Query 036257
Match_columns 418
No_of_seqs 278 out of 1455
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 18:48:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 6.4E-68 2.2E-72 516.2 29.6 314 89-404 1-361 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 2.9E-66 9.8E-71 508.4 27.9 309 92-402 58-396 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 1.4E-65 4.6E-70 496.3 28.8 309 92-403 5-344 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 9E-65 3.1E-69 491.9 22.4 305 95-403 2-352 (355)
5 2ayn_A Ubiquitin carboxyl-term 100.0 6.7E-64 2.3E-68 494.2 25.4 309 93-408 11-400 (404)
6 1nb8_A Ubiquitin carboxyl-term 100.0 9.2E-63 3.2E-67 476.7 27.2 294 93-403 3-316 (353)
7 3mhs_A Ubiquitin carboxyl-term 100.0 6.3E-63 2.2E-67 496.9 23.7 311 90-403 135-475 (476)
8 1vjv_A Ubiquitin carboxyl-term 100.0 2.2E-62 7.6E-67 484.7 22.3 291 92-402 20-414 (415)
9 2f1z_A Ubiquitin carboxyl-term 100.0 1.4E-59 4.8E-64 476.8 25.4 295 92-403 171-485 (522)
10 3ihp_A Ubiquitin carboxyl-term 100.0 1.5E-58 5.1E-63 488.4 25.8 294 90-402 338-853 (854)
11 2vhf_A Ubiquitin carboxyl-term 100.0 2.1E-32 7.3E-37 255.0 12.4 225 94-378 7-309 (374)
12 3mp2_A Non-structural protein 97.9 7.1E-05 2.4E-09 64.3 11.0 180 98-384 15-195 (211)
13 2fe8_A PP1AB, ORF1AB, replicas 97.6 0.0012 4.3E-08 60.4 14.8 194 95-385 101-296 (315)
14 1qmy_A Protease, leader protea 89.0 0.17 5.9E-06 39.9 2.0 25 93-117 10-34 (167)
15 3a43_A HYPD, hydrogenase nicke 56.5 26 0.00088 27.8 6.2 52 224-286 66-117 (139)
16 2ww6_A Fibritin, T4 fibritin; 44.6 6.4 0.00022 21.2 0.5 15 362-377 11-25 (27)
17 1qmy_A Protease, leader protea 38.1 24 0.00083 27.8 3.1 35 346-385 110-144 (167)
18 3o65_A Putative ataxin-3-like 34.9 25 0.00086 29.5 3.0 51 345-401 110-168 (191)
19 2oxg_Z SOXZ protein; immunoglo 33.4 1.1E+02 0.0037 22.9 6.1 55 342-402 19-82 (108)
20 1v8h_A Sulfur oxidation protei 32.0 1.3E+02 0.0045 22.4 6.4 55 342-402 18-81 (107)
21 2kvh_A Zinc finger and BTB dom 29.8 16 0.00054 18.5 0.7 11 275-285 2-12 (27)
22 1qyp_A RNA polymerase II; tran 29.0 15 0.00053 24.0 0.6 11 227-237 14-24 (57)
23 1fv5_A First zinc finger of U- 27.9 16 0.00055 21.3 0.5 13 273-285 5-17 (36)
24 2kvg_A Zinc finger and BTB dom 27.5 15 0.00052 18.7 0.3 11 275-285 2-12 (27)
25 2elm_A Zinc finger protein 406 26.8 20 0.00068 20.1 0.8 13 273-285 6-18 (37)
26 1p7a_A BF3, BKLF, kruppel-like 26.7 22 0.00074 19.7 0.9 13 273-285 8-20 (37)
27 2kvf_A Zinc finger and BTB dom 25.8 20 0.0007 18.2 0.7 11 275-285 2-12 (28)
28 2m0d_A Zinc finger and BTB dom 22.9 25 0.00085 17.9 0.7 11 275-285 2-12 (30)
29 2elx_A Zinc finger protein 406 21.9 28 0.00097 18.8 0.8 12 274-285 5-16 (35)
30 2lvu_A Zinc finger and BTB dom 27.1 20 0.00067 17.9 0.0 10 276-285 2-11 (26)
31 1srk_A Zinc finger protein ZFP 21.5 29 0.001 18.8 0.8 12 274-285 5-16 (35)
32 3c5t_B Exendin-4, exenatide; l 20.9 41 0.0014 19.0 1.2 13 183-195 10-22 (31)
33 2elt_A Zinc finger protein 406 20.2 32 0.0011 18.7 0.8 13 273-285 6-18 (36)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.4e-68 Score=516.23 Aligned_cols=314 Identities=28% Similarity=0.485 Sum_probs=272.3
Q ss_pred ccccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccc-----cccchHHHHHHHHHHHHHHhcCCccChH
Q 036257 89 GTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCH-----IAGFCALCAIQKHVSRALQATGRILAPK 163 (418)
Q Consensus 89 ~~~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~-----~~~~~~l~~l~~~~~~~~~~~~~~v~p~ 163 (418)
|..+.++++||.|+||||||||+||||+++|+||++++...+..... ....++.+++..++..+|......++|.
T Consensus 1 g~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~ 80 (367)
T 2y6e_A 1 GMHIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 80 (367)
T ss_dssp ---CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCH
T ss_pred CCCCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHH
Confidence 44567889999999999999999999999999999999765432211 1234578899999999998888899999
Q ss_pred HHHHHHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCC--------cch------------hhhhccccccceee
Q 036257 164 DLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPS--------ESA------------NAYEKSLVHKIFGG 223 (418)
Q Consensus 164 ~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~--------~~~------------~~~~~s~i~~~F~g 223 (418)
.|+.+++...+.|.+++||||+|||.+||+.|++++....... ... .....++|.++|+|
T Consensus 81 ~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G 160 (367)
T 2y6e_A 81 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHG 160 (367)
T ss_dssp HHHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCE
T ss_pred HHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCc
Confidence 9999999999999999999999999999999999875432110 000 11246789999999
Q ss_pred EEEEEEEeCCCCCcccccccccccccccccc-------------------ccHHHHHhhccccccccCCCcccccccccc
Q 036257 224 RLRSQVKCTQCSYCSNKFDPFLDLSLEIAKA-------------------DSVLKALNNFTAAELLDGGEKEYHCQRCKQ 284 (418)
Q Consensus 224 ~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~-------------------~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~ 284 (418)
++.++++|..|++.+.+.++|++|+|+||.. .+|+++|+.|+.+|.+++.+ .|.|++|++
T Consensus 161 ~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~-~~~C~~C~~ 239 (367)
T 2y6e_A 161 LFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHD-PWYCPNCKK 239 (367)
T ss_dssp EEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-C-CEEETTTTE
T ss_pred EEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCC-CccCCCCCC
Confidence 9999999999999999999999999999853 58999999999999998654 499999999
Q ss_pred cceeeEEEEEeeCCceEEEEEeeeecCCC-CCcccceeecCC-CCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceE
Q 036257 285 KVRALKQLTVYKAPYVLTIHLKRFRAHDP-GQKNDKKVQFGS-TLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYY 362 (418)
Q Consensus 285 ~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~-~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~ 362 (418)
++.+.|+..|.++|+||+|||+||.++.. ..|+.+.|.||. .|||.+|+.........|+|+|||+|.| +.++|||+
T Consensus 240 ~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~ 318 (367)
T 2y6e_A 240 HQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYG-AMGVGHYT 318 (367)
T ss_dssp EECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEEC-SSSSCEEE
T ss_pred CceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCC-CCCCCeee
Confidence 99999999999999999999999998754 489999999996 7999999987766778999999999999 68999999
Q ss_pred EEEECC-CCCEEEEeCCceeeecccccCCCCcEEEEEEEecCC
Q 036257 363 CFVRTS-SGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDRKN 404 (418)
Q Consensus 363 a~vr~~-~~~W~~~dD~~V~~v~~~~v~~~~aYil~Y~r~~~~ 404 (418)
||||.. +++||+|||+.|+++++++|...+||||||+|++..
