Query 036249
Match_columns 68
No_of_seqs 62 out of 64
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 18:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036249.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036249hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b8ta1 g.39.1.3 (A:1-35) Cyst 41.1 3.9 0.00029 20.7 0.7 7 1-7 1-7 (35)
2 d2crga1 a.4.1.3 (A:8-64) Metas 34.0 6.9 0.0005 20.4 1.0 10 24-33 2-11 (57)
3 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 32.6 7.1 0.00051 20.2 0.9 13 22-34 1-13 (65)
4 d1gksa_ a.3.1.1 (A:) Cytochrom 28.4 13 0.00091 19.8 1.5 8 1-8 55-62 (78)
5 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 23.9 12 0.00091 20.0 0.9 18 24-42 2-19 (59)
6 d2p41a1 c.66.1.25 (A:8-264) An 13.7 18 0.0013 24.5 -0.0 42 3-50 193-235 (257)
7 d2bdea1 c.108.1.23 (A:2-459) C 13.4 24 0.0018 25.4 0.6 8 2-9 403-410 (458)
8 d1kw4a_ a.60.1.2 (A:) Polyhome 11.9 47 0.0035 16.7 1.4 14 23-36 5-18 (70)
9 d2iw5b1 a.4.1.3 (B:376-440) RE 11.6 40 0.0029 17.1 1.0 10 24-33 6-15 (65)
10 d2d8ca1 a.60.1.2 (A:7-91) Sphi 11.5 38 0.0027 18.5 0.9 21 6-33 1-21 (85)
No 1
>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=41.14 E-value=3.9 Score=20.65 Aligned_cols=7 Identities=43% Similarity=0.496 Sum_probs=5.3
Q ss_pred CCCcccc
Q 036249 1 MPNVNNM 7 (68)
Q Consensus 1 fPqWGgM 7 (68)
||+|||=
T Consensus 1 mpn~ggg 7 (35)
T d1b8ta1 1 MPNWGGG 7 (35)
T ss_dssp CCCCCCC
T ss_pred CCccCCC
Confidence 6889874
No 2
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.05 E-value=6.9 Score=20.41 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=8.1
Q ss_pred hcccHHHHhh
Q 036249 24 SEWNEEEKQK 33 (68)
Q Consensus 24 sEwt~eE~~~ 33 (68)
.+||++|+..
T Consensus 2 d~WT~eE~~~ 11 (57)
T d2crga1 2 EEWSASEACL 11 (57)
T ss_dssp CCCCHHHHHH
T ss_pred CCCCHHHHHH
Confidence 5799999864
No 3
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.57 E-value=7.1 Score=20.20 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=9.7
Q ss_pred hhhcccHHHHhhh
Q 036249 22 YASEWNEEEKQKG 34 (68)
Q Consensus 22 Y~sEwt~eE~~~G 34 (68)
|...||+||-..=
T Consensus 1 ~~~~WT~eEd~~l 13 (65)
T d2cu7a1 1 YSVKWTIEEKELF 13 (65)
T ss_dssp CCCCCCHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 5678999987653
No 4
>d1gksa_ a.3.1.1 (A:) Cytochrome c551 {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=28.37 E-value=13 Score=19.75 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=4.8
Q ss_pred CCCcccce
Q 036249 1 MPNVNNMK 8 (68)
Q Consensus 1 fPqWGgM~ 8 (68)
||-||++|
T Consensus 55 MPa~g~~L 62 (78)
T d1gksa_ 55 MPAYDGRA 62 (78)
T ss_dssp BCCCBTTB
T ss_pred cCccCCCC
Confidence 46666655
No 5
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.95 E-value=12 Score=19.97 Aligned_cols=18 Identities=33% Similarity=0.813 Sum_probs=11.2
