Query 036254
Match_columns 122
No_of_seqs 105 out of 432
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 18:45:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8j_A Heme-binding protein 2; 100.0 3.4E-39 1.1E-43 242.5 12.3 112 1-122 69-200 (212)
2 4b0y_A Heme-binding protein 2; 100.0 5.9E-39 2E-43 243.3 11.1 112 1-122 88-219 (227)
3 2gov_A P22HBP, heme-binding pr 100.0 1.3E-38 4.5E-43 236.5 10.5 111 1-121 64-194 (195)
4 3e0h_A Uncharacterized protein 96.6 0.012 4E-07 40.0 7.8 69 41-122 85-156 (158)
5 1jyh_A DNA gyrase inhibitory p 96.2 0.0053 1.8E-07 40.3 4.2 69 41-121 82-152 (157)
6 3lur_A Putative bacterial tran 92.4 1.7 5.7E-05 29.3 9.5 71 41-122 85-157 (158)
7 1d5y_A ROB transcription facto 89.4 1.7 5.9E-05 31.8 7.8 69 41-121 210-285 (292)
8 3gk6_A Integron cassette prote 86.7 6 0.0002 27.2 9.0 66 41-122 103-170 (170)
9 3b49_A LIN2189 protein; BIG 86 86.7 2.7 9.3E-05 29.8 7.2 71 41-122 136-211 (211)
10 1r8e_A Multidrug-efflux transp 85.3 3.9 0.00013 29.9 7.6 69 42-122 206-277 (278)
11 3e0h_A Uncharacterized protein 83.2 7.7 0.00026 25.6 8.0 43 42-85 8-52 (158)
12 3b49_A LIN2189 protein; BIG 86 81.3 4.7 0.00016 28.6 6.4 45 40-85 22-72 (211)
13 1jyh_A DNA gyrase inhibitory p 69.9 16 0.00055 22.9 6.2 41 42-84 2-42 (157)
14 1r8e_A Multidrug-efflux transp 64.9 9.1 0.00031 27.9 4.6 69 41-121 122-194 (278)
15 3ml6_A Chimeric complex betwee 48.7 22 0.00076 28.0 4.6 80 42-121 22-127 (385)
16 4fu0_A D-alanine--D-alanine li 42.4 27 0.00094 26.4 4.1 34 51-85 3-37 (357)
17 2q3l_A Uncharacterized protein 39.9 61 0.0021 21.0 5.1 41 42-83 10-50 (126)
18 2ook_A Hypothetical protein; s 31.9 1E+02 0.0035 19.9 5.2 39 42-81 10-48 (127)
19 3kan_A D-dopachrome tautomeras 26.0 1.2E+02 0.0042 19.1 4.7 50 48-107 54-103 (117)
20 1d5y_A ROB transcription facto 25.7 1.8E+02 0.0062 20.6 8.0 41 41-82 124-168 (292)
21 3kh7_A Thiol:disulfide interch 21.6 1.6E+02 0.0056 19.2 4.8 39 41-82 134-172 (176)
22 2jkg_A Profilin; proline-rich 20.8 2.2E+02 0.0074 20.2 5.4 44 41-85 127-172 (179)
23 3djh_A Macrophage migration in 20.7 1.6E+02 0.0056 18.3 4.9 49 48-107 54-102 (114)
24 2ww6_A Fibritin, T4 fibritin; 20.2 45 0.0015 16.4 1.2 19 45-63 3-21 (27)
No 1
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=100.00 E-value=3.4e-39 Score=242.53 Aligned_cols=112 Identities=31% Similarity=0.423 Sum_probs=100.9
Q ss_pred ChhhhccccCCCCCCCccCcCcceeEEeecCCCCCc---------ccc-----------CCceeEEeCCCCcEEEEEEec
Q 036254 1 MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPF---------CNS-----------QLQAHPIKLPKHKYVVVRRFG 60 (122)
Q Consensus 1 F~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~f---------~~~-----------~~~V~i~~~p~~~~v~V~~F~ 60 (122)
|++|++||+|+|.++.||+||+||++++.++ ++++ .+| .++|+|+++| +++|||++|+
T Consensus 69 F~~L~~YI~G~N~~~~kI~MTaPV~t~~~p~-~~~~~~~~~tvsF~lP~~~q~~pP~P~d~~V~i~~~p-~~~vav~~F~ 146 (212)
T 3r8j_A 69 FTKLNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRA-EMTVFVRSFD 146 (212)
T ss_dssp HHHHHHHHTTCBTTCCCCCCBSCEEEEEECT-TSTTSCEEEEEEEECCHHHHSSCCCBSSTTEEEEEEC-CEEEEEEEES
T ss_pred HHHHHHHhhcCCCCCCccccccCEEEEEecC-CCcccCceEEEEEEcChHHccCCCCCCCCceEEEEeC-CEEEEEEEeC
Confidence 8999999999999999999999999999776 4433 222 1799999999 9999999999
Q ss_pred cccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCCCCCCCCeeeEEEEeC
Q 036254 61 GLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNENRINKVLLWFD 122 (122)
Q Consensus 61 G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVwi~~~ 122 (122)
|++++.++.+++++|+++|+++|+. +..+.|++|+|||||++++|||||||.++