T Consensus 319 a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 361 (367)
T 2y6e_A 319 AYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDE 361 (367)
T ss_dssp EEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC-
T ss_pred EEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCC
Confidence 999985 789999999999999999999999999999998765
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=2.9e-66 Score=508.40 Aligned_cols=309 Identities=28% Similarity=0.497 Sum_probs=269.8
Q ss_pred cccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCcc-----ccccchHHHHHHHHHHHHHHhcCCccChHHHH
Q 036257 92 FRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSC-----HIAGFCALCAIQKHVSRALQATGRILAPKDLV 166 (418)
Q Consensus 92 ~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~ 166 (418)
+.++++||.|+||||||||+||||+++|+||++++...+.... .....++.+++..++..+|......++|..|+
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHH
Confidence 4678899999999999999999999999999999875432111 11234577788999999998888889999999
Q ss_pred HHHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCc---------c-----------hhhhhccccccceeeEEE
Q 036257 167 SNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSE---------S-----------ANAYEKSLVHKIFGGRLR 226 (418)
Q Consensus 167 ~~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~---------~-----------~~~~~~s~i~~~F~g~~~ 226 (418)
.+++...+.|..+.||||+|||.+||+.|++++........ . ......++|.++|+|++.
T Consensus 138 ~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEE
Confidence 99999999999999999999999999999999865422110 0 012346889999999999
Q ss_pred EEEEeCCCCCcccccccccccccccccc--ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEE
Q 036257 227 SQVKCTQCSYCSNKFDPFLDLSLEIAKA--DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIH 304 (418)
Q Consensus 227 ~~~~C~~C~~~s~~~e~f~~l~l~i~~~--~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~ 304 (418)
++++|..|++.+.+.++|++|+|+||.. .+|+++|+.|+..|.+++.+ .|.|++|++++.+.++..|.++|+||+||
T Consensus 218 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n-~~~C~~C~~~~~a~k~~~i~~lP~vLiih 296 (396)
T 2gfo_A 218 STVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNN-RFYCSHCRARRDSLKKIEIWKLPPVLLVH 296 (396)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTT-CEEETTTTEEECEEEEEEEEECCSEEEEE
T ss_pred EEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCc-ccccCCcccccceEEEEEEecCCcEEEEE
Confidence 9999999999999999999999999964 69999999999999998754 49999999999999999999999999999
Q ss_pred EeeeecCCC-CCcccceeecC-CCCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEECC-CCCEEEEeCCcee
Q 036257 305 LKRFRAHDP-GQKNDKKVQFG-STLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTS-SGMWYSLDDNRVV 381 (418)
Q Consensus 305 l~Rf~~~~~-~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~-~~~W~~~dD~~V~ 381 (418)
|+||.+++. ..|+.+.|.|| +.|||.+|+........+|+|+|||+|.| +.++|||+||||.. +++||+|||+.|+
T Consensus 297 LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~ 375 (396)
T 2gfo_A 297 LKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVS 375 (396)
T ss_dssp ECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEEEEETTEEE
T ss_pred ecceeccCccceecCceEecchhhccccccccCCCCCCceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEEEEeCCCeE
Confidence 999998764 37999999999 57999999987666667999999999999 99999999999984 7899999999999
Q ss_pred eecccccCCCCcEEEEEEEec
Q 036257 382 QVNERSVLEQKAYMLFYVRDR 402 (418)
Q Consensus 382 ~v~~~~v~~~~aYil~Y~r~~ 402 (418)
++++++|...+||||||+|++
T Consensus 376 ~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 376 DISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp ECCHHHHSCTTEEEEEEECC-
T ss_pred ECCHHHcCCCCceEEEEEEcC
Confidence 999999999999999999874
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1.4e-65 Score=496.32 Aligned_cols=309 Identities=33% Similarity=0.579 Sum_probs=269.4
Q ss_pred cccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCcc---ccccchHHHHHHHHHHHHH-HhcCCccChHHHHH
Q 036257 92 FRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSC---HIAGFCALCAIQKHVSRAL-QATGRILAPKDLVS 167 (418)
Q Consensus 92 ~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~---~~~~~~~l~~l~~~~~~~~-~~~~~~v~p~~~~~ 167 (418)
..++++||.|+||||||||+||+|+++|+||++++...+.... .....++++++..++..+| ......++|..|++
T Consensus 5 ~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~ 84 (348)
T 3nhe_A 5 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKT 84 (348)
T ss_dssp -CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHH
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHHH
Confidence 4678899999999999999999999999999999875433222 2245678999999999998 46678999999999
Q ss_pred HHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcch--------------------hhhhccccccceeeEEEE
Q 036257 168 NLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESA--------------------NAYEKSLVHKIFGGRLRS 227 (418)
Q Consensus 168 ~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~--------------------~~~~~s~i~~~F~g~~~~ 227 (418)
++....+.|.++.||||+|||.+||+.|++++.......... .....++|.++|+|++.+
T Consensus 85 ~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~ 164 (348)
T 3nhe_A 85 QIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKS 164 (348)
T ss_dssp HHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEE
T ss_pred HHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceEEEE
Confidence 999999999999999999999999999999985432111100 122357899999999999
Q ss_pred EEEeCCCCCcccccccccccccccccc----ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEE
Q 036257 228 QVKCTQCSYCSNKFDPFLDLSLEIAKA----DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTI 303 (418)
Q Consensus 228 ~~~C~~C~~~s~~~e~f~~l~l~i~~~----~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i 303 (418)
+++|..|++.+.+.++|+.|+|++|.. .+|+++|+.|+.+|.+++.++ |.|++|++++.+.++..|.++|++|+|
T Consensus 165 ~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~-~~C~~C~~~~~~~k~~~i~~lP~vL~i 243 (348)
T 3nhe_A 165 SLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEK-PTCCRCRGRKRCIKKFSIQRFPKILVL 243 (348)
T ss_dssp EEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGC-CEETTTTEECCEEEEEEEEECCSEEEE
T ss_pred EEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCc-eECCCCCCcccEEEEEEeecCCceEEE
Confidence 999999999999999999999999974 399999999999999987554 999999999999999999999999999
Q ss_pred EEeeeecCC-CCCcccceeecC-CCCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEEC-CCCCEEEEeCCce
Q 036257 304 HLKRFRAHD-PGQKNDKKVQFG-STLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRT-SSGMWYSLDDNRV 380 (418)
Q Consensus 304 ~l~Rf~~~~-~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~-~~~~W~~~dD~~V 380 (418)
||+||.++. ...|+.+.|.|| +.|||.+|+.... ....|+|+|||+|.| +..+|||+||||. .+++||+|||+.|
T Consensus 244 ~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~-~~~~Y~L~avv~H~G-~~~~GHY~~~~~~~~~~~W~~~nD~~V 321 (348)
T 3nhe_A 244 HLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT-NHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSV 321 (348)
T ss_dssp EECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC-CCCEEEEEEEEEEEE-CSSCEEEEEEEECTTTCCEEEEETTEE
T ss_pred EEEcccccCCceeecCcceeccCCcCCHhhhcCCCC-CCCcEEEEEEEEccC-CCCCcccEEEEccCCCCcEEEEeCCCc
Confidence 999999775 458999999999 6899999997643 356899999999999 7899999999998 4789999999999
Q ss_pred eeecccccCCCCcEEEEEEEecC
Q 036257 381 VQVNERSVLEQKAYMLFYVRDRK 403 (418)
Q Consensus 381 ~~v~~~~v~~~~aYil~Y~r~~~ 403 (418)
+++++++|...+||||||+|++.
