Query 036250
Match_columns 347
No_of_seqs 388 out of 1918
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 18:42:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 7E-16 2.4E-20 121.9 5.1 72 191-262 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.5 1.5E-14 5E-19 109.8 2.9 52 212-263 22-73 (75)
3 2ect_A Ring finger protein 126 99.5 6E-14 2E-18 107.0 6.0 58 211-268 13-70 (78)
4 1iym_A EL5; ring-H2 finger, ub 99.4 3.1E-14 1E-18 101.3 2.9 51 211-261 3-54 (55)
5 2kiz_A E3 ubiquitin-protein li 99.4 1.1E-13 3.8E-18 103.0 4.0 52 212-263 13-64 (69)
6 2ep4_A Ring finger protein 24; 99.4 1.1E-13 3.8E-18 104.5 4.0 54 210-263 12-65 (74)
7 2ecm_A Ring finger and CHY zin 99.3 7.3E-13 2.5E-17 94.0 3.5 49 213-261 5-54 (55)
8 1v87_A Deltex protein 2; ring- 99.3 1.5E-12 5E-17 106.4 5.4 52 212-263 24-95 (114)
9 2djb_A Polycomb group ring fin 99.3 1.1E-12 3.7E-17 98.7 4.2 55 210-267 12-67 (72)
10 2ecl_A Ring-box protein 2; RNF 99.3 8.1E-13 2.8E-17 102.1 3.2 51 213-263 15-77 (81)
11 3ng2_A RNF4, snurf, ring finge 99.3 5.5E-13 1.9E-17 99.5 1.9 55 211-265 8-66 (71)
12 2ea6_A Ring finger protein 4; 99.3 6.2E-13 2.1E-17 98.4 2.1 53 210-262 12-68 (69)
13 2yur_A Retinoblastoma-binding 99.2 3.4E-12 1.2E-16 96.6 4.1 53 209-264 11-66 (74)
14 2xeu_A Ring finger protein 4; 99.2 1.4E-12 4.7E-17 95.1 1.6 53 213-265 3-59 (64)
15 2d8t_A Dactylidin, ring finger 99.2 1.6E-12 5.5E-17 97.5 2.0 50 211-263 13-62 (71)
16 2ysl_A Tripartite motif-contai 99.2 3.4E-12 1.2E-16 95.7 3.6 52 210-264 17-71 (73)
17 1t1h_A Gspef-atpub14, armadill 99.2 4.3E-12 1.5E-16 96.6 3.5 53 210-265 5-58 (78)
18 1chc_A Equine herpes virus-1 r 99.2 4.2E-12 1.4E-16 94.0 3.2 49 212-262 4-52 (68)
19 4ayc_A E3 ubiquitin-protein li 99.2 2.5E-12 8.5E-17 109.0 2.1 50 211-263 51-100 (138)
20 2ecy_A TNF receptor-associated 99.2 3.9E-12 1.3E-16 94.0 2.7 52 210-264 12-64 (66)
21 3dpl_R Ring-box protein 1; ubi 99.2 3.9E-12 1.3E-16 103.5 2.9 50 212-261 36-100 (106)
22 2ct2_A Tripartite motif protei 99.2 6.2E-12 2.1E-16 97.5 3.8 55 209-263 11-69 (88)
23 2ecn_A Ring finger protein 141 99.2 1.6E-12 5.4E-17 97.0 0.2 51 211-265 13-63 (70)
24 2ecw_A Tripartite motif-contai 99.2 1.2E-11 3.9E-16 95.0 4.3 54 210-266 16-75 (85)
25 2csy_A Zinc finger protein 183 99.2 6E-12 2.1E-16 96.7 2.5 47 212-261 14-60 (81)
26 3lrq_A E3 ubiquitin-protein li 99.2 3.5E-12 1.2E-16 102.3 0.9 53 210-265 19-73 (100)
27 2egp_A Tripartite motif-contai 99.2 5.6E-12 1.9E-16 95.9 1.9 53 209-264 8-67 (79)
28 2ecv_A Tripartite motif-contai 99.2 1.8E-11 6E-16 94.0 4.6 53 210-265 16-74 (85)
29 2d8s_A Cellular modulator of i 99.1 2E-11 6.8E-16 94.4 3.0 52 212-264 14-72 (80)
30 2y43_A E3 ubiquitin-protein li 99.1 1.1E-11 3.8E-16 98.7 1.5 50 211-263 20-70 (99)
31 2ysj_A Tripartite motif-contai 99.1 2.5E-11 8.5E-16 88.7 3.0 45 209-256 16-63 (63)
32 3fl2_A E3 ubiquitin-protein li 99.1 2E-11 6.9E-16 101.2 2.8 49 211-262 50-99 (124)
33 2ckl_A Polycomb group ring fin 99.1 2.9E-11 1E-15 97.9 3.1 51 210-263 12-63 (108)
34 4a0k_B E3 ubiquitin-protein li 99.1 1E-11 3.5E-16 102.8 0.2 49 213-261 48-111 (117)
35 3ztg_A E3 ubiquitin-protein li 99.1 3.5E-11 1.2E-15 94.3 3.1 49 210-261 10-61 (92)
36 1jm7_A BRCA1, breast cancer ty 99.0 4.4E-11 1.5E-15 96.9 1.9 51 212-265 20-73 (112)
37 4ap4_A E3 ubiquitin ligase RNF 99.0 5E-11 1.7E-15 98.7 2.0 55 212-266 6-64 (133)
38 2ecj_A Tripartite motif-contai 99.0 4.9E-11 1.7E-15 85.3 1.5 44 210-256 12-58 (58)
39 1z6u_A NP95-like ring finger p 99.0 7.8E-11 2.7E-15 101.4 2.8 49 212-263 77-126 (150)
40 1g25_A CDK-activating kinase a 99.0 1E-10 3.5E-15 86.0 2.7 53 213-265 3-58 (65)
41 2kr4_A Ubiquitin conjugation f 99.0 8.9E-11 3.1E-15 91.5 2.3 52 210-264 11-62 (85)
42 2kre_A Ubiquitin conjugation f 99.0 1.5E-10 5E-15 93.1 3.4 52 211-265 27-78 (100)
43 2ckl_B Ubiquitin ligase protei 99.0 8.7E-11 3E-15 102.1 2.1 49 211-262 52-102 (165)
44 1rmd_A RAG1; V(D)J recombinati 99.0 4.3E-11 1.5E-15 98.0 0.0 52 210-264 20-72 (116)
45 1wgm_A Ubiquitin conjugation f 99.0 1.6E-10 5.6E-15 92.5 3.2 53 210-265 19-72 (98)
46 3hct_A TNF receptor-associated 99.0 8.7E-11 3E-15 96.7 1.6 51 210-263 15-66 (118)
47 3l11_A E3 ubiquitin-protein li 99.0 4.7E-11 1.6E-15 97.6 -0.2 49 211-262 13-62 (115)
48 4ap4_A E3 ubiquitin ligase RNF 98.9 1.1E-10 3.9E-15 96.6 0.7 53 212-264 71-127 (133)
49 2ct0_A Non-SMC element 1 homol 98.9 2.7E-10 9.2E-15 86.7 2.5 50 213-264 15-66 (74)
50 1bor_A Transcription factor PM 98.9 1.7E-10 5.9E-15 82.7 1.0 46 212-263 5-50 (56)
51 1jm7_B BARD1, BRCA1-associated 98.9 2.2E-10 7.5E-15 94.2 1.7 49 211-264 20-69 (117)
52 3knv_A TNF receptor-associated 98.9 3.4E-10 1.2E-14 96.5 1.0 51 210-263 28-79 (141)
53 1e4u_A Transcriptional repress 98.8 1.4E-09 4.7E-14 83.5 3.7 56 210-266 8-66 (78)
54 2vje_A E3 ubiquitin-protein li 98.8 1.3E-09 4.5E-14 80.3 2.4 47 212-261 7-56 (64)
55 2c2l_A CHIP, carboxy terminus 98.8 1E-09 3.5E-14 101.9 2.0 53 209-264 204-257 (281)
56 4ic3_A E3 ubiquitin-protein li 98.8 7.9E-10 2.7E-14 83.7 0.9 45 211-262 22-67 (74)
57 2y1n_A E3 ubiquitin-protein li 98.8 2.5E-09 8.4E-14 105.0 3.3 47 214-263 333-380 (389)
58 2yu4_A E3 SUMO-protein ligase 98.7 1.5E-09 5.2E-14 86.0 0.9 51 212-265 6-66 (94)
59 2vje_B MDM4 protein; proto-onc 98.7 4.1E-09 1.4E-13 77.4 2.2 46 213-261 7-55 (63)
60 3hcs_A TNF receptor-associated 98.7 3E-09 1E-13 92.7 1.6 51 210-263 15-66 (170)
61 2f42_A STIP1 homology and U-bo 98.6 9.6E-09 3.3E-13 90.9 3.2 53 209-264 102-155 (179)
62 2ecg_A Baculoviral IAP repeat- 98.6 8.1E-09 2.8E-13 78.2 0.3 45 212-263 24-69 (75)
63 2yho_A E3 ubiquitin-protein li 98.5 1.9E-08 6.4E-13 77.2 0.4 45 212-263 17-62 (79)
64 3t6p_A Baculoviral IAP repeat- 98.4 4.2E-08 1.4E-12 95.2 1.8 45 211-262 293-338 (345)
65 3k1l_B Fancl; UBC, ring, RWD, 98.4 2.8E-08 9.5E-13 95.5 0.5 52 212-263 307-374 (381)
66 2ea5_A Cell growth regulator w 98.4 6.3E-08 2.1E-12 72.2 2.3 45 212-263 14-59 (68)
67 2bay_A PRE-mRNA splicing facto 98.4 4.5E-08 1.5E-12 71.5 1.4 50 214-266 4-54 (61)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.4 1.3E-07 4.4E-12 68.9 2.1 47 212-261 5-58 (60)
69 3htk_C E3 SUMO-protein ligase 98.3 7.8E-08 2.7E-12 89.5 0.8 53 211-266 179-236 (267)
70 1wim_A KIAA0161 protein; ring 98.2 2.8E-07 9.4E-12 72.5 0.6 50 213-262 5-66 (94)
71 3vk6_A E3 ubiquitin-protein li 97.8 6.7E-06 2.3E-10 65.4 2.0 47 215-263 3-50 (101)
72 3nw0_A Non-structural maintena 97.4 4.1E-05 1.4E-09 70.5 1.9 51 213-266 180-233 (238)
73 2ko5_A Ring finger protein Z; 93.6 0.023 7.7E-07 44.5 1.4 52 207-263 22-74 (99)
74 2kdx_A HYPA, hydrogenase/ureas 91.4 0.12 4.2E-06 41.9 3.2 35 6-41 71-106 (119)
75 2jun_A Midline-1; B-BOX, TRIM, 90.9 0.053 1.8E-06 42.3 0.6 32 213-246 3-36 (101)
76 3m62_A Ubiquitin conjugation f 86.8 0.22 7.6E-06 53.8 1.9 51 212-265 890-941 (968)
77 2lri_C Autoimmune regulator; Z 85.2 0.31 1.1E-05 35.5 1.5 43 213-259 12-59 (66)
78 1wil_A KIAA1045 protein; ring 84.1 0.4 1.4E-05 36.7 1.6 34 209-246 11-47 (89)
79 3a43_A HYPD, hydrogenase nicke 82.9 0.71 2.4E-05 38.5 2.9 35 6-40 68-122 (139)
80 3h0g_L DNA-directed RNA polyme 81.5 0.67 2.3E-05 33.6 1.9 31 6-36 19-49 (63)
81 4ayb_P DNA-directed RNA polyme 80.8 0.65 2.2E-05 31.5 1.5 32 7-39 2-37 (48)
82 1twf_L ABC10-alpha, DNA-direct 78.4 1.5 5.2E-05 32.3 3.0 28 6-33 26-53 (70)
83 2l5u_A Chromodomain-helicase-D 78.2 0.94 3.2E-05 32.2 1.8 45 211-259 9-58 (61)
84 1mm2_A MI2-beta; PHD, zinc fin 77.6 0.86 2.9E-05 32.4 1.4 46 212-260 8-57 (61)
85 1dx8_A Rubredoxin; electron tr 74.5 2.3 7.9E-05 31.3 3.1 37 1-38 1-56 (70)
86 3o36_A Transcription intermedi 71.4 1.1 3.9E-05 38.6 0.9 44 213-260 4-52 (184)
87 1f62_A Transcription factor WS 70.6 1.1 3.8E-05 30.4 0.6 43 215-258 2-49 (51)
88 1fp0_A KAP-1 corepressor; PHD 69.7 1.6 5.6E-05 33.6 1.4 45 211-259 23-72 (88)
89 3u5n_A E3 ubiquitin-protein li 68.6 1.3 4.5E-05 39.1 0.7 44 213-260 7-55 (207)
90 2ct7_A Ring finger protein 31; 67.0 3.1 0.0001 31.5 2.4 35 6-40 23-58 (86)
91 1we9_A PHD finger family prote 65.5 0.91 3.1E-05 32.4 -0.8 47 212-258 5-57 (64)
92 2k16_A Transcription initiatio 62.1 1.5 5.2E-05 32.2 -0.2 48 213-261 18-70 (75)
93 2yql_A PHD finger protein 21A; 61.4 0.78 2.7E-05 32.0 -1.8 44 212-258 8-55 (56)
94 3v43_A Histone acetyltransfera 59.7 3.2 0.00011 33.0 1.3 44 215-258 63-111 (112)
95 4rxn_A Rubredoxin; electron tr 59.6 6.3 0.00022 27.5 2.7 28 7-34 2-45 (54)
96 3lqh_A Histone-lysine N-methyl 59.5 4.7 0.00016 35.1 2.5 47 214-260 3-64 (183)
97 2ysm_A Myeloid/lymphoid or mix 59.5 3.1 0.00011 32.8 1.2 46 212-257 6-55 (111)
98 2kn9_A Rubredoxin; metalloprot 59.1 8.1 0.00028 29.2 3.4 28 6-33 25-68 (81)
99 3i2d_A E3 SUMO-protein ligase 58.6 4.2 0.00014 39.3 2.2 51 213-266 249-304 (371)
100 2con_A RUH-035 protein, NIN on 57.7 6.3 0.00021 29.7 2.6 30 9-40 16-45 (79)
101 2kgg_A Histone demethylase jar 57.6 7.3 0.00025 26.5 2.8 43 215-257 4-52 (52)
102 6rxn_A Rubredoxin; electron tr 57.4 7.9 0.00027 26.1 2.8 28 7-34 3-39 (46)
103 2gmg_A Hypothetical protein PF 56.8 4.8 0.00017 32.0 1.9 32 7-38 66-97 (105)
104 4fo9_A E3 SUMO-protein ligase 56.1 4.8 0.00016 38.8 2.1 52 213-266 215-270 (360)
105 1s24_A Rubredoxin 2; electron 55.4 8.6 0.00029 29.5 3.0 28 6-33 33-76 (87)
106 1wep_A PHF8; structural genomi 54.5 7.9 0.00027 28.6 2.7 46 214-260 13-64 (79)
107 2e6r_A Jumonji/ARID domain-con 53.6 1.1 3.7E-05 34.7 -2.3 48 211-259 14-66 (92)
108 2puy_A PHD finger protein 21A; 53.6 1.6 5.4E-05 30.8 -1.3 45 213-260 5-53 (60)
109 1yk4_A Rubredoxin, RD; electro 53.0 9.8 0.00034 26.2 2.8 26 8-33 2-43 (52)
110 2lv9_A Histone-lysine N-methyl 52.5 4.5 0.00016 31.4 1.1 44 214-258 29-75 (98)
111 2l43_A N-teminal domain from h 51.9 2 6.7E-05 32.9 -1.1 55 209-263 21-79 (88)
112 2v3b_B Rubredoxin 2, rubredoxi 51.6 12 0.00041 26.1 3.1 27 7-33 2-44 (55)
113 3shb_A E3 ubiquitin-protein li 51.1 2.7 9.2E-05 31.4 -0.4 25 234-258 47-76 (77)
114 1wev_A Riken cDNA 1110020M19; 50.4 2.6 8.8E-05 32.2 -0.6 49 213-261 16-74 (88)
115 2ro1_A Transcription intermedi 49.8 4.2 0.00014 35.4 0.6 43 214-259 3-49 (189)
116 1xwh_A Autoimmune regulator; P 48.0 2.7 9.1E-05 30.2 -0.9 43 212-258 7-54 (66)
117 2k2d_A Ring finger and CHY zin 47.3 11 0.00037 28.3 2.4 32 8-40 37-70 (79)
118 1e8j_A Rubredoxin; iron-sulfur 47.1 13 0.00046 25.5 2.7 27 7-33 2-44 (52)
119 2cs3_A Protein C14ORF4, MY039 46.4 4.5 0.00015 30.6 0.2 36 213-249 15-52 (93)
120 1ryq_A DNA-directed RNA polyme 45.6 10 0.00034 27.8 1.9 19 10-33 13-31 (69)
121 2e6s_A E3 ubiquitin-protein li 42.3 5.6 0.00019 29.6 0.1 43 215-258 28-76 (77)
122 2dj7_A Actin-binding LIM prote 42.3 12 0.00042 27.4 2.0 40 212-261 14-53 (80)
123 1weo_A Cellulose synthase, cat 41.9 38 0.0013 26.1 4.7 49 214-262 17-70 (93)
124 3qt1_I DNA-directed RNA polyme 40.5 13 0.00046 30.5 2.2 36 4-41 20-60 (133)
125 2m0e_A Zinc finger and BTB dom 40.3 11 0.00037 20.2 1.2 11 26-36 3-13 (29)
126 2yt5_A Metal-response element- 40.2 7.9 0.00027 27.4 0.7 48 213-260 6-62 (66)
127 3asl_A E3 ubiquitin-protein li 39.5 6.2 0.00021 28.7 -0.0 43 215-258 20-68 (70)
128 2cu8_A Cysteine-rich protein 2 37.8 14 0.00047 26.5 1.7 40 214-263 10-49 (76)
129 2b9d_A E7 protein; zinc finger 37.6 11 0.00038 26.0 1.0 23 11-33 11-49 (52)
130 2dar_A PDZ and LIM domain prot 37.3 15 0.00053 27.2 1.9 39 214-263 26-64 (90)
131 1iml_A CRIP, cysteine rich int 37.0 10 0.00036 27.1 0.9 39 215-263 2-40 (76)
132 3h0g_I DNA-directed RNA polyme 36.8 18 0.00063 28.6 2.4 34 6-41 2-40 (113)
133 1wff_A Riken cDNA 2810002D23 p 35.5 12 0.00041 28.5 1.1 28 8-38 25-52 (85)
134 1wg2_A Zinc finger (AN1-like) 35.2 13 0.00044 26.9 1.1 28 7-38 14-41 (64)
135 1x64_A Alpha-actinin-2 associa 34.8 20 0.00069 26.5 2.3 40 213-263 25-64 (89)
136 1ard_A Yeast transcription fac 34.7 13 0.00045 20.0 0.9 12 26-37 3-14 (29)
137 2e72_A POGO transposable eleme 34.5 14 0.00049 25.0 1.2 12 25-36 12-23 (49)
138 1p7a_A BF3, BKLF, kruppel-like 33.7 16 0.00055 21.2 1.3 13 25-37 11-23 (37)
139 1nyp_A Pinch protein; LIM doma 33.4 24 0.0008 24.3 2.3 39 214-263 6-44 (66)
140 2d8z_A Four and A half LIM dom 32.9 24 0.00083 24.5 2.3 39 214-263 6-44 (70)
141 1znf_A 31ST zinc finger from X 32.9 15 0.0005 19.5 0.9 11 26-36 2-12 (27)
142 1wfp_A Zinc finger (AN1-like) 32.7 18 0.0006 26.9 1.5 28 7-38 24-51 (74)
143 1vq8_Z 50S ribosomal protein L 32.7 4.6 0.00016 30.7 -1.7 30 6-36 25-56 (83)
144 3v43_A Histone acetyltransfera 32.6 27 0.00091 27.5 2.7 33 212-244 4-42 (112)
145 3t7l_A Zinc finger FYVE domain 31.5 22 0.00074 27.0 1.9 35 213-247 20-55 (90)
146 3ask_A E3 ubiquitin-protein li 31.2 8.7 0.0003 34.6 -0.4 43 215-258 176-224 (226)
147 1klr_A Zinc finger Y-chromosom 31.1 18 0.00061 19.4 1.1 12 26-37 3-14 (30)
148 2xb1_A Pygopus homolog 2, B-ce 31.0 18 0.00062 28.3 1.5 47 214-260 4-62 (105)
149 1dvp_A HRS, hepatocyte growth 30.9 30 0.001 30.4 3.1 35 212-246 160-195 (220)
150 2lvu_A Zinc finger and BTB dom 36.9 10 0.00036 20.1 0.0 13 26-38 3-15 (26)
151 1paa_A Yeast transcription fac 30.3 17 0.00059 19.7 0.9 11 26-36 3-13 (30)
152 2co8_A NEDD9 interacting prote 30.3 22 0.00075 26.0 1.8 42 213-264 15-56 (82)
153 4gne_A Histone-lysine N-methyl 30.1 28 0.00096 27.5 2.4 47 211-263 13-66 (107)
154 1x4l_A Skeletal muscle LIM-pro 30.0 31 0.0011 24.1 2.5 41 214-263 6-48 (72)
155 1wfh_A Zinc finger (AN1-like) 29.9 20 0.0007 25.8 1.4 29 6-38 13-41 (64)
156 2ysm_A Myeloid/lymphoid or mix 29.9 5.7 0.0002 31.2 -1.7 43 215-258 56-103 (111)
157 1joc_A EEA1, early endosomal a 29.9 23 0.00079 28.6 1.9 34 213-246 69-103 (125)
158 1x62_A C-terminal LIM domain p 29.7 16 0.00055 26.4 0.9 39 213-262 15-53 (79)
159 2ri7_A Nucleosome-remodeling f 29.5 7.2 0.00025 33.0 -1.3 47 212-259 7-59 (174)
160 2kvh_A Zinc finger and BTB dom 29.5 13 0.00044 19.9 0.2 11 26-36 4-14 (27)
161 2lbm_A Transcriptional regulat 29.2 25 0.00087 29.2 2.1 42 213-258 63-116 (142)
162 2kwj_A Zinc finger protein DPF 28.9 3.8 0.00013 32.6 -2.9 46 215-260 60-109 (114)
163 1wyh_A SLIM 2, skeletal muscle 28.7 26 0.00088 24.5 1.9 41 214-263 6-46 (72)
164 1wd2_A Ariadne-1 protein homol 28.6 11 0.00039 26.5 -0.1 36 214-249 7-47 (60)
165 1x4s_A Protein FON, zinc finge 28.6 26 0.00091 24.8 1.8 29 4-35 7-36 (59)
