Query 036251
Match_columns 275
No_of_seqs 211 out of 1479
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 10:53:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 1.3E-47 2.8E-52 341.2 15.6 211 6-220 3-213 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 6.3E-22 1.4E-26 151.2 7.6 86 134-219 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 2E-21 4.2E-26 148.5 5.2 86 11-98 2-87 (87)
4 KOG1623 Multitransmembrane pro 99.5 1.2E-14 2.6E-19 130.1 7.3 92 130-221 4-96 (243)
5 COG4095 Uncharacterized conser 99.2 4.2E-11 9E-16 90.6 8.1 81 12-94 5-85 (89)
6 COG4095 Uncharacterized conser 99.1 1E-10 2.2E-15 88.6 5.7 84 131-217 4-87 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.8 5.2E-07 1.1E-11 80.5 17.8 195 11-210 3-215 (220)
8 PF04193 PQ-loop: PQ loop repe 98.3 1.5E-06 3.3E-11 61.6 5.5 56 13-69 3-58 (61)
9 KOG3211 Predicted endoplasmic 98.0 9.5E-05 2.1E-09 64.8 11.1 195 11-218 30-226 (230)
10 PF04193 PQ-loop: PQ loop repe 97.6 0.00011 2.4E-09 51.9 5.1 56 133-191 3-58 (61)
11 KOG2913 Predicted membrane pro 97.2 0.01 2.2E-07 54.3 13.9 175 8-187 5-215 (260)
12 PRK01021 lpxB lipid-A-disaccha 96.0 0.21 4.6E-06 50.8 14.7 191 10-211 8-215 (608)
13 smart00679 CTNS Repeated motif 95.2 0.016 3.5E-07 35.4 2.3 27 26-52 2-28 (32)
14 PHA02246 hypothetical protein 95.1 1.5 3.2E-05 37.3 14.1 168 15-203 8-178 (192)
15 TIGR00951 2A43 Lysosomal Cysti 94.8 0.14 3E-06 45.7 8.1 85 8-93 135-219 (220)
16 PF10688 Imp-YgjV: Bacterial i 93.3 2.2 4.8E-05 36.2 12.1 124 49-208 30-154 (163)
17 PF03650 MPC: Uncharacterised 91.1 0.057 1.2E-06 43.7 -0.3 80 139-223 23-104 (119)
18 smart00679 CTNS Repeated motif 90.9 0.21 4.6E-06 30.4 2.3 26 149-174 2-27 (32)
19 PF10688 Imp-YgjV: Bacterial i 87.5 1.1 2.3E-05 38.2 4.9 37 49-87 118-154 (163)
20 PHA02246 hypothetical protein 85.6 7.8 0.00017 33.0 8.9 62 18-80 115-176 (192)
21 KOG1589 Uncharacterized conser 85.3 0.22 4.7E-06 39.6 -0.5 65 149-218 37-103 (118)
22 KOG3211 Predicted endoplasmic 84.6 2.5 5.4E-05 37.6 5.7 73 24-97 154-226 (230)
23 KOG2489 Transmembrane protein 83.9 9 0.00019 38.3 9.8 192 20-223 329-558 (592)
24 PF03650 MPC: Uncharacterised 82.9 1.1 2.3E-05 36.4 2.6 60 37-97 39-99 (119)
25 TIGR00341 conserved hypothetic 82.3 14 0.0003 35.1 10.1 168 47-219 115-294 (325)
26 PF07578 LAB_N: Lipid A Biosyn 77.2 4.7 0.0001 29.8 4.2 63 16-81 2-64 (72)
27 KOG1589 Uncharacterized conser 75.0 2.6 5.6E-05 33.6 2.4 63 26-94 37-100 (118)
28 KOG3145 Cystine transporter Cy 72.4 38 0.00083 31.9 9.7 37 9-45 121-157 (372)
29 KOG2913 Predicted membrane pro 64.8 16 0.00034 33.6 5.6 56 131-189 8-63 (260)
30 PF07578 LAB_N: Lipid A Biosyn 53.6 23 0.0005 26.2 3.8 41 165-205 27-67 (72)
31 KOG2532 Permease of the major 51.0 66 0.0014 31.9 7.8 147 3-152 254-412 (466)
32 KOG4314 Predicted carbohydrate 51.0 66 0.0014 28.8 6.9 56 127-182 127-183 (290)
33 KOG2568 Predicted membrane pro 49.5 2.7E+02 0.0058 28.3 11.7 77 145-221 357-448 (518)
34 COG3952 Predicted membrane pro 49.2 10 0.00022 30.1 1.5 60 158-217 48-107 (113)
35 cd08764 Cyt_b561_CG1275_like N 40.2 2E+02 0.0043 25.6 8.4 23 131-153 96-118 (214)
36 PF09586 YfhO: Bacterial membr 39.1 4.8E+02 0.01 27.4 13.4 29 12-43 219-247 (843)
37 COG5196 ERD2 ER lumen protein 39.0 2.6E+02 0.0057 24.3 12.8 42 147-188 129-170 (214)
38 PF08733 PalH: PalH/RIM21; In 35.6 4E+02 0.0086 25.4 11.1 82 13-96 164-256 (348)
39 KOG3618 Adenylyl cyclase [Gene 35.2 4.8E+02 0.01 28.2 11.2 46 27-81 73-118 (1318)
40 PF07857 DUF1632: CEO family ( 34.1 95 0.0021 28.4 5.5 43 175-217 93-138 (254)
41 PF05602 CLPTM1: Cleft lip and 31.4 1.2E+02 0.0025 29.8 6.0 68 17-85 307-374 (438)
42 TIGR00910 2A0307_GadC glutamat 30.5 3.6E+02 0.0079 26.7 9.5 10 178-187 412-421 (507)
43 PF05297 Herpes_LMP1: Herpesvi 30.3 17 0.00037 34.0 0.0 73 132-205 104-177 (381)
44 PF01372 Melittin: Melittin; 27.4 1.1E+02 0.0023 18.0 2.9 16 24-39 9-24 (26)
45 PRK01021 lpxB lipid-A-disaccha 26.8 3E+02 0.0065 28.5 8.2 71 13-87 141-212 (608)
46 PRK05771 V-type ATP synthase s 26.8 7.1E+02 0.015 25.6 14.2 40 25-69 326-365 (646)
47 PLN02351 cytochromes b561 fami 26.5 5E+02 0.011 23.7 9.3 25 131-155 119-143 (242)
48 COG3952 Predicted membrane pro 25.8 3.5E+02 0.0075 21.6 6.8 47 44-92 56-103 (113)
49 PRK11387 S-methylmethionine tr 25.3 3.6E+02 0.0078 26.2 8.3 16 22-37 377-392 (471)
50 PHA03049 IMV membrane protein; 24.4 19 0.00041 26.1 -0.6 26 199-224 8-33 (68)
51 PF05602 CLPTM1: Cleft lip and 23.9 2E+02 0.0043 28.2 6.1 67 143-209 310-377 (438)
52 PF07954 DUF1689: Protein of u 23.8 2.3E+02 0.0049 24.0 5.6 31 9-44 33-63 (152)
53 TIGR00341 conserved hypothetic 23.8 1.4E+02 0.0031 28.3 4.9 52 44-97 242-293 (325)
54 PF15102 TMEM154: TMEM154 prot 23.8 1.8E+02 0.0038 24.5 4.9 29 192-220 60-88 (146)
55 PF06930 DUF1282: Protein of u 23.2 4.4E+02 0.0096 21.9 8.6 28 24-51 2-29 (170)
56 TIGR00271 uncharacterized hydr 22.7 5E+02 0.011 22.4 9.3 156 47-206 6-172 (175)
57 PF10277 Frag1: Frag1/DRAM/Sfk 22.5 4.7E+02 0.01 21.9 13.3 23 43-65 90-112 (215)
58 KOG2290 Rhomboid family protei 21.6 7.2E+02 0.016 25.2 9.2 56 27-95 531-588 (652)
59 PRK10580 proY putative proline 21.2 6.1E+02 0.013 24.5 9.0 20 19-38 367-386 (457)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=1.3e-47 Score=341.17 Aligned_cols=211 Identities=50% Similarity=0.937 Sum_probs=191.1
Q ss_pred chHHHHHHHHHHHHHHHHHHccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHH
Q 036251 6 PHSVIIFGLLGNIVSFLVYLAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESL 85 (275)
Q Consensus 6 ~~~~~i~~ilg~i~si~~~lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~ 85 (275)
+.+..++|++|++.++++|++|+|+++||+||||+|++|++||+++++||.+|+.||+++ ++.+.++.+|++|++++.+
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~-~~d~llitIN~~G~~ie~~ 81 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLK-VHDYLLITINGIGLVIETV 81 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhc-cCceEEEEEehhcHHHHHH
Confidence 346789999999999999999999999999999999999999999999999999999998 6346899999999999999
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhheecCchhHHHHHhhHHHHHHHHHHhhcHHHHHHHhcCCCccc
Q 036251 86 YLLFFMIYATKTAKIYTTKLLILFNIGALGLIVLLTYLLSKSSDQRLTIVGWICAVFSVCVFAAPLSIIRQVIRTKSVEY 165 (275)
Q Consensus 86 y~~v~~~y~~~k~r~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~lG~~a~v~si~~f~SPl~~i~~Virtkst~~ 165 (275)
|+..|+.|+++|++.. ......+.+++++++.++...++++.+.+.+|.+|.+++++||+|||..+++++|+||+|.