T Consensus 147 G~~~~~~~~~~~~~L~~~L~~~g~~--------~~~~~y~~A~Yd~P~t~~~RrNEVwi~~~ 200 (212)
T 3r8j_A 147 GFSSAQKNQEQLLTLASILREDGKV--------FDEKVYYTAGYNSPVKLLNRNNEVWLIQK 200 (212)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCC--------BCSSCEEEEESSSSSCCSSSCEEEEEEBC
T ss_pred CcCCHHHHHHHHHHHHHHHHhCCCc--------cCCCcEEEEEeCCCCCcCCceeEEEEEeC
Confidence 9999999999999999999999865 56778999999999998899999999864
No 2
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.9e-39 Score=243.32 Aligned_cols=112 Identities=30% Similarity=0.403 Sum_probs=97.0
Q ss_pred ChhhhccccCCCCCCCccCcCcceeEEeecCCCCC---------ccccC-----------CceeEEeCCCCcEEEEEEec
Q 036254 1 MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGP---------FCNSQ-----------LQAHPIKLPKHKYVVVRRFG 60 (122)
Q Consensus 1 F~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~---------f~~~~-----------~~V~i~~~p~~~~v~V~~F~ 60 (122)
|++|++||+|+|.++.||+||+||++++.++ +++ |.+|. ++|+|+++| +++||||+|+
T Consensus 88 F~~L~~YI~G~N~~~~kI~MTaPV~t~~~p~-~~~~~~~~~tvsF~lP~~~q~~pP~P~D~~V~i~~~p-~~~vaVr~Fs 165 (227)
T 4b0y_A 88 FTKLNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRA-EMTVFVRSFD 165 (227)
T ss_dssp HHHHHHHHHTCBTTCCCCCCBSCEEEEEECC-C--CCCEEEEEEEECCGGGSSSCCCBSSSSEEEEEEC-CEEEEEEEES
T ss_pred HHHHHHHhhcCCCCCCccccccCEEEEEecC-CCcccCceEEEEEEcChhhccCCCCCCCCceEEEEeC-CEEEEEEEec
Confidence 8999999999999999999999999998776 433 22221 799999999 9999999999
Q ss_pred cccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCCCCCCCCeeeEEEEeC
Q 036254 61 GLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNENRINKVLLWFD 122 (122)
Q Consensus 61 G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVwi~~~ 122 (122)
|++++.++.+++++|+++|+++|+. +..+.|++|+|||||++++|||||||.+.
T Consensus 166 G~~~~~~~~~~~~~L~~~L~~~g~~--------~~~~~y~~A~Yd~P~t~~~RrNEVwi~~~ 219 (227)
T 4b0y_A 166 GFSSAQKNQEQLLTLASILREDGKV--------FDEKVYYTAGYNSPVKLLNRNNEVWLIQK 219 (227)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTCC--------BCSSCEEEEECC---CCCSSCEEEEEEBC
T ss_pred CcCCHHHHHHHHHHHHHHHHhCCCc--------cCCCcEEEEEeCCCCCcCCceeEEEEEEC
Confidence 9999999999999999999999865 56778999999999998899999999863
No 3
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A
Probab=100.00 E-value=1.3e-38 Score=236.46 Aligned_cols=111 Identities=23% Similarity=0.331 Sum_probs=99.7
Q ss_pred ChhhhccccCCCCCCCccCcCcceeEEeecCCCCCc---------cccC-----------CceeEEeCCCCcEEEEEEec
Q 036254 1 MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPF---------CNSQ-----------LQAHPIKLPKHKYVVVRRFG 60 (122)
Q Consensus 1 F~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~f---------~~~~-----------~~V~i~~~p~~~~v~V~~F~ 60 (122)
|++|++||+|+|..+.||+||+||++++.++ ++++ .+|. ++|+|+++| +++|||++|+
T Consensus 64 F~~L~~YI~G~N~~~~kI~MTaPV~~~~~p~-~~~~~~~~~tvsF~lP~~~~~~pP~P~d~~V~i~~~p-~~~vav~~F~ 141 (195)
T 2gov_A 64 MPKIMKYVGGTNDKGVGMGMTVPVSFAVFPN-EDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEERE-GITVYSTQFG 141 (195)
T ss_dssp HHHHHHHHHTCBTTCCCCCCCCCEEEEEEEC-TTSCEEEEEEEEECCCHHHHHSCCCBCSSSCEEEECC-SCEEEEEEEE
T ss_pred HHHHHHHhccCCCCCCCcccccCEEEEEcCC-CCCCcCceEEEEEEcchhcccCCCCCCCCceEEEEeC-CeEEEEEEEC
Confidence 8999999999999999999999999998776 4433 2331 799999999 9999999999
Q ss_pred cccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCCCCCCCCeeeEEEEe
Q 036254 61 GLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNENRINKVLLWF 121 (122)
Q Consensus 61 G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVwi~~ 121 (122)
|++++..+.+++++|+++|+++|+. +..+.|++|+|||||++++|||||||..
