Query 036249
Match_columns 68
No_of_seqs 62 out of 64
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 18:41:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uky_C Nuclear CAP-binding pro 18.3 38 0.0013 17.7 0.7 19 5-23 1-19 (32)
2 2crg_A Metastasis associated p 17.7 45 0.0015 19.0 1.0 10 24-33 9-18 (70)
3 2yqk_A Arginine-glutamic acid 16.9 49 0.0017 18.4 1.0 11 23-33 9-19 (63)
4 3bs7_A Protein aveugle; sterIl 15.8 1.3E+02 0.0043 16.6 2.6 24 23-46 3-33 (78)
5 4a69_C Nuclear receptor corepr 15.6 49 0.0017 19.9 0.8 24 22-45 42-68 (94)
6 3h8k_B Autocrine motility fact 14.9 62 0.0021 16.2 1.0 10 26-35 1-10 (28)
7 3bs5_B Connector enhancer of k 13.9 1.6E+02 0.0055 16.2 2.7 25 23-47 4-35 (80)
8 2f3n_A SH3 and multiple ankyri 13.3 1.5E+02 0.0051 16.5 2.5 25 23-47 2-31 (76)
9 1bnx_A Protein (BAND 3); human 12.9 37 0.0013 17.6 -0.2 9 20-28 4-12 (34)
10 4g63_A Cytosolic IMP-GMP speci 12.3 58 0.002 25.1 0.6 8 2-9 404-411 (470)
No 1
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=18.35 E-value=38 Score=17.69 Aligned_cols=19 Identities=16% Similarity=-0.038 Sum_probs=11.0
Q ss_pred ccceeccCCCCCcchhhhh
Q 036249 5 NNMKFLMNVVKSTEEYYYA 23 (68)
Q Consensus 5 GgM~~~p~~~~~teE~YY~ 23 (68)
|+||--.-..+-.++|.|-
T Consensus 1 ~~Mf~~KRr~dfd~ddgYr 19 (32)
T 3uky_C 1 GSMFNRKRRGDFDEDENYR 19 (32)
T ss_pred CccccccccccCccccccc
Confidence 7888644444555566653
No 2
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=17.65 E-value=45 Score=19.00 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=8.1
Q ss_pred hcccHHHHhh
Q 036249 24 SEWNEEEKQK 33 (68)
Q Consensus 24 sEwt~eE~~~ 33 (68)
..||++|++.
T Consensus 9 ~~WT~eE~~~ 18 (70)
T 2crg_A 9 EEWSASEACL 18 (70)
T ss_dssp CCCCHHHHHH
T ss_pred CCCCHHHHHH
Confidence 6899999853
No 3
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=16.93 E-value=49 Score=18.37 Aligned_cols=11 Identities=27% Similarity=0.734 Sum_probs=8.6
Q ss_pred hhcccHHHHhh
Q 036249 23 ASEWNEEEKQK 33 (68)
Q Consensus 23 ~sEwt~eE~~~ 33 (68)
...||++|++.
T Consensus 9 ~~~WT~eE~~~ 19 (63)
T 2yqk_A 9 EKCWTEDEVKR 19 (63)
T ss_dssp CCSCCHHHHHH
T ss_pred CCCcCHHHHHH
Confidence 36899999853
No 4
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=15.80 E-value=1.3e+02 Score=16.61 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=16.0
Q ss_pred hhcccHHHHhh-------hccchhhhHHhhh
Q 036249 23 ASEWNEEEKQK-------GLHQGSLRFAENS 46 (68)
Q Consensus 23 ~sEwt~eE~~~-------Glh~~s~kFA~ns 46 (68)
+.+||.+++.+ |+.+-.-.|.+|.