Q ss_pred hcccHHHHhhhccchhhhH
Q 036249 24 SEWNEEEKQKGLHQGSLRF 42 (68)
Q Consensus 24 sEwt~eE~~~Glh~~s~kF 42 (68)
+|||++|.+. |-.+-.+|
T Consensus 2 ~eWT~ee~~~-le~Al~~~ 19 (59)
T d2cqqa1 2 PEWTEEDLSQ-LTRSMVKF 19 (59)
T ss_dssp CCCCHHHHHH-HHHHHHHS
T ss_pred CCCCHHHHHH-HHHHHHHC
Confidence 6899998753 33334444
No 6
>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
Probab=13.70 E-value=18 Score=24.50 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=27.2
Q ss_pred Cccccee-ccCCCCCcchhhhhhcccHHHHhhhccchhhhHHhhhhccc
Q 036249 3 NVNNMKF-LMNVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSER 50 (68)
Q Consensus 3 qWGgM~~-~p~~~~~teE~YY~sEwt~eE~~~Glh~~s~kFA~nsrsEr 50 (68)
+|||.+. .|.|.+.|.|=||++. ..|--..+.....+..-.|
T Consensus 193 ~fgg~lVR~P~SRnst~EmY~Vs~------~~~n~~~~vn~~s~~ll~R 235 (257)
T d2p41a1 193 KHGGALVRNPLSRNSTHEMYWVSN------ASGNIVSSVNMISRMLINR 235 (257)
T ss_dssp HHCCEEECCTTSCTTCCCEEEETT------CCCCHHHHHHHHHHHHHHH
T ss_pred HhCCeeEcCCCCccccceeEEeec------ccccccchhHHHHHHHHHH
Confidence 4665555 7888899999999976 2343444555555554444
No 7
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Probab=13.39 E-value=24 Score=25.39 Aligned_cols=8 Identities=13% Similarity=0.090 Sum_probs=7.2
Q ss_pred CCccccee
Q 036249 2 PNVNNMKF 9 (68)
Q Consensus 2 PqWGgM~~ 9 (68)
||||++|-
T Consensus 403 ~~~GslfR 410 (458)
T d2bdea1 403 PKWERVFR 410 (458)
T ss_dssp TTTCCSSE
T ss_pred chhhhhhc
Confidence 79999995
No 8
>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]}
Probab=11.90 E-value=47 Score=16.74 Aligned_cols=14 Identities=14% Similarity=0.423 Sum_probs=10.3
Q ss_pred hhcccHHHHhhhcc
Q 036249 23 ASEWNEEEKQKGLH 36 (68)
Q Consensus 23 ~sEwt~eE~~~Glh 36 (68)
++.||.+++.+=|.
T Consensus 5 v~~Ws~~dV~~wL~ 18 (70)
T d1kw4a_ 5 ISSWSVDDVSNFIR 18 (70)
T ss_dssp GGGCCHHHHHHHHH
T ss_pred hhcCCHHHHHHHHH
Confidence 46899999876443
No 9
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.61 E-value=40 Score=17.11 Aligned_cols=10 Identities=30% Similarity=0.704 Sum_probs=7.7
Q ss_pred hcccHHHHhh
Q 036249 24 SEWNEEEKQK 33 (68)
Q Consensus 24 sEwt~eE~~~ 33 (68)
+.||++|.+.
T Consensus 6 ~~WT~eE~~~ 15 (65)
T d2iw5b1 6 ARWTTEEQLL 15 (65)
T ss_dssp SSCCHHHHHH
T ss_pred CCCCHHHHHH
Confidence 5699999764
No 10
>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.55 E-value=38 Score=18.50 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=0.0
Q ss_pred cceeccCCCCCcchhhhhhcccHHHHhh
Q 036249 6 NMKFLMNVVKSTEEYYYASEWNEEEKQK 33 (68)
Q Consensus 6 gM~~~p~~~~~teE~YY~sEwt~eE~~~ 33 (68)
||+...+.+++ .+||.+++++
T Consensus 1 ~~~s~~~~~~V-------~~Ws~~dV~~ 21 (85)
T d2d8ca1 1 GMLSARTMKEV-------VYWSPKKVAD 21 (85)
T ss_dssp SCCCCSCCSCC-------SSCCTTHHHH
T ss_pred CCCcccccCCh-------hhCCHHHHHH
Done!