T Consensus 142 G~~~~~~~~~~~~~L~~~L~~~g~~--------~~~~~~~~a~Yn~P~~~~~RrNEV~i~~ 194 (195)
T 2gov_A 142 GYAKEADYVAHATQLRTTLEGTPAT--------YQGDVYYCAGYDPPMKPYGRRNEVWLVK 194 (195)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTSSCC--------EEEEEEEEEESSCCSSSSCCEEEEEEEE
T ss_pred CccCHHHHHHHHHHHHHHHHHCCCc--------ccCCcEEEEEeCCCCCcCCceeEEEEEe
Confidence 9999999999999999999999854 4567799999999999999999999975
No 4
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=96.57 E-value=0.012 Score=40.01 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=52.4
Q ss_pred CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEE-eCCCCC-CC-CCeeeE
Q 036254 41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAG-YNSPFQ-NE-NRINKV 117 (122)
Q Consensus 41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~-Yd~P~~-~~-~R~NEV 117 (122)
.+|.+.++| +.++++.++.|-..+ +.+--++|.++|.++|+.. . + ..+-. +|.|.. .. ..+.||
T Consensus 85 ~~~~~~~ip-~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~~--------~-~-~~~E~Y~~~p~~~~~~~~~tei 151 (158)
T 3e0h_A 85 GRVVTGLTP-SGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFDL--------S-G-EAYEIYLDNPAETAPDQLRTRV 151 (158)
T ss_dssp TTBEEEECC-CEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCCE--------E-E-EEEEEECSCTTSSCGGGCEEEE
T ss_pred CceEEEEeC-CEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCCc--------C-C-CEEEEEeCCCCCCCHHHhEEEE
Confidence 579999999 999999999996553 6778888999999998652 1 2 23334 467764 33 779999
Q ss_pred EEEeC
Q 036254 118 LLWFD 122 (122)
Q Consensus 118 wi~~~ 122 (122)
|++|.
T Consensus 152 ~ipv~ 156 (158)
T 3e0h_A 152 SLMLH 156 (158)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99874
No 5
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=96.21 E-value=0.0053 Score=40.32 Aligned_cols=69 Identities=7% Similarity=-0.082 Sum_probs=49.2
Q ss_pred CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHH-HHhhcCCCchheeccccccCCceEEEEeC-CCCCCCCCeeeEE
Q 036254 41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALK-KSFKNSTWESAIIFNYKISDDHLSVAGYN-SPFQNENRINKVL 118 (122)
Q Consensus 41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd-~P~~~~~R~NEVw 118 (122)
..+.+.++| +.+.+|..|.|... .+.+--.+|. ++|.++|+. ..+.+.+-.|. .|..+...+.|||
T Consensus 82 ~~~~~~~ip-~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~---------~~~~~~~E~Y~~~~~~~~~~~tei~ 149 (157)
T 1jyh_A 82 EGVILTEIT-GGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYE---------MLPKPCFEVYLNNGAEDGYWDIEMY 149 (157)
T ss_dssp TTCEEEEEC-CEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEE---------ECSSCEEEEECSCHHHHSSEEEEEE
T ss_pred CCeEEEEeC-CCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCc---------cCCCceEEEecCCCCCcccEEEEEE
Confidence 468889999 99999999999763 3556677775 999998854 13335566773 2223335677999
Q ss_pred EEe
Q 036254 119 LWF 121 (122)
Q Consensus 119 i~~ 121 (122)
|+|
T Consensus 150 ipi 152 (157)
T 1jyh_A 150 VAV 152 (157)
T ss_dssp EEE
T ss_pred EEe
Confidence 987
No 6
>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}
Probab=92.42 E-value=1.7 Score=29.33 Aligned_cols=71 Identities=10% Similarity=0.051 Sum_probs=49.0
Q ss_pred CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHH-HHhhcCCCchheeccccccCCceEEEEeCCCCCC-CCCeeeEE
Q 036254 41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALK-KSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQN-ENRINKVL 118 (122)