T Consensus 3 v~~Wt~~~V~~WL~~~~~gl~~y~~~F~~~~ 33 (78)
T 3bs7_A 3 VYLWTVSDVLKWYRRHCGEYTQYEQLFAQHD 33 (78)
T ss_dssp GGGCCHHHHHHHHHHHSGGGGGGHHHHHHTT
T ss_pred hhhCCHHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence 46899999864 5555556666554
No 5
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=15.63 E-value=49 Score=19.94 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=16.7
Q ss_pred hhhcccHHHH---hhhccchhhhHHhh
Q 036249 22 YASEWNEEEK---QKGLHQGSLRFAEN 45 (68)
Q Consensus 22 Y~sEwt~eE~---~~Glh~~s~kFA~n 45 (68)
.+..||++|+ ++++++-.-+|-.=
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK~F~~I 68 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPKNFGLI 68 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 3578999998 56666666666443
No 6
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=14.94 E-value=62 Score=16.21 Aligned_cols=10 Identities=40% Similarity=0.999 Sum_probs=8.0
Q ss_pred ccHHHHhhhc
Q 036249 26 WNEEEKQKGL 35 (68)
Q Consensus 26 wt~eE~~~Gl 35 (68)
|+++|++..|
T Consensus 1 ~s~~eRq~~L 10 (28)
T 3h8k_B 1 WSADERQRML 10 (28)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8888888765
No 7
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=13.91 E-value=1.6e+02 Score=16.24 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=16.6
Q ss_pred hhcccHHHHhh-------hccchhhhHHhhhh
Q 036249 23 ASEWNEEEKQK-------GLHQGSLRFAENSR 47 (68)
Q Consensus 23 ~sEwt~eE~~~-------Glh~~s~kFA~nsr 47 (68)
+.+||.+++.. |+.+-.-.|.+|.-
T Consensus 4 v~~Ws~~~V~~WL~~l~~gl~~Y~~~F~~~~i 35 (80)
T 3bs5_B 4 VSKWSPSQVVDWMKGLDDCLQQYIKNFEREKI 35 (80)
T ss_dssp GGGCCHHHHHHHHHTSCGGGGGGHHHHHHHTC
T ss_pred cccCCHHHHHHHHHHHhhhHHHHHHHHHHcCC
Confidence 46899999864 45555666776644
No 8
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=13.26 E-value=1.5e+02 Score=16.48 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=16.5
Q ss_pred hhcccHHHHhh-----hccchhhhHHhhhh
Q 036249 23 ASEWNEEEKQK-----GLHQGSLRFAENSR 47 (68)
Q Consensus 23 ~sEwt~eE~~~-----Glh~~s~kFA~nsr 47 (68)
+.+||.+++.. ||.+-.-.|.+|.-
T Consensus 2 v~~Ws~~~V~~WL~~lgl~~Y~~~F~~~~i 31 (76)
T 2f3n_A 2 LQLWSKFDVGDWLESIHLGEHRDRFEDHEI 31 (76)
T ss_dssp GGGCCHHHHHHHHHHTTCGGGHHHHHHTTC
T ss_pred hhhCCHHHHHHHHHHCCCHHHHHHHHHcCC
Confidence 47899998764 55555666666543
No 9
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=12.95 E-value=37 Score=17.64 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=7.8
Q ss_pred hhhhhcccH
Q 036249 20 YYYASEWNE 28 (68)
Q Consensus 20 ~YY~sEwt~ 28 (68)
.||.|+|++
T Consensus 4 p~Y~SD~~d 12 (34)
T 1bnx_A 4 PYYLSDITD 12 (34)
T ss_dssp STTTHHHHH
T ss_pred cccHHHHHH
Confidence 589999988
No 10
>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A
Probab=12.28 E-value=58 Score=25.10 Aligned_cols=8 Identities=13% Similarity=0.090 Sum_probs=7.1
Q ss_pred CCccccee
Q 036249 2 PNVNNMKF 9 (68)
Q Consensus 2 PqWGgM~~ 9 (68)
||||++|-
T Consensus 404 ~~fGslfR 411 (470)
T 4g63_A 404 PKWERVFR 411 (470)
T ss_dssp TTTCCSSE
T ss_pred chhhhccC
Confidence 79999995
Done!