T Consensus 322 ~~v~~~~v~~~~aY~LfY~r~~~ 344 (348)
T 3nhe_A 322 TPMSSSQVRTSDAYLLFYELASP 344 (348)
T ss_dssp EEECGGGTCCTTEEEEEEEECC-
T ss_pred eECCHHHcCCCCceEEEEEecCC
Confidence 99999999999999999999864
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=9e-65 Score=491.88 Aligned_cols=305 Identities=33% Similarity=0.516 Sum_probs=258.8
Q ss_pred CCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCcc--ccccchHHHHHHHHHHHHHHhcC-CccChHHHHHHHHh
Q 036257 95 IGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSC--HIAGFCALCAIQKHVSRALQATG-RILAPKDLVSNLRC 171 (418)
Q Consensus 95 ~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~--~~~~~~~l~~l~~~~~~~~~~~~-~~v~p~~~~~~l~~ 171 (418)
|.+||.|+||||||||+||+|+++|+||++++........ .....++++++..++..+|.... ..++|..|+.++..
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~~ 81 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQK 81 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Confidence 6799999999999999999999999999999875432211 12234688899999998887654 78999999999999
Q ss_pred hhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcc-----------------------------------hhhhhccc
Q 036257 172 ISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSES-----------------------------------ANAYEKSL 216 (418)
Q Consensus 172 ~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~-----------------------------------~~~~~~s~ 216 (418)
..+.|.++.||||+|||.+||+.|++++......... ......++
T Consensus 82 ~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 161 (355)
T 3i3t_A 82 YVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSK 161 (355)
T ss_dssp HCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCSH
T ss_pred hChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCCc
Confidence 9999999999999999999999999998653321100 00224578
Q ss_pred cccceeeEEEEEEEeCCCCCcccccccccccccccccc------ccHHHHHhhccccccccCCCcccccccccccceeeE
Q 036257 217 VHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKA------DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALK 290 (418)
Q Consensus 217 i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~------~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~ 290 (418)
|.++|+|++.+.++|..|++.+.+.++|++|+|++|.. .+|+++|+.|+..|.+++.+ .|.|++|++++.+.+
T Consensus 162 i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n-~~~C~~C~~~~~a~k 240 (355)
T 3i3t_A 162 IVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESEN-APVCDRCRQKTRSTK 240 (355)
T ss_dssp HHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGG-CCCCSSSCCCCCEEE
T ss_pred ccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCC-CeeCCCCCCccceEE
Confidence 99999999999999999999999999999999999864 49999999999999998644 499999999999999
Q ss_pred EEEEeeCCceEEEEEeeeecCCC-CCcccceeecC-CCCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEECC
Q 036257 291 QLTVYKAPYVLTIHLKRFRAHDP-GQKNDKKVQFG-STLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTS 368 (418)
Q Consensus 291 ~~~i~~lP~~L~i~l~Rf~~~~~-~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~ 368 (418)
+..|.++|+||+|||+||.++.. ..|+...|.|| +.|||.+|+.... +...|+|+|||+|.| +.++|||+||+|.
T Consensus 241 ~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~-~~~~Y~L~avv~H~G-~~~~GHY~~~~~~- 317 (355)
T 3i3t_A 241 KLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA-GSPVYQLYALCNHSG-SVHYGHYTALCRC- 317 (355)
T ss_dssp EEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC-----CCEEEEEEEEEEEE-ETTEEEEEEEEEE-
T ss_pred EEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC-CCcceEEEEEEEecC-CCCCCeEEEEEEc-
Confidence 99999999999999999998753 47999999999 6799999987643 456899999999999 8999999999998
Q ss_pred CCCEEEEeCCceeeecccccCCCCcEEEEEEEecC
Q 036257 369 SGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDRK 403 (418)
Q Consensus 369 ~~~W~~~dD~~V~~v~~~~v~~~~aYil~Y~r~~~ 403 (418)
.+.||+|||+.|+++++++|...+||||||+|.+.
T Consensus 318 ~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~ 352 (355)
T 3i3t_A 318 QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQE 352 (355)
T ss_dssp TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC--
T ss_pred CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccC
Confidence 56699999999999999999999999999999854
No 5
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=6.7e-64 Score=494.24 Aligned_cols=309 Identities=25% Similarity=0.354 Sum_probs=258.5
Q ss_pred ccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCC--cc-ccccchHHHHHHHHHHHHHHhcCCccChHHHHHHH
Q 036257 93 RRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQS--SC-HIAGFCALCAIQKHVSRALQATGRILAPKDLVSNL 169 (418)
Q Consensus 93 ~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~--~~-~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l 169 (418)
...++||.|+||||||||+||+|+++|+||++++...... .. .....+++++|+.+|..++.+. ..++|..|+.+|
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~l 89 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQFL 89 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCC-CcCChHHHHHHH
Confidence 5678999999999999999999999999999999865441 11 1235679999999999999875 789999999999
Q ss_pred HhhhccCC------CCCcCcHHHHHHHHHHHHhhhcCCCCCCCcc----------hhhhhccccccceeeEEEEEEEeCC
Q 036257 170 RCISRNFR------NSRQEDAHEYMVNLLESMHKCCLPSGVPSES----------ANAYEKSLVHKIFGGRLRSQVKCTQ 233 (418)
Q Consensus 170 ~~~~~~f~------~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~----------~~~~~~s~i~~~F~g~~~~~~~C~~ 233 (418)
+...+.|. ++.||||+|||.+||+.|++++......... ......++|+++|+|++.++++|..
