Query 036257
Match_columns 418
No_of_seqs 278 out of 1455
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 10:56:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 7.5E-76 1.6E-80 559.2 27.6 319 80-401 89-410 (545)
2 cd02661 Peptidase_C19E A subfa 100.0 8.2E-63 1.8E-67 469.5 27.8 302 96-399 1-304 (304)
3 cd02668 Peptidase_C19L A subfa 100.0 1.1E-62 2.5E-67 471.3 27.6 290 98-399 1-324 (324)
4 cd02663 Peptidase_C19G A subfa 100.0 1.8E-62 3.9E-67 464.9 24.9 279 98-399 1-300 (300)
5 cd02660 Peptidase_C19D A subfa 100.0 5.7E-62 1.2E-66 468.4 28.2 299 97-399 1-328 (328)
6 cd02669 Peptidase_C19M A subfa 100.0 3.5E-61 7.5E-66 476.3 24.9 300 89-399 112-440 (440)
7 cd02664 Peptidase_C19H A subfa 100.0 5.6E-61 1.2E-65 459.4 25.2 276 98-399 1-327 (327)
8 cd02671 Peptidase_C19O A subfa 100.0 1.3E-60 2.8E-65 454.5 26.9 281 89-399 17-332 (332)
9 cd02667 Peptidase_C19K A subfa 100.0 5.2E-60 1.1E-64 443.3 23.7 246 98-399 1-279 (279)
10 cd02657 Peptidase_C19A A subfa 100.0 1.4E-59 3.1E-64 447.1 25.7 283 98-399 1-305 (305)
11 cd02658 Peptidase_C19B A subfa 100.0 4.6E-59 1E-63 444.7 26.9 276 98-399 1-311 (311)
12 cd02659 peptidase_C19C A subfa 100.0 1.2E-58 2.5E-63 446.5 27.1 296 95-402 1-333 (334)
13 COG5560 UBP12 Ubiquitin C-term 100.0 4.4E-56 9.6E-61 424.6 13.1 305 95-401 264-822 (823)
14 cd02662 Peptidase_C19F A subfa 100.0 7.3E-54 1.6E-58 392.4 21.1 210 98-399 1-240 (240)
15 COG5533 UBP5 Ubiquitin C-termi 100.0 4.6E-53 1E-57 373.0 19.1 305 94-401 69-414 (415)
16 cd02674 Peptidase_C19R A subfa 100.0 3.7E-50 8E-55 367.0 18.9 220 98-399 1-230 (230)
17 KOG0944 Ubiquitin-specific pro 100.0 1.7E-49 3.6E-54 382.6 15.7 294 89-401 300-762 (763)
18 cd02666 Peptidase_C19J A subfa 100.0 6E-48 1.3E-52 366.8 17.6 270 96-399 1-343 (343)
19 KOG1866 Ubiquitin carboxyl-ter 100.0 6.5E-50 1.4E-54 387.8 3.9 312 89-412 88-445 (944)
20 PF00443 UCH: Ubiquitin carbox 100.0 2E-47 4.2E-52 356.1 18.8 249 96-398 1-269 (269)
21 cd02665 Peptidase_C19I A subfa 100.0 1.1E-47 2.4E-52 342.7 15.3 218 98-399 1-228 (228)
22 KOG1868 Ubiquitin C-terminal h 100.0 2.5E-48 5.4E-53 387.7 11.1 311 91-403 296-648 (653)
23 cd02673 Peptidase_C19Q A subfa 100.0 2.2E-46 4.7E-51 341.1 17.8 236 99-399 2-245 (245)
24 COG5077 Ubiquitin carboxyl-ter 100.0 8.7E-48 1.9E-52 373.6 7.4 294 93-403 190-513 (1089)
25 KOG1867 Ubiquitin-specific pro 100.0 9.4E-46 2E-50 363.3 17.3 311 90-403 155-486 (492)
26 cd02257 Peptidase_C19 Peptidas 100.0 7.9E-44 1.7E-48 328.1 19.8 235 98-399 1-255 (255)
27 KOG1873 Ubiquitin-specific pro 100.0 1.3E-44 2.8E-49 352.0 8.6 144 256-401 679-877 (877)
28 COG5207 UBP14 Isopeptidase T [ 100.0 2.3E-43 4.9E-48 329.7 13.5 290 96-400 303-748 (749)
29 cd02672 Peptidase_C19P A subfa 100.0 4.9E-43 1.1E-47 323.4 12.2 240 88-399 7-268 (268)
30 KOG4598 Putative ubiquitin-spe 100.0 1E-42 2.3E-47 335.1 3.9 271 93-403 84-443 (1203)
31 KOG1870 Ubiquitin C-terminal h 100.0 2.5E-40 5.5E-45 347.3 13.7 310 89-402 239-842 (842)
32 PF13423 UCH_1: Ubiquitin carb 100.0 2.1E-38 4.5E-43 299.5 20.8 276 97-380 1-295 (295)
33 KOG1863 Ubiquitin carboxyl-ter 100.0 1.2E-39 2.7E-44 350.1 13.2 296 94-403 168-487 (1093)
34 KOG2026 Spindle pole body prot 100.0 1E-38 2.2E-43 290.1 9.6 307 75-401 118-441 (442)
35 cd02670 Peptidase_C19N A subfa 100.0 1.6E-35 3.4E-40 266.8 14.4 196 98-399 1-241 (241)
36 KOG1864 Ubiquitin-specific pro 100.0 4.5E-34 9.8E-39 285.0 14.4 307 95-402 231-573 (587)
37 KOG1872 Ubiquitin-specific pro 100.0 1.8E-32 3.9E-37 257.1 8.2 299 91-402 100-470 (473)
38 KOG1871 Ubiquitin-specific pro 100.0 4.7E-31 1E-35 241.3 10.1 302 94-401 26-419 (420)
39 KOG1275 PAB-dependent poly(A) 99.9 4.7E-23 1E-27 205.4 15.1 315 71-398 478-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 99.2 3.5E-10 7.6E-15 99.5 12.4 148 214-399 120-275 (275)
41 PF08715 Viral_protease: Papai 97.3 0.012 2.5E-07 55.5 15.4 77 96-197 102-179 (320)
42 KOG1864 Ubiquitin-specific pro 97.2 0.00082 1.8E-08 68.6 7.3 102 99-200 34-153 (587)
43 KOG1887 Ubiquitin carboxyl-ter 96.9 0.00017 3.6E-09 73.9 -0.6 207 180-401 548-790 (806)
44 KOG3556 Familial cylindromatos 96.9 0.00076 1.6E-08 65.4 3.7 31 96-126 368-398 (724)
45 PF05408 Peptidase_C28: Foot-a 94.9 0.015 3.3E-07 49.2 1.9 52 358-415 138-189 (193)
46 PF05408 Peptidase_C28: Foot-a 87.3 2 4.3E-05 36.7 6.1 21 97-117 34-54 (193)
47 PF14353 CpXC: CpXC protein 75.3 2.2 4.8E-05 34.7 2.2 48 229-287 2-49 (128)
48 COG3478 Predicted nucleic-acid 61.9 7.5 0.00016 27.0 2.2 34 276-309 4-39 (68)
49 KOG2906 RNA polymerase III sub 61.9 17 0.00037 27.7 4.2 71 223-297 16-86 (105)
50 PF01473 CW_binding_1: Putativ 51.7 15 0.00032 18.7 1.8 14 364-378 3-16 (19)
51 PF03292 Pox_P4B: Poxvirus P4B 51.2 24 0.00052 36.1 4.6 71 299-380 479-570 (666)
52 PF02099 Josephin: Josephin; 48.6 20 0.00043 30.3 3.2 32 345-382 99-130 (157)
53 PF13465 zf-H2C2_2: Zinc-finge 43.3 9.9 0.00022 21.2 0.4 13 273-285 11-23 (26)
54 PF03367 zf-ZPR1: ZPR1 zinc-fi 40.1 19 0.0004 30.6 1.8 58 229-306 2-61 (161)
55 PF10748 DUF2531: Protein of u 39.5 36 0.00077 27.8 3.2 57 341-403 34-102 (132)
56 PF09855 DUF2082: Nucleic-acid 36.6 28 0.00061 24.5 1.9 15 277-291 1-15 (64)
57 PF11164 DUF2948: Protein of u 33.6 1.5E+02 0.0033 24.4 6.0 67 297-364 33-105 (138)
58 smart00709 Zpr1 Duplicated dom 29.3 34 0.00073 29.0 1.6 41 230-289 2-42 (160)
59 PHA02998 RNA polymerase subuni 27.8 60 0.0013 27.8 2.8 48 218-285 132-180 (195)
60 TIGR00310 ZPR1_znf ZPR1 zinc f 27.6 32 0.00069 30.1 1.2 42 230-290 2-44 (192)
61 PRK03824 hypA hydrogenase nick 27.0 93 0.002 25.5 3.8 16 224-239 66-81 (135)
62 PF12252 SidE: Dot/Icm substra 26.6 62 0.0013 35.6 3.2 26 353-378 57-82 (1439)
63 TIGR00340 zpr1_rel ZPR1-relate 25.0 40 0.00086 28.7 1.3 42 231-290 1-42 (163)
64 KOG1867 Ubiquitin-specific pro 24.9 15 0.00032 37.3 -1.5 30 95-124 76-105 (492)
65 KOG2463 Predicted RNA-binding 24.8 91 0.002 29.5 3.6 37 277-314 258-295 (376)
66 PF13002 LDB19: Arrestin_N ter 24.0 2.1E+02 0.0045 25.1 5.4 66 277-351 23-88 (191)
67 PF14509 GH97_C: Glycosyl-hydr 20.1 3.6E+02 0.0078 20.9 5.7 47 358-404 13-65 (103)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-76 Score=559.19 Aligned_cols=319 Identities=52% Similarity=0.900 Sum_probs=300.9
Q ss_pred CCCCCCCccc---cccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhc
Q 036257 80 NGLDPELSFG---TTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQAT 156 (418)
Q Consensus 80 ~~~~p~~~~~---~~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 156 (418)
..+.|.+.+. .++...++||.|+|||||+|||||||.++||+.+||++..|...|+....|++|+++.++.+.+...
T Consensus 89 k~Lfp~e~~~~~~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~ 168 (545)
T KOG1865|consen 89 KVLFPYEKLPLSSDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNP 168 (545)
T ss_pred hhccccceecccccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCC
Confidence 4444533332 4467788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccChHHHHHHHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCC
Q 036257 157 GRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSY 236 (418)
Q Consensus 157 ~~~v~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~ 236 (418)
+.+++|..++..|+.+...|..|.|+||||||+++++.|+..|+ .+....+...++.++|+++|+|.++++++|..|++
T Consensus 169 g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL-~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~ 247 (545)
T KOG1865|consen 169 GHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL-PGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKG 247 (545)
T ss_pred CCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc-CCCccCCcccccceehhhhhccchhhceecccCCC
Confidence 99999999999999999999999999999999999999999998 55666677888999999999999999999999999
Q ss_pred ccccccccccccccccccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCCCCc
Q 036257 237 CSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQK 316 (418)
Q Consensus 237 ~s~~~e~f~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~~~K 316 (418)
++.++|+.++|+|+|....+|+++|++|+..|.++| ++.|+|++|+++++|.|+.+|.++|+||+|||+||+. +...|
T Consensus 248 vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~g-en~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~-~~~gK 325 (545)
T KOG1865|consen 248 VSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDG-ENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN-GTGGK 325 (545)
T ss_pred cccccccccceEEEeccchhHHHHHHHhhhHHhhCC-ccccccchhhhhCcccceeeeecCCceEEEeeehhcc-Ccccc
Confidence 999999999999999999999999999999999995 6669999999999999999999999999999999996 67799
Q ss_pred ccceeecCCCCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCceeeecccccCCCCcEEE
Q 036257 317 NDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYML 396 (418)
Q Consensus 317 ~~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~v~~~~v~~~~aYil 396 (418)
+.+.|.||+.|||.+||+.....+..|.|||||+|.|.+.++|||+||||..+|+||.+||+.|+.++.+.|++++||||
T Consensus 326 I~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmL 405 (545)
T KOG1865|consen 326 ISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYIL 405 (545)
T ss_pred cccccCCcccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccccceecccceEE
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEe
Q 036257 397 FYVRD 401 (418)
Q Consensus 397 ~Y~r~ 401 (418)
||.|+
T Consensus 406 fY~R~ 410 (545)
T KOG1865|consen 406 FYARK 410 (545)
T ss_pred EEEee
Confidence 99997
No 2
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.2e-63 Score=469.50 Aligned_cols=302 Identities=56% Similarity=0.965 Sum_probs=272.3
Q ss_pred CCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhhhcc
Q 036257 96 GAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRN 175 (418)
Q Consensus 96 ~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~~~~ 175 (418)
|+||.|+||||||||+||+|+++|+||+++++..+.........|++|++..++..++.+....+.|..|..++....+.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~ 80 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKH 80 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHh
Confidence 68999999999999999999999999999998665555555667899999999999998888899999999999999999
Q ss_pred CCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCc--chhhhhccccccceeeEEEEEEEeCCCCCccccccccccccccccc
Q 036257 176 FRNSRQEDAHEYMVNLLESMHKCCLPSGVPSE--SANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAK 253 (418)
Q Consensus 176 f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~--~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~ 253 (418)
|..+.||||+||+.+||+.|++++........ .......+++.++|+|++.++++|..|+..+.+.++|+.|+|++|.
T Consensus 81 f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~ 160 (304)
T cd02661 81 FRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKG 160 (304)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCC
Confidence 99999999999999999999988654322111 1223346789999999999999999999999999999999999999
Q ss_pred cccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCCCCcccceeecCCCCCCCCCc
Q 036257 254 ADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFV 333 (418)
Q Consensus 254 ~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~~~K~~~~v~fp~~Ldl~~~~ 333 (418)
..+++++|+.++.+|.+++.+ .|.|++|+++..+.++..|.++|++|+|||+||.++ ...|+.+.|.||..|||.+++
T Consensus 161 ~~~l~~~l~~~~~~e~~~~~~-~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~-~~~Ki~~~v~f~~~L~l~~~~ 238 (304)
T cd02661 161 ADSLEDALEQFTKPEQLDGEN-KYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF-RGGKINKQISFPETLDLSPYM 238 (304)
T ss_pred CCcHHHHHHHhcCceeeCCCC-CeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC-CccccCCeEecCCeechhhcc
Confidence 999999999999999887654 499999999999999999999999999999999987 568999999999999999999
Q ss_pred CCCCCCCceEEEEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCceeeecccccCCCCcEEEEEE
Q 036257 334 SGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYV 399 (418)
Q Consensus 334 ~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~v~~~~v~~~~aYil~Y~ 399 (418)
........+|+|+|||+|.|...++|||+||+|..+++||+|||..|++++++++++.+||||||.
T Consensus 239 ~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 239 SQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred ccCCCCCceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence 876677889999999999996669999999999988999999999999999999999999999994
No 3
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-62 Score=471.30 Aligned_cols=290 Identities=26% Similarity=0.467 Sum_probs=255.2
Q ss_pred CccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCcc---------ccccchHHHHHHHHHHHHHHhcCCccChHHHHHH
Q 036257 98 GLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSC---------HIAGFCALCAIQKHVSRALQATGRILAPKDLVSN 168 (418)
Q Consensus 98 GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~---------~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~ 168 (418)
||.|+||||||||+||+|+++|+||++++........ .....+++++|+.+|..++.+....++|..|+++
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 9999999999999999999999999999875433210 0123578999999999999988889999999998
Q ss_pred HHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCcccccccccccc
Q 036257 169 LRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLS 248 (418)
Q Consensus 169 l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~ 248 (418)
+. +..++||||+||+.+||+.|++++..... ....+++.++|+|++..+++|..|+..+.+.++|+.|+
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~------~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~ 149 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN------PDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELE 149 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhccC------CcccchhhhhcceEEEEEEEeCCCCCccccccccEEEE
Confidence 83 67889999999999999999998753311 12357899999999999999999999999999999999
Q ss_pred ccccccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCC---CCCcccceeecCC
Q 036257 249 LEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHD---PGQKNDKKVQFGS 325 (418)
Q Consensus 249 l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~---~~~K~~~~v~fp~ 325 (418)
|++++..+|+++|+.++.+|.+++.+ .|.|++|++++.+.++..|.++|++|+|||+||.++. ...|+.+.|.||.
T Consensus 150 l~i~~~~sl~~~L~~~~~~e~l~g~~-~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~ 228 (324)
T cd02668 150 LQLKGHKTLEECIDEFLKEEQLTGDN-QYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPE 228 (324)
T ss_pred EEecccCCHHHHHHHhhCceecCCCc-cccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCC
Confidence 99999999999999999999998654 4999999999999999999999999999999999874 2479999999999
Q ss_pred CCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEECC-CCCEEEEeCCceeeeccccc----------------
Q 036257 326 TLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTS-SGMWYSLDDNRVVQVNERSV---------------- 388 (418)
Q Consensus 326 ~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~-~~~W~~~dD~~V~~v~~~~v---------------- 388 (418)
.|||.+|+..+..+..+|+|+|||+|.|.++++|||+||+|.. +++||.|||+.|++++++.+
T Consensus 229 ~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~ 308 (324)
T cd02668 229 ILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEI 308 (324)
T ss_pred eEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhccccccccccccccc
Confidence 9999999987767778999999999999768999999999985 58999999999999977655
Q ss_pred -----CCCCcEEEEEE
Q 036257 389 -----LEQKAYMLFYV 399 (418)
Q Consensus 389 -----~~~~aYil~Y~ 399 (418)
.+.+||||||+
T Consensus 309 ~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 309 KKGTHSSRTAYMLVYK 324 (324)
T ss_pred CCCccccCceEEEEeC
Confidence 23689999995
No 4
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-62 Score=464.91 Aligned_cols=279 Identities=31% Similarity=0.533 Sum_probs=247.0
Q ss_pred CccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcC--CccChHHHHHHHHhhhcc
Q 036257 98 GLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATG--RILAPKDLVSNLRCISRN 175 (418)
Q Consensus 98 GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~v~p~~~~~~l~~~~~~ 175 (418)
||.|+||||||||+||+|+| .+++++|..+|..++.+.. ..++|..|+++|....+.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~---------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~ 59 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF---------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENEL 59 (300)
T ss_pred CccCCCcceehhHHHHHhhh---------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCC
Confidence 99999999999999999988 3478899999999887643 469999999999998899
Q ss_pred CCCCCcCcHHHHHHHHHHHHhhhcCCCCCCC--------cchhhhhccccccceeeEEEEEEEeCCCCCccccccccccc
Q 036257 176 FRNSRQEDAHEYMVNLLESMHKCCLPSGVPS--------ESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDL 247 (418)
Q Consensus 176 f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~--------~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l 247 (418)
|..+.||||+|||.+||+.|++++....... ........++|.++|+|++.++++|..|++.+.+.|+|++|
T Consensus 60 f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~L 139 (300)
T cd02663 60 FDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDL 139 (300)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEe
Confidence 9999999999999999999999875321110 01122346789999999999999999999999999999999
Q ss_pred cccccccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCC---CCcccceeecC
Q 036257 248 SLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDP---GQKNDKKVQFG 324 (418)
Q Consensus 248 ~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~---~~K~~~~v~fp 324 (418)
+|+|+...+|+++|+.|+.+|.+.+.+ .|.|++|++++.+.++..|.++|+||+|||+||.++.. ..|+.+.|.||
T Consensus 140 sl~i~~~~sl~~~L~~~~~~E~l~~~~-~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp 218 (300)
T cd02663 140 SIDVEQNTSITSCLRQFSATETLCGRN-KFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFP 218 (300)
T ss_pred ccCCCCcCCHHHHHHHhhcccccCCCC-cEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecC
Confidence 999999999999999999999998754 49999999999999999999999999999999998753 47999999999
Q ss_pred CCCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCceeeecccccC--------CCCcEEE
Q 036257 325 STLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVL--------EQKAYML 396 (418)
Q Consensus 325 ~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~v~~~~v~--------~~~aYil 396 (418)
..|+|..+..........|+|+|||+|.|.++++|||+||+|. +++||+|||+.|+++++++|. ..+||||
T Consensus 219 ~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiL 297 (300)
T cd02663 219 LELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKS-HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVL 297 (300)
T ss_pred cEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEEC-CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEE
Confidence 9999988765544556799999999999966899999999999 899999999999999998886 5899999
Q ss_pred EEE
Q 036257 397 FYV 399 (418)
Q Consensus 397 ~Y~ 399 (418)
||+
T Consensus 298 fY~ 300 (300)
T cd02663 298 FYQ 300 (300)
T ss_pred EeC
Confidence 995
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.7e-62 Score=468.39 Aligned_cols=299 Identities=35% Similarity=0.598 Sum_probs=261.8
Q ss_pred CCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCC--ccccccchHHHHHHHHHHHHHHh-cCCccChHHHHHHHHhhh
Q 036257 97 AGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQS--SCHIAGFCALCAIQKHVSRALQA-TGRILAPKDLVSNLRCIS 173 (418)
Q Consensus 97 ~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~-~~~~v~p~~~~~~l~~~~ 173 (418)
+||.|+||||||||+||+|+++|+||++++...+.. .......|++|+|..++..++.. ....+.|..++.++....
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 599999999999999999999999999999875543 22345678999999999988544 456789999999998888
Q ss_pred ccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCccccccccccccccccc
Q 036257 174 RNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAK 253 (418)
Q Consensus 174 ~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~ 253 (418)
+.|.++.||||+||+.+||+.|++++....... .......++|.++|+|.+.++++|..|++.+.+.++|+.|+|++|.