Q Consensus 41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~~~-~~R~NEVw 118 (122)
..+...++| +.+.||-++.|-..+. +.+--+.+. ++|-..|.. ....+-+-.|+.+-.. ..-.-|||
T Consensus 85 ~~~~~~~ip-~g~Yavf~~~G~~~~~-i~~~~~~i~~~wlp~sgy~---------~~~~p~fE~Y~~~~~~~~~~~~ei~ 153 (158)
T 3lur_A 85 AKYDVITLA-SSKYMVFEAQGAVPKA-VQQKMEEVHHYIHQYQANT---------VKSAPFFELYQDGDTTSEKYITEIW 153 (158)
T ss_dssp GGSEEEEEC-CEEEEEEEEESSTTHH-HHHHHHHHHHHHHHHCTTT---------BCSSCEEEEECSSCTTSTTCEEEEE
T ss_pred CCcEEEEEC-CceEEEEEEecChHHH-HHHHHHHHHHhhcccCCCe---------eCCCccEEEECCCCCCCcceEEEEE
Confidence 468889999 9999999999975543 445555554 589888764 2334566678764322 25567999
Q ss_pred EEeC
Q 036254 119 LWFD 122 (122)
Q Consensus 119 i~~~ 122 (122)
|+|.
T Consensus 154 iPI~ 157 (158)
T 3lur_A 154 MPVK 157 (158)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9974
No 7
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=89.43 E-value=1.7 Score=31.82 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=46.5
Q ss_pred CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHH-HHhhcCCCchheeccccccCCceEEEEeC----CCCCCC--CC
Q 036254 41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALK-KSFKNSTWESAIIFNYKISDDHLSVAGYN----SPFQNE--NR 113 (122)
Q Consensus 41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd----~P~~~~--~R 113 (122)
..+...++| +.+.||.++.|- .+.+.+--..|. +||.+.|... .+.+-+-.|. +|.... .=
T Consensus 210 ~~~~~~~iP-~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~~---------~~~p~~E~Y~~~~~~~~~~~~~~~ 277 (292)
T 1d5y_A 210 LTGHPVMLQ-GGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLTR---------RKGQDIERYYPAEDAKAGDRPINL 277 (292)
T ss_dssp TTCEEEEEC-CEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCEE---------CSSCEEEEECGGGC----CCSCEE
T ss_pred CcceEEEEC-CCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCcc---------CCCCcEEEEeeccccCCCCCCCce
Confidence 468889999 999999999994 456777788886 8999988641 2233445665 332222 22
Q ss_pred eeeEEEEe
Q 036254 114 INKVLLWF 121 (122)
Q Consensus 114 ~NEVwi~~ 121 (122)
.-||||+|
T Consensus 278 ~tEI~iPI 285 (292)
T 1d5y_A 278 RCELLIPI 285 (292)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 45999987
No 8
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=86.66 E-value=6 Score=27.18 Aligned_cols=66 Identities=11% Similarity=0.015 Sum_probs=46.2
Q ss_pred CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCC--CchheeccccccCCceEEEEeCCCCCCCCCeeeEE
Q 036254 41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNST--WESAIIFNYKISDDHLSVAGYNSPFQNENRINKVL 118 (122)
Q Consensus 41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g--~~~~i~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVw 118 (122)
..+...++| +.+.||-++.|-..+ .+.+--+.+..+|-..| .. ....+-+-.|+..- .-|||
T Consensus 103 ~g~~~~~IP-~g~YAVF~~~G~~p~-~i~~~w~~I~~WlP~sg~~y~---------~~~~pdfE~Y~~~~-----~~eI~ 166 (170)
T 3gk6_A 103 SESVKTKVS-SGKYVTFSATGEMPQ-VVIDLWNEVWNYFASEHCPHK---------RAYTTDFEYYKSAN-----TVEIS 166 (170)
T ss_dssp TTCEEEEEC-CEEEEEEEEESSTTH-HHHHHHHHHHHHHC---CCCC---------BCCSEEEEECCSSS-----EEEEE
T ss_pred CCcEEEEEC-CCCEEEEEecCCCHH-HHHHHHHHHHHhhhhcCCcce---------ecCcCCEEEECCCC-----eEEEE
Confidence 468899999 999999999995544 56666677777998887 54 23455666786541 77999
Q ss_pred EEeC
Q 036254 119 LWFD 122 (122)
Q Consensus 119 i~~~ 122 (122)
|+|.
