDQGIAYIL 52 (64)
Q Consensus 37 p~~dg~aiDQgIay~L 52 (64)
-.||=|.-|+-|||+|
T Consensus 31 ~ps~fkn~~eria~il 46 (54)
T d2hjqa1 31 NPSDFKNADERIAYIL 46 (54)
T ss_dssp CTTSCCSHHHHHHHHH
T ss_pred ChhhhcChHHHHHHHH
Confidence 3578888899999997
No 8
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=8.40 E-value=83 Score=14.74 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=8.7
Q ss_pred CchhHHHHHHHH
Q 036245 40 DGTAIDQGIAYI 51 (64)
Q Consensus 40 dg~aiDQgIay~ 51 (64)
|-.+|.+.+.|+
T Consensus 1 D~~~i~~v~~yI 12 (54)
T d1bl0a1 1 DAITIHSILDWI 12 (54)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 556777877775
No 9
>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding protein MetN2 {Enterococcus faecalis [TaxId: 1351]}
Probab=8.23 E-value=75 Score=16.96 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=10.4
Q ss_pred CCchhHHHHHHHH
Q 036245 39 SDGTAIDQGIAYI 51 (64)
Q Consensus 39 ~dg~aiDQgIay~ 51 (64)
+|-..+|++++|+
T Consensus 65 G~~~~i~~al~~L 77 (90)
T d2qswa1 65 GEEQNILAAIEGL 77 (90)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4567899999986
No 10
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=7.55 E-value=74 Score=18.92 Aligned_cols=14 Identities=14% Similarity=0.432 Sum_probs=11.6
Q ss_pred CCchhHHHHHHHHH
Q 036245 39 SDGTAIDQGIAYIL 52 (64)
Q Consensus 39 ~dg~aiDQgIay~L 52 (64)
+=|+.+|+++.|+=
T Consensus 35 IrGk~v~~A~~~L~ 48 (150)
T d1vqor1 35 IKGKTAGEAVDYLE 48 (150)
T ss_dssp HTTSBHHHHHHHHH
T ss_pred HcCCCHHHHHHHHH
Confidence 45899999999874
Done!