Query 036252
Match_columns 318
No_of_seqs 276 out of 1504
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 18:44:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_s 60S acidic ribosomal pr 100.0 3.5E-98 1E-102 708.2 17.5 318 1-318 1-319 (319)
2 3u5i_q A0, L10E, 60S acidic ri 100.0 2.1E-97 7E-102 701.1 13.1 312 4-318 1-312 (312)
3 2zkr_g 60S acidic ribosomal pr 100.0 1.1E-95 4E-100 690.6 -2.5 315 1-318 1-317 (317)
4 3j21_k Acidic ribosomal protei 100.0 1.3E-82 4.5E-87 607.4 14.9 269 4-274 1-271 (339)
5 1vq8_G Acidic ribosomal protei 100.0 6.3E-78 2.2E-82 574.4 3.4 267 4-277 9-276 (348)
6 3a1y_G Acidic ribosomal protei 100.0 6.7E-72 2.3E-76 522.9 13.1 267 5-273 2-270 (284)
7 3jsy_A Acidic ribosomal protei 100.0 4.2E-67 1.4E-71 471.3 14.4 210 8-217 2-212 (213)
8 2j01_J 50S ribosomal protein L 99.9 4.5E-22 1.5E-26 173.2 10.3 95 7-110 2-98 (173)
9 1zav_A 50S ribosomal protein L 99.9 9.5E-22 3.3E-26 172.1 10.8 98 6-110 3-105 (180)
10 3sgf_H 50S ribosomal protein L 99.8 1.5E-22 5.2E-27 174.8 -1.1 100 4-110 1-101 (165)
11 3iz5_t 60S acidic ribosomal pr 99.7 7.9E-18 2.7E-22 135.1 3.3 86 207-318 20-110 (110)
12 3izc_t 60S acidic ribosomal pr 99.7 1.4E-17 4.8E-22 132.9 2.8 86 207-318 19-106 (106)
13 3izc_v 60S acidic ribosomal pr 99.6 6.8E-17 2.3E-21 128.9 1.5 84 208-318 16-106 (106)
14 3iz5_v 60S acidic ribosomal pr 99.6 1.7E-16 5.7E-21 127.9 1.6 85 208-318 17-113 (113)
15 3j21_k Acidic ribosomal protei 99.3 6.4E-13 2.2E-17 126.6 3.1 227 13-258 36-283 (339)
16 1vq8_G Acidic ribosomal protei 99.0 2.3E-11 7.8E-16 115.9 0.0 166 95-272 132-299 (348)
17 3u5i_q A0, L10E, 60S acidic ri 98.9 2.7E-10 9.1E-15 107.2 0.2 208 12-239 35-260 (312)
18 3iz5_s 60S acidic ribosomal pr 98.8 1.4E-09 4.6E-14 102.7 2.1 213 12-245 38-273 (319)
19 2zkr_g 60S acidic ribosomal pr 98.7 1.8E-09 6E-14 101.9 1.0 203 13-235 38-258 (317)
20 3a1y_G Acidic ribosomal protei 98.7 2.4E-08 8.3E-13 92.9 7.7 230 12-258 35-283 (284)
21 2lbf_A 60S acidic ribosomal pr 96.6 0.00089 3E-08 48.9 2.1 46 208-279 22-67 (69)
22 3a1y_A 50S ribosomal protein P 92.9 0.041 1.4E-06 38.6 1.7 41 208-274 16-56 (58)
23 2lbf_B 60S acidic ribosomal pr 91.4 0.16 5.5E-06 37.0 3.5 43 208-276 18-60 (70)
24 3jsy_A Acidic ribosomal protei 91.2 0.32 1.1E-05 42.8 5.9 152 12-176 32-203 (213)
25 1d7q_A Translation initiation 33.4 13 0.00045 30.5 1.0 51 146-197 60-121 (143)
26 1xao_A YDJ1, mitochondrial pro 27.6 68 0.0023 24.9 4.3 58 122-183 36-97 (121)
27 3i38_A Putative chaperone DNAJ 26.1 52 0.0018 25.2 3.3 55 121-181 39-93 (109)
28 3rht_A (gatase1)-like protein; 25.2 62 0.0021 28.8 4.1 38 20-57 46-85 (259)
29 3gdw_A Sigma-54 interaction do 22.0 1.1E+02 0.0039 24.3 4.8 51 13-64 46-102 (139)
No 1
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=100.00 E-value=3.5e-98 Score=708.24 Aligned_cols=318 Identities=74% Similarity=1.136 Sum_probs=256.6
Q ss_pred CCcccccHHHHHHHHHHHHHHHhccCeEEEEEecCCCchHHHHHHHHccCCcEEEEEehHHHHHHHHhhhhhhCCccccc
Q 036252 1 MATRLSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMKRSIRLHAERTGNRDLLN 80 (318)
Q Consensus 1 ~~~~~~~~e~K~~~v~~l~e~l~~y~~v~iv~~~~v~s~ql~~iR~~lr~~~~~~vgKNtL~~~Al~~~~~~~~~~~~~~ 80 (318)
|..+..+|+||+++|++|+++|++|+++||++|+||+++|+|+||+.||++++|+||||||||+||+++.++++.+++++
T Consensus 1 m~~~~~~~e~K~~~v~el~e~l~~y~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~e~~~~~~le~ 80 (319)
T 3iz5_s 1 MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLE 80 (319)
T ss_dssp CCCCSSSCCCSSHHHHHHHHHHHHCSEEEEEECTTSCHHHHHHHHHHHHHHSCEECCSTTTCCHHHHHHHSSSCCSSSSS
T ss_pred CCCccchHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCcEEEEEhHHHHHHHHhhchhhhccccHHH
Confidence 55467899999999999999999999999999999999999999999997789999999999999999987777778999
Q ss_pred ccccccCceEEEEecCChhhHHHHHHhccccccccCCCccCceEEeCCCCCCCCCCchhhhhhcCCceEEecceeEeecC
Q 036252 81 LIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP 160 (318)
Q Consensus 81 L~~~l~G~~gliFt~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d 160 (318)
|.++|+|||||+|||+||.+++++|.+|++++|||+|+|||+||+||+|+|+|+|+++++||+|||||+|++|+|+|.+|
T Consensus 81 L~~~L~G~~gl~FT~~dp~~v~k~l~~~k~~~pAr~GaiAp~dV~VpaG~tg~~P~~~s~fq~LgiptkI~kG~I~I~~d 160 (319)
T 3iz5_s 81 LMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP 160 (319)
T ss_dssp SSCCCCTTEEEEEESSCHHHHHHHHHHSCEEECCCTTCBCSSCEEECCEECCCCSSCTHHHHHHTCCEEEETTEEEECSC
T ss_pred HHHHhcCCeEEEEECCChHHHHHHHHHccccccccCCCcCCceEEECCCCCCCCCcchHHHHHcCCceEEecCeEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCcccCcchHHHHhhcCCCccccccceeeeeeCCcccCCccccCChHHHHHHHHHHHHHHHHHhhhcCcccCCCC
Q 036252 161 VELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAA 240 (318)
Q Consensus 161 ~~v~~~G~~v~~~~A~lL~~L~i~p~~~~l~l~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~lsl~ag~pt~~s~ 240 (318)
++||++||+|+++||+||++|||+|++|+|.|+++|++|.+|++++|+||+|+|+++|.+|++++++||+++||||++++
T Consensus 161 ~~v~k~G~~v~~~~A~lL~~l~i~p~~f~l~l~~~~d~g~i~~~~vL~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~ 240 (319)
T 3iz5_s 161 VELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAA 240 (319)
T ss_dssp EEEECTTSBCCHHHHHHHHHHTCCCEEESCEEEEEEETTEEECHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTCCSTTTH
T ss_pred eEEEecCCCcCHHHHHHHHHhCCCceEEEeeeeEEEeCCceeCHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhhhhhhccccccchhcHHHHhcCcchhhhhccchhhhccC-ChhhhhhhhccCCccccccccCCCCCC
Q 036252 241 PHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFAAAAAPAAAARAA-PVAAAKEEKKEEPAEESDDDMGLSLFD 318 (318)
Q Consensus 241 p~~i~~a~~~~~al~~~~~~~~~~~~~ik~ll~~~~a~~~aa~~aa~~~~~-~~~~~~~~~~~~~~ee~d~dmgfglFd 318 (318)
||+|+|||+++++|+++++|+||+++++|++|+||++|++||+++++++++ +++++++++++|++|||||||||||||
T Consensus 241 ~~~i~~a~k~~~ala~~~~~~~~~~e~ik~~l~~p~~~a~aa~~a~~~~~~~~~~~~~~~~~~e~~ee~d~d~gf~lfd 319 (319)
T 3iz5_s 241 PHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319 (319)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCC---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCchhHHHHHhhhhhhccccccccccccccccccccccccccccccccccCCCCCCC
Confidence 999999999999999999999999999999999999998776222222111 122223333566778899999999998
No 2
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=100.00 E-value=2.1e-97 Score=701.07 Aligned_cols=312 Identities=42% Similarity=0.717 Sum_probs=138.2
Q ss_pred ccccHHHHHHHHHHHHHHHhccCeEEEEEecCCCchHHHHHHHHccCCcEEEEEehHHHHHHHHhhhhhhCCcccccccc
Q 036252 4 RLSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMKRSIRLHAERTGNRDLLNLIP 83 (318)
Q Consensus 4 ~~~~~e~K~~~v~~l~e~l~~y~~v~iv~~~~v~s~ql~~iR~~lr~~~~~~vgKNtL~~~Al~~~~~~~~~~~~~~L~~ 83 (318)
|..+|+||+++|++|+++|++|+++||++|+||+++|+|+||+.||+.++++||||||||+|++++.++ .+++++|.+
T Consensus 1 M~~~re~K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~--~~~le~L~~ 78 (312)
T 3u5i_q 1 MGGIREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSD--LPDFEKLLP 78 (312)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSS--SCGGGGTGG
T ss_pred CCCcHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCceEEEeehHHHHHHHhhCccc--ccChHHHHH
Confidence 446899999999999999999999999999999999999999999988899999999999999997554 345999999
Q ss_pred cccCceEEEEecCChhhHHHHHHhccccccccCCCccCceEEeCCCCCCCCCCchhhhhhcCCceEEecceeEeecCcEE
Q 036252 84 LLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVEL 163 (318)
Q Consensus 84 ~l~G~~gliFt~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d~~v 163 (318)
+|+||+||+||++||.+++++|.+|++++|||+|+|||+||+||+|+|+|+|++++|||+|||||+|++|+|+|.+|++|
T Consensus 79 ~L~G~~gl~Ft~~dp~~v~k~l~~~k~~~pAr~GaiAp~dV~Ip~G~tg~~P~~~s~fq~Lgiptki~kG~I~I~~d~~v 158 (312)
T 3u5i_q 79 FVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKV 158 (312)
T ss_dssp GCCSSEEEEEESSCHHHHHHHHHTSSCCC---------------------------------------------------