T Consensus 90 ~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~ 169 (404)
T 2ayn_A 90 HMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTE 169 (404)
T ss_dssp HHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESS
T ss_pred HHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEecC
Confidence 99888887 4899999999999999999998654321110 0123457899999999999999999
Q ss_pred CCCcc--cccccccccccccccc-ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeec
Q 036257 234 CSYCS--NKFDPFLDLSLEIAKA-DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRA 310 (418)
Q Consensus 234 C~~~s--~~~e~f~~l~l~i~~~-~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~ 310 (418)
|++.+ .+.++|++|+|+|+.. .+|+++|+.++.++ +. +.|++|++...+.++.+|.++|+||+|||+||.+
T Consensus 170 C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~-l~-----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~ 243 (404)
T 2ayn_A 170 SEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEE-IT-----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFY 243 (404)
T ss_dssp SCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEEC-CC-----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCC
T ss_pred CCCccCceeeccCceEEeecCCCcccHHHHHHHhcccc-ee-----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEE
Confidence 99985 7999999999999975 68999999998744 33 7899999999999999999999999999999998
Q ss_pred CC---CCCcccceeecCCCCCCCCCcCCC-------------------------------------------------CC
Q 036257 311 HD---PGQKNDKKVQFGSTLDMKPFVSGS-------------------------------------------------YE 338 (418)
Q Consensus 311 ~~---~~~K~~~~v~fp~~Ldl~~~~~~~-------------------------------------------------~~ 338 (418)
+. ...|+.+.|.||..|||.+|+..+ ..
T Consensus 244 ~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 323 (404)
T 2ayn_A 244 KEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSN 323 (404)
T ss_dssp CCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTC
T ss_pred ecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcC
Confidence 75 348999999999999999998631 12
Q ss_pred CCceEEEEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCceeeecccccCCCC-------cEEEEEEEecCCCCCC
Q 036257 339 GDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQK-------AYMLFYVRDRKNIVPR 408 (418)
Q Consensus 339 ~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~v~~~~v~~~~-------aYil~Y~r~~~~~~~~ 408 (418)
....|+|+|||+|.|.++++|||+||||..+++||+|||+.|+++++++|.... ||||||+|++....+.
T Consensus 324 ~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~~~~~~~ 400 (404)
T 2ayn_A 324 NCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEIMEE 400 (404)
T ss_dssp CCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC-------
T ss_pred CCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEEecCCCCCCC
Confidence 347899999999999779999999999988899999999999999999998755 9999999987754443
No 6
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=9.2e-63 Score=476.67 Aligned_cols=294 Identities=25% Similarity=0.446 Sum_probs=253.1
Q ss_pred ccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhh
Q 036257 93 RRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCI 172 (418)
Q Consensus 93 ~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~ 172 (418)
.++++||.|+||||||||+||+|+++|+||++++...... .....++.++++.+|..++.+. .++.|..|+..+.
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~--~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~~~-- 77 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG--DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKSFG-- 77 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT--SCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHHHT--
T ss_pred CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC--CcccccHHHHHHHHHHHHhhcC-CCCCCHHHHhhcC--
Confidence 4678999999999999999999999999999998643221 1233467889999998888754 5789999988774
Q ss_pred hccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCcccccccccccccccc
Q 036257 173 SRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIA 252 (418)
Q Consensus 173 ~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~ 252 (418)
.+.|..+.||||+||+.+||+.|++++.... ..++|.++|+|++.++++|..|++.+.+.++|++|+|+||
T Consensus 78 ~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~~---------~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~ 148 (353)
T 1nb8_A 78 WETLDSFMQHDVQELCRVLLDNVENKMKGTC---------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIK 148 (353)
T ss_dssp CCBTTTTTTSCHHHHHHHHHHHHHHHTTTST---------TTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCT
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHHhcCCC---------ccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEEC
Confidence 3678899999999999999999999864321 3467999999999999999999999999999999999999
Q ss_pred ccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCC---CCCcccceeecCCCCCC
Q 036257 253 KADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHD---PGQKNDKKVQFGSTLDM 329 (418)
Q Consensus 253 ~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~---~~~K~~~~v~fp~~Ldl 329 (418)
...++.++|..|+.+|.+++.+ .|.|+.|+ ++.+.++..|.++|+||+|||+||.++. ...|+.+.|.||..|||
T Consensus 149 ~~~~l~~~L~~~~~~E~l~~~~-~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl 226 (353)
T 1nb8_A 149 GKKNIFESFVDYVAVEQLDGDN-KYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL 226 (353)
T ss_dssp TCSBHHHHHHHHTCCEEECTTT-CEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEEC
T ss_pred CCcchHHHHHHhhCccccCCCc-cccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeeh
Confidence 9999999999999999998754 49999996 4678999999999999999999999875 34799999999999999
Q ss_pred CCCcCCCC-CCCceEEEEEEEEeeecCCCCCceEEEEEC-CCCCEEEEeCCceeeecccccCC---------------CC
Q 036257 330 KPFVSGSY-EGDLKYTLYGVLVHHGWSTHSGHYYCFVRT-SSGMWYSLDDNRVVQVNERSVLE---------------QK 392 (418)
Q Consensus 330 ~~~~~~~~-~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~-~~~~W~~~dD~~V~~v~~~~v~~---------------~~ 392 (418)
.+|+.... .....|+|+|||+|.| +.++|||+||||. .+++||.|||+.|+++++++|.. .+
T Consensus 227 ~~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~ 305 (353)
T 1nb8_A 227 DEFLQKTDPKDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTN 305 (353)
T ss_dssp GGGBSSCCTTSCCEEEEEEEEEEES-STTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEE
T ss_pred hhhhcccCCCCCceEEEEEEEEEeC-CCCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCe
Confidence 99997643 3457999999999999 6899999999996 68899999999999999988863 57
Q ss_pred cEEEEEEEecC
Q 036257 393 AYMLFYVRDRK 403 (418)
Q Consensus 393 aYil~Y~r~~~ 403 (418)
||||||+|++.
T Consensus 306 aYiLfY~r~~~ 316 (353)
T 1nb8_A 306 AYMLVYIRESK 316 (353)
T ss_dssp EEEEEEEETTT
T ss_pred EEEEEEEECch
Confidence 99999999875
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=6.3e-63 Score=496.93 Aligned_cols=311 Identities=32% Similarity=0.573 Sum_probs=265.1
Q ss_pred cccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCcc--ccccchHHHHHHHHHHHHHHhcC---------C
Q 036257 90 TTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSC--HIAGFCALCAIQKHVSRALQATG---------R 158 (418)
Q Consensus 90 ~~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~--~~~~~~~l~~l~~~~~~~~~~~~---------~ 158 (418)
..+.++.+||.|+||||||||+||+|+++|+||++++...+...+ .....++.+++..++..++.... .