T Consensus 167 IpI~ 170 (170)
T 3gk6_A 167 IAVR 170 (170)
T ss_dssp EEBC
T ss_pred EEEC
Confidence 9874
No 9
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=86.66 E-value=2.7 Score=29.82 Aligned_cols=71 Identities=8% Similarity=0.036 Sum_probs=49.1
Q ss_pred CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCCCchheeccccccC--CceEEEEe-CCCCC-CC-CCee
Q 036254 41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISD--DHLSVAGY-NSPFQ-NE-NRIN 115 (122)
Q Consensus 41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~--~~~~~A~Y-d~P~~-~~-~R~N 115 (122)
..|.+.++| +..+++.++-|-.. ...+-..+|.++|.++|+.. .. +...+-.| +.|.. .. .-+=
T Consensus 136 ~~v~~~~ip-~g~~a~~~h~G~y~--~~~~~~~~l~~wl~~~g~~~--------~~~~~~~~~EiY~~dp~~~~~~~~~t 204 (211)
T 3b49_A 136 SRVKLVRFE-EGECVQMMHVGPFS--EEVHTVAEMHQFMETEGLRN--------DTGAIRKHHEIYLSDPRKANPEKMKT 204 (211)
T ss_dssp TTCEEEEEE-EEEEEEEEEESCGG--GHHHHHHHHHHHHHHHTCCB--------CBTTTBCEEEEECSCTTTSCGGGCEE
T ss_pred ccceEEEeC-CceEEEEEEEcchh--hHHHHHHHHHHHHHHCCCcc--------ccCCCCcEEEEEeCCCCCCChHHeEE
Confidence 469999999 99999999998655 35567788889999998621 11 13344455 56653 33 4467
Q ss_pred eEEEEeC
Q 036254 116 KVLLWFD 122 (122)
Q Consensus 116 EVwi~~~ 122 (122)
|||++|.
T Consensus 205 ei~ipV~ 211 (211)
T 3b49_A 205 ILRLPVS 211 (211)
T ss_dssp EEEEEBC
T ss_pred EEEEEeC
Confidence 8998873
No 10
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=85.31 E-value=3.9 Score=29.88 Aligned_cols=69 Identities=4% Similarity=-0.072 Sum_probs=46.9
Q ss_pred ceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCCCCC--C-CCeeeEE
Q 036254 42 QAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQN--E-NRINKVL 118 (122)
Q Consensus 42 ~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~~~--~-~R~NEVw 118 (122)
.+.+.++| +..+++..+.|-. +.+.+-...|.++|.++|+.. .+..+---++.|+.. + .-.-|||
T Consensus 206 ~~~~~~lp-~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~~---------~g~~~E~y~~~~~~~~~~~~~~teI~ 273 (278)
T 1r8e_A 206 DMEITTIP-KGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLTV---------VSDVYELIIPIHYSPKKQEEYRVEMK 273 (278)
T ss_dssp TSEEEEEC-SEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCCE---------EEEEEEEEEESCCCSSSCCCEEEEEE
T ss_pred CceEeecC-CceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCcc---------CCCeEEEEeecccccCChhheEEEEE
Confidence 47888999 9899999999954 345667788889999998652 222222223355542 2 4467999
Q ss_pred EEeC
Q 036254 119 LWFD 122 (122)
Q Consensus 119 i~~~ 122 (122)
++|.
T Consensus 274 iPv~ 277 (278)
T 1r8e_A 274 IRIA 277 (278)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9874
No 11
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=83.25 E-value=7.7 Score=25.56 Aligned_cols=43 Identities=7% Similarity=-0.014 Sum_probs=32.2
Q ss_pred ceeEEeCCCCcEEEEEEeccccCh--hHHHHHHHHHHHHhhcCCCc
Q 036254 42 QAHPIKLPKHKYVVVRRFGGLMDD--TSISTQASALKKSFKNSTWE 85 (122)
Q Consensus 42 ~V~i~~~p~~~~v~V~~F~G~~~~--~~~~~~~~~L~~~L~~~g~~ 85 (122)
+|+|+++| +.+|+..+..|...+ ..+.+--++|.+++..+|+.
T Consensus 8 ~v~I~~~p-~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~ 52 (158)
T 3e0h_A 8 VCELKELA-PVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKS 52 (158)
T ss_dssp CEEEEEEC-CCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccEEEeeC-CceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 68999999 999999999987422 12335566788888888753
No 12
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=81.31 E-value=4.7 Score=28.57 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=37.3
Q ss_pred CCceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHh------hcCCCc
Q 036254 40 QLQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSF------KNSTWE 85 (122)
Q Consensus 40 ~~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L------~~~g~~ 85 (122)
..+|.|.++| +..++..+..|-+.+..+.+...+|..++ .+.|+.
