BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036248
         (301 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I1A|A Chain A, A Retroviral Protease-Like Domain In The Eukaryotic
           Protein Ddi1
 pdb|2I1A|B Chain B, A Retroviral Protease-Like Domain In The Eukaryotic
           Protein Ddi1
 pdb|2I1A|C Chain C, A Retroviral Protease-Like Domain In The Eukaryotic
           Protein Ddi1
 pdb|2I1A|D Chain D, A Retroviral Protease-Like Domain In The Eukaryotic
           Protein Ddi1
          Length = 148

 Score = 35.8 bits (81), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 191 LSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFL---VAVGNGERIRSEGHC 247
           ++ +INN P+   +DTG+    +  RLA    L+      F+     VG G +I    H 
Sbjct: 29  INIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTG-KIIGRIHQ 87

Query: 248 SKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEK 282
           ++VK E Q +     F +LD +  D ++G+  L++
Sbjct: 88  AQVKIETQYI--PCSFTVLD-TDIDVLIGLDMLKR 119


>pdb|3S8I|A Chain A, The Retroviral-Like Protease (Rvp) Domain Of Human Ddi1
 pdb|3S8I|B Chain B, The Retroviral-Like Protease (Rvp) Domain Of Human Ddi1
          Length = 148

 Score = 31.2 bits (69), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 191 LSAKINNKPLSVLIDTGSTHNYLHPRLA---HFLHLAIEKTMSFLVAVGNGERIRSEGHC 247
           ++ K+N  PL   +D+G+    +    A   + + L   +       VG  +RI    H 
Sbjct: 27  INCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGT-QRIIGRVHL 85

Query: 248 SKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEK 282
           ++++ E  G   +  F IL+    D +LG+  L +
Sbjct: 86  AQIQIE--GDFLQCSFSILEDQPMDMLLGLDMLRR 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,369,240
Number of Sequences: 62578
Number of extensions: 262596
Number of successful extensions: 628
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 2
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)