T Consensus 135 ~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~ 214 (476)
T 3mhs_A 135 MERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTS 214 (476)
T ss_dssp GGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------C
T ss_pred ccCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhccccccccccccc
Confidence 346788999999999999999999999999999999975433222 23456789999999999987432 2
Q ss_pred ccChHHHHHHHH---hhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCC----CcchhhhhccccccceeeEEEEEEEe
Q 036257 159 ILAPKDLVSNLR---CISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVP----SESANAYEKSLVHKIFGGRLRSQVKC 231 (418)
Q Consensus 159 ~v~p~~~~~~l~---~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~----~~~~~~~~~s~i~~~F~g~~~~~~~C 231 (418)
.+.|..+...+. ...+.|.+++||||+|||.+||+.|++++...... .........++|+++|+|++.++++|
T Consensus 215 ~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C 294 (476)
T 3mhs_A 215 TNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVC 294 (476)
T ss_dssp CCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEEC
T ss_pred ccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEE
Confidence 566776666554 67789999999999999999999999886432211 11122334678999999999999999
Q ss_pred CCCCCccc-cccccccccccccccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeec
Q 036257 232 TQCSYCSN-KFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRA 310 (418)
Q Consensus 232 ~~C~~~s~-~~e~f~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~ 310 (418)
..|+..+. +.++|++|+|++|...+|+++|+.|+.+|.+++ ++ |.|++|+.++.+.++.+|.++|+||+|||+||.+
T Consensus 295 ~~C~~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~-~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~ 372 (476)
T 3mhs_A 295 PGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKD-FN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEH 372 (476)
T ss_dssp TTTCCCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSS-CC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEE
T ss_pred CCCCCeeCCcccchhhhccchhhhhHHHHHHHHhcChhhccC-CC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccc
Confidence 99999875 489999999999999999999999999999984 34 9999999999999999999999999999999997
Q ss_pred CC--CCCcccceeecCCCCCCCCCcCCCCC---------CCceEEEEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCc
Q 036257 311 HD--PGQKNDKKVQFGSTLDMKPFVSGSYE---------GDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNR 379 (418)
Q Consensus 311 ~~--~~~K~~~~v~fp~~Ldl~~~~~~~~~---------~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~ 379 (418)
+. ...|+.+.|.||..|||.+|+..... ...+|+|+|||+|.| +.++|||+||+|..+++||+|||+.
T Consensus 373 ~~~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~vr~~~~~W~~fnD~~ 451 (476)
T 3mhs_A 373 LLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKG-TVNEGHYIAFCKISGGQWFKFNDSM 451 (476)
T ss_dssp CTTSCEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEE-CSSSEEEEEEEECTTSCEEEEETTE
T ss_pred cCCCCeEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCC-CCCCCceEEEEECCCCcEEEEeCCc
Confidence 63 34799999999999999999876432 457899999999999 7999999999998889999999999
Q ss_pred eeeecccccCCCCcEEEEEEEecC
Q 036257 380 VVQVNERSVLEQKAYMLFYVRDRK 403 (418)
Q Consensus 380 V~~v~~~~v~~~~aYil~Y~r~~~ 403 (418)
|+++++++|+..+||||||+|++.
T Consensus 452 V~~v~~~~v~~~~aYiLfY~r~~~ 475 (476)
T 3mhs_A 452 VSSISQEEVLKEQAYLLFYTIRQV 475 (476)
T ss_dssp EEEECHHHHTTSCEEEEEEEEEEE
T ss_pred eEECCHHHhccCCcEEEEEEEecC
Confidence 999999999999999999999864
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=2.2e-62 Score=484.74 Aligned_cols=291 Identities=21% Similarity=0.295 Sum_probs=249.4
Q ss_pred cccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCcccc-------ccchHHHHHHHHHHHHHHhcCCccChHH
Q 036257 92 FRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHI-------AGFCALCAIQKHVSRALQATGRILAPKD 164 (418)
Q Consensus 92 ~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~~~v~p~~ 164 (418)
..++++||.|+||||||||+||+|+++|+||++++.......... ...+++++|+.+|..++.+....++|..
T Consensus 20 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~ 99 (415)
T 1vjv_A 20 FAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVV 99 (415)
T ss_dssp CCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHH
T ss_pred cCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHHH
Confidence 467789999999999999999999999999999998654432222 1457999999999999988778999999
Q ss_pred HHHHHHhhhccCC-------CCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCc
Q 036257 165 LVSNLRCISRNFR-------NSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYC 237 (418)
Q Consensus 165 ~~~~l~~~~~~f~-------~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~ 237 (418)
|+++|+...+.|. .+.||||+|||.+||+.|++++.. ++|.++|+ ++.++++|..|++.
T Consensus 100 ~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~-------------~~i~~~F~-~~~~~~~C~~C~~~ 165 (415)
T 1vjv_A 100 LLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD-------------KFSEDFRI-QFKTTIKDTANDND 165 (415)
T ss_dssp HHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-------------HHHTTTCE-EEEEEEEETTEEEE
T ss_pred HHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc-------------chHHHHHH-hheEEEEECCCCCC
Confidence 9999999989998 799999999999999999998632 67999999 99999999999998
Q ss_pred c--cccccccccccccccc-ccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCC-
Q 036257 238 S--NKFDPFLDLSLEIAKA-DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDP- 313 (418)
Q Consensus 238 s--~~~e~f~~l~l~i~~~-~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~- 313 (418)
+ .+.++|++|+|+|+.. .+|+++|+.++..+ +. +.|++|++...+.++.+|.++|+||+|||+||.++..
T Consensus 166 s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~-i~-----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~ 239 (415)
T 1vjv_A 166 ITVKENESDSKLQCHISGTTNFMRNGLLEGLNEK-IE-----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRST 239 (415)
T ss_dssp EEEECCCEESCEEECCCTTCCBHHHHHHHHHEEC---------------CCCCEEEEEEEEECBSEEEEEECCEEEETTT
T ss_pred ccccccccceeeeeccccccchHHHHHHHHhhhh-hh-----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCC
Confidence 6 5999999999999976 58999999988754 32 6899999999999999999999999999999998753
Q ss_pred --CCcccceeecCCCCCCCCCcCCC-------------------------------------------------------
Q 036257 314 --GQKNDKKVQFGSTLDMKPFVSGS------------------------------------------------------- 336 (418)
Q Consensus 314 --~~K~~~~v~fp~~Ldl~~~~~~~------------------------------------------------------- 336 (418)
..|+.+.|.||..|||.+|+..+
T Consensus 240 ~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 319 (415)
T 1vjv_A 240 NKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNES 319 (415)
T ss_dssp TEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHH
T ss_pred CcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHh
Confidence 37999999999999999987531
Q ss_pred --------------------CCCCceEEEEEEEEeeecCCCCCceEEEEEC--CCCCEEEEeCCceeeecccccCCCC--
Q 036257 337 --------------------YEGDLKYTLYGVLVHHGWSTHSGHYYCFVRT--SSGMWYSLDDNRVVQVNERSVLEQK-- 392 (418)
Q Consensus 337 --------------------~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~--~~~~W~~~dD~~V~~v~~~~v~~~~-- 392 (418)
......|+|+|||+|.|.++++|||+||||. .+++||+|||+.|+++++++|....