T ss_pred hccCCEEEEEECCCHHHHHHHHHhccCcccccCCCcCCceEEECCCCCCCCCcchHHHHHcCCCeEeeCCEEEEccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccCcchHHHHhhcCCCccccccceeeeeeCCcccCCccccCChHHHHHHHHHHHHHHHHHhhhcCcccCCCChhH
Q 036252 164 IKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHF 243 (318)
Q Consensus 164 ~~~G~~v~~~~A~lL~~L~i~p~~~~l~l~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~lsl~ag~pt~~s~p~~ 243 (318)
|++||+|+++||+||++|||+|++|+|.|.++|++|.+|++++|+||+|+|+++|.+|++++++||+++||||++++||+
T Consensus 159 ~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~i~~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~ 238 (312)
T 3u5i_q 159 VDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPXXXXXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHT 238 (312)
T ss_dssp -------------------------CCEEEEEEESSCCCCSTTTSCCSSTTTHHHHHHHTTCC-----------------
T ss_pred EeCCCCcCHHHHHHHHHcCcCcEEEEEEEEEEecCCceeccccccccccccccccccchhhHhhhHHhhCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhccccccchhcHHHHhcCcchhhhhccchhhhccCChhhhhhhhccCCccccccccCCCCCC
Q 036252 244 FINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFAAAAAPAAAARAAPVAAAKEEKKEEPAEESDDDMGLSLFD 318 (318)
Q Consensus 244 i~~a~~~~~al~~~~~~~~~~~~~ik~ll~~~~a~~~aa~~aa~~~~~~~~~~~~~~~~~~~ee~d~dmgfglFd 318 (318)
|.|||+++++|+++++|+||++++++++|+||++|++|| |+|++++++++++++++++|++|||||||||||||
T Consensus 239 i~~a~k~~~a~a~~~~~~~~~~~~ik~~la~p~a~a~aa-~~a~~~~~~~~~~~~~~~~e~~ee~d~d~gf~lfd 312 (312)
T 3u5i_q 239 LINNYKDLLAVAIAASYHYPEIEDLVDRIENPEKYAAAA-PAATSAASGDAAPAEEAAAEEEEESDDDMGFGLFD 312 (312)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhcccCccchhHHHHHhChhhhhccc-ccccccccccccccccccccccccccccCCCCCCC
Confidence 999999999999999999999999999999999998876 33332222222223333566778899999999998
No 3
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.1e-95 Score=690.59 Aligned_cols=315 Identities=53% Similarity=0.865 Sum_probs=28.0
Q ss_pred CCcccccHHHHHHHHHHHHHHHhccCeEEEEEecCCCchHHHHHHHHccCCcEEEEEehHHHHHHHHhhhhhhCCccccc
Q 036252 1 MATRLSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMKRSIRLHAERTGNRDLLN 80 (318)
Q Consensus 1 ~~~~~~~~e~K~~~v~~l~e~l~~y~~v~iv~~~~v~s~ql~~iR~~lr~~~~~~vgKNtL~~~Al~~~~~~~~~~~~~~ 80 (318)
|+ +..+++||+++|++|+++|++|+++||++|+||+++|+++||+.||+.++++|+||||||+||+++.+. .++++.
T Consensus 1 ~~-~~~~~e~K~~~V~eL~e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~--~~~~e~ 77 (317)
T 2zkr_g 1 MP-REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEK 77 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC-ccchHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhcCcEEEEEeHHHHHHHHhhCccc--ccchhh
Confidence 55 567899999999999999999999999999999999999999999988999999999999999998543 345999
Q ss_pred ccccccCceEEEEecCChhhHHHHHHhccccccccCCCccCceEEeCCCCCCCCCCchhhhhhcCCceEEecceeEeecC
Q 036252 81 LIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP 160 (318)
Q Consensus 81 L~~~l~G~~gliFt~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d 160 (318)
|.++|+||+||+||++||.+++++|.+|++++|||+|+|||+||+||+|+|+|+|+++++||+|||||+|++|+|+|.+|
T Consensus 78 L~~~L~G~~al~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~Ip~G~t~~~p~~~~~fq~LgipTkI~kG~I~i~~d 157 (317)
T 2zkr_g 78 LLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSD 157 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccCCCEEEEEECCCHHHHHHHHHHhCccchhccCCcCCceEEeCCCCCCCCCcchHHHHHcCCCeEeeCCeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCcccCcchHHHHhhcCCCccccccceeeeeeCCcccCCccccCChHHHHHHHHHHHHHHHHHhhhcCcccCCCC
Q 036252 161 VELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAA 240 (318)
Q Consensus 161 ~~v~~~G~~v~~~~A~lL~~L~i~p~~~~l~l~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~lsl~ag~pt~~s~ 240 (318)
++||++||+||++||+||++|||+|++|+|.|+++|++|.+|++++|+||+|+|+++|.+|++++++||+++||||++++
T Consensus 158 ~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~~~~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~~pt~~s~ 237 (317)
T 2zkr_g 158 VQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASV 237 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEecCCCCcCHHHHHHHHHcCCCceeeeeeeeEEEecCcccchHhccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhhhhhhccccccchhcHHHHhcCcchhhhhccchhhhcc--CChhhhhhhhccCCccccccccCCCCCC
Q 036252 241 PHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFAAAAAPAAAARA--APVAAAKEEKKEEPAEESDDDMGLSLFD 318 (318)
Q Consensus 241 p~~i~~a~~~~~al~~~~~~~~~~~~~ik~ll~~~~a~~~aa~~aa~~~~--~~~~~~~~~~~~~~~ee~d~dmgfglFd 318 (318)
||+|+|||+++++|+++++|+|++++++|++|+||++++++++|+|++++ ++++++++++++||+|||||||||||||
T Consensus 238 ~~~i~~a~~~~~ala~~~~~~~~ea~~vk~~l~~~~~~~~a~a~~a~~~~~~~~~~~~~~~~~~ee~ee~d~d~gf~lfd 317 (317)
T 2zkr_g 238 PHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD 317 (317)
T ss_dssp -----------------------CHHHHHTTTHHHHHHHHHHHHHTTSSHHHHHHHHHHSTTHHHHTSSCC---------
T ss_pred HHHHHHHHHHHHHHHhhcccChhhhhhHHHHHhccCccccccccccccccccccccccccccccCCccccccccCcCCCC
Confidence 99999999999999999999999999999999999998765323322211 1111223333455678889999999998
No 4
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-82 Score=607.36 Aligned_cols=269 Identities=26% Similarity=0.469 Sum_probs=206.7
Q ss_pred ccccHHHHHHHHHHHHHHHhccCeEEEEEecCCCchHHHHHHHHccCC-cEEEEEehHHHHHHHHhhhhhhCCccccccc
Q 036252 4 RLSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDH-SIVLMGKNTMMKRSIRLHAERTGNRDLLNLI 82 (318)
Q Consensus 4 ~~~~~e~K~~~v~~l~e~l~~y~~v~iv~~~~v~s~ql~~iR~~lr~~-~~~~vgKNtL~~~Al~~~~~~~~~~~~~~L~ 82 (318)
|.+.++||+++|++|+++|++|+++||++|+||+++|+|+||+.||+. ++|+||||||||+|++++.++++.+++++|.
T Consensus 1 m~~~~e~K~~~v~el~e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~ 80 (339)
T 3j21_k 1 MAHVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLI 80 (339)
T ss_dssp -----CCTTTHHHHHHHHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSS
T ss_pred CCccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHH
Confidence 456899999999999999999999999999999999999999999986 8999999999999999998777888899999
Q ss_pred ccccCceEEEEecCChhhHHHHHHhccccccccCCCccCceEEeCCCCCCCCCCc-hhhhhhcCCceEEecceeEeecCc
Q 036252 83 PLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPV 161 (318)
Q Consensus 83 ~~l~G~~gliFt~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~-~~~fq~LgIptki~~G~I~i~~d~ 161 (318)
++|+|||||+|||+||.+++++|.+|++++|||+|+|||+||+||+|+|++.|++ +++||+|||||+|++|+|+|.+|+
T Consensus 81 ~~L~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~Ip~G~t~~~p~~~~~~fq~lgiptki~~G~I~i~~d~ 160 (339)
T 3j21_k 81 NYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDT 160 (339)
T ss_dssp CCCCTTEEEEEESSCHHHHHHHHHHSCCCCCCCTTCBCSSCEEECCEECSCCSSHHHHHHHHHTCCEEEETTEEEECSCE
T ss_pred HHhcCCeEEEEECCCHHHHHHHHHHcCCcccccCCCcCCceEEecCCCCCCCCCccHHHHHHcCCCeEeccCeEEEccce
Confidence 9999999999999999999999999999999999999999999999999999999 699999999999999999999999
Q ss_pred EEeecCcccCcchHHHHhhcCCCccccccceeeeeeCCcccCCccccCChHHHHHHHHHHHHHHHHHhhhcCcccCCCCh
Q 036252 162 ELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAP 241 (318)
Q Consensus 162 ~v~~~G~~v~~~~A~lL~~L~i~p~~~~l~l~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~lsl~ag~pt~~s~p 241 (318)
+||++|++||++||+||++|||+|++|+|.|.++|++|.+|++++|+||+|+|+++|.+|++++.+||+++||||++++|
T Consensus 161 ~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~~~~a~~~a~~lsl~~~ypT~~svp 240 (339)
T 3j21_k 161 VVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIE 240 (339)
T ss_dssp EEECTTSBCCHHHHHHHHHHTCCCSCCSCEEEEEEETTEEECHHHHCCCHHHHHHHC-----------------------
T ss_pred EEEecCCCcCHHHHHHHHHcCCCcEEeeeeEEEEEeCCcEecHHhCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhhhhhccccccchhcHHHHhcC
Q 036252 242 HFFINGYKNVLSFAVATEYSFSQADKVKEYLKD 274 (318)
Q Consensus 242 ~~i~~a~~~~~al~~~~~~~~~~~~~ik~ll~~ 274 (318)
|+|+|||+++++|+++++|++|+ .+.++|+.