166 2d8y_A Eplin protein; LIM doma 27.7 53 0.0018 24.2 3.6 41 213-263 15-55 (91)
167 3fyb_A Protein of unknown func 27.6 16 0.00055 28.6 0.6 11 238-248 42-52 (104)
168 2d8v_A Zinc finger FYVE domain 27.5 19 0.00063 26.2 0.8 29 213-245 8-37 (67)
169 1rik_A E6APC1 peptide; E6-bind 27.5 15 0.0005 19.8 0.2 11 26-36 3-13 (29)
170 2o35_A Hypothetical protein DU 27.4 16 0.00055 28.6 0.6 12 237-248 42-53 (105)
171 2d8x_A Protein pinch; LIM doma 27.1 22 0.00074 24.9 1.2 39 214-263 6-44 (70)
172 2yw8_A RUN and FYVE domain-con 27.0 25 0.00087 26.0 1.6 34 213-246 19-53 (82)
173 2kfq_A FP1; protein, de novo p 26.9 21 0.00071 20.3 0.9 13 26-38 3-15 (32)
174 1pft_A TFIIB, PFTFIIBN; N-term 26.8 24 0.00081 23.5 1.3 34 7-40 4-39 (50)
175 1rim_A E6APC2 peptide; E6-bind 26.7 24 0.00082 20.2 1.2 11 26-36 3-13 (33)
176 2vpb_A Hpygo1, pygopus homolog 26.7 22 0.00076 25.4 1.2 31 213-243 8-40 (65)
177 2elx_A Zinc finger protein 406 26.6 16 0.00054 20.8 0.3 13 25-37 7-19 (35)
178 1x68_A FHL5 protein; four-and- 25.8 32 0.0011 24.4 1.9 41 214-262 6-47 (76)
179 2kvf_A Zinc finger and BTB dom 25.7 17 0.00058 19.5 0.3 12 26-37 4-15 (28)
180 2m0f_A Zinc finger and BTB dom 25.7 17 0.00057 19.4 0.3 11 26-36 3-13 (29)
181 2m0d_A Zinc finger and BTB dom 25.6 17 0.00059 19.5 0.3 11 26-36 4-14 (30)
182 2jz8_A Uncharacterized protein 25.5 26 0.0009 26.7 1.4 16 23-38 46-61 (87)
183 1v6g_A Actin binding LIM prote 25.4 29 0.00099 25.0 1.6 39 214-263 16-54 (81)
184 1wen_A Inhibitor of growth fam 25.4 31 0.0011 25.0 1.8 41 213-260 16-66 (71)
185 1a7i_A QCRP2 (LIM1); LIM domai 25.3 21 0.00073 25.8 0.9 40 214-263 8-47 (81)
186 2elr_A Zinc finger protein 406 25.2 24 0.0008 20.2 0.9 13 25-37 9-21 (36)
187 2lvt_A Zinc finger and BTB dom 31.1 15 0.00051 19.9 0.0 13 26-38 3-15 (29)
188 1y02_A CARP2, FYVE-ring finger 24.8 6.7 0.00023 31.8 -2.2 47 214-260 20-67 (120)
189 1zbd_B Rabphilin-3A; G protein 24.5 20 0.00067 29.5 0.6 33 212-244 54-88 (134)
190 2ewl_A Protein E7; HPV, oncopr 24.5 17 0.00059 25.4 0.2 26 7-32 8-53 (56)
191 1vfy_A Phosphatidylinositol-3- 24.4 32 0.0011 24.8 1.7 32 214-245 12-44 (73)
192 2akl_A PHNA-like protein PA012 24.4 21 0.00073 29.4 0.7 12 27-38 29-40 (138)
193 3bvo_A CO-chaperone protein HS 24.1 34 0.0011 30.1 2.1 28 6-33 8-35 (207)
194 1weu_A Inhibitor of growth fam 24.0 37 0.0013 26.0 2.0 40 213-259 36-85 (91)
195 2cor_A Pinch protein; LIM doma 23.9 30 0.001 25.0 1.5 39 214-263 16-54 (79)
196 1srk_A Zinc finger protein ZFP 23.8 19 0.00066 20.6 0.3 13 25-37 7-19 (35)
197 1x63_A Skeletal muscle LIM-pro 23.8 38 0.0013 24.3 2.0 41 214-263 16-56 (82)
198 1wfk_A Zinc finger, FYVE domai 23.7 33 0.0011 25.9 1.7 48 214-261 10-65 (88)
199 2kvg_A Zinc finger and BTB dom 23.7 12 0.00039 20.3 -0.7 11 26-36 4-14 (27)
200 2elq_A Zinc finger protein 406 23.2 19 0.00067 20.7 0.2 13 25-37 9-21 (36)
201 2cuq_A Four and A half LIM dom 23.0 41 0.0014 24.0 2.0 39 214-263 16-54 (80)
202 2elt_A Zinc finger protein 406 23.0 20 0.00068 20.6 0.2 12 25-36 9-20 (36)
203 2cur_A Skeletal muscle LIM-pro 23.0 28 0.00096 24.2 1.1 39 214-263 6-44 (69)
204 1x4k_A Skeletal muscle LIM-pro 22.8 35 0.0012 23.8 1.6 41 214-263 6-46 (72)
205 1x4u_A Zinc finger, FYVE domai 22.7 30 0.001 25.7 1.3 33 213-245 14-47 (84)
206 2lvr_A Zinc finger and BTB dom 28.4 18 0.00061 19.6 0.0 13 26-38 4-16 (30)
207 2elm_A Zinc finger protein 406 22.4 23 0.00077 20.8 0.4 12 26-37 10-21 (37)
208 1x6a_A LIMK-2, LIM domain kina 22.3 30 0.001 24.9 1.2 38 214-262 16-53 (81)
209 1wem_A Death associated transc 22.3 9.6 0.00033 27.9 -1.6 44 214-259 17-70 (76)
210 2jne_A Hypothetical protein YF 22.3 31 0.0011 26.9 1.3 29 10-39 34-62 (101)
211 2elp_A Zinc finger protein 406 22.2 21 0.00072 20.7 0.2 13 25-37 9-21 (37)
212 2enn_A NPKC-theta, protein kin 21.8 40 0.0014 24.6 1.8 27 7-33 33-59 (77)
213 3lpe_B DNA-directed RNA polyme 21.7 41 0.0014 23.7 1.7 18 11-33 4-21 (59)
214 1wig_A KIAA1808 protein; LIM d 21.7 29 0.00099 24.7 1.0 37 214-261 6-42 (73)
215 2dlo_A Thyroid receptor-intera 21.5 33 0.0011 24.7 1.3 39 214-263 16-54 (81)
216 3ga8_A HTH-type transcriptiona 21.3 39 0.0013 24.6 1.7 17 25-41 2-19 (78)
217 2elv_A Zinc finger protein 406 21.2 23 0.00079 20.4 0.3 13 25-37 9-21 (36)
218 2els_A Zinc finger protein 406 20.9 24 0.00083 20.3 0.3 12 25-36 9-20 (36)
219 3zyq_A Hepatocyte growth facto 20.8 33 0.0011 30.4 1.4 35 213-247 164-199 (226)
220 3mpx_A FYVE, rhogef and PH dom 20.6 21 0.00072 34.2 0.0 48 213-260 375-430 (434)
221 1x61_A Thyroid receptor intera 20.5 44 0.0015 23.2 1.8 40 214-262 6-45 (72)
222 1x3h_A Leupaxin; paxillin fami 20.4 45 0.0015 23.8 1.8 39 214-263 16-54 (80)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.59 E-value=7e-16 Score=121.94 Aligned_cols=72 Identities=38% Similarity=0.942 Sum_probs=63.5
Q ss_pred CCCCCcchHHHHHcCCcccccc-------cccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCC
Q 036250 191 RYGSLPAQKEVVKALPTVAIDQ-------DLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPS 262 (347)
Q Consensus 191 ~~~~~p~~~~~i~~lp~~~~~~-------~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (347)
.....+++++.+++||.+.+.+ +..|+||++.|..+..++.|||+|.||..||.+||..+.+||+||+.+..
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 4567789999999999887643 45799999999887889999999999999999999999999999998865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-14 Score=109.82 Aligned_cols=52 Identities=33% Similarity=0.896 Sum_probs=47.0
Q ss_pred ccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
+...|+||++.|..+..++.+||+|.||..||.+||..+.+||+||+.+...
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3568999999998878889999999999999999999999999999988653
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=6e-14 Score=107.03 Aligned_cols=58 Identities=40% Similarity=1.085 Sum_probs=50.6
Q ss_pred cccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCCCCccc
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSDDLKVQ 268 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~ 268 (347)
.+...|+||++.|.....++.++|+|.||..||.+|+..+.+||+||..+...+...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 4467899999999877778889999999999999999999999999999987655443
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.44 E-value=3.1e-14 Score=101.34 Aligned_cols=51 Identities=47% Similarity=1.079 Sum_probs=46.3
Q ss_pred cccccchhhhhhhccCCceEEec-CCCcccccchHHHHhcCCCCCCCCcccC
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEMP-CKHKFHGECIMPWLELQSSCPICRYQLP 261 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (347)
++...|+||++.|..++.++.++ |+|.||..||.+|+..+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45678999999998878889998 9999999999999999999999999874
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=103.04 Aligned_cols=52 Identities=33% Similarity=0.932 Sum_probs=47.4
Q ss_pred ccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
....|+||++.|..+..++.++|+|.||..||.+|+..+.+||+||..+...
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 4568999999998778899999999999999999999999999999998665
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=104.49 Aligned_cols=54 Identities=39% Similarity=0.930 Sum_probs=48.1
Q ss_pred ccccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
+.....|+||++.|.....++.++|+|.||..||.+|+..+.+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 344678999999998878888899999999999999999999999999998654
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.31 E-value=7.3e-13 Score=93.99 Aligned_cols=49 Identities=29% Similarity=0.649 Sum_probs=42.8
Q ss_pred cccchhhhhhhccC-CceEEecCCCcccccchHHHHhcCCCCCCCCcccC
Q 036250 213 DLQCAVCLEEFVMG-NEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLP 261 (347)
Q Consensus 213 ~~~C~ICl~~~~~~-~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (347)
...|+||++.|..+ ..++.++|+|.||..||.+|+..+.+||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 46899999999543 34788899999999999999999999999999874
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.31 E-value=1.5e-12 Score=106.37 Aligned_cols=52 Identities=21% Similarity=0.633 Sum_probs=42.0
Q ss_pred ccccchhhhhhhccCC---------------ceEEecCCCcccccchHHHH-----hcCCCCCCCCcccCCC
Q 036250 212 QDLQCAVCLEEFVMGN---------------EAKEMPCKHKFHGECIMPWL-----ELQSSCPICRYQLPSD 263 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~---------------~~~~lpC~H~Fh~~Ci~~Wl-----~~~~~CP~CR~~l~~~ 263 (347)
.+..|+||++.|.... .++.++|+|.||..||..|| ..+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4568999999996432 34478899999999999999 4567899999988544
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=98.70 Aligned_cols=55 Identities=20% Similarity=0.533 Sum_probs=47.0
Q ss_pred ccccccchhhhhhhccCCceEEe-cCCCcccccchHHHHhcCCCCCCCCcccCCCCCcc
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQSSCPICRYQLPSDDLKV 267 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 267 (347)
+.+...|+||++.| .+++.+ +|+|.||..||..|+..+..||+||..+...+...
T Consensus 12 ~~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 12 LTPYILCSICKGYL---IDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CCGGGSCTTTSSCC---SSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred cCCCCCCCCCChHH---HCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 44567999999999 567776 99999999999999998999999999997765443
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=8.1e-13 Score=102.11 Aligned_cols=51 Identities=24% Similarity=0.651 Sum_probs=40.3
Q ss_pred cccchhhhhhhc-----------cCCceEEec-CCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 213 DLQCAVCLEEFV-----------MGNEAKEMP-CKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 213 ~~~C~ICl~~~~-----------~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
+..|+||++.|. .++.++.++ |+|.||..||.+||..+.+||+||+++...
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 345666666663 445566776 999999999999999999999999987543
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.29 E-value=5.5e-13 Score=99.50 Aligned_cols=55 Identities=22% Similarity=0.648 Sum_probs=46.3
Q ss_pred cccccchhhhhhhcc----CCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCCCC
Q 036250 211 DQDLQCAVCLEEFVM----GNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSDDL 265 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~----~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 265 (347)
.++..|+||++.|.. +..++.++|+|.||..||.+|+..+.+||+||..+...+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 456789999999953 2344889999999999999999999999999999876543
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=6.2e-13 Score=98.41 Aligned_cols=53 Identities=21% Similarity=0.585 Sum_probs=44.6
Q ss_pred ccccccchhhhhhhccC----CceEEecCCCcccccchHHHHhcCCCCCCCCcccCC
Q 036250 210 IDQDLQCAVCLEEFVMG----NEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPS 262 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~----~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (347)
+.+...|+||++.|... ..++.++|+|.||..||..|+..+.+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567899999999542 334889999999999999999999999999998754
No 13
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.25 E-value=3.4e-12 Score=96.63 Aligned_cols=53 Identities=30% Similarity=0.664 Sum_probs=45.0
Q ss_pred cccccccchhhhhhhccCCceEEec-CCCcccccchHHHHhcC--CCCCCCCcccCCCC
Q 036250 209 AIDQDLQCAVCLEEFVMGNEAKEMP-CKHKFHGECIMPWLELQ--SSCPICRYQLPSDD 264 (347)
Q Consensus 209 ~~~~~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~l~~~~ 264 (347)
.+.+...|+||++.| .+++.++ |+|.||..||..|+..+ ..||+||..+...+
T Consensus 11 ~~~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 11 PIPDELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CSCGGGSCSSSCCCC---TTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred cCCCCCCCcCCChHH---hCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 344567999999999 7788999 99999999999999765 68999999865544
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.24 E-value=1.4e-12 Score=95.09 Aligned_cols=53 Identities=23% Similarity=0.657 Sum_probs=45.1
Q ss_pred cccchhhhhhhcc----CCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCCCC
Q 036250 213 DLQCAVCLEEFVM----GNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSDDL 265 (347)
Q Consensus 213 ~~~C~ICl~~~~~----~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 265 (347)
...|+||++.+.. +..++.++|+|.||..||.+|+..+.+||+||..+...+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 4689999999953 2345889999999999999999999999999999876543
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.6e-12 Score=97.52 Aligned_cols=50 Identities=32% Similarity=0.678 Sum_probs=44.9
Q ss_pred cccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
.+...|+||++.+ .+++.++|+|.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTC---VHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBC---SSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCccc---CCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 3456899999999 7789999999999999999999999999999998654
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.4e-12 Score=95.73 Aligned_cols=52 Identities=23% Similarity=0.654 Sum_probs=44.9
Q ss_pred ccccccchhhhhhhccCCceEEecCCCcccccchHHHHh---cCCCCCCCCcccCCCC
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLE---LQSSCPICRYQLPSDD 264 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~---~~~~CP~CR~~l~~~~ 264 (347)
+.+...|+||++.| .+++.++|+|.||..||..|+. ....||+||..+..++
T Consensus 17 ~~~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBC---SSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCccc---CCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 44567999999999 6788999999999999999996 4558999999987654
No 17
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.22 E-value=4.3e-12 Score=96.64 Aligned_cols=53 Identities=19% Similarity=0.480 Sum_probs=46.5
Q ss_pred ccccccchhhhhhhccCCceEEecCCCcccccchHHHHhc-CCCCCCCCcccCCCCC
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLEL-QSSCPICRYQLPSDDL 265 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~~~~ 265 (347)
+.+...|+||++.| .+++.++|+|.||..||..|+.. +.+||+||..+...+.