T Consensus 22 ~~~v~i~~~p-~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~~ 72 (211)
T 3b49_A 22 KRKPERIFVP-EMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGETR 72 (211)
T ss_dssp CSSCEEEEEE-EEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCCT
T ss_pred CCCcEEEEEC-CeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3579999999 99999999888766557788889999998 887754
No 13
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=69.93 E-value=16 Score=22.90 Aligned_cols=41 Identities=7% Similarity=-0.032 Sum_probs=30.4
Q ss_pred ceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCCC
Q 036254 42 QAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTW 84 (122)
Q Consensus 42 ~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g~ 84 (122)
++.|+++| +..++..+..|-.. ..+.+.-++|.+++...++
T Consensus 2 ~~~i~~~~-~~~v~~~~~~g~~~-~~i~~~~~~l~~~~~~~~~ 42 (157)
T 1jyh_A 2 NYEIKQEE-KRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNI 42 (157)
T ss_dssp CCEEEEEC-CEEEEEEEEESCHH-HHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeC-CeEEEEEEEECCch-hhHHHHHHHHHHHHHHcCC
Confidence 57899999 99988888877432 3455666778888877764
No 14
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=64.89 E-value=9.1 Score=27.88 Aligned_cols=69 Identities=9% Similarity=0.039 Sum_probs=40.2
Q ss_pred CceeEEeCCCCcEEEEEEe-ccccChhHH-HHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCCCCCC-CCee-e
Q 036254 41 LQAHPIKLPKHKYVVVRRF-GGLMDDTSI-STQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNE-NRIN-K 116 (122)
Q Consensus 41 ~~V~i~~~p~~~~v~V~~F-~G~~~~~~~-~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~~~~-~R~N-E 116 (122)
.+|.|+++| +..++..+. .|...+ + .+...+|.+++.+.|+. ..+.+.+.-+|++++.. .++. +
T Consensus 122 ~~v~I~~~p-~~~v~~~~~~~~~~~~--i~~~~~~~l~~~~~~~~l~---------~~~~~g~~~~~~~~~~~~~~~~~~ 189 (278)
T 1r8e_A 122 GEVFVLDEE-EIRIIQTEAEGIGPEN--VLNASYSKLKKFIESADGF---------TNNSYGATFSFQPYTSIDEMTYRH 189 (278)
T ss_dssp TCCEEEEEC-CEEEEEEECTTCCTTT--CCGGGGHHHHHHHHHHHSS---------CCCCEEEEECCCCCSCGGGCCCSE
T ss_pred CceEEEEcC-CeEEEEeecCCCChHh--HHHHHHHHHHHHHHHcCCc---------ccCceEEEEEhHHhhcCCCcceeE
Confidence 469999999 999888887 553321 2 23345677888776532 13334343444556543 3332 5
Q ss_pred EEEEe
Q 036254 117 VLLWF 121 (122)
Q Consensus 117 Vwi~~ 121 (122)
+.+.+
T Consensus 190 ~~v~v 194 (278)
T 1r8e_A 190 IFTPV 194 (278)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 65554
No 15
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=48.70 E-value=22 Score=28.00 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=45.1
Q ss_pred ceeEEeCCCCcEEEEEEeccc-cCh--------hHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEE--------e
Q 036254 42 QAHPIKLPKHKYVVVRRFGGL-MDD--------TSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAG--------Y 104 (122)
Q Consensus 42 ~V~i~~~p~~~~v~V~~F~G~-~~~--------~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~--------Y 104 (122)
.|.+.+.--..+.|-..|.|. .-+ -.-+++|..|.+.|-+.|+-..+.....|.++.||.-+ +
T Consensus 22 Gl~i~dr~~~~~~~~~~F~G~elVdWL~~~~~~~~~R~eA~~~g~~Ll~~G~i~hv~~~~~F~d~~~y~f~~~~~~~~~~ 101 (385)
T 3ml6_A 22 GLEVRDRMWLKITIPNAFLGSDVVDWLYHHVEGFPERREARKYASGLLKAGLIRHTVNKITFSEQCYYVFGDLSGGPRPY 101 (385)
T ss_dssp SSCCEEECCSSCCEEEEEEHHHHHHHHHHTCCSCSSHHHHHHHHHHHHHHSSEEESSSCSSCCSSSEEEECCCCC-----
T ss_pred CceeEeeEECcEECCCeEEhHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCcEEEcCCcceecCcceEEeeccccccCcc
Confidence 344444331345566777763 110 12267999999999999986544333335555554221 1
Q ss_pred C---CCC---C---CCCCeeeEEEEe
Q 036254 105 N---SPF---Q---NENRINKVLLWF 121 (122)
Q Consensus 105 d---~P~---~---~~~R~NEVwi~~ 121 (122)