T Consensus 241 ~~i~~a~k~~lala~~~~~~~~e--~~~~~l~k 271 (339)
T 3j21_k 241 AIIQKAFLNAKAVAVEAGYITKE--TISDIIGR 271 (339)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHhhcCCCChh--hHHHHHHH
Confidence 99999999999999999999984 46665543
No 5
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=100.00 E-value=6.3e-78 Score=574.45 Aligned_cols=267 Identities=25% Similarity=0.437 Sum_probs=28.4
Q ss_pred ccccHHHHHHHHHHHHHHHhccCeEEEEEecCCCchHHHHHHHHccCCcEEEEEehHHHHHHHHhhhhhhCCcccccccc
Q 036252 4 RLSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMKRSIRLHAERTGNRDLLNLIP 83 (318)
Q Consensus 4 ~~~~~e~K~~~v~~l~e~l~~y~~v~iv~~~~v~s~ql~~iR~~lr~~~~~~vgKNtL~~~Al~~~~~~~~~~~~~~L~~ 83 (318)
|.+.++||.++|++|+++|++|+.+||++|+||+++|+++||+.||+.++|+|+||||||+||+++.. +++.|.+
T Consensus 9 ~k~~~e~K~~~V~eL~e~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~-----~le~L~~ 83 (348)
T 1vq8_G 9 TETIPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDD-----GLEDLNG 83 (348)
T ss_dssp ---CCHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHTC---------------
T ss_pred ccccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHHhcceEEEeHHHHHHHHHHhCCc-----chHHHHH
Confidence 55679999999999999999999999999999999999999999998899999999999999998743 3899999
Q ss_pred cccCceEEEEecCChhhHHHHHHhccccccccCCCccCceEEeCCCCCCCCCCch-hhhhhcCCceEEecceeEeecCcE
Q 036252 84 LLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVE 162 (318)
Q Consensus 84 ~l~G~~gliFt~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~-~~fq~LgIptki~~G~I~i~~d~~ 162 (318)
+|+|+|||+||++||.+++++|.+|++++|||+|.+||+||+||+|+|+|+|+++ ++||+|||||+|++|+|+|.+|++
T Consensus 84 ~LkG~tal~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~IpaG~t~~~P~~~~~~fq~LgIPTkI~kG~I~I~~d~~ 163 (348)
T 1vq8_G 84 YITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDST 163 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccCCEEEEEeCCCHHHHHHHHHHhcccchhhcCCcCCceEEeCCCCCCCCCCchHHHHHHcCCCEEeccCceEecCceE
Confidence 9999999999999999999999999999999999999999999999999999985 999999999999999999999999
Q ss_pred EeecCcccCcchHHHHhhcCCCccccccceeeeeeCCcccCCccccCChHHHHHHHHHHHHHHHHHhhhcCcccCCCChh
Q 036252 163 LIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPH 242 (318)
Q Consensus 163 v~~~G~~v~~~~A~lL~~L~i~p~~~~l~l~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~lsl~ag~pt~~s~p~ 242 (318)
||++|++||++||+||++|||+|++|+|.|+++|++|.+|++++|+||+|+|+++|.+|++++++||+++||||++++||
T Consensus 164 v~k~G~~v~~~~A~LL~~LgI~p~~f~l~l~~~~d~g~~~~~~vL~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~ 243 (348)
T 1vq8_G 164 VLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPT 243 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeeCCCCcCHHHHHHHHHcCCCceeeeeeeEEEEeCCcccCHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhccccccchhcHHHHhcCcch
Q 036252 243 FFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSK 277 (318)
Q Consensus 243 ~i~~a~~~~~al~~~~~~~~~~~~~ik~ll~~~~a 277 (318)
+|+|||+++++|+++++|+||+ .+.++|+..-+
T Consensus 244 ~i~~a~~~~~ala~~~~~~~~~--~~~~il~kA~~ 276 (348)
T 1vq8_G 244 MLQSDRGNAKSLALQAAIEDPE--VVPDLVSKADA 276 (348)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHhcCcCChh--hHHHHHHHHHH
Confidence 9999999999999999999995 68888866543
No 6
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.7e-72 Score=522.92 Aligned_cols=267 Identities=28% Similarity=0.480 Sum_probs=188.6
Q ss_pred cccHHHHHHHHHHHHHHHhccCeEEEEEecCCCchHHHHHHHHccCC-cEEEEEehHHHHHHHHhhhhhhCCcccccccc
Q 036252 5 LSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDH-SIVLMGKNTMMKRSIRLHAERTGNRDLLNLIP 83 (318)
Q Consensus 5 ~~~~e~K~~~v~~l~e~l~~y~~v~iv~~~~v~s~ql~~iR~~lr~~-~~~~vgKNtL~~~Al~~~~~~~~~~~~~~L~~ 83 (318)
.++++||+++|++|++++++|+.++|++|+|++++|+++||+.||+. ++++|+||||||+|++++.++++.++++.|.+
T Consensus 2 ~~~~e~K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~ 81 (284)
T 3a1y_G 2 AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVE 81 (284)
T ss_dssp CSSCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSC
T ss_pred CCcHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhh
Confidence 45789999999999999999999999999999999999999999975 99999999999999999987777788999999
Q ss_pred cccCceEEEEecCChhhHHHHHHhccccccccCCCccCceEEeCCCCCCCCCCc-hhhhhhcCCceEEecceeEeecCcE
Q 036252 84 LLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVE 162 (318)
Q Consensus 84 ~l~G~~gliFt~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~-~~~fq~LgIptki~~G~I~i~~d~~ 162 (318)
+|+|++||+||++||.+++++|.+|+.++|+|+|.|+++||+||+|+|++.|++ .++||+|||||+|++|+|+|.+|++
T Consensus 82 ~l~G~~al~Ft~~dp~~vak~l~~f~~~~~ar~Gaia~~dv~ip~g~~~~~p~~~~~~l~~LgIptki~~g~I~i~~d~~ 161 (284)
T 3a1y_G 82 YIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTT 161 (284)
T ss_dssp CCCTTEEEEEESSCHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred hcCCCEEEEEECCCHHHHHHHHHHhcchhhhhcCCccceeEEecCCCCCCCCcchHHHHHHCCCCeEEecCeeEeecceE
Confidence 999999999999999999999999999999999999999999999999998877 5999999999999999999999999
Q ss_pred EeecCcccCcchHHHHhhcCCCccccccceeeeeeCCcccCCccccCChHHHHHHHHHHHHHHHHHhhhcCcccCCCChh
Q 036252 163 LIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPH 242 (318)
Q Consensus 163 v~~~G~~v~~~~A~lL~~L~i~p~~~~l~l~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~lsl~ag~pt~~s~p~ 242 (318)
||++|++|+++||+||++|||+|++|++.+.++|++|.+|++++|+||+|++...|.+|++++.+||+++||||++++||
T Consensus 162 v~~~G~~l~~~~a~lL~~L~i~~~~~~l~i~~~~~~~~~~~~~vl~i~~e~~~~~~~~a~~~a~~lsl~~~~pt~~s~~~ 241 (284)
T 3a1y_G 162 VLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEA 241 (284)
T ss_dssp ---------------------CCCCCCCEEEEEEETTEEECHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTTHHH
T ss_pred EEecCCCcCHHHHHHHHHcCCCHHHHHHHHHHHhhccccCCHHHccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhccccccchhcHHHHhc
Q 036252 243 FFINGYKNVLSFAVATEYSFSQADKVKEYLK 273 (318)
Q Consensus 243 ~i~~a~~~~~al~~~~~~~~~~~~~ik~ll~ 273 (318)
+|.|||+++++||++++|+||+ .++++|+
T Consensus 242 ~i~ka~~~~~ala~~~~~~~~~--~~~~~~~ 270 (284)
T 3a1y_G 242 IIQKAFLNAKTVAIEAGYITKE--TIQDIIG 270 (284)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTT--THHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCChh--hHHHHHH
Confidence 9999999999999999999994 6888885
No 7
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.2e-67 Score=471.33 Aligned_cols=210 Identities=31% Similarity=0.495 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHHHHHhccCeEEEEEecCCCchHHHHHHHHccCCcEEEEEehHHHHHHHHhhhhhhCCcccccccccccC
Q 036252 8 AEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMKRSIRLHAERTGNRDLLNLIPLLQG 87 (318)
Q Consensus 8 ~e~K~~~v~~l~e~l~~y~~v~iv~~~~v~s~ql~~iR~~lr~~~~~~vgKNtL~~~Al~~~~~~~~~~~~~~L~~~l~G 87 (318)
++||+++|++|++++++|+++||++|+|++++|+|+||+.||+.++++||||||||+|++++.++++.+++++|.++|+|
T Consensus 2 ~e~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G 81 (213)
T 3jsy_A 2 APWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVER 81 (213)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCS
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcC
Confidence 48999999999999999999999999999999999999999988899999999999999999877888889999999999
Q ss_pred ceEEEEecCChhhHHHHHHhccccccccCCCccCceEEeCCCCCCCCCCc-hhhhhhcCCceEEecceeEeecCcEEeec
Q 036252 88 NVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIKK 166 (318)
Q Consensus 88 ~~gliFt~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~-~~~fq~LgIptki~~G~I~i~~d~~v~~~ 166 (318)
|+||+||++||.+++++|.+|++++|||+|++||+||+||+|+|++.|++ +++||+|||||+|++|+|+|.+|++||++
T Consensus 82 ~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~ip~G~t~~~p~~~~~~~q~lgiptki~~G~I~i~~d~~v~k~ 161 (213)
T 3jsy_A 82 GAAILVTDMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKK 161 (213)
T ss_dssp SEEEEEESSCHHHHHHHHHHSCEEECCCTTCBCSSCEEECSEEEEECSSTHHHHHHHTTCCEEEETTEEEECSCEEEECT
T ss_pred CeEEEEeCCCHHHHHHHHHHcCCcccccCCCcCCceEEECCCCCCCCCCccHHHHHHcCCceEeecCeEEEccceEEEec
Confidence 99999999999999999999999999999999999999999999999999 69999999999999999999999999999
Q ss_pred CcccCcchHHHHhhcCCCccccccceeeeeeCCcccCCccccCChHHHHHH
Q 036252 167 GDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATK 217 (318)
Q Consensus 167 G~~v~~~~A~lL~~L~i~p~~~~l~l~~~~~~g~~~~~~~l~it~e~~~~~ 217 (318)
||+||++||+||++|||+|++|++.|.++|++|.+|++++|+||+|+|+++
T Consensus 162 G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~ 212 (213)
T 3jsy_A 162 GEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLAD 212 (213)
T ss_dssp TSBCCHHHHHHHHHTTCCCEEESCEEEEEEETTEEECHHHHHHHCSCTTSC
T ss_pred CCCcCHHHHHHHHHcCCCcEEEEEEEEEEEeCCceeCHHHcccCHHHHhhh
Confidence 999999999999999999999999999999999999999999999988643
No 8
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=99.86 E-value=4.5e-22 Score=173.16 Aligned_cols=95 Identities=17% Similarity=0.288 Sum_probs=90.3
Q ss_pred cHHHHHHHHHHHHHHHhccC-eEEEEEecCCCchHHHHHHHHccC-CcEEEEEehHHHHHHHHhhhhhhCCccccccccc
Q 036252 7 KAEKKIAYDARLCKLLEEYS-QILIVAADNVGSNQLQHIRAGLRD-HSIVLMGKNTMMKRSIRLHAERTGNRDLLNLIPL 84 (318)
Q Consensus 7 ~~e~K~~~v~~l~e~l~~y~-~v~iv~~~~v~s~ql~~iR~~lr~-~~~~~vgKNtL~~~Al~~~~~~~~~~~~~~L~~~ 84 (318)
+|+||.++|++|+++|++|+ .++|++|+|++++|+++||++||+ +++++|+|||||++|++++. ++. .++
T Consensus 2 ~~~~K~~~v~el~~~l~~~~~~v~v~~~~gltv~~~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~-------~~~-~~~ 73 (173)
T 2j01_J 2 PNKRNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIRLALKELG-------LPE-LDG 73 (173)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEehhHHHHHHHhcCC-------CCc-ccc
Confidence 58999999999999999999 999999999999999999999997 58999999999999999864 889 999
Q ss_pred ccCceEEEEecCChhhHHHHHHhccc
Q 036252 85 LQGNVGMIFTKGDLKEVSDEVSKHKV 110 (318)
Q Consensus 85 l~G~~gliFt~~dp~~v~k~l~~~k~ 110 (318)
|+|+++++|| +||.+++++|.+|..