T Consensus 5 ~~~~~~C~IC~~~~---~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l 58 (78)
T 1t1h_A 5 FPEYFRCPISLELM---KDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL 58 (78)
T ss_dssp CSSSSSCTTTSCCC---SSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC
T ss_pred CcccCCCCCccccc---cCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhC
Confidence 45567999999999 78999999999999999999986 7789999999876543
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.22 E-value=4.2e-12 Score=94.05 Aligned_cols=49 Identities=33% Similarity=0.853 Sum_probs=42.6
Q ss_pred ccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPS 262 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (347)
....|+||++.+. ..++.++|+|.||..||..|+..+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3568999999993 235889999999999999999999999999998864
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.21 E-value=2.5e-12 Score=108.96 Aligned_cols=50 Identities=40% Similarity=0.929 Sum_probs=45.0
Q ss_pred cccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
.++..|+||++.| .+++.+||+|.||..||..|+..+.+||+||.++...
T Consensus 51 ~~~~~C~iC~~~~---~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBC---SSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCccc---CCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 3456899999999 7889999999999999999999999999999998654
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=3.9e-12 Score=93.95 Aligned_cols=52 Identities=21% Similarity=0.612 Sum_probs=44.2
Q ss_pred ccccccchhhhhhhccCCceEEecCCCcccccchHHHHh-cCCCCCCCCcccCCCC
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLE-LQSSCPICRYQLPSDD 264 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~l~~~~ 264 (347)
+.+...|+||++.+ .+++.++|+|.||..||..|+. ....||+||..+..++
T Consensus 12 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVL---CSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEE---SSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCcCCCCCCCChHh---cCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 34567899999999 6677799999999999999994 5678999999987654
No 21
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.21 E-value=3.9e-12 Score=103.55 Aligned_cols=50 Identities=26% Similarity=0.528 Sum_probs=42.2
Q ss_pred ccccchhhhhhhccC---------------CceEEecCCCcccccchHHHHhcCCCCCCCCcccC
Q 036250 212 QDLQCAVCLEEFVMG---------------NEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLP 261 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~---------------~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (347)
++..|+||++.|... ..++.++|+|.||..||.+||..+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 356899999998643 12577899999999999999999999999999863
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=6.2e-12 Score=97.51 Aligned_cols=55 Identities=25% Similarity=0.601 Sum_probs=46.0
Q ss_pred cccccccchhhhhhhccCCc-eEEecCCCcccccchHHHHhcC---CCCCCCCcccCCC
Q 036250 209 AIDQDLQCAVCLEEFVMGNE-AKEMPCKHKFHGECIMPWLELQ---SSCPICRYQLPSD 263 (347)
Q Consensus 209 ~~~~~~~C~ICl~~~~~~~~-~~~lpC~H~Fh~~Ci~~Wl~~~---~~CP~CR~~l~~~ 263 (347)
.+.+...|+||++.|..... ++.++|+|.||..||..|+..+ ..||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 44556799999999954333 8899999999999999999875 7899999988654
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.6e-12 Score=97.01 Aligned_cols=51 Identities=29% Similarity=0.866 Sum_probs=44.7
Q ss_pred cccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCCCC
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSDDL 265 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 265 (347)
.+...|+||++.+ .. +.++|+|.||..||.+|+..+.+||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~---~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGR---AD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSC---CS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCc---cC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 4467899999999 44 889999999999999999999999999999876543
No 24
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.18 E-value=1.2e-11 Score=94.99 Aligned_cols=54 Identities=35% Similarity=0.824 Sum_probs=46.3
Q ss_pred ccccccchhhhhhhccCCceEEecCCCcccccchHHHHhc------CCCCCCCCcccCCCCCc
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLEL------QSSCPICRYQLPSDDLK 266 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~------~~~CP~CR~~l~~~~~~ 266 (347)
+.+...|+||++.| .+++.++|+|.||..||..|+.. ...||+||..+...+..
T Consensus 16 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 16 IKEEVTCPICLELL---KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75 (85)
T ss_dssp CCTTTSCTTTCSCC---SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE
T ss_pred CccCCCCcCCChhh---CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC
Confidence 45567999999999 67789999999999999999987 66899999998765443
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=6e-12 Score=96.65 Aligned_cols=47 Identities=21% Similarity=0.595 Sum_probs=43.3
Q ss_pred ccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLP 261 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (347)
....|+||++.| ..++.++|+|.||..||..|+.....||+||..+.
T Consensus 14 ~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAF---QNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBC---CSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchh---cCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 456899999999 77889999999999999999998899999999985
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.17 E-value=3.5e-12 Score=102.30 Aligned_cols=53 Identities=32% Similarity=0.725 Sum_probs=45.7
Q ss_pred ccccccchhhhhhhccCCceEE-ecCCCcccccchHHHHhcC-CCCCCCCcccCCCCC
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKE-MPCKHKFHGECIMPWLELQ-SSCPICRYQLPSDDL 265 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~l~~~~~ 265 (347)
+.+...|+||++.| ..++. ++|+|.||..||..|+... ..||+||..+...+.
T Consensus 19 l~~~~~C~IC~~~~---~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 19 IAEVFRCFICMEKL---RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HHHHTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCccCCccc---cCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 34567999999999 67888 9999999999999999887 699999999865543
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.17 E-value=5.6e-12 Score=95.88 Aligned_cols=53 Identities=26% Similarity=0.679 Sum_probs=45.5
Q ss_pred cccccccchhhhhhhccCCceEEecCCCcccccchHHHHhc-------CCCCCCCCcccCCCC
Q 036250 209 AIDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLEL-------QSSCPICRYQLPSDD 264 (347)
Q Consensus 209 ~~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-------~~~CP~CR~~l~~~~ 264 (347)
.+.+...|+||++.| .+++.++|+|.||..||..|+.. ...||+||..+...+
T Consensus 8 ~~~~~~~C~IC~~~~---~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 8 NVQEEVTCPICLELL---TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCCEETTTTEEC---SSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred hcccCCCCcCCCccc---CCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 345667999999999 66788999999999999999976 568999999987654
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.8e-11 Score=93.95 Aligned_cols=53 Identities=26% Similarity=0.795 Sum_probs=45.8
Q ss_pred ccccccchhhhhhhccCCceEEecCCCcccccchHHHHhc------CCCCCCCCcccCCCCC
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLEL------QSSCPICRYQLPSDDL 265 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~------~~~CP~CR~~l~~~~~ 265 (347)
+.+...|+||++.+ .+++.++|+|.||..||..|+.. ...||+||..+...+.
T Consensus 16 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 16 VKEEVTCPICLELL---TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCCTTTCSCC---SSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred ccCCCCCCCCCccc---CCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 44567999999999 67788999999999999999977 7789999999876543
No 29
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2e-11 Score=94.40 Aligned_cols=52 Identities=23% Similarity=0.625 Sum_probs=43.2
Q ss_pred ccccchhhhhhhccCCceEEecCC-----CcccccchHHHHhcC--CCCCCCCcccCCCC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCK-----HKFHGECIMPWLELQ--SSCPICRYQLPSDD 264 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~-----H~Fh~~Ci~~Wl~~~--~~CP~CR~~l~~~~ 264 (347)
+...|.||+++|..++. .++||+ |.||..||.+||..+ .+||+||+.+....
T Consensus 14 ~~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 35689999999976554 479996 999999999999765 48999999987653
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.12 E-value=1.1e-11 Score=98.72 Aligned_cols=50 Identities=32% Similarity=0.782 Sum_probs=44.2
Q ss_pred cccccchhhhhhhccCCceEEe-cCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
.+...|+||++.| .+++.+ +|+|.||..||..|+..+..||+||..+...
T Consensus 20 ~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 20 DDLLRCGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHHTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCCcccCChhh---CCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 3457899999999 678887 8999999999999999889999999988653
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2.5e-11 Score=88.66 Aligned_cols=45 Identities=27% Similarity=0.724 Sum_probs=39.2
Q ss_pred cccccccchhhhhhhccCCceEEecCCCcccccchHHHHh---cCCCCCCC
Q 036250 209 AIDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLE---LQSSCPIC 256 (347)
Q Consensus 209 ~~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~---~~~~CP~C 256 (347)
.+.+...|+||++.| .+++.++|+|.||..||..|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBC---SSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchh---CCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345567999999999 6789999999999999999997 45589998
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.11 E-value=2e-11 Score=101.24 Aligned_cols=49 Identities=31% Similarity=0.690 Sum_probs=43.4
Q ss_pred cccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCC-CCCCCCcccCC
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQS-SCPICRYQLPS 262 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~ 262 (347)
.+...|+||++.| ..++.++|+|.||..||..|+.... .||+||..+..
T Consensus 50 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELV---FRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBC---SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHH---cCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3457899999999 7899999999999999999998554 89999999865
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.09 E-value=2.9e-11 Score=97.87 Aligned_cols=51 Identities=33% Similarity=0.772 Sum_probs=45.5
Q ss_pred ccccccchhhhhhhccCCceEEe-cCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
+.+...|+||++.| .+++.+ +|+|.||..||..|+.....||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYF---IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBC---SSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHH---hCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 44567999999999 678887 9999999999999999889999999998764
No 34
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.09 E-value=1e-11 Score=102.75 Aligned_cols=49 Identities=27% Similarity=0.567 Sum_probs=0.5
Q ss_pred cccchhhhhhhccC-------------C--ceEEecCCCcccccchHHHHhcCCCCCCCCcccC
Q 036250 213 DLQCAVCLEEFVMG-------------N--EAKEMPCKHKFHGECIMPWLELQSSCPICRYQLP 261 (347)
Q Consensus 213 ~~~C~ICl~~~~~~-------------~--~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (347)
+..|+||++.|... + .++.++|+|.||..||.+||..+.+||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 46899999999641 1 2334589999999999999999999999999864
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.09 E-value=3.5e-11 Score=94.35 Aligned_cols=49 Identities=29% Similarity=0.674 Sum_probs=42.9
Q ss_pred ccccccchhhhhhhccCCceEEec-CCCcccccchHHHHhcC--CCCCCCCcccC
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEMP-CKHKFHGECIMPWLELQ--SSCPICRYQLP 261 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~l~ 261 (347)
+.+...|+||++.| .+++.++ |+|.||..||..|+... ..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEEC---SSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhh---cCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45568999999999 7889999 99999999999999654 58999999873
No 36
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=4.4e-11 Score=96.91 Aligned_cols=51 Identities=29% Similarity=0.768 Sum_probs=43.8
Q ss_pred ccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCC---CCCCCCcccCCCCC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQS---SCPICRYQLPSDDL 265 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~---~CP~CR~~l~~~~~ 265 (347)
+...|+||++.| ..++.++|+|.||..||..|+..+. .||+||..+...+.
T Consensus 20 ~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCC---SSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccChhh---cCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 456899999999 6778899999999999999998654 89999999876543
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.03 E-value=5e-11 Score=98.74 Aligned_cols=55 Identities=22% Similarity=0.649 Sum_probs=46.5
Q ss_pred ccccchhhhhhhcc----CCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCCCCc
Q 036250 212 QDLQCAVCLEEFVM----GNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSDDLK 266 (347)
Q Consensus 212 ~~~~C~ICl~~~~~----~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 266 (347)
+...|+||++.|.. +..++.++|+|.||..||..||..+.+||+||+.+......
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 64 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccc
Confidence 45789999999943 23348999999999999999999999999999999776543
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=4.9e-11 Score=85.26 Aligned_cols=44 Identities=36% Similarity=0.935 Sum_probs=37.6
Q ss_pred ccccccchhhhhhhccCCceEEecCCCcccccchHHHHh---cCCCCCCC
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLE---LQSSCPIC 256 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~---~~~~CP~C 256 (347)
+.+...|+||++.+ .+++.++|+|.||..||..|+. ....||+|
T Consensus 12 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYL---KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBC---SSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCccc---CccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567999999999 6678899999999999999954 56789998
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.02 E-value=7.8e-11 Score=101.43 Aligned_cols=49 Identities=29% Similarity=0.631 Sum_probs=43.9
Q ss_pred ccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCC-CCCCCCcccCCC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQS-SCPICRYQLPSD 263 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~~ 263 (347)
+...|+||++.| .+++.++|+|.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELV---YQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBC---SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhh---cCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 457899999999 7889999999999999999998654 899999998765
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=1e-10 Score=85.98 Aligned_cols=53 Identities=19% Similarity=0.430 Sum_probs=41.7
Q ss_pred cccchhhhh-hhccCCc-eEEecCCCcccccchHHHHhc-CCCCCCCCcccCCCCC
Q 036250 213 DLQCAVCLE-EFVMGNE-AKEMPCKHKFHGECIMPWLEL-QSSCPICRYQLPSDDL 265 (347)
Q Consensus 213 ~~~C~ICl~-~~~~~~~-~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~~~~ 265 (347)
+..|+||++ .+..... ++.++|+|.||..||..|+.. ...||+||..+...+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 468999999 7754322 256799999999999999764 4679999999876654
No 41
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.00 E-value=8.9e-11 Score=91.51 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=46.6
Q ss_pred ccccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCCC
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSDD 264 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~ 264 (347)
+.+...|+||++.| .+++.++|||.|+..||..||..+.+||+|+..+...+
T Consensus 11 ~p~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 11 APDEFRDPLMDTLM---TDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp CCTTTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CchheECcccCchh---cCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 34567999999999 88999999999999999999998899999999886553
No 42
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.00 E-value=1.5e-10 Score=93.14 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=47.1
Q ss_pred cccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCCCC
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSDDL 265 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 265 (347)
.+...|+||++.| .+++.++|||.|+..||..||..+.+||+||.++...++
T Consensus 27 p~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 27 PDEFRDPLMDTLM---TDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESML 78 (100)
T ss_dssp STTTBCTTTCSBC---SSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSS
T ss_pred cHhhCCcCccCcc---cCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhc
Confidence 4567999999999 899999999999999999999988999999999976544
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.99 E-value=8.7e-11 Score=102.10 Aligned_cols=49 Identities=33% Similarity=0.832 Sum_probs=42.8
Q ss_pred cccccchhhhhhhccCCceEEe-cCCCcccccchHHHHhc-CCCCCCCCcccCC
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLEL-QSSCPICRYQLPS 262 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~ 262 (347)
.+...|+||++.| ..++.+ +|+|.||..||..||.. +..||+||..+..
T Consensus 52 ~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDML---KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBC---SSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHh---hCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3456899999999 667777 89999999999999987 7789999999854
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.99 E-value=4.3e-11 Score=98.02 Aligned_cols=52 Identities=33% Similarity=0.734 Sum_probs=45.2
Q ss_pred ccccccchhhhhhhccCCceEEecCCCcccccchHHHHhc-CCCCCCCCcccCCCC
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLEL-QSSCPICRYQLPSDD 264 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~~~ 264 (347)
+.+...|+||++.| .+++.++|+|.||..||..|+.. ...||+||..+...+
T Consensus 20 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 20 FVKSISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHHHTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred ccCCCCCCCCCcHh---cCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 34457899999999 77889999999999999999987 678999999987654
No 45
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.99 E-value=1.6e-10 Score=92.54 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=47.4
Q ss_pred ccccccchhhhhhhccCCceEEecCC-CcccccchHHHHhcCCCCCCCCcccCCCCC
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEMPCK-HKFHGECIMPWLELQSSCPICRYQLPSDDL 265 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~lpC~-H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 265 (347)
+.+...|+||++.| .+++.++|+ |.|+..||..||..+.+||+||.+|...++
T Consensus 19 ~p~~~~CpI~~~~m---~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 19 ACDEFLDPIMSTLM---CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp CCTTTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred CcHhcCCcCccccc---cCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence 34567999999999 899999999 999999999999988899999999976544
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.98 E-value=8.7e-11 Score=96.70 Aligned_cols=51 Identities=27% Similarity=0.704 Sum_probs=44.7
Q ss_pred ccccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCC-CCCCCCcccCCC
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQS-SCPICRYQLPSD 263 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~~ 263 (347)
+.+...|+||++.+ ..++.++|+|.||..||..|+.... +||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhh---cCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 34567999999999 7789999999999999999997765 999999998654
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.98 E-value=4.7e-11 Score=97.63 Aligned_cols=49 Identities=31% Similarity=0.752 Sum_probs=43.2
Q ss_pred cccccchhhhhhhccCCceEEecCCCcccccchHHHHhc-CCCCCCCCcccCC
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLEL-QSSCPICRYQLPS 262 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~ 262 (347)
.++..|+||++.| .+++.++|+|.||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL---VEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC---SSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCccc---CceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3457899999999 77899999999999999999976 6689999998853
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.94 E-value=1.1e-10 Score=96.56 Aligned_cols=53 Identities=23% Similarity=0.669 Sum_probs=45.0
Q ss_pred ccccchhhhhhhcc----CCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCCC
Q 036250 212 QDLQCAVCLEEFVM----GNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSDD 264 (347)
Q Consensus 212 ~~~~C~ICl~~~~~----~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~ 264 (347)
+...|+||++.|.. +..++.++|+|.||..||.+||..+.+||+||..+..++
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 35689999999953 233488899999999999999999999999999987654
No 49
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=2.7e-10 Score=86.73 Aligned_cols=50 Identities=20% Similarity=0.563 Sum_probs=41.2
Q ss_pred cccchhhhhhhccCCceEEecCCCcccccchHHHHhcC--CCCCCCCcccCCCC
Q 036250 213 DLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQ--SSCPICRYQLPSDD 264 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~--~~CP~CR~~l~~~~ 264 (347)
...|+||++.|..+. +-..|+|.||..||.+||+.+ .+||+||.++..+.
T Consensus 15 i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 15 VKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 468999999997543 333799999999999999877 78999999876543
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=1.7e-10 Score=82.71 Aligned_cols=46 Identities=33% Similarity=0.689 Sum_probs=39.9
Q ss_pred ccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
+...|+||++.| .+++.|+|+|.||..||..| ...||+||+.+...
T Consensus 5 ~~~~C~IC~~~~---~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEA---KCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSC---BCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCcc---CCeEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 457899999999 67889999999999999884 56899999988654
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=2.2e-10 Score=94.16 Aligned_cols=49 Identities=24% Similarity=0.638 Sum_probs=42.9
Q ss_pred cccccchhhhhhhccCCceEEe-cCCCcccccchHHHHhcCCCCCCCCcccCCCC
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQSSCPICRYQLPSDD 264 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~ 264 (347)
.+...|+||++.| ..++.+ +|+|.||..||..|+. ..||+||..+...+
T Consensus 20 ~~~~~C~IC~~~~---~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 20 EKLLRCSRCTNIL---REPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp HHTTSCSSSCSCC---SSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred hhCCCCCCCChHh---hCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 4567999999999 778888 9999999999999998 78999999985543
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.87 E-value=3.4e-10 Score=96.47 Aligned_cols=51 Identities=16% Similarity=0.481 Sum_probs=44.2
Q ss_pred ccccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCC-CCCCCCcccCCC
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQS-SCPICRYQLPSD 263 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~~ 263 (347)
+.+...|+||++.| .+++.++|+|.||..||..|+.... .||+||.++..+
T Consensus 28 l~~~~~C~IC~~~~---~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVL---RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhh---cCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 45567999999999 7889999999999999999998665 899999987543
No 53
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.84 E-value=1.4e-09 Score=83.54 Aligned_cols=56 Identities=21% Similarity=0.549 Sum_probs=43.4
Q ss_pred ccccccchhhhhhhccCCceEEec--CCCcccccchHHHHhc-CCCCCCCCcccCCCCCc
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEMP--CKHKFHGECIMPWLEL-QSSCPICRYQLPSDDLK 266 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~lp--C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~~~~~ 266 (347)
+.++..|+||++.+.. .+++.+| |||.||..||..|+.. ...||+||+.+......
