Query 036251
Match_columns 275
No_of_seqs 211 out of 1479
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 18:43:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036251.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036251hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3pvia_ c.52.1.6 (A:) Restrict 16.6 30 0.0022 25.5 2.0 16 254-269 59-74 (156)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 9.3 90 0.0065 16.4 1.9 17 76-92 8-24 (30)
3 d1vf5c3 f.23.23.1 (C:250-286) 7.2 2.1E+02 0.016 15.9 4.5 30 10-44 5-34 (37)
4 d1rh5b_ f.23.28.1 (B:) Preprot 5.9 1.7E+02 0.012 18.0 2.3 21 10-32 35-55 (56)
5 d1ppjc1 f.32.1.1 (C:261-379) M 5.1 4.2E+02 0.031 18.2 4.6 37 118-154 73-111 (119)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 4.5 4E+02 0.029 17.4 4.2 25 9-38 7-31 (158)
7 d1xmea1 f.24.1.1 (A:14-562) Ba 4.5 9.5E+02 0.069 20.5 7.8 34 25-58 147-180 (549)
8 d2axtm1 f.23.35.1 (M:1-36) Pho 4.5 1.7E+02 0.012 16.2 1.4 14 75-88 3-16 (36)
9 d1hn6a_ g.61.1.1 (A:) Apical m 4.4 84 0.0061 21.8 0.0 13 253-265 79-91 (110)
10 d3cx5c1 f.32.1.1 (C:262-385) M 4.3 5.2E+02 0.038 17.7 4.7 32 118-149 73-104 (124)
No 1
>d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus vulgaris [TaxId: 585]}
Probab=16.63 E-value=30 Score=25.49 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=14.0
Q ss_pred cccCCCeeEEEEEeec
Q 036251 254 HDSSNGEVEIKAVETN 269 (275)
Q Consensus 254 ~~~~~~~~~~~~~~~~ 269 (275)
+++.+||-|+|.|.-+
T Consensus 59 vD~~GnEyElKsvNi~ 74 (156)
T d3pvia_ 59 VDNAGQEYELKSINID 74 (156)
T ss_dssp ECTTCCEEEEEEEETT
T ss_pred cccCCCEEEEeEeeee
Confidence 8899999999999643
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.30 E-value=90 Score=16.40 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 036251 76 NGIGCIIESLYLLFFMI 92 (275)
Q Consensus 76 N~~G~~l~~~y~~v~~~ 92 (275)
-++.+++++++..+|++
T Consensus 8 ~ifac~i~lfffaiffr 24 (30)
T d2axtt1 8 FIFACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 35566666666666654
No 3
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.20 E-value=2.1e+02 Score=15.94 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHhccCCCCc
Q 036251 10 IIFGLLGNIVSFLVYLAPLPTFYRIFKKKSTQGFQ 44 (275)
Q Consensus 10 ~i~~ilg~i~si~~~lSp~p~~~~I~k~kstg~~s 44 (275)
.+-|.++..+++.+ -|+.-+.|+|-.+.+.
T Consensus 5 Rv~gl~~F~~~v~l-----aQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 5 RVKWMIAFICLVML-----AQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 35566666666665 7888899999988875
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.86 E-value=1.7e+02 Score=17.99 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHccHHHHH
Q 036251 10 IIFGLLGNIVSFLVYLAPLPTFY 32 (275)
Q Consensus 10 ~i~~ilg~i~si~~~lSp~p~~~ 32 (275)
.++|++|.+.-+.+ .|+|.+.
T Consensus 35 ~i~G~IGf~I~li~--~~i~~ii 55 (56)
T d1rh5b_ 35 SLLGIIGYIIHVPA--TYIKGIL 55 (56)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHhhhhc
Confidence 35677777777666 5666553
No 5
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.11 E-value=4.2e+02 Score=18.17 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=23.5
Q ss_pred HHhhhheecCchhHHHHHhhHHHHHHHHHHh--hcHHHH
Q 036251 118 VLLTYLLSKSSDQRLTIVGWICAVFSVCVFA--APLSII 154 (275)
Q Consensus 118 ~~~~~~~~~~~~~~~~~lG~~a~v~si~~f~--SPl~~i 154 (275)
++++....++.+..-..+|.++++.=.+.++ -|+.+.
