BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036254
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By
Molecular Replacement
Length = 227
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 4 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 45
L SY QG N++ KI MTAPV + + P +GPF S + Q P
Sbjct: 91 LNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDV 149
Query: 46 -IKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHL-SVAG 103
I+ V VR F G +SA K + T S + + K+ D+ + AG
Sbjct: 150 FIEDRAEMTVFVRSFDGF---------SSAQKNQEQLLTLASILREDGKVFDEKVYYTAG 200
Query: 104 YNSPFQNENRINKVLL 119
YNSP + NR N+V L
Sbjct: 201 YNSPVKLLNRNNEVWL 216
>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8J|B Chain B, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8K|A Chain A, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|B Chain B, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|C Chain C, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|D Chain D, Crystal Structure Of Human Soul Protein (Hexagonal Form)
Length = 212
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 4 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 45
L SY QG N++ KI MTAPV + + P +GPF S + Q P
Sbjct: 72 LNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDV 130
Query: 46 -IKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHL-SVAG 103
I+ V VR F G +SA K + T S + + K+ D+ + AG
Sbjct: 131 FIEDRAEMTVFVRSFDGF---------SSAQKNQEQLLTLASILREDGKVFDEKVYYTAG 181
Query: 104 YNSPFQNENRINKVLL 119
YNSP + NR N+V L
Sbjct: 182 YNSPVKLLNRNNEVWL 197
>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp
Length = 192
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 30/139 (21%)
Query: 1 MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPF---------CNSQLQAHP------ 45
M + Y G ND+ + MT PV + P+ +G +Q Q P
Sbjct: 61 MPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDE 120
Query: 46 -IKLPKHKYVVV--RRFGGLMDDTSISTQASALKKSFKNS--TWESAIIFNYKISDDHLS 100
+K+ + + + V +FGG + A+ L+ + + + T++ + +
Sbjct: 121 SVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGDVYY---------- 170
Query: 101 VAGYNSPFQNENRINKVLL 119
AGY+ P + R N+V L
Sbjct: 171 CAGYDPPMKPYGRRNEVWL 189
>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp
Length = 195
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 30/139 (21%)
Query: 1 MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCN---------SQLQAHP------ 45
M + Y G ND+ + MT PV + P+ +G +Q Q P
Sbjct: 64 MPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDE 123
Query: 46 -IKLPKHKYVVV--RRFGGLMDDTSISTQASALKKSFKNS--TWESAIIFNYKISDDHLS 100
+K+ + + + V +FGG + A+ L+ + + + T++ + +
Sbjct: 124 SVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGDVYY---------- 173
Query: 101 VAGYNSPFQNENRINKVLL 119
AGY+ P + R N+V L
Sbjct: 174 CAGYDPPMKPYGRRNEVWL 192
>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp
Length = 195
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 30/139 (21%)
Query: 1 MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCN---------SQLQAHP------ 45
M + Y G ND+ + MT PV + P+ +G +Q Q P
Sbjct: 64 MPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDE 123
Query: 46 -IKLPKHKYVVV--RRFGGLMDDTSISTQASALKKSFKNS--TWESAIIFNYKISDDHLS 100
+K+ + + + V +FGG + A+ L+ + + + T++ + +