T Consensus 8 ~~~~~~CpICle~~~~-~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEI-DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCBCTTTCCBCCT-TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cccCCcCCccCccCcc-ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 4566799999998853 2344555 9999999999999853 56899999999776543
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.81 E-value=1.3e-09 Score=80.31 Aligned_cols=47 Identities=17% Similarity=0.354 Sum_probs=41.4
Q ss_pred ccccchhhhhhhccCCceEEe--cCCCc-ccccchHHHHhcCCCCCCCCcccC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEM--PCKHK-FHGECIMPWLELQSSCPICRYQLP 261 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~l--pC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (347)
++..|.||++.+ .+++.+ ||+|. ||..|+..|+..+..||+||..+.
T Consensus 7 ~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRP---KNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSC---SCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCC---CCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999998 667766 99999 899999999998899999999874
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=1e-09 Score=101.85 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=45.4
Q ss_pred cccccccchhhhhhhccCCceEEecCCCcccccchHHHHhcC-CCCCCCCcccCCCC
Q 036250 209 AIDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQ-SSCPICRYQLPSDD 264 (347)
Q Consensus 209 ~~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~l~~~~ 264 (347)
.+.....|+||++.| .+++.+||||.||..||..||... .+||+||.++...+
T Consensus 204 ~~~~~~~c~i~~~~~---~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 204 DIPDYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCCSTTBCTTTCSBC---SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CCCcccCCcCcCCHh---cCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 344567999999999 899999999999999999999764 45999999986543
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.80 E-value=7.9e-10 Score=83.71 Aligned_cols=45 Identities=20% Similarity=0.567 Sum_probs=40.0
Q ss_pred cccccchhhhhhhccCCceEEecCCCc-ccccchHHHHhcCCCCCCCCcccCC
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEMPCKHK-FHGECIMPWLELQSSCPICRYQLPS 262 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (347)
.++..|.||++.+ .+++.+||+|. ||..|+..| ..||+||..+..
T Consensus 22 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRN---IAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSB---CCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCC---CCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 3456899999999 78999999999 999999998 789999998854
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.76 E-value=2.5e-09 Score=104.98 Aligned_cols=47 Identities=30% Similarity=0.793 Sum_probs=43.0
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHh-cCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLE-LQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~l~~~ 263 (347)
..|+||++.+ .+++.+||+|.||..||..|+. .+.+||+||..+...
T Consensus 333 ~~C~ICle~~---~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSB---CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCC---CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 6899999999 7899999999999999999998 678999999988654
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=1.5e-09 Score=85.96 Aligned_cols=51 Identities=24% Similarity=0.608 Sum_probs=42.8
Q ss_pred ccccchhhhhhhccCCceEEec-CCCcccccchHHHHhcC------CCCCC--CCcc-cCCCCC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMP-CKHKFHGECIMPWLELQ------SSCPI--CRYQ-LPSDDL 265 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~------~~CP~--CR~~-l~~~~~ 265 (347)
+.+.|+||++.| .+++.++ |+|.|+..||..||..+ .+||+ |+.. +...++
T Consensus 6 ~~~~CPI~~~~~---~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 6 SGFTCPITKEEM---KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SCCBCTTTCSBC---SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGE
T ss_pred cEeECcCcCchh---cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhC
Confidence 457899999999 8899997 99999999999999754 48999 9876 655443
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.71 E-value=4.1e-09 Score=77.39 Aligned_cols=46 Identities=20% Similarity=0.428 Sum_probs=40.4
Q ss_pred cccchhhhhhhccCCceEEe--cCCCc-ccccchHHHHhcCCCCCCCCcccC
Q 036250 213 DLQCAVCLEEFVMGNEAKEM--PCKHK-FHGECIMPWLELQSSCPICRYQLP 261 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~l--pC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (347)
...|.||++.+ .+++.+ ||+|. ||..|+..|+.....||+||.++.
T Consensus 7 ~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRP---RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSB---SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcC---CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 45899999988 666666 99999 999999999988889999999884
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.70 E-value=3e-09 Score=92.70 Aligned_cols=51 Identities=27% Similarity=0.700 Sum_probs=44.5
Q ss_pred ccccccchhhhhhhccCCceEEecCCCcccccchHHHHhcC-CCCCCCCcccCCC
Q 036250 210 IDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQ-SSCPICRYQLPSD 263 (347)
Q Consensus 210 ~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~l~~~ 263 (347)
+.+.+.|+||++.| ..++.++|+|.||..||..|+... .+||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhh---cCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 44567999999999 778999999999999999999764 4899999988664
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.65 E-value=9.6e-09 Score=90.86 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=45.6
Q ss_pred cccccccchhhhhhhccCCceEEecCCCcccccchHHHHhcC-CCCCCCCcccCCCC
Q 036250 209 AIDQDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQ-SSCPICRYQLPSDD 264 (347)
Q Consensus 209 ~~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~l~~~~ 264 (347)
.+.+...|+||++.| .+|+.+||||.|+..||..||..+ .+||+|+.++...+
T Consensus 102 ~ip~~f~CPI~~elm---~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 102 EIPDYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CCCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCcHhhcccCccccC---CCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 344567999999999 889999999999999999999764 46999999886653
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=8.1e-09 Score=78.16 Aligned_cols=45 Identities=20% Similarity=0.572 Sum_probs=38.3
Q ss_pred ccccchhhhhhhccCCceEEecCCCc-ccccchHHHHhcCCCCCCCCcccCCC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCKHK-FHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
+...|+||++.+ .+++.+||+|. ||..|+.. ...||+||..+...
T Consensus 24 ~~~~C~IC~~~~---~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRN---IAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSC---CCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCC---CCEEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 345899999999 77889999999 99999954 37899999988653
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.48 E-value=1.9e-08 Score=77.24 Aligned_cols=45 Identities=31% Similarity=0.694 Sum_probs=39.2
Q ss_pred ccccchhhhhhhccCCceEEecCCCc-ccccchHHHHhcCCCCCCCCcccCCC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCKHK-FHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
+...|.||++.+ .+++.+||+|. ||..|+..| ..||+||..+...
T Consensus 17 ~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEE---INSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSB---CCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCccc---CcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 346899999998 78999999999 999999887 3899999988654
No 64
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.44 E-value=4.2e-08 Score=95.18 Aligned_cols=45 Identities=29% Similarity=0.697 Sum_probs=40.2
Q ss_pred cccccchhhhhhhccCCceEEecCCCc-ccccchHHHHhcCCCCCCCCcccCC
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEMPCKHK-FHGECIMPWLELQSSCPICRYQLPS 262 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (347)
.++..|+||++.+ ..++.+||+|. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~---~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKE---VSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSB---CCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcC---CceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4567999999999 78999999999 999999988 689999998854
No 65
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.44 E-value=2.8e-08 Score=95.55 Aligned_cols=52 Identities=25% Similarity=0.742 Sum_probs=39.7
Q ss_pred ccccchhhhhhhcc-CCceE----EecCCCcccccchHHHHhcC-----------CCCCCCCcccCCC
Q 036250 212 QDLQCAVCLEEFVM-GNEAK----EMPCKHKFHGECIMPWLELQ-----------SSCPICRYQLPSD 263 (347)
Q Consensus 212 ~~~~C~ICl~~~~~-~~~~~----~lpC~H~Fh~~Ci~~Wl~~~-----------~~CP~CR~~l~~~ 263 (347)
...+|+||++.+.. +.-+. ..+|+|.||..||.+||... ++||+||+++...
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 34589999999976 32221 23699999999999999652 4599999988654
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=6.3e-08 Score=72.18 Aligned_cols=45 Identities=24% Similarity=0.651 Sum_probs=38.7
Q ss_pred ccccchhhhhhhccCCceEEecCCCc-ccccchHHHHhcCCCCCCCCcccCCC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCKHK-FHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
+...|.||++.+ ..++.+||+|. ||..|+.. ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGT---VNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSC---CCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCC---CCEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 356899999998 78899999999 99999973 57899999988653
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.44 E-value=4.5e-08 Score=71.55 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=45.0
Q ss_pred ccchhhhhhhccCCceEEe-cCCCcccccchHHHHhcCCCCCCCCcccCCCCCc
Q 036250 214 LQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQSSCPICRYQLPSDDLK 266 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 266 (347)
..|+||++.+ .+++.+ +|||+|...||.+||..+.+||+++.+|..+++.
T Consensus 4 ~~CpIs~~~m---~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 4 MLCAISGKVP---RRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp CCCTTTCSCC---SSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred EEecCCCCCC---CCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence 5799999999 788999 8999999999999998888999999999776544
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.35 E-value=1.3e-07 Score=68.87 Aligned_cols=47 Identities=26% Similarity=0.682 Sum_probs=36.9
Q ss_pred ccccchhhhhhhccCCceEEecCC--C---cccccchHHHHhc--CCCCCCCCcccC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCK--H---KFHGECIMPWLEL--QSSCPICRYQLP 261 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~--H---~Fh~~Ci~~Wl~~--~~~CP~CR~~l~ 261 (347)
+...|.||++.. ....++||. | .||..||.+|+.. +.+||+|++.+.
T Consensus 5 ~~~~CrIC~~~~---~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL---GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC---SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC---CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 356899999974 333478954 4 9999999999964 568999999874
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.34 E-value=7.8e-08 Score=89.48 Aligned_cols=53 Identities=21% Similarity=0.498 Sum_probs=44.4
Q ss_pred cccccchhhhhhhccCCceEEe-cCCCcccccchHHHHhcC--CCCCC--CCcccCCCCCc
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQ--SSCPI--CRYQLPSDDLK 266 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~--~~CP~--CR~~l~~~~~~ 266 (347)
.....|+||++.| .+++.. .|||.||..||..|+..+ ..||+ |++.+...++.
T Consensus 179 ~~el~CPIcl~~f---~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 179 KIELTCPITCKPY---EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp BCCSBCTTTSSBC---SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred ceeeECcCccCcc---cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence 3467999999999 788875 899999999999999764 46999 99988765543
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.18 E-value=2.8e-07 Score=72.52 Aligned_cols=50 Identities=30% Similarity=0.636 Sum_probs=37.7
Q ss_pred cccchhhhhhhccCCceEEecCCCcccccchHHHHhcC--------CCCCC--CCcc--cCC
Q 036250 213 DLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQ--------SSCPI--CRYQ--LPS 262 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~--------~~CP~--CR~~--l~~ 262 (347)
..+|+||++.+.........+|+|.||..||..++..+ -.||. |+.. +..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 46899999998543333334799999999999999631 26999 9987 543
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.79 E-value=6.7e-06 Score=65.41 Aligned_cols=47 Identities=23% Similarity=0.471 Sum_probs=38.6
Q ss_pred cchhhhhhhccCCceEEecCCCcccccchHHHHhc-CCCCCCCCcccCCC
Q 036250 215 QCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLEL-QSSCPICRYQLPSD 263 (347)
Q Consensus 215 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~~ 263 (347)
.|.+|--.+. .-.+.+||+|+||.+|+..|.++ .++||.|+.++..-
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 4788877774 45788999999999999999854 57899999988543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.41 E-value=4.1e-05 Score=70.47 Aligned_cols=51 Identities=22% Similarity=0.591 Sum_probs=40.2
Q ss_pred cccchhhhhhhccCCceEEec-CCCcccccchHHHHhcCC--CCCCCCcccCCCCCc
Q 036250 213 DLQCAVCLEEFVMGNEAKEMP-CKHKFHGECIMPWLELQS--SCPICRYQLPSDDLK 266 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~--~CP~CR~~l~~~~~~ 266 (347)
...|.||.+.+..| .+-+ |+|.||..|+..|+..+. .||.|+...+...+.
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence 35899999999654 3333 999999999999997654 899999987665433
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.58 E-value=0.023 Score=44.52 Aligned_cols=52 Identities=25% Similarity=0.549 Sum_probs=41.1
Q ss_pred cccccccccchhhhhhhccCCceEEecC-CCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 207 TVAIDQDLQCAVCLEEFVMGNEAKEMPC-KHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 207 ~~~~~~~~~C~ICl~~~~~~~~~~~lpC-~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
...+-.-..|..|+-.. . -.+.| .|++|..||.-.|.....||+|+++|+..
T Consensus 22 d~s~~G~~nCKsCWf~~---k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 22 DATHLGPQFCKSCWFEN---K--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCSCCCCCCSSCSCC---S--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CccccCcccChhhcccc---C--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 33344456899999776 3 24445 59999999999999999999999999876
No 74
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=91.40 E-value=0.12 Score=41.91 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=27.6
Q ss_pred CCcEeeecCCceeeecCCCCc-cCCCCCCCceEecCC
Q 036250 6 VGSYWCYICSRMVNPRMEAGI-KCPFCETGFVEQMSS 41 (347)
Q Consensus 6 ~~rywCh~C~~~V~p~~~~e~-~CP~C~sGFiEE~~~ 41 (347)
...|||..|...+..... .. +||.|++..++-+..
T Consensus 71 p~~~~C~~CG~~~e~~~~-~~~~CP~Cgs~~~~i~~G 106 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNAL-DYGVCEKCHSKNVIITQG 106 (119)
T ss_dssp CCEEECSSSSCEECSCCS-TTCCCSSSSSCCCEEEES
T ss_pred cceEEcCCCCCEEeCCCC-CCCcCccccCCCcEEecC
Confidence 678999999999875433 57 899999997775543
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.94 E-value=0.053 Score=42.26 Aligned_cols=32 Identities=19% Similarity=0.577 Sum_probs=25.2
Q ss_pred cccchhhhhhhccCCceEE--ecCCCcccccchHHH
Q 036250 213 DLQCAVCLEEFVMGNEAKE--MPCKHKFHGECIMPW 246 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~--lpC~H~Fh~~Ci~~W 246 (347)
+..|.||++.+. ..++. +.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~--~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPA--QDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSC--CBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCC--CCceEECCcCChHHhHHHCHHH
Confidence 468999997642 34455 899999999999983
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=86.79 E-value=0.22 Score=53.80 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=45.0
Q ss_pred ccccchhhhhhhccCCceEEecCC-CcccccchHHHHhcCCCCCCCCcccCCCCC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCK-HKFHGECIMPWLELQSSCPICRYQLPSDDL 265 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~-H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 265 (347)
+...|+|-++.+ .+|+.+|.| +.|-..+|.+||..+.+||+=|.+|...+.
T Consensus 890 ~~F~cPIs~~lM---~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 890 DEFLDPLMYTIM---KDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV 941 (968)
T ss_dssp GGGBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred HHhCCcchhhHH---hCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence 356899999999 899999997 589999999999989999999999976543
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=85.16 E-value=0.31 Score=35.52 Aligned_cols=43 Identities=23% Similarity=0.549 Sum_probs=30.7
Q ss_pred cccchhhhhhhccCCceEEe-cCCCcccccchHHHHhcCC----CCCCCCcc
Q 036250 213 DLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQS----SCPICRYQ 259 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 259 (347)
...|.||.+. .++..- .|...||..|+.+.|.... .||.|...
T Consensus 12 ~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3579999753 333222 3899999999999886543 59999754
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.06 E-value=0.4 Score=36.72 Aligned_cols=34 Identities=26% Similarity=0.560 Sum_probs=24.0
Q ss_pred cccccccchhhhhhhccCCceEEec---CCCcccccchHHH
Q 036250 209 AIDQDLQCAVCLEEFVMGNEAKEMP---CKHKFHGECIMPW 246 (347)
Q Consensus 209 ~~~~~~~C~ICl~~~~~~~~~~~lp---C~H~Fh~~Ci~~W 246 (347)
.+..+..|.||--.= .-.++| |+-+||..|+.+.
T Consensus 11 ~~~~D~~C~VC~~~t----~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVWT----AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCC----SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCcccccc----ccceeccccccccccHhhcccc
Confidence 344567899996332 223455 8899999999986
No 79
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=82.95 E-value=0.71 Score=38.53 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=26.0
Q ss_pred CCcEeeecCCceeeecC-----------CC---------CccCCCCCCCceEecC
Q 036250 6 VGSYWCYICSRMVNPRM-----------EA---------GIKCPFCETGFVEQMS 40 (347)
Q Consensus 6 ~~rywCh~C~~~V~p~~-----------~~---------e~~CP~C~sGFiEE~~ 40 (347)
..++||..|........ .. ..+||.|++--++-+.
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~ 122 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVK 122 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEE
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEec
Confidence 57899999999886543 11 4779999998776433
No 80
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=81.53 E-value=0.67 Score=33.57 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=25.8
Q ss_pred CCcEeeecCCceeeecCCCCccCCCCCCCce
Q 036250 6 VGSYWCYICSRMVNPRMEAGIKCPFCETGFV 36 (347)
Q Consensus 6 ~~rywCh~C~~~V~p~~~~e~~CP~C~sGFi 36 (347)
...|-|-.|..+|.....+.+.||.|+.-.+
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RIL 49 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHRVM 49 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCCCC
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcEEE
Confidence 3569999999999877766799999997554
No 81
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=80.75 E-value=0.65 Score=31.55 Aligned_cols=32 Identities=22% Similarity=0.720 Sum_probs=22.2
Q ss_pred CcEeeecCCceeeec----CCCCccCCCCCCCceEec
Q 036250 7 GSYWCYICSRMVNPR----MEAGIKCPFCETGFVEQM 39 (347)
Q Consensus 7 ~rywCh~C~~~V~p~----~~~e~~CP~C~sGFiEE~ 39 (347)
..|-|-.|-++++-. ++ +++||.|+---|.-+
T Consensus 2 ~iY~C~rCg~~fs~~el~~lP-~IrCpyCGyrii~Kv 37 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKVLP-GVRCPYCGYKIIFMV 37 (48)
T ss_dssp ---CCCCTTTTCCCCCSCCCS-SSCCTTTCCSCEECC
T ss_pred cEEEeeccCCCccHHHHhhCC-CcccCccCcEEEEEe
Confidence 468999999998532 35 799999987655544
No 82
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=78.41 E-value=1.5 Score=32.31 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=23.8
Q ss_pred CCcEeeecCCceeeecCCCCccCCCCCC
Q 036250 6 VGSYWCYICSRMVNPRMEAGIKCPFCET 33 (347)
Q Consensus 6 ~~rywCh~C~~~V~p~~~~e~~CP~C~s 33 (347)
...|-|-.|...+.....+.+.||.|+.
T Consensus 26 ~v~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 26 TLKYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CCCEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred eEEEECCCCCCcceeCCCCCccCCCCCc
Confidence 4679999999998877665689999998
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=78.16 E-value=0.94 Score=32.22 Aligned_cols=45 Identities=31% Similarity=0.639 Sum_probs=30.4
Q ss_pred cccccchhhhhhhccCCceEEe-cCCCcccccchHHHHhcC----CCCCCCCcc
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQ----SSCPICRYQ 259 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~----~~CP~CR~~ 259 (347)
..+..|.||... .+...- .|...||..|+.+-|... -.||.|+..