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~-~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~ 159 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA-NDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPN 159 (328)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhhcccccc-cccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeeccc
Confidence 889999999999999999999999875432211 1112235789999999999999999999999999999999999987
Q ss_pred c---------------ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCC--CCCc
Q 036257 254 A---------------DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHD--PGQK 316 (418)
Q Consensus 254 ~---------------~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~--~~~K 316 (418)
. .+|+++|+.++.+|.+.+. + |.|++|++++.+.++..|.++|++|+|||+||.++. ...|
T Consensus 160 ~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~-~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K 237 (328)
T cd02660 160 KSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDF-A-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRK 237 (328)
T ss_pred cccccccccccCCCCCCCHHHHHHHhcCccccCCC-C-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCcC
Confidence 6 8999999999999988753 3 899999999999999999999999999999999875 3479
Q ss_pred ccceeecCCCCCCCCCcCC---------CCCCCceEEEEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCceeeecccc
Q 036257 317 NDKKVQFGSTLDMKPFVSG---------SYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERS 387 (418)
Q Consensus 317 ~~~~v~fp~~Ldl~~~~~~---------~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~v~~~~ 387 (418)
+...|.||..|||.+|+.. ......+|+|+|||+|.| +.++|||+||+|..+++||+|||+.|+++++++
T Consensus 238 ~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~ 316 (328)
T cd02660 238 IDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKG-TLDTGHYTAYCRQGDGQWFKFDDAMITRVSEEE 316 (328)
T ss_pred CCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeec-cCCCCcEEEEEECCCCcEEEEECCeeEECCHHH
Confidence 9999999999999999874 234567999999999999 788999999999977999999999999999999
Q ss_pred cCCCCcEEEEEE
Q 036257 388 VLEQKAYMLFYV 399 (418)
Q Consensus 388 v~~~~aYil~Y~ 399 (418)
|+..+||||||.
T Consensus 317 v~~~~ayil~Y~ 328 (328)
T cd02660 317 VLKSQAYLLFYH 328 (328)
T ss_pred hcCCCcEEEEeC
Confidence 999999999994
No 6
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.5e-61 Score=476.26 Aligned_cols=300 Identities=21% Similarity=0.346 Sum_probs=250.8
Q ss_pred ccccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhc--CCccChHHHH
Q 036257 89 GTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQAT--GRILAPKDLV 166 (418)
Q Consensus 89 ~~~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~v~p~~~~ 166 (418)
+..+.+|++||.|+||||||||+||+|+|+|+||++++...+.........++.+++..++.++|... ...++|.+|+
T Consensus 112 ~~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl 191 (440)
T cd02669 112 GKPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELL 191 (440)
T ss_pred CCCccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHH
Confidence 66778999999999999999999999999999999999866543222234468899999999999765 4689999999
Q ss_pred HHHHhhh-ccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCC----------
Q 036257 167 SNLRCIS-RNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCS---------- 235 (418)
Q Consensus 167 ~~l~~~~-~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~---------- 235 (418)
+++.... +.|..+.||||+|||.+||+.||+++.... ....++|+++|+|++++.++|..|.
T Consensus 192 ~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~-------~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~ 264 (440)
T cd02669 192 QAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK-------KPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKF 264 (440)
T ss_pred HHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC-------CCCCCcceeccCceEEEEEEeeccccccccccccc
Confidence 9997764 568899999999999999999999875421 2246889999999999999987654
Q ss_pred -----CccccccccccccccccccccHHH-----HHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEE
Q 036257 236 -----YCSNKFDPFLDLSLEIAKADSVLK-----ALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHL 305 (418)
Q Consensus 236 -----~~s~~~e~f~~l~l~i~~~~~l~~-----~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l 305 (418)
..+.+.++|++|+|+||..+.+.+ ++..+...+.++. |.|++|.....+.|+++|.++|+||+|||
T Consensus 265 ~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~k----y~~~~c~~~~~a~k~~~I~~LP~vLiihL 340 (440)
T cd02669 265 FKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKK----YDGKTETELKDSLKRYLISRLPKYLIFHI 340 (440)
T ss_pred ccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHh----cCCccceecccceEEEEEeeCCcEEEEEE
Confidence 245678999999999998644332 2333344444443 88999998889999999999999999999
Q ss_pred eeeecCCC-CCcccceeecCCC-CCCCCCcCCC---CCCCceEEEEEEEEeeecCCCCCceEEEEEC-CCCCEEEEeCCc
Q 036257 306 KRFRAHDP-GQKNDKKVQFGST-LDMKPFVSGS---YEGDLKYTLYGVLVHHGWSTHSGHYYCFVRT-SSGMWYSLDDNR 379 (418)
Q Consensus 306 ~Rf~~~~~-~~K~~~~v~fp~~-Ldl~~~~~~~---~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~-~~~~W~~~dD~~ 379 (418)
+||.++.. ..|+.+.|.||.. |||++|+... .....+|+|+|||+|.|..+++|||+||||+ .+|+||+|||+.
T Consensus 341 KRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~ 420 (440)
T cd02669 341 KRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLN 420 (440)
T ss_pred ecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCe
Confidence 99998753 4899999999986 8999998642 2356799999999999943399999999997 478999999999
Q ss_pred eeeecccccCCCCcEEEEEE
Q 036257 380 VVQVNERSVLEQKAYMLFYV 399 (418)
Q Consensus 380 V~~v~~~~v~~~~aYil~Y~ 399 (418)
|+++++++|+..+||||||+
T Consensus 421 V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 421 VKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred eeEcCHHHhccCCceEEEeC
Confidence 99999999999999999996
No 7
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.6e-61 Score=459.37 Aligned_cols=276 Identities=33% Similarity=0.565 Sum_probs=240.4
Q ss_pred CccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHH-HHHHHHhhhccC
Q 036257 98 GLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKD-LVSNLRCISRNF 176 (418)
Q Consensus 98 GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~-~~~~l~~~~~~f 176 (418)
||.|+||||||||+||+|+++|+||+++++...+.. ....+++++++.++..+..+....+.|.. ++.++. .+.|
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~--~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~--~~~f 76 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL--GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR--PPWF 76 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc--CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--cccc
Confidence 899999999999999999999999999998765421 12344678888888877766666777776 666543 4678
Q ss_pred CCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCcccccccccccccccccccc
Q 036257 177 RNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADS 256 (418)
Q Consensus 177 ~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~~ 256 (418)
..+.||||+||+.+||+.|+ ++|.++|+|++.++++|..|+..+.+.++|..|+|++| +
T Consensus 77 ~~~~QqDa~EFl~~lLd~l~------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~---s 135 (327)
T cd02664 77 TPGSQQDCSEYLRYLLDRLH------------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP---S 135 (327)
T ss_pred CCCCcCCHHHHHHHHHHHHH------------------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC---C
Confidence 89999999999999999997 24899999999999999999999999999999999998 8
Q ss_pred HHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCC---CCcccceeecCCCCCCCCCc
Q 036257 257 VLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDP---GQKNDKKVQFGSTLDMKPFV 333 (418)
Q Consensus 257 l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~---~~K~~~~v~fp~~Ldl~~~~ 333 (418)
|+++|+.++.+|.+++.+ .|.|++|++++.+.++..|.++|+||+|||+||.++.. ..|+.+.|.||..|||..++
T Consensus 136 l~~~l~~~~~~E~l~g~n-~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~ 214 (327)
T cd02664 136 VQDLLNYFLSPEKLTGDN-QYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRV 214 (327)
T ss_pred HHHHHHHhcCeeEccCCC-ceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCccc
Confidence 999999999999998754 49999999999999999999999999999999998753 37999999999999999886
Q ss_pred CCC-------------------CCCCceEEEEEEEEeeecCCCCCceEEEEECCC---------------------CCEE
Q 036257 334 SGS-------------------YEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSS---------------------GMWY 373 (418)
Q Consensus 334 ~~~-------------------~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~---------------------~~W~ 373 (418)
... .....+|+|+|||+|.|.++++|||+||+|... +.||
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 294 (327)
T cd02664 215 ESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWY 294 (327)
T ss_pred cccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEE
Confidence 311 123578999999999996689999999999854 7899
Q ss_pred EEeCCceeeecccccCC-------CCcEEEEEE
Q 036257 374 SLDDNRVVQVNERSVLE-------QKAYMLFYV 399 (418)
Q Consensus 374 ~~dD~~V~~v~~~~v~~-------~~aYil~Y~ 399 (418)
.|||+.|++++.++|.+ .+||||||+
T Consensus 295 ~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 295 LFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred EEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 99999999999999986 899999995
No 8
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-60 Score=454.54 Aligned_cols=281 Identities=29% Similarity=0.466 Sum_probs=240.9
Q ss_pred ccccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHH
Q 036257 89 GTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSN 168 (418)
Q Consensus 89 ~~~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~ 168 (418)
.+.+..+++||.|+||||||||+||+|+++|+||+.+........ ....++.+..++..++.......+|..|+++
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~----~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~ 92 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLIS----SVEQLQSSFLLNPEKYNDELANQAPRRLLNA 92 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccC----cHHHHHHHHHHHHHHHhhcccccCHHHHHHH
Confidence 355678889999999999999999999999999999876431111 1112333333445556555666789999999
Q ss_pred HHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCcccccccccccc
Q 036257 169 LRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLS 248 (418)
Q Consensus 169 l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~ 248 (418)
++...+.|..+.||||+|||.+||+.|+. ++.++|+|++.++++|..|++.+.+.|+|++|+
T Consensus 93 l~~~~~~f~~~~QQDA~EFl~~LLd~L~~------------------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~ls 154 (332)
T cd02671 93 LREVNPMYEGYLQHDAQEVLQCILGNIQE------------------LVEKDFQGQLVLRTRCLECETFTERREDFQDIS 154 (332)
T ss_pred HHHhccccCCccccCHHHHHHHHHHHHHH------------------HHHhhhceEEEEEEEeCCCCCeeceecccEEEE
Confidence 99999999999999999999999999984 388999999999999999999999999999999
Q ss_pred cccccc-------------------ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeee
Q 036257 249 LEIAKA-------------------DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFR 309 (418)
Q Consensus 249 l~i~~~-------------------~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~ 309 (418)
|+++.. .+|+++|+.|+.+|.+.|++ .|.|++|++++.+.++..|.++|++|+|||+||.
T Consensus 155 L~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n-~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~ 233 (332)
T cd02671 155 VPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGED-KYFCENCHHYTEAERSLLFDKLPEVITIHLKCFA 233 (332)
T ss_pred EEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCC-CeeCCCCCCceeEEEEEEEecCCCEEEEEeeeec
Confidence 999865 48999999999999998754 4999999999999999999999999999999999
Q ss_pred cCC-------CCCcccceeecCCCCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCceee
Q 036257 310 AHD-------PGQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQ 382 (418)
Q Consensus 310 ~~~-------~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~ 382 (418)
+++ ...|+.+.|.||..||+.++.... ....|+|+|||+|.|.+.++|||+|||| ||+|||+.|+.
T Consensus 234 ~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~--~~~~Y~L~~VI~H~G~~~~~GHY~a~vr-----W~~fdD~~V~~ 306 (332)
T cd02671 234 ANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTKP--KNDVYRLFAVVMHSGATISSGHYTAYVR-----WLLFDDSEVKV 306 (332)
T ss_pred cccccccccCCceecCccccCccccccccccCCC--CCCeEEEEEEEEEcCCCCCCCeEEEEEE-----EEEEcCcceEE
Confidence 753 247999999999999998776543 4578999999999997689999999999 99999999999
Q ss_pred ecccccCC---------CCcEEEEEE
Q 036257 383 VNERSVLE---------QKAYMLFYV 399 (418)
Q Consensus 383 v~~~~v~~---------~~aYil~Y~ 399 (418)
++++++.. .+||||||+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 307 TEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred ccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 98877652 699999994
No 9
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.2e-60 Score=443.26 Aligned_cols=246 Identities=40% Similarity=0.740 Sum_probs=224.3
Q ss_pred CccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhhhccCC
Q 036257 98 GLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFR 177 (418)
Q Consensus 98 GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~~~~f~ 177 (418)
||.|+||||||||+||+|+|+|+||++++. +|..|+..+....+.|.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~---------------------------------~P~~~~~~l~~~~~~f~ 47 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE---------------------------------TPKELFSQVCRKAPQFK 47 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH---------------------------------CHHHHHHHHHHhhHhhc
Confidence 999999999999999999999999999976 77788888888888899
Q ss_pred CCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCccccccccccccccccc----
Q 036257 178 NSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAK---- 253 (418)
Q Consensus 178 ~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~---- 253 (418)
.++||||+|||.+||+.|+ +++.++|+|++.++++|..|++.+.+.|+|+.|+|+++.
T Consensus 48 ~~~QqDA~Efl~~lld~l~------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~~ 109 (279)
T cd02667 48 GYQQQDSHELLRYLLDGLR------------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKS 109 (279)
T ss_pred CCchhhHHHHHHHHHHHHH------------------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccCC
Confidence 9999999999999999998 348899999999999999999999999999999998764
Q ss_pred cccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCC--CCcccceeecCCCCCCCC
Q 036257 254 ADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDP--GQKNDKKVQFGSTLDMKP 331 (418)
Q Consensus 254 ~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~--~~K~~~~v~fp~~Ldl~~ 331 (418)
..+|+++|+.|+.+|.+++. +.|.|++|++ +.++..|.++|++|+|||+||.++.. ..|+.+.|.||..|||.+
T Consensus 110 ~~sL~~~L~~~~~~E~l~~~-~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~ 185 (279)
T cd02667 110 ECSIESCLKQFTEVEILEGN-NKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAP 185 (279)
T ss_pred CCCHHHHHHhhcCeeEecCC-CcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhh
Confidence 36899999999999999864 4599999987 88999999999999999999998754 489999999999999999
Q ss_pred CcCC-----CCCCCceEEEEEEEEeeecCCCCCceEEEEECC----------------------CCCEEEEeCCceeeec
Q 036257 332 FVSG-----SYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTS----------------------SGMWYSLDDNRVVQVN 384 (418)
Q Consensus 332 ~~~~-----~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~----------------------~~~W~~~dD~~V~~v~ 384 (418)
|+.. ......+|+|+|||+|.| +.++|||+||||.. ++.||+|||+.|++++
T Consensus 186 ~~~~~~~~~~~~~~~~Y~L~~vi~H~G-~~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~ 264 (279)
T cd02667 186 FCDPKCNSSEDKSSVLYRLYGVVEHSG-TMRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVS 264 (279)
T ss_pred ccCccccccccCCCceEEEEEEEEEeC-CCCCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECC
Confidence 9976 223567999999999999 55999999999973 5799999999999999
Q ss_pred ccccCCCCcEEEEEE
Q 036257 385 ERSVLEQKAYMLFYV 399 (418)
Q Consensus 385 ~~~v~~~~aYil~Y~ 399 (418)
.++|.+.+||||||+
T Consensus 265 ~~~v~~~~aYiLfYe 279 (279)
T cd02667 265 LEEVLKSEAYLLFYE 279 (279)
T ss_pred HHHhccCCcEEEEeC
Confidence 999999999999996
No 10
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-59 Score=447.10 Aligned_cols=283 Identities=27% Similarity=0.399 Sum_probs=246.9
Q ss_pred CccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCc-cccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhhhccC
Q 036257 98 GLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSS-CHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNF 176 (418)
Q Consensus 98 GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~~~~f 176 (418)
||.|+||||||||+||+|+++|+||++++....... ......++++++..++..++.+. ..++|..|+..+....+.|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~~~~f 79 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMAFPQF 79 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHHCcCc
Confidence 899999999999999999999999999988654321 12234678999999998887655 4799999999999888887
Q ss_pred C------CCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCC-Cccccccccccccc
Q 036257 177 R------NSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCS-YCSNKFDPFLDLSL 249 (418)
Q Consensus 177 ~------~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~-~~s~~~e~f~~l~l 249 (418)
. .++||||+||+.+||+.|++++... ....++|.++|+|++.+.++|..|+ ..+.+.++|+.|+|
T Consensus 80 ~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~--------~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Lsl 151 (305)
T cd02657 80 AEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA--------GSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQC 151 (305)
T ss_pred ccccCCCCccccCHHHHHHHHHHHHHHHhccc--------CCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEEe
Confidence 4 4599999999999999999986431 1235679999999999999999999 78999999999999
Q ss_pred ccccc---ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCC---CCcccceeec
Q 036257 250 EIAKA---DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDP---GQKNDKKVQF 323 (418)
Q Consensus 250 ~i~~~---~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~---~~K~~~~v~f 323 (418)
+|+.. .+|+++|+.++.++.. ..|+.|++...+.++.+|.++|++|+|||+||.++.. ..|+.+.|.|
T Consensus 152 ~i~~~~~~~~l~~~L~~~~~~~~~------~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~f 225 (305)
T cd02657 152 HISITTEVNYLQDGLKKGLEEEIE------KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKF 225 (305)
T ss_pred ecCCCcccccHHHHHHHhhhhhhh------hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEEC
Confidence 99976 6899999999876653 3599999999999999999999999999999998743 4689999999
Q ss_pred CCCCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEECCC-CCEEEEeCCceeeecccccCC-------CCcEE
Q 036257 324 GSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSS-GMWYSLDDNRVVQVNERSVLE-------QKAYM 395 (418)
Q Consensus 324 p~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~-~~W~~~dD~~V~~v~~~~v~~-------~~aYi 395 (418)
|..|||.+|+. .+.+|+|+|||+|.|.++++|||+||+|..+ +.||.|||+.|+.+++++|.. ..|||
T Consensus 226 P~~Ldl~~~~~----~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYi 301 (305)
T cd02657 226 PFELDLYELCT----PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYI 301 (305)
T ss_pred CceEecccccC----CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEE
Confidence 99999999987 3468999999999997789999999999965 899999999999999999974 69999
Q ss_pred EEEE
Q 036257 396 LFYV 399 (418)
Q Consensus 396 l~Y~ 399 (418)
|||+
T Consensus 302 L~Y~ 305 (305)
T cd02657 302 LLYK 305 (305)
T ss_pred EEEC
Confidence 9995
No 11
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.6e-59 Score=444.69 Aligned_cols=276 Identities=26% Similarity=0.417 Sum_probs=240.2
Q ss_pred CccccCChhhHHHHHHHHhCCHHHHHHHhcCCCC--CccccccchHHHHHHHHHHHHHHhc--------------CCccC
Q 036257 98 GLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQ--SSCHIAGFCALCAIQKHVSRALQAT--------------GRILA 161 (418)
Q Consensus 98 GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~--------------~~~v~ 161 (418)
||.|+||||||||+||||+++|+||++++...+. ........++++++.+++..++... ...++
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 9999999999999999999999999999873322 2222345678999999988776532 34689
Q ss_pred hHHHHHHHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCccccc
Q 036257 162 PKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKF 241 (418)
Q Consensus 162 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~ 241 (418)
|..|+.+++...+.|..+.||||+||+.+||+.|++++.... ...+.++|+|.+..+++|..|+..+.+.
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~----------~~~~~~~f~~~~~~~i~C~~C~~~s~~~ 150 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKNL----------GLNPNDLFKFMIEDRLECLSCKKVKYTS 150 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhcccc----------cCCchhheEEEeeEEEEcCCCCCEEEee
Confidence 999999999999999999999999999999999998864211 2347899999999999999999989999
Q ss_pred cccccccccccccc--------------cHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEee
Q 036257 242 DPFLDLSLEIAKAD--------------SVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKR 307 (418)
Q Consensus 242 e~f~~l~l~i~~~~--------------~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~R 307 (418)
++|..|+|++|... +|+++|+.|+..|.++ +.|++|++++.+.++.+|.++|++|+|||+|
T Consensus 151 e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~-----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkR 225 (311)
T cd02658 151 ELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE-----DFCSTCKEKTTATKTTGFKTFPDYLVINMKR 225 (311)
T ss_pred cceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc-----ccccCCCCcccEEEEEEeecCCceEEEEeEE
Confidence 99999999988543 8999999999998886 5799999999999999999999999999999
Q ss_pred eecCC--CCCcccceeecCCCCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEECC---CCCEEEEeCCceee
Q 036257 308 FRAHD--PGQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTS---SGMWYSLDDNRVVQ 382 (418)
Q Consensus 308 f~~~~--~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~---~~~W~~~dD~~V~~ 382 (418)
|.++. ...|+...|.||..| ...+|+|+|||+|.|.+.++|||+||||.. +++||+|||+.|++
T Consensus 226 F~~~~~~~~~Ki~~~v~~p~~l-----------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~ 294 (311)
T cd02658 226 FQLLENWVPKKLDVPIDVPEEL-----------GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVA 294 (311)
T ss_pred EEecCCCceEeeccccccCCcC-----------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEE
Confidence 99853 247899999999877 335799999999999669999999999985 38999999999999
Q ss_pred ecccccCCCCcEEEEEE
Q 036257 383 VNERSVLEQKAYMLFYV 399 (418)
Q Consensus 383 v~~~~v~~~~aYil~Y~ 399 (418)
++..++...+||||||+
T Consensus 295 ~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 295 SQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred CCcccccCCcceEEEEC
Confidence 99999999999999995
No 12
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-58 Score=446.54 Aligned_cols=296 Identities=28% Similarity=0.481 Sum_probs=250.9
Q ss_pred CCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhhhc
Q 036257 95 IGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISR 174 (418)
Q Consensus 95 ~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~~~ 174 (418)
|++||.|+||||||||+||+|+++|+||++++..... .......+++++++.++..+..+....+.|..+.........
