BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036248
(301 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09PK2|APRV1_MOUSE Retroviral-like aspartic protease 1 OS=Mus musculus GN=Asprv1 PE=1
SV=1
Length = 339
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 65/135 (48%), Gaps = 15/135 (11%)
Query: 172 PSEILQE-EEILVEDTVPKQ--LSAKINNKPLSVLIDTGSTHNYLHPRLAHFL---HLAI 225
P E E EEIL +++ K L K+ + P+ L+D+G+ + +HP L + L
Sbjct: 174 PGEAFSEPEEILFANSMGKGYYLKGKVGHVPVRFLVDSGAQVSVVHPALWEEVTDGDLDT 233
Query: 226 EKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEKLGK 285
+ + +V V NG ++ G + + +A+F + + S +A++G
Sbjct: 234 LRPFNNVVKVANGAEMKILG-VWDTEISLGKTKLKAEFLVANASAEEAIIGTD------- 285
Query: 286 IITDHKALTMEFTYK 300
++ DH A+ ++F ++
Sbjct: 286 VLQDHNAV-LDFEHR 299
>sp|P40087|DDI1_YEAST DNA damage-inducible protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DDI1 PE=1 SV=1
Length = 428
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 191 LSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLV---AVGNGERIRSEGHC 247
++ +INN P+ +DTG+ + RLA L+ F+ VG G +I H
Sbjct: 206 INIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTG-KIIGRIHQ 264
Query: 248 SKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEK 282
++VK E Q + F +LD + D ++G+ L++
Sbjct: 265 AQVKIETQYI--PCSFTVLD-TDIDVLIGLDMLKR 296
>sp|Q6FQE9|DDI1_CANGA DNA damage-inducible protein 1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DDI1 PE=3 SV=1
Length = 426
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 191 LSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLV---AVGNGERIRSEGHC 247
++ +IN P+ +D+G+ + PRLA L F+ VG G +I H
Sbjct: 210 INMEINGHPVKAFVDSGAQMTIISPRLAEKTELKRFIDNRFIGEARGVGTG-KILGRVHQ 268
Query: 248 SKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEK 282
+VK E Q + F +LD S D +LG+ L++
Sbjct: 269 VQVKIETQFI--PCSFVVLD-SNVDLLLGLDMLKR 300
>sp|Q754R2|DDI1_ASHGO DNA damage-inducible protein 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DDI1
PE=3 SV=1
Length = 472
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 191 LSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLA--IEKTMSFLV-AVGNGERIRSEGHC 247
++ +IN P+ +D+G+ + LA L ++K + VG GE I H
Sbjct: 265 INMEINGHPVKAFVDSGAQSTIMSTALAERTGLGRLVDKRFRGIARGVGKGE-IIGRVHA 323
Query: 248 SKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEK 282
++VK E Q + F +LD + D +LG+ L +
Sbjct: 324 AQVKIETQFI--PCSFIVLD-TNVDLLLGLDMLRR 355
>sp|A0JPP7|DDI1_RAT Protein DDI1 homolog 1 OS=Rattus norvegicus GN=Ddi1 PE=2 SV=1
Length = 408
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 191 LSAKINNKPLSVLIDTGSTHNYLHPRLA---HFLHLAIEKTMSFLVAVGNGERIRSEGHC 247
++ K+N PL +D+G+ + A + + L + VG +RI H
Sbjct: 252 INCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGT-QRIMGRVHL 310
Query: 248 SKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEK 282
++++ E G + F IL+ D +LG+ L +
Sbjct: 311 AQIQIE--GDFLQCSFSILEEQPMDILLGLDMLRR 343
>sp|Q00770|FAAA_EMENI Fumarylacetoacetase OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=fahA PE=1 SV=3
Length = 431
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 80 PTIQNELAIHKPSNLRDAIALAKLIEDKLQSYNQKSISWKPTNTPIPTTTRNETNIRLNP 139
P IQ L + S L AL + + +++ Y QK S T TP P R+ ++
Sbjct: 57 PVIQPHLNVFNQSTLNAFAALGRPVHRQVREYIQKVFS---TETPFPQILRDNAALQKEA 113
Query: 140 LLPL 143
LLPL
Sbjct: 114 LLPL 117
>sp|Q9Z3D6|PMP12_CHLPN Probable outer membrane protein pmp12 OS=Chlamydia pneumoniae
GN=pmp12 PE=2 SV=1
Length = 514
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 221 LHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGVQWL 280
LH+ IE T +F+ RIR+E + V E V FEA + + DF + + L
Sbjct: 391 LHILIEDTDNFVPV-----RIRAEDKDALVSLEKLKVAFEAYWSVYDFPQFKEAFTIPLL 445
Query: 281 EKLG 284
E LG
Sbjct: 446 ELLG 449
>sp|Q64448|CXA3_MOUSE Gap junction alpha-3 protein OS=Mus musculus GN=Gja3 PE=2 SV=4
Length = 417
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 71 LDCFISGLKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSYNQKSISWKPTNTPIPTTTR 130
+DCFIS +PT + I A+A A L+ + L+ Y+ + WK +
Sbjct: 196 VDCFIS--RPTEKTIFVI-----FMLAVACASLVLNMLEIYH---LGWKKLKQGVTNHFN 245
Query: 131 -NETNIRLNPLLPLPPPNPSNPPKIAL 156
+ + R PL PLP S PP +++
Sbjct: 246 PDASEARHKPLDPLPTATSSGPPSVSI 272
>sp|Q53RT3|APRV1_HUMAN Retroviral-like aspartic protease 1 OS=Homo sapiens GN=ASPRV1 PE=1
SV=1
Length = 343
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 179 EEILVEDTVPKQ--LSAKINNKPLSVLIDTGSTHNYLHPRLAHFL---HLAIEKTMSFLV 233
+EI+ +++ K L KI P+ L+D+G+ + +HP L + L + +V
Sbjct: 184 KEIVFANSMGKGYYLKGKIGKVPVRFLVDSGAQVSVVHPNLWEEVTDGDLDTLQPFENVV 243
Query: 234 AVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEKLGKIITDHKAL 293
V NG ++ G + + +A F + + S +A++G ++ DH A+
Sbjct: 244 KVANGAEMKILG-VWDTAVSLGKLKLKAQFLVANASAEEAIIGTD-------VLQDHNAI 295
Query: 294 TMEFTYK 300
++F ++
Sbjct: 296 -LDFEHR 301
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,862,510
Number of Sequences: 539616
Number of extensions: 4733518
Number of successful extensions: 19779
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 19681
Number of HSP's gapped (non-prelim): 113
length of query: 301
length of database: 191,569,459
effective HSP length: 117
effective length of query: 184
effective length of database: 128,434,387
effective search space: 23631927208
effective search space used: 23631927208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)