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 345689999873 233222 388899999998865432 259999653
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=77.63 E-value=0.86 Score=32.45 Aligned_cols=46 Identities=26% Similarity=0.500 Sum_probs=30.0
Q ss_pred ccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCC----CCCCCCccc
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQS----SCPICRYQL 260 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~l 260 (347)
.+..|.||.+. +.-+.--.|...||..|+.+-|.... .||.|+...
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 35679999863 22122223889999999987664322 499997643
No 85
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=74.48 E-value=2.3 Score=31.32 Aligned_cols=37 Identities=27% Similarity=0.662 Sum_probs=27.7
Q ss_pred CCCCCCCcEeeecCCceeeec----------------CCCCccCCCCCC---CceEe
Q 036250 1 MGDATVGSYWCYICSRMVNPR----------------MEAGIKCPFCET---GFVEQ 38 (347)
Q Consensus 1 m~~~~~~rywCh~C~~~V~p~----------------~~~e~~CP~C~s---GFiEE 38 (347)
|+.++ ..|-|-.|-=...+. ++++.+||.|+- -|...
T Consensus 1 m~~~m-~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 1 MEIDE-GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSI 56 (70)
T ss_dssp CBCCS-SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCBGGGEEEC
T ss_pred CCCCC-ceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCCHHHceEc
Confidence 66555 479999999887754 566789999997 46553
No 86
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=71.37 E-value=1.1 Score=38.64 Aligned_cols=44 Identities=32% Similarity=0.575 Sum_probs=30.6
Q ss_pred cccchhhhhhhccCCceEEe-cCCCcccccchHHHHhcCC----CCCCCCccc
Q 036250 213 DLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQS----SCPICRYQL 260 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~l 260 (347)
+..|.||.+. |+ ...- .|...||..|+.+-|.... .||.|+..-
T Consensus 4 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4579999854 23 2222 3889999999988775432 599998644
No 87
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=70.61 E-value=1.1 Score=30.37 Aligned_cols=43 Identities=28% Similarity=0.567 Sum_probs=27.0
Q ss_pred cchhhhhhhccCCceEEe-cCCCcccccchHHHHhcCC----CCCCCCc
Q 036250 215 QCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQS----SCPICRY 258 (347)
Q Consensus 215 ~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 258 (347)
.|.||...-.. .....- .|...||..|+.+=|.... .||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888865322 222222 3889999999976554322 4999864
No 88
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=69.68 E-value=1.6 Score=33.60 Aligned_cols=45 Identities=29% Similarity=0.648 Sum_probs=31.1
Q ss_pred cccccchhhhhhhccCCceEEe-cCCCcccccchHHHHhcCC----CCCCCCcc
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQS----SCPICRYQ 259 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 259 (347)
..+..|.||... .+...- .|.-.||..|+.+=|.... .||.|+..
T Consensus 23 ~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345689999964 222222 3888999999988765432 49999764
No 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=68.65 E-value=1.3 Score=39.08 Aligned_cols=44 Identities=30% Similarity=0.506 Sum_probs=30.2
Q ss_pred cccchhhhhhhccCCceEEe-cCCCcccccchHHHHhcCC----CCCCCCccc
Q 036250 213 DLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQS----SCPICRYQL 260 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~l 260 (347)
+..|.||... .+...- .|...||..|+.+.|.... .||.|+..-
T Consensus 7 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4579999743 222222 2889999999988775432 599998643
No 90
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=67.02 E-value=3.1 Score=31.50 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=24.3
Q ss_pred CCcEeeecCCceeeecC-CCCccCCCCCCCceEecC
Q 036250 6 VGSYWCYICSRMVNPRM-EAGIKCPFCETGFVEQMS 40 (347)
Q Consensus 6 ~~rywCh~C~~~V~p~~-~~e~~CP~C~sGFiEE~~ 40 (347)
...+||-.|+..|.... ...++||.|+.-|.=.-.
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~ 58 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCK 58 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSC
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCccccccC
Confidence 45779999999774322 224789999988874433
No 91
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=65.53 E-value=0.91 Score=32.35 Aligned_cols=47 Identities=28% Similarity=0.506 Sum_probs=30.3
Q ss_pred ccccchhhhhhhccCCceEEe-cCCCcccccchHHHHh-----cCCCCCCCCc
Q 036250 212 QDLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLE-----LQSSCPICRY 258 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~-----~~~~CP~CR~ 258 (347)
+...|+||...+..+...+.- .|..-||..|+.--.. ....||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 345799999887433322222 3888999999843221 2456999965
No 92
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=62.07 E-value=1.5 Score=32.18 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=31.5
Q ss_pred cccchhhhhhhccCCceEEe-cCCCcccccchHHHHhc----CCCCCCCCcccC
Q 036250 213 DLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLEL----QSSCPICRYQLP 261 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~----~~~CP~CR~~l~ 261 (347)
...|.||..... +...+.- -|.-.||..|+..-+.. .-.||.|+..+.
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 346999987752 2222222 28889999999765532 335999987664
No 93
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.43 E-value=0.78 Score=31.98 Aligned_cols=44 Identities=27% Similarity=0.616 Sum_probs=28.2
Q ss_pred ccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCC----CCCCCCc
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQS----SCPICRY 258 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 258 (347)
.+..|.||... +.-+.--.|...||..|+.+-|.... .||.|..
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 35679999874 23222223889999999987654322 3777743
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=59.66 E-value=3.2 Score=33.00 Aligned_cols=44 Identities=30% Similarity=0.568 Sum_probs=28.1
Q ss_pred cchhhhhhhccCCceEEe-cCCCcccccchHHHHhcCC----CCCCCCc
Q 036250 215 QCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQS----SCPICRY 258 (347)
Q Consensus 215 ~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 258 (347)
.|.||...-........- .|...||..|+.+-|.... .||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888642211222222 3889999999987665432 5999974
No 95
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=59.60 E-value=6.3 Score=27.46 Aligned_cols=28 Identities=29% Similarity=0.885 Sum_probs=21.7
Q ss_pred CcEeeecCCceeeec----------------CCCCccCCCCCCC
Q 036250 7 GSYWCYICSRMVNPR----------------MEAGIKCPFCETG 34 (347)
Q Consensus 7 ~rywCh~C~~~V~p~----------------~~~e~~CP~C~sG 34 (347)
.+|-|-.|-=...+. ++++.+||.|+-+
T Consensus 2 ~~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 2 KKYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp CCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred CceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 478899998777663 5667899999974
No 96
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=59.47 E-value=4.7 Score=35.14 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=31.9
Q ss_pred ccchhhhhhhccCCc---eEEe-cCCCcccccchHH------HHh-----cCCCCCCCCccc
Q 036250 214 LQCAVCLEEFVMGNE---AKEM-PCKHKFHGECIMP------WLE-----LQSSCPICRYQL 260 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~---~~~l-pC~H~Fh~~Ci~~------Wl~-----~~~~CP~CR~~l 260 (347)
..|+||...+..++. .+.- -|...||..|+.- -+. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999999876542 2222 2899999999832 111 156899998754
No 97
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=59.46 E-value=3.1 Score=32.83 Aligned_cols=46 Identities=24% Similarity=0.496 Sum_probs=29.4
Q ss_pred ccccchhhhhhhccCCceEEecCCCcccccchHHHHhc----CCCCCCCC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLEL----QSSCPICR 257 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~----~~~CP~CR 257 (347)
.+..|.||.+.=+..+-+.--.|...||..||...+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 45689999876422121333458899999999887642 12466664
No 98
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=59.12 E-value=8.1 Score=29.21 Aligned_cols=28 Identities=18% Similarity=0.487 Sum_probs=22.4
Q ss_pred CCcEeeecCCceeeec----------------CCCCccCCCCCC
Q 036250 6 VGSYWCYICSRMVNPR----------------MEAGIKCPFCET 33 (347)
Q Consensus 6 ~~rywCh~C~~~V~p~----------------~~~e~~CP~C~s 33 (347)
...|-|-.|-=...+. ++++.+||.|+-
T Consensus 25 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp CCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred cceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 3578999999888763 566789999987
No 99
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=58.63 E-value=4.2 Score=39.33 Aligned_cols=51 Identities=24% Similarity=0.549 Sum_probs=32.7
Q ss_pred cccchhhhhhhccCCceEEecCCCcccccchHHHH---hcCC--CCCCCCcccCCCCCc
Q 036250 213 DLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWL---ELQS--SCPICRYQLPSDDLK 266 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl---~~~~--~CP~CR~~l~~~~~~ 266 (347)
.+.|+|-+..+. .-++-..|.|+-|.+- ..|| .... .||+|.+.+...++.
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred eecCCCcccccc--ccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 368999888873 3445556999854443 3344 3333 599999988665543
No 100
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=57.68 E-value=6.3 Score=29.70 Aligned_cols=30 Identities=20% Similarity=0.492 Sum_probs=23.1
Q ss_pred EeeecCCceeeecCCCCccCCCCCCCceEecC
Q 036250 9 YWCYICSRMVNPRMEAGIKCPFCETGFVEQMS 40 (347)
Q Consensus 9 ywCh~C~~~V~p~~~~e~~CP~C~sGFiEE~~ 40 (347)
+.||.|-..... +. -..||.|+..=+.-+.
T Consensus 16 LrC~aCf~~t~~-~~-k~FCp~CGn~TL~Rvs 45 (79)
T 2con_A 16 LRCHGCFKTTSD-MN-RVFCGHCGNKTLKKVS 45 (79)
T ss_dssp EECSSSCCEESC-SS-CCSCSSSCCSCCEEEE
T ss_pred eEecccceECCC-cc-cccccccCcccceEEE
Confidence 469999998853 33 5889999998777664
No 101
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=57.63 E-value=7.3 Score=26.46 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=26.7
Q ss_pred cchhhhhhhccCCceEEe--cCCCcccccchHHHH----hcCCCCCCCC
Q 036250 215 QCAVCLEEFVMGNEAKEM--PCKHKFHGECIMPWL----ELQSSCPICR 257 (347)
Q Consensus 215 ~C~ICl~~~~~~~~~~~l--pC~H~Fh~~Ci~~Wl----~~~~~CP~CR 257 (347)
.|.||...+..+...+.- .|.--||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477888887443333332 377789999983211 2456799885
No 102
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=57.42 E-value=7.9 Score=26.06 Aligned_cols=28 Identities=25% Similarity=0.757 Sum_probs=21.6
Q ss_pred CcEeeecCCceeee---------cCCCCccCCCCCCC
Q 036250 7 GSYWCYICSRMVNP---------RMEAGIKCPFCETG 34 (347)
Q Consensus 7 ~rywCh~C~~~V~p---------~~~~e~~CP~C~sG 34 (347)
..|-|-.|--...+ .++++.+||.|+.+
T Consensus 3 ~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred CEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 56889999877765 35667899999864
No 103
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=56.79 E-value=4.8 Score=31.95 Aligned_cols=32 Identities=19% Similarity=0.594 Sum_probs=23.9
Q ss_pred CcEeeecCCceeeecCCCCccCCCCCCCceEe
Q 036250 7 GSYWCYICSRMVNPRMEAGIKCPFCETGFVEQ 38 (347)
Q Consensus 7 ~rywCh~C~~~V~p~~~~e~~CP~C~sGFiEE 38 (347)
..|-|-.|--...-.+..-..||.|.|..||+
T Consensus 66 ~p~~C~~CG~~F~~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 66 KPAQCRKCGFVFKAEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp CCCBBTTTCCBCCCCSSCCSSCSSSCCCCBCC
T ss_pred ECcChhhCcCeecccCCCCCCCcCCCCCccCC
Confidence 45779999877733333348899999999986
No 104
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=56.09 E-value=4.8 Score=38.77 Aligned_cols=52 Identities=17% Similarity=0.368 Sum_probs=33.0
Q ss_pred cccchhhhhhhccCCceEEecCCCccccc--chHHHHhcCC--CCCCCCcccCCCCCc
Q 036250 213 DLQCAVCLEEFVMGNEAKEMPCKHKFHGE--CIMPWLELQS--SCPICRYQLPSDDLK 266 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~--Ci~~Wl~~~~--~CP~CR~~l~~~~~~ 266 (347)
.+.|+|-+..+. .-++-..|.|+-|.+ -+..+..... .||+|.+.+..+++.
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 368999888883 334555699984433 3333333333 599999988766554
No 105
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=55.42 E-value=8.6 Score=29.48 Aligned_cols=28 Identities=18% Similarity=0.542 Sum_probs=22.5
Q ss_pred CCcEeeecCCceeee----------------cCCCCccCCCCCC
Q 036250 6 VGSYWCYICSRMVNP----------------RMEAGIKCPFCET 33 (347)
Q Consensus 6 ~~rywCh~C~~~V~p----------------~~~~e~~CP~C~s 33 (347)
...|-|-.|-=...+ .++++.+||.|+-
T Consensus 33 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 33 YLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred CceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 467899999987776 3566789999987
No 106
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.49 E-value=7.9 Score=28.62 Aligned_cols=46 Identities=26% Similarity=0.551 Sum_probs=28.6
Q ss_pred ccchhhhhhhccCCceEEe-cCCCcccccchHHHHh-----cCCCCCCCCccc
Q 036250 214 LQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLE-----LQSSCPICRYQL 260 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~l 260 (347)
..| ||...+..+...+.- -|..-||..|+.--.. ....||.|+...
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 456 898877422322222 3888999999832211 345799998754
No 107
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.62 E-value=1.1 Score=34.68 Aligned_cols=48 Identities=23% Similarity=0.447 Sum_probs=30.9
Q ss_pred cccccchhhhhhhccCCceEEe-cCCCcccccchHHHHhcCC----CCCCCCcc
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQS----SCPICRYQ 259 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 259 (347)
.+...|.||...-.. ...+.- -|...||..|+.+=|.... .||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 345679999876421 122222 3889999999986554322 49999664
No 108
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=53.62 E-value=1.6 Score=30.80 Aligned_cols=45 Identities=29% Similarity=0.634 Sum_probs=29.6
Q ss_pred cccchhhhhhhccCCceEEecCCCcccccchHHHHhcCC----CCCCCCccc
Q 036250 213 DLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQS----SCPICRYQL 260 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~l 260 (347)
+..|.||... +.-+.--.|...||..|+.+-|.... .||.|....
T Consensus 5 ~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4579999874 22222223889999999987664322 488886644
No 109
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=52.98 E-value=9.8 Score=26.18 Aligned_cols=26 Identities=23% Similarity=0.694 Sum_probs=20.8
Q ss_pred cEeeecCCceeee----------------cCCCCccCCCCCC
Q 036250 8 SYWCYICSRMVNP----------------RMEAGIKCPFCET 33 (347)
Q Consensus 8 rywCh~C~~~V~p----------------~~~~e~~CP~C~s 33 (347)
+|-|-.|-=...+ .++++.+||.|+-
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGA 43 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCC
Confidence 5788888877776 3677789999986
No 110
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=52.49 E-value=4.5 Score=31.42 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=27.4
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhc---CCCCCCCCc
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLEL---QSSCPICRY 258 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~---~~~CP~CR~ 258 (347)
..| ||......+.-+.--.|.-.||..|+.+=+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 88776643322222238899999999654322 236999963
No 111
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=51.89 E-value=2 Score=32.93 Aligned_cols=55 Identities=24% Similarity=0.330 Sum_probs=32.9
Q ss_pred cccccccchhhhhhhcc-CCceEEe-cCCCcccccchHHHHhc--CCCCCCCCcccCCC
Q 036250 209 AIDQDLQCAVCLEEFVM-GNEAKEM-PCKHKFHGECIMPWLEL--QSSCPICRYQLPSD 263 (347)
Q Consensus 209 ~~~~~~~C~ICl~~~~~-~~~~~~l-pC~H~Fh~~Ci~~Wl~~--~~~CP~CR~~l~~~ 263 (347)
.+.++..|.||...-.. ....+.- .|.-.||..|+.+-+.. .-.||.|.......
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 34456789999865311 1122222 27889999999764422 22499997755443
No 112
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=51.65 E-value=12 Score=26.06 Aligned_cols=27 Identities=22% Similarity=0.636 Sum_probs=21.4
Q ss_pred CcEeeecCCceeeec----------------CCCCccCCCCCC
Q 036250 7 GSYWCYICSRMVNPR----------------MEAGIKCPFCET 33 (347)
Q Consensus 7 ~rywCh~C~~~V~p~----------------~~~e~~CP~C~s 33 (347)
..|-|-.|-=...+. ++++.+||.|+-
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 2 RKWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGV 44 (55)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCC
T ss_pred CcEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 468899998877763 566789999987
No 113
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=51.11 E-value=2.7 Score=31.44 Aligned_cols=25 Identities=40% Similarity=0.754 Sum_probs=18.6
Q ss_pred CCCcccccchHHHHhcC-----CCCCCCCc
Q 036250 234 CKHKFHGECIMPWLELQ-----SSCPICRY 258 (347)
Q Consensus 234 C~H~Fh~~Ci~~Wl~~~-----~~CP~CR~ 258 (347)
|...||..|+.+-|... =.||.|+.
T Consensus 47 C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 47 CDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCccCcccCCCcccCCCCCCceECcCccc
Confidence 88899999998766432 25888875
No 114
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.43 E-value=2.6 Score=32.21 Aligned_cols=49 Identities=29% Similarity=0.580 Sum_probs=32.1
Q ss_pred cccchhhhhhhccC-CceEEe-cCCCcccccchHHHHhc--------CCCCCCCCcccC
Q 036250 213 DLQCAVCLEEFVMG-NEAKEM-PCKHKFHGECIMPWLEL--------QSSCPICRYQLP 261 (347)
Q Consensus 213 ~~~C~ICl~~~~~~-~~~~~l-pC~H~Fh~~Ci~~Wl~~--------~~~CP~CR~~l~ 261 (347)
+..|.||...-... ..+..- -|...||..|+.+-|.. .-.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 46899999763221 222222 28899999999887642 225999977554
No 115
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=49.84 E-value=4.2 Score=35.40 Aligned_cols=43 Identities=30% Similarity=0.631 Sum_probs=28.8
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcC----CCCCCCCcc
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQ----SSCPICRYQ 259 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~----~~CP~CR~~ 259 (347)
..|.||.+. |.-+.--.|...||..|+.+=|... -.||.|+..
T Consensus 3 ~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 469999854 2322222388999999998766432 249999765
No 116
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=47.99 E-value=2.7 Score=30.23 Aligned_cols=43 Identities=30% Similarity=0.602 Sum_probs=29.2
Q ss_pred ccccchhhhhhhccCCceEEe-cCCCcccccchHHHHhcCC----CCCCCCc
Q 036250 212 QDLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQS----SCPICRY 258 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 258 (347)
.+..|.||.+. .+...- .|...||..|+.+-|.... .||.|..
T Consensus 7 ~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 35689999864 223222 3889999999987664322 4999965
No 117
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=47.29 E-value=11 Score=28.26 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=23.9
Q ss_pred cEeeecCCceeeecCCCCc--cCCCCCCCceEecC
Q 036250 8 SYWCYICSRMVNPRMEAGI--KCPFCETGFVEQMS 40 (347)
Q Consensus 8 rywCh~C~~~V~p~~~~e~--~CP~C~sGFiEE~~ 40 (347)
.-+|..|...-...-. .+ +||.|+|-=...+.