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g 399 (415)
T 1vjv_A 320 EKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGG 399 (415)
T ss_dssp HHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCC
T ss_pred hhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCC
Confidence 1234789999999999977999999999998 7899999999999999999998755
Q ss_pred -----cEEEEEEEec
Q 036257 393 -----AYMLFYVRDR 402 (418)
Q Consensus 393 -----aYil~Y~r~~ 402 (418)
||||||+|++
T Consensus 400 ~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 400 GESDSALILMYKGFG 414 (415)
T ss_dssp TTSCEEEEEEEEETT
T ss_pred CCcceEEEEEEEecC
Confidence 9999999975
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-59 Score=476.82 Aligned_cols=295 Identities=25% Similarity=0.440 Sum_probs=254.1
Q ss_pred cccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHh
Q 036257 92 FRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRC 171 (418)
Q Consensus 92 ~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~ 171 (418)
..++++||.|+||||||||+||+|+++|+||++++...... .....++.++|+.+|..++.+. .++.|..|+..+.
T Consensus 171 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~--~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~~~- 246 (522)
T 2f1z_A 171 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG--DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKSFG- 246 (522)
T ss_dssp TTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS--SCTTTCHHHHHHHHHHHHHHCS-SCBCCTTHHHHTC-
T ss_pred ccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC--CcccchHHHHHHHHHHHHhcCC-CccCcHHHHhhcC-
Confidence 35778999999999999999999999999999997643221 2233467889999998888754 5788988887764
Q ss_pred hhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCccccccccccccccc
Q 036257 172 ISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEI 251 (418)
Q Consensus 172 ~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i 251 (418)
.+.|..+.||||+||+.+||+.|++++.... ..++|.++|+|++.++++|..|++.+.+.++|++|+|+|
T Consensus 247 -~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~~---------~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i 316 (522)
T 2f1z_A 247 -WETLDSFMQHDVQELCRVLLDNVENKMKGTC---------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSI 316 (522)
T ss_dssp -CCTTTSSTTSCHHHHHHHHHHHHHHHHTTST---------TTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECC
T ss_pred -CccCCCcccccHHHHHHHHHHHHHhhccCCc---------cccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEEEe
Confidence 3678899999999999999999999875321 246799999999999999999999999999999999999
Q ss_pred cccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCC---CCcccceeecCCCCC
Q 036257 252 AKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDP---GQKNDKKVQFGSTLD 328 (418)
Q Consensus 252 ~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~---~~K~~~~v~fp~~Ld 328 (418)
|...+|+++|..|+..|.+++.+ +|.|+.|+ ++.+.++..|.++|+||+|||+||.++.. ..|+.+.|.||..||
T Consensus 317 ~~~~~l~~~L~~~~~~E~l~~~n-~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ld 394 (522)
T 2f1z_A 317 KGKKNIFESFVDYVAVEQLDGDN-KYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLP 394 (522)
T ss_dssp TTCCBHHHHHHHHTCEEEECTTS-CBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEE
T ss_pred CCcccchHHHHHhhceeecCCcc-eeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeec
Confidence 99999999999999999998754 49999996 46889999999999999999999998753 479999999999999
Q ss_pred CCCCcCCCC-CCCceEEEEEEEEeeecCCCCCceEEEEEC-CCCCEEEEeCCceeeecccccCC---------------C
Q 036257 329 MKPFVSGSY-EGDLKYTLYGVLVHHGWSTHSGHYYCFVRT-SSGMWYSLDDNRVVQVNERSVLE---------------Q 391 (418)
Q Consensus 329 l~~~~~~~~-~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~-~~~~W~~~dD~~V~~v~~~~v~~---------------~ 391 (418)
|.+|+.... .....|+|+|||+|.| +.++|||+||||. .+++||+|||+.|+++++++|+. .
T Consensus 395 l~~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~ 473 (522)
T 2f1z_A 395 LDEFLQKTDPKDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCT 473 (522)
T ss_dssp CGGGBSSCCTTSCCEEEEEEEEEEEC-SSSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CE
T ss_pred chhhhccccCCCCcEEEEEEEEEecc-cCCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCC
Confidence 999997643 3457999999999999 6899999999996 68899999999999999988874 5
Q ss_pred CcEEEEEEEecC
Q 036257 392 KAYMLFYVRDRK 403 (418)
Q Consensus 392 ~aYil~Y~r~~~ 403 (418)
+||||||+|++.
T Consensus 474 ~aYiLfY~r~~~ 485 (522)
T 2f1z_A 474 NAYMLVYIRESK 485 (522)
T ss_dssp EEEEEEEEETTS
T ss_pred ceEEEEEEECCc
Confidence 799999999865
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-58 Score=488.36 Aligned_cols=294 Identities=22% Similarity=0.335 Sum_probs=256.4
Q ss_pred cccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCC---CccccccchHHHHHHHHHHHHHHh-----------
Q 036257 90 TTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQ---SSCHIAGFCALCAIQKHVSRALQA----------- 155 (418)
Q Consensus 90 ~~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~---~~~~~~~~~~l~~l~~~~~~~~~~----------- 155 (418)
..+.++++||.|+||||||||+||+|+++|+||++++..... ........++++++..++..++..
T Consensus 338 p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~ 417 (854)
T 3ihp_A 338 PLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGD 417 (854)
T ss_dssp CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC----------
T ss_pred cccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccc
Confidence 557889999999999999999999999999999999853221 112234557899999999988853
Q ss_pred ---------cCCccChHHHHHHHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEE
Q 036257 156 ---------TGRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLR 226 (418)
Q Consensus 156 ---------~~~~v~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~ 226 (418)
....++|..|++++....+.|..++||||+|||.+||+.|++++.. .+.+.++|+|++.
T Consensus 418 ~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~------------~s~i~~lF~G~l~ 485 (854)
T 3ihp_A 418 GERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS------------SENPNEVFRFLVE 485 (854)
T ss_dssp -----------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT------------SCCGGGGTCEEEE
T ss_pred cccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhcc------------cCCchhhcCceEE
Confidence 3458999999999999999999999999999999999999998632 3568999999999
Q ss_pred EEEEeCCCCCcccccccccccccccccc--------------------------------ccHHHHHhhccccccccCCC
Q 036257 227 SQVKCTQCSYCSNKFDPFLDLSLEIAKA--------------------------------DSVLKALNNFTAAELLDGGE 274 (418)
Q Consensus 227 ~~~~C~~C~~~s~~~e~f~~l~l~i~~~--------------------------------~~l~~~L~~~~~~e~~~~~~ 274 (418)
++++|..|++.+.+.++|+.|+|+||.. .+|+++|+.|+.+|.+++
T Consensus 486 s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~-- 563 (854)
T 3ihp_A 486 EKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD-- 563 (854)
T ss_dssp EEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE--
T ss_pred EEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee--
Confidence 9999999999999999999999999963 389999999999999987
Q ss_pred cccccccccccceeeEEEEEeeCCceEEEEEeeeecCC--CCCcccceeecCCCCCCCCCcCCCC---------------
Q 036257 275 KEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHD--PGQKNDKKVQFGSTLDMKPFVSGSY--------------- 337 (418)
Q Consensus 275 ~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~--~~~K~~~~v~fp~~Ldl~~~~~~~~--------------- 337 (418)
|.|++|+.++.+.|+.+|.++|+||+|||+||.++. ...|+.+.|.||..|||++|+..+.
