BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036249
         (68 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TLV|A Chain A, Structure Of The Native And Inactive Lict Prd From B.
           Subtilis
          Length = 221

 Score = 26.9 bits (58), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 1   MPNVNNMKFLMNVVKSTEEYYYASEWNEE 29
           MPN+ N+  +M  + S  +Y++  E+NEE
Sbjct: 116 MPNIINITKVMQEILSIVKYHFKIEFNEE 144


>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
           Aurescens
 pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
           Aurescens
          Length = 482

 Score = 25.8 bits (55), Expect = 7.2,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 17  TEEYYYASEWNEEEKQKGLHQGS 39
           T E YY S+W  EE  +G +  S
Sbjct: 377 TPEVYYESDWGSEEWTRGAYASS 399


>pdb|1H99|A Chain A, Prd Of Lict Antiterminator From Bacillus Subtilis
          Length = 224

 Score = 25.4 bits (54), Expect = 9.1,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 1   MPNVNNMKFLMNVVKSTEEYYYASEWNEE 29
           MPN+ N+  +M  + S  +Y++  E+NEE
Sbjct: 116 MPNIINITKVMEEILSIVKYHFKIEFNEE 144


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.127    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,550,370
Number of Sequences: 62578
Number of extensions: 40310
Number of successful extensions: 91
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 5
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)