T Consensus 82 Yi~~f~~ya~~k~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~ 158 (243)
T KOG1623|consen 82 YISIFLYYAPKKKTVK---IVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEY 158 (243)
T ss_pred HHHHHheecCchheeE---eeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceee
Confidence 9999999999887332 2222344566666667777778887889999999999999999999999999999999999
Q ss_pred cchhhHHHHHhhhHHhhhhhcccCCeeEEechhHHHHHHHHHhhheeEeecCCCc
Q 036251 166 MPFSLSCCLTICAGMWLLYGLSIKDYYIATPNILGMAFGATQMILYLAYRTRRNS 220 (275)
Q Consensus 166 ~p~~~~~~~~~n~~lW~~YGll~~D~~I~~~N~~G~~l~~~ql~ly~~y~~~~~~ 220 (275)
||++++++.++++..|++||++++|.++.+||++|.++++.|+.+|++|++++.+
T Consensus 159 mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~~ 213 (243)
T KOG1623|consen 159 MPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTEK 213 (243)
T ss_pred echHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCccc
Confidence 9999999999999999999999999999999999999999999999999988743
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.86 E-value=6.3e-22 Score=151.21 Aligned_cols=86 Identities=31% Similarity=0.666 Sum_probs=84.0
Q ss_pred HHhhHHHHHHHHHHhhcHHHHHHHhcCCCccccchhhHHHHHhhhHHhhhhhcccCCeeEEechhHHHHHHHHHhhheeE
Q 036251 134 IVGWICAVFSVCVFAAPLSIIRQVIRTKSVEYMPFSLSCCLTICAGMWLLYGLSIKDYYIATPNILGMAFGATQMILYLA 213 (275)
Q Consensus 134 ~lG~~a~v~si~~f~SPl~~i~~Virtkst~~~p~~~~~~~~~n~~lW~~YGll~~D~~I~~~N~~G~~l~~~ql~ly~~ 213 (275)
++|.+|.+.++++++||++++++++|+||++++|+.|++++++||.+|+.||++++|++++++|++|.+++.+|+.+|++
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~ 81 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYI 81 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 036251 214 YRTRRN 219 (275)
Q Consensus 214 y~~~~~ 219 (275)
|+++||
T Consensus 82 y~~~~~ 87 (87)
T PF03083_consen 82 YPSKKK 87 (87)
T ss_pred eCCCCC
Confidence 999875
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.84 E-value=2e-21 Score=148.47 Aligned_cols=86 Identities=29% Similarity=0.607 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHHHHHHH
Q 036251 11 IFGLLGNIVSFLVYLAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESLYLLFF 90 (275)
Q Consensus 11 i~~ilg~i~si~~~lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~y~~v~ 90 (275)
++|++|.++++++++||+|+++|++|+||+|++|+.|+++.++||.+|+.||++. +|+ +++.+|++|.+++.+|+.+|
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~-~d~-~i~~~N~~g~~~~~~~~~~~ 79 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILI-NDW-PIIVPNVFGLVLSIIYLVVY 79 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhc-CCe-eEEeeHHHHHHHHHHHHhhe
Confidence 5789999999999999999999999999999999999999999999999999999 886 79999999999999999999
Q ss_pred HHhcccch
Q 036251 91 MIYATKTA 98 (275)
Q Consensus 91 ~~y~~~k~ 98 (275)
++|+++||
T Consensus 80 ~~y~~~~~ 87 (87)
T PF03083_consen 80 YIYPSKKK 87 (87)
T ss_pred EEeCCCCC
Confidence 99998875
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.54 E-value=1.2e-14 Score=130.09 Aligned_cols=92 Identities=25% Similarity=0.433 Sum_probs=87.1
Q ss_pred hHHHHHhhHHHHHHHHHHhhcHHHHHHHhcCCCccccchhhHHHHHhhhHHhhhhhcccC-CeeEEechhHHHHHHHHHh
Q 036251 130 QRLTIVGWICAVFSVCVFAAPLSIIRQVIRTKSVEYMPFSLSCCLTICAGMWLLYGLSIK-DYYIATPNILGMAFGATQM 208 (275)
Q Consensus 130 ~~~~~lG~~a~v~si~~f~SPl~~i~~Virtkst~~~p~~~~~~~~~n~~lW~~YGll~~-D~~I~~~N~~G~~l~~~ql 208 (275)
.....+|..|.++++++|++|+++++|++|+||+|+.+..|++++++||.+|+.||++.+ |..++..|.+|+++...|+
T Consensus 4 ~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Yi 83 (243)
T KOG1623|consen 4 VLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVYI 83 (243)
T ss_pred hHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999987 8999999999999999999
Q ss_pred hheeEeecCCCcc
Q 036251 209 ILYLAYRTRRNSE 221 (275)
Q Consensus 209 ~ly~~y~~~~~~~ 221 (275)
..|+.|.++|++.
T Consensus 84 ~~f~~ya~~k~~~ 96 (243)
T KOG1623|consen 84 SIFLYYAPKKKTV 96 (243)
T ss_pred HHHheecCchhee
Confidence 9999999998843
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=4.2e-11 Score=90.65 Aligned_cols=81 Identities=25% Similarity=0.403 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHHHHHHHH
Q 036251 12 FGLLGNIVSFLVYLAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESLYLLFFM 91 (275)
Q Consensus 12 ~~ilg~i~si~~~lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~y~~v~~ 91 (275)
.-.+|.++++...++.+||..+++|+|+++++|+..|+.....+++|+.||.+. +| .|+...|.++..++..-++.-.
T Consensus 5 ~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi-~~-lPii~aN~i~~il~liIl~~kI 82 (89)
T COG4095 5 IEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILI-ND-LPIIIANIISFILSLIILFYKI 82 (89)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHH-cc-CcchhHHHHHHHHHHHHHHHHH
Confidence 345677777778888999999999999999999999999999999999999999 77 5999999999999987766665
Q ss_pred Hhc
Q 036251 92 IYA 94 (275)
Q Consensus 92 ~y~ 94 (275)
+|.
T Consensus 83 ~~~ 85 (89)
T COG4095 83 KYI 85 (89)
T ss_pred HHH
Confidence 553
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=1e-10 Score=88.56 Aligned_cols=84 Identities=23% Similarity=0.481 Sum_probs=74.6
Q ss_pred HHHHHhhHHHHHHHHHHhhcHHHHHHHhcCCCccccchhhHHHHHhhhHHhhhhhcccCCeeEEechhHHHHHHHHHhhh
Q 036251 131 RLTIVGWICAVFSVCVFAAPLSIIRQVIRTKSVEYMPFSLSCCLTICAGMWLLYGLSIKDYYIATPNILGMAFGATQMIL 210 (275)
Q Consensus 131 ~~~~lG~~a~v~si~~f~SPl~~i~~Virtkst~~~p~~~~~~~~~n~~lW~~YGll~~D~~I~~~N~~G~~l~~~ql~l 210 (275)
..+.+|.+|+.++..+| +||+-+++|+||++++++.++......+.+|+.||++++|.++...|.++..++..-+..
T Consensus 4 ~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~ 80 (89)
T COG4095 4 FIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFY 80 (89)
T ss_pred hhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHH
Confidence 45678888888887655 999999999999999999999999999999999999999999999999999999988776
Q ss_pred eeEeecC
Q 036251 211 YLAYRTR 217 (275)
Q Consensus 211 y~~y~~~ 217 (275)
-..|..+
T Consensus 81 kI~~~~k 87 (89)
T COG4095 81 KIKYILK 87 (89)
T ss_pred HHHHHHh
Confidence 6655443
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.80 E-value=5.2e-07 Score=80.46 Aligned_cols=195 Identities=10% Similarity=0.024 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHh--------ccccCCcee---EeehhhHH
Q 036251 11 IFGLLGNIVSFLVYLAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYA--------SLKGSNAFM---LITINGIG 79 (275)
Q Consensus 11 i~~ilg~i~si~~~lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG--------~l~~~~~~~---vi~~N~~G 79 (275)
+-.++|.+..++-..+.+||+++++|+||++++|+..+..-..+...|..|- .-. +.++. +-.-+.+-
T Consensus 3 iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~-~~~~~~~~v~~edl~~ 81 (220)
T TIGR00951 3 LSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITN-EFPLSSPGVTQNDVFF 81 (220)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhh-ccccccCCCcHHHHHH
Confidence 3456777777777788999999999999999999999999999999999993 322 21111 11112332
Q ss_pred HHHHHHHH----HHHHHhcccchhHHHHHHHHHHHHHHHHHHH--HhhhheecCchhHHHHHhhHHHHHHHHHHhhcHHH
Q 036251 80 CIIESLYL----LFFMIYATKTAKIYTTKLLILFNIGALGLIV--LLTYLLSKSSDQRLTIVGWICAVFSVCVFAAPLSI 153 (275)
Q Consensus 80 ~~l~~~y~----~v~~~y~~~k~r~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~lG~~a~v~si~~f~SPl~~ 153 (275)
.+-+++-. .-+.+|.+..+|... +.........++..+ .........+.+....++.+...+++ .+-+||
T Consensus 82 ai~~~il~~l~~~q~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~---ikyiPQ 157 (220)
T TIGR00951 82 TLHAILICFIVLHQCGDYERGWQRVSN-PWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTL---VKYFPQ 157 (220)
T ss_pred HHHHHHHHHHHHHHHhhccccccccch-hHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---HHHhHH
Confidence 22222221 112223222111111 111000011111111 11111111222444455555555544 577999
Q ss_pred HHHHhcCCCccccchhhHHHHHhhhHHhhhhhcc-cCCeeEEechhHHHHHHHHHhhh
Q 036251 154 IRQVIRTKSVEYMPFSLSCCLTICAGMWLLYGLS-IKDYYIATPNILGMAFGATQMIL 210 (275)
Q Consensus 154 i~~Virtkst~~~p~~~~~~~~~n~~lW~~YGll-~~D~~I~~~N~~G~~l~~~ql~l 210 (275)
++...|+|||+++|....+..+..+..-..-... .+|...+..-.+++++..+.+.=
T Consensus 158 i~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~~Q 215 (220)
T TIGR00951 158 AATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFAAQ 215 (220)
T ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887777776666655553 36777777777888887765443
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=98.30 E-value=1.5e-06 Score=61.61 Aligned_cols=56 Identities=27% Similarity=0.389 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccccCCc
Q 036251 13 GLLGNIVSFLVYLAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSNA 69 (275)
Q Consensus 13 ~ilg~i~si~~~lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~~ 69 (275)
.++|.+..++..++.+||+++.+|+||++++|...+.....+..+|+.|.++. ++.
T Consensus 3 ~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~-~~~ 58 (61)
T PF04193_consen 3 NILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILS-NYP 58 (61)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 35667777777778999999999999999999999999999999999999988 443
No 9
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=97.97 E-value=9.5e-05 Score=64.80 Aligned_cols=195 Identities=14% Similarity=0.150 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHHH-HHH
Q 036251 11 IFGLLGNIVSFLVYLAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESLY-LLF 89 (275)
Q Consensus 11 i~~ilg~i~si~~~lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~y-~~v 89 (275)
+.+.+|.+....-.+--+||+.+|+.+||++++|...+..-+++-..-+.|.+-. +-+|.=. --.+=++++.+- +..