. ||| + +.-++|||.|.+
T Consensus 102 s~~~~~~~~~~~~gi~y~knEi~vdV 127 (385)
T 3ml6_A 102 SPQPPPYHELEFGGSGGSRNELFLDV 127 (385)
T ss_dssp -CCCCCCEEBCSSSBCCCCCEEEEEE
T ss_pred CCCCCCchhccccCCccccceEEEEE
Confidence 1 356 2 236799999876
No 16
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=42.37 E-value=27 Score=26.45 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=26.4
Q ss_pred CcEEEEEEeccccChhHHHHH-HHHHHHHhhcCCCc
Q 036254 51 HKYVVVRRFGGLMDDTSISTQ-ASALKKSFKNSTWE 85 (122)
Q Consensus 51 ~~~v~V~~F~G~~~~~~~~~~-~~~L~~~L~~~g~~ 85 (122)
.++|+|. |||..+|..+.-. +....++|++.|++
T Consensus 3 kkkv~vl-~GG~S~E~evSl~Sa~~v~~aL~~~gy~ 37 (357)
T 4fu0_A 3 NKKIAVI-FGGNSTEYEVSLQSASAVFENINTNKFD 37 (357)
T ss_dssp CEEEEEE-EECSSTTHHHHHHHHHHHHHHSCTTTEE
T ss_pred CCEEEEE-ECCCccchHHHHHHHHHHHHHHhHhCCE
Confidence 4577665 9999999888643 66788899998864
No 17
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=39.85 E-value=61 Score=20.99 Aligned_cols=41 Identities=5% Similarity=0.055 Sum_probs=33.9
Q ss_pred ceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCC
Q 036254 42 QAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNST 83 (122)
Q Consensus 42 ~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g 83 (122)
-+.+...+ +..+.+.+.+|-.+.+++.+-...|.+.|++.+
T Consensus 10 mi~i~~~~-~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~~ 50 (126)
T 2q3l_A 10 AIGIERSQ-DDFYLAFKAVGKLTHEDYEQMTPLLESALAGIK 50 (126)
T ss_dssp EEEEEEET-TEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCC
T ss_pred eEEEEEcC-CCCEEEEEEEeeECHHHHHHHHHHHHHHHHhCC
Confidence 35666677 778889999999999999998888888888765
No 18
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=31.93 E-value=1e+02 Score=19.86 Aligned_cols=39 Identities=8% Similarity=0.092 Sum_probs=32.5
Q ss_pred ceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhc
Q 036254 42 QAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKN 81 (122)
Q Consensus 42 ~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~ 81 (122)
-+.+.... +..+...+.+|-.+.+++.+-...|.+.|++
T Consensus 10 mi~i~~~~-~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~ 48 (127)
T 2ook_A 10 SIGINRIE-SVFFVTLKAIGTLTHEDYLVITPMLEGALSQ 48 (127)
T ss_dssp EEEEEEET-TEEEEEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEcC-CCCEEEEEEeeeECHHHHHHHHHHHHHHHhh
Confidence 35566666 6778899999999999999888888888988
No 19
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=26.05 E-value=1.2e+02 Score=19.14 Aligned_cols=50 Identities=6% Similarity=0.133 Sum_probs=35.9
Q ss_pred CCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCC
Q 036254 48 LPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSP 107 (122)
Q Consensus 48 ~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P 107 (122)
-| ...+=+.+.|+....+.-++.++.|.+.|.+. ++ .+.+..|+..+|.|
T Consensus 54 ~P-~a~~~v~siG~~~~~~~n~~~s~~i~~~l~~~-------Lg--i~~~RiyI~f~d~~ 103 (117)
T 3kan_A 54 EP-CAQLSISSIGVVGTAEDNRSHSAHFFEFLTKE-------LA--LGQDRILIRFFPLE 103 (117)
T ss_dssp SS-CEEEEEEEESSSSSHHHHHHHHHHHHHHHHHH-------HT--CCGGGEEEEEEEEC
T ss_pred Cc-eEEEEEEEecCCCcHHHHHHHHHHHHHHHHHH-------hC--cCcCeEEEEEEEcC
Confidence 57 77777888988655555688889999999876 11 34566777777755
No 20
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=25.67 E-value=1.8e+02 Score=20.61 Aligned_cols=41 Identities=10% Similarity=-0.042 Sum_probs=29.4
Q ss_pred CceeEEeCCCCcEEEEEEeccccChhHHH----HHHHHHHHHhhcC
Q 036254 41 LQAHPIKLPKHKYVVVRRFGGLMDDTSIS----TQASALKKSFKNS 82 (122)
Q Consensus 41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~----~~~~~L~~~L~~~ 82 (122)
.+++|+++| +..|+..+..|-..+..+. .....|.+.+...