T Consensus 74 l~G~~a~~fs-~dp~~~ak~l~~f~k 98 (173)
T 2j01_J 74 LQGPSAVVFY-EDPVAAAKTLVQFAK 98 (173)
T ss_pred ccCCEEEEEe-CCHHHHHHHHHHHHH
Confidence 9999999999 999999999998854
No 9
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=99.86 E-value=9.5e-22 Score=172.10 Aligned_cols=98 Identities=16% Similarity=0.222 Sum_probs=92.7
Q ss_pred ccHHHHHHHHHHHHHHHhccCeEEEEEecCCCchHHHHHHHHccC----CcEEEEEehHHHHHHHHhhhhhhCCcccccc
Q 036252 6 SKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRD----HSIVLMGKNTMMKRSIRLHAERTGNRDLLNL 81 (318)
Q Consensus 6 ~~~e~K~~~v~~l~e~l~~y~~v~iv~~~~v~s~ql~~iR~~lr~----~~~~~vgKNtL~~~Al~~~~~~~~~~~~~~L 81 (318)
.+|+||.++|++|+++|++|+.++|++|+|++++|+++||++||+ +++++|+|||||++|++++. ++.|
T Consensus 3 m~~~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL~~~Al~~~~-------~~~L 75 (180)
T 1zav_A 3 LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAE-------YEGY 75 (180)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTT-------CCSC
T ss_pred CCHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeEEEEehHHHHHHHHccCC-------hhhH
Confidence 369999999999999999999999999999999999999999996 49999999999999999864 9999
Q ss_pred cccccCceEEEEec-CChhhHHHHHHhccc
Q 036252 82 IPLLQGNVGMIFTK-GDLKEVSDEVSKHKV 110 (318)
Q Consensus 82 ~~~l~G~~gliFt~-~dp~~v~k~l~~~k~ 110 (318)
.++|+|+++++||+ +||.+++++|.+|..
T Consensus 76 ~~~l~G~~a~~fs~~~dp~~~ak~l~~f~k 105 (180)
T 1zav_A 76 EEFLKGPTAVLYVTEGDPVEAVKIIYNFYK 105 (180)
T ss_dssp GGGCSSSEEEEEESSSCTHHHHHHHHHHHH
T ss_pred HHhCcCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 99999999999999 999999999998854
No 10
>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*
Probab=99.83 E-value=1.5e-22 Score=174.79 Aligned_cols=100 Identities=11% Similarity=0.135 Sum_probs=94.2
Q ss_pred ccccHHHHHHHHHHHHHHHhccCeEEEEEecCCCchHHHHHHHHccC-CcEEEEEehHHHHHHHHhhhhhhCCccccccc
Q 036252 4 RLSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRD-HSIVLMGKNTMMKRSIRLHAERTGNRDLLNLI 82 (318)
Q Consensus 4 ~~~~~e~K~~~v~~l~e~l~~y~~v~iv~~~~v~s~ql~~iR~~lr~-~~~~~vgKNtL~~~Al~~~~~~~~~~~~~~L~ 82 (318)
|..+|++|.++|++|++.|++|+.++++||+|++++|+++||+.||+ +++++|+||||+++|++++. ++.|.
T Consensus 1 m~~~r~~K~~~V~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~-------~~~L~ 73 (165)
T 3sgf_H 1 MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTP-------FECLK 73 (165)
T ss_dssp CCSHHHHHHHHHHHHHHHHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTTTCT-------TTCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHhcCC-------cchhH
Confidence 45689999999999999999999999999999999999999999998 58999999999999999853 99999
Q ss_pred ccccCceEEEEecCChhhHHHHHHhccc
Q 036252 83 PLLQGNVGMIFTKGDLKEVSDEVSKHKV 110 (318)
Q Consensus 83 ~~l~G~~gliFt~~dp~~v~k~l~~~k~ 110 (318)
++|+||++++||++||.++++++.+|..
T Consensus 74 ~~l~G~tai~fs~~dp~~~aK~l~~f~K 101 (165)
T 3sgf_H 74 DAFVGPTLIAYSMEHPGAAARLFKEFAK 101 (165)
T ss_dssp CSTTCCSCCCEEEECSSCSHHHHHHHHH
T ss_pred HhCcCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998854
No 11
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=99.68 E-value=7.9e-18 Score=135.06 Aligned_cols=86 Identities=38% Similarity=0.470 Sum_probs=40.0
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhhhcCcccCCCChhHHHHHHHhhhhhhhhccccccchhcHHHHhcCcchhhhhccch-
Q 036252 207 LDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFAAAAAPA- 285 (318)
Q Consensus 207 l~it~e~~~~~~~~a~~~~~~lsl~ag~pt~~s~p~~i~~a~~~~~al~~~~~~~~~~~~~ik~ll~~~~a~~~aa~~a- 285 (318)
..||.++|. +|...+|+.+++.||.+|++++.+ ++|+++|+++++++++++++
T Consensus 20 ~~itad~I~-----------~ilkAaGveVe~~~~~lfakaL~g---------------knI~eLI~sv~~gg~a~~a~a 73 (110)
T 3iz5_t 20 IPITSEKIA-----------TVVKAAGIKVEAYWPALFAKLLEK---------------RSVDDLILSVGSGGGGAPAAA 73 (110)
T ss_dssp CCCSHHHHH-----------HHHHHHTCCCCSHHHHHHHHHHTT---------------CCHHHHHTCCC----------
T ss_pred CCcChHHHH-----------HHHHHhCCcccHHHHHHHHHHcCC---------------CCHHHHHhcCCCccccccccc
Confidence 468888877 899999999999999999999988 78999999987755432111
Q ss_pred hh--h-c-cCChhhhhhhhccCCccccccccCCCCCC
Q 036252 286 AA--A-R-AAPVAAAKEEKKEEPAEESDDDMGLSLFD 318 (318)
Q Consensus 286 a~--~-~-~~~~~~~~~~~~~~~~ee~d~dmgfglFd 318 (318)
++ + + +++++++++++|+|++|||||||||||||
T Consensus 74 ~~a~~~~~~~~a~~~~~e~k~ee~EEsddDmGfgLFd 110 (110)
T 3iz5_t 74 AAAPAAGGAAAAEEKKEEKKEEAKEESDDDMGFSLFD 110 (110)
T ss_dssp -------------------------------------
T ss_pred cccccccccccccchhhhhccccccccccccccccCC
Confidence 11 1 1 11222334444567788999999999998
No 12
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=99.67 E-value=1.4e-17 Score=132.87 Aligned_cols=86 Identities=30% Similarity=0.433 Sum_probs=40.0
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhhhcCcccCCCChhHHHHHHHhhhhhhhhccccccchhcHHHHhcCcchhhhhccchh
Q 036252 207 LDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFAAAAAPAA 286 (318)
Q Consensus 207 l~it~e~~~~~~~~a~~~~~~lsl~ag~pt~~s~p~~i~~a~~~~~al~~~~~~~~~~~~~ik~ll~~~~a~~~aa~~aa 286 (318)
..||.++|. +|...+|+.+++.||.+|++++.+ ++|+++|+|.+++++++++++
T Consensus 19 ~~~tad~I~-----------~ilkAaGveVe~~~~~lfa~aL~g---------------knI~eLI~~~~ag~~~~aa~a 72 (106)
T 3izc_t 19 IEISSEKLL-----------TLTNAANVPDENIWADIFAKALDG---------------QNLKDLLVNFSAGAAAPAGVA 72 (106)
T ss_dssp CCCSHHHHH-----------HHHHHHTCCCCHHHHHHHHHHHTT---------------CCHHHHTTCCC----------
T ss_pred CCCCHHHHH-----------HHHHHcCCcccHHHHHHHHHHhcC---------------CCHHHHHHhccCcCccccccc
Confidence 368888877 999999999999999999999988 789999999877544321111
Q ss_pred -hhc-cCChhhhhhhhccCCccccccccCCCCCC
Q 036252 287 -AAR-AAPVAAAKEEKKEEPAEESDDDMGLSLFD 318 (318)
Q Consensus 287 -~~~-~~~~~~~~~~~~~~~~ee~d~dmgfglFd 318 (318)
+++ +++++++++++++|++|||||||||||||
T Consensus 73 ~~a~~~~~a~~~~~~~kee~~EEsddDmGfgLFd 106 (106)
T 3izc_t 73 GGVAGGEAGEAEAEKEEEEAKEESDDDMGFGLFD 106 (106)
T ss_dssp ----------------------------------
T ss_pred ccccccccccchhhhhhcccccccccccccCcCC
Confidence 111 11222334444567788999999999998
No 13