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~-~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT-EDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFGWD 79 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc-ccCcccccHHHHHHHHHHHHHhCCccccCcchhheeccCCCC
Confidence 5799999999999999999999999999999985211 112334568899999998888766655666555411121234
Q ss_pred cCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCcccccccccccccccccc
Q 036257 175 NFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKA 254 (418)
Q Consensus 175 ~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~ 254 (418)
.|..+.||||+||+.+||+.|++++.... ..+++.++|+|.+...++|..|+..+...++|+.|+|+++..
T Consensus 80 ~~~~~~QqDa~Efl~~ll~~l~~~~~~~~---------~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~ 150 (334)
T cd02659 80 SLNTFEQHDVQEFFRVLFDKLEEKLKGTG---------QEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKGK 150 (334)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhccCc---------ccchhhhhCceEEEeEEEecCCCceecccccceEEEEEcCCC
Confidence 57789999999999999999998864321 235799999999999999999999999999999999999999
Q ss_pred ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCC---CCCcccceeecCCCCCCCC
Q 036257 255 DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHD---PGQKNDKKVQFGSTLDMKP 331 (418)
Q Consensus 255 ~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~---~~~K~~~~v~fp~~Ldl~~ 331 (418)
.+++++|+.++.++.+++.+ .|.|++|+++..+.++..|.++|++|+|||+||.++. ...|++..|.||..|||.+
T Consensus 151 ~~l~~~l~~~~~~e~l~~~~-~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~ 229 (334)
T cd02659 151 KNLEESLDAYVQGETLEGDN-KYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEP 229 (334)
T ss_pred CCHHHHHHHhcCeeEecCCc-cEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCcc
Confidence 99999999999999987654 4999999999999999999999999999999999763 3479999999999999999
Q ss_pred CcCCC-----------CCCCceEEEEEEEEeeecCCCCCceEEEEECC-CCCEEEEeCCceeeecccccC----------
Q 036257 332 FVSGS-----------YEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTS-SGMWYSLDDNRVVQVNERSVL---------- 389 (418)
Q Consensus 332 ~~~~~-----------~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~-~~~W~~~dD~~V~~v~~~~v~---------- 389 (418)
++... .....+|+|+|||+|.| +.++|||+||||.. +++||.|||+.|+++++++|.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G-~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~ 308 (334)
T cd02659 230 YTEKGLAKKEGDSEKKDSESYIYELHGVLVHSG-DAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQ 308 (334)
T ss_pred ccccccccccccccccCCCCeeEEEEEEEEecC-CCCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCcccc
Confidence 98654 23467899999999999 78999999999984 799999999999999998885
Q ss_pred ------------CCCcEEEEEEEec
Q 036257 390 ------------EQKAYMLFYVRDR 402 (418)
Q Consensus 390 ------------~~~aYil~Y~r~~ 402 (418)
...||||||+|++
T Consensus 309 ~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 309 KTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred ccccccccccccccceEEEEEEEeC
Confidence 2469999999975
No 13
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-56 Score=424.60 Aligned_cols=305 Identities=30% Similarity=0.518 Sum_probs=265.4
Q ss_pred CCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCcccc-----ccchHHHHHHHHHHHHHHhcCCccChHHHHHHH
Q 036257 95 IGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHI-----AGFCALCAIQKHVSRALQATGRILAPKDLVSNL 169 (418)
Q Consensus 95 ~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~-----~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l 169 (418)
|.+||.|+||||||||.||||.|++.+|+||++..+....+. .+......+..++.+++...-..++|..|...+
T Consensus 264 GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~tI 343 (823)
T COG5560 264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTI 343 (823)
T ss_pred cccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHHH
Confidence 678999999999999999999999999999998766554332 223345567777888887778899999999999
Q ss_pred HhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCC------CCCCcc-----------------hhhhhccccccceeeEEE
Q 036257 170 RCISRNFRNSRQEDAHEYMVNLLESMHKCCLPS------GVPSES-----------------ANAYEKSLVHKIFGGRLR 226 (418)
Q Consensus 170 ~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~------~~~~~~-----------------~~~~~~s~i~~~F~g~~~ 226 (418)
+.+...|.++.|||++||+.+|||.||++++.. ..|.-. ....+.++|.++|+|..+
T Consensus 344 G~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyK 423 (823)
T COG5560 344 GSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYK 423 (823)
T ss_pred hhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Confidence 999999999999999999999999999998621 111100 113367999999999999
Q ss_pred EEEEeCCCCCccccccccccccccccccc---------------------------------------------------
Q 036257 227 SQVKCTQCSYCSNKFDPFLDLSLEIAKAD--------------------------------------------------- 255 (418)
Q Consensus 227 ~~~~C~~C~~~s~~~e~f~~l~l~i~~~~--------------------------------------------------- 255 (418)
++..|+.|+.++.+++||++|+|++|...
T Consensus 424 STL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~ 503 (823)
T COG5560 424 STLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMC 503 (823)
T ss_pred ceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeEEE
Confidence 99999999999999999999999998542
Q ss_pred --------------------------------------------------------------------------------
Q 036257 256 -------------------------------------------------------------------------------- 255 (418)
Q Consensus 256 -------------------------------------------------------------------------------- 255 (418)
T Consensus 504 iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE~~ 583 (823)
T COG5560 504 IYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKEFE 583 (823)
T ss_pred EEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 036257 256 -------------------------------------------------------------------------------- 255 (418)
Q Consensus 256 -------------------------------------------------------------------------------- 255 (418)
T Consensus 584 ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~lw 663 (823)
T COG5560 584 ELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLW 663 (823)
T ss_pred HHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCccc
Confidence
Q ss_pred ------------cHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCC-CCCcccceee
Q 036257 256 ------------SVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHD-PGQKNDKKVQ 322 (418)
Q Consensus 256 ------------~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~-~~~K~~~~v~ 322 (418)
+|++||..|.++|.+.- ...+.|++|+....|.|++.|+++|.||+|||+||+... ...|+.+.|+
T Consensus 664 ~~~ei~~~~rtiTL~dCl~eFskpEqLgl-~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVe 742 (823)
T COG5560 664 TIREIGAAERTITLQDCLNEFSKPEQLGL-SDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVE 742 (823)
T ss_pred hhHHhhhccCCCcHHHHHHHhccHhhcCC-cccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhc
Confidence 89999999999999864 455999999999999999999999999999999999765 3589999999
Q ss_pred cC-CCCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEEC-CCCCEEEEeCCceeeecccccCCCCcEEEEEEE
Q 036257 323 FG-STLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRT-SSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVR 400 (418)
Q Consensus 323 fp-~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~-~~~~W~~~dD~~V~~v~~~~v~~~~aYil~Y~r 400 (418)
|| ..|||+.+...-.+...-|.|+||=.|+| ...+|||+||+|+ .++.||+|||++|+++.+++.....||+|||+|
T Consensus 743 yPiddldLs~~~~~~~~p~liydlyavDNHyg-glsgGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFyrr 821 (823)
T COG5560 743 YPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYG-GLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821 (823)
T ss_pred cccccccccceEEeecCcceEEEeeecccccc-ccCCcceeeeeecccCCceEEecCccccccCccccccceeEEEEEEe
Confidence 99 78999887765444558899999999999 8999999999998 567999999999999999999999999999999
Q ss_pred e
Q 036257 401 D 401 (418)
Q Consensus 401 ~ 401 (418)
+
T Consensus 822 k 822 (823)
T COG5560 822 K 822 (823)
T ss_pred c
Confidence 7
No 14
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.3e-54 Score=392.44 Aligned_cols=210 Identities=41% Similarity=0.714 Sum_probs=191.8
Q ss_pred CccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhhhccCC
Q 036257 98 GLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFR 177 (418)
Q Consensus 98 GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~~~~f~ 177 (418)
||.|+||||||||+||+|+++|+||+++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999999987521
Q ss_pred CCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCccc-ccccccccccccccc--
Q 036257 178 NSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSN-KFDPFLDLSLEIAKA-- 254 (418)
Q Consensus 178 ~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~-~~e~f~~l~l~i~~~-- 254 (418)
.||||+||+..||+.|+. .+.++|.|++.+.++|..|+..+. +.++|+.|+|++|..
T Consensus 33 --~QqDa~EFl~~ll~~l~~------------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~ 92 (240)
T cd02662 33 --EQQDAHELFQVLLETLEQ------------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSS 92 (240)
T ss_pred --hhcCHHHHHHHHHHHHHH------------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCC
Confidence 899999999999999983 278899999999999999999866 489999999999976
Q ss_pred ---ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCC--CCCcccceeecCCCCCC
Q 036257 255 ---DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHD--PGQKNDKKVQFGSTLDM 329 (418)
Q Consensus 255 ---~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~--~~~K~~~~v~fp~~Ldl 329 (418)
.+|+++|+.++.+|.+++ |.|++| +..|.++|++|+|||+||.++. ...|+++.|.||..|
T Consensus 93 ~~~~sl~~~L~~~~~~E~l~~----~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l-- 158 (240)
T cd02662 93 GSGTTLEHCLDDFLSTEIIDD----YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL-- 158 (240)
T ss_pred CCCCCHHHHHHHhcCcccccC----cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc--
Confidence 599999999999999987 899999 6689999999999999999876 247999999999988
Q ss_pred CCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEECC---------------------CCCEEEEeCCceeeeccccc
Q 036257 330 KPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTS---------------------SGMWYSLDDNRVVQVNERSV 388 (418)
Q Consensus 330 ~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~---------------------~~~W~~~dD~~V~~v~~~~v 388 (418)
...+|+|+|||+|.| +.++|||+||+|.+ .+.||+|||+.|++++.++|
T Consensus 159 ---------~~~~Y~L~avi~H~G-~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v 228 (240)
T cd02662 159 ---------PKVLYRLRAVVVHYG-SHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEV 228 (240)
T ss_pred ---------CCceEEEEEEEEEec-cCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHH
Confidence 346899999999999 66999999999985 48999999999999999999
Q ss_pred -CCCCcEEEEEE
Q 036257 389 -LEQKAYMLFYV 399 (418)
Q Consensus 389 -~~~~aYil~Y~ 399 (418)
...+||||||+
T Consensus 229 ~~~~~aY~LfYe 240 (240)
T cd02662 229 LEQKSAYMLFYE 240 (240)
T ss_pred hhCCCEEEEEeC
Confidence 88999999995
No 15
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-53 Score=373.00 Aligned_cols=305 Identities=26% Similarity=0.423 Sum_probs=233.3
Q ss_pred cCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCC------CccccccchHHHHHHHHHHHHHHhcCCccChHHHHH
Q 036257 94 RIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQ------SSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVS 167 (418)
Q Consensus 94 ~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~------~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~ 167 (418)
-.|+||.|.|||||||++||||+.+..+...++..-+. ......+......+..+...+.......|+|..|++
T Consensus 69 ~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~~ 148 (415)
T COG5533 69 LPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFID 148 (415)
T ss_pred cCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHHH
Confidence 35799999999999999999999999998855432222 111122222333444444444444567899999999
Q ss_pred HHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcc---h-----------------------hhhhccccccce
Q 036257 168 NLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSES---A-----------------------NAYEKSLVHKIF 221 (418)
Q Consensus 168 ~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~---~-----------------------~~~~~s~i~~~F 221 (418)
.+..+.+.|++..|||++||+.++||.||++++..+..+.. . -..++++|.+.|
T Consensus 149 i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~f 228 (415)
T COG5533 149 ILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTF 228 (415)
T ss_pred HHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHHH
Confidence 99999999999999999999999999999998754433110 0 012358899999
Q ss_pred eeEEEEEEEeCCCCCcccccccccccccccccc--ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCc
Q 036257 222 GGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKA--DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPY 299 (418)
Q Consensus 222 ~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~--~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~ 299 (418)
.|+..++++|..|++.|+++.+|..|.++++.. -.|++|+.+|.++|.+.+.+. |+|++|+++..+.|++.|.++|+
T Consensus 229 ~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~-W~CpkC~~k~ss~K~~~I~~lP~ 307 (415)
T COG5533 229 FGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDA-WRCPKCGRKESSRKRMEILVLPD 307 (415)
T ss_pred hhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCccc-ccCchhcccccchheEEEEecCc
Confidence 999999999999999999999999999998865 468999999999999987655 99999999999999999999999
Q ss_pred eEEEEEeeeecCCC-CCccccee----ecCCCCCCCCCc-CCCCCCCceEEEEEEEEeeecCCCCCceEEEEECCCCCEE
Q 036257 300 VLTIHLKRFRAHDP-GQKNDKKV----QFGSTLDMKPFV-SGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWY 373 (418)
Q Consensus 300 ~L~i~l~Rf~~~~~-~~K~~~~v----~fp~~Ldl~~~~-~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~ 373 (418)
+||||++||...-. ..|+.... ++|-+....+.. ....-.+.+|+|+|||||.| +.++|||+++|+. ++.|+
T Consensus 308 ~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G-~L~gGHY~s~v~~-~~~W~ 385 (415)
T COG5533 308 VLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNG-TLNGGHYFSEVKR-SGTWN 385 (415)
T ss_pred eEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecc-eecCceeEEeeee-cCceE
Confidence 99999999983211 12222211 112111111111 11111346899999999999 9999999999998 58899
Q ss_pred EEeCCceeeecccccC-CCCcEEEEEEEe
Q 036257 374 SLDDNRVVQVNERSVL-EQKAYMLFYVRD 401 (418)
Q Consensus 374 ~~dD~~V~~v~~~~v~-~~~aYil~Y~r~ 401 (418)
.+||+.|+.++...-. ...+|||||+|.
T Consensus 386 ~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 386 VYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred EechhheeeccceecccCCcceEEEEEec
Confidence 9999999999864444 467899999985
No 16
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.7e-50 Score=367.03 Aligned_cols=220 Identities=43% Similarity=0.828 Sum_probs=200.4
Q ss_pred CccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhhhccCC
Q 036257 98 GLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFR 177 (418)
Q Consensus 98 GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~~~~f~ 177 (418)
||.|.|||||+||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999988
Q ss_pred CCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCccccccccccccccccccc--
Q 036257 178 NSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKAD-- 255 (418)
Q Consensus 178 ~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~-- 255 (418)
.||||+||+.+||+.|+ +++.++|+|++..+++|..|+..+...++|+.|+|++|...
T Consensus 21 --~QqDa~Ef~~~ll~~l~------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~~ 80 (230)
T cd02674 21 --DQQDAQEFLLFLLDGLH------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGD 80 (230)
T ss_pred --hhhhHHHHHHHHHHHHh------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccCC
Confidence 89999999999999997 24899999999999999999999999999999999999755
Q ss_pred ----cHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCC-CCCcccceeecC-CCCCC
Q 036257 256 ----SVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHD-PGQKNDKKVQFG-STLDM 329 (418)
Q Consensus 256 ----~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~-~~~K~~~~v~fp-~~Ldl 329 (418)
+|+++|+.++.++.+++.+ .+.|++|++++.+.++..+.++|++|+||++||.++. ...|+...|.|| +.||+
T Consensus 81 ~~~~sl~~~L~~~~~~e~~~~~~-~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l 159 (230)
T cd02674 81 APKVTLEDCLRLFTKEETLDGDN-AWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDL 159 (230)
T ss_pred CCCCCHHHHHHHhcCccccCCCC-ceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccccc
Confidence 9999999999999888654 4999999999999999999999999999999999875 358999999999 56999
Q ss_pred CCCcC-CCCCCCceEEEEEEEEeeecCCCCCceEEEEECCC-CCEEEEeCCceeeecccccCCCCcEEEEEE
Q 036257 330 KPFVS-GSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSS-GMWYSLDDNRVVQVNERSVLEQKAYMLFYV 399 (418)
Q Consensus 330 ~~~~~-~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~-~~W~~~dD~~V~~v~~~~v~~~~aYil~Y~ 399 (418)
.+|+. .......+|+|+|||+|.| +..+|||+||+|... ++|++|||+.|++++.+++...+||||||+
T Consensus 160 ~~~~~~~~~~~~~~Y~L~~vI~H~G-~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 160 TPYVDTRSFTGPFKYDLYAVVNHYG-SLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred ccccCcccCCCCceEEEEEEEEeeC-CCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 88853 2234567899999999999 559999999999954 899999999999999999988999999995
No 17
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-49 Score=382.63 Aligned_cols=294 Identities=24% Similarity=0.391 Sum_probs=252.4
Q ss_pred ccccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCC--CCCccccccchHHHHHHHHHHHHHHhc----------
Q 036257 89 GTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGK--HQSSCHIAGFCALCAIQKHVSRALQAT---------- 156 (418)
Q Consensus 89 ~~~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~---------- 156 (418)
.+-+.++++||.|+||+||||||+|+|+.+|.|....+... .......+..++-|++.+++..|....
T Consensus 300 ~p~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~ 379 (763)
T KOG0944|consen 300 EPLFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSN 379 (763)
T ss_pred ccccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccc
Confidence 34678888999999999999999999999999998887652 223344566789999999999988743
Q ss_pred CCccChHHHHHHHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCC
Q 036257 157 GRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSY 236 (418)
Q Consensus 157 ~~~v~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~ 236 (418)
...|+|..|...+++.++.|...+||||+|||.+||+.|.+.....- .-+.++|...+..++.|..|++
T Consensus 380 qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~~-----------~nptd~frF~ve~Rv~C~~c~k 448 (763)
T KOG0944|consen 380 QNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSSL-----------PNPTDLFRFEVEDRVSCLGCRK 448 (763)
T ss_pred cCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccccC-----------CCHHHHHHhhhhhhhhhhcccc
Confidence 24689999999999999999999999999999999999987543221 2378899999999999999999
Q ss_pred cccccccccccccccccc------ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeec
Q 036257 237 CSNKFDPFLDLSLEIAKA------DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRA 310 (418)
Q Consensus 237 ~s~~~e~f~~l~l~i~~~------~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~ 310 (418)
++.+.++-+.|.|++|.. .++..+|+.|+.+ .+++ |+|..|+.+..+.++..+.++|+||+||+.||.+
T Consensus 449 VrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~ 523 (763)
T KOG0944|consen 449 VRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDD----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTL 523 (763)
T ss_pred ccccchhheeeEeeccccccccccCCHHHHHHHhcCC-cchh----hhhHhhcCccccccccccccCCceEEEEeeEEEe
Confidence 999999999999999853 4999999999999 4444 9999999999999999999999999999999998
Q ss_pred CCC-CCcccceeecCCCCCCCCCcCCCC----------------------------------------------------
Q 036257 311 HDP-GQKNDKKVQFGSTLDMKPFVSGSY---------------------------------------------------- 337 (418)
Q Consensus 311 ~~~-~~K~~~~v~fp~~Ldl~~~~~~~~---------------------------------------------------- 337 (418)
.+. ..|....+++|+.||++.|...+.
T Consensus 524 ~dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA 603 (763)
T KOG0944|consen 524 QDWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAA 603 (763)
T ss_pred cCceeeeeccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHH
Confidence 654 478999999999999988865210
Q ss_pred --------------------------------------------------------------------------------
Q 036257 338 -------------------------------------------------------------------------------- 337 (418)
Q Consensus 338 -------------------------------------------------------------------------------- 337 (418)
T Consensus 604 ~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~ 683 (763)
T KOG0944|consen 604 SNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAE 683 (763)
T ss_pred HHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCc
Confidence
Q ss_pred ------------------CCCceEEEEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCceeeecccccCCCCcEEEEEE
Q 036257 338 ------------------EGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYV 399 (418)
Q Consensus 338 ------------------~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~v~~~~v~~~~aYil~Y~ 399 (418)
++..+|.|.|+|+|.|.++++|||+|++|. .|+|+.|||++|- ..++-.+..+||+||+
T Consensus 684 ~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sGHYV~hirK-egkWVlfNDeKv~--~S~~ppK~lgYvY~y~ 760 (763)
T KOG0944|consen 684 GESSSAIESESTPSGTGKDGPGKYALFAFISHMGTSAHSGHYVCHIRK-EGKWVLFNDEKVA--ASQEPPKDLGYVYLYT 760 (763)
T ss_pred CCCCCcchhhcCCcccCCCCCcceeEEEEEecCCCCCCCcceEEEEee-cCcEEEEcchhhh--hccCChhhcceEEEEE
Confidence 125689999999999999999999999999 5889999999998 3455557899999999
Q ss_pred Ee
Q 036257 400 RD 401 (418)
Q Consensus 400 r~ 401 (418)
|.