Sbjct: 124 SVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGDVYY---------- 173
Query: 101 VAGYNSPFQNENRINKVLL 119
AGY+ P + R N+V L
Sbjct: 174 CAGYDPPMKPYGRRNEVWL 192
>pdb|4AYZ|A Chain A, X-Ray Structure Of Human Soul
Length = 208
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 59/139 (42%), Gaps = 36/139 (25%)
Query: 4 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 45
L SY QG N++ KI TAPV + + P +GPF S + Q P
Sbjct: 72 LNSYIQGKNEKEXKIKXTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDV 130
Query: 46 -IKLPKHKYVVVRRFGGL----MDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLS 100
I+ V VR F G + + T AS L++ K +F+ K+
Sbjct: 131 FIEDRAEXTVFVRSFDGFSSAQKNQEQLLTLASILREDGK--------VFDEKV----YY 178
Query: 101 VAGYNSPFQNENRINKVLL 119
AGYNSP + NR N+V L
Sbjct: 179 TAGYNSPVKLLNRNNEVWL 197
>pdb|4AYZ|B Chain B, X-Ray Structure Of Human Soul
Length = 208
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 60/139 (43%), Gaps = 36/139 (25%)
Query: 4 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 45
L SY QG N++ KI TAPV + + P +GPF +S + Q P
Sbjct: 72 LNSYIQGKNEKEXKIKXTAPVTSYVEPG-SGPFESSTITISLYIPSEQQFDPPRPLESDV 130
Query: 46 -IKLPKHKYVVVRRFGGL----MDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLS 100
I+ V VR F G + + T AS L++ K +F+ K+
Sbjct: 131 FIEDRAEXTVFVRSFDGFSSAQKNQEQLLTLASILREDGK--------VFDEKV----YY 178
Query: 101 VAGYNSPFQNENRINKVLL 119
AGYNSP + NR N+V L
Sbjct: 179 TAGYNSPVKLLNRNNEVWL 197
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 21/116 (18%)
Query: 27 NIIPSING---------PFCNSQLQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKK 77
NIIPS G P +L ++P VV DTSI +ALK+
Sbjct: 220 NIIPSTTGAAKAVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKR 279
Query: 78 SFK-------NSTWESAIIFNYKISDDHLSVAGYNSPFQN----ENRINKVLLWFD 122
+ K T E + ++ ISD S+ + QN E R K++ W+D
Sbjct: 280 ASKTYMKNILGYTDEELVSADF-ISDSRSSIYDSKATLQNNLPNERRFFKIVSWYD 334
>pdb|1AKO|A Chain A, Exonuclease Iii From Escherichia Coli
Length = 268
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 8 FQGNNDQSAKITMTA--PVLTNIIPSINGPFCNSQLQAHPIKLP 49
F G+++++ + + A P L + ING F + + HPIK P
Sbjct: 80 FPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFP 123
>pdb|3QLI|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLI|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLK|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLK|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
Length = 455
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 1 MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPI 46
+RG Y+ G + + T ++ IIP I+GP ++ H I
Sbjct: 367 VRGAYASKGGRSIIATPSTAAKGTVSRIIPRIDGPVTTPRIDTHYI 412
>pdb|3S8D|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3S8D|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
Length = 455
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 1 MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPI 46
+RG Y+ G + + T ++ IIP I+GP ++ H I
Sbjct: 367 VRGAYASKGGRSIIATPSTAAKGTVSRIIPRIDGPVTTPRIDTHYI 412
>pdb|1QPS|A Chain A, The Crystal Structure Of A Post-Reactive Cognate Dna-Eco
Ri Complex At 2.50 A In The Presence Of Mn2+ Ion
Length = 261
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 7 YFQGNNDQSAKITMTAPVLTNIIPSINGPFCN--SQLQAHPIKLPKHKYVVVRRFGGLMD 64
+ +G+N + I++T P + N N +L A +P + + + +F