T Consensus 37 ~I~CnDC~~~s~v~~h-~lg~kC~~C~SyNTr~~~ 70 (79)
T 2k2d_A 37 DILCNDCNGRSTVQFH-ILGMKCKICESYNTAQAG 70 (79)
T ss_dssp EEEESSSCCEEEEECC-TTCCCCTTTSCCCEEESC
T ss_pred EEECCCCCCCccCCce-eecccCcCCCCcCeEecC
Confidence 4689999998765433 45 89999997666664
No 118
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=47.13 E-value=13 Score=25.48 Aligned_cols=27 Identities=26% Similarity=0.775 Sum_probs=19.5
Q ss_pred CcEeeecCCceeeec----------------CCCCccCCCCCC
Q 036250 7 GSYWCYICSRMVNPR----------------MEAGIKCPFCET 33 (347)
Q Consensus 7 ~rywCh~C~~~V~p~----------------~~~e~~CP~C~s 33 (347)
.+|-|-.|-=...+. ++++.+||.|+.
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 2 DIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGA 44 (52)
T ss_dssp CCEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCC
T ss_pred CcEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCC
Confidence 367788887666654 355778999986
No 119
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=46.38 E-value=4.5 Score=30.64 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=28.0
Q ss_pred cccchhhhhhhccCCceEEec--CCCcccccchHHHHhc
Q 036250 213 DLQCAVCLEEFVMGNEAKEMP--CKHKFHGECIMPWLEL 249 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~lp--C~H~Fh~~Ci~~Wl~~ 249 (347)
.+.|.+|.+.++. ..-++-| =.|.||..|-...++.
T Consensus 15 ~l~CtlC~erLEd-tHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLED-THFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSS-TTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhcc-CceeeCCCccCCeeeccccHHHHHh
Confidence 4689999999954 4455555 4799999999988865
No 120
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=45.63 E-value=10 Score=27.83 Aligned_cols=19 Identities=26% Similarity=0.815 Sum_probs=15.0
Q ss_pred eeecCCceeeecCCCCccCCCCCC
Q 036250 10 WCYICSRMVNPRMEAGIKCPFCET 33 (347)
Q Consensus 10 wCh~C~~~V~p~~~~e~~CP~C~s 33 (347)
=|-.|.+-| .+-.||.|++
T Consensus 13 AC~~C~~~~-----~~~~CPnC~s 31 (69)
T 1ryq_A 13 ACRHCHYIT-----SEDRCPVCGS 31 (69)
T ss_dssp EETTTCBEE-----SSSSCTTTCC
T ss_pred hHHhCCccc-----cCCcCCCccC
Confidence 488999955 3678999995
No 121
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.34 E-value=5.6 Score=29.62 Aligned_cols=43 Identities=28% Similarity=0.535 Sum_probs=26.9
Q ss_pred cchhhhhhhccCCceEEe-cCCCcccccchHHHHhcC-----CCCCCCCc
Q 036250 215 QCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQ-----SSCPICRY 258 (347)
Q Consensus 215 ~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~-----~~CP~CR~ 258 (347)
.|.||...-.. .....- .|...||..|+.+=|... =.||.|..
T Consensus 28 ~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68888864211 222222 388999999998655431 24888864
No 122
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.34 E-value=12 Score=27.38 Aligned_cols=40 Identities=28% Similarity=0.585 Sum_probs=29.7
Q ss_pred ccccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccC
Q 036250 212 QDLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLP 261 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (347)
....|..|...+..++.+.. -+..||..|. .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 44679999998865554333 4778998885 6899988886
No 123
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=41.93 E-value=38 Score=26.06 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=33.7
Q ss_pred ccchhhhhhhccCCc--eE--EecCCCcccccchHHHH-hcCCCCCCCCcccCC
Q 036250 214 LQCAVCLEEFVMGNE--AK--EMPCKHKFHGECIMPWL-ELQSSCPICRYQLPS 262 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~--~~--~lpC~H~Fh~~Ci~~Wl-~~~~~CP~CR~~l~~ 262 (347)
..|.||-+.+....+ +. -.-|+--.|..|+.--. +.+..||-|+.....
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 479999999754322 22 22377778899985443 557789999887753
No 124
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=40.49 E-value=13 Score=30.54 Aligned_cols=36 Identities=28% Similarity=0.612 Sum_probs=26.0
Q ss_pred CCCCcEeeecCCceeeecCCC-----CccCCCCCCCceEecCC
Q 036250 4 ATVGSYWCYICSRMVNPRMEA-----GIKCPFCETGFVEQMSS 41 (347)
Q Consensus 4 ~~~~rywCh~C~~~V~p~~~~-----e~~CP~C~sGFiEE~~~ 41 (347)
++..--||-.|.-..-|.... .++|+.|+ |+|++++
T Consensus 20 ~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCg--Y~~~~~~ 60 (133)
T 3qt1_I 20 HMTTFRFCRDCNNMLYPREDKENNRLLFECRTCS--YVEEAGS 60 (133)
T ss_dssp --CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSC--CBCCCSC
T ss_pred cccCCeeCCCCCCEeeECccCCCceeEEECCCCC--CcEEcCC
Confidence 455678999999998877532 39999995 6777654
No 125
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=40.30 E-value=11 Score=20.21 Aligned_cols=11 Identities=45% Similarity=1.150 Sum_probs=9.2
Q ss_pred ccCCCCCCCce
Q 036250 26 IKCPFCETGFV 36 (347)
Q Consensus 26 ~~CP~C~sGFi 36 (347)
+.|+.|+..|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 68999998885
No 126
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=40.23 E-value=7.9 Score=27.39 Aligned_cols=48 Identities=25% Similarity=0.590 Sum_probs=30.3
Q ss_pred cccchhhhhhhccC-CceEEe-cCCCcccccchHHHHhc-------CCCCCCCCccc
Q 036250 213 DLQCAVCLEEFVMG-NEAKEM-PCKHKFHGECIMPWLEL-------QSSCPICRYQL 260 (347)
Q Consensus 213 ~~~C~ICl~~~~~~-~~~~~l-pC~H~Fh~~Ci~~Wl~~-------~~~CP~CR~~l 260 (347)
+..|.||....... .....- .|.-.||..|+.+-|.. .-.|+.|....
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 46799999764321 222222 38899999999875421 22588886543
No 127
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=39.49 E-value=6.2 Score=28.73 Aligned_cols=43 Identities=28% Similarity=0.508 Sum_probs=25.7
Q ss_pred cchhhhhhhccCCceEEe-cCCCcccccchHHHHhcC-----CCCCCCCc
Q 036250 215 QCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQ-----SSCPICRY 258 (347)
Q Consensus 215 ~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~-----~~CP~CR~ 258 (347)
.|.||...-.. .....- .|...||..||.+=|... =.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 56677743211 222222 288999999998655432 25888864
No 128
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.85 E-value=14 Score=26.48 Aligned_cols=40 Identities=18% Similarity=0.487 Sum_probs=29.8
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|..|...+..++. +..-+..||..|. .|-.|+..|...
T Consensus 10 ~~C~~C~~~I~~~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEK--VSSLGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CBCTTTCCBCCTTTE--EEETTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCcCCCCEeECCeE--EEECCeEeeCCCC--------CCCCCCCccCCC
Confidence 479999999865443 3345788998885 699999888654
No 129
>2b9d_A E7 protein; zinc finger, homodimer, transcription, viral protein; 1.60A {Human papillomavirus type 1A} SCOP: g.91.1.1
Probab=37.64 E-value=11 Score=26.01 Aligned_cols=23 Identities=30% Similarity=0.891 Sum_probs=17.6
Q ss_pred eecCCceeeecC----------------CCCccCCCCCC
Q 036250 11 CYICSRMVNPRM----------------EAGIKCPFCET 33 (347)
Q Consensus 11 Ch~C~~~V~p~~----------------~~e~~CP~C~s 33 (347)
|+.|.+.|+... +=+++||.|..
T Consensus 11 C~~C~~~lrl~V~at~~~IR~lqqLLl~~L~lvCp~Ca~ 49 (52)
T 2b9d_A 11 CAYCEKLVRLTVLADHSAIRQLEEMLLRSLNIVCPLCTL 49 (52)
T ss_dssp CTTTCCEEEEEEEECHHHHHHHHHHHHHTCCCCCTTTTT
T ss_pred CCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcchhc
Confidence 999999987553 12599999974
No 130
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.25 E-value=15 Score=27.24 Aligned_cols=39 Identities=21% Similarity=0.403 Sum_probs=29.0
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|..|...+. + .++..-+..||..|. .|-.|+..|...
T Consensus 26 ~~C~~C~~~I~-~--~~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 26 PMCAHCNQVIR-G--PFLVALGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp CBBSSSCCBCC-S--CEEEETTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCccCCCEec-c--eEEEECCccccccCC--------ccCCCCCCCCCC
Confidence 47999999883 2 234456888998885 689999988654
No 131
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=37.02 E-value=10 Score=27.13 Aligned_cols=39 Identities=23% Similarity=0.606 Sum_probs=21.8
Q ss_pred cchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 215 QCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 215 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
.|..|...+..++.+ ..-+..||..|. .|-.|+..|...
T Consensus 2 ~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 40 (76)
T 1iml_A 2 KCPKCDKEVYFAERV--TSLGKDWHRPCL--------KCEKCGKTLTSG 40 (76)
T ss_dssp BCTTTSSBCCGGGEE--EETTEEEETTTC--------BCTTTCCBCCTT
T ss_pred cCCCCCCEEECceEE--EECCccccCCCC--------CccccCccCCCC
Confidence 366666666433322 223666776664 477777766543
No 132
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=36.79 E-value=18 Score=28.64 Aligned_cols=34 Identities=24% Similarity=0.666 Sum_probs=25.5
Q ss_pred CCcEeeecCCceeeecCCC-----CccCCCCCCCceEecCC
Q 036250 6 VGSYWCYICSRMVNPRMEA-----GIKCPFCETGFVEQMSS 41 (347)
Q Consensus 6 ~~rywCh~C~~~V~p~~~~-----e~~CP~C~sGFiEE~~~ 41 (347)
..--||-.|.-..-|..+. -++|+.|+ +++++++
T Consensus 2 ~~m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~--y~~~~~~ 40 (113)
T 3h0g_I 2 SNFQYCIECNNMLYPREDKVDRVLRLACRNCD--YSEIAAT 40 (113)
T ss_dssp -CCCCCSSSCCCCEECCCTTTCCCCEECSSSC--CEECCSC
T ss_pred CcceeCcCCCCEeeEcccCCCCeeEEECCCCC--CeEEcCC
Confidence 3456999999999877643 38999995 7777764
No 133
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=35.54 E-value=12 Score=28.52 Aligned_cols=28 Identities=18% Similarity=0.651 Sum_probs=21.7
Q ss_pred cEeeecCCceeeecCCCCccCCCCCCCceEe
Q 036250 8 SYWCYICSRMVNPRMEAGIKCPFCETGFVEQ 38 (347)
Q Consensus 8 rywCh~C~~~V~p~~~~e~~CP~C~sGFiEE 38 (347)
...|+.|.+.|....+ +.| +|+.-|--.
T Consensus 25 ~~rC~~C~kkvgl~~~--f~C-rCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLATS--FEC-RCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSSC--EEC-TTCCEECTT
T ss_pred CccchhhCCeecccCC--eEc-CCCCEeccc
Confidence 4679999999974334 999 699988743
No 134
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=35.20 E-value=13 Score=26.85 Aligned_cols=28 Identities=32% Similarity=0.805 Sum_probs=21.7
Q ss_pred CcEeeecCCceeeecCCCCccCCCCCCCceEe
Q 036250 7 GSYWCYICSRMVNPRMEAGIKCPFCETGFVEQ 38 (347)
Q Consensus 7 ~rywCh~C~~~V~p~~~~e~~CP~C~sGFiEE 38 (347)
..-.|..|.+.|.. + -+.| +|+.-|--.
T Consensus 14 ~~~rC~~C~kkvgl-~--~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGV-M--GFKC-KCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTT-S--CEEC-TTSCEECSS
T ss_pred cCCcChhhCCcccc-c--CeEe-ecCCEeccc
Confidence 34689999999872 2 4899 999999754
No 135
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.79 E-value=20 Score=26.49 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=29.3
Q ss_pred cccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 213 DLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
...|..|...+.. ..+..-+..||..|. .|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~~---~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG---AVVKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS---CCEESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CCCcccCCCEecc---cEEEECCceECccCC--------EecCCCCCCCCC
Confidence 3579999998852 234446788998885 689999888654
No 136
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=34.74 E-value=13 Score=19.98 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=9.5
Q ss_pred ccCCCCCCCceE
Q 036250 26 IKCPFCETGFVE 37 (347)
Q Consensus 26 ~~CP~C~sGFiE 37 (347)
+.|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 689999888853
No 137
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.52 E-value=14 Score=25.04 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=10.1
Q ss_pred CccCCCCCCCce
Q 036250 25 GIKCPFCETGFV 36 (347)
Q Consensus 25 e~~CP~C~sGFi 36 (347)
-+.||+|+-+|-
T Consensus 12 ~~~CPrCn~~f~ 23 (49)
T 2e72_A 12 RKICPRCNAQFR 23 (49)
T ss_dssp CCCCTTTCCCCS
T ss_pred ceeCCccccccc
Confidence 488999999884
No 138
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=33.66 E-value=16 Score=21.22 Aligned_cols=13 Identities=31% Similarity=0.930 Sum_probs=10.7
Q ss_pred CccCCCCCCCceE
Q 036250 25 GIKCPFCETGFVE 37 (347)
Q Consensus 25 e~~CP~C~sGFiE 37 (347)
.+.|+.|+..|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4899999998853
No 139
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=33.44 E-value=24 Score=24.35 Aligned_cols=39 Identities=18% Similarity=0.395 Sum_probs=28.6
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|+.|...+. +. .+..-+..||..|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLGH 44 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCCC
Confidence 46999999885 22 34456788998875 699999888643
No 140
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.89 E-value=24 Score=24.53 Aligned_cols=39 Identities=26% Similarity=0.579 Sum_probs=27.8
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|..|...+.. + .+..-+..||..|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8z_A 6 SGCVQCKKPITT-G--GVTYREQPWHKECF--------VCTACRKQLSGQ 44 (70)
T ss_dssp CBCSSSCCBCCS-S--EEESSSSEEETTTS--------BCSSSCCBCTTS
T ss_pred CCCcccCCeecc-c--eEEECccccCCCCC--------ccCCCCCcCCcC
Confidence 368889888842 2 24446788998875 688999888543
No 141
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=32.86 E-value=15 Score=19.50 Aligned_cols=11 Identities=55% Similarity=1.213 Sum_probs=8.5
Q ss_pred ccCCCCCCCce
Q 036250 26 IKCPFCETGFV 36 (347)
Q Consensus 26 ~~CP~C~sGFi 36 (347)
++|+.|+..|.
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 67888887774
No 142
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=32.75 E-value=18 Score=26.87 Aligned_cols=28 Identities=29% Similarity=0.692 Sum_probs=21.9
Q ss_pred CcEeeecCCceeeecCCCCccCCCCCCCceEe
Q 036250 7 GSYWCYICSRMVNPRMEAGIKCPFCETGFVEQ 38 (347)
Q Consensus 7 ~rywCh~C~~~V~p~~~~e~~CP~C~sGFiEE 38 (347)
....|+.|.+.|... -+.| +|+.-|--.
T Consensus 24 ~~~RC~~C~kkvgL~---~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT---GFKC-RCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTT---CEEC-TTSCEECTT
T ss_pred cCccchhhcCccccc---ceEe-ccCCEeccc
Confidence 457899999999733 4899 999998643
No 143
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=32.69 E-value=4.6 Score=30.66 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=20.9
Q ss_pred CCcEeeecCCcee--eecCCCCccCCCCCCCce
Q 036250 6 VGSYWCYICSRMV--NPRMEAGIKCPFCETGFV 36 (347)
Q Consensus 6 ~~rywCh~C~~~V--~p~~~~e~~CP~C~sGFi 36 (347)
...|.|-.|-... ++..+ -.+|+.|+.-|.
T Consensus 25 ~~~y~Cp~CG~~~v~r~atG-iW~C~~Cg~~~a 56 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTG-IWQCSYCDYKFT 56 (83)
T ss_dssp HSCEECSSSCCEEEEEEETT-EEEETTTCCEEE
T ss_pred cccCcCCCCCCcceeccCCC-eEECCCCCCEec
Confidence 4678999998854 33333 588999987553
No 144
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=32.59 E-value=27 Score=27.46 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=20.9
Q ss_pred ccccchhhhhhhc-----cCCc-eEEecCCCcccccchH
Q 036250 212 QDLQCAVCLEEFV-----MGNE-AKEMPCKHKFHGECIM 244 (347)
Q Consensus 212 ~~~~C~ICl~~~~-----~~~~-~~~lpC~H~Fh~~Ci~ 244 (347)
....|.+|+..-. .+++ +.-..|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3457999987531 1112 2223499999999995
No 145
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=31.46 E-value=22 Score=26.98 Aligned_cols=35 Identities=20% Similarity=0.435 Sum_probs=24.5
Q ss_pred cccchhhhhhhccCCceEE-ecCCCcccccchHHHH
Q 036250 213 DLQCAVCLEEFVMGNEAKE-MPCKHKFHGECIMPWL 247 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl 247 (347)
...|.+|...|..-..-.. -.||++||..|...++
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 4579999999954322222 2499999999986654
No 146
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=31.20 E-value=8.7 Score=34.58 Aligned_cols=43 Identities=28% Similarity=0.535 Sum_probs=23.9
Q ss_pred cchhhhhhhccCCceEEe-cCCCcccccchHHHHhcC--C---CCCCCCc
Q 036250 215 QCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQ--S---SCPICRY 258 (347)
Q Consensus 215 ~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~--~---~CP~CR~ 258 (347)
.|.||...-.. .....- .|...||..|+.+=|... . .||.|+.
T Consensus 176 ~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57888753211 222222 388999999998765432 2 4999964
No 147
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=31.08 E-value=18 Score=19.43 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=9.5
Q ss_pred ccCCCCCCCceE
Q 036250 26 IKCPFCETGFVE 37 (347)
Q Consensus 26 ~~CP~C~sGFiE 37 (347)
+.|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 679999888853
No 148
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=30.99 E-value=18 Score=28.31 Aligned_cols=47 Identities=26% Similarity=0.466 Sum_probs=31.1
Q ss_pred ccchhhhhhhccCCceEEe--cCCCcccccchHHH------H----hcCCCCCCCCccc
Q 036250 214 LQCAVCLEEFVMGNEAKEM--PCKHKFHGECIMPW------L----ELQSSCPICRYQL 260 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~l--pC~H~Fh~~Ci~~W------l----~~~~~CP~CR~~l 260 (347)
..|.||...+..+...+.- .|.-.||..|+.-- | ...-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 4699999997544444333 37889999998311 1 0244699997753
No 149
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=30.86 E-value=30 Score=30.39 Aligned_cols=35 Identities=26% Similarity=0.556 Sum_probs=24.0
Q ss_pred ccccchhhhhhhccCCceEEe-cCCCcccccchHHH
Q 036250 212 QDLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPW 246 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~W 246 (347)
+...|.+|...|..-..-..- .||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 356899999999532222222 39999999997543
No 150
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=36.94 E-value=10 Score=20.13 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=10.4
Q ss_pred ccCCCCCCCceEe
Q 036250 26 IKCPFCETGFVEQ 38 (347)
Q Consensus 26 ~~CP~C~sGFiEE 38 (347)
+.|+.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 6799999888753
No 151
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=30.32 E-value=17 Score=19.71 Aligned_cols=11 Identities=27% Similarity=0.923 Sum_probs=9.0
Q ss_pred ccCCCCCCCce
Q 036250 26 IKCPFCETGFV 36 (347)
Q Consensus 26 ~~CP~C~sGFi 36 (347)
+.|+.|+..|.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 67999988884
No 152
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.32 E-value=22 Score=25.98 Aligned_cols=42 Identities=26% Similarity=0.479 Sum_probs=30.3
Q ss_pred cccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCCC
Q 036250 213 DLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSDD 264 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~ 264 (347)
...|..|...+...+.+ +.-+..||..|. .|-.|+..|....