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=99.61 E-value=6.8e-17 Score=128.90 Aligned_cols=84 Identities=35% Similarity=0.397 Sum_probs=35.8
Q ss_pred cCChHHHHHHHHHHHHHHHHHhhhcCcccCCCChhHHHHHHHhhhhhhhhccccccchhcHHHHhc-------Ccchhhh
Q 036252 208 DLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVLSFAVATEYSFSQADKVKEYLK-------DPSKFAA 280 (318)
Q Consensus 208 ~it~e~~~~~~~~a~~~~~~lsl~ag~pt~~s~p~~i~~a~~~~~al~~~~~~~~~~~~~ik~ll~-------~~~a~~~ 280 (318)
.||.++|. +|..++|+.+++.||.+|.+++.+ ++|+++|+ +.+++++
T Consensus 16 e~tad~I~-----------~ilkAaGveVe~~~~~~f~~aL~g---------------kdI~eLIa~g~~klasv~sgg~ 69 (106)
T 3izc_v 16 TPDATKIK-----------AILESVGIEIEDEKVSSVLSALEG---------------KSVDELITEGNEKLAAVPAAGP 69 (106)
T ss_dssp CCTTTTHH-----------HHHHHHTCCCCHHHHHHHHHHHTT---------------CCHHHHHHSCC-----------
T ss_pred CCCHHHHH-----------HHHHHcCCCcCHHHHHHHHHHcCC---------------CCHHHHHHhhhHHhccCCCccc
Confidence 47777776 899999999999999999999988 78999997 5444333
Q ss_pred hccchhhhccCChhhhhhhhccCCccccccccCCCCCC
Q 036252 281 AAAPAAAARAAPVAAAKEEKKEEPAEESDDDMGLSLFD 318 (318)
Q Consensus 281 aa~~aa~~~~~~~~~~~~~~~~~~~ee~d~dmgfglFd 318 (318)
++++++++++ +++++++++++|++|||||||||||||
T Consensus 70 a~aa~a~~a~-~~~~~~~e~kee~~EEsdddmGfgLFd 106 (106)
T 3izc_v 70 ASAGGAAAAS-GDAAAEEEKEEEAAEESDDDMGFGLFD 106 (106)
T ss_dssp --------------------------------------
T ss_pred cccccccccc-cccccccccccccccccccccCCCCCC
Confidence 2211111111 222333444567788999999999998
No 14
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=99.59 E-value=1.7e-16 Score=127.88 Aligned_cols=85 Identities=32% Similarity=0.395 Sum_probs=35.7
Q ss_pred cCChHHHHHHHHHHHHHHHHHhhhcCcccCCCChhHHHHHHHhhhhhhhhccccccchhcHHHHhc-------Ccchhhh
Q 036252 208 DLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVLSFAVATEYSFSQADKVKEYLK-------DPSKFAA 280 (318)
Q Consensus 208 ~it~e~~~~~~~~a~~~~~~lsl~ag~pt~~s~p~~i~~a~~~~~al~~~~~~~~~~~~~ik~ll~-------~~~a~~~ 280 (318)
+||.++|. +|...+|+.+++.||.+|++++++ ++|+++|+ +++++++
T Consensus 17 ~ptad~I~-----------~ILkAaGveVe~~~~~lf~~aL~g---------------k~I~eLIa~G~~kl~~v~~gg~ 70 (113)
T 3iz5_v 17 SPSAEDLT-----------SILESVGCEIDNEKMELMLSQVKG---------------KDITELLAAGREKFAAVPSGGG 70 (113)
T ss_dssp CCTTTTHH-----------HHHHHHTCCCCHHHHHHHHHHHTT---------------CCHHHHHHSCC-----------
T ss_pred CCCHHHHH-----------HHHHHcCCCcCHHHHHHHHHHhcC---------------CCHHHHHHhhHHHhccCCCccc
Confidence 57788776 899999999999999999999988 68999995 5544333
Q ss_pred hc-cchh-h-h-ccCC-hhhhhhhhccCCccccccccCCCCCC
Q 036252 281 AA-APAA-A-A-RAAP-VAAAKEEKKEEPAEESDDDMGLSLFD 318 (318)
Q Consensus 281 aa-~~aa-~-~-~~~~-~~~~~~~~~~~~~ee~d~dmgfglFd 318 (318)
++ ++++ + + ++++ ++++++++++|++|||||||||||||
T Consensus 71 aa~a~a~a~a~~~~a~~a~~~~~e~k~ee~EEsDdDmGFgLFD 113 (113)
T 3iz5_v 71 GVAVSAAAPAAGGAAAPAAESKKEEKVVEKEESDDDMGFSLFD 113 (113)
T ss_dssp -------------------------------------------
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccCcCC
Confidence 22 1111 1 1 1111 12233344567788899999999998
No 15
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.30 E-value=6.4e-13 Score=126.57 Aligned_cols=227 Identities=14% Similarity=0.129 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhccCeEEEEEecCCCchH------------HHHHHHHccCCcEEEEEehHHH--HHHHHhhhhhhCC-cc
Q 036252 13 AYDARLCKLLEEYSQILIVAADNVGSNQ------------LQHIRAGLRDHSIVLMGKNTMM--KRSIRLHAERTGN-RD 77 (318)
Q Consensus 13 ~~v~~l~e~l~~y~~v~iv~~~~v~s~q------------l~~iR~~lr~~~~~~vgKNtL~--~~Al~~~~~~~~~-~~ 77 (318)
..+.+||..++.....++|-=+.|-..- +..|-..|+|..-+.+.+.... ++.|.+.....+. .|
T Consensus 36 ~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~L~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~G 115 (339)
T 3j21_k 36 YPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPG 115 (339)
T ss_dssp THHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSSCCCCTTEEEEEESSCHHHHHHHHHHSCCCCCCCTT
T ss_pred HHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHHHHhcCCeEEEEECCCHHHHHHHHHHcCCcccccCC
Confidence 4577899999887544444222221222 2334445677777778766543 3334433211111 00
Q ss_pred ----cccccccccCceEEEEecCChhhHHHHHHhccccccccCCC--ccCceEEeCCCCCCCCCCchhhhhhcCCceEEe
Q 036252 78 ----LLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKIN 151 (318)
Q Consensus 78 ----~~~L~~~l~G~~gliFt~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~ 151 (318)
.+-..+ .|+| ...|..+...|.....|+....|. |....+++++|.+ ++|++...|+.|||...--
T Consensus 116 aiAp~dV~Ip--~G~t-----~~~p~~~~~~fq~lgiptki~~G~I~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~ 187 (339)
T 3j21_k 116 AKVPKDVVIP--AGPT-----SLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEE-ITPELANILNALGIQPLEV 187 (339)
T ss_dssp CBCSSCEEEC--CEEC-----SCCSSHHHHHHHHHTCCEEEETTEEEECSCEEEECTTSB-CCHHHHHHHHHHTCCCSCC
T ss_pred CcCCceEEec--CCCC-----CCCCCccHHHHHHcCCCeEeccCeEEEccceEEEecCCC-cCHHHHHHHHHcCCCcEEe
Confidence 111112 3555 568999899999999999999999 7778889999999 9999999999999999766
Q ss_pred cceeEeecCcEEeecCcccCcchHHHHhhcCCCccccccceeeeeeCCcccCCccccCChHHHHHHHHHHHHHHHHHhhh
Q 036252 152 KGTVEIITPVELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALS 231 (318)
Q Consensus 152 ~G~I~i~~d~~v~~~G~~v~~~~A~lL~~L~i~p~~~~l~l~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~lsl~ 231 (318)
+-+|. .+...|...+++. |+|....|.-.+...+.+...++.++-++|++.+...+.+|+.++.+|+.+
T Consensus 188 ~l~l~-----~~~~~g~i~~~~~------L~i~~e~~~~~~~~a~~~a~~lsl~~~ypT~~svp~~i~~a~k~~lala~~ 256 (339)
T 3j21_k 188 GLDLL-----AVYEDGIIYTPDV------LAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNAKAVAVE 256 (339)
T ss_dssp SCEEE-----EEEETTEEECHHH------HCCCHHHHHHHC---------------------------------------
T ss_pred eeeEE-----EEEeCCcEecHHh------CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 66642 4677888888864 669999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCChhHHHHHHHhhhhhhhhc
Q 036252 232 IRYPTIAAAPHFFINGYKNVLSFAVAT 258 (318)
Q Consensus 232 ag~pt~~s~p~~i~~a~~~~~al~~~~ 258 (318)
++|.++++++.++.+|++++++++...