T Consensus 761 R~ 762 (763)
T KOG0944|consen 761 RI 762 (763)
T ss_pred ec
Confidence 95
No 18
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6e-48 Score=366.79 Aligned_cols=270 Identities=21% Similarity=0.367 Sum_probs=217.2
Q ss_pred CCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCc----------------cc----cccchHHHHHHHHHHHHHHh
Q 036257 96 GAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSS----------------CH----IAGFCALCAIQKHVSRALQA 155 (418)
Q Consensus 96 ~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~----------------~~----~~~~~~l~~l~~~~~~~~~~ 155 (418)
|+||.|+||||||||+||+|+++|+||++++....... .. ....+++.+|+.+|..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 69999999999999999999999999999998542210 00 11236889999999999988
Q ss_pred cCCccChHHHHHHHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCC----cchhhhhccccccceeeEEEEEEEe
Q 036257 156 TGRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPS----ESANAYEKSLVHKIFGGRLRSQVKC 231 (418)
Q Consensus 156 ~~~~v~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~----~~~~~~~~s~i~~~F~g~~~~~~~C 231 (418)
....++|..++..+.. .||||+||+..||+.|+.++...+... ........++|+++|.|++.+.++|
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c 152 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVP 152 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEe
Confidence 8899999999887642 899999999999999999987554311 1122345689999999999999999
Q ss_pred CCCC---Cccccccccccccccccc----------cccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCC
Q 036257 232 TQCS---YCSNKFDPFLDLSLEIAK----------ADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAP 298 (418)
Q Consensus 232 ~~C~---~~s~~~e~f~~l~l~i~~----------~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP 298 (418)
..|+ ..+.+.|+|++|+|+|+. ..+|.++|+.|+..|. |.++|
T Consensus 153 ~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~------------------------~~~~P 208 (343)
T cd02666 153 ESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS------------------------LTKLP 208 (343)
T ss_pred cccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh------------------------hccCC
Confidence 9997 788899999999999985 6899999999997774 78999
Q ss_pred ceEEEEEeeeecCCC-CCcccceeecCCCCCCCCCcCCC----------------------------CCCCceEEEEEEE
Q 036257 299 YVLTIHLKRFRAHDP-GQKNDKKVQFGSTLDMKPFVSGS----------------------------YEGDLKYTLYGVL 349 (418)
Q Consensus 299 ~~L~i~l~Rf~~~~~-~~K~~~~v~fp~~Ldl~~~~~~~----------------------------~~~~~~Y~L~avI 349 (418)
++|.||++ +.+... ..+..++.++|...|..+++... .....+|+|+|||
T Consensus 209 ~vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv 287 (343)
T cd02666 209 QRSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVF 287 (343)
T ss_pred HHHHHHHh-hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEE
Confidence 99999998 332221 24555666666655554443210 1146789999999
Q ss_pred EeeecCCCCCceEEEEECC-CCCEEEEeCCceeeecccccCC------CCcEEEEEE
Q 036257 350 VHHGWSTHSGHYYCFVRTS-SGMWYSLDDNRVVQVNERSVLE------QKAYMLFYV 399 (418)
Q Consensus 350 ~H~G~~~~~GHY~a~vr~~-~~~W~~~dD~~V~~v~~~~v~~------~~aYil~Y~ 399 (418)
+|.| +.++|||++|+|+. ++.||+|||..|++++.++++. .+||+|+|+
T Consensus 288 ~H~G-~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 288 IHRG-EASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred Eeec-CCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 9999 67999999999973 5899999999999999988885 599999994
No 19
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-50 Score=387.84 Aligned_cols=312 Identities=29% Similarity=0.489 Sum_probs=268.8
Q ss_pred ccccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccc--cccchHHHHHHHHHHHHHHhcCCccChHHHH
Q 036257 89 GTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCH--IAGFCALCAIQKHVSRALQATGRILAPKDLV 166 (418)
Q Consensus 89 ~~~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~--~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~ 166 (418)
|.+...+.|||.|-|+|||||+++|-|.++|-+|..++...+..... .....++|.++.+|..+..+.-+++-|..|.
T Consensus 88 gsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~W 167 (944)
T KOG1866|consen 88 GSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFW 167 (944)
T ss_pred CCCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHH
Confidence 33344567999999999999999999999999999887755542211 1223389999999999999998999999999
Q ss_pred HHHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCcccccccccc
Q 036257 167 SNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLD 246 (418)
Q Consensus 167 ~~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~ 246 (418)
+.++.........+||||.||+..|||.+.+.+...+.+. ++.+.|+|....+..|..|-+.....|+|..
T Consensus 168 k~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p~---------lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~ 238 (944)
T KOG1866|consen 168 KQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHPQ---------LFSNTFGGSYSDQKICQGCPHRYECEESFTT 238 (944)
T ss_pred HHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCcH---------HHHHHhcCccchhhhhccCCcccCcccccee
Confidence 9998777778889999999999999999999887766554 4678899999999999999999999999999
Q ss_pred ccccccccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCC---CCCcccceeec
Q 036257 247 LSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHD---PGQKNDKKVQF 323 (418)
Q Consensus 247 l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~---~~~K~~~~v~f 323 (418)
|+|+|. ..+|+++|++|.+.++++|. ++|+|++|++|+...++..|.+||++|.|||+||.++- ...|-++.+.|
T Consensus 239 l~l~i~-~~nLeesLeqfv~gevlEG~-nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frF 316 (944)
T KOG1866|consen 239 LNLDIR-HQNLEESLEQFVKGEVLEGA-NAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRF 316 (944)
T ss_pred eeeecc-cchHHHHHHHHHHHHHhcCc-chhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhccc
Confidence 999999 89999999999999999975 55999999999999999999999999999999999874 34799999999
Q ss_pred CCCCCCCCCcCCC-----------------CCCCceEEEEEEEEeeecCCCCCceEEEEEC----CCCCEEEEeCCceee
Q 036257 324 GSTLDMKPFVSGS-----------------YEGDLKYTLYGVLVHHGWSTHSGHYYCFVRT----SSGMWYSLDDNRVVQ 382 (418)
Q Consensus 324 p~~Ldl~~~~~~~-----------------~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~----~~~~W~~~dD~~V~~ 382 (418)
|.+|||.+|+..+ ..++.+|+|+||++|+| .+++|||++|++. ..++||+|||..|++
T Consensus 317 P~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSG-qAsaGHYySfIk~rr~~~~~kWykfnD~~Vte 395 (944)
T KOG1866|consen 317 PRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSG-QASAGHYYSFIKQRRGEDGNKWYKFNDGDVTE 395 (944)
T ss_pred chhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecc-cccCcchhhhhhhhccCCCCceEeccCccccc
Confidence 9999999997532 23467999999999999 8999999999965 357999999999999
Q ss_pred ecccccCC--------------------CCcEEEEEEEecCCCCCCCChh
Q 036257 383 VNERSVLE--------------------QKAYMLFYVRDRKNIVPRKPTD 412 (418)
Q Consensus 383 v~~~~v~~--------------------~~aYil~Y~r~~~~~~~~~p~~ 412 (418)
.+..++.. =+||||||+|.+-.+.+..|..
T Consensus 396 ~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~~~~p~~ 445 (944)
T KOG1866|consen 396 CKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPTDDEPIR 445 (944)
T ss_pred cchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCccccccc
Confidence 87765542 1799999999988776666654
No 20
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=2e-47 Score=356.12 Aligned_cols=249 Identities=36% Similarity=0.637 Sum_probs=205.2
Q ss_pred CCCccccCChhhHHHHHHHHhCCHHHHHHHhcCC-----CCCccccccchHHHHHHHHHHHHHHh--cCCccChHHHHHH
Q 036257 96 GAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGK-----HQSSCHIAGFCALCAIQKHVSRALQA--TGRILAPKDLVSN 168 (418)
Q Consensus 96 ~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~-----~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~v~p~~~~~~ 168 (418)
|+||.|.||||||||+||+|+++|+||++++... ..........++++.+..++..++.. ....+.|..++.+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 5899999999999999999999999999999751 11122223346899999999999988 6788999999999
Q ss_pred HHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCC--CCcchhhhhccccccceeeEEEEEEEeCCCCCcccccccccc
Q 036257 169 LRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGV--PSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLD 246 (418)
Q Consensus 169 l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~--~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~ 246 (418)
+....+.|..+.||||+||+..||+.|++++..... ..........+++.++|++++...+.|..|+..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--------- 151 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--------- 151 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---------
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---------
Confidence 999999999999999999999999999998765432 001222345678899999999999999999876
Q ss_pred ccccccccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCC---CCcccceeec
Q 036257 247 LSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDP---GQKNDKKVQF 323 (418)
Q Consensus 247 l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~---~~K~~~~v~f 323 (418)
+..+.++|++|+|+++||.++.. ..|+...|.|
T Consensus 152 --------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~ 187 (269)
T PF00443_consen 152 --------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEF 187 (269)
T ss_dssp --------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB-
T ss_pred --------------------------------------------ccccccccceeeeccccceecccccccccccccccc
Confidence 45689999999999999976543 4799999999
Q ss_pred C-CCCCCCCCcCCCCC---CCceEEEEEEEEeeecCCCCCceEEEEECCC-CCEEEEeCCceeeecccccCC---CCcEE
Q 036257 324 G-STLDMKPFVSGSYE---GDLKYTLYGVLVHHGWSTHSGHYYCFVRTSS-GMWYSLDDNRVVQVNERSVLE---QKAYM 395 (418)
Q Consensus 324 p-~~Ldl~~~~~~~~~---~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~-~~W~~~dD~~V~~v~~~~v~~---~~aYi 395 (418)
| +.|||.+++..... ...+|+|+|||+|.| +.++|||+||||+.+ ++|++|||+.|+++++++|.. .+|||
T Consensus 188 ~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yl 266 (269)
T PF00443_consen 188 PLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG-SADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYL 266 (269)
T ss_dssp -SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES-STTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCEEE
T ss_pred Cchhhhhhhhhccccccccccceeeehhhhcccc-ccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCceEE
Confidence 9 79999999877554 368999999999999 999999999998854 469999999999999999998 99999
Q ss_pred EEE
Q 036257 396 LFY 398 (418)
Q Consensus 396 l~Y 398 (418)
|||
T Consensus 267 l~Y 269 (269)
T PF00443_consen 267 LFY 269 (269)
T ss_dssp EEE
T ss_pred EeC
Confidence 999
No 21
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-47 Score=342.73 Aligned_cols=218 Identities=24% Similarity=0.375 Sum_probs=185.1
Q ss_pred CccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhhhccCC
Q 036257 98 GLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFR 177 (418)
Q Consensus 98 GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~~~~f~ 177 (418)
||.|.|||||+|++.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999976
Q ss_pred CCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCccccccccccccccccccccH
Q 036257 178 NSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSV 257 (418)
Q Consensus 178 ~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~~l 257 (418)
.||||+||+..||+.|++++....... .......++|.++|+|++.++..| |+..+.+.|+|++|+|+|.+..+|
T Consensus 21 --~QQDa~Ef~~~Lld~Le~~l~~~~~~~-~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~~~L 95 (228)
T cd02665 21 --QQQDVSEFTHLLLDWLEDAFQAAAEAI-SPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGYGNL 95 (228)
T ss_pred --HHHHHHHHHHHHHHHHHHHhccccccc-cccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCCCCH
Confidence 799999999999999999876432211 122245678999999999987776 777889999999999999999999
Q ss_pred HHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCC-CCCcccceeecCCCCCCCCCcCCC
Q 036257 258 LKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHD-PGQKNDKKVQFGSTLDMKPFVSGS 336 (418)
Q Consensus 258 ~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~-~~~K~~~~v~fp~~Ldl~~~~~~~ 336 (418)
+++|+.++.++.+++. .|. +...+.++..|.++|+||+|||+||.++. ...|+.+.|.||..|
T Consensus 96 ~e~L~~~~~ee~l~~~----~~~---~~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l--------- 159 (228)
T cd02665 96 HECLEAAMFEGEVELL----PSD---HSVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQII--------- 159 (228)
T ss_pred HHHHHHhhhhcccccc----ccc---chhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCcc---------
Confidence 9999999988887752 222 23345667789999999999999999875 458999999999887
Q ss_pred CCCCceEEEEEEEEeeecCCCCCceEEEEEC-CCCCEEEEeCCceeeecccccCC--------CCcEEEEEE
Q 036257 337 YEGDLKYTLYGVLVHHGWSTHSGHYYCFVRT-SSGMWYSLDDNRVVQVNERSVLE--------QKAYMLFYV 399 (418)
Q Consensus 337 ~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~-~~~~W~~~dD~~V~~v~~~~v~~--------~~aYil~Y~ 399 (418)
....|+|+|||+|.| ++++|||+||+|. .+++||+|||+.|++++.++|.. ..||||||.
T Consensus 160 --~~~~Y~L~aVi~H~G-~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 160 --QQVPYELHAVLVHEG-QANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred --CCceeEEEEEEEecC-CCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 235899999999999 6999999999986 47899999999999999998863 489999994
No 22
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-48 Score=387.67 Aligned_cols=311 Identities=34% Similarity=0.521 Sum_probs=257.7
Q ss_pred ccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccc----cccchHHHHHHHHHHHHHHh-cCCccChHHH
Q 036257 91 TFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCH----IAGFCALCAIQKHVSRALQA-TGRILAPKDL 165 (418)
Q Consensus 91 ~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~----~~~~~~l~~l~~~~~~~~~~-~~~~v~p~~~ 165 (418)
+-..+.+||.|+|||||||++||||+.++.||+.+++..+..... .....+..+....+...|-. ....+.|..|
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f 375 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRF 375 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHH
Confidence 335667999999999999999999999999997777653332222 22223445555555555554 5567899999
Q ss_pred HHHHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCC------------------cch--------hhhhcccccc
Q 036257 166 VSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPS------------------ESA--------NAYEKSLVHK 219 (418)
Q Consensus 166 ~~~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~------------------~~~--------~~~~~s~i~~ 219 (418)
+..+....+.|.++.|||++||+.++++.||+++.....+. ... .....+.|.+
T Consensus 376 ~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~ 455 (653)
T KOG1868|consen 376 IRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGD 455 (653)
T ss_pred HHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHH
Confidence 99999999999998899999999999999999987643210 000 0113345899
Q ss_pred ceeeEEEEEEEeCCCCCcccccccccccccccccc------ccHHHHHhhccccccccCCCcccccccccccceee--EE
Q 036257 220 IFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKA------DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRAL--KQ 291 (418)
Q Consensus 220 ~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~------~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~--~~ 291 (418)
+|.|++.+.++|..|+..+.++++|.+++|+||.. .+|++|+..|+..|.+++.+ .|.|++|+++.... |+
T Consensus 456 lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~-~w~Cp~c~~~~~~~~lK~ 534 (653)
T KOG1868|consen 456 LFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDE-AWLCPRCKHKESSKTLKK 534 (653)
T ss_pred HHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhccccc-ccCCccccCcccccccce
Confidence 99999999999999999999999999999999864 34999999999999999755 49999999998885 99
Q ss_pred EEEeeCCceEEEEEeeeecCC-CCCcccceeecCC-CCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEEC-C
Q 036257 292 LTVYKAPYVLTIHLKRFRAHD-PGQKNDKKVQFGS-TLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRT-S 368 (418)
Q Consensus 292 ~~i~~lP~~L~i~l~Rf~~~~-~~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~-~ 368 (418)
..|.++|++|++||+||..++ ...|...-|+||. ..++.++..........|+|+||++|.| +..+|||+|+|+. .
T Consensus 535 ~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G-tl~sGHYta~~~~~~ 613 (653)
T KOG1868|consen 535 LTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSG-TLNSGHYTAYVYKNE 613 (653)
T ss_pred eeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCCCccceeeEEEEeccC-cccCCceEEEEeecC
Confidence 999999999999999999875 5689999999994 5667666666666667899999999999 9999999999976 5
Q ss_pred CCCEEEEeCCceeeecccccCCCCcEEEEEEEecC
Q 036257 369 SGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDRK 403 (418)
Q Consensus 369 ~~~W~~~dD~~V~~v~~~~v~~~~aYil~Y~r~~~ 403 (418)
.+.|+.|||+.|+.++...+-...||||||+|.+.
T Consensus 614 ~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~ 648 (653)
T KOG1868|consen 614 KQRWFTFDDSEVSPISETDVGSSSAYILFYERLGI 648 (653)
T ss_pred CCceEEecCeeeeccccccccCCCceEEEeecCCc
Confidence 78899999999999988888889999999999754
No 23
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-46 Score=341.15 Aligned_cols=236 Identities=26% Similarity=0.442 Sum_probs=187.2
Q ss_pred ccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhhhccCCC
Q 036257 99 LENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFRN 178 (418)
Q Consensus 99 L~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~~~~f~~ 178 (418)
|.|.||.||+||.+|+|. .+++..+.|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~---------------------------------------------------~i~~~~~~F~~ 30 (245)
T cd02673 2 LVNTGNSCYFNSTMQALS---------------------------------------------------SIGKINTEFDN 30 (245)
T ss_pred ceecCCeeeehhHHHHHH---------------------------------------------------HHhhhhhhcCC
Confidence 789999999999999992 13445668999
Q ss_pred CCcCcHHHHHHHHHHHHhhhcCCCCCCCc-chhhhhccccccceeeEEEEEEEeCCCCCcccccccccccccccccc--c
Q 036257 179 SRQEDAHEYMVNLLESMHKCCLPSGVPSE-SANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKA--D 255 (418)
Q Consensus 179 ~~QqDa~Efl~~ll~~L~~~~~~~~~~~~-~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~--~ 255 (418)
++||||||||.+||+.|++++........ ...........+.|+|++.+.++|..|++.+.+.++|++|+|+++.. .
T Consensus 31 ~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~ 110 (245)
T cd02673 31 DDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLD 110 (245)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCCcc
Confidence 99999999999999999987643211110 00111122345789999999999999999999999999999999874 5
Q ss_pred cHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCCCCcccceeecCCCCCCCCCcCC
Q 036257 256 SVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFVSG 335 (418)
Q Consensus 256 ~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~~~K~~~~v~fp~~Ldl~~~~~~ 335 (418)
.+++++..+...+.++ |.|++|+.+ .+.++.+|.++|++|+|||+||.+.. +....+.. ..+++.++..
T Consensus 111 ~le~l~~~~~~~~~~e-----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~---~~~~~~~~-~~~~~~~~~~- 179 (245)
T cd02673 111 IDELLISNFKTWSPIE-----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI---ATSDYLKK-NEEIMKKYCG- 179 (245)
T ss_pred hHHHHHHHhhcccccC-----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc---cccccccc-cccccccccC-
Confidence 6777777777665553 899999986 78888899999999999999997643 11122222 2355666654
Q ss_pred CCCCCceEEEEEEEEeeecCCCCCceEEEEECC--CCCEEEEeCCceeeecccccC---CCCcEEEEEE
Q 036257 336 SYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTS--SGMWYSLDDNRVVQVNERSVL---EQKAYMLFYV 399 (418)
Q Consensus 336 ~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~--~~~W~~~dD~~V~~v~~~~v~---~~~aYil~Y~ 399 (418)
...+|+|+|||+|.|.+.++|||+||+|.. +++||.|||+.|+++++++|+ .++||||||+
T Consensus 180 ---~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 180 ---TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred ---CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 346799999999999668999999999984 589999999999999999998 5799999996
No 24
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-48 Score=373.62 Aligned_cols=294 Identities=29% Similarity=0.484 Sum_probs=249.3
Q ss_pred ccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhh
Q 036257 93 RRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCI 172 (418)
Q Consensus 93 ~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~ 172 (418)
..|++||.|.|.||||||+||+|+.+..||+.+.......+ ........+|++.|.. ++....+++..+|.....
T Consensus 190 eTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p--~grdSValaLQr~Fyn-lq~~~~PvdTteltrsfg-- 264 (1089)
T COG5077 190 ETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHP--RGRDSVALALQRLFYN-LQTGEEPVDTTELTRSFG-- 264 (1089)
T ss_pred ceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCC--CccchHHHHHHHHHHH-HhccCCCcchHHhhhhcC--
Confidence 56789999999999999999999999999999976442221 1122244577777764 456677899999988875
Q ss_pred hccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCcccccccccccccccc
Q 036257 173 SRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIA 252 (418)
Q Consensus 173 ~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~ 252 (418)
+..+....|||.|||-+-|.|.|++.+..+.. ..-+..+|-|++.+.++|..-...|.+.+.||++.|++.
T Consensus 265 Wds~dsf~QHDiqEfnrVl~DnLEksmrgt~V---------Enaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK 335 (1089)
T COG5077 265 WDSDDSFMQHDIQEFNRVLQDNLEKSMRGTVV---------ENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVK 335 (1089)
T ss_pred cccchHHHHHhHHHHHHHHHHHHHHhhcCChh---------hhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhccc
Confidence 33566788999999999999999986543322 233788999999999999999999999999999999999
Q ss_pred ccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCC---CCCcccceeecCCCCCC
Q 036257 253 KADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHD---PGQKNDKKVQFGSTLDM 329 (418)
Q Consensus 253 ~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~---~~~K~~~~v~fp~~Ldl 329 (418)
+.++|+++++.|.+.|+++|++ .|.|++-|- +.|.|-.-+.++||+|.+||+||.++- ...|+++..+||.++||
T Consensus 336 ~~knLqeSfr~yIqvE~l~GdN-~Y~ae~~Gl-qdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl 413 (1089)
T COG5077 336 GMKNLQESFRRYIQVETLDGDN-RYNAEKHGL-QDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDL 413 (1089)
T ss_pred chhhHHHHHHHhhhheeccCCc-ccccccccc-hhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhcc
Confidence 9999999999999999999755 499998654 688899999999999999999999873 35899999999999999
Q ss_pred CCCcCCCC----CCCceEEEEEEEEeeecCCCCCceEEEEEC-CCCCEEEEeCCceeeecccccCC--------------
Q 036257 330 KPFVSGSY----EGDLKYTLYGVLVHHGWSTHSGHYYCFVRT-SSGMWYSLDDNRVVQVNERSVLE-------------- 390 (418)
Q Consensus 330 ~~~~~~~~----~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~-~~~~W~~~dD~~V~~v~~~~v~~-------------- 390 (418)
.+|++... +.++.|.|+||++|.| +.+.|||+|+++. .+|+||+|||++|+.++..+|+.
T Consensus 414 ~pfld~da~ksen~d~vY~LygVlVHsG-Dl~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r 492 (1089)
T COG5077 414 LPFLDRDADKSENSDAVYVLYGVLVHSG-DLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIR 492 (1089)
T ss_pred ccccCchhhhhcccCcEEEEEEEEEecc-ccCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCccccc
Confidence 99998643 3458999999999999 9999999999995 58999999999999999988874
Q ss_pred --------CCcEEEEEEEecC
Q 036257 391 --------QKAYMLFYVRDRK 403 (418)
Q Consensus 391 --------~~aYil~Y~r~~~ 403 (418)
..||||+|-|++.