T Consensus 15 ~~~C~~C~~~I~~~e~v--~a~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 15 GDLCALCGEHLYVLERL--CVNGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp SCBCSSSCCBCCTTTBC--CBTTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCcccCCCcccceEE--EECCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 45799999988544433 235778999885 6889988886554
No 153
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=30.06 E-value=28 Score=27.47 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=29.0
Q ss_pred cccccchhhhhhhccCCceEEe---cCCCcccccchHHHHhcCC----CCCCCCcccCCC
Q 036250 211 DQDLQCAVCLEEFVMGNEAKEM---PCKHKFHGECIMPWLELQS----SCPICRYQLPSD 263 (347)
Q Consensus 211 ~~~~~C~ICl~~~~~~~~~~~l---pC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~l~~~ 263 (347)
..+..|.||.+. .+.+.- .|-..||..|+. |.... .||.|+..+...
T Consensus 13 ~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 345679999842 333333 277899999996 43322 388776555443
No 154
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.98 E-value=31 Score=24.14 Aligned_cols=41 Identities=22% Similarity=0.504 Sum_probs=29.0
Q ss_pred ccchhhhhhhcc--CCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVM--GNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~--~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|..|...+.. +.. ++..-+..||..|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~~~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTK-YISFEERQWHNDCF--------NCKKCSLSLVGR 48 (72)
T ss_dssp CSBTTTTBCCCCSSSCS-CEECSSCEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCcCCCccccCCCCcc-eEEECCcccCcccC--------EeccCCCcCCCC
Confidence 469999998853 222 23346788998885 689999888643
No 155
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.93 E-value=20 Score=25.79 Aligned_cols=29 Identities=28% Similarity=0.620 Sum_probs=22.3
Q ss_pred CCcEeeecCCceeeecCCCCccCCCCCCCceEe
Q 036250 6 VGSYWCYICSRMVNPRMEAGIKCPFCETGFVEQ 38 (347)
Q Consensus 6 ~~rywCh~C~~~V~p~~~~e~~CP~C~sGFiEE 38 (347)
.....|..|.+.|. .+ -+.| +|+.-|--.
T Consensus 13 ~~~~rC~~C~kkvg-l~--~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 13 QRPNRCTVCRKRVG-LT--GFMC-RCGTTFCGS 41 (64)
T ss_dssp SSCCCCTTTCCCCC-TT--CEEC-SSSCEECTT
T ss_pred CcCCcChhhCCccC-cc--CEEe-ecCCEeccc
Confidence 34578999999987 22 4899 899998643
No 156
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=29.90 E-value=5.7 Score=31.22 Aligned_cols=43 Identities=21% Similarity=0.482 Sum_probs=26.2
Q ss_pred cchhhhhhhccCCceEEe-cCCCcccccchHHHHhcC----CCCCCCCc
Q 036250 215 QCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLELQ----SSCPICRY 258 (347)
Q Consensus 215 ~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~----~~CP~CR~ 258 (347)
.|.||...-.. .....- .|...||..|+.+=|... -.||.|+.
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 57778765421 122222 388999999998755432 24887754
No 157
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=29.87 E-value=23 Score=28.59 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=23.3
Q ss_pred cccchhhhhhhccCCceEEe-cCCCcccccchHHH
Q 036250 213 DLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPW 246 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~W 246 (347)
...|.+|...|..-..-..- .||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 35799999999532222222 39999999997543
No 158
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.69 E-value=16 Score=26.41 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=28.6
Q ss_pred cccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCC
Q 036250 213 DLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPS 262 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (347)
...|..|...+.. . ++..-+..||..|. .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCCCC
Confidence 3579999998853 2 34446788998885 68899888753
No 159
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=29.53 E-value=7.2 Score=33.02 Aligned_cols=47 Identities=21% Similarity=0.449 Sum_probs=29.3
Q ss_pred ccccchhhhhhhccCCceEEe-cCCCcccccchHHHH-----hcCCCCCCCCcc
Q 036250 212 QDLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWL-----ELQSSCPICRYQ 259 (347)
Q Consensus 212 ~~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl-----~~~~~CP~CR~~ 259 (347)
+...| ||......+...+.- .|...||..|+.--. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34578 999876432322222 388899999994221 124469999764
No 160
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.50 E-value=13 Score=19.95 Aligned_cols=11 Identities=18% Similarity=0.613 Sum_probs=9.0
Q ss_pred ccCCCCCCCce
Q 036250 26 IKCPFCETGFV 36 (347)
Q Consensus 26 ~~CP~C~sGFi 36 (347)
+.|+.|+..|.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 77999988875
No 161
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=29.19 E-value=25 Score=29.21 Aligned_cols=42 Identities=33% Similarity=0.541 Sum_probs=29.2
Q ss_pred cccchhhhhhhccCCceEEe-cCCCcccccchHHHHh---------c--CCCCCCCCc
Q 036250 213 DLQCAVCLEEFVMGNEAKEM-PCKHKFHGECIMPWLE---------L--QSSCPICRY 258 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~---------~--~~~CP~CR~ 258 (347)
+..|.||.+- .++..- .|-..||..||.+=|. . .-.||+|+.
T Consensus 63 ~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4689999865 333333 3889999999997663 1 125999964
No 162
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=28.87 E-value=3.8 Score=32.64 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=27.9
Q ss_pred cchhhhhhhccCCceEEecCCCcccccchHHHHhcCC----CCCCCCccc
Q 036250 215 QCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQS----SCPICRYQL 260 (347)
Q Consensus 215 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~l 260 (347)
.|.||...-..+.-+.--.|...||..|+.+=|.... .||.|+..+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 6888877542222122223889999999987554322 388886543
No 163
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.68 E-value=26 Score=24.49 Aligned_cols=41 Identities=27% Similarity=0.498 Sum_probs=28.8
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|..|...+..++ .++..-+..||..|. .|-.|...|...
T Consensus 6 ~~C~~C~~~I~~~~-~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGS-RKLEYGGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSS-CEECSTTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCccCCCccccCc-cEEEECccccCcccC--------eECCCCCcCCCC
Confidence 46889998885432 234446788998875 688998888654
No 164
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.65 E-value=11 Score=26.50 Aligned_cols=36 Identities=25% Similarity=0.567 Sum_probs=23.9
Q ss_pred ccchhhhhhhccCCceEEec-----CCCcccccchHHHHhc
Q 036250 214 LQCAVCLEEFVMGNEAKEMP-----CKHKFHGECIMPWLEL 249 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lp-----C~H~Fh~~Ci~~Wl~~ 249 (347)
..|+-|.-.++...--..|. |++.||..|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 36888877775443222222 7788999999888644
No 165
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=28.58 E-value=26 Score=24.77 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=19.5
Q ss_pred CCCCcEeeecCCcee-eecCCCCccCCCCCCCc
Q 036250 4 ATVGSYWCYICSRMV-NPRMEAGIKCPFCETGF 35 (347)
Q Consensus 4 ~~~~rywCh~C~~~V-~p~~~~e~~CP~C~sGF 35 (347)
.|..+-.|..|.... .+ .-|+||+|.--|
T Consensus 7 ~m~~~~~C~vC~~~~~~~---akY~CPrC~~rY 36 (59)
T 1x4s_A 7 GMEPAGPCGFCPAGEVQP---ARYTCPRCNAPY 36 (59)
T ss_dssp SCCCCEEECSSCTTCCEE---ECEECTTTCCEE
T ss_pred CCCCCCcCcCCCCCcCCC---ccccCcCCCCCc
Confidence 345667899998632 21 259999997543
No 166
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.73 E-value=53 Score=24.20 Aligned_cols=41 Identities=20% Similarity=0.491 Sum_probs=30.3
Q ss_pred cccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 213 DLQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
...|..|...+...+ .+..-+..||..|. .|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~--~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPME--RLLANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTS--EEECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCce--eEEECCCEECCCCC--------eeCCCCCCCCCC
Confidence 457999999986443 23456788998885 588898888654
No 167
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=27.58 E-value=16 Score=28.61 Aligned_cols=11 Identities=36% Similarity=1.054 Sum_probs=10.0
Q ss_pred ccccchHHHHh
Q 036250 238 FHGECIMPWLE 248 (347)
Q Consensus 238 Fh~~Ci~~Wl~ 248 (347)
||..||.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 168
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=27.49 E-value=19 Score=26.17 Aligned_cols=29 Identities=17% Similarity=0.442 Sum_probs=22.4
Q ss_pred cccchhhhhhhccCCceEEecC-CCcccccchHH
Q 036250 213 DLQCAVCLEEFVMGNEAKEMPC-KHKFHGECIMP 245 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~lpC-~H~Fh~~Ci~~ 245 (347)
..-|.||.++- .++-+.| +-+||..|...
T Consensus 8 ~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 8 LPWCCICNEDA----TLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CSSCTTTCSCC----CEEETTTTSEEECSSHHHH
T ss_pred CCeeEEeCCCC----eEEecCCCCceehHHHHHH
Confidence 34699999984 5778889 78898888544
No 169
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=27.45 E-value=15 Score=19.84 Aligned_cols=11 Identities=36% Similarity=1.044 Sum_probs=8.7
Q ss_pred ccCCCCCCCce
Q 036250 26 IKCPFCETGFV 36 (347)
Q Consensus 26 ~~CP~C~sGFi 36 (347)
+.|+.|+..|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 67888888774
No 170
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=27.43 E-value=16 Score=28.64 Aligned_cols=12 Identities=25% Similarity=0.864 Sum_probs=10.5
Q ss_pred cccccchHHHHh
Q 036250 237 KFHGECIMPWLE 248 (347)
Q Consensus 237 ~Fh~~Ci~~Wl~ 248 (347)
-||..||.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 171
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.11 E-value=22 Score=24.87 Aligned_cols=39 Identities=26% Similarity=0.572 Sum_probs=27.7
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|..|...+. +. .+..-+..||..|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFII-GR--VIKAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCC-SC--CEEETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CcCccCCCEec-ce--EEEECcccccccCC--------EeCCCCCcCCCC
Confidence 46888988875 22 23345778898885 688998888654
No 172
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=26.97 E-value=25 Score=26.03 Aligned_cols=34 Identities=24% Similarity=0.525 Sum_probs=23.4
Q ss_pred cccchhhhhhhccCCceEE-ecCCCcccccchHHH
Q 036250 213 DLQCAVCLEEFVMGNEAKE-MPCKHKFHGECIMPW 246 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~-lpC~H~Fh~~Ci~~W 246 (347)
...|.+|...|..-..-.. -.||.+||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3579999999953222222 239999999997553
No 173
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=26.94 E-value=21 Score=20.26 Aligned_cols=13 Identities=31% Similarity=0.940 Sum_probs=10.3
Q ss_pred ccCCCCCCCceEe
Q 036250 26 IKCPFCETGFVEQ 38 (347)
Q Consensus 26 ~~CP~C~sGFiEE 38 (347)
+.|+.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (32)
T 2kfq_A 3 FACPACPKRFMRS 15 (32)
T ss_dssp SSSSSSCTTHHHH
T ss_pred CCCCCCCcccCCH
Confidence 6899999888643
No 174
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=26.80 E-value=24 Score=23.49 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=21.8
Q ss_pred CcEeeecCCc-eeeec-CCCCccCCCCCCCceEecC
Q 036250 7 GSYWCYICSR-MVNPR-MEAGIKCPFCETGFVEQMS 40 (347)
Q Consensus 7 ~rywCh~C~~-~V~p~-~~~e~~CP~C~sGFiEE~~ 40 (347)
..+-|-.|.. .+.-- ...+++|+.|+--|-|++-
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~i 39 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEENII 39 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCccccccc
Confidence 3567999976 44321 2237999999876655543
No 175
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=26.68 E-value=24 Score=20.20 Aligned_cols=11 Identities=36% Similarity=1.044 Sum_probs=9.2
Q ss_pred ccCCCCCCCce
Q 036250 26 IKCPFCETGFV 36 (347)
Q Consensus 26 ~~CP~C~sGFi 36 (347)
+.|+.|+..|.
T Consensus 3 ~~C~~C~k~F~ 13 (33)
T 1rim_A 3 FACPECPKRFM 13 (33)
T ss_dssp CCCSSSCCCCS
T ss_pred ccCCCCCchhC
Confidence 67999998885
No 176
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=26.67 E-value=22 Score=25.36 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=22.3
Q ss_pred cccchhhhhhhccCCceEEe--cCCCcccccch
Q 036250 213 DLQCAVCLEEFVMGNEAKEM--PCKHKFHGECI 243 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~l--pC~H~Fh~~Ci 243 (347)
...|.+|...+..+...+.- .|.-.||..|+
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 34799999988554433333 48888999998
No 177
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.64 E-value=16 Score=20.82 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=10.5
Q ss_pred CccCCCCCCCceE
Q 036250 25 GIKCPFCETGFVE 37 (347)
Q Consensus 25 e~~CP~C~sGFiE 37 (347)
.+.|+.|+..|..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 2elx_A 7 GYVCALCLKKFVS 19 (35)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCcchhCC
Confidence 3889999988864
No 178
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.76 E-value=32 Score=24.44 Aligned_cols=41 Identities=20% Similarity=0.412 Sum_probs=28.3
Q ss_pred ccchhhhhhhcc-CCceEEecCCCcccccchHHHHhcCCCCCCCCcccCC
Q 036250 214 LQCAVCLEEFVM-GNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPS 262 (347)
Q Consensus 214 ~~C~ICl~~~~~-~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (347)
..|+.|...+.. +...++..-+..||..|. .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCCC
Confidence 369999988853 111234446788999885 68899888864
No 179
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.68 E-value=17 Score=19.48 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=9.3
Q ss_pred ccCCCCCCCceE
Q 036250 26 IKCPFCETGFVE 37 (347)
Q Consensus 26 ~~CP~C~sGFiE 37 (347)
+.|+.|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 779999888753
No 180
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.65 E-value=17 Score=19.43 Aligned_cols=11 Identities=36% Similarity=0.893 Sum_probs=8.4
Q ss_pred ccCCCCCCCce
Q 036250 26 IKCPFCETGFV 36 (347)
Q Consensus 26 ~~CP~C~sGFi 36 (347)
+.|+.|+..|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 67888887774
No 181
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.61 E-value=17 Score=19.49 Aligned_cols=11 Identities=27% Similarity=1.017 Sum_probs=8.9
Q ss_pred ccCCCCCCCce
Q 036250 26 IKCPFCETGFV 36 (347)
Q Consensus 26 ~~CP~C~sGFi 36 (347)
+.|+.|+..|.
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 67888988875
No 182
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=25.47 E-value=26 Score=26.72 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=13.6
Q ss_pred CCCccCCCCCCCceEe
Q 036250 23 EAGIKCPFCETGFVEQ 38 (347)
Q Consensus 23 ~~e~~CP~C~sGFiEE 38 (347)
+.+.+||+|+--|+.+
T Consensus 46 ~g~~~CpYCg~~y~~~ 61 (87)
T 2jz8_A 46 TDEKICPYCSTLYRYD 61 (87)
T ss_dssp CCEECCTTTCCEEECC
T ss_pred CCeEECCCCCCEeEcC
Confidence 4578999999999876
No 183
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.42 E-value=29 Score=25.00 Aligned_cols=39 Identities=23% Similarity=0.670 Sum_probs=27.7
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|+.|...+. +. ++..-+..||..|. .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~-~~--~v~a~~~~wH~~CF--------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GE--VVSALGKTYHPDCF--------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SC--CEEETTEEECTTTS--------SCSSSCCCCCSS
T ss_pred CcCccccCEec-cc--eEEECCceeCccCC--------ccccCCCCCCCC
Confidence 37999999885 22 23345788998775 688998888643
No 184
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=25.35 E-value=31 Score=24.98 Aligned_cols=41 Identities=27% Similarity=0.592 Sum_probs=25.5
Q ss_pred cccchhhhhhhccCCceEEec-----CC-CcccccchHHHHhc----CCCCCCCCccc
Q 036250 213 DLQCAVCLEEFVMGNEAKEMP-----CK-HKFHGECIMPWLEL----QSSCPICRYQL 260 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~lp-----C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~~l 260 (347)
...| ||..... +. .+- |. ..||..|+. |.. .-.||.|+...
T Consensus 16 ~~~C-~C~~~~~-g~---MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-SS---EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-CC---EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 4567 8987642 22 333 44 589999996 332 23599997643
No 185
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=25.28 E-value=21 Score=25.76 Aligned_cols=40 Identities=28% Similarity=0.526 Sum_probs=29.5
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|..|...+..++. +..-+..||..|. .|-.|+..|...
T Consensus 8 ~~C~~C~~~I~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEE--VQCDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTE--EEETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CcCcCcCccccCcee--EEeCCcccccccC--------ccCCCCCCCCCC
Confidence 479999998865442 3446788998886 588998888654
No 186
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.24 E-value=24 Score=20.22 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=10.5
Q ss_pred CccCCCCCCCceE
Q 036250 25 GIKCPFCETGFVE 37 (347)
Q Consensus 25 e~~CP~C~sGFiE 37 (347)
.+.|+.|+..|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 4899999988853
No 187
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.11 E-value=15 Score=19.92 Aligned_cols=13 Identities=23% Similarity=0.807 Sum_probs=10.0
Q ss_pred ccCCCCCCCceEe
Q 036250 26 IKCPFCETGFVEQ 38 (347)
Q Consensus 26 ~~CP~C~sGFiEE 38 (347)
+.|+.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 6799998888643
No 188
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=24.82 E-value=6.7 Score=31.84 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=29.7
Q ss_pred ccchhhhhhhccCCc-eEEecCCCcccccchHHHHhcCCCCCCCCccc
Q 036250 214 LQCAVCLEEFVMGNE-AKEMPCKHKFHGECIMPWLELQSSCPICRYQL 260 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~-~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l 260 (347)
..|.+|...|..-.. -.--.||.+||..|..........|-.|...+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 479999999943211 12234999999999877665566677775443
No 189
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.52 E-value=20 Score=29.53 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=23.1
Q ss_pred ccccchhhhhhhc-c-CCceEEecCCCcccccchH
Q 036250 212 QDLQCAVCLEEFV-M-GNEAKEMPCKHKFHGECIM 244 (347)
Q Consensus 212 ~~~~C~ICl~~~~-~-~~~~~~lpC~H~Fh~~Ci~ 244 (347)
....|.+|...|. . +....-..|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4568999999992 2 2333444589999988864
No 190
>2ewl_A Protein E7; HPV, oncoprotein, zinc binding, virus-viral protein COMP; NMR {Human papillomavirus} SCOP: g.91.1.1 PDB: 2f8b_A
Probab=24.48 E-value=17 Score=25.41 Aligned_cols=26 Identities=23% Similarity=0.650 Sum_probs=18.5
Q ss_pred CcEe----eecCCceeeecCC----------------CCccCCCCC
Q 036250 7 GSYW----CYICSRMVNPRME----------------AGIKCPFCE 32 (347)
Q Consensus 7 ~ryw----Ch~C~~~V~p~~~----------------~e~~CP~C~ 32 (347)
..|+ |+.|.+.|+.... =.++||.|.