Sbjct: 152 FLEGSNFLTENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSNLCINKFVN-HK 210
Query: 65 DTSISTQASALKKSFKNSTWESAIIFN--YKISDDHLSVAG 103
D SI QA+++ W+S I+F + IS L V G
Sbjct: 211 DKSIMLQAASIYTQGDGREWDSKIMFEIMFDISTTSLRVLG 251
>pdb|1QRI|A Chain A, X-Ray Structure Of The Dna-Eco Ri Endonuclease Complexes
With An E144d Mutation At 2.7 A
Length = 261
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 7 YFQGNNDQSAKITMTAPVLTNIIPSINGPFCN--SQLQAHPIKLPKHKYVVVRRFGGLMD 64
+ +G+N + I++T P + N N +L A +P + + + +F
Sbjct: 152 FLEGSNFLTENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSNLCINKFVN-HK 210
Query: 65 DTSISTQASALKKSFKNSTWESAIIFN--YKISDDHLSVAG 103
D SI QA+++ W+S I+F + IS L V G
Sbjct: 211 DKSIMLQAASIYTQGDGREWDSKIMFEIMFDISTTSLRVLG 251
>pdb|1QRH|A Chain A, X-Ray Structure Of The Dna-Eco Ri Endonuclease Complexes
With An R145k Mutation At 2.7 A
Length = 261
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 7 YFQGNNDQSAKITMTAPVLTNIIPSINGPFCN--SQLQAHPIKLPKHKYVVVRRFGGLMD 64
+ +G+N + I++T P + N N +L A +P + + + +F
Sbjct: 152 FLEGSNFLTENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSNLCINKFVN-HK 210
Query: 65 DTSISTQASALKKSFKNSTWESAIIFN--YKISDDHLSVAG 103
D SI QA+++ W+S I+F + IS L V G
Sbjct: 211 DKSIMLQAASIYTQGDGREWDSKIMFEIMFDISTTSLRVLG 251
>pdb|1ERI|A Chain A, X-Ray Structure Of The Dna-Eco Ri Endonuclease-Dna
Recognition Complex: The Recognition Network And The
Integration Of Recognition And Cleavage
pdb|1CKQ|A Chain A, Pre-Transition State Eco Ri EndonucleaseCOGNATE DNA
(Tcgcgaattcgcg) Complex
pdb|1CL8|A Chain A, A Pre-Transition State Eco Ri EndonucleaseCOGNATE DNA
(Tcgcgapttcgcg) Complex With Dna Base Analog Purine (P)
pdb|1QC9|A Chain A, The Crystallographic Structure Of Restriction Endonuclease
Eco Ri At 3.3 A In The Absense Of Dna
pdb|1QC9|B Chain B, The Crystallographic Structure Of Restriction Endonuclease
Eco Ri At 3.3 A In The Absense Of Dna
pdb|1QC9|C Chain C, The Crystallographic Structure Of Restriction Endonuclease
Eco Ri At 3.3 A In The Absense Of Dna
Length = 276
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 7 YFQGNNDQSAKITMTAPVLTNIIPSINGPFCN--SQLQAHPIKLPKHKYVVVRRFGGLMD 64
+ +G+N + I++T P + N N +L A +P + + + +F
Sbjct: 167 FLEGSNFLTENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSNLCINKFVN-HK 225
Query: 65 DTSISTQASALKKSFKNSTWESAIIFN--YKISDDHLSVAG 103
D SI QA+++ W+S I+F + IS L V G
Sbjct: 226 DKSIMLQAASIYTQGDGREWDSKIMFEIMFDISTTSLRVLG 266
>pdb|2OXV|A Chain A, Structure Of The A138t Promiscuous Mutant Of The Ecori
Restriction Endonuclease Bound To Its Cognate
Recognition Site
Length = 277
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 7 YFQGNNDQSAKITMTAPVLTNIIPSINGPFCN--SQLQAHPIKLPKHKYVVVRRFGGLMD 64
+ +G+N + I++T P + N N +L A +P + + + +F
Sbjct: 168 FLEGSNFLTENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSNLCINKFVN-HK 226
Query: 65 DTSISTQASALKKSFKNSTWESAIIFN--YKISDDHLSVAG 103
D SI QA+++ W+S I+F + IS L V G
Sbjct: 227 DKSIMLQAASIYTQGDGREWDSKIMFEIMFDISTTSLRVLG 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,584,505
Number of Sequences: 62578
Number of extensions: 123587
Number of successful extensions: 237
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 18
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)