T Consensus 257 ~~~~~~e~~~~~l~ka~~~~~alaa~~ 283 (339)
T 3j21_k 257 AGYITKETISDIIGRAIRAMLLLAQQL 283 (339)
T ss_dssp ---------------------------
T ss_pred cCCCChhhHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999887654
No 16
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=99.03 E-value=2.3e-11 Score=115.93 Aligned_cols=166 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred cCChhhHHHHHHhccccccccCCC--ccCceEEeCCCCCCCCCCchhhhhhcCCceEEecceeEeecCcEEeecCcccCc
Q 036252 95 KGDLKEVSDEVSKHKVAAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDRVGS 172 (318)
Q Consensus 95 ~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d~~v~~~G~~v~~ 172 (318)
..+|..+...|.....|+....|. |....+++++|.. ++|++...|+.|||...--+-+|. .+...|...++
T Consensus 132 ~~~P~~~~~~fq~LgIPTkI~kG~I~I~~d~~v~k~G~~-v~~~~A~LL~~LgI~p~~f~l~l~-----~~~d~g~~~~~ 205 (348)
T 1vq8_G 132 GVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEE-VSQELSNVLNELGIEPKEVGLDLR-----AVFADGVLFEP 205 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCchHHHHHHcCCCEEeccCceEecCceEEeeCCCC-cCHHHHHHHHHcCCCceeeeeeeE-----EEEeCCcccCH
Confidence 346888889999999999999997 7778889999998 999999999999998876665533 45567777777
Q ss_pred chHHHHhhcCCCccccccceeeeeeCCcccCCccccCChHHHHHHHHHHHHHHHHHhhhcCcccCCCChhHHHHHHHhhh
Q 036252 173 SESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVL 252 (318)
Q Consensus 173 ~~A~lL~~L~i~p~~~~l~l~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~lsl~ag~pt~~s~p~~i~~a~~~~~ 252 (318)
+. |+|....|.-.+...+.+-..++.++-++|.+.+.-.+.+|+.++.+|+++++|.++++++.++.+|+.+++
T Consensus 206 ~v------L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~~~~~~~~il~kA~~~~~ 279 (348)
T 1vq8_G 206 EE------LELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSDRGNAKSLALQAAIEDPEVVPDLVSKADAQVR 279 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH------ccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHHHHHH
Confidence 65 559999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccchhcHHHHh
Q 036252 253 SFAVATEYSFSQADKVKEYL 272 (318)
Q Consensus 253 al~~~~~~~~~~~~~ik~ll 272 (318)
+|+...+=.-...+.+++.+
T Consensus 280 ala~~~~~~~al~~~~~~~~ 299 (348)
T 1vq8_G 280 ALASQIDDEEALPEELQGVE 299 (348)
T ss_dssp --------------------
T ss_pred HHHHhcCcccccchHHhhhh
Confidence 99877641101334455444
No 17
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=98.86 E-value=2.7e-10 Score=107.23 Aligned_cols=208 Identities=12% Similarity=0.067 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhccCeEEEEEe-------cCCC--chHHHHHHHHccCCcEEEEEehHHH--HHHHHhhhhhhCC-cc--
Q 036252 12 IAYDARLCKLLEEYSQILIVAA-------DNVG--SNQLQHIRAGLRDHSIVLMGKNTMM--KRSIRLHAERTGN-RD-- 77 (318)
Q Consensus 12 ~~~v~~l~e~l~~y~~v~iv~~-------~~v~--s~ql~~iR~~lr~~~~~~vgKNtL~--~~Al~~~~~~~~~-~~-- 77 (318)
...+.+||..+++...++++.- .+.. ...+.+|-..|+|..-+.+.+.... ++.|.+.....+. .|
T Consensus 35 v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~le~L~~~L~G~~gl~Ft~~dp~~v~k~l~~~k~~~pAr~Gai 114 (312)
T 3u5i_q 35 SQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAV 114 (312)
T ss_dssp HHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSSSCGGGGTGGGCCSSEEEEEESSCHHHHHHHHHTSSCCC-------
T ss_pred HHHHHHHHHHHhcCceEEEeehHHHHHHHhhCcccccChHHHHHhccCCEEEEEECCCHHHHHHHHHhccCcccccCCCc
Confidence 4567889999987765554321 1211 1245566677888777777765433 3334332111110 00
Q ss_pred --cccccccccCceEEEEecCChhhHHHHHHhccccccccCCC--ccCceEEeCCCCCCCCCCchhhhhhcCCceEEecc
Q 036252 78 --LLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKG 153 (318)
Q Consensus 78 --~~~L~~~l~G~~gliFt~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G 153 (318)
.+-..+ .|+|+ .+|.. ...|.....|+....|. |....+++++|.. ++|++...|+.|||...--+-
T Consensus 115 Ap~dV~Ip--~G~tg-----~~P~~-~s~fq~Lgiptki~kG~I~I~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~~l 185 (312)
T 3u5i_q 115 APEDIWVR--AVNTG-----MEPGK-TSFFQALGVPTKIARGTIEIVSDVKVVDAGNK-VGQSEASLLNLLNISPFTFGL 185 (312)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CCceEEEC--CCCCC-----CCCcc-hHHHHHcCCCeEeeCCEEEEccceEEEeCCCC-cCHHHHHHHHHcCcCcEEEEE
Confidence 111222 47775 46654 67799999999999999 5677789999999 999999999999999987766
Q ss_pred eeEeecCcEEeecCcccCcchHHHHhhcCCCccccccceeeeeeCCcccCCccccCChHHHHHHHHHHHHHHHHHhhhcC
Q 036252 154 TVEIITPVELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIR 233 (318)
Q Consensus 154 ~I~i~~d~~v~~~G~~v~~~~A~lL~~L~i~p~~~~l~l~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~lsl~ag 233 (318)
+|. .+...|...+++. |+|....|.-.+...+.+-..++.++-++|.+.+.-.+.+|+.++.+|+++++
T Consensus 186 ~l~-----~~~d~g~i~~~~~------L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~k~~~a~a~~~~ 254 (312)
T 3u5i_q 186 TVV-----QVYDNGQVFPXXX------XXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHTLINNYKDLLAVAIAAS 254 (312)
T ss_dssp EEE-----EEEESSCCCCSTT------TSCCSSTTTHHHHHHHTTCC---------------------------------
T ss_pred EEE-----EEecCCceecccc------ccccccccccccccchhhHhhhHHhhCCCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 643 4777889888884 67999999999999999988999999999999999999999999999999999
Q ss_pred cccCCC
Q 036252 234 YPTIAA 239 (318)
Q Consensus 234 ~pt~~s 239 (318)
|..++.
T Consensus 255 ~~~~~~ 260 (312)
T 3u5i_q 255 YHYPEI 260 (312)
T ss_dssp ------
T ss_pred ccCccc
Confidence 976655
No 18
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=98.78 E-value=1.4e-09 Score=102.72 Aligned_cols=213 Identities=12% Similarity=0.082 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHhccCeEEEEEecCCCchH------------HHHHHHHccCCcEEEEEehHHH--HHHHHhhhhhhCC-c
Q 036252 12 IAYDARLCKLLEEYSQILIVAADNVGSNQ------------LQHIRAGLRDHSIVLMGKNTMM--KRSIRLHAERTGN-R 76 (318)
Q Consensus 12 ~~~v~~l~e~l~~y~~v~iv~~~~v~s~q------------l~~iR~~lr~~~~~~vgKNtL~--~~Al~~~~~~~~~-~ 76 (318)
...+.+||..++....+.++.- .|-..- +.+|-..|+|+.-+.+.+.... ++.|.......+. .
T Consensus 38 v~ql~~LR~~lR~~~~~~V~KN-TL~r~Al~~~~e~~~~~~le~L~~~L~G~~gl~FT~~dp~~v~k~l~~~k~~~pAr~ 116 (319)
T 3iz5_s 38 SNQLQEIRKGLRGDSIVLMGKN-TLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116 (319)
T ss_dssp HHHHHHHHHHHHHHSCEECCST-TTCCHHHHHHHSSSCCSSSSSSSCCCCTTEEEEEESSCHHHHHHHHHHSCEEECCCT
T ss_pred HHHHHHHHHHHhCCcEEEEEhH-HHHHHHHhhchhhhccccHHHHHHHhcCCeEEEEECCChHHHHHHHHHccccccccC
Confidence 4567888888885544443322 222222 2233445677777777765543 3334433211111 0
Q ss_pred c----cccccccccCceEEEEecCChhhHHHHHHhccccccccCCC--ccCceEEeCCCCCCCCCCchhhhhhcCCceEE
Q 036252 77 D----LLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKI 150 (318)
Q Consensus 77 ~----~~~L~~~l~G~~gliFt~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki 150 (318)
| .+-..+ .|+|+ .+|.. ...|.....|+....|. |....+++++|+. ++|++...|+.|||...-
T Consensus 117 GaiAp~dV~Vp--aG~tg-----~~P~~-~s~fq~LgiptkI~kG~I~I~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~ 187 (319)
T 3iz5_s 117 GLVAPVDVVVP--PGNTG-----LDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIKKGDK-VGSSESALLAKLGIRPFS 187 (319)
T ss_dssp TCBCSSCEEEC--CEECC-----CCSSC-THHHHHHTCCEEEETTEEEECSCEEEECTTSB-CCHHHHHHHHHHTCCCEE
T ss_pred CCcCCceEEEC--CCCCC-----CCCcc-hHHHHHcCCceEEecCeEEEcCceEEEecCCC-cCHHHHHHHHHhCCCceE
Confidence 0 111122 46764 56666 37899999999999999 6677889999999 999999999999999998
Q ss_pred ecceeEeecCcEEeecCcccCcchHHHHhhcCCCccccccceeeeeeCCcccCCccccCChHHHHHHHHHHHHHHHHHhh
Q 036252 151 NKGTVEIITPVELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLAL 230 (318)
Q Consensus 151 ~~G~I~i~~d~~v~~~G~~v~~~~A~lL~~L~i~p~~~~l~l~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~lsl 230 (318)
-+-+|. .+...|...+++. |+|....|.-.+...+.+-..++.++-++|.+.+.-.+.+|+.++.+|++
T Consensus 188 f~l~l~-----~~~d~g~i~~~~v------L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~k~~~ala~ 256 (319)
T 3iz5_s 188 YGLVIT-----NVYDSGSVFSPEV------LDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAV 256 (319)
T ss_dssp ESCEEE-----EEEETTEEECHHH------HSCCCHHHHHHHHHHHHHHHHHHHHHTCCSTTTHHHHHHHHHHHHHHHHS
T ss_pred EEeeee-----EEEeCCceeCHHH------cCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 777643 4667788888874 56999999988998888888888888999999999999999999999999
Q ss_pred hcCcccC--CCChhHHH
Q 036252 231 SIRYPTI--AAAPHFFI 245 (318)
Q Consensus 231 ~ag~pt~--~s~p~~i~ 245 (318)
+++|..+ +.+...+.