T Consensus 493 ~~~~~kRfmsAYmLvYlRks~ 513 (1089)
T COG5077 493 DHSGIKRFMSAYMLVYLRKSM 513 (1089)
T ss_pred CCchhhhhhhhheeeeehHhH
Confidence 3689999999866
No 25
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-46 Score=363.27 Aligned_cols=311 Identities=36% Similarity=0.608 Sum_probs=270.1
Q ss_pred cccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCcccc-ccchHHHHHHHHHHHHHHhc-CCccChHHHHH
Q 036257 90 TTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHI-AGFCALCAIQKHVSRALQAT-GRILAPKDLVS 167 (418)
Q Consensus 90 ~~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~-~~~v~p~~~~~ 167 (418)
..+.-+.+||.|+|+||+||++||+|.+.+..++..+...+...... ...|+.|++.+++..+++.. ...++|..++.
T Consensus 155 ~~~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~ 234 (492)
T KOG1867|consen 155 STTALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLN 234 (492)
T ss_pred ceeeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHH
Confidence 44566789999999999999999999999999999888776643333 37889999999999999998 99999999999
Q ss_pred HHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCC--CcchhhhhccccccceeeEEEEEEEeCCCCCccccccccc
Q 036257 168 NLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVP--SESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFL 245 (418)
Q Consensus 168 ~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~--~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~ 245 (418)
.+....+.+.++.|||++||+..+++.++.+....+.. ....+....++++..|.|.+.+.++|..|+..+...++|+
T Consensus 235 ~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~ 314 (492)
T KOG1867|consen 235 LVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFM 314 (492)
T ss_pred HHHHhCcccccccccchHHHHHHhcccccccccccccccccccCCcccccccceeecceeccceeehhhcceeeeccCcc
Confidence 99999999999999999999999999999887111111 0111124478999999999999999999999999999999
Q ss_pred ccccccccc----------ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCC--
Q 036257 246 DLSLEIAKA----------DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDP-- 313 (418)
Q Consensus 246 ~l~l~i~~~----------~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~-- 313 (418)
+|+|+||.. ..+.+++..+...+......+ +.|..|+.+..+.++..+..+|.+|.+|++||.+...
T Consensus 315 disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~-~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~ 393 (492)
T KOG1867|consen 315 DISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSK-YKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGA 393 (492)
T ss_pred ceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccc-cccCCcccccccccccccccCCceeeeeecccccccccc
Confidence 999999854 568999999888887665444 8999999999999999999999999999999998653
Q ss_pred CCcccceeecCCCCCCCCCcCCC-----CCCCceEEEEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCceeeeccccc
Q 036257 314 GQKNDKKVQFGSTLDMKPFVSGS-----YEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSV 388 (418)
Q Consensus 314 ~~K~~~~v~fp~~Ldl~~~~~~~-----~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~v~~~~v 388 (418)
..|+...|.||..|+|.+|+..+ ...+..|+|.|||+|+| +.++|||+||.|. .+.||++||+.|+.++.++|
T Consensus 394 ~~ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G-~~~SGHY~aY~r~-~~~~~~~dDs~v~~~s~~eV 471 (492)
T KOG1867|consen 394 REKIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHG-TVGSGHYVAYRRQ-SGGWFKCDDSTVTKVSEEEV 471 (492)
T ss_pred ccccCcccccchhhcCCccccccccccCCCCCceEEEEEEEEecc-CCCCCceEEEEEe-CCCcEEEcCeEEEEeeHHHh
Confidence 24999999999999999998742 12468999999999999 6999999999999 77799999999999999999
Q ss_pred CCCCcEEEEEEEecC
Q 036257 389 LEQKAYMLFYVRDRK 403 (418)
Q Consensus 389 ~~~~aYil~Y~r~~~ 403 (418)
++.+||+|||.+...
T Consensus 472 l~~~aylLFY~~~~~ 486 (492)
T KOG1867|consen 472 LSSQAYLLFYTQEQV 486 (492)
T ss_pred hhchhhheehhHHhh
Confidence 999999999988644
No 26
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.9e-44 Score=328.06 Aligned_cols=235 Identities=43% Similarity=0.735 Sum_probs=202.8
Q ss_pred CccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhhhccCC
Q 036257 98 GLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFR 177 (418)
Q Consensus 98 GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~~~~f~ 177 (418)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999988
Q ss_pred CCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCccccccccccccccccc----
Q 036257 178 NSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAK---- 253 (418)
Q Consensus 178 ~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~---- 253 (418)
.||||+|||..+|+.|+.++...... ........+.+.++|.|.+...+.|..|+..+.....+..+.|++|.
T Consensus 21 --~q~Da~E~l~~ll~~l~~~~~~~~~~-~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~~ 97 (255)
T cd02257 21 --EQQDAHEFLLFLLDKLHEELKKSSKR-TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLP 97 (255)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhccc-ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCCC
Confidence 89999999999999999887543211 11112235679999999999999999998877777777777777775
Q ss_pred cccHHHHHhhccccccccCCCccccccccc--ccceeeEEEEEeeCCceEEEEEeeeecCC--CCCcccceeecCCCCCC
Q 036257 254 ADSVLKALNNFTAAELLDGGEKEYHCQRCK--QKVRALKQLTVYKAPYVLTIHLKRFRAHD--PGQKNDKKVQFGSTLDM 329 (418)
Q Consensus 254 ~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~--~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~--~~~K~~~~v~fp~~Ldl 329 (418)
..+|+++|+.++..+.+.+ +.|..|+ +...+.++..+.++|++|+|+++||.++. ...|+...|.||..|++
T Consensus 98 ~~~l~~~l~~~~~~e~~~~----~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~ 173 (255)
T cd02257 98 QVSLEDCLEKFFKEEILEG----DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDL 173 (255)
T ss_pred CCcHHHHHHHhhhhhccCC----CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccC
Confidence 4799999999999998886 7899998 67889999999999999999999999774 45899999999999999
Q ss_pred CCCcCC------CCCCCceEEEEEEEEeeecCCCCCceEEEEECCC-CCEEEEeCCceeeeccccc-----CCCCcEEEE
Q 036257 330 KPFVSG------SYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSS-GMWYSLDDNRVVQVNERSV-----LEQKAYMLF 397 (418)
Q Consensus 330 ~~~~~~------~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~-~~W~~~dD~~V~~v~~~~v-----~~~~aYil~ 397 (418)
..++.. ......+|+|+|||+|.|.+.++|||+||+|... ++||+|||..|++++.+++ ...+||+||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~ 253 (255)
T cd02257 174 SPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILF 253 (255)
T ss_pred ccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEEE
Confidence 888742 3345679999999999996669999999999965 9999999999999999998 468999999
Q ss_pred EE
Q 036257 398 YV 399 (418)
Q Consensus 398 Y~ 399 (418)
|+
T Consensus 254 Y~ 255 (255)
T cd02257 254 YE 255 (255)
T ss_pred EC
Confidence 95
No 27
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-44 Score=352.01 Aligned_cols=144 Identities=39% Similarity=0.639 Sum_probs=124.4
Q ss_pred cHHHHHhhccccccccCCCccccccccccc---------------------------ceeeEEEEEeeCCceEEEEEeee
Q 036257 256 SVLKALNNFTAAELLDGGEKEYHCQRCKQK---------------------------VRALKQLTVYKAPYVLTIHLKRF 308 (418)
Q Consensus 256 ~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~---------------------------~~~~~~~~i~~lP~~L~i~l~Rf 308 (418)
+++.||.+|++.|++.|.+ ++.|+.|.+. ..+.++..|..+||||+|||+||
T Consensus 679 Svq~CL~nFT~~E~Ls~~N-~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf 757 (877)
T KOG1873|consen 679 SVQRCLKNFTKVEILSGDN-KWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRF 757 (877)
T ss_pred cHHHHHHhhhhhhhccccc-chhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhh
Confidence 9999999999999998755 4999999651 12467788999999999999999
Q ss_pred ecCCC--CCcccceeecCCCCCCCCCcCCC-----CCCCceEEEEEEEEeeecCCCCCceEEEEEC--------------
Q 036257 309 RAHDP--GQKNDKKVQFGSTLDMKPFVSGS-----YEGDLKYTLYGVLVHHGWSTHSGHYYCFVRT-------------- 367 (418)
Q Consensus 309 ~~~~~--~~K~~~~v~fp~~Ldl~~~~~~~-----~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~-------------- 367 (418)
..+.. ..|.+..+.|++.+||.+|+..- ......|+|.|+|.|.| ++..|||++|+|.
T Consensus 758 ~q~~~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsg-tm~~ghyvayv~~~t~~~~~~~~~~~~ 836 (877)
T KOG1873|consen 758 FQDIRGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSG-TMSYGHYVAYVRGGTFLDLSAPSNSKD 836 (877)
T ss_pred hhhhhchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceeccc-cccCCcchhhhhccchhhccCcccccc
Confidence 87654 37999999999999999987631 12456899999999999 9999999999974
Q ss_pred -------CCCCEEEEeCCceeeecccccCCCCcEEEEEEEe
Q 036257 368 -------SSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRD 401 (418)
Q Consensus 368 -------~~~~W~~~dD~~V~~v~~~~v~~~~aYil~Y~r~ 401 (418)
+.++||.+.|+.|+++++++|++.+||||||||.
T Consensus 837 ~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 837 FESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred chhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 2478999999999999999999999999999994
No 28
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-43 Score=329.74 Aligned_cols=290 Identities=23% Similarity=0.404 Sum_probs=245.1
Q ss_pred CCCccccCChhhHHHHHHHHhCCHHHHHHHhc--CCCCCccccccchHHHHHHHHHHHHHHhc----CCccChHHHHHHH
Q 036257 96 GAGLENLGNTCFLNSVLQCLTYTEPLAAYLQS--GKHQSSCHIAGFCALCAIQKHVSRALQAT----GRILAPKDLVSNL 169 (418)
Q Consensus 96 ~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~----~~~v~p~~~~~~l 169 (418)
++||.|+||+||+||+||.|+....+.-.+.. ......+..+..|+.|++.+++..+.... ...++|..|...+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~i 382 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLI 382 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHH
Confidence 79999999999999999999998777765543 34444556677889999999999888765 2468999999999
Q ss_pred HhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCccccccccccccc
Q 036257 170 RCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSL 249 (418)
Q Consensus 170 ~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l 249 (418)
+.-.+.|...+||||+|||.+||+.|.+.... ...+.|.++|..++..++.|..|+.++..+++...+.+
T Consensus 383 gq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S----------~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i 452 (749)
T COG5207 383 GQDHPEFGKFAQQDAHEFLLFLLEKIRKGERS----------YLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICI 452 (749)
T ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHhhccch----------hcCCCcchhhhhhhcceecccccccccccccceEEEEe
Confidence 99999999999999999999999999874322 23455889999999999999999999999999988888
Q ss_pred ccccc---ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCCC-CcccceeecC-
Q 036257 250 EIAKA---DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPG-QKNDKKVQFG- 324 (418)
Q Consensus 250 ~i~~~---~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~~-~K~~~~v~fp- 324 (418)
.+.+. .++.++++.|+.++.++ |.|+.|+.+..+.++..++++|++||++..||...+.. .|...++.+.
T Consensus 453 ~le~n~E~~di~~~v~a~f~pdtiE-----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~~ 527 (749)
T COG5207 453 FLEGNDEPQDIRKSVEAFFLPDTIE-----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRS 527 (749)
T ss_pred ecccCcchhhHHHHHHheECcccee-----eehhhhcCcccccccchhhccCceeEEecceeeccceeehhccCceEEcc
Confidence 77654 58999999999999887 99999999999999999999999999999999976643 5666666554
Q ss_pred -CCCCCCCCcCCCC------------------------------------------------------------------
Q 036257 325 -STLDMKPFVSGSY------------------------------------------------------------------ 337 (418)
Q Consensus 325 -~~Ldl~~~~~~~~------------------------------------------------------------------ 337 (418)
..++++.||+...
T Consensus 528 D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~ 607 (749)
T COG5207 528 DDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPF 607 (749)
T ss_pred ccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCC
Confidence 4577777765200
Q ss_pred ---------------------------------------------------------------------------CCCce
Q 036257 338 ---------------------------------------------------------------------------EGDLK 342 (418)
Q Consensus 338 ---------------------------------------------------------------------------~~~~~ 342 (418)
.....
T Consensus 608 ~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~P 687 (749)
T COG5207 608 VPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKP 687 (749)
T ss_pred CCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCc
Confidence 00346
Q ss_pred EEEEEEEEeeecCCCCCceEEEEEC---CCCCEEEEeCCceeeecccccCCCCcEEEEEEE
Q 036257 343 YTLYGVLVHHGWSTHSGHYYCFVRT---SSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVR 400 (418)
Q Consensus 343 Y~L~avI~H~G~~~~~GHY~a~vr~---~~~~W~~~dD~~V~~v~~~~v~~~~aYil~Y~r 400 (418)
|.|.|||+|.|.++++|||++|||. ..-+|..+||+++..++.-++++.+.||++|+|
T Consensus 688 YaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R 748 (749)
T COG5207 688 YALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR 748 (749)
T ss_pred ccceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHHhhCCeEEEEec
Confidence 9999999999999999999999997 234799999999999998888999999999998
No 29
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.9e-43 Score=323.37 Aligned_cols=240 Identities=25% Similarity=0.311 Sum_probs=197.7
Q ss_pred cccccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHH
Q 036257 88 FGTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVS 167 (418)
Q Consensus 88 ~~~~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~ 167 (418)
++...+..++||.|.|.|||+||+||+|+++|+||+++ . +....+....|++|+|+.+| ..+
T Consensus 7 f~~~n~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~-~--~~~~~~~~~~~l~~el~~lf-------------s~~-- 68 (268)
T cd02672 7 FEFYNKTNYAGLENHITNSYCNSLLQLLYFIPPFRNFT-A--IILVACPKESCLLCELGYLF-------------STL-- 68 (268)
T ss_pred ccccccccccccccCCccchHHHHHHHHHhcHHHHHHH-H--hhcccCCcCccHHHHHHHHH-------------HHH--
Confidence 45555667899999999999999999999999999983 2 33444566788999999999 111
Q ss_pred HHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCccccccccccc
Q 036257 168 NLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDL 247 (418)
Q Consensus 168 ~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l 247 (418)
.+-|-.+|++.+..+.... + ..|++.+.+.++|+.|
T Consensus 69 ----------------iq~F~~fll~~i~~~~~~~------------------~----------~~C~~~s~~~~~~~~L 104 (268)
T cd02672 69 ----------------IQNFTRFLLETISQDQLGT------------------P----------FSCGTSRNSVSLLYTL 104 (268)
T ss_pred ----------------HHHHHHHHHHHHHHHhccc------------------C----------CCCCceeeccccceee
Confidence 1456788888887542110 0 5799999999999999
Q ss_pred ccccccc-----ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCc----eEEEEEeeeecCCC-----
Q 036257 248 SLEIAKA-----DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPY----VLTIHLKRFRAHDP----- 313 (418)
Q Consensus 248 ~l~i~~~-----~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~----~L~i~l~Rf~~~~~----- 313 (418)
+|++|.. .+|.++|+.++..|.... +.|++|++++.+.++.+|.++|+ +|+||++||.....
T Consensus 105 sLpip~~~~~~~~sl~~cL~~~~~~E~~~~----~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~ 180 (268)
T cd02672 105 SLPLGSTKTSKESTFLQLLKRSLDLEKVTK----AWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVV 180 (268)
T ss_pred eeecCccccccCCCHHHHHHHHhhhhhccc----ccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcc
Confidence 9999953 599999999999885533 88999999999999999999999 99999999985421
Q ss_pred ---CCcccceeecCCCCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEECC-----CCCEEEEeCCceeeecc
Q 036257 314 ---GQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTS-----SGMWYSLDDNRVVQVNE 385 (418)
Q Consensus 314 ---~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~-----~~~W~~~dD~~V~~v~~ 385 (418)
..|....|.||..+++......+.....+|+|+|||+|.|.+..+|||+|+||.. .++||.|||..|+++++
T Consensus 181 ~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~ 260 (268)
T cd02672 181 LPSGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE 260 (268)
T ss_pred eeEEEecCCeecccccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc
Confidence 1466778999988877766666556678999999999999555999999999984 57899999999999988
Q ss_pred cccCCCCcEEEEEE
Q 036257 386 RSVLEQKAYMLFYV 399 (418)
Q Consensus 386 ~~v~~~~aYil~Y~ 399 (418)
.||||||+
T Consensus 261 ------~aYiLfY~ 268 (268)
T cd02672 261 ------LAYILLYQ 268 (268)
T ss_pred ------hheeeecC
Confidence 99999995
No 30
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-42 Score=335.09 Aligned_cols=271 Identities=30% Similarity=0.488 Sum_probs=231.8
Q ss_pred ccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhh
Q 036257 93 RRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCI 172 (418)
Q Consensus 93 ~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~ 172 (418)
..+++||.|...|||+|+.+|+|+-.|.|++-+... ....+...++.+.++.-
T Consensus 84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts---------------------------~~~~~et~dlt~sfgw~ 136 (1203)
T KOG4598|consen 84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTS---------------------------ENDSLETKDLTQSFGWT 136 (1203)
T ss_pred CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCC---------------------------CcccccchhhHhhcCCC
Confidence 345699999999999999999999999999987632 22335555666665433
Q ss_pred hccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCcccccccccccccccc
Q 036257 173 SRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIA 252 (418)
Q Consensus 173 ~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~ 252 (418)
. -...+|||.+|+.+.++++|+.....+ ....+|.+++.|++...+.|..|+..+.+.+.|++|+|++.
T Consensus 137 s--~ea~~qhdiqelcr~mfdalehk~k~t---------~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~ 205 (1203)
T KOG4598|consen 137 S--NEAYDQHDVQELCRLMFDALEHKWKGT---------EHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVK 205 (1203)
T ss_pred c--chhhhhhhHHHHHHHHHHHHHhhhcCc---------hHHHHHHHHhcchHHHHHHHHHcCccccccceeeccccccc
Confidence 2 236899999999999999998764332 23457999999999999999999999999999999999987
Q ss_pred cc------ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCC---CCcccceeec
Q 036257 253 KA------DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDP---GQKNDKKVQF 323 (418)
Q Consensus 253 ~~------~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~---~~K~~~~v~f 323 (418)
.. .+++++|..|..+|.++| +++|.|++|++++.+.|-..|+++|-+|+|||+||.++-. +.|.++++.|
T Consensus 206 pfg~~~ay~sieeal~afvqpe~ldg-~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tf 284 (1203)
T KOG4598|consen 206 PFGAIHAYKSVEEALTAFVQPELLDG-SNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTF 284 (1203)
T ss_pred CCcchhhhhhHHHHHHHhcChhhcCC-ccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccC
Confidence 54 699999999999999986 6679999999999999999999999999999999998743 5799999999
Q ss_pred CCCCCCCCCcCCCC------------------------------------------------------------------
Q 036257 324 GSTLDMKPFVSGSY------------------------------------------------------------------ 337 (418)
Q Consensus 324 p~~Ldl~~~~~~~~------------------------------------------------------------------ 337 (418)
|..|||..|+..+.
T Consensus 285 p~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~ 364 (1203)
T KOG4598|consen 285 PDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKT 364 (1203)
T ss_pred cccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhc
Confidence 99999999875211
Q ss_pred CCCceEEEEEEEEeeecCCCCCceEEEEEC-CCCCEEEEeCCceeeecccccCC-------------CCcEEEEEEEecC
Q 036257 338 EGDLKYTLYGVLVHHGWSTHSGHYYCFVRT-SSGMWYSLDDNRVVQVNERSVLE-------------QKAYMLFYVRDRK 403 (418)
Q Consensus 338 ~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~-~~~~W~~~dD~~V~~v~~~~v~~-------------~~aYil~Y~r~~~ 403 (418)
.++..|+|.||.+|.| ++.+|||+||+++ .+++||+|||.+|+.++.+++.+ .+||||+|+|.+.
T Consensus 365 sg~~~yelf~imihsg-~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id~ 443 (1203)
T KOG4598|consen 365 SGDNVYELFSVMVHSG-NAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRIDP 443 (1203)
T ss_pred CCccHHHhhhhheecC-CCCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcCc
Confidence 2256799999999999 9999999999998 68899999999999999998863 5899999999876
No 31
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-40 Score=347.28 Aligned_cols=310 Identities=30% Similarity=0.530 Sum_probs=266.4
Q ss_pred ccccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccc-----cccchHHHHHHHHHHHHHHhcCCccChH
Q 036257 89 GTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCH-----IAGFCALCAIQKHVSRALQATGRILAPK 163 (418)
Q Consensus 89 ~~~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~-----~~~~~~l~~l~~~~~~~~~~~~~~v~p~ 163 (418)
...-.++.+||.|+||||||||.+|||.+.++++++++...+..... .....+-..+..++..+|......+.|.