T Consensus 564 --y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~~lp~~~~~~~ 641 (854)
T 3ihp_A 564 --FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLV 641 (854)
T ss_dssp --EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCTTCCBCCCC-----
T ss_pred --eeccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhccCCCCCCceeccccccccc
Confidence 999999999999999999999999999999999864 3479999999999999999865210
Q ss_pred --------------------------------------------------------------------------------
Q 036257 338 -------------------------------------------------------------------------------- 337 (418)
Q Consensus 338 -------------------------------------------------------------------------------- 337 (418)
T Consensus 642 ~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~ 721 (854)
T 3ihp_A 642 TPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPE 721 (854)
T ss_dssp -----------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCH
T ss_pred ccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCCH
Confidence
Q ss_pred ----------------------------------------------------------------------CCCceEEEEE
Q 036257 338 ----------------------------------------------------------------------EGDLKYTLYG 347 (418)
Q Consensus 338 ----------------------------------------------------------------------~~~~~Y~L~a 347 (418)
.+..+|+|+|
T Consensus 722 e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~a 801 (854)
T 3ihp_A 722 DCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFA 801 (854)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC------------------CCCCCCCSEEEEEE
T ss_pred HHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCcccccccccccccccccccccccccccccCCCCCCCceEEEEE
Confidence 0112699999
Q ss_pred EEEeeecCCCCCceEEEEECCCCCEEEEeCCceeeecccccCCCCcEEEEEEEec
Q 036257 348 VLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDR 402 (418)
Q Consensus 348 vI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~v~~~~v~~~~aYil~Y~r~~ 402 (418)
||+|.|.+.++|||+||||. +++||+|||+.|+++ ++.....||||||+|.+
T Consensus 802 vi~H~G~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 802 FISHMGTSTMCGHYVCHIKK-EGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp EEEEESSCSSCCEEEEEEEE-TTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred EEEeecCCCCCcCeEEEEEe-CCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence 99999988999999999999 789999999999997 45677899999999975
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.97 E-value=2.1e-32 Score=255.01 Aligned_cols=225 Identities=18% Similarity=0.209 Sum_probs=153.5
Q ss_pred cCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHH-HHHHHHHHHhcCCccChHHHHHHHHhh
Q 036257 94 RIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAI-QKHVSRALQATGRILAPKDLVSNLRCI 172 (418)
Q Consensus 94 ~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l-~~~~~~~~~~~~~~v~p~~~~~~l~~~ 172 (418)
..|.||+|+||||||||+||+|+.+|++++.++..............+...| ..++..+- . ..+.|..++..|+..
T Consensus 7 g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lr-k--~~~~P~~~l~~LR~~ 83 (374)
T 2vhf_A 7 GKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLR-I--YGYVCATKIMKLRKI 83 (374)
T ss_dssp EESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHH-H--TSEECHHHHHHHHHH
T ss_pred CCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHh-h--cCCCcHHHHHHHHHH
Confidence 3579999999999999999999999999999998654333211112244455 34444443 3 779999999999999
Q ss_pred hccCCC-----CCcCcHHHHHHHHHHHHhhh-cC-CCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCccccccccc
Q 036257 173 SRNFRN-----SRQEDAHEYMVNLLESMHKC-CL-PSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFL 245 (418)
Q Consensus 173 ~~~f~~-----~~QqDa~Efl~~ll~~L~~~-~~-~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~ 245 (418)
.++|.. +.||||.||+..|+..|... .. .... .......+++.++|. .+..
T Consensus 84 ~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s---~~~~~~~~~~~q~f~--------------E~~e----- 141 (374)
T 2vhf_A 84 LEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRS---AGQKVQDCYFYQIFM--------------EKNE----- 141 (374)
T ss_dssp HHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEE---TTCCCEEESCEECCC--------------CCC------
T ss_pred hHHHhcccCCCccccCHHHHHHHHHHHHhhccccccccc---ccccccccHHHHHhc--------------Cccc-----
Confidence 887754 78999999999999999764 21 0000 000111245666665 0000
Q ss_pred cccccccccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCCCCcccceeecCC
Q 036257 246 DLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGS 325 (418)
Q Consensus 246 ~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~~~K~~~~v~fp~ 325 (418)
. +...+++.+++..+-.+ | .+|.++|.||+||+.|| +...|+.++|.||.
T Consensus 142 ~-----~~~e~~~qL~e~nfl~~---g-------------------ikisrLP~yLtVq~vRF---gKkaKIlrkV~fp~ 191 (374)
T 2vhf_A 142 K-----VGVPTIQQLLEWSFINS---N-------------------LKFAEAPSCLIIQMPRF---GKDFKLFKKIFPSL 191 (374)
T ss_dssp ------CCCCBHHHHHHHHHHHH---T-------------------EEESSCCSEEEEECCCC---SSSSSCCCCCBCCS
T ss_pred c-----cCCcHHHHhhhHHHHHc---C-------------------CeeecCCcceEEeeecc---CccccccCCCCCcc
Confidence 0 00234444433222111 1 12999999999999999 45689999999999
Q ss_pred CCCCCCCcCCCC--------------------------------------------------------------------
Q 036257 326 TLDMKPFVSGSY-------------------------------------------------------------------- 337 (418)
Q Consensus 326 ~Ldl~~~~~~~~-------------------------------------------------------------------- 337 (418)
+||+.+++.++.
T Consensus 192 eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 271 (374)
T 2vhf_A 192 ELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGC 271 (374)
T ss_dssp EECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTCCCEECCC-------------
T ss_pred hhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhcccccccccCccccccccccCC
Confidence 999988764210
Q ss_pred CCCceEEEEEEEEeeecCCCCCceEEEEEC--CCCCEEEEeCC
Q 036257 338 EGDLKYTLYGVLVHHGWSTHSGHYYCFVRT--SSGMWYSLDDN 378 (418)
Q Consensus 338 ~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~--~~~~W~~~dD~ 378 (418)
.....|+|.|||+ +++|||+||||. .+++|+.||-.
T Consensus 272 ~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDsm 309 (374)
T 2vhf_A 272 IPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDSM 309 (374)
T ss_dssp ---CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEETT
T ss_pred CCceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEech
Confidence 0015799999998 778999999997 57899999943
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=97.94 E-value=7.1e-05 Score=64.29 Aligned_cols=180 Identities=17% Similarity=0.192 Sum_probs=102.5
Q ss_pred CccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhhhccCC
Q 036257 98 GLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFR 177 (418)
Q Consensus 98 GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~~~~f~ 177 (418)
=|.=.-|+||+||++-+|=+.... +..+|.... .=+|..|+..+-.+. ...