T Consensus 30 lsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~-g~pFss~-gE~~fLl~Q~vili~~ 107 (230)
T KOG3211|consen 30 LSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTS-GYPFSSY-GEYPFLLLQAVILILC 107 (230)
T ss_pred HHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhc-CCCchhH-HHHHHHHHHHHHHHHH
Confidence 3444555544444455899999999999999999999999999999999999987 4433222 222224444433 333
Q ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhheecCchhHHHHHhhHHHHHHHHHHhhcHHHHHHHhcCCCccccchh
Q 036251 90 FMIYATKTAKIYTTKLLILFNIGALGLIVLLTYLLSKSSDQRLTIVGWICAVFSVCVFAAPLSIIRQVIRTKSVEYMPFS 169 (275)
Q Consensus 90 ~~~y~~~k~r~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~lG~~a~v~si~~f~SPl~~i~~Virtkst~~~p~~ 169 (275)
.+.|+-..... .+.++ ..+ .+....+....+-...+..-..+ .-+.-.+-++|+..-.|+|+++.+++.
T Consensus 108 if~f~~~~~~~--v~~l~-----~~~-~v~~~~~sk~~p~~~~~L~~~~~---l~i~v~sr~~Qi~~n~~~~~tgqls~i 176 (230)
T KOG3211|consen 108 IFHFSGQTVTV--VQFLG-----YIA-LVVSVLASKALPLWIITLAQNLC---LPIVVVSRLLQIQCNYHNRSTGQLSLI 176 (230)
T ss_pred HHHhccceeeh--hhHHH-----HHH-HHHHHHHHhhhhHHHHHHHHhcC---chhhhHHHHHHHHHHhcccccchhHHH
Confidence 33444111110 11111 111 01111111111112222222222 223336889999999999999999999
Q ss_pred hHHHHHhhhHHhhhhhcc-cCCeeEEechhHHHHHHHHHhhheeEeecCC
Q 036251 170 LSCCLTICAGMWLLYGLS-IKDYYIATPNILGMAFGATQMILYLAYRTRR 218 (275)
Q Consensus 170 ~~~~~~~n~~lW~~YGll-~~D~~I~~~N~~G~~l~~~ql~ly~~y~~~~ 218 (275)
..+..+-.|..-..|.+. ++|+.+...-.+..+++..-..-..+|++++
T Consensus 177 t~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~ 226 (230)
T KOG3211|consen 177 TVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTA 226 (230)
T ss_pred HHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 999999999999999997 5777777777777777765544445555443
No 10
>PF04193 PQ-loop: PQ loop repeat
Probab=97.63 E-value=0.00011 Score=51.91 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=47.8
Q ss_pred HHHhhHHHHHHHHHHhhcHHHHHHHhcCCCccccchhhHHHHHhhhHHhhhhhcccCCe
Q 036251 133 TIVGWICAVFSVCVFAAPLSIIRQVIRTKSVEYMPFSLSCCLTICAGMWLLYGLSIKDY 191 (275)
Q Consensus 133 ~~lG~~a~v~si~~f~SPl~~i~~Virtkst~~~p~~~~~~~~~n~~lW~~YGll~~D~ 191 (275)
+.+|+++.++.. .+.+||+.+.+|+|+++++++......+..+.+|+.|++..++.
T Consensus 3 ~~~g~i~~~~~~---~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~ 58 (61)
T PF04193_consen 3 NILGIISIVLWI---ISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYP 58 (61)
T ss_pred HHHHHHHHHHHH---HHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345666655554 57799999999999999999999999999999999999987764
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=97.22 E-value=0.01 Score=54.28 Aligned_cols=175 Identities=14% Similarity=0.149 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHHHH
Q 036251 8 SVIIFGLLGNIVSFLVYLAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESLYL 87 (275)
Q Consensus 8 ~~~i~~ilg~i~si~~~lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~y~ 87 (275)
+.+.-.++|++.+++-..+-+||+....|+||.+++|+.+.+.-++....=+.|..+. +.. ++...-.+=.+++-..+
T Consensus 5 ~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~-~~~-~~~~~~~~yy~~~d~~l 82 (260)
T KOG2913|consen 5 NDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQ-PLG-STLKVQAVYYTLADSVL 82 (260)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhc-ccc-hhHHHHHHHHHHHHHHH
Confidence 4466677888888888888999999999999999999999998888888888888887 332 22222222222222223
Q ss_pred HHHHHhcccchh---------HHH--HH--HHHH---------------HHHHHHHHHHHhhh--he---e-cCch-hHH
Q 036251 88 LFFMIYATKTAK---------IYT--TK--LLIL---------------FNIGALGLIVLLTY--LL---S-KSSD-QRL 132 (275)
Q Consensus 88 ~v~~~y~~~k~r---------~~~--~~--~~~~---------------~~~~~~~~i~~~~~--~~---~-~~~~-~~~ 132 (275)
.+...|.+++.+ .+. .- .+.. ......+....... +. . ...+ ...
T Consensus 83 ~~q~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (260)
T KOG2913|consen 83 FVQCLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLICGAAYESLLRAVRVNGLEI 162 (260)
T ss_pred HHHHHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHHHHHhhccccccccchhhh
Confidence 333444332221 000 00 0000 00000000000000 00 0 0111 223
Q ss_pred HHHhh-HHHHHHHHHHhhcHHHHHHHhcCCCccccchhhHHHHHhhhHHhhhhhcc
Q 036251 133 TIVGW-ICAVFSVCVFAAPLSIIRQVIRTKSVEYMPFSLSCCLTICAGMWLLYGLS 187 (275)
Q Consensus 133 ~~lG~-~a~v~si~~f~SPl~~i~~Virtkst~~~p~~~~~~~~~n~~lW~~YGll 187 (275)
+.+|. ++...+.+-.++++||+..-+|.|+++++++.++ .+++..=..|+.-
T Consensus 163 ~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F---~~~~~~n~~y~~s 215 (260)
T KOG2913|consen 163 DSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAF---AFNSLGNTTYILS 215 (260)
T ss_pred cchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHH---HHHHccccccccc
Confidence 34454 4445556677899999999999999999988666 5677777778766
No 12
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.99 E-value=0.21 Score=50.83 Aligned_cols=191 Identities=14% Similarity=0.108 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHhccCCCCcchhH-HHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHHHHH
Q 036251 10 IIFGLLGNIVSFLVYLAPLPTFYRIFKKKSTQGFQSIPY-SVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESLYLL 88 (275)
Q Consensus 10 ~i~~ilg~i~si~~~lSp~p~~~~I~k~kstg~~s~lp~-~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~y~~ 88 (275)
...=.+|.+..++...--+-|-+.--|+|.+ +-|.-| ...+.++.+-+.||++. +| ++++.-..+|.++..=-+.
T Consensus 8 ~~~~~~G~~~q~~F~~rf~~QW~~sek~~~s--~~p~~FW~~Sl~g~~~l~~y~~~~-~~-~~~~~~q~~~~~iy~rNl~ 83 (608)
T PRK01021 8 LWLYPLGLFANLFFGSAFCIQWFLSKKRKYS--YVPKIFWILSSIGAVLMICHGFIQ-SQ-FPIALLHSFNLIIYFRNLN 83 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cCchHHHHHHHHHHHHHHHHHHHh-cC-CcEEEecccceEEEeehhh
Confidence 3344456666655544455565555555543 444444 45678888999999988 66 3677655555443211111
Q ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHH-HHHhhhheec-----------C----chhHHHHHhhHHHHHHHHHHhhcHH
Q 036251 89 FFMIYATKTAKIYTTKLLILFNIGALGL-IVLLTYLLSK-----------S----SDQRLTIVGWICAVFSVCVFAAPLS 152 (275)
Q Consensus 89 v~~~y~~~k~r~~~~~~~~~~~~~~~~~-i~~~~~~~~~-----------~----~~~~~~~lG~~a~v~si~~f~SPl~ 152 (275)
+ -.+.+.-.+..-++.+..++.+++ +.+.+++... . .+..-..+|.+|-++-..-| +-
T Consensus 84 l---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~Rf---~~ 157 (608)
T PRK01021 84 I---ASSRPLSVSKTLSLLVLSATAITLPFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSLRF---FI 157 (608)
T ss_pred h---cccccchHHHHHHHHHhhhHhhhhHHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHHHH---HH
Confidence 1 111221111110111111111111 1122222111 1 11223445555544433222 22
Q ss_pred HHHHHhcCCCccccchhhHHHHHhhhHHhhhhhcccCCeeEEechhHHHHHHHHHhhhe
Q 036251 153 IIRQVIRTKSVEYMPFSLSCCLTICAGMWLLYGLSIKDYYIATPNILGMAFGATQMILY 211 (275)
Q Consensus 153 ~i~~Virtkst~~~p~~~~~~~~~n~~lW~~YGll~~D~~I~~~N~~G~~l~~~ql~ly 211 (275)
|-..--| +.-+.+|...-..+++.+.+-+.|++..+|...+...+.|++..+--+.+.
T Consensus 158 Qw~~se~-~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl~li 215 (608)
T PRK01021 158 QWFYLEY-NNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANLRIA 215 (608)
T ss_pred HHHHHHh-cCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHHHHH
Confidence 2222222 222346777677789999999999999999999999999998877665443
No 13
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=95.22 E-value=0.016 Score=35.43 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHhccCCCCcchhHHHHH
Q 036251 26 APLPTFYRIFKKKSTQGFQSIPYSVAL 52 (275)
Q Consensus 26 Sp~p~~~~I~k~kstg~~s~lp~~~~~ 52 (275)
+.+||+++++|+||++++|+..+.+.+
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHH
Confidence 568999999999999999876655443
No 14
>PHA02246 hypothetical protein
Probab=95.06 E-value=1.5 Score=37.28 Aligned_cols=168 Identities=17% Similarity=0.226 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccccCC-ceeEeehhhHHHHHHHHHHHHHHHh
Q 036251 15 LGNIVSFLVYLAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSN-AFMLITINGIGCIIESLYLLFFMIY 93 (275)
Q Consensus 15 lg~i~si~~~lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~-~~~vi~~N~~G~~l~~~y~~v~~~y 93 (275)
+...-++......+|+...+.|.|+++++|-. ||-...-..+--.|.++.-++ .|.++. -+....++++.+.+-- |
T Consensus 8 ~s~~yailit~gYipgL~slvk~~nv~GvS~~-FWYLi~~tvgiSfyNlL~T~~~~fqi~s-vg~nl~lgivcLlv~~-~ 84 (192)
T PHA02246 8 LSILYAILITVGYIPGLVALVKAESVKGVSNY-FWYLIVATVGISFYNLLLTDASVFQIVS-VGLNLTLGIVCLLVAS-Y 84 (192)
T ss_pred HHHHHHHHHHhhhhhhHHHHhhhcccccHHHH-HHHHHHHHHHHHHHHHHhcCCceEEEee-eehhhhhhhhheeeeh-h
Confidence 33444555666789999999999999998743 555556667777888865222 254443 2333455544433211 2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhheecCchhHHHHHhhHHHHHHHHHHhhcHHHHHHHhcCCCccccchhhHHH
Q 036251 94 ATKTAKIYTTKLLILFNIGALGLIVLLTYLLSKSSDQRLTIVGWICAVFSVCVFAAPLSIIRQVIRTKSVEYMPFSLSCC 173 (275)
Q Consensus 94 ~~~k~r~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~lG~~a~v~si~~f~SPl~~i~~Virtkst~~~p~~~~~~ 173 (275)
|+|....+-+. ..+. +.++...+..+..+.+|.. ...++-++|+.+-+|||++|+.+..+.+.