T Consensus 239 ~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~ 318 (842)
T KOG1870|consen 239 SSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPT 318 (842)
T ss_pred cCCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCch
Confidence 44457888999999999999999999999999999998754433111 1112233456667777777776689999
Q ss_pred HHHHHHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCC-C-------------------cchhhhhccccccceee
Q 036257 164 DLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVP-S-------------------ESANAYEKSLVHKIFGG 223 (418)
Q Consensus 164 ~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~-~-------------------~~~~~~~~s~i~~~F~g 223 (418)
.+...+....+.|.+..|+|.+||+.+++|.+|+.+...... . ......+.+++.++|.|
T Consensus 319 ~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~ 398 (842)
T KOG1870|consen 319 SFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDG 398 (842)
T ss_pred hhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecc
Confidence 999999999999999999999999999999999998654332 0 01123356899999999
Q ss_pred EEEEEEEeCCCCCccccccccccccccccccc------------------------------------------------
Q 036257 224 RLRSQVKCTQCSYCSNKFDPFLDLSLEIAKAD------------------------------------------------ 255 (418)
Q Consensus 224 ~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~------------------------------------------------ 255 (418)
...+...|..|+..+.++++|..|+|++|...
T Consensus 399 ~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l 478 (842)
T KOG1870|consen 399 TYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWEL 478 (842)
T ss_pred eecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhc
Confidence 99999999999999999999999999998432
Q ss_pred --------------------------------------------------------------------------------
Q 036257 256 -------------------------------------------------------------------------------- 255 (418)
Q Consensus 256 -------------------------------------------------------------------------------- 255 (418)
T Consensus 479 ~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~ 558 (842)
T KOG1870|consen 479 KPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVL 558 (842)
T ss_pred ccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeecc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 036257 256 -------------------------------------------------------------------------------- 255 (418)
Q Consensus 256 -------------------------------------------------------------------------------- 255 (418)
T Consensus 559 ~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (842)
T KOG1870|consen 559 SGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFF 638 (842)
T ss_pred CCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCccccccc
Confidence
Q ss_pred ----------------------------------------------------------cHHHHHhhccccccccCCCccc
Q 036257 256 ----------------------------------------------------------SVLKALNNFTAAELLDGGEKEY 277 (418)
Q Consensus 256 ----------------------------------------------------------~l~~~L~~~~~~e~~~~~~~~~ 277 (418)
+|++|++.|+.+|.+.. ++.+
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~-~~~w 717 (842)
T KOG1870|consen 639 QSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGK-DDRW 717 (842)
T ss_pred ccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCc-cccc
Confidence 99999999999999975 4559
Q ss_pred ccccccccceeeEEEEEeeCCceEEEEEeeeecCCC-CCcccceeecC-CCCCCCCCcCCCCCCCceEEEEEEEEeeecC
Q 036257 278 HCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDP-GQKNDKKVQFG-STLDMKPFVSGSYEGDLKYTLYGVLVHHGWS 355 (418)
Q Consensus 278 ~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~-~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~ 355 (418)
.|++|.+...|.|+..++++|++|+|||+||.+.+. ..|..+.|+|| ..||+++|+..... ..|+|+||.+|+| .
T Consensus 718 ~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~--~~Y~l~av~nHyG-~ 794 (842)
T KOG1870|consen 718 YCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ--VLYDLYAVGNHYG-Q 794 (842)
T ss_pred cChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc--ceeeeeeeecccC-C
Confidence 999999999999999999999999999999998764 48999999999 78999999987644 8999999999999 6
Q ss_pred CCCCceEEEEEC-CCCCEEEEeCCceeeecccccCCCCcEEEEEEEec
Q 036257 356 THSGHYYCFVRT-SSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDR 402 (418)
Q Consensus 356 ~~~GHY~a~vr~-~~~~W~~~dD~~V~~v~~~~v~~~~aYil~Y~r~~ 402 (418)
+.+|||+||.|. .+++||.|||+.|.+++++++....||+|||+|++
T Consensus 795 l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 795 LSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred cCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 999999999998 68999999999999999999999999999999974
No 32
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=2.1e-38 Score=299.48 Aligned_cols=276 Identities=26% Similarity=0.369 Sum_probs=239.1
Q ss_pred CCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHH-HhcCCccChHHHHHHHHhhhcc
Q 036257 97 AGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRAL-QATGRILAPKDLVSNLRCISRN 175 (418)
Q Consensus 97 ~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~v~p~~~~~~l~~~~~~ 175 (418)
+||.|.+++||+||+||+|+++|++|+.++.+. .+....|++|+|+.+|.++. .+.+..+.+..|+++++.....
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~----~c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a 76 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL----ECPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEA 76 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc----CCCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHH
Confidence 599999999999999999999999999999866 26667899999999999998 7888999999999999888765
Q ss_pred CCCCCcCcHHHHHHHHHHHHhhhcCCCCCC----CcchhhhhccccccceeeEEEEEEEeCCCCCccccccccccccccc
Q 036257 176 FRNSRQEDAHEYMVNLLESMHKCCLPSGVP----SESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEI 251 (418)
Q Consensus 176 f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~----~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i 251 (418)
...+.|+|.++|+++|++.|+.++...... .+.......+.|.++|+.......+|..|+..+.+.+....+.|..
T Consensus 77 ~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~y 156 (295)
T PF13423_consen 77 AALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPY 156 (295)
T ss_pred HhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccC
Confidence 667789999999999999999988655432 2223334456799999999999999999999999888888888887
Q ss_pred cc---cccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCC-CCCcccceeecCCCC
Q 036257 252 AK---ADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHD-PGQKNDKKVQFGSTL 327 (418)
Q Consensus 252 ~~---~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~-~~~K~~~~v~fp~~L 327 (418)
|. ..++.+.|+.++..+.... ..|++|++......+..+.++|+||.|.++|..... ...|....+.+|..+
T Consensus 157 p~~~~~~tf~~~Le~sl~~e~~~~----a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i 232 (295)
T PF13423_consen 157 PPSNSNVTFSQVLEHSLNREQQTR----AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSI 232 (295)
T ss_pred CCCCccchHHHHHHHHHhhccccc----ccccccccccceeeeeeccCCCcEEEEEccCCCcccccccccCCceecceee
Confidence 76 4799999999999887765 789999999999999999999999999999998762 247788899999989
Q ss_pred CCCCCcCCC-------CCCCceEEEEEEEEeeecCCCCCceEEEEECC---CCCEEEEeCCce
Q 036257 328 DMKPFVSGS-------YEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTS---SGMWYSLDDNRV 380 (418)
Q Consensus 328 dl~~~~~~~-------~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~---~~~W~~~dD~~V 380 (418)
++..++... ..+..+|+|.|+|+|.|.+..+|||+|+||.+ +.+||.|||..|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 233 NLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred eccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 888887543 44678999999999999889999999999984 469999999765
No 33
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=350.13 Aligned_cols=296 Identities=29% Similarity=0.440 Sum_probs=258.3
Q ss_pred cCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhhh
Q 036257 94 RIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCIS 173 (418)
Q Consensus 94 ~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~~ 173 (418)
..++||.|+||||||||+||+|+.++.||+.+.+.........+...++.+|+++|..+..+..++|++.++...+....
T Consensus 168 g~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~~~~~ 247 (1093)
T KOG1863|consen 168 GFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKSLGWDS 247 (1093)
T ss_pred CCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhhhhccc
Confidence 34599999999999999999999999999999987754444444445788899999988888888999999999997655
Q ss_pred ccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCccccccccccccccccc
Q 036257 174 RNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAK 253 (418)
Q Consensus 174 ~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~ 253 (418)
....+|||++||.+.|++.|++.+.... ....+.++|.|.+.+.+.|..|...+.+.+.|+++.+++.+
T Consensus 248 --~~~~~QqDvqEf~~~l~d~LE~~~~~~~---------~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~~g 316 (1093)
T KOG1863|consen 248 --NDSFEQQDVQEFLTKLLDWLEDSMIDAK---------VENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQLNGKG 316 (1093)
T ss_pred --ccHHhhhhHHHHHHHHHHHHHhhccchh---------hhhhhhhhhcCCcceEEEEEeeeeeccccccccCccccccc
Confidence 4567999999999999999998765443 24569999999999999999999999999999999999999
Q ss_pred cccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCC---CCCcccceeecCCCCCCC
Q 036257 254 ADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHD---PGQKNDKKVQFGSTLDMK 330 (418)
Q Consensus 254 ~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~---~~~K~~~~v~fp~~Ldl~ 330 (418)
..++.++|..|+..|.+.|+++ .|..|...+.+.+...+.++|++|.|+|+||.++. ...|+++.+.||..|+|.
T Consensus 317 ~~nl~~sf~~y~~~E~l~gdn~--~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d 394 (1093)
T KOG1863|consen 317 VKNLEDSLHLYFEAEILLGDNK--YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMD 394 (1093)
T ss_pred hhhHHHHHHHhhhHHHhcCCcc--ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccc
Confidence 9999999999999999998766 69999999999999999999999999999999863 358999999999999999
Q ss_pred CCcCC---C-CCCCceEEEEEEEEeeecCCCCCceEEEEEC-CCCCEEEEeCCceeeecccccCC---------------
Q 036257 331 PFVSG---S-YEGDLKYTLYGVLVHHGWSTHSGHYYCFVRT-SSGMWYSLDDNRVVQVNERSVLE--------------- 390 (418)
Q Consensus 331 ~~~~~---~-~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~-~~~~W~~~dD~~V~~v~~~~v~~--------------- 390 (418)
+|+.. . ....+.|+|.||++|.| ..++|||++|++. ..++|+.|||..|..++..+++.
T Consensus 395 ~~~~~~~~~~~~~~~~y~l~~v~vh~g-~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~ 473 (1093)
T KOG1863|consen 395 RYLSRFKAEESERSAVYSLHAVLVHSG-DAHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTAD 473 (1093)
T ss_pred hhccccchhhhhccceeccchhhcccc-cccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccc
Confidence 99773 1 12235999999999977 9999999999995 47899999999999999777653
Q ss_pred -CCcEEEEEEEecC
Q 036257 391 -QKAYMLFYVRDRK 403 (418)
Q Consensus 391 -~~aYil~Y~r~~~ 403 (418)
..||+|+|.|++.
T Consensus 474 ~~~~~~lv~~~~s~ 487 (1093)
T KOG1863|consen 474 FKNAYMLVYIRDSC 487 (1093)
T ss_pred cCCcceEEEEecCc
Confidence 1289999999865
No 34
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=100.00 E-value=1e-38 Score=290.10 Aligned_cols=307 Identities=20% Similarity=0.314 Sum_probs=235.4
Q ss_pred CCccCCCCCCCCccccccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHH
Q 036257 75 SELWDNGLDPELSFGTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQ 154 (418)
Q Consensus 75 ~~~~~~~~~p~~~~~~~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 154 (418)
...++.++| +.+|.++.+||.|+.++.|+|++||+|.+.+|+|+|++....+..+. ..+...+..+++++|.
T Consensus 118 nr~~~raLd-----~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~d~~---~~lv~rl~~l~rklw~ 189 (442)
T KOG2026|consen 118 NRKLSRALD-----GSTYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYFDNL---TELVQRLGELIRKLWN 189 (442)
T ss_pred chhhhhhhc-----CCcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhcccccccchh---HHHHHHHHHHHHHhcC
Confidence 444566666 78899999999999999999999999999999999999875433222 3367788899999998
Q ss_pred hc--CCccChHHHHHHHHhh-hccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEe
Q 036257 155 AT--GRILAPKDLVSNLRCI-SRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKC 231 (418)
Q Consensus 155 ~~--~~~v~p~~~~~~l~~~-~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C 231 (418)
.. ...++|.++++++... .+.|..++|.|+.|||.|||+.||.++..+. ...|+|+..|+|+++...+-
T Consensus 190 ~r~fk~hvSphe~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k--------~~~SIi~~~fqG~~ri~k~~ 261 (442)
T KOG2026|consen 190 PRNFKGHVSPHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK--------KASSIIHKSFQGEVRIVKEK 261 (442)
T ss_pred hhhhcccCCHHHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCC--------CchhHhhHhhcceEEeeeec
Confidence 65 5789999999998544 4589999999999999999999999887654 24589999999999876654
Q ss_pred CC----CCCccccccccccccccccccccHHHHHhhcccccc-ccCCCccccccccccc---ceeeEEEEEeeCCceEEE
Q 036257 232 TQ----CSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAEL-LDGGEKEYHCQRCKQK---VRALKQLTVYKAPYVLTI 303 (418)
Q Consensus 232 ~~----C~~~s~~~e~f~~l~l~i~~~~~l~~~L~~~~~~e~-~~~~~~~~~C~~C~~~---~~~~~~~~i~~lP~~L~i 303 (418)
.. -........+|+.|+|++|..+-++|..+.-..+++ +...-++|...+-... ..+ +++.+.++|+||++
T Consensus 262 ~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e~~~~~~~-~rf~l~k~P~ylif 340 (442)
T KOG2026|consen 262 QGEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTEVVTPKLA-MRFRLTKLPRYLIF 340 (442)
T ss_pred cccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeeeecchhhh-hheeeecCCceEEE
Confidence 33 122344567999999999988644444443333221 1000011221111111 122 78899999999999
Q ss_pred EEeeeecCCC-CCcccceeecC-CCCCCCCCcC---CCCCCCceEEEEEEEEeeecCCCCCceEEEEEC-CCCCEEEEeC
Q 036257 304 HLKRFRAHDP-GQKNDKKVQFG-STLDMKPFVS---GSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRT-SSGMWYSLDD 377 (418)
Q Consensus 304 ~l~Rf~~~~~-~~K~~~~v~fp-~~Ldl~~~~~---~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~-~~~~W~~~dD 377 (418)
|++||..++. .+|+.+.++|| ..+|+.+... .....-..|.|.|.++|. ...|||...+++ +.++||+++|
T Consensus 341 h~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~e~~~~riqi~~~~s~kW~eiqd 417 (442)
T KOG2026|consen 341 HMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---DEDGNFRIQIYDNSSEKWYEIQD 417 (442)
T ss_pred EeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC---cccCceEEEEEeCCCcceEEecc
Confidence 9999998775 59999999999 5666655443 223334789999999997 567999999976 6889999999
Q ss_pred CceeeecccccCCCCcEEEEEEEe
Q 036257 378 NRVVQVNERSVLEQKAYMLFYVRD 401 (418)
Q Consensus 378 ~~V~~v~~~~v~~~~aYil~Y~r~ 401 (418)
.+|++..++.+...++||++|++.
T Consensus 418 l~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 418 LHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred cchhhhhhHHHHHHHHHHHHHhcc
Confidence 999999999999999999999985
No 35
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-35 Score=266.83 Aligned_cols=196 Identities=27% Similarity=0.393 Sum_probs=154.9
Q ss_pred CccccCC-hhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhhhccC
Q 036257 98 GLENLGN-TCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNF 176 (418)
Q Consensus 98 GL~N~gN-tCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~~~~f 176 (418)
|..|.+| +|||-|+|-+||+
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------- 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------- 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH-----------------------------------------------------------
Confidence 8899999 9999999999976
Q ss_pred CCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCcccccccccccccccc---c
Q 036257 177 RNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIA---K 253 (418)
Q Consensus 177 ~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~---~ 253 (418)
+|+||.||+.+|++.+...+.. +.-++|.|....+-. . +...+.++.|+++.+ +
T Consensus 22 ---~q~D~~e~~~~l~~~~~~~~~~--------------~~~~~~~~g~~~~~~---~---~~~~e~~l~l~ip~~~~~~ 78 (241)
T cd02670 22 ---EQQDPEEFFNFITDKLLMPLLE--------------PKVDIIHGGKKDQDD---D---KLVNERLLQIPVPDDDDGG 78 (241)
T ss_pred ---HhcCHHHHHHHHHHHHhhhhhh--------------HHHHHHhcCcccccc---c---cccccceEEeecccCCCCC
Confidence 7899999999999999864331 133455443221111 0 233456666666653 2
Q ss_pred cccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCC-CCcccceeecCCCCCCCCC
Q 036257 254 ADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDP-GQKNDKKVQFGSTLDMKPF 332 (418)
Q Consensus 254 ~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~-~~K~~~~v~fp~~Ldl~~~ 332 (418)
..+|++||+.|+..|. |.++|++|+|||+||.++.. ..|+.+.|.||..|||.+|
T Consensus 79 ~~tLedcLe~~~~~e~------------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl~~~ 134 (241)
T cd02670 79 GITLEQCLEQYFNNSV------------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDF 134 (241)
T ss_pred cCCHHHHHHHHhchhh------------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCCCcCCchhh
Confidence 4699999999998874 78999999999999998753 4799999999999999999
Q ss_pred cCCCC----------------------CCCceEEEEEEEEeeecCCCCCceEEEEECCC------------CCEEEEeCC
Q 036257 333 VSGSY----------------------EGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSS------------GMWYSLDDN 378 (418)
Q Consensus 333 ~~~~~----------------------~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~------------~~W~~~dD~ 378 (418)
+.... ....+|+|+|||+|.|.+.++|||+||||... +.|+.|||.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~ 214 (241)
T cd02670 135 VADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDM 214 (241)
T ss_pred cccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCc
Confidence 86531 23568999999999997789999999999864 799999999
Q ss_pred ceeeeccc------ccCCCCcEEEEEE
Q 036257 379 RVVQVNER------SVLEQKAYMLFYV 399 (418)
Q Consensus 379 ~V~~v~~~------~v~~~~aYil~Y~ 399 (418)
.|+.+... .+...+||||||+
T Consensus 215 ~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 215 ADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred ccccccccccccchhcccCCceEEEeC
Confidence 98886532 4567999999995
No 36
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-34 Score=285.00 Aligned_cols=307 Identities=29% Similarity=0.439 Sum_probs=242.5
Q ss_pred CCCCccccCChhhHH--HHHHHHhCCHHHHHHHhcCCCCCccc-cccchHHHHHHHHHHHHHHh--cCCccChHHHHHHH
Q 036257 95 IGAGLENLGNTCFLN--SVLQCLTYTEPLAAYLQSGKHQSSCH-IAGFCALCAIQKHVSRALQA--TGRILAPKDLVSNL 169 (418)
Q Consensus 95 ~~~GL~N~gNtCYlN--SvLQ~L~~~~~fr~~ll~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~--~~~~v~p~~~~~~l 169 (418)
..-|..|.+++|+.| ++.|.+..+.+++.-.+......... ......+..+...+...... ....+.|..++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~~ 310 (587)
T KOG1864|consen 231 RVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISDL 310 (587)
T ss_pred cccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhhh
Confidence 447999999999999 99999999999985443322111100 00111111222222111111 12357899999999
Q ss_pred HhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCC-------C----CCcchh------------hhhccccccceeeEEE
Q 036257 170 RCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSG-------V----PSESAN------------AYEKSLVHKIFGGRLR 226 (418)
Q Consensus 170 ~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~-------~----~~~~~~------------~~~~s~i~~~F~g~~~ 226 (418)
++....|..+.||||+||+.++++.+.+-+.... . ...... .....+++.+|.|++.
T Consensus 311 ~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l~ 390 (587)
T KOG1864|consen 311 IKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGILT 390 (587)
T ss_pred hhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCeee
Confidence 9999999999999999999999999887553211 0 000001 2245789999999999
Q ss_pred EEEEeCCCCCcccccccccccccccc--ccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEE
Q 036257 227 SQVKCTQCSYCSNKFDPFLDLSLEIA--KADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIH 304 (418)
Q Consensus 227 ~~~~C~~C~~~s~~~e~f~~l~l~i~--~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~ 304 (418)
.+++|..|...+...+.|.+++++++ ...++..+|..|...|.+.|.++ |.|++|...+.|.+++.++++|.+|+||
T Consensus 391 ~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nk-y~c~~c~s~qeae~~l~~k~lp~~L~l~ 469 (587)
T KOG1864|consen 391 NETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENK-YSCENCCSLQEAERRLKIKKLPYVLTLH 469 (587)
T ss_pred eeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCc-ccccccCchhhHHHhccccCCcceeeee
Confidence 99999999999999999999999999 68999999999999999987554 9999999999999999999999999999
Q ss_pred EeeeecCC---CCCcccceeecCCCCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCcee
Q 036257 305 LKRFRAHD---PGQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVV 381 (418)
Q Consensus 305 l~Rf~~~~---~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~ 381 (418)
|+||.+.. ...|....|.+|..|.+............+|.|+|||+|.|.+.+.|||+||+|.....|+.|||..|+
T Consensus 470 Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~fdD~~V~ 549 (587)
T KOG1864|consen 470 LKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLFDDDNVE 549 (587)
T ss_pred hhccccccccccccccccccccccceeeccccccccCccceeeEEEEEEeccCCCCCcceEEEEeeCCCCceeccccccc
Confidence 99999874 237888999999999998777766555579999999999999999999999999955559999999999
Q ss_pred eecccccCC---CCcEEEEEEEec
Q 036257 382 QVNERSVLE---QKAYMLFYVRDR 402 (418)
Q Consensus 382 ~v~~~~v~~---~~aYil~Y~r~~ 402 (418)
.++.+.+.. ..+|+++|.+..
T Consensus 550 ~~s~~~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 550 PISEEPVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred ccCcchhhhccCCCccceeeeEEe
Confidence 999988875 677888887653
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-32 Score=257.08 Aligned_cols=299 Identities=22% Similarity=0.258 Sum_probs=225.1
Q ss_pred ccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCcccc---ccchHHHHHHHHHHHHHHhcCCccChHHHHH
Q 036257 91 TFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHI---AGFCALCAIQKHVSRALQATGRILAPKDLVS 167 (418)
Q Consensus 91 ~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~---~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~ 167 (418)
...+.++|+.|+|||||||+.+|||-..|+++.-+........... ...-+..++...|..+..+ ..+.|..+++
T Consensus 100 ~~~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llq 177 (473)
T KOG1872|consen 100 AALPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK--GAVAPINLLQ 177 (473)
T ss_pred hhccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc--CCcchHHHHH
Confidence 3466789999999999999999999999999887755432221111 1122344555666655555 7899999999
Q ss_pred HHHhhhccCCC------CCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCcccc-
Q 036257 168 NLRCISRNFRN------SRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNK- 240 (418)
Q Consensus 168 ~l~~~~~~f~~------~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~- 240 (418)
.+..-.|+|.. ..||||.|++..++-.++..+....... .....+.+.|++++..+..|..-......