T Consensus 124 m~~~I~~~~-~~~v~gi~~~~~~~~~~~~~~~~~~i~~lw~~~~~~ 168 (292)
T 1d5y_A 124 PEHKFVTLE-DTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN 168 (292)
T ss_dssp CCEEEEEEC-CEEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEeC-CeEEeeEEeeeccccccccccchhhhHHHHHHHhcc
Confidence 479999999 9999999998865543332 4456666666554
No 21
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=21.60 E-value=1.6e+02 Score=19.24 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=28.3
Q ss_pred CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcC
Q 036254 41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNS 82 (122)
Q Consensus 41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~ 82 (122)
|.+.|..-. +..+ .++.|..+.+.+.+.+++|.+.|...
T Consensus 134 P~~~lid~~-G~i~--~~~~g~~~~~~l~~~l~~~l~~l~~~ 172 (176)
T 3kh7_A 134 PETYLIDKQ-GIIR--HKIVGVVDQKVWREQLAPLYQQLLDE 172 (176)
T ss_dssp CEEEEECTT-CBEE--EEEESCCCHHHHHHHTHHHHHHHHC-
T ss_pred CeEEEECCC-CeEE--EEEcCCCCHHHHHHHHHHHHHHHhhc
Confidence 656666655 5544 47889999888888888888887754
No 22
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Probab=20.78 E-value=2.2e+02 Score=20.17 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=36.6
Q ss_pred CceeEEeCCCCcEEEEEEeccc--cChhHHHHHHHHHHHHhhcCCCc
Q 036254 41 LQAHPIKLPKHKYVVVRRFGGL--MDDTSISTQASALKKSFKNSTWE 85 (122)
Q Consensus 41 ~~V~i~~~p~~~~v~V~~F~G~--~~~~~~~~~~~~L~~~L~~~g~~ 85 (122)
..|.|...| ...+.+-.|.-- .+......-+.+|.+.|.+.|..
T Consensus 127 gGv~ivKT~-~qaiVIg~YdE~k~~~~g~c~~~ve~LadYL~~~Gy~ 172 (179)
T 2jkg_A 127 GGLHLVKVP-GGNILVVLYDEEKEQDRGNSKIAALTFAKELAESSQL 172 (179)
T ss_dssp EEEEEEEET-TTEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHHC---
T ss_pred CcEEEEEEC-CCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHcCch
Confidence 468888888 888888889988 88889999999999999999853
No 23
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=20.73 E-value=1.6e+02 Score=18.30 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=34.0
Q ss_pred CCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCC
Q 036254 48 LPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSP 107 (122)
Q Consensus 48 ~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P 107 (122)
-| ...+-+.+.+| .+.+.-++.++.|.+.|.+. ++ ...+..|+..+|.+
T Consensus 54 ~P-~a~~~v~sig~-~~~~~n~~~s~~i~~~l~~~-------Lg--i~~~riyI~f~d~~ 102 (114)
T 3djh_A 54 EP-CALCSLHSIGK-IGGAQNRSYSKLLCGLLAER-------LR--ISPDRVYINYYDMN 102 (114)
T ss_dssp SS-CEEEEEEESSC-CSHHHHHHHHHHHHHHHHHH-------HC--CCGGGEEEEEEECC
T ss_pred CC-EEEEEEEEccC-CCHHHHHHHHHHHHHHHHHH-------hC--cCcceEEEEEEECC
Confidence 56 66777888888 45566688889999999876 11 24556666666654
No 24
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=20.24 E-value=45 Score=16.43 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=14.2
Q ss_pred EEeCCCCcEEEEEEecccc
Q 036254 45 PIKLPKHKYVVVRRFGGLM 63 (122)
Q Consensus 45 i~~~p~~~~v~V~~F~G~~ 63 (122)
|.+-|+....|||+++-|.
T Consensus 3 i~eAP~Dg~~Yvr~dg~WV 21 (27)
T 2ww6_A 3 IPEAPRDAQAYVRKFGEWV 21 (27)
T ss_dssp CBCCCSSSCEEEEETTEEE
T ss_pred CccCCcCcceeEEEcCeEE
Confidence 3455667889999998774
Done!