T Consensus 8 ~~Y~I~t~C~~C~~~lRl~V~at~~~IR~lqqLLl~~L~lvCp~Ca 53 (56)
T 2ewl_A 8 QRHKILCVCCKCDGRIELTVESSAEDLRTLQQLFLSTLSFVCPWCA 53 (56)
T ss_dssp SEEEEEEEBTTTCCEEEEEEECCHHHHHHHHHHHHHTCCBCCHHHH
T ss_pred cCEEEEEECCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcccc
Confidence 3565 9999999876531 258899884
No 191
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=24.42 E-value=32 Score=24.85 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=22.1
Q ss_pred ccchhhhhhhccCCceEE-ecCCCcccccchHH
Q 036250 214 LQCAVCLEEFVMGNEAKE-MPCKHKFHGECIMP 245 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~-lpC~H~Fh~~Ci~~ 245 (347)
..|.+|...|..-..-.. -.||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 579999999953221122 23999999999754
No 192
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=24.36 E-value=21 Score=29.36 Aligned_cols=12 Identities=25% Similarity=0.919 Sum_probs=5.8
Q ss_pred cCCCCCCCceEe
Q 036250 27 KCPFCETGFVEQ 38 (347)
Q Consensus 27 ~CP~C~sGFiEE 38 (347)
.||.|++-|.=|
T Consensus 29 ~CP~C~seytYe 40 (138)
T 2akl_A 29 PCPQCNSEYTYE 40 (138)
T ss_dssp CCTTTCCCCCEE
T ss_pred CCCCCCCcceEe
Confidence 455555544444
No 193
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=24.05 E-value=34 Score=30.07 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=19.1
Q ss_pred CCcEeeecCCceeeecCCCCccCCCCCC
Q 036250 6 VGSYWCYICSRMVNPRMEAGIKCPFCET 33 (347)
Q Consensus 6 ~~rywCh~C~~~V~p~~~~e~~CP~C~s 33 (347)
+..--|..|...+.+.....+.||.|..
T Consensus 8 ~~~~~Cw~C~~~~~~~~~~~~fC~~c~~ 35 (207)
T 3bvo_A 8 SNYPRCWNCGGPWGPGREDRFFCPQCRA 35 (207)
T ss_dssp ---CBCSSSCCBCCSSCSCCCBCTTTCC
T ss_pred CCCCCCCCCCCCcccccccccccccccc
Confidence 4455699999885444455799999974
No 194
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.03 E-value=37 Score=26.00 Aligned_cols=40 Identities=28% Similarity=0.624 Sum_probs=25.1
Q ss_pred cccchhhhhhhccCCceEEec-----CC-CcccccchHHHHhc----CCCCCCCCcc
Q 036250 213 DLQCAVCLEEFVMGNEAKEMP-----CK-HKFHGECIMPWLEL----QSSCPICRYQ 259 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~lp-----C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~~ 259 (347)
...| ||..... +. .+- |. ..||..|+. |.. +-.||.|+..
T Consensus 36 ~~yC-iC~~~~~-g~---MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 36 PTYC-LCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CBCS-TTCCBCC-SC---CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CcEE-ECCCCCC-CC---EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 3467 9988652 22 232 44 579999996 322 2359999764
No 195
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.90 E-value=30 Score=24.99 Aligned_cols=39 Identities=18% Similarity=0.407 Sum_probs=28.6
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|..|...+. +. .+..-+..||..|. .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~-~~--~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 16 YICQKCHAIID-EQ--PLIFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CBCTTTCCBCC-SC--CCCCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCccCCCEec-ce--EEEECcceeCCCCC--------EeCCCCCccCCC
Confidence 47999999885 22 23346788998774 799999988754
No 196
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=23.82 E-value=19 Score=20.55 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=10.2
Q ss_pred CccCCCCCCCceE
Q 036250 25 GIKCPFCETGFVE 37 (347)
Q Consensus 25 e~~CP~C~sGFiE 37 (347)
-++|+.|+..|..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 1srk_A 7 PFVCRICLSAFTT 19 (35)
T ss_dssp CEECSSSCCEESS
T ss_pred CeeCCCCCcccCC
Confidence 3789999988853
No 197
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.76 E-value=38 Score=24.32 Aligned_cols=41 Identities=20% Similarity=0.576 Sum_probs=29.4
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|..|...+..++.+ +..-+..||..|. .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceE-EEECccccccccC--------chhhCCCccCCC
Confidence 4799999988644433 3345778998875 688998888654
No 198
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=23.75 E-value=33 Score=25.94 Aligned_cols=48 Identities=21% Similarity=0.388 Sum_probs=30.1
Q ss_pred ccchhhhhhhccCCceEE-ecCCCcccccchHHHHh-------cCCCCCCCCcccC
Q 036250 214 LQCAVCLEEFVMGNEAKE-MPCKHKFHGECIMPWLE-------LQSSCPICRYQLP 261 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl~-------~~~~CP~CR~~l~ 261 (347)
..|.+|...|..-..-.. -.|+++||..|....+. ....|-.|...|.
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 479999999953222122 23999999999865431 1224777765553
No 199
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.74 E-value=12 Score=20.35 Aligned_cols=11 Identities=36% Similarity=1.198 Sum_probs=8.6
Q ss_pred ccCCCCCCCce
Q 036250 26 IKCPFCETGFV 36 (347)
Q Consensus 26 ~~CP~C~sGFi 36 (347)
+.|+.|+..|.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 67888887775
No 200
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.22 E-value=19 Score=20.74 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=10.4
Q ss_pred CccCCCCCCCceE
Q 036250 25 GIKCPFCETGFVE 37 (347)
Q Consensus 25 e~~CP~C~sGFiE 37 (347)
-++|+.|+..|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elq_A 9 PFKCSLCEYATRS 21 (36)
T ss_dssp SEECSSSSCEESC
T ss_pred CccCCCCCchhCC
Confidence 3889999988864
No 201
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.01 E-value=41 Score=24.01 Aligned_cols=39 Identities=23% Similarity=0.550 Sum_probs=28.0
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|..|...+.. . .+..-+..||..|. .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~-~--~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 2cuq_A 16 PRCARCSKTLTQ-G--GVTYRDQPWHRECL--------VCTGCQTPLAGQ 54 (80)
T ss_dssp CCCTTTCCCCCS-C--CEESSSSEECTTTC--------BCSSSCCBCTTC
T ss_pred CcCCCCCCEecC-c--EEEECCchhhhhhC--------CcccCCCcCCCC
Confidence 469999988843 2 34446788998875 688999888543
No 202
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.99 E-value=20 Score=20.57 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=9.8
Q ss_pred CccCCCCCCCce
Q 036250 25 GIKCPFCETGFV 36 (347)
Q Consensus 25 e~~CP~C~sGFi 36 (347)
-++|+.|+..|.
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elt_A 9 PYKCPQCSYASA 20 (36)
T ss_dssp SEECSSSSCEES
T ss_pred CCCCCCCCcccC
Confidence 388999998885
No 203
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.98 E-value=28 Score=24.17 Aligned_cols=39 Identities=18% Similarity=0.494 Sum_probs=26.9
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|..|...+.. +. +..-+..||..|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (69)
T 2cur_A 6 SGCVKCNKAITS-GG--ITYQDQPWHADCF--------VCVTCSKKLAGQ 44 (69)
T ss_dssp CCCSSSCCCCCT-TC--EEETTEEECTTTT--------BCTTTCCBCTTS
T ss_pred CCCcccCCEeCc-ce--EEECccccccCcC--------EECCCCCCCCCC
Confidence 368888888742 32 3335778888775 688998888643
No 204
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.84 E-value=35 Score=23.77 Aligned_cols=41 Identities=20% Similarity=0.475 Sum_probs=28.4
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|..|...+...+. ++..-+..||..|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTR-KMEYKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSC-EEEETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCce-EEEECcCeecccCC--------cccccCCccCCC
Confidence 369999988854332 23335778998775 688998887654
No 205
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.72 E-value=30 Score=25.74 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=22.0
Q ss_pred cccchhhhhhhccCCceEE-ecCCCcccccchHH
Q 036250 213 DLQCAVCLEEFVMGNEAKE-MPCKHKFHGECIMP 245 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~-lpC~H~Fh~~Ci~~ 245 (347)
...|.+|...|..-..-.. -.||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3579999999943221112 23999999999643
No 206
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=28.37 E-value=18 Score=19.55 Aligned_cols=13 Identities=23% Similarity=0.718 Sum_probs=10.2
Q ss_pred ccCCCCCCCceEe
Q 036250 26 IKCPFCETGFVEQ 38 (347)
Q Consensus 26 ~~CP~C~sGFiEE 38 (347)
+.|+.|+..|...
T Consensus 4 ~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 4 YVCIHCQRQFADP 16 (30)
Confidence 7899999888653
No 207
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.43 E-value=23 Score=20.82 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=10.2
Q ss_pred ccCCCCCCCceE
Q 036250 26 IKCPFCETGFVE 37 (347)
Q Consensus 26 ~~CP~C~sGFiE 37 (347)
++|+.|+..|..
T Consensus 10 ~~C~~C~k~f~~ 21 (37)
T 2elm_A 10 YYCSQCHYSSIT 21 (37)
T ss_dssp EECSSSSCEEEC
T ss_pred eECCCCCcccCC
Confidence 889999998864
No 208
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.32 E-value=30 Score=24.87 Aligned_cols=38 Identities=24% Similarity=0.527 Sum_probs=27.1
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPS 262 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (347)
..|..|...+. +. .+..-+..||..|. .|-.|...|..
T Consensus 16 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GP--FMVAGEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SC--CBCCTTCCBCTTSC--------BCTTTCCBCCT
T ss_pred CcCccCCCCcC-ce--EEEECCceeccccC--------CccCCCCccCC
Confidence 36999998885 22 23345788898775 68899988854
No 209
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.31 E-value=9.6 Score=27.86 Aligned_cols=44 Identities=27% Similarity=0.528 Sum_probs=27.5
Q ss_pred ccchhhhhhhccCCceEE-ecCCCcccccchHHH------H---hcCCCCCCCCcc
Q 036250 214 LQCAVCLEEFVMGNEAKE-MPCKHKFHGECIMPW------L---ELQSSCPICRYQ 259 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~-lpC~H~Fh~~Ci~~W------l---~~~~~CP~CR~~ 259 (347)
..| ||...... ...+. -.|...||..|+.-- | .....||.|+..
T Consensus 17 ~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 456 89887642 22222 138899999998321 1 245679999754
No 210
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=22.29 E-value=31 Score=26.93 Aligned_cols=29 Identities=14% Similarity=0.416 Sum_probs=17.0
Q ss_pred eeecCCceeeecCCCCccCCCCCCCceEec
Q 036250 10 WCYICSRMVNPRMEAGIKCPFCETGFVEQM 39 (347)
Q Consensus 10 wCh~C~~~V~p~~~~e~~CP~C~sGFiEE~ 39 (347)
.|-.|..++... +..+.|..|+.-|..+-
T Consensus 34 ~CP~Cq~eL~~~-g~~~hC~~C~~~f~~~a 62 (101)
T 2jne_A 34 HCPQCQHVLDQD-NGHARCRSCGEFIEMKA 62 (101)
T ss_dssp BCSSSCSBEEEE-TTEEEETTTCCEEEEEE
T ss_pred cCccCCCcceec-CCEEECccccchhhccc
Confidence 466777776533 22444777777666553
No 211
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.19 E-value=21 Score=20.73 Aligned_cols=13 Identities=38% Similarity=1.234 Sum_probs=10.5
Q ss_pred CccCCCCCCCceE
Q 036250 25 GIKCPFCETGFVE 37 (347)
Q Consensus 25 e~~CP~C~sGFiE 37 (347)
.++|+.|+..|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elp_A 9 AMKCPYCDFYFMK 21 (37)
T ss_dssp CEECSSSSCEECS
T ss_pred CeECCCCChhhcc
Confidence 3889999988864
No 212
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=21.81 E-value=40 Score=24.62 Aligned_cols=27 Identities=22% Similarity=0.621 Sum_probs=20.6
Q ss_pred CcEeeecCCceeeecCCCCccCCCCCC
Q 036250 7 GSYWCYICSRMVNPRMEAGIKCPFCET 33 (347)
Q Consensus 7 ~rywCh~C~~~V~p~~~~e~~CP~C~s 33 (347)
..-||..|...+.-....-+.|-.|.-
T Consensus 33 ~pt~C~~C~~~lwGl~kqG~~C~~C~~ 59 (77)
T 2enn_A 33 QPTFCSVCHEFVWGLNKQGYQCRQCNA 59 (77)
T ss_dssp SCEECSSSCCEECCTTCCEEECSSSCC
T ss_pred CCcCccccChhhccccccccCcCCCCC
Confidence 456899999999744445699999853
No 213
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=21.72 E-value=41 Score=23.73 Aligned_cols=18 Identities=33% Similarity=1.030 Sum_probs=13.6
Q ss_pred eecCCceeeecCCCCccCCCCCC
Q 036250 11 CYICSRMVNPRMEAGIKCPFCET 33 (347)
Q Consensus 11 Ch~C~~~V~p~~~~e~~CP~C~s 33 (347)
|-.|+..+.. + .||.|++
T Consensus 4 C~~C~~v~~~----~-~CpnC~~ 21 (59)
T 3lpe_B 4 CLKCKYLTND----E-ICPICHS 21 (59)
T ss_dssp ETTTCBEESS----S-BCTTTCC
T ss_pred cccCCcccCC----C-CCCCCCC
Confidence 7888887642 2 6999997
No 214
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.68 E-value=29 Score=24.68 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=26.0
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLP 261 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (347)
..|+-|...+.. ..+..-+..||..|. .|-.|...|.
T Consensus 6 ~~C~~C~~~I~~---~~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG---RVLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS---CCBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC---eeEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 368888887742 223346788998875 6888888876
No 215
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.48 E-value=33 Score=24.68 Aligned_cols=39 Identities=21% Similarity=0.539 Sum_probs=27.8
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|+.|...+. +. .+..-+..||..|. .|-.|...|...
T Consensus 16 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (81)
T 2dlo_A 16 EKCATCSQPIL-DR--ILRAMGKAYHPGCF--------TCVVCHRGLDGI 54 (81)
T ss_dssp CBCTTTCCBCC-SC--CEEETTEEECTTTC--------BCSSSCCBCTTS
T ss_pred CccccCCCeec-ce--eEEECCccccHHhc--------CcccCCCccCCC
Confidence 47999998885 22 33345778898775 689999888644
No 216
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=21.29 E-value=39 Score=24.60 Aligned_cols=17 Identities=35% Similarity=0.966 Sum_probs=12.2
Q ss_pred CccCCCCCCC-ceEecCC
Q 036250 25 GIKCPFCETG-FVEQMSS 41 (347)
Q Consensus 25 e~~CP~C~sG-FiEE~~~ 41 (347)
..+||.|++| .++...+
T Consensus 2 ~m~Cp~Cg~~~l~~~~~~ 19 (78)
T 3ga8_A 2 HMKCPVCHQGEMVSGIKD 19 (78)
T ss_dssp -CBCTTTSSSBEEEEEEE
T ss_pred ceECCCCCCCeeEeEEEE
Confidence 4789999988 6666543
No 217
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.21 E-value=23 Score=20.37 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=10.2
Q ss_pred CccCCCCCCCceE
Q 036250 25 GIKCPFCETGFVE 37 (347)
Q Consensus 25 e~~CP~C~sGFiE 37 (347)
.++|+.|+..|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elv_A 9 LYDCHICERKFKN 21 (36)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCccCC
Confidence 3889999988853
No 218
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.90 E-value=24 Score=20.29 Aligned_cols=12 Identities=25% Similarity=0.755 Sum_probs=9.6
Q ss_pred CccCCCCCCCce
Q 036250 25 GIKCPFCETGFV 36 (347)
Q Consensus 25 e~~CP~C~sGFi 36 (347)
-+.|+.|+..|.
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2els_A 9 IFTCEYCNKVFK 20 (36)
T ss_dssp CEECTTTCCEES
T ss_pred CEECCCCCceeC
Confidence 378999988874
No 219
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.82 E-value=33 Score=30.38 Aligned_cols=35 Identities=20% Similarity=0.487 Sum_probs=24.4
Q ss_pred cccchhhhhhhccCCceEE-ecCCCcccccchHHHH
Q 036250 213 DLQCAVCLEEFVMGNEAKE-MPCKHKFHGECIMPWL 247 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl 247 (347)
...|.+|...|..-..-.. -.||++||..|-..++
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 4689999999954322222 2399999999986543
No 220
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=20.58 E-value=21 Score=34.24 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=0.0
Q ss_pred cccchhhhhhhccCCc-eEEecCCCcccccchHHHHhc-------CCCCCCCCccc
Q 036250 213 DLQCAVCLEEFVMGNE-AKEMPCKHKFHGECIMPWLEL-------QSSCPICRYQL 260 (347)
Q Consensus 213 ~~~C~ICl~~~~~~~~-~~~lpC~H~Fh~~Ci~~Wl~~-------~~~CP~CR~~l 260 (347)
...|.+|...|..-.. ..--.||++||..|...++.. ...|-.|-..|
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4589999999943211 112249999999998765421 23476665544
No 221
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.48 E-value=44 Score=23.25 Aligned_cols=40 Identities=33% Similarity=0.589 Sum_probs=27.1
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPS 262 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (347)
..|..|...+...+ .++..-+..||..|. .|-.|...|..
T Consensus 6 ~~C~~C~~~I~~~~-~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x61_A 6 SGCGGCGEDVVGDG-AGVVALDRVFHVGCF--------VCSTCRAQLRG 45 (72)
T ss_dssp CCCSSSCSCCCSSS-CCEECSSSEECTTTC--------BCSSSCCBCTT
T ss_pred CCCccCCCccCCCc-eEEEECCCeEcccCC--------cccccCCcCCc
Confidence 46888888774322 233345778898775 68899888853
No 222
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.36 E-value=45 Score=23.78 Aligned_cols=39 Identities=21% Similarity=0.440 Sum_probs=27.6
Q ss_pred ccchhhhhhhccCCceEEecCCCcccccchHHHHhcCCCCCCCCcccCCC
Q 036250 214 LQCAVCLEEFVMGNEAKEMPCKHKFHGECIMPWLELQSSCPICRYQLPSD 263 (347)
Q Consensus 214 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (347)
..|+.|...+.. . .+..-+..||..|. .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~-~--~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE-N--YLSAMDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS-S--CEEETTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CccccCCCeecc-e--eEEECCCeEecCcC--------ChhhCCCCCCCC
Confidence 469999988853 2 23335678888775 689999888654
Done!