T Consensus 257 ~~~~~~~~~e~ik~~l~ 273 (319)
T 3iz5_s 257 ETEYSYPHADKIKEYLK 273 (319)
T ss_dssp SSSCCC-----------
T ss_pred hcCcccCCchhHHHHHh
Confidence 9999776 44444443
No 19
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=98.73 E-value=1.8e-09 Score=101.87 Aligned_cols=203 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCeEEEEE-------ecCC--CchHHHHHHHHccCCcEEEEEehHHHH--HHHHhhhhhhCC-cc---
Q 036252 13 AYDARLCKLLEEYSQILIVA-------ADNV--GSNQLQHIRAGLRDHSIVLMGKNTMMK--RSIRLHAERTGN-RD--- 77 (318)
Q Consensus 13 ~~v~~l~e~l~~y~~v~iv~-------~~~v--~s~ql~~iR~~lr~~~~~~vgKNtL~~--~Al~~~~~~~~~-~~--- 77 (318)
..+.+||..++....+.++. +.+. ....+..|-..|+|..-+.+.+..... +.+.+.....+. .|
T Consensus 38 ~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~~e~L~~~L~G~~al~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiA 117 (317)
T 2zkr_g 38 KQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIA 117 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCcEEEEEeHHHHHHHHhhCcccccchhhhhhccCCCEEEEEECCCHHHHHHHHHHhCccchhccCCcC
Confidence 44566777776554433332 2222 112567777788877666665443322 222221111110 00
Q ss_pred -cccccccccCceEEEEecCChhhHHHHHHhccccccccCCC--ccCceEEeCCCCCCCCCCchhhhhhcCCceEEecce
Q 036252 78 -LLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGT 154 (318)
Q Consensus 78 -~~~L~~~l~G~~gliFt~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~ 154 (318)
.+-..+ .|+|+ .+|.. ...|.+...|+....|. |....+++++|.. ++|++...|+.|||...--+-+
T Consensus 118 p~dV~Ip--~G~t~-----~~p~~-~~~fq~LgipTkI~kG~I~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~~l~ 188 (317)
T 2zkr_g 118 PCEVTVP--AQNTG-----LGPEK-TSFFQALGITTKISRGTIEILSDVQLIKTGDK-VGASEATLLNMLNISPFSFGLV 188 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEeC--CCCCC-----CCCcc-hHHHHHcCCCeEeeCCeEEEecceEEecCCCC-cCHHHHHHHHHcCCCceeeeee
Confidence 122233 57754 35555 57899999999999998 7788889999999 9999999999999999766655
Q ss_pred eEeecCcEEeecCcccCcchHHHHhhcCCCccccccceeeeeeCCcccCCccccCChHHHHHHHHHHHHHHHHHhhhcCc
Q 036252 155 VEIITPVELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRY 234 (318)
Q Consensus 155 I~i~~d~~v~~~G~~v~~~~A~lL~~L~i~p~~~~l~l~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~lsl~ag~ 234 (318)
|. .+...|...+++. |+|....|.-.+...+.+-..++.++-++|.+.+.-.+.+|+.++.+|+++++|
T Consensus 189 l~-----~~~d~g~~~~~~~------L~i~~e~~~~~~~~~~~~~~~lsl~~~~pt~~s~~~~i~~a~~~~~ala~~~~~ 257 (317)
T 2zkr_g 189 IQ-----QVFDNGSIYNPEV------LDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDY 257 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ee-----EEEecCcccchHh------ccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33 4667777788876 559999999999999999888999999999999999999999999999999998
Q ss_pred c
Q 036252 235 P 235 (318)
Q Consensus 235 p 235 (318)
.
T Consensus 258 ~ 258 (317)
T 2zkr_g 258 T 258 (317)
T ss_dssp -
T ss_pred C
Confidence 4
No 20
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=98.70 E-value=2.4e-08 Score=92.85 Aligned_cols=230 Identities=12% Similarity=0.111 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhccCeEEEEEecCCCchH------------HHHHHHHccCCcEEEEEehHH--HHHHHHhhhhhhCC-c
Q 036252 12 IAYDARLCKLLEEYSQILIVAADNVGSNQ------------LQHIRAGLRDHSIVLMGKNTM--MKRSIRLHAERTGN-R 76 (318)
Q Consensus 12 ~~~v~~l~e~l~~y~~v~iv~~~~v~s~q------------l~~iR~~lr~~~~~~vgKNtL--~~~Al~~~~~~~~~-~ 76 (318)
...+.+||..+++...-+.+-=..+-..- +..|-..|+|..-+.+.+... +++.+.+.....+. .
T Consensus 35 ~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~~l~G~~al~Ft~~dp~~vak~l~~f~~~~~ar~ 114 (284)
T 3a1y_G 35 AYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKP 114 (284)
T ss_dssp HHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSCCCCTTEEEEEESSCHHHHHHHHHHCCCC-----
T ss_pred HHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhhhcCCCEEEEEECCCHHHHHHHHHHhcchhhhhc
Confidence 35678899999887555555333332222 333444577776777775433 33445443211110 0
Q ss_pred c-ccccc-ccccCceEEEEecCChhhHHHHHHhccccccccCCC--ccCceEEeCCCCCCCCCCchhhhhhcCCceEEec
Q 036252 77 D-LLNLI-PLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152 (318)
Q Consensus 77 ~-~~~L~-~~l~G~~gliFt~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~ 152 (318)
| +..-. -.-.|++ ...|.++...|.+...|.-...|. +..+..++.+|.. ++|++...|+.|||...--+
T Consensus 115 Gaia~~dv~ip~g~~-----~~~p~~~~~~l~~LgIptki~~g~I~i~~d~~v~~~G~~-l~~~~a~lL~~L~i~~~~~~ 188 (284)
T 3a1y_G 115 GAVVPKDVVVPAGPT-----PLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEV-ITPELANILNALGIQPLEVG 188 (284)
T ss_dssp --------------------------------------------------------------------------CCCCCC
T ss_pred CCccceeEEecCCCC-----CCCCcchHHHHHHCCCCeEEecCeeEeecceEEEecCCC-cCHHHHHHHHHcCCCHHHHH
Confidence 0 00000 0113443 345888899999999999999998 5567788899988 99999999999999887666
Q ss_pred ceeEeecCcEEeecCcccCcchHHHHhhcCCCccccccceeeeeeCCcccCCccccCChHHHHHHHHHHHHHHHHHhhhc
Q 036252 153 GTVEIITPVELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSI 232 (318)
Q Consensus 153 G~I~i~~d~~v~~~G~~v~~~~A~lL~~L~i~p~~~~l~l~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~lsl~a 232 (318)
-.|. .+...|...+++... |.+..+.-.+...+.+...++.+.-++|++.+...+.+|+.++.+|+.++
T Consensus 189 l~i~-----~~~~~~~~~~~~vl~------i~~e~~~~~~~~a~~~a~~lsl~~~~pt~~s~~~~i~ka~~~~~ala~~~ 257 (284)
T 3a1y_G 189 LDVL-----AVYEDGIVYTPDVLA------IDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEA 257 (284)
T ss_dssp CEEE-----EEEETTEEECHHHHS------CCHHHHHHHHHHHHHHHHHHHHHHTCCCTTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-----HHhhccccCCHHHcc------CCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 5533 466778778876644 88888888888888887778888889999999999999999999999999
Q ss_pred CcccCCCChhHHHHHHHhhhhhhhhc
Q 036252 233 RYPTIAAAPHFFINGYKNVLSFAVAT 258 (318)
Q Consensus 233 g~pt~~s~p~~i~~a~~~~~al~~~~ 258 (318)
+|.++++++.++.+|+.++++|+...
T Consensus 258 ~~~~~~~~~~~~~ka~~~~~~l~~~~ 283 (284)
T 3a1y_G 258 GYITKETIQDIIGRAFRAMLLLAQQL 283 (284)
T ss_dssp TCCCTTTHHHHHHHHHHHHHHHHTTC
T ss_pred CCCChhhHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999988543
No 21
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=96.56 E-value=0.00089 Score=48.92 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=41.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHhhhcCcccCCCChhHHHHHHHhhhhhhhhccccccchhcHHHHhcCcchhh
Q 036252 208 DLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFA 279 (318)
Q Consensus 208 ~it~e~~~~~~~~a~~~~~~lsl~ag~pt~~s~p~~i~~a~~~~~al~~~~~~~~~~~~~ik~ll~~~~a~~ 279 (318)
.||.+++. ++..++|+.+++.||.+|++++.+ ++|+++|.|+++++
T Consensus 22 ~~ta~~I~-----------~il~AaGveve~~~~~lf~~aL~g---------------k~I~elI~~~g~g~ 67 (69)
T 2lbf_A 22 TVTEDKIN-----------ALIKAAGVNVEPFWPGLFAKALAN---------------VNIGSLICNVGAGG 67 (69)
T ss_dssp CCCHHHHH-----------HHHHHHTCCCCTHHHHHHHHHTTT---------------SCGGGGGTTTTCCC
T ss_pred CCCHHHHH-----------HHHHHcCCCccHHHHHHHHHHHCC---------------CCHHHHHHhccCCC
Confidence 78888877 899999999999999999999988 78999999987643
No 22
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=92.87 E-value=0.041 Score=38.61 Aligned_cols=41 Identities=7% Similarity=0.205 Sum_probs=37.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHhhhcCcccCCCChhHHHHHHHhhhhhhhhccccccchhcHHHHhcC
Q 036252 208 DLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVLSFAVATEYSFSQADKVKEYLKD 274 (318)
Q Consensus 208 ~it~e~~~~~~~~a~~~~~~lsl~ag~pt~~s~p~~i~~a~~~~~al~~~~~~~~~~~~~ik~ll~~ 274 (318)
+||.+++. ++..++|..+++.||.+|++++.+ ++|+++|+|
T Consensus 16 ~~t~~~I~-----------~il~aaGveve~~~~~~~~~~L~g---------------k~i~elI~~ 56 (58)
T 3a1y_A 16 EINEENLK-----------AVLQAAGVEPEEARIKALVAALEG---------------VNIDEVIEK 56 (58)
T ss_dssp CCCHHHHH-----------HHHHHTTCCCCHHHHHHHHHHHSS---------------CCHHHHHHH
T ss_pred CCCHHHHH-----------HHHHHcCCCccHHHHHHHHHHHCC---------------CCHHHHHHc
Confidence 78888877 899999999999999999999988 789999964
No 23
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=91.44 E-value=0.16 Score=36.95 Aligned_cols=43 Identities=9% Similarity=0.103 Sum_probs=38.3
Q ss_pred cCChHHHHHHHHHHHHHHHHHhhhcCcccCCCChhHHHHHHHhhhhhhhhccccccchhcHHHHhcCcc
Q 036252 208 DLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPS 276 (318)
Q Consensus 208 ~it~e~~~~~~~~a~~~~~~lsl~ag~pt~~s~p~~i~~a~~~~~al~~~~~~~~~~~~~ik~ll~~~~ 276 (318)
.||.+++. ++..++|+.+++.||.+|++++.+ ++|+++|++..