T Consensus 178 tl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~-----~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~ 252 (473)
T KOG1872|consen 178 TLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP-----CLEAEAAAGFGAEFSTTMSCSEGEDEGGGA 252 (473)
T ss_pred HHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc-----chhHHHHHhhccccccceeeccCccccccc
Confidence 99988887765 8999999999999999998654332221 33456888999999999999776554333
Q ss_pred -cccccccccccccc-ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCC---CC
Q 036257 241 -FDPFLDLSLEIAKA-DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDP---GQ 315 (418)
Q Consensus 241 -~e~f~~l~l~i~~~-~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~---~~ 315 (418)
.|.|+.|...+... ..+...|+.-+.+++.. .-+.-|......+.+.|.+||.||++++.||.+... ..
T Consensus 253 ~~E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~K------~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~a 326 (473)
T KOG1872|consen 253 GRELVDQLKCIINKTVHDMRFGLKSGLSEEIQK------ISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVA 326 (473)
T ss_pred ccccccccceEEeeeechhhhhhhhhhhhhhhc------cCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHH
Confidence 78888888887654 44555555444333221 122223334456778899999999999999998743 46
Q ss_pred cccceeecCCCCCCCCCcCCCC--------------------------------------------------CCCceEEE
Q 036257 316 KNDKKVQFGSTLDMKPFVSGSY--------------------------------------------------EGDLKYTL 345 (418)
Q Consensus 316 K~~~~v~fp~~Ldl~~~~~~~~--------------------------------------------------~~~~~Y~L 345 (418)
|+-..|.||..||..+++.++. ....-|+|
T Consensus 327 kil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l 406 (473)
T KOG1872|consen 327 KILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDL 406 (473)
T ss_pred HHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeee
Confidence 7888999999999988876321 01346999
Q ss_pred EEEEEeeecCCCCCceEEEEECCCCCEEEEeCCceeeecccccCC-------CCcEEEEEEEec
Q 036257 346 YGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLE-------QKAYMLFYVRDR 402 (418)
Q Consensus 346 ~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~v~~~~v~~-------~~aYil~Y~r~~ 402 (418)
+|||.|.|.+..+|||++|+|.+.+.|+.|||..|+.+..+.+.+ ..||||+|.-+.
T Consensus 407 ~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~~ 470 (473)
T KOG1872|consen 407 QLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKARV 470 (473)
T ss_pred eEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeecccc
Confidence 999999999999999999999989999999999999999999885 689999997543
No 38
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.7e-31 Score=241.29 Aligned_cols=302 Identities=30% Similarity=0.440 Sum_probs=217.6
Q ss_pred cCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccc-hHHHHHHHHHHHHH---H---------------
Q 036257 94 RIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGF-CALCAIQKHVSRAL---Q--------------- 154 (418)
Q Consensus 94 ~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~-~~l~~l~~~~~~~~---~--------------- 154 (418)
..|+|+.|-||-|||||+||+|..|+||.+.+.............. ..+.++..+....- .
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~ 105 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHV 105 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccc
Confidence 5679999999999999999999999999998865432111111111 12222221111111 0
Q ss_pred ----------hcCCccChHHHHHHHHhhhc--cCCCCCcCcHHHHHHHHHHHHhhhcCCCCC----------C----C--
Q 036257 155 ----------ATGRILAPKDLVSNLRCISR--NFRNSRQEDAHEYMVNLLESMHKCCLPSGV----------P----S-- 206 (418)
Q Consensus 155 ----------~~~~~v~p~~~~~~l~~~~~--~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~----------~----~-- 206 (418)
..+..+.|..+...+....+ ....|.|+||.||+..+||.||+++..... + .
T Consensus 106 ~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~ 185 (420)
T KOG1871|consen 106 VEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNG 185 (420)
T ss_pred cchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccccccc
Confidence 00112334444444432221 344699999999999999999998732100 0 0
Q ss_pred -----cch-------------------------hhhhccccccceeeEEEEEEEeCCCCCcccccccccccccccc--cc
Q 036257 207 -----ESA-------------------------NAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIA--KA 254 (418)
Q Consensus 207 -----~~~-------------------------~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~--~~ 254 (418)
.+. ..-..++++++|+|++++...-.. .+.+.+-+||..+.|+|. ..
T Consensus 186 n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i 264 (420)
T KOG1871|consen 186 NLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKI 264 (420)
T ss_pred ccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeecccc
Confidence 000 011236789999999999887544 455688999999999994 55
Q ss_pred ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCC--CCCcccceeecCCCCCCCCC
Q 036257 255 DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHD--PGQKNDKKVQFGSTLDMKPF 332 (418)
Q Consensus 255 ~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~--~~~K~~~~v~fp~~Ldl~~~ 332 (418)
.+++++++.+...|.+.+ |.-. -+..+.+.+++.+.++|++|++|++||.+.. ..+|+.+++++|-.+.+..-
T Consensus 265 ~sv~~ales~~~re~lp~----~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~ 339 (420)
T KOG1871|consen 265 HSVQDALESLVARESLPG----YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKN 339 (420)
T ss_pred CCHHHHhhccChhhcccc----eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeechh
Confidence 899999999999999886 5554 6777889999999999999999999999863 34899999999977776543
Q ss_pred cCC-C-----CCCCceEEEEEEEEeeecCCCCCceEEEEEC-CCCCEEEEeCCceeeecccccCC----CCcEEEEEEEe
Q 036257 333 VSG-S-----YEGDLKYTLYGVLVHHGWSTHSGHYYCFVRT-SSGMWYSLDDNRVVQVNERSVLE----QKAYMLFYVRD 401 (418)
Q Consensus 333 ~~~-~-----~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~-~~~~W~~~dD~~V~~v~~~~v~~----~~aYil~Y~r~ 401 (418)
+-. . ....-.|+|.+++.|.|.++..|||++-+.+ ..+.|+.+||..|..+..++|.+ .+||+|.|.|.
T Consensus 340 ~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~ 419 (420)
T KOG1871|consen 340 CFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEA 419 (420)
T ss_pred hhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeeec
Confidence 221 0 1224479999999999999999999998855 45669999999999999999985 68999999875
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.90 E-value=4.7e-23 Score=205.40 Aligned_cols=315 Identities=16% Similarity=0.215 Sum_probs=220.8
Q ss_pred ccCCCCccCCCCCCCCccccccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHH
Q 036257 71 KVDGSELWDNGLDPELSFGTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVS 150 (418)
Q Consensus 71 ~~~~~~~~~~~~~p~~~~~~~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~ 150 (418)
+++.+++..+++|- +.....-+.||.-.+-+-|.||+||+|+.+|++|..++++ .+....|++|+|+.+|.
T Consensus 478 ~lkysk~G~edFDF----~~~NqT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H-----~C~~e~CL~CELGFLF~ 548 (1118)
T KOG1275|consen 478 PLKYSKFGTEDFDF----QDYNQTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRH-----ICTKEFCLLCELGFLFT 548 (1118)
T ss_pred ceeecccccccCCC----cccccceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcC-----ccchhHHHHHHHHHHHH
Confidence 45667777778873 4444555699999999999999999999999999999986 35567899999999999
Q ss_pred HHHHhcCCccChHHHHHHHHhhhccCCCC---C-------------cCcHHHHHHHHHHHHhh--hcCC----CCCCCcc
Q 036257 151 RALQATGRILAPKDLVSNLRCISRNFRNS---R-------------QEDAHEYMVNLLESMHK--CCLP----SGVPSES 208 (418)
Q Consensus 151 ~~~~~~~~~v~p~~~~~~l~~~~~~f~~~---~-------------QqDa~Efl~~ll~~L~~--~~~~----~~~~~~~ 208 (418)
++-.+.+..+....|+++++.+...-..| . -||+..|..-......+ ++.. .....+.
T Consensus 549 Ml~~S~G~~Cqa~NFlraf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~ 628 (1118)
T KOG1275|consen 549 MLDSSTGDPCQANNFLRAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGES 628 (1118)
T ss_pred HHhhhcCCccchhHHHHHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCce
Confidence 99999999999999999997665421111 0 11222222111111100 0000 0000111
Q ss_pred hhhhhccccccceeeEEEEEEEeCCCCCcccccccccccccccccc---------ccHHHHHhhccccccccCCCccccc
Q 036257 209 ANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKA---------DSVLKALNNFTAAELLDGGEKEYHC 279 (418)
Q Consensus 209 ~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~---------~~l~~~L~~~~~~e~~~~~~~~~~C 279 (418)
..-....++.++|+-+......|..|+.++.+......+.+..|.. .++.+.|++...-. .+.+-.|
T Consensus 629 ~~vn~~~~l~q~F~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~----kn~~~~C 704 (1118)
T KOG1275|consen 629 FKVNYAPVLQQSFCQEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLF----KNKQAWC 704 (1118)
T ss_pred eeecchhHHHHHhhhHHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhcc----ccccccc
Confidence 1111234788999999999999999999888776666666666643 23444444332211 2334689
Q ss_pred ccccccceeeEEEEEeeCCceEEEEEeeeecCC-----CCCcccceeecCCCCCCCCCcC------------------CC
Q 036257 280 QRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHD-----PGQKNDKKVQFGSTLDMKPFVS------------------GS 336 (418)
Q Consensus 280 ~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~-----~~~K~~~~v~fp~~Ldl~~~~~------------------~~ 336 (418)
+.|++..+...+..+..+|.+|.|...-+.... ...|....|-+|+.+.|...-. ..
T Consensus 705 ~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d 784 (1118)
T KOG1275|consen 705 ETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYD 784 (1118)
T ss_pred ccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCcccc
Confidence 999999999999999999999999887665321 1234455666776655533211 12
Q ss_pred CCCCceEEEEEEEEeeecCCCCCceEEEEEC---------CCCCEEEEeCCceeeecccccCC-----CCcEEEEE
Q 036257 337 YEGDLKYTLYGVLVHHGWSTHSGHYYCFVRT---------SSGMWYSLDDNRVVQVNERSVLE-----QKAYMLFY 398 (418)
Q Consensus 337 ~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~---------~~~~W~~~dD~~V~~v~~~~v~~-----~~aYil~Y 398 (418)
.++-..|+|.|+|+|.|.+-+.+|.+++|+. .+.+||.|||..|.+++++|+.. ..|.||+|
T Consensus 785 ~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 785 EPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred CCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 2344799999999999977799999999974 14699999999999999999985 78999999
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=99.18 E-value=3.5e-10 Score=99.47 Aligned_cols=148 Identities=16% Similarity=0.312 Sum_probs=95.3
Q ss_pred ccccccceeeEEEEEEEeCCCCCccccc-----cccccccccccccccHHHHHhhccccccccCCCccccccccccccee
Q 036257 214 KSLVHKIFGGRLRSQVKCTQCSYCSNKF-----DPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRA 288 (418)
Q Consensus 214 ~s~i~~~F~g~~~~~~~C~~C~~~s~~~-----e~f~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~ 288 (418)
...+.++|.-.+.-...|..||+..... ..|..+ +..+-.-....- -.|.+|+.+ ..
T Consensus 120 d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv-------------~pdwhPLnA~h~----~pCn~C~~k-sQ 181 (275)
T PF15499_consen 120 DPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNV-------------IPDWHPLNAVHF----GPCNSCNSK-SQ 181 (275)
T ss_pred chHHHhHhheeeEEEEEccccCChhhhhheeeecccCCC-------------CCCCCccccccc----CCCcccCCh-HH
Confidence 3557899999999999999999864422 222222 112221111111 469999886 55
Q ss_pred eEEEEEeeCCceEEEEEeeeecCCCCCcccceeecCCCCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEECC
Q 036257 289 LKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTS 368 (418)
Q Consensus 289 ~~~~~i~~lP~~L~i~l~Rf~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~ 368 (418)
.+++.+.++|+++++|+. .|-..+......|- -....|++.+||-+.- +--|+++|++++
T Consensus 182 ~rkMvlekv~~vfmLHFV----eGLP~ndl~~ysF~-------------feg~~Y~Vt~VIQY~~---~~~HFvtWi~~~ 241 (275)
T PF15499_consen 182 RRKMVLEKVPPVFMLHFV----EGLPHNDLQHYSFH-------------FEGCLYQVTSVIQYQA---NLNHFVTWIRDS 241 (275)
T ss_pred hHhhhhhcCchhhhhhhh----ccCCccCCCcccee-------------ecCeeEEEEEEEEEec---cCceeEEEEEcC
Confidence 677889999999999964 22222222222221 1345799999998765 357999999999
Q ss_pred CCCEEEEeCCceeeec---ccccCCCCcEEEEEE
Q 036257 369 SGMWYSLDDNRVVQVN---ERSVLEQKAYMLFYV 399 (418)
Q Consensus 369 ~~~W~~~dD~~V~~v~---~~~v~~~~aYil~Y~ 399 (418)
+|.|.++||.+=-... .-+|-..+--|++||
T Consensus 242 dGsWLecDDLkgp~~~~h~~~~vPasEiHIV~WE 275 (275)
T PF15499_consen 242 DGSWLECDDLKGPCCWRHKRFEVPASEIHIVIWE 275 (275)
T ss_pred CCCeEeeccCCCcchhccCCCCCChhHcEEEEeC
Confidence 9999999998754321 223333555566654
No 41
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=97.31 E-value=0.012 Score=55.54 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=41.4
Q ss_pred CCCccccCChhhHHHHHHHHhCCHH-HHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhhhc
Q 036257 96 GAGLENLGNTCFLNSVLQCLTYTEP-LAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISR 174 (418)
Q Consensus 96 ~~GL~N~gNtCYlNSvLQ~L~~~~~-fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~~~ 174 (418)
.+=|.=.-|+||+||++-+|=++.. |+.. .+.++...|. . =+|..|+..+-.+.
T Consensus 102 ~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~----------------~l~~aw~~f~-----~---G~~~~fVa~~Ya~~- 156 (320)
T PF08715_consen 102 FRVLKQSDNNCWVNAACLQLQALKIKFKSP----------------GLDEAWNEFK-----A---GDPAPFVAWCYAST- 156 (320)
T ss_dssp EEEE---TTTHHHHHHHHHHTTST--BSSH----------------HHHHHHHHHH-----T---T--HHHHHHHHHHT-
T ss_pred EEEEEecCCCcHHHHHHHHHHhcCCccCCH----------------HHHHHHHHHh-----C---CChHHHHHHHHHHc-
Confidence 3445555699999999988844432 2211 1222222222 2 25777877775544
Q ss_pred cCCCCCcCcHHHHHHHHHHHHhh
Q 036257 175 NFRNSRQEDAHEYMVNLLESMHK 197 (418)
Q Consensus 175 ~f~~~~QqDa~Efl~~ll~~L~~ 197 (418)
....|+..||+++|..|++.+..
T Consensus 157 ~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 157 NAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp T--TTS---HHHHHHHHHTTB-T
T ss_pred CCCCCCCcCHHHHHHHHHHhccc
Confidence 45688999999999999988764
No 42
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00082 Score=68.61 Aligned_cols=102 Identities=22% Similarity=0.289 Sum_probs=57.9
Q ss_pred ccccCChhhHHHHHHHHhCCHHHHHHHhcCC-----CCCc---cccccchHHHHHHHHHHHHHH--hc-----CCccChH
Q 036257 99 LENLGNTCFLNSVLQCLTYTEPLAAYLQSGK-----HQSS---CHIAGFCALCAIQKHVSRALQ--AT-----GRILAPK 163 (418)
Q Consensus 99 L~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~-----~~~~---~~~~~~~~l~~l~~~~~~~~~--~~-----~~~v~p~ 163 (418)
|.|.||+||.||+||+|..+|+|+--+.... .... .........+....+-..... .. ....+-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 9999999999999999999999987554210 0000 000111111111111111111 11 1122334
Q ss_pred HHHHHHHhhh---ccCCCCCcCcHHHHHHHHHHHHhhhcC
Q 036257 164 DLVSNLRCIS---RNFRNSRQEDAHEYMVNLLESMHKCCL 200 (418)
Q Consensus 164 ~~~~~l~~~~---~~f~~~~QqDa~Efl~~ll~~L~~~~~ 200 (418)
.+.+.+.... ..|....|+|+++++..++..+...+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~ 153 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMG 153 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhcc
Confidence 4444443333 357889999999999998888776553
No 43
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00017 Score=73.91 Aligned_cols=207 Identities=19% Similarity=0.318 Sum_probs=123.0
Q ss_pred CcCcHHHHHHHHHHHHhhhcCCCCCCCcc-----------hhhhhccccccceeeEEEEEEEeCCCCCccccccc---cc
Q 036257 180 RQEDAHEYMVNLLESMHKCCLPSGVPSES-----------ANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDP---FL 245 (418)
Q Consensus 180 ~QqDa~Efl~~ll~~L~~~~~~~~~~~~~-----------~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~---f~ 245 (418)
...++.++|..++..+++....+...... ......++++++|+.....+..|..|+...+..+. +.
T Consensus 548 ~~~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~~ 627 (806)
T KOG1887|consen 548 HEGVYSELLSDLLLSLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYGI 627 (806)
T ss_pred hhhhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhhhh
Confidence 34567778888888887665433111100 01223467889999999999999999876554321 11
Q ss_pred ccccccc-------ccccHHHHHhhccccccccCCCcccccc----cccccceeeEEEEEeeCCceEEEEEeeeecCCCC
Q 036257 246 DLSLEIA-------KADSVLKALNNFTAAELLDGGEKEYHCQ----RCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPG 314 (418)
Q Consensus 246 ~l~l~i~-------~~~~l~~~L~~~~~~e~~~~~~~~~~C~----~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~~ 314 (418)
.+..+.- +..++++.|+. ...+. ...|+ .||+.. .....|.+.|+|++|.+.. .. ...
T Consensus 628 ~~~a~slr~~k~a~~n~~f~~ilk~-i~m~~------~m~cD~~~gGCgk~n--~v~h~is~~P~vftIvlew-Ek-~ET 696 (806)
T KOG1887|consen 628 VIAADSLRQLKCAFQNITFEDILKN-IRMND------KMLCDKETGGCGKAN--LVHHILSPCPPVFTIVLEW-EK-SET 696 (806)
T ss_pred hccchhhhhHHHHhhhhhHHHHHHH-hhhhh------hhcccccCCCCcchh--hhhhhcCCCCCeeEeeeeh-hc-ccc
Confidence 1222110 11244444443 21111 23455 366542 3344578899999996643 21 222
Q ss_pred Cc--ccceeecCCCCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEECCCCCEE--EEeCCceeeec-ccccC
Q 036257 315 QK--NDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWY--SLDDNRVVQVN-ERSVL 389 (418)
Q Consensus 315 ~K--~~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~--~~dD~~V~~v~-~~~v~ 389 (418)
++ ..+...+..++|++.....+.....+|+|+++|.-.+. .++|.|+.+. .++|. ..+|..+..+. |.+|.
T Consensus 697 e~eI~~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~---~~~~~C~Aye-~Nrwvs~r~~~~~~e~iG~w~dvv 772 (806)
T KOG1887|consen 697 EKEISETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEE---GEEYICFAYE-PNRWVSLRHEDSQGEVVGDWKDVV 772 (806)
T ss_pred hHHHHHHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccc---cceEEEeecc-CCcchhhHHHHHHhhhccchHHHH
Confidence 22 22233456778887665444456679999999987641 5899999988 77788 88998887763 44443
Q ss_pred C------CCcEEEEEEEe
Q 036257 390 E------QKAYMLFYVRD 401 (418)
Q Consensus 390 ~------~~aYil~Y~r~ 401 (418)
+ ..+-+|||+..
T Consensus 773 r~c~e~~vrpeil~ye~~ 790 (806)
T KOG1887|consen 773 RFCGERKVRPEILFYEAQ 790 (806)
T ss_pred HHHhcccccHHHHHHHHH
Confidence 2 34667777653
No 44
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=96.92 E-value=0.00076 Score=65.44 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=24.6
Q ss_pred CCCccccCChhhHHHHHHHHhCCHHHHHHHh
Q 036257 96 GAGLENLGNTCFLNSVLQCLTYTEPLAAYLQ 126 (418)
Q Consensus 96 ~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll 126 (418)
..|++-.-|.||+||.|-+++.-....+-.+
T Consensus 368 ~kgiqgh~nscyldstlf~~f~f~sv~dS~l 398 (724)
T KOG3556|consen 368 IKGIQGHPNSCYLDSTLFKPFEFDSVTDSTL 398 (724)
T ss_pred cccccCCcchhhccccccccccccccccccc
Confidence 4688888899999999999987666555544
No 45
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=94.89 E-value=0.015 Score=49.20 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=34.3
Q ss_pred CCceEEEEECCCCCEEEEeCCceeeecccccCCCCcEEEEEEEecCCCCCCCChhhhh
Q 036257 358 SGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDRKNIVPRKPTDVFR 415 (418)
Q Consensus 358 ~GHY~a~vr~~~~~W~~~dD~~V~~v~~~~v~~~~aYil~Y~r~~~~~~~~~p~~~~~ 415 (418)
.||.+.+.+. .+.||.+||..+...++... -+|+|..-+.+..+-.+...+.
