Query 036251
Match_columns 275
No_of_seqs 211 out of 1479
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 18:43:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 50.9 29 0.00099 32.2 6.7 26 133-158 368-393 (511)
2 3l1l_A Arginine/agmatine antip 13.1 3.8E+02 0.013 23.8 6.6 28 135-162 353-380 (445)
3 3pvi_A Protein (pvuii endonucl 11.2 1.2E+02 0.0041 24.1 2.1 15 254-268 60-74 (157)
4 3qrx_B Melittin; calcium-bindi 9.2 1.8E+02 0.0063 16.1 1.8 15 25-39 10-24 (26)
5 2k9p_A Pheromone alpha factor 8.1 4.3E+02 0.015 18.7 4.0 13 72-84 50-62 (80)
6 3dh4_A Sodium/glucose cotransp 7.6 1.3E+03 0.043 21.5 8.4 36 172-210 432-467 (530)
7 2lai_A Avirulence protein ATR1 7.0 4.4E+02 0.015 19.1 3.5 32 232-263 22-54 (101)
8 4gc0_A D-xylose-proton symport 6.1 1.1E+03 0.037 20.5 6.7 11 210-220 459-469 (491)
9 2kdx_A HYPA, hydrogenase/ureas 5.1 3.2E+02 0.011 20.3 2.0 27 244-270 92-118 (119)
10 3ksk_A Type-2 restriction enzy 5.0 3.2E+02 0.011 24.0 2.1 16 254-269 59-74 (324)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=50.85 E-value=29 Score=32.17 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=12.1
Q ss_pred HHHhhHHHHHHHHHHhhcHHHHHHHh
Q 036251 133 TIVGWICAVFSVCVFAAPLSIIRQVI 158 (275)
Q Consensus 133 ~~lG~~a~v~si~~f~SPl~~i~~Vi 158 (275)
+.+..++++.....|..+...+.+..
T Consensus 368 ~~l~~~~~~~~~~~y~~~~~~~~~~r 393 (511)
T 4djk_A 368 LIALALTVVIYLCAYFMLFIGYIVLV 393 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555554433333
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=13.10 E-value=3.8e+02 Score=23.76 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=13.7
Q ss_pred HhhHHHHHHHHHHhhcHHHHHHHhcCCC
Q 036251 135 VGWICAVFSVCVFAAPLSIIRQVIRTKS 162 (275)
Q Consensus 135 lG~~a~v~si~~f~SPl~~i~~Virtks 162 (275)
+..+++......|..+.....+..|++.
T Consensus 353 l~~~~~~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 353 VSSVSVIFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 3334444444555555555555555443
No 3
>3pvi_A Protein (pvuii endonuclease); complex (restriction endonuclease/DNA), mutant, protein/DNA, hydrolase/DNA complex; HET: DNA; 1.59A {Proteus vulgaris} SCOP: c.52.1.6 PDB: 1eyu_A* 1f0o_A 1pvi_A* 1ni0_A 1k0z_A 1h56_A 1pvu_A 2pvi_A*
Probab=11.19 E-value=1.2e+02 Score=24.08 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=13.3
Q ss_pred cccCCCeeEEEEEee
Q 036251 254 HDSSNGEVEIKAVET 268 (275)
Q Consensus 254 ~~~~~~~~~~~~~~~ 268 (275)
++++++|-|+|.|.-
T Consensus 60 vd~~G~E~ElKSvNi 74 (157)
T 3pvi_A 60 VDNAGQEYELKSINI 74 (157)
T ss_dssp ECTTCCEEEEEEEET
T ss_pred cccCCCEEEeeeeee
Confidence 788999999999964
No 4
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=9.23 E-value=1.8e+02 Score=16.13 Aligned_cols=15 Identities=27% Similarity=0.425 Sum_probs=12.2
Q ss_pred HccHHHHHHHHHhcc
Q 036251 25 LAPLPTFYRIFKKKS 39 (275)
Q Consensus 25 lSp~p~~~~I~k~ks 39 (275)
...+|.+..++|+|.