T Consensus 18 ~~ta~~I~-----------~il~aaGvevd~~~~~~~~~aL~g---------------k~i~elIa~g~ 60 (70)
T 2lbf_B 18 SPSAKDIK-----------KILDSVGIEADDDRLNKVISELNG---------------KNIEDVIAQGI 60 (70)
T ss_dssp SCCHHHHH-----------HHHHTTTCCCCTTHHHHHHHHHSS---------------CCHHHHHTTCS
T ss_pred CCCHHHHH-----------HHHHHcCCCccHHHHHHHHHHHcC---------------CCHHHHHHHHH
Confidence 67888876 899999999999999999999988 78999997654
No 24
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=91.20 E-value=0.32 Score=42.82 Aligned_cols=152 Identities=11% Similarity=0.077 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhccCeEEEEEecCCC-----------chHHHHHHHHccCCcEEEEEehHHHH--HHHHhhhhhhCC-cc
Q 036252 12 IAYDARLCKLLEEYSQILIVAADNVG-----------SNQLQHIRAGLRDHSIVLMGKNTMMK--RSIRLHAERTGN-RD 77 (318)
Q Consensus 12 ~~~v~~l~e~l~~y~~v~iv~~~~v~-----------s~ql~~iR~~lr~~~~~~vgKNtL~~--~Al~~~~~~~~~-~~ 77 (318)
...+.+||..++....+.++.-+=++ ...+.+|-..|+|..-+.+.+..... +.+.+.....+. .|
T Consensus 32 ~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~G 111 (213)
T 3jsy_A 32 APQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVTDMNPFKLYKLLEENKSPAPVRGG 111 (213)
T ss_dssp HHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCSSEEEEEESSCHHHHHHHHHHSCEEECCCTT
T ss_pred HHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcCCeEEEEeCCCHHHHHHHHHHcCCcccccCC
Confidence 35678899999865333332111010 01345555667887778887654433 334332111111 00
Q ss_pred ----cccccccccCceEEEEecCChhhHHHHHHhccccccccCCC--ccCceEEeCCCCCCCCCCchhhhhhcCCceEEe
Q 036252 78 ----LLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKIN 151 (318)
Q Consensus 78 ----~~~L~~~l~G~~gliFt~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~ 151 (318)
.+-..+ .|+|+ ..|..+...|.+...|+....|. |....+++++|.. ++|++...|+.|||...--
T Consensus 112 aiAp~dV~ip--~G~t~-----~~p~~~~~~~q~lgiptki~~G~I~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~ 183 (213)
T 3jsy_A 112 QIAPCDIKVE--KGSTG-----MPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEV-VSPKLAAVLDRLGIKPIKV 183 (213)
T ss_dssp CBCSSCEEEC--SEEEE-----ECSSTHHHHHHHTTCCEEEETTEEEECSCEEEECTTSB-CCHHHHHHHHHTTCCCEEE
T ss_pred CcCCceEEEC--CCCCC-----CCCCccHHHHHHcCCceEeecCeEEEccceEEEecCCC-cCHHHHHHHHHcCCCcEEE
Confidence 111122 47774 47888899999999999999999 7788889999999 9999999999999999877
Q ss_pred cceeEeecCcEEeecCcccCcchHH
Q 036252 152 KGTVEIITPVELIKKGDRVGSSESA 176 (318)
Q Consensus 152 ~G~I~i~~d~~v~~~G~~v~~~~A~ 176 (318)
+-.|. .+...|...+++...
T Consensus 184 ~l~l~-----~~~~~g~i~~~~~L~ 203 (213)
T 3jsy_A 184 GLNIL-----AVYEDGIIYTPDVLK 203 (213)
T ss_dssp SCEEE-----EEEETTEEECHHHHH
T ss_pred EEEEE-----EEEeCCceeCHHHcc
Confidence 76643 466778888887654
No 25
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=33.36 E-value=13 Score=30.45 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=34.7
Q ss_pred CceEEecceeEee-cCcEEe-------ecCcc---cCcchHHHHhhcCCCccccccceeeeee
Q 036252 146 IPTKINKGTVEII-TPVELI-------KKGDR---VGSSESALLSKLAIKPFSYGLIVMSVYE 197 (318)
Q Consensus 146 Iptki~~G~I~i~-~d~~v~-------~~G~~---v~~~~A~lL~~L~i~p~~~~l~l~~~~~ 197 (318)
||-|+.+ .|||. .|++++ .+|+. .+++|+..|++.|.=|.+|...-...++
T Consensus 60 I~GKmRk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~devk~L~k~g~wP~~f~~~~~~~~~ 121 (143)
T 1d7q_A 60 IRGKLRK-KVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFG 121 (143)
T ss_dssp CCSGGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCSSS
T ss_pred eccccee-eEEecCCCEEEEeeccCCCCeEEEEEEeCHHHHHHHHHcCCCChHHhhCcccccc
Confidence 4444444 55542 344444 44554 5799999999999999999887766663
No 26
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=27.58 E-value=68 Score=24.92 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=38.5
Q ss_pred ceEEeCCCCCCCCCCchhhhhhcCCceEE--ecceeEeecCcEEeecCcc--cCcchHHHHhhcCC
Q 036252 122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKI--NKGTVEIITPVELIKKGDR--VGSSESALLSKLAI 183 (318)
Q Consensus 122 ~dVvi~~G~t~~~p~~~~~fq~LgIptki--~~G~I~i~~d~~v~~~G~~--v~~~~A~lL~~L~i 183 (318)
..|.||+|.. ..|+..-.++-.|+|..= .+|-..|. +.|.-+ +. ++++|..+|+.|-=
T Consensus 36 ~~v~ip~g~v-~~~G~~~rl~G~Gmp~~~~~~~GDL~V~--~~V~~P-~~~~ls~~q~~~l~~l~~ 97 (121)
T 1xao_A 36 LKVGIVPGEV-IAPGMRKVIEGKGMPIPKYGGYGNLIIK--FTIKFP-ENHFTSEENLKKLEEILP 97 (121)
T ss_dssp EEEEECTTSC-CCTTCEEEETTCSCC------CCCEEEE--EEEECC-CTTCSCHHHHHHHHHHSC
T ss_pred EEEEeCCCCe-eCCCcEEEECCCCCCCCCCCCCCCEEEE--EEEECC-CCCCCCHHHHHHHHHHcc
Confidence 4678888854 566766667888998532 46887774 334333 34 99999999998753
No 27
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=26.12 E-value=52 Score=25.17 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=37.6
Q ss_pred CceEEeCCCCCCCCCCchhhhhhcCCceEEecceeEeecCcEEeecCcccCcchHHHHhhc
Q 036252 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDRVGSSESALLSKL 181 (318)
Q Consensus 121 ~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d~~v~~~G~~v~~~~A~lL~~L 181 (318)
..+|.||+| ..|+..-.++--|+|..=.+|-..|. +.|.- =+.++++|..+|+.|
T Consensus 39 ~~~v~ip~g---~~~G~~~rl~G~G~p~~~~~GDL~v~--~~V~~-P~~Ls~~q~~~l~~l 93 (109)
T 3i38_A 39 SILLTVPPG---SQAGQRLRIKGKGLVSKTHTGDLFAV--IKIVM-PTKPDEKARELWQQL 93 (109)
T ss_dssp CEEEEECTT---CCTTCEEEETTCSCBCSSCBCCEEEE--EEECC-CSSCCHHHHHHHHHH
T ss_pred CEEEeeCCC---cCcCeEEEECCccCCCCCCCcCEEEE--EEEEC-CCCCCHHHHHHHHHH
Confidence 357899998 56666656778888863246776663 23322 246999999999876
No 28
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=25.19 E-value=62 Score=28.83 Aligned_cols=38 Identities=8% Similarity=0.165 Sum_probs=31.2
Q ss_pred HHHhccCeEEEEEecC--CCchHHHHHHHHccCCcEEEEE
Q 036252 20 KLLEEYSQILIVAADN--VGSNQLQHIRAGLRDHSIVLMG 57 (318)
Q Consensus 20 e~l~~y~~v~iv~~~~--v~s~ql~~iR~~lr~~~~~~vg 57 (318)
+.|++|+.|++.|+.. ++..|++.||+..+.++-+.|.
T Consensus 46 ~~L~~yDvIIl~d~~~~~l~~~~~~~L~~yV~~GGgLi~~ 85 (259)
T 3rht_A 46 ELLAKQDLVILSDYPAERMTAQAIDQLVTMVKAGCGLVML 85 (259)
T ss_dssp HHHHTCSEEEEESCCGGGBCHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHhcCCEEEEcCCccccCCHHHHHHHHHHHHhCCeEEEe
Confidence 5688999999998764 8899999999999976656654
No 29
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=21.97 E-value=1.1e+02 Score=24.31 Aligned_cols=51 Identities=8% Similarity=-0.050 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhc------cCeEEEEEecCCCchHHHHHHHHccCCcEEEEEehHHHHH
Q 036252 13 AYDARLCKLLEE------YSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMKR 64 (318)
Q Consensus 13 ~~v~~l~e~l~~------y~~v~iv~~~~v~s~ql~~iR~~lr~~~~~~vgKNtL~~~ 64 (318)
++.+++++.+++ ...++++|+ |-+.+.-..+...++.+.++.-|=|+-|-.
T Consensus 46 ~~~~~i~~~i~~~~~d~g~GVLiL~Dm-GSp~n~a~~l~~~~~~~v~vI~gvnlpmll 102 (139)
T 3gdw_A 46 TMYEQLRNQVITQKESLNNGILLLTDM-GSLNSFGNMLFEETGIRTKAITMTSTMIVL 102 (139)
T ss_dssp HHHHHHHHHHHTSTGGGTTCEEEEECS-GGGGGHHHHHHHHHCCCEEEECSCCHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCEEEEEeC-CCHHHHHHHHHHhhCCCEEEEeCCCHHHHH
Confidence 456666666654 247999999 888888888888876678888888987754
Done!