T Consensus 138 ~~Havfa~~t-s~gWy~iDDe~~y~~tPdp~-----~VLvfvp~D~Epl~~~~~~~~~ 189 (193)
T PF05408_consen 138 QEHAVFACVT-SDGWYAIDDEDFYPWTPDPS-----DVLVFVPYDQEPLPVDWRAKVQ 189 (193)
T ss_dssp TTEEEEEEEE-TTCEEEEETTEEEE----GG-----GEEEEEESSSS-TT-CCHHTTT
T ss_pred CcceEEEEEe-eCcEEEecCCeeeeCCCChh-----heEEEcccCcccCCccHHHHHH
Confidence 5999999888 55599999999998765432 3577888777766655554443
No 46
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=87.29 E-value=2 Score=36.72 Aligned_cols=21 Identities=43% Similarity=0.847 Sum_probs=15.1
Q ss_pred CCccccCChhhHHHHHHHHhC
Q 036257 97 AGLENLGNTCFLNSVLQCLTY 117 (418)
Q Consensus 97 ~GL~N~gNtCYlNSvLQ~L~~ 117 (418)
.|+.|.+||||+||++|++..
T Consensus 34 t~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 34 TGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp E----SSSTHHHHHHHHHHHH
T ss_pred ecCCCCCCChHHHHHHHHHHH
Confidence 499999999999999999843
No 47
>PF14353 CpXC: CpXC protein
Probab=75.29 E-value=2.2 Score=34.69 Aligned_cols=48 Identities=19% Similarity=0.424 Sum_probs=26.1
Q ss_pred EEeCCCCCccccccccccccccccccccHHHHHhhccccccccCCCcccccccccccce
Q 036257 229 VKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVR 287 (418)
Q Consensus 229 ~~C~~C~~~s~~~e~f~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~ 287 (418)
++|+.|++..... .+. +++....+.+.+.|- +|.-..+.|+.||....
T Consensus 2 itCP~C~~~~~~~-v~~--~I~~~~~p~l~e~il--------~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFE-VWT--SINADEDPELKEKIL--------DGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEE-EEe--EEcCcCCHHHHHHHH--------cCCcCEEECCCCCCcee
Confidence 6899999865322 222 233333344444332 22223389999998643
No 48
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=61.88 E-value=7.5 Score=27.00 Aligned_cols=34 Identities=12% Similarity=0.404 Sum_probs=25.7
Q ss_pred ccccccccccceeeEEEEEe--eCCceEEEEEeeee
Q 036257 276 EYHCQRCKQKVRALKQLTVY--KAPYVLTIHLKRFR 309 (418)
Q Consensus 276 ~~~C~~C~~~~~~~~~~~i~--~lP~~L~i~l~Rf~ 309 (418)
.+.|++|+...-..++.... .+..++=||.++|-
T Consensus 4 ~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 4 AFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred cccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 46799999976666665543 67788888888876
No 49
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=61.87 E-value=17 Score=27.66 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=40.8
Q ss_pred eEEEEEEEeCCCCCccccccccccccccccccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeC
Q 036257 223 GRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKA 297 (418)
Q Consensus 223 g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~l 297 (418)
|...++..|..|............ -..+..+.+++.|..--..+..+. ..-.|++|+.....-.++++.++
T Consensus 16 g~~~~rf~C~tCpY~~~I~~ei~~--r~~~~~Kevd~vlgg~~a~~nv~~--t~~~Cp~Cgh~rayF~qlQtRSA 86 (105)
T KOG2906|consen 16 GESCNRFSCRTCPYVFPISREISS--RKYPKLKEVDDVLGGDEAWENVDQ--TEATCPTCGHERAYFMQLQTRSA 86 (105)
T ss_pred CCeEeeEEcCCCCceeeEeeeeec--cccCchhhhhhhcCCcccccchhh--ccCcCCCCCCCceEEEEeeeccC
Confidence 445788899999886433221111 111334667777765333333322 12579999998776666666555
No 50
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=51.72 E-value=15 Score=18.74 Aligned_cols=14 Identities=36% Similarity=1.030 Sum_probs=10.8
Q ss_pred EEECCCCCEEEEeCC
Q 036257 364 FVRTSSGMWYSLDDN 378 (418)
Q Consensus 364 ~vr~~~~~W~~~dD~ 378 (418)
+++. ++.||.|++.
T Consensus 3 W~~~-~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQD-NGNWYYFDSD 16 (19)
T ss_dssp EEEE-TTEEEEETTT
T ss_pred CEEE-CCEEEEeCCC
Confidence 5666 6889999875
No 51
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=51.19 E-value=24 Score=36.09 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=44.1
Q ss_pred ceEEEEEeeeecC---------CCC-CcccceeecCCCCCCCCCcCCCCCCCceEEEEEEEEee-ecCC----------C
Q 036257 299 YVLTIHLKRFRAH---------DPG-QKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHH-GWST----------H 357 (418)
Q Consensus 299 ~~L~i~l~Rf~~~---------~~~-~K~~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~avI~H~-G~~~----------~ 357 (418)
-+|++.+.|-... +.+ .-+...+++..++-+ +...|+|.+.|||. |... -
T Consensus 479 GvLIfyVeRRq~k~~~~Gec~tg~rs~ind~pidv~q~i~i---------ngimyrL~SAVCYK~~d~~~d~C~~~difl 549 (666)
T PF03292_consen 479 GVLIFYVERRQNKNTFSGECYTGFRSRINDSPIDVSQEITI---------NGIMYRLKSAVCYKIGDQFFDGCNGNDIFL 549 (666)
T ss_pred ceEEEEEeehhccceeccccccchhhhhcCcccccccceee---------cceeeeeehhheeeccccccCCCCCCccee
Confidence 6899999886421 111 234456666666666 45689999999994 2211 1
Q ss_pred CCceEEEEECCCCCEEEEeCCce
Q 036257 358 SGHYYCFVRTSSGMWYSLDDNRV 380 (418)
Q Consensus 358 ~GHY~a~vr~~~~~W~~~dD~~V 380 (418)
.|||+ .++...| ||.+|=..+
T Consensus 550 kG~yt-IlfTe~G-pw~YDP~s~ 570 (666)
T PF03292_consen 550 KGYYT-ILFTEMG-PWMYDPLSI 570 (666)
T ss_pred ceeEE-EEEecCC-ceeeCchhh
Confidence 26665 4566466 778884444
No 52
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=48.63 E-value=20 Score=30.33 Aligned_cols=32 Identities=22% Similarity=0.627 Sum_probs=24.8
Q ss_pred EEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCceee
Q 036257 345 LYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQ 382 (418)
Q Consensus 345 L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~ 382 (418)
..|+|++.+ .|++|..|- +|.||.+|-..-.+
T Consensus 99 ~~gfI~N~~-----~HWf~iRki-~~~wyNLDS~l~~P 130 (157)
T PF02099_consen 99 EFGFICNLS-----RHWFAIRKI-GGQWYNLDSKLKEP 130 (157)
T ss_dssp SSEEEEECT-----TEEEEEEEE-TTEEEEECTTTSS-
T ss_pred ceEEEeccC-----cceEEEEee-CCeeEeccCCCCCC
Confidence 358888855 799998888 89999999665443
No 53
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=43.34 E-value=9.9 Score=21.20 Aligned_cols=13 Identities=46% Similarity=1.096 Sum_probs=10.5
Q ss_pred CCccccccccccc
Q 036257 273 GEKEYHCQRCKQK 285 (418)
Q Consensus 273 ~~~~~~C~~C~~~ 285 (418)
++++|.|+.|++.
T Consensus 11 ~~k~~~C~~C~k~ 23 (26)
T PF13465_consen 11 GEKPYKCPYCGKS 23 (26)
T ss_dssp SSSSEEESSSSEE
T ss_pred CCCCCCCCCCcCe
Confidence 5678999999864
No 54
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=40.08 E-value=19 Score=30.64 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=31.4
Q ss_pred EEeCCCCCccccccccccccccccccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCc--eEEEEEe
Q 036257 229 VKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPY--VLTIHLK 306 (418)
Q Consensus 229 ~~C~~C~~~s~~~e~f~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~--~L~i~l~ 306 (418)
..|+.|+....+. .+..+|| ||..-++.. +.|+.||-+..-.+.. =..-|. .+++++.
T Consensus 2 s~Cp~C~~~~~~~----~~~~~IP-----------~F~evii~s----f~C~~CGyk~~ev~~~-~~~~~~G~r~tl~V~ 61 (161)
T PF03367_consen 2 SLCPNCGENGTTR----ILLTDIP-----------YFKEVIIMS----FECEHCGYKNNEVKSG-GQIQPKGVRITLKVE 61 (161)
T ss_dssp EE-TTTSSCCEEE----EEEEEET-----------TTEEEEEEE----EE-TTT--EEEEEEEE-CSS-SSEEEEEEEE-
T ss_pred CcCCCCCCCcEEE----EEEEcCC-----------CCceEEEEE----eECCCCCCEeeeEEEC-ccCCCCceEEEEEEC
Confidence 5799999865433 2455566 466666765 8999999875443321 122355 5666653
No 55
>PF10748 DUF2531: Protein of unknown function (DUF2531); InterPro: IPR019684 This entry represents proteins with unknown function and appears to be restricted to Enterobacteriaceae.
Probab=39.52 E-value=36 Score=27.77 Aligned_cols=57 Identities=14% Similarity=0.365 Sum_probs=39.2
Q ss_pred ceEEEEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCc-------eeeecccccC-----CCCcEEEEEEEecC
Q 036257 341 LKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNR-------VVQVNERSVL-----EQKAYMLFYVRDRK 403 (418)
Q Consensus 341 ~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~-------V~~v~~~~v~-----~~~aYil~Y~r~~~ 403 (418)
..++|.|||-. +++|++++.+++++|...-... |+.++...+. ..+|--.-|.|++.
T Consensus 34 s~WrlqGiVg~------~~~~~gwl~~p~g~W~Rv~~g~~L~~gWrV~~i~~~~ltL~~~~~C~P~qw~w~~kG~ 102 (132)
T PF10748_consen 34 SQWRLQGIVGQ------GDRWIGWLQDPQGKWLRVRQGQVLPPGWRVTQITARQLTLQTGDGCEPQQWRWQRKGT 102 (132)
T ss_pred ccceEccEECC------CCcEEEEEECCCCCeEEeccCCCCCCCcEEEEEcCCeEEEccCCCCCchheEeeecCc
Confidence 47999999743 3699999999999999876544 4555554443 24555555666644
No 56
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=36.57 E-value=28 Score=24.46 Aligned_cols=15 Identities=20% Similarity=0.656 Sum_probs=10.1
Q ss_pred cccccccccceeeEE
Q 036257 277 YHCQRCKQKVRALKQ 291 (418)
Q Consensus 277 ~~C~~C~~~~~~~~~ 291 (418)
|.|++|+...-...+
T Consensus 1 y~C~KCg~~~~e~~~ 15 (64)
T PF09855_consen 1 YKCPKCGNEEYESGE 15 (64)
T ss_pred CCCCCCCCcceecce
Confidence 679999986443333
No 57
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=33.58 E-value=1.5e+02 Score=24.39 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=45.3
Q ss_pred CCceEEEEEeeeecCCC------CCcccceeecCCCCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEE
Q 036257 297 APYVLTIHLKRFRAHDP------GQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCF 364 (418)
Q Consensus 297 lP~~L~i~l~Rf~~~~~------~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~ 364 (418)
--.-+.+-++||.|... .++...-+.|...+.++.---.........+|-||-.+-| ..-+||-.-.
T Consensus 33 ~~rrf~l~~NRF~WE~~~~~~~~~eR~rs~L~f~~V~~Vks~gi~~~~~d~vLsLLai~fe~~-e~p~G~v~L~ 105 (138)
T PF11164_consen 33 KERRFALLLNRFRWEDAERRGRPPERVRSALRFDRVLAVKSRGIDRKDPDAVLSLLAITFEPG-EAPAGHVLLT 105 (138)
T ss_pred cCCEEEEEeeeeEeccCccCCCCCcEEEEEEEEccEeeeeecCCCCCCCCceEEEEEEEEEeC-CCCCcEEEEE
Confidence 34568899999998654 3456666777766655443323334557899999999998 6666775443
No 58
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=29.30 E-value=34 Score=29.03 Aligned_cols=41 Identities=15% Similarity=0.416 Sum_probs=26.4
Q ss_pred EeCCCCCccccccccccccccccccccHHHHHhhccccccccCCCcccccccccccceee
Q 036257 230 KCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRAL 289 (418)
Q Consensus 230 ~C~~C~~~s~~~e~f~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~ 289 (418)
.|+.|+.... ...+..+|| ||..-++.. +.|+.||-+..-.
T Consensus 2 ~Cp~C~~~~~----~~~~~~~IP-----------~F~evii~s----f~C~~CGyk~~ev 42 (160)
T smart00709 2 DCPSCGGNGT----TRMLLTSIP-----------YFREVIIMS----FECEHCGYRNNEV 42 (160)
T ss_pred cCCCCCCCCE----EEEEEecCC-----------CcceEEEEE----EECCCCCCccceE
Confidence 4899987543 233445556 366666655 8999999875433
No 59
>PHA02998 RNA polymerase subunit; Provisional
Probab=27.83 E-value=60 Score=27.78 Aligned_cols=48 Identities=17% Similarity=0.321 Sum_probs=27.0
Q ss_pred ccceeeEEE-EEEEeCCCCCccccccccccccccccccccHHHHHhhccccccccCCCccccccccccc
Q 036257 218 HKIFGGRLR-SQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQK 285 (418)
Q Consensus 218 ~~~F~g~~~-~~~~C~~C~~~s~~~e~f~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~ 285 (418)
...|...-. ...+|+.|++... .|+.+...-. -++.. ..|.|..|+..
T Consensus 132 ~~yfnvlpkkt~v~CPkCg~~~A---~f~qlQTRSA------------DEPmT-----~FYkC~~CG~~ 180 (195)
T PHA02998 132 DDYFNVLDEKYNTPCPNCKSKNT---TPMMIQTRAA------------DEPPL-----VRHACRDCKKH 180 (195)
T ss_pred hhheeccCcccCCCCCCCCCCce---EEEEEeeccC------------CCCce-----EEEEcCCCCCc
Confidence 445655444 6688999987543 3344433211 11222 23899999874
No 60
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=27.55 E-value=32 Score=30.14 Aligned_cols=42 Identities=17% Similarity=0.398 Sum_probs=26.4
Q ss_pred EeCCCCCcccccccccccccc-ccccccHHHHHhhccccccccCCCcccccccccccceeeE
Q 036257 230 KCTQCSYCSNKFDPFLDLSLE-IAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALK 290 (418)
Q Consensus 230 ~C~~C~~~s~~~e~f~~l~l~-i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~ 290 (418)
.|+.|+....+. .+... || ||..-++.. +.|+.||-+..-.+
T Consensus 2 ~Cp~C~~~~~~~----~~~~~~IP-----------~F~evii~s----f~C~~CGyr~~ev~ 44 (192)
T TIGR00310 2 DCPSCGGECETV----MKTVNDIP-----------YFGEVLETS----TICEHCGYRSNDVK 44 (192)
T ss_pred cCCCCCCCCEEE----EEEEcCCC-----------CcceEEEEE----EECCCCCCccceeE
Confidence 599998653322 22333 55 466666665 89999998755443
No 61
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=27.00 E-value=93 Score=25.51 Aligned_cols=16 Identities=19% Similarity=0.411 Sum_probs=11.2
Q ss_pred EEEEEEEeCCCCCccc
Q 036257 224 RLRSQVKCTQCSYCSN 239 (418)
Q Consensus 224 ~~~~~~~C~~C~~~s~ 239 (418)
.......|..|+....
T Consensus 66 ~~p~~~~C~~CG~~~~ 81 (135)
T PRK03824 66 EEEAVLKCRNCGNEWS 81 (135)
T ss_pred ecceEEECCCCCCEEe
Confidence 3446679999997543
No 62
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=26.57 E-value=62 Score=35.56 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=22.5
Q ss_pred ecCCCCCceEEEEECCCCCEEEEeCC
Q 036257 353 GWSTHSGHYYCFVRTSSGMWYSLDDN 378 (418)
Q Consensus 353 G~~~~~GHY~a~vr~~~~~W~~~dD~ 378 (418)
|+...+|||+..++.+++++|.||-.
T Consensus 57 ~p~~~sghwimlikg~gn~y~lfdpl 82 (1439)
T PF12252_consen 57 SPRQDSGHWIMLIKGQGNQYYLFDPL 82 (1439)
T ss_pred CCCCcCceeEEEEEcCCCceEEeccc
Confidence 55677899999999999999999854
No 63
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=25.04 E-value=40 Score=28.70 Aligned_cols=42 Identities=19% Similarity=0.510 Sum_probs=25.2
Q ss_pred eCCCCCccccccccccccccccccccHHHHHhhccccccccCCCcccccccccccceeeE
Q 036257 231 CTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALK 290 (418)
Q Consensus 231 C~~C~~~s~~~e~f~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~ 290 (418)
|+.|+....+. .....+|| ||..-++.. +.|+.||-+..-.+
T Consensus 1 CP~Cg~~~~~~---~~~~~~IP-----------~F~evii~s----f~C~~CGyr~~ev~ 42 (163)
T TIGR00340 1 CPVCGSRTLKA---VTYDYDIP-----------YFGKIMLST----YICEKCGYRSTDVY 42 (163)
T ss_pred CCCCCCcceEe---eeEeccCC-----------CcceEEEEE----EECCCCCCchhhee
Confidence 88888642211 12234455 466666665 89999998755443
No 64
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=24.93 E-value=15 Score=37.34 Aligned_cols=30 Identities=17% Similarity=-0.047 Sum_probs=25.6
Q ss_pred CCCCccccCChhhHHHHHHHHhCCHHHHHH
Q 036257 95 IGAGLENLGNTCFLNSVLQCLTYTEPLAAY 124 (418)
Q Consensus 95 ~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ 124 (418)
-..|+.+.+|+|++|+.+|.++.++.|.-+
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~ 105 (492)
T KOG1867|consen 76 EHSGNKKHNNTIDVNNGLLYCFACPDFIYD 105 (492)
T ss_pred cccccccccccceeehhhheeccCCcEeec
Confidence 458999999999999999999999876533
No 65
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=24.79 E-value=91 Score=29.53 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=24.6
Q ss_pred cccccccccceeeEEEEEeeCCceEEEEEe-eeecCCCC
Q 036257 277 YHCQRCKQKVRALKQLTVYKAPYVLTIHLK-RFRAHDPG 314 (418)
Q Consensus 277 ~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~-Rf~~~~~~ 314 (418)
..|+.||.++-.....++..= --+..|++ ||.|+..+
T Consensus 258 ~FCp~CG~~TL~K~aVsv~~d-G~~~~h~k~r~~~n~RG 295 (376)
T KOG2463|consen 258 DFCPSCGHKTLTKCAVSVDED-GNGQTHFKKRFQWNNRG 295 (376)
T ss_pred hcccccCCCeeeEEEEEecCC-CceeEEeecccccccCc
Confidence 469999998655555555444 44677777 88876433
No 66
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=23.97 E-value=2.1e+02 Score=25.06 Aligned_cols=66 Identities=21% Similarity=0.286 Sum_probs=34.3
Q ss_pred cccccccccceeeEEEEEeeCCceEEEEEeeeecCCCCCcccceeecCCCCCCCCCcCCCCCCCceEEEEEEEEe
Q 036257 277 YHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVH 351 (418)
Q Consensus 277 ~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~avI~H 351 (418)
-.|..|..+....++-.|..-|..|.....-|-|. .- -.=.+|-..||.. ......+|+|.|.+..
T Consensus 23 ~~C~~C~~~~~eL~~W~~l~~~t~l~~G~h~fPFS---~L--iPG~LPaS~~lgs----~~l~~I~Yel~A~a~~ 88 (191)
T PF13002_consen 23 SHCADCKTQTTELKRWDFLTHPTTLTKGSHAFPFS---YL--IPGHLPASMDLGS----TPLVSIKYELKAEATY 88 (191)
T ss_pred CcChhHhccceeeeecceecCccccCCCcccCCee---EE--CCCCCccccccCC----CCcEEEEEEEEEEEEE
Confidence 46999988766665555555554433322111110 00 0001233444422 2335689999999887
No 67
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=20.11 E-value=3.6e+02 Score=20.89 Aligned_cols=47 Identities=17% Similarity=0.363 Sum_probs=27.5
Q ss_pred CCceEEEEECC--CCCEEE--EeCCceeeecccccC--CCCcEEEEEEEecCC
Q 036257 358 SGHYYCFVRTS--SGMWYS--LDDNRVVQVNERSVL--EQKAYMLFYVRDRKN 404 (418)
Q Consensus 358 ~GHY~a~vr~~--~~~W~~--~dD~~V~~v~~~~v~--~~~aYil~Y~r~~~~ 404 (418)
-|.|+++.|.. .+.||. +|+..-+.++..--+ ....|..-.-++..+
T Consensus 13 pGeyvviARr~~~G~~Wyvg~in~~~~r~i~l~L~FL~~g~~y~a~i~~D~~~ 65 (103)
T PF14509_consen 13 PGEYVVIARRKRDGDDWYVGGINGEDARTITLPLSFLDKGKKYTATIYTDGPD 65 (103)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEE-TT-EEEEEEGCCS-TT--EEEEEEEE-TT
T ss_pred CceEEEEEEEcCCCCCEEEEEeeCCCceEEEEECcccCCCCcEEEEEEEeCCc
Confidence 49999999986 789996 565544444433323 344576666666553
Done!