T Consensus 85 ---rkkd~f~~~fi----iifS----Lllfll~~~~evtQtVat~------tIiLaYi~QIIqfyKTK~SEg~n~~l~li 147 (192)
T PHA02246 85 ---RKKDYFSIPFI----IVFS----LLLFLLSDFTALTQTVATI------TIILAYVTQITTFYKTKSAEGTNRFLFLI 147 (192)
T ss_pred ---hccccccchHH----HHHH----HHHHHHhhhHHHHHHHHHH------HHHHHHHHHHHHHhhhcccCCCChhHHHH
Confidence 22211111110 1111 1111111221223333322 22346689999999999999987655532
Q ss_pred HHhhhHHhhhhhcccCC--eeEEechhHHHHH
Q 036251 174 LTICAGMWLLYGLSIKD--YYIATPNILGMAF 203 (275)
Q Consensus 174 ~~~n~~lW~~YGll~~D--~~I~~~N~~G~~l 203 (275)
.. -++.-+.......+ .+++++-....++
T Consensus 148 i~-~GL~~L~~~m~Lthv~~hIiiTEf~N~iL 178 (192)
T PHA02246 148 IG-LGLASLIVSMVLTHTYVHIIATEFVNFVL 178 (192)
T ss_pred HH-HHHHHHHHHHhhhCCcceeeHHHHHHHHH
Confidence 21 22223334444433 4577665555444
No 15
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=94.84 E-value=0.14 Score=45.72 Aligned_cols=85 Identities=11% Similarity=0.165 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHHHH
Q 036251 8 SVIIFGLLGNIVSFLVYLAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESLYL 87 (275)
Q Consensus 8 ~~~i~~ilg~i~si~~~lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~y~ 87 (275)
+..++..++.+--.....+-+||++.-+|+|||++.|......-+.+++.=+.-.....+| ...+....++..++.+++
T Consensus 135 ~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd-~~~l~~~~~s~~~n~i~~ 213 (220)
T TIGR00951 135 PLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGD-PLKAGLFVVSSLFNGLFA 213 (220)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHH
Confidence 5566666666666667779999999999999999999999888888765555555544244 356667777777777776
Q ss_pred HHHHHh
Q 036251 88 LFFMIY 93 (275)
Q Consensus 88 ~v~~~y 93 (275)
.-.+.|
T Consensus 214 ~Q~~~y 219 (220)
T TIGR00951 214 AQVFFY 219 (220)
T ss_pred HHHhhc
Confidence 654444
No 16
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=93.33 E-value=2.2 Score=36.24 Aligned_cols=124 Identities=9% Similarity=0.145 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhheecCc
Q 036251 49 SVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESLYLLFFMIYATKTAKIYTTKLLILFNIGALGLIVLLTYLLSKSS 128 (275)
Q Consensus 49 ~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~y~~v~~~y~~~k~r~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 128 (275)
......|.++...-.+. +.+ +-+.+..++..=..+..++++ +.. ..+ +.++..+.+....
T Consensus 30 ~~~~~~~~~~~ihf~LL-Ga~-----taa~~~~ls~~R~~~s~~~~~---~~v--~~~------Fi~~~~~~~~~~~--- 89 (163)
T PF10688_consen 30 LLQAISCLLFAIHFALL-GAW-----TAALSMLLSAVRNFVSIRTRS---RWV--MAV------FIALSLVMGLFTW--- 89 (163)
T ss_pred HHHHHHHHHHHHHHHHh-ChH-----HHHHHHHHHHHHHHHHHHhCC---HHH--HHH------HHHHHHHHHHHHH---
Confidence 45566677777776666 553 455666666665555555443 211 111 1111222233322
Q ss_pred hhHHHHHhhHHHHHHHH-HHhhcHHHHHHHhcCCCccccchhhHHHHHhhhHHhhhhhcccCCeeEEechhHHHHHHHHH
Q 036251 129 DQRLTIVGWICAVFSVC-VFAAPLSIIRQVIRTKSVEYMPFSLSCCLTICAGMWLLYGLSIKDYYIATPNILGMAFGATQ 207 (275)
Q Consensus 129 ~~~~~~lG~~a~v~si~-~f~SPl~~i~~Virtkst~~~p~~~~~~~~~n~~lW~~YGll~~D~~I~~~N~~G~~l~~~q 207 (275)
+...+.++.+|++.... +| +++ +.. +=...++++.+|+.|+++++++.....|...+..+.+.
T Consensus 90 ~g~~~~l~~~as~~~t~a~f-----------~~~---~~~--mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 90 QGWIELLPYAASVLGTIALF-----------MLD---GIK--MRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLIT 153 (163)
T ss_pred hhHHHHHHHHHHHHHHHHHH-----------hcC---chh--HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 24567777776665542 22 111 111 23557899999999999999999988888888777665
Q ss_pred h
Q 036251 208 M 208 (275)
Q Consensus 208 l 208 (275)
+
T Consensus 154 i 154 (163)
T PF10688_consen 154 I 154 (163)
T ss_pred H
Confidence 3
No 17
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=91.11 E-value=0.057 Score=43.68 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhcHHHHHHHhcCCCccccchhhHHHHHhhhHHhhhhhccc--CCeeEEechhHHHHHHHHHhhheeEeec
Q 036251 139 CAVFSVCVFAAPLSIIRQVIRTKSVEYMPFSLSCCLTICAGMWLLYGLSI--KDYYIATPNILGMAFGATQMILYLAYRT 216 (275)
Q Consensus 139 a~v~si~~f~SPl~~i~~Virtkst~~~p~~~~~~~~~n~~lW~~YGll~--~D~~I~~~N~~G~~l~~~ql~ly~~y~~ 216 (275)
|.++.=++-++++.++ +|..|.++..+..+.++.+.+|+.|++.+ +|+.++..|+.-...+.+|+.=++.|..
T Consensus 23 aP~~kWgl~iA~i~D~-----~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~ 97 (119)
T PF03650_consen 23 APVAKWGLPIAGIADM-----KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQY 97 (119)
T ss_pred hhheeheeeeeehhhc-----CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334433344556654 58999999999999999999999999987 6888999999999999999998888876
Q ss_pred CCCcccc
Q 036251 217 RRNSEIL 223 (275)
Q Consensus 217 ~~~~~~~ 223 (275)
.+++...
T Consensus 98 ~~~~~~~ 104 (119)
T PF03650_consen 98 SQKKEAK 104 (119)
T ss_pred hcCchhH
Confidence 6655443
No 18
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=90.92 E-value=0.21 Score=30.35 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=22.2
Q ss_pred hcHHHHHHHhcCCCccccchhhHHHH
Q 036251 149 APLSIIRQVIRTKSVEYMPFSLSCCL 174 (275)
Q Consensus 149 SPl~~i~~Virtkst~~~p~~~~~~~ 174 (275)
+-+||+.+++|+|+++++++...+..
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~ 27 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLW 27 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHH
Confidence 56899999999999999998777533
No 19
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=87.45 E-value=1.1 Score=38.16 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHHHH
Q 036251 49 SVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESLYL 87 (275)
Q Consensus 49 ~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~y~ 87 (275)
..+++++.+|+.|+++. +++ +....|++....+.+.+
T Consensus 118 ~~~l~~~~~w~~~n~~i-gS~-~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNILI-GSW-GGTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHHHHH-cCH-HHHHHHHHHHHHHHHHH
Confidence 46889999999999999 775 67888988888876443
No 20
>PHA02246 hypothetical protein
Probab=85.57 E-value=7.8 Score=32.97 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=40.6
Q ss_pred HHHHHHHHccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccccCCceeEeehhhHHH
Q 036251 18 IVSFLVYLAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSNAFMLITINGIGC 80 (275)
Q Consensus 18 i~si~~~lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~ 80 (275)
+++....++.+||+.+-+|+|+.||.|..-|+..-.+-.+-..--.++ +-..-++.+-....
T Consensus 115 Vat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lt-hv~~hIiiTEf~N~ 176 (192)
T PHA02246 115 VATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLT-HTYVHIIATEFVNF 176 (192)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhh-CCcceeeHHHHHHH
Confidence 344455668899999999999999999888777666544444444455 43323454444433
No 21
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.33 E-value=0.22 Score=39.61 Aligned_cols=65 Identities=23% Similarity=0.389 Sum_probs=54.7
Q ss_pred hcHHHHHHHhcCCCccccchhhHHHHHhhhHHhhhhhccc--CCeeEEechhHHHHHHHHHhhheeEeecCC
Q 036251 149 APLSIIRQVIRTKSVEYMPFSLSCCLTICAGMWLLYGLSI--KDYYIATPNILGMAFGATQMILYLAYRTRR 218 (275)
Q Consensus 149 SPl~~i~~Virtkst~~~p~~~~~~~~~n~~lW~~YGll~--~D~~I~~~N~~G~~l~~~ql~ly~~y~~~~ 218 (275)
+.+.++ .|..|.++..-.++.+..+++|+.|.+.+ +|+.++..|.+=.+.+++|+.=.+.|....
T Consensus 37 AglaD~-----arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~ 103 (118)
T KOG1589|consen 37 AGLADL-----ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQQ 103 (118)
T ss_pred ecHHhh-----cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555 46788889999999999999999999987 789999999999999999999888884433
No 22
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=84.61 E-value=2.5 Score=37.55 Aligned_cols=73 Identities=11% Similarity=0.149 Sum_probs=61.5
Q ss_pred HHccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHHHHHHHHHhcccc
Q 036251 24 YLAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESLYLLFFMIYATKT 97 (275)
Q Consensus 24 ~lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~y~~v~~~y~~~k 97 (275)
-.|-++|+..-+|+|++|..|.+....-+..|..=+.|.... .+.+.+...-.+...++.+-..-.++|.+++
T Consensus 154 v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~-t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~ 226 (230)
T KOG3211|consen 154 VVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQE-TGDFLMLLRFVISLALNGLITAQVLRYWSTA 226 (230)
T ss_pred hHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHh-cCChhhHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 457889999999999999999999999999999999999988 4446777778888888887777777776654
No 23
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=83.92 E-value=9 Score=38.30 Aligned_cols=192 Identities=16% Similarity=0.093 Sum_probs=119.5
Q ss_pred HHHHHHccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHHHHHH----------
Q 036251 20 SFLVYLAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESLYLLF---------- 89 (275)
Q Consensus 20 si~~~lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~y~~v---------- 89 (275)
++.=|++-=-++.-+.||||-+++|.=..+.-+.+++.=.+|=+=. +-.+.|..+-++|++++.+=+--
T Consensus 329 ~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYllDn-eTs~mVlvs~gvG~~IE~WKi~K~m~v~id~~g 407 (592)
T KOG2489|consen 329 SVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYLLDN-ETSFMVLVSVGVGLLIELWKIKKAMKVEIDWSG 407 (592)
T ss_pred HHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhheeecC-CccEEEEEeccceeeeeeeecceEEEEEEeccc
Confidence 4444677777888899999999999988888888887777775543 33467888899999887543211
Q ss_pred --H-----------HHhcccchhH---HHHHHHHHHHHHHHHHHHHhhhheecCchhHHHHHhhHHHHHHHHHHhhcHHH
Q 036251 90 --F-----------MIYATKTAKI---YTTKLLILFNIGALGLIVLLTYLLSKSSDQRLTIVGWICAVFSVCVFAAPLSI 153 (275)
Q Consensus 90 --~-----------~~y~~~k~r~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~lG~~a~v~si~~f~SPl~~ 153 (275)
+ -.|+.++.+. ...|.+..+-.-.+...+++++...+-..-..-++..+.+.+-.+-|+-.+||
T Consensus 408 ~i~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQ 487 (592)
T KOG2489|consen 408 LIPGVLPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQ 487 (592)
T ss_pred ccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChH
Confidence 1 1122111111 12344432111111112233333333333555666666666666778888999
Q ss_pred HHHHhcCCCccccchhhHHHHHhhhHHhhhhhc------------ccCCeeEEechhHHHHHHHHHhhheeEeecCCCcc
Q 036251 154 IRQVIRTKSVEYMPFSLSCCLTICAGMWLLYGL------------SIKDYYIATPNILGMAFGATQMILYLAYRTRRNSE 221 (275)
Q Consensus 154 i~~Virtkst~~~p~~~~~~~~~n~~lW~~YGl------------l~~D~~I~~~N~~G~~l~~~ql~ly~~y~~~~~~~ 221 (275)
+---.|-||++.+|..+..-=++|.++==++++ +.+|+. + ++|+.--|.||=+++|+
T Consensus 488 LFINYKLKSVAHLPWR~~tYKa~NTFIDDlFAFVIkMPt~hRl~CfRDDIV-F----------lIYLYQRWlYpVD~tRv 556 (592)
T KOG2489|consen 488 LFINYKLKSVAHLPWRAFTYKAFNTFIDDLFAFVIKMPTLHRLACFRDDIV-F----------LIYLYQRWLYPVDKTRV 556 (592)
T ss_pred HHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccceE-E----------EeeehhhhccccChhhh
Confidence 999999999999999998777777654333333 234421 1 23666668899888887
Q ss_pred cc
Q 036251 222 IL 223 (275)
Q Consensus 222 ~~ 223 (275)
+.
T Consensus 557 NE 558 (592)
T KOG2489|consen 557 NE 558 (592)
T ss_pred hh
Confidence 54
No 24
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=82.94 E-value=1.1 Score=36.41 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=50.8
Q ss_pred hccCCCCcchhHHHHHHHHHHHHHHhcccc-CCceeEeehhhHHHHHHHHHHHHHHHhcccc
Q 036251 37 KKSTQGFQSIPYSVALFSAMLLLYYASLKG-SNAFMLITINGIGCIIESLYLLFFMIYATKT 97 (275)
Q Consensus 37 ~kstg~~s~lp~~~~~~n~~lW~~YG~l~~-~~~~~vi~~N~~G~~l~~~y~~v~~~y~~~k 97 (275)
+|..+.+|.-.-..+++-+.+|+.|++.+. .| +.++.+|.+-...+.+.+.=++.|....
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~N-y~L~a~n~~~~~~q~~Ql~R~~~y~~~~ 99 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRN-YLLFACNFFNATTQLYQLYRKLNYQYSQ 99 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCch-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578999999999999999999999999653 45 5799999999999999988777776543
No 25
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=82.27 E-value=14 Score=35.10 Aligned_cols=168 Identities=14% Similarity=0.091 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHHHHHHHHHhhhhe
Q 036251 47 PYSVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESLYLLFFMIYATKTAKIYT--TKLLILFNIGALGLIVLLTYLL 124 (275)
Q Consensus 47 p~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~y~~v~~~y~~~k~r~~~--~~~~~~~~~~~~~~i~~~~~~~ 124 (275)
.|+.+...+..=-..|++. |+...++.+=.++=+++-+.-..+-.-..|++..+. ...+....+ .+...++++++.
T Consensus 115 ~yl~~l~lA~iIA~iGLl~-nS~avIIGAMlIaPlmgPi~a~a~g~~~~d~~L~~rsl~~l~~g~~~-ai~~~~~~~~~~ 192 (325)
T TIGR00341 115 GRSVVTILAGIIALSGLIM-NNAVILIGAMIIAPLLGPIHGFAVNLSVGDVKLAFRSAKNLLFDLFL-VIVFSTIFAMMI 192 (325)
T ss_pred hHHHHHHHHHHHHHHhhcc-cCHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 4778888888889999999 776445555555555665555555544444432211 111111000 111111222221
Q ss_pred ---ecCchhH-HHHHhhHHHHHHHHHHhhcHHHHHHHhcCCCcc------ccchhhHHHHHhhhHHhhhhhcccCCeeEE
Q 036251 125 ---SKSSDQR-LTIVGWICAVFSVCVFAAPLSIIRQVIRTKSVE------YMPFSLSCCLTICAGMWLLYGLSIKDYYIA 194 (275)
Q Consensus 125 ---~~~~~~~-~~~lG~~a~v~si~~f~SPl~~i~~Virtkst~------~~p~~~~~~~~~n~~lW~~YGll~~D~~I~ 194 (275)
..+++.. +...+....+..+ +++........+.++.. .....|..+...-++.|--|....+-...+
T Consensus 193 ~~~~~~~ei~~r~~p~~~~l~vAl---~aG~AGalsl~~~~s~aLvGVaIAvaLvPPa~~~Gi~la~g~~~~a~ga~~L~ 269 (325)
T TIGR00341 193 GLVQLTPQILSRTEVSPVSEILAV---LAGIAGILSLSSGILESLAGVAISASLLPPAVATGILLVISPLPLAVKSLILT 269 (325)
T ss_pred ccccCCHHHHHhcCCCHHHHHHHH---HHHHHHHHHHhhccccchHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHH
Confidence 1111111 1112233322222 34444444555555544 123444444555556666666666777788
Q ss_pred echhHHHHHHHHHhhheeEeecCCC
Q 036251 195 TPNILGMAFGATQMILYLAYRTRRN 219 (275)
Q Consensus 195 ~~N~~G~~l~~~ql~ly~~y~~~~~ 219 (275)
..|.+|+.++..-.+.++-|++.+.
T Consensus 270 ~~Nl~~I~la~~~vf~~~g~~p~~~ 294 (325)
T TIGR00341 270 LINVAGLMAGSLAGVYVYGIRAYRY 294 (325)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchh
Confidence 9999999999888777777766554
No 26
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=77.16 E-value=4.7 Score=29.81 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=38.5
Q ss_pred HHHHHHHHHHccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccccCCceeEeehhhHHHH
Q 036251 16 GNIVSFLVYLAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSNAFMLITINGIGCI 81 (275)
Q Consensus 16 g~i~si~~~lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~ 81 (275)
|.+..++...--+-|-....|+|.+ .++..=....+.++.+-+.||+.+ +|+ ..+...++|.+
T Consensus 2 G~~gq~lF~~Rf~~QW~~SEk~k~s-v~P~~FW~lSl~Gs~lll~Y~i~r-~Dp-V~ilgq~~gl~ 64 (72)
T PF07578_consen 2 GFIGQLLFSSRFIVQWIYSEKAKKS-VVPVAFWYLSLIGSLLLLIYAIIR-KDP-VFILGQSFGLF 64 (72)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHHHHHHH-cCh-HHHHHHhcChH
Confidence 4444555544555666666666653 233333566788899999999999 885 33334444443
No 27
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.95 E-value=2.6 Score=33.60 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=52.0
Q ss_pred ccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccc-cCCceeEeehhhHHHHHHHHHHHHHHHhc
Q 036251 26 APLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLK-GSNAFMLITINGIGCIIESLYLLFFMIYA 94 (275)
Q Consensus 26 Sp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~-~~~~~~vi~~N~~G~~l~~~y~~v~~~y~ 94 (275)
+++-++ .|..|.+|.........-.+.|..|++.+ +.| +.++.+|.+=.+.+++.+.=.+.|.
T Consensus 37 AglaD~-----arP~eklS~~q~~al~aTg~IWtRySlVI~PkN-~~LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 37 AGLADL-----ARPPEKLSYAQNAALTATGLIWTRYSLVITPKN-YSLFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred ecHHhh-----cCChHHcChhhhHHHHHhhhhheeeeEEEeccc-hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 57888999999999999999999999954 355 5799999999999999888777774
No 28
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=72.41 E-value=38 Score=31.93 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhccCCCCcc
Q 036251 9 VIIFGLLGNIVSFLVYLAPLPTFYRIFKKKSTQGFQS 45 (275)
Q Consensus 9 ~~i~~ilg~i~si~~~lSp~p~~~~I~k~kstg~~s~ 45 (275)
+.+-.++|.+--+.=..|..||++-=+||||+.++|+
T Consensus 121 ~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnf 157 (372)
T KOG3145|consen 121 VILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNF 157 (372)
T ss_pred HHHHhhhheeEEEEEeeeechHHHhhhhhcceecccc
Confidence 3444555655544555678999999999999998764
No 29
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=64.81 E-value=16 Score=33.62 Aligned_cols=56 Identities=20% Similarity=0.014 Sum_probs=39.9
Q ss_pred HHHHHhhHHHHHHHHHHhhcHHHHHHHhcCCCccccchhhHHHHHhhhHHhhhhhcccC
Q 036251 131 RLTIVGWICAVFSVCVFAAPLSIIRQVIRTKSVEYMPFSLSCCLTICAGMWLLYGLSIK 189 (275)
Q Consensus 131 ~~~~lG~~a~v~si~~f~SPl~~i~~Virtkst~~~p~~~~~~~~~n~~lW~~YGll~~ 189 (275)
...++|.+..+.. -.+-.||+.+..|+|+.+++|....+...+....-+.|..+.+
T Consensus 8 ~s~~~g~ls~~~w---~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~ 63 (260)
T KOG2913|consen 8 LSTILGILSTVCW---CVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQP 63 (260)
T ss_pred HHHHHHHHHHHhh---hhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcc
Confidence 3344444444443 3455999999999999999999998777777766666666654
No 30
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=53.63 E-value=23 Score=26.17 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=32.5
Q ss_pred ccchhhHHHHHhhhHHhhhhhcccCCeeEEechhHHHHHHH
Q 036251 165 YMPFSLSCCLTICAGMWLLYGLSIKDYYIATPNILGMAFGA 205 (275)
Q Consensus 165 ~~p~~~~~~~~~n~~lW~~YGll~~D~~I~~~N~~G~~l~~ 205 (275)
.+|..--..+.+.+.+-+.||+..+|+..+...+.|.+...
T Consensus 27 v~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~iy~ 67 (72)
T PF07578_consen 27 VVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFIYI 67 (72)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHHHH
Confidence 35766667789999999999999999977777777766543
No 31
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=51.04 E-value=66 Score=31.87 Aligned_cols=147 Identities=19% Similarity=0.265 Sum_probs=82.5
Q ss_pred ccCch--HHHHHHHHHHHHHHHHHHccHHHHHHH---HHhccCCCCcchhHHHHHHHHHHHHHHhccccC----CceeEe
Q 036251 3 ILGPH--SVIIFGLLGNIVSFLVYLAPLPTFYRI---FKKKSTQGFQSIPYSVALFSAMLLLYYASLKGS----NAFMLI 73 (275)
Q Consensus 3 ~~~~~--~~~i~~ilg~i~si~~~lSp~p~~~~I---~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~----~~~~vi 73 (275)
|+++. |...+...|--.++.+++.-.|+..+= ..-|++|=+|.+|++.+......+-.-.-.... .....-
T Consensus 254 i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rk 333 (466)
T KOG2532|consen 254 ILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRK 333 (466)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHH
Confidence 45555 777788888888888889999998762 234567778999999998877776555431101 111234
Q ss_pred ehhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhhe--ec-CchhHHHHHhhHHHHHHHHHHhhc
Q 036251 74 TINGIGCIIESLYLLFFMIYATKTAKIYTTKLLILFNIGALGLIVLLTYLL--SK-SSDQRLTIVGWICAVFSVCVFAAP 150 (275)
Q Consensus 74 ~~N~~G~~l~~~y~~v~~~y~~~k~r~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~~~~~~~~lG~~a~v~si~~f~SP 150 (275)
.-|.++.....+.+.+-- |.++..+...+-.+. ......+ ......+. .. .++....++|..-.+.++..+.+|
T Consensus 334 ifn~i~~~~~ai~l~~l~-~~~~~~~~~a~~~l~-~~~~~~g-~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P 410 (466)
T KOG2532|consen 334 IFNTIAFGGPAVFLLVLA-FTSDEHRLLAVILLT-IAIGLSG-FNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAP 410 (466)
T ss_pred HHHhHHHHHHHHHHHeee-ecCCCcchHHHHHHH-HHHHHcc-cchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888876665433 434333321111111 0000000 01111111 11 333445566777777777777777
Q ss_pred HH
Q 036251 151 LS 152 (275)
Q Consensus 151 l~ 152 (275)
+.
T Consensus 411 ~~ 412 (466)
T KOG2532|consen 411 LL 412 (466)
T ss_pred Hh
Confidence 66
No 32
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=51.01 E-value=66 Score=28.79 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=44.9
Q ss_pred CchhHHHHHhhHHHHHHHHHHhhcHHHHHHHhcCCCccccchhhHHHHHhh-hHHhh
Q 036251 127 SSDQRLTIVGWICAVFSVCVFAAPLSIIRQVIRTKSVEYMPFSLSCCLTIC-AGMWL 182 (275)
Q Consensus 127 ~~~~~~~~lG~~a~v~si~~f~SPl~~i~~Virtkst~~~p~~~~~~~~~n-~~lW~ 182 (275)
+.+...+++|+.|.+.+-.|-+--=-.+++.+-+.|-++.+..++..+++| |..|+
T Consensus 127 DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~ 183 (290)
T KOG4314|consen 127 DNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISF 183 (290)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhh
Confidence 555778899999999998887777778899999999998887777777776 55554
No 33
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=49.53 E-value=2.7e+02 Score=28.25 Aligned_cols=77 Identities=12% Similarity=0.201 Sum_probs=39.8
Q ss_pred HHHhhcHHHHHHHhcCCCccccch-----hhHHHHHhhhHHhhhhhccc-------CCe---eEEechhHHHHHHHHHhh
Q 036251 145 CVFAAPLSIIRQVIRTKSVEYMPF-----SLSCCLTICAGMWLLYGLSI-------KDY---YIATPNILGMAFGATQMI 209 (275)
Q Consensus 145 ~~f~SPl~~i~~Virtkst~~~p~-----~~~~~~~~n~~lW~~YGll~-------~D~---~I~~~N~~G~~l~~~ql~ 209 (275)
..|.|--.++++..-+|+.--++. .....+.+.++.|..+.... +|| .+...--..+.+...-++
T Consensus 357 wIF~SL~~Tlk~Lr~rRn~vKl~lYr~F~n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~Wv~~a~W~~l~~~iLvvI 436 (518)
T KOG2568|consen 357 WIFISLAKTLKKLRLRRNIVKLSLYRKFTNTLAFSVVASFAFILVETIFYSIMSCNKDWKERWVDTAFWPLLFFLILVVI 436 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhccHHHHHHHHHHHH
Confidence 346666677777766676664332 23345566666666554432 343 222222334444444455
Q ss_pred heeEeecCCCcc
Q 036251 210 LYLAYRTRRNSE 221 (275)
Q Consensus 210 ly~~y~~~~~~~ 221 (275)
.+.|.|..++..
T Consensus 437 ~~LWrPS~nn~r 448 (518)
T KOG2568|consen 437 MFLWRPSQNNQR 448 (518)
T ss_pred HHhcCCCCCCcc
Confidence 556666555554
No 34
>COG3952 Predicted membrane protein [Function unknown]
Probab=49.22 E-value=10 Score=30.08 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=48.5
Q ss_pred hcCCCccccchhhHHHHHhhhHHhhhhhcccCCeeEEechhHHHHHHHHHhhheeEeecC
Q 036251 158 IRTKSVEYMPFSLSCCLTICAGMWLLYGLSIKDYYIATPNILGMAFGATQMILYLAYRTR 217 (275)
Q Consensus 158 irtkst~~~p~~~~~~~~~n~~lW~~YGll~~D~~I~~~N~~G~~l~~~ql~ly~~y~~~ 217 (275)
.+.++.+.+|.+.--++.+.+.+-+.|.+-++|..=+..|+.|+..++.-+-+...-++.
T Consensus 48 se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ker~~ 107 (113)
T COG3952 48 SEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLIIKERRW 107 (113)
T ss_pred HHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 345666678888888899999999999999999887788999999988887776554443
No 35
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=40.17 E-value=2e+02 Score=25.62 Aligned_cols=23 Identities=4% Similarity=0.052 Sum_probs=16.9
Q ss_pred HHHHHhhHHHHHHHHHHhhcHHH
Q 036251 131 RLTIVGWICAVFSVCVFAAPLSI 153 (275)
Q Consensus 131 ~~~~lG~~a~v~si~~f~SPl~~ 153 (275)
....+|+.+.+...++++.++..
T Consensus 96 lHSwlGl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 96 LHSWLGLTAVILFSLQWVGGFVS 118 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888777777777655
No 36
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=39.10 E-value=4.8e+02 Score=27.39 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHccHHHHHHHHHhccCCCC
Q 036251 12 FGLLGNIVSFLVYLAPLPTFYRIFKKKSTQGF 43 (275)
Q Consensus 12 ~~ilg~i~si~~~lSp~p~~~~I~k~kstg~~ 43 (275)
.+++|...+..+ -+|++..+..++..++-
T Consensus 219 ~~ilg~~lsa~~---llP~~~~~l~~~r~~~~ 247 (843)
T PF09586_consen 219 SSILGVGLSAFL---LLPTILSLLQSKRSGGS 247 (843)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHhCCCccCC
Confidence 344555555444 67999999988887764
No 37
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=38.99 E-value=2.6e+02 Score=24.32 Aligned_cols=42 Identities=10% Similarity=0.106 Sum_probs=32.4
Q ss_pred HhhcHHHHHHHhcCCCccccchhhHHHHHhhhHHhhhhhccc
Q 036251 147 FAAPLSIIRQVIRTKSVEYMPFSLSCCLTICAGMWLLYGLSI 188 (275)
Q Consensus 147 f~SPl~~i~~Virtkst~~~p~~~~~~~~~n~~lW~~YGll~ 188 (275)
-.+-+||+....|.+.+|++..--.+++.+--.+..-|.+..
T Consensus 129 SVAILPQL~mLq~~GeteslT~hYvfamgLYRalYip~wI~r 170 (214)
T COG5196 129 SVAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIPYWILR 170 (214)
T ss_pred HHHHHHHHHHHHhcCCcceeHHHHHHHHHHHHHhhhhHHHHH
Confidence 346689999999999999987766666666666777776664
No 38
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=35.63 E-value=4e+02 Score=25.40 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHccHHHHHHH-HHhccCCCCcchhHHHHHHHHHHHHHHhccccCC--------ceeEeehhhHHHHHH
Q 036251 13 GLLGNIVSFLVYLAPLPTFYRI-FKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSN--------AFMLITINGIGCIIE 83 (275)
Q Consensus 13 ~ilg~i~si~~~lSp~p~~~~I-~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~--------~~~vi~~N~~G~~l~ 83 (275)
.++=.++.+++.++-+-.+.|+ .|+|..--....-+.+..+...+|..+-... .+ ..|. ..-.+-..++
T Consensus 164 ~v~~lis~~~l~l~qvqiv~rlF~R~~eK~~i~~vG~~L~i~~~il~ai~~f~~-~~~~~~~~~~~lp~-~~yl~~ial~ 241 (348)
T PF08733_consen 164 RVIDLISNFFLQLAQVQIVIRLFPRQKEKRIIFWVGFILIILDQILWAINQFSY-FDSDPNSFLDILPA-FSYLFRIALS 241 (348)
T ss_pred eeHHHHHHHHHHHHHHHHHHHhhcccCcEEEEeeHHHHHHHHHHHHHHHHHhcc-CCCCccccccchHH-HHHHHHHHHH
Confidence 3445567777888888899999 5666555567778999999999999998644 21 1222 2355566666
Q ss_pred HHHHH--HHHHhccc
Q 036251 84 SLYLL--FFMIYATK 96 (275)
Q Consensus 84 ~~y~~--v~~~y~~~ 96 (275)
+.|.. +||.+.++
T Consensus 242 ~~ya~~v~~y~~~k~ 256 (348)
T PF08733_consen 242 TLYAAWVIYYIISKK 256 (348)
T ss_pred HHHHHHHHHHHHhhh
Confidence 66644 34444443
No 39
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=35.24 E-value=4.8e+02 Score=28.23 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=26.7
Q ss_pred cHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccccCCceeEeehhhHHHH
Q 036251 27 PLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSNAFMLITINGIGCI 81 (275)
Q Consensus 27 p~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~ 81 (275)
-+||.++-.|-. ..-..+.|++|.+|-.+.+..-|...++-.++++
T Consensus 73 ~Fpq~r~RfR~~---------L~YI~~~~l~W~lYfav~~rs~fi~~~~~slc~l 118 (1318)
T KOG3618|consen 73 CFPQTRRRFRYA---------LFYIGFACLLWSLYFAVHMRSRFIVMVAPSLCFL 118 (1318)
T ss_pred hCHHHHHHHHHH---------HHHHHHHHHHHHHHheeccCceeeeehHHHHHHH
Confidence 356766554421 2334567899999998763332555555555443
No 40
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=34.11 E-value=95 Score=28.41 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=28.4
Q ss_pred HhhhHHhhhhhccc---CCeeEEechhHHHHHHHHHhhheeEeecC
Q 036251 175 TICAGMWLLYGLSI---KDYYIATPNILGMAFGATQMILYLAYRTR 217 (275)
Q Consensus 175 ~~n~~lW~~YGll~---~D~~I~~~N~~G~~l~~~ql~ly~~y~~~ 217 (275)
.+.+-.|..||+.- ++..--.-|.+|+++.++-..+|..-.++
T Consensus 93 ~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 93 CLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred HHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 34444566677763 33445556999999999988888654433
No 41
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=31.42 E-value=1.2e+02 Score=29.82 Aligned_cols=68 Identities=22% Similarity=0.316 Sum_probs=50.1
Q ss_pred HHHHHHHHHccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHH
Q 036251 17 NIVSFLVYLAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESL 85 (275)
Q Consensus 17 ~i~si~~~lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~ 85 (275)
..=+++=||+-=-++.-++++||.+|+|.-..+.-+++.+.=++|=+=. +-.+.|...+++|++++++
T Consensus 307 ~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL~D~-~ts~lil~~~gig~~ie~W 374 (438)
T PF05602_consen 307 LLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYLLDN-ETSWLILVPSGIGLLIEAW 374 (438)
T ss_pred HHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeEEeC-CCcEEeehHhHhHHhHhhe
Confidence 3334445788888999999999999999777666666666655664433 2346799999999999864
No 42
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=30.52 E-value=3.6e+02 Score=26.72 Aligned_cols=10 Identities=0% Similarity=0.099 Sum_probs=5.3
Q ss_pred hHHhhhhhcc
Q 036251 178 AGMWLLYGLS 187 (275)
Q Consensus 178 ~~lW~~YGll 187 (275)
+++|..+++.
T Consensus 412 ~~~~~~~~~v 421 (507)
T TIGR00910 412 GFLLSIFAFF 421 (507)
T ss_pred HHHHHHHHHh
Confidence 4455555554
No 43
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=30.29 E-value=17 Score=33.99 Aligned_cols=73 Identities=8% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHhhcHHHHHHHhcCCCccccchhhHHHHHhhhHHhhhhhcc-cCCeeEEechhHHHHHHH
Q 036251 132 LTIVGWICAVFSVCVFAAPLSIIRQVIRTKSVEYMPFSLSCCLTICAGMWLLYGLS-IKDYYIATPNILGMAFGA 205 (275)
Q Consensus 132 ~~~lG~~a~v~si~~f~SPl~~i~~Virtkst~~~p~~~~~~~~~n~~lW~~YGll-~~D~~I~~~N~~G~~l~~ 205 (275)
..++|++--++.+.+.+.-+--+. ..|+--++.-.++.++..|+-.++-++-+++ ...||-+..-..=+++-+
T Consensus 104 ~LF~Gi~~l~l~~lLaL~vW~Ym~-lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFl 177 (381)
T PF05297_consen 104 TLFVGIVILFLCCLLALGVWFYMW-LLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFL 177 (381)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345665444333333222222222 3344333322333333334444445555554 456776666655554433
No 44
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=27.38 E-value=1.1e+02 Score=18.00 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=12.9
Q ss_pred HHccHHHHHHHHHhcc
Q 036251 24 YLAPLPTFYRIFKKKS 39 (275)
Q Consensus 24 ~lSp~p~~~~I~k~ks 39 (275)
..+.+|++..++|+|.
T Consensus 9 la~~LP~lISWIK~kr 24 (26)
T PF01372_consen 9 LATGLPTLISWIKNKR 24 (26)
T ss_dssp HHTHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHh
Confidence 3467899999999885
No 45
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=26.83 E-value=3e+02 Score=28.50 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHccHHHHHHHHHhccCCCCcchh-HHHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHHHH
Q 036251 13 GLLGNIVSFLVYLAPLPTFYRIFKKKSTQGFQSIP-YSVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESLYL 87 (275)
Q Consensus 13 ~ilg~i~si~~~lSp~p~~~~I~k~kstg~~s~lp-~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~y~ 87 (275)
-++|.+..+...+=-+-|....-|+|.+ .=|.. ....+.++.+-+.|+..+ +|+. .+...++|.++.+=-+
T Consensus 141 ~~~G~~~q~~f~~Rf~~Qw~~se~~~~s--~~p~~FW~~s~~G~~~~l~Y~i~r-~dpv-~i~g~~~g~~~y~rnl 212 (608)
T PRK01021 141 HLIGCIGLTIFSLRFFIQWFYLEYNNQS--ALPALFWKASLLGGSLALLYFIRT-GDPV-NILCYGCGLFPSLANL 212 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHhHHHHHHHHHHh-CCce-EEEccccchhHHHHHH
Confidence 3445555555444445555555555442 23333 456778889999999999 8874 5667899988865444
No 46
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=26.79 E-value=7.1e+02 Score=25.57 Aligned_cols=40 Identities=10% Similarity=0.409 Sum_probs=30.4
Q ss_pred HccHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhccccCCc
Q 036251 25 LAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASLKGSNA 69 (275)
Q Consensus 25 lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l~~~~~ 69 (275)
..|+-.+-+++-.=+-++++|.|+++.+ .++.+|++- +|.
T Consensus 326 ~~pFE~lv~mYg~P~Y~EiDPT~~~ai~----f~lfFGmM~-gD~ 365 (646)
T PRK05771 326 IKPFESLTEMYSLPKYNEIDPTPFLAIF----FPLFFGMML-GDA 365 (646)
T ss_pred hhhHHHHHHHcCCCCCCCcCCccHHHHH----HHHHHHHHH-HhH
Confidence 4566777777777777899999987654 578899988 774
No 47
>PLN02351 cytochromes b561 family protein
Probab=26.53 E-value=5e+02 Score=23.68 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=17.4
Q ss_pred HHHHHhhHHHHHHHHHHhhcHHHHH
Q 036251 131 RLTIVGWICAVFSVCVFAAPLSIIR 155 (275)
Q Consensus 131 ~~~~lG~~a~v~si~~f~SPl~~i~ 155 (275)
....+|+.+...-..+++.++..+.
T Consensus 119 LHSWlGl~tv~Lf~lQwv~Gf~~F~ 143 (242)
T PLN02351 119 LHSWMGLICVSLFGAQWLTGFMSFW 143 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788777777777777776653
No 48
>COG3952 Predicted membrane protein [Function unknown]
Probab=25.78 E-value=3.5e+02 Score=21.62 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=33.0
Q ss_pred cchhHH-HHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHHHHHHHHH
Q 036251 44 QSIPYS-VALFSAMLLLYYASLKGSNAFMLITINGIGCIIESLYLLFFMI 92 (275)
Q Consensus 44 s~lp~~-~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~y~~v~~~ 92 (275)
-|.+|+ +.+++..+-+.|-+.+ +|+. -+..|++|+..++.-+.+..+
T Consensus 56 ~P~~FW~~sllGg~l~L~Yfi~~-~DpV-~Vl~~~~glF~~l~nL~L~~k 103 (113)
T COG3952 56 IPVLFWYFSLLGGLLLLSYFIRR-QDPV-FVLGQACGLFIYLRNLWLIIK 103 (113)
T ss_pred chHHHHHHHHHhhHHHHHHHHHh-cchH-HHHHHhhhHHHHHHHHHHHHH
Confidence 344444 5678888999999999 8863 345788888887766555443
No 49
>PRK11387 S-methylmethionine transporter; Provisional
Probab=25.35 E-value=3.6e+02 Score=26.20 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=7.2
Q ss_pred HHHHccHHHHHHHHHh
Q 036251 22 LVYLAPLPTFYRIFKK 37 (275)
Q Consensus 22 ~~~lSp~p~~~~I~k~ 37 (275)
..++...-...+.+|+
T Consensus 377 i~y~~~~~~~i~lr~~ 392 (471)
T PRK11387 377 AVWLSICASHFMFRRR 392 (471)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 50
>PHA03049 IMV membrane protein; Provisional
Probab=24.37 E-value=19 Score=26.15 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhheeEeecCCCccccc
Q 036251 199 LGMAFGATQMILYLAYRTRRNSEILP 224 (275)
Q Consensus 199 ~G~~l~~~ql~ly~~y~~~~~~~~~~ 224 (275)
++++..++-+++|.+|.+++.....+
T Consensus 8 ~iICVaIi~lIvYgiYnkk~~~q~~~ 33 (68)
T PHA03049 8 VIICVVIIGLIVYGIYNKKTTTSQNP 33 (68)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCC
Confidence 55667778889999999887776554
No 51
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=23.90 E-value=2e+02 Score=28.22 Aligned_cols=67 Identities=22% Similarity=0.175 Sum_probs=53.3
Q ss_pred HHHHHhhcHHHHHHHhcCCCccccchhhHHHHHhhhHHhhhhhcccC-CeeEEechhHHHHHHHHHhh
Q 036251 143 SVCVFAAPLSIIRQVIRTKSVEYMPFSLSCCLTICAGMWLLYGLSIK-DYYIATPNILGMAFGATQMI 209 (275)
Q Consensus 143 si~~f~SPl~~i~~Virtkst~~~p~~~~~~~~~n~~lW~~YGll~~-D~~I~~~N~~G~~l~~~ql~ 209 (275)
+++-|+|.=.++.--.++||.+++|..-.+..+++.++=++|=+--+ .+.|.+++++|+++.+.=+.
T Consensus 310 ~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL~D~~ts~lil~~~gig~~ie~WKv~ 377 (438)
T PF05602_consen 310 SVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYLLDNETSWLILVPSGIGLLIEAWKVT 377 (438)
T ss_pred HHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeEEeCCCcEEeehHhHhHHhHhheeee
Confidence 34557888888888999999999999999888888877777755432 37799999999999875443
No 52
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=23.83 E-value=2.3e+02 Score=23.99 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhccCCCCc
Q 036251 9 VIIFGLLGNIVSFLVYLAPLPTFYRIFKKKSTQGFQ 44 (275)
Q Consensus 9 ~~i~~ilg~i~si~~~lSp~p~~~~I~k~kstg~~s 44 (275)
..+.|++|.++.+++ |++++-+|+++..+++
T Consensus 33 ~~~~g~~~~~~gF~~-----Pt~y~~yk~~~~~gv~ 63 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFA-----PTAYYRYKTGAIKGVP 63 (152)
T ss_pred HHHHHHHHHHHHHhh-----HHHHHHHhcccccCCc
Confidence 466777787777776 9999999888876654
No 53
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=23.78 E-value=1.4e+02 Score=28.34 Aligned_cols=52 Identities=17% Similarity=0.108 Sum_probs=37.0
Q ss_pred cchhHHHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHHHHHHHHHhcccc
Q 036251 44 QSIPYSVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESLYLLFFMIYATKT 97 (275)
Q Consensus 44 s~lp~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~y~~v~~~y~~~k 97 (275)
+.+|-.+...-++.|-.|.... +. +.++.+|.+|..++..-++.++.+++.+
T Consensus 242 aLvPPa~~~Gi~la~g~~~~a~-ga-~~L~~~Nl~~I~la~~~vf~~~g~~p~~ 293 (325)
T TIGR00341 242 SLLPPAVATGILLVISPLPLAV-KS-LILTLINVAGLMAGSLAGVYVYGIRAYR 293 (325)
T ss_pred HhhchHHHHHHHHHhccHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 4566666666667777766666 44 4588899999999987777766666643
No 54
>PF15102 TMEM154: TMEM154 protein family
Probab=23.77 E-value=1.8e+02 Score=24.52 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=18.0
Q ss_pred eEEechhHHHHHHHHHhhheeEeecCCCc
Q 036251 192 YIATPNILGMAFGATQMILYLAYRTRRNS 220 (275)
Q Consensus 192 ~I~~~N~~G~~l~~~ql~ly~~y~~~~~~ 220 (275)
.|++|-++++++-+.-+++.++|+|+|.+
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred EEeHHHHHHHHHHHHHHHheeEEeecccC
Confidence 46778777766655556666666554443
No 55
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=23.20 E-value=4.4e+02 Score=21.92 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=20.2
Q ss_pred HHccHHHHHHHHHhccCCCCcchhHHHH
Q 036251 24 YLAPLPTFYRIFKKKSTQGFQSIPYSVA 51 (275)
Q Consensus 24 ~lSp~p~~~~I~k~kstg~~s~lp~~~~ 51 (275)
+.+|..++.+++|++.+.....+-.+..
T Consensus 2 l~~P~~~w~~i~~~~~~~~~~~~~~~l~ 29 (170)
T PF06930_consen 2 LTSPSDEWERIKREHESSWALYLVHVLL 29 (170)
T ss_pred cCChHHHHHHHHHcCCchhHHHHHHHHH
Confidence 4589999999999988876554443333
No 56
>TIGR00271 uncharacterized hydrophobic domain. This domain is in a family of archaeal proteins that includes AF0785 of Archaeoglobus fulgidus and in several eubacterial proteins, including the much longer protein sll1151 from Synechocystis PCC6803.
Probab=22.68 E-value=5e+02 Score=22.36 Aligned_cols=156 Identities=13% Similarity=0.048 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHHhccccCCceeEeehhhHHHHHHHHHHHHHHHhcccchhHHH-HHHHHHHHHHHHHHHHHhhhhee
Q 036251 47 PYSVALFSAMLLLYYASLKGSNAFMLITINGIGCIIESLYLLFFMIYATKTAKIYT-TKLLILFNIGALGLIVLLTYLLS 125 (275)
Q Consensus 47 p~~~~~~n~~lW~~YG~l~~~~~~~vi~~N~~G~~l~~~y~~v~~~y~~~k~r~~~-~~~~~~~~~~~~~~i~~~~~~~~ 125 (275)
.|..+...+..=-.+|++. |+.-.++..=.++=+++-+.-..+-.-..|++..++ .+.........+..-.++..+..
T Consensus 6 ~y~~ll~lA~iIA~iGL~~-nS~avIIGAMlIaPLmgPi~a~a~g~~~gd~~L~~~s~~~l~~~~~~~~~~a~~~g~~~p 84 (175)
T TIGR00271 6 TYIIFVILATIIAACGLVL-DNAVLIIGAMIIAPLLGPIAGSAVGLVVGDVKLALRSAKNLLLAMAFVIVFAMIMGLFHP 84 (175)
T ss_pred HHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHhHhHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3677777777888899998 775334444444444454444444444344332211 11111100000110111122211
Q ss_pred --cCchhHH--HHHhhHHHHHHHHHHhhcHHHHHHHhcCCCcc------ccchhhHHHHHhhhHHhhhhhcccCCeeEEe
Q 036251 126 --KSSDQRL--TIVGWICAVFSVCVFAAPLSIIRQVIRTKSVE------YMPFSLSCCLTICAGMWLLYGLSIKDYYIAT 195 (275)
Q Consensus 126 --~~~~~~~--~~lG~~a~v~si~~f~SPl~~i~~Virtkst~------~~p~~~~~~~~~n~~lW~~YGll~~D~~I~~ 195 (275)
...++.. ..-+....+.. .++.......+.|+++.. .....|..+..--+..|--|....+-...+.
T Consensus 85 ~~~~~~ei~~R~~p~~~dl~vA---l~aG~Agala~~~~~~~~lvGVaIAvaLvPP~~~~Gi~la~g~~~~a~ga~~L~~ 161 (175)
T TIGR00271 85 SKLTVPQILSRTSPDFLSLIVA---VLAGIAGSLSLTSGKSGSLVGVAISVSLLPPAAVAGVALGIGDLLQSYSSLILLL 161 (175)
T ss_pred CCCCChhHHhhcCCchHHHHHH---HHHHHHHHHHHhcccccchHHHHHHHHhhcHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1111111 11122222222 234444444444555543 1233333444444555555555556667888
Q ss_pred chhHHHHHHHH
Q 036251 196 PNILGMAFGAT 206 (275)
Q Consensus 196 ~N~~G~~l~~~ 206 (275)
.|.+|+.++..
T Consensus 162 ~N~v~I~la~~ 172 (175)
T TIGR00271 162 INLVAIDVGGT 172 (175)
T ss_pred HHHHHHHHHHH
Confidence 89999887654
No 57
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=22.48 E-value=4.7e+02 Score=21.95 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.8
Q ss_pred CcchhHHHHHHHHHHHHHHhccc
Q 036251 43 FQSIPYSVALFSAMLLLYYASLK 65 (275)
Q Consensus 43 ~s~lp~~~~~~n~~lW~~YG~l~ 65 (275)
.+...++++++.+..-...+...
T Consensus 90 l~~~~~~~g~~~~~gl~~~a~~~ 112 (215)
T PF10277_consen 90 LNILSLVFGLLSAIGLILLAIFQ 112 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Confidence 77888888999999988888876
No 58
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=21.61 E-value=7.2e+02 Score=25.16 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=31.5
Q ss_pred cHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHhcc--ccCCceeEeehhhHHHHHHHHHHHHHHHhcc
Q 036251 27 PLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLYYASL--KGSNAFMLITINGIGCIIESLYLLFFMIYAT 95 (275)
Q Consensus 27 p~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW~~YG~l--~~~~~~~vi~~N~~G~~l~~~y~~v~~~y~~ 95 (275)
-+-+.|+|.+++=- .+.-.+.+ .+-+--|++ + +|+ +..+|.+.+++..++++-|-+
T Consensus 531 El~qs~~il~~~w~---a~~~Lia~----~L~L~iGliPWi-DN~-----aHlfG~i~GLl~s~~~~PYi~ 588 (652)
T KOG2290|consen 531 ELFQSWQILERPWR---AFFHLIAT----LLVLCIGLIPWI-DNW-----AHLFGTIFGLLTSIIFLPYID 588 (652)
T ss_pred HHHhhhHhhhhHHH---HHHHHHHH----HHHHHhccccch-hhH-----HHHHHHHHHHHHHHHhhcccc
Confidence 55678888887321 11112222 222222653 3 453 678888888888888777743
No 59
>PRK10580 proY putative proline-specific permease; Provisional
Probab=21.17 E-value=6.1e+02 Score=24.47 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=10.7
Q ss_pred HHHHHHHccHHHHHHHHHhc
Q 036251 19 VSFLVYLAPLPTFYRIFKKK 38 (275)
Q Consensus 19 ~si~~~lSp~p~~~~I~k~k 38 (275)
..+..+..+.....+.+|++
T Consensus 367 ~~~~~y~~~~~~~~~lr~~~ 386 (457)
T PRK10580 367 ATVWVWIMILLSQIAFRRRL 386 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666665553
Done!