T Consensus 15 vLkq~dNNCwVNaa~l~LQ~~~~~---------------------------~~~aw~~f~-~Gd~~~fV~~~Ya~~-~~~ 65 (211)
T 3mp2_A 15 ILKQGDNNCWINACCYQLQAFDFF---------------------------NNEAWEKFK-KGDVMDFVNLCYAAT-TLA 65 (211)
T ss_dssp EECCCTTCHHHHHHHHHHTTCTTC---------------------------CCHHHHHHT-TTCCHHHHHHHHHHH-TCC
T ss_pred EEEccCCCcHHHHHHHHHHhcChh---------------------------HHHHHHHHh-CCChHHHHHHHHHHc-CCC
Confidence 344456999999999988555443 112232211 135777877776555 456
Q ss_pred CCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCccccccccccccccccccccH
Q 036257 178 NSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSV 257 (418)
Q Consensus 178 ~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~~l 257 (418)
.|+-.||+++|..|++.+.. ..+.....|. |+.... .+...-..+..
T Consensus 66 ~G~~gDa~~~L~~Ll~~~~~-------------------------a~~v~~~~C~-Cg~~~~---~~~G~v~~~~~---- 112 (211)
T 3mp2_A 66 RGHSGDAEYLLELMLNDYST-------------------------AKIVLAAKCG-CGEKEI---VLERAVFKLTP---- 112 (211)
T ss_dssp TTSCCCHHHHHHHHHTTCCC-------------------------EEEEEEEEET-TEEEEE---EEEESEEESCC----
T ss_pred CCCCcCHHHHHHHHHHhhcc-------------------------ceEEEEEEEc-CCCceE---EEeeeEEEEEe----
Confidence 88999999999999844322 2345567786 876322 22222222211
Q ss_pred HHHHhhccccccccCCCccc-ccccccccceeeEEEEEeeCCceEEEEEeeeecCCCCCcccceeecCCCCCCCCCcCCC
Q 036257 258 LKALNNFTAAELLDGGEKEY-HCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFVSGS 336 (418)
Q Consensus 258 ~~~L~~~~~~e~~~~~~~~~-~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~~~K~~~~v~fp~~Ldl~~~~~~~ 336 (418)
+. ... +| .|..|++- +..++.+.+-.++|-=. + .|..++....+-
T Consensus 113 -------~~-~~~-----~~g~C~~c~~~----~~~~v~~v~Gt~i~~~~---------~------~~~~v~~~~~~v-- 158 (211)
T 3mp2_A 113 -------LK-ESF-----NYGVCGDCMQV----NTCRFLSVEGSGVFVHD---------I------LSKQTPEAMFVV-- 158 (211)
T ss_dssp -------BS-SCE-----EEEECTTTCCE----EEEEEEEEEEEEEEEEE---------E------ECSCCCGGGBSS--
T ss_pred -------ee-cCC-----CceECCCCCce----eEEEEEEeeeeEEEEcC---------C------CCccccccccee--
Confidence 00 101 14 79999773 33345555544444310 0 122222211111
Q ss_pred CCCCceEEEEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCceeeec
Q 036257 337 YEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVN 384 (418)
Q Consensus 337 ~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~v~ 384 (418)
.. .+.++..| +.++|||+.+... .+ +.+|-..+.+++
T Consensus 159 --~~-----~~~~vF~G-~~~~GHY~~~~~~-~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 159 --KP-----VMHAVYTG-TTQNGHYMVDDIE-HG--YCVDGMGIKPLK 195 (211)
T ss_dssp --CC-----SEEEEEES-CTTTCEEEEEETT-TT--EEEETTEEECCC
T ss_pred --ec-----eeEEEEEc-CCCCceEEEEecc-cc--eEEeCCceeEcc
Confidence 01 24567799 8999999999755 33 899999998876
No 13
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=97.64 E-value=0.0012 Score=60.37 Aligned_cols=194 Identities=17% Similarity=0.219 Sum_probs=103.6
Q ss_pred CCCCccccCChhhHHHHHHHHhCCHH-HHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhhh
Q 036257 95 IGAGLENLGNTCFLNSVLQCLTYTEP-LAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCIS 173 (418)
Q Consensus 95 ~~~GL~N~gNtCYlNSvLQ~L~~~~~-fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~~ 173 (418)
+.+=|.=.-|+||+||++-+|=+..+ |+. ..+.++...|. . =+|..|+..+-.+.
T Consensus 101 G~~vLkq~dNNCwVNaa~l~LQ~~~~~F~~----------------~~l~~aw~~f~-----~---Gd~~~FVa~~Ya~~ 156 (315)
T 2fe8_A 101 GLTSIKWADNNCYLSSVLLALQQLEVKFNA----------------PALQEAYYRAR-----A---GDAANFCALILAYS 156 (315)
T ss_dssp TEECCCCCTTTHHHHHHHHHHHTSCCCBSS----------------HHHHHHHHHHH-----H---TCCHHHHHHHHHHT
T ss_pred CEEEEeecCCccHHHHHHHHHHhcCCccCC----------------HHHHHHHHHHh-----C---CChHHHHHHHHHhc
Confidence 33445555699999999988843322 111 12333333332 1 25778888776555
Q ss_pred ccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCccccccccccccccc-c
Q 036257 174 RNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEI-A 252 (418)
Q Consensus 174 ~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i-~ 252 (418)
. ...|+-.||+++|..|++... ++. ........|..|+.......-. ...+ +
T Consensus 157 ~-~~~G~~gDa~~~L~~Ll~~~~--------------------v~t---a~~~~~~~C~~Cg~~~~~~~G~---~a~~~~ 209 (315)
T 2fe8_A 157 N-KTVGELGDVRETMTHLLQHAN--------------------LES---AKRVLNVVCKHCGQKTTTLTGV---EAVMYM 209 (315)
T ss_dssp T-CCTTSCCCHHHHHHHHHTTBC--------------------CTT---CEEEEEEEETTTEEEEEEEETH---HHHEEE
T ss_pred C-CCCCCCccHHHHHHHHHhcCC--------------------eee---EEEEEeeecCCCCCCeEEEecc---EEEEEe
Confidence 4 458899999999999955431 111 1223346898898543322211 0000 0
Q ss_pred ccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCCCCcccceeecCCCCCCCCC
Q 036257 253 KADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPF 332 (418)
Q Consensus 253 ~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~~~K~~~~v~fp~~Ldl~~~ 332 (418)
...++.+.- .+. -.|..|+... ..+..-.+.|-+|+-+- . ..+.++.
T Consensus 210 ~~~~~~~~~---------~G~---~~~c~Cg~~~--~~~v~~~~g~~i~~s~~-p-----------~~~~~~~------- 256 (315)
T 2fe8_A 210 GTLSYDNLK---------TGV---SIPCVCGRDA--TQYLVQQESSFVMMSAP-P-----------AEYKLQQ------- 256 (315)
T