T Consensus 10 a~~LP~liSWiK~kr 24 (26)
T 3qrx_B 10 TTGLPALISWIKRKR 24 (26)
T ss_pred HccchHHHHHHHHHh
Confidence 357799999999885
No 5
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=8.14 E-value=4.3e+02 Score=18.72 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=5.0
Q ss_pred EeehhhHHHHHHH
Q 036251 72 LITINGIGCIIES 84 (275)
Q Consensus 72 vi~~N~~G~~l~~ 84 (275)
++..|...+++.+
T Consensus 50 iF~lN~~~L~l~i 62 (80)
T 2k9p_A 50 IFIINQVSLFLII 62 (80)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 3333333333333
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=7.63 E-value=1.3e+03 Score=21.47 Aligned_cols=36 Identities=6% Similarity=-0.043 Sum_probs=17.5
Q ss_pred HHHHhhhHHhhhhhcccCCeeEEechhHHHHHHHHHhhh
Q 036251 172 CCLTICAGMWLLYGLSIKDYYIATPNILGMAFGATQMIL 210 (275)
Q Consensus 172 ~~~~~n~~lW~~YGll~~D~~I~~~N~~G~~l~~~ql~l 210 (275)
+.+++....|..+. .|..-.-+..+|++++++-..+
T Consensus 432 i~G~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~v~ 467 (530)
T 3dh4_A 432 VASIPFALFLKFMP---LSMPFMDQMLYTLLFTMVVIAF 467 (530)
T ss_dssp HHHHHHHHHHHTSS---SCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCccHHHHHHHHHHHHHHHHHH
Confidence 33444444443322 2433344566777776655443
No 7
>2lai_A Avirulence protein ATR13; nucleolar localization, signaling protein; NMR {Hyaloperonospora parasitica}
Probab=6.99 E-value=4.4e+02 Score=19.08 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=19.1
Q ss_pred CCCcccc-cccCcCCCccccccccccCCCeeEE
Q 036251 232 PKDREES-NNTGAADPCCNHHHRHDSSNGEVEI 263 (275)
Q Consensus 232 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (275)
.+|.|.+ +...--.-.-+++..|+|+++++-+
T Consensus 22 ~kpietsysakgih~kii~ahd~hvsks~~api 54 (101)
T 2lai_A 22 GKPIETSYSAKGIHEKIIEAHDLHVSKSKNAPI 54 (101)
T ss_dssp SSCSSSGGGSSCSSSSTTTSSCCSSSCCSSCCC
T ss_pred CCCcccchhhccHHHHHHHHHHhhhccccccch
Confidence 4555554 2222333344577788999888765
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=6.09 E-value=1.1e+03 Score=20.52 Aligned_cols=11 Identities=0% Similarity=0.105 Sum_probs=4.7
Q ss_pred heeEeecCCCc
Q 036251 210 LYLAYRTRRNS 220 (275)
Q Consensus 210 ly~~y~~~~~~ 220 (275)
.|+..|..|.+
T Consensus 459 ~~~~~PETkg~ 469 (491)
T 4gc0_A 459 MWKFVPETKGK 469 (491)
T ss_dssp HHHHCCCCTTC
T ss_pred HHheecCCCCC
Confidence 34444544443
No 9
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=5.12 E-value=3.2e+02 Score=20.34 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=22.0
Q ss_pred CCCccccccccccCCCeeEEEEEeecc
Q 036251 244 ADPCCNHHHRHDSSNGEVEIKAVETNQ 270 (275)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (275)
.=|.|........++.|..||.+|-.|
T Consensus 92 ~CP~Cgs~~~~i~~G~el~i~~ie~e~ 118 (119)
T 2kdx_A 92 VCEKCHSKNVIITQGNEMRLLSLEMLA 118 (119)
T ss_dssp CCSSSSSCCCEEEESSCCEEEEEECCC
T ss_pred cCccccCCCcEEecCCeEEEEEEEEEe
Confidence 457788777788899999999998654
No 10
>3ksk_A Type-2 restriction enzyme pvuii; single chain restriction endonuclease, DNA-binding protein, endonuclease, hydrolase, magnesium, metal-binding; 2.35A {Proteus vulgaris}
Probab=5.04 E-value=3.2e+02 Score=24.01 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.6
Q ss_pred cccCCCeeEEEEEeec
Q 036251 254 HDSSNGEVEIKAVETN 269 (275)
Q Consensus 254 ~~~~~~~~~~~~~~~~ 269 (275)
++++++|-|+|.|.-+
T Consensus 59 vd~~G~E~ElKSvNie 74 (324)
T 3ksk_A 59 VDNAGQEYELKSINID 74 (324)
T ss_dssp ECTTSCEEEEEEEETT
T ss_pred cccCCCEEEeeeeeee
Confidence 7889999999999643
Done!