T Consensus 73 i~L~wlG~~p~e~p~~~~gqi~tv~YF~~flillP~~~~ 111 (119)
T d1ppjc1 73 LTLTWIGGQPVEHPYITIGQLASVLYFLLILVLMPTAGT 111 (119)
T ss_dssp HHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666677789888888765543 555443
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=4.51 E-value=4e+02 Score=17.37 Aligned_cols=25 Identities=12% Similarity=0.449 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhc
Q 036251 9 VIIFGLLGNIVSFLVYLAPLPTFYRIFKKK 38 (275)
Q Consensus 9 ~~i~~ilg~i~si~~~lSp~p~~~~I~k~k 38 (275)
.-++-|+|..+++.+ |.+.+.+++.
T Consensus 7 lVViaIIgILaaia~-----P~~~~~~~~a 31 (158)
T d2pila_ 7 MIVIAIVGILAAVAL-----PAYQDYTARA 31 (158)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 345566666666665 7776666553
No 7
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=4.49 E-value=9.5e+02 Score=20.52 Aligned_cols=34 Identities=9% Similarity=0.129 Sum_probs=23.9
Q ss_pred HccHHHHHHHHHhccCCCCcchhHHHHHHHHHHH
Q 036251 25 LAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLL 58 (275)
Q Consensus 25 lSp~p~~~~I~k~kstg~~s~lp~~~~~~n~~lW 58 (275)
..-+-++.+.+|++..++..++..+..+....+|
T Consensus 147 i~~~~t~~~~r~~~~~~~~~Pl~~~~~~~~~~l~ 180 (549)
T d1xmea1 147 IYIVLDLWRRWKAANPGKVTPLVTYMAVVFWLMW 180 (549)
T ss_dssp HHHHHHHHHHHHHSSTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCcccchHHHHHHHHHHHHH
Confidence 3445667777888888877777777766666665
No 8
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.47 E-value=1.7e+02 Score=16.22 Aligned_cols=14 Identities=36% Similarity=0.783 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHHH
Q 036251 75 INGIGCIIESLYLL 88 (275)
Q Consensus 75 ~N~~G~~l~~~y~~ 88 (275)
+|..|.+....|++
T Consensus 3 vN~Lg~iAt~LFil 16 (36)
T d2axtm1 3 VNQLGLIATALFVL 16 (36)
T ss_dssp CCTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 45555555554443
No 9
>d1hn6a_ g.61.1.1 (A:) Apical membrane antigen 1 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=4.38 E-value=84 Score=21.81 Aligned_cols=13 Identities=38% Similarity=0.417 Sum_probs=10.2
Q ss_pred ccccCCCeeEEEE
Q 036251 253 RHDSSNGEVEIKA 265 (275)
Q Consensus 253 ~~~~~~~~~~~~~ 265 (275)
.-..+||||+||-
T Consensus 79 ~~I~eNNeV~IKE 91 (110)
T d1hn6a_ 79 AEVTSNNEVVVKE 91 (110)
T ss_dssp CCCCCCSSCCCCC
T ss_pred HHhhhCCeeEehH
Confidence 3467899999985
No 10
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.30 E-value=5.2e+02 Score=17.68 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=21.9
Q ss_pred HHhhhheecCchhHHHHHhhHHHHHHHHHHhh
Q 036251 118 VLLTYLLSKSSDQRLTIVGWICAVFSVCVFAA 149 (275)
Q Consensus 118 ~~~~~~~~~~~~~~~~~lG~~a~v~si~~f~S 149 (275)
++++....++.+.--..+|.++++.-.+.|.-
T Consensus 73 i~LtwlG~~p~e~p~~~~gqi~s~~YF~~Fli 104 (124)
T d3cx5c1 73 VLLGQIGACHVEVPYVLMGQIATFIYFAYFLI 104 (124)
T ss_dssp HHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 34555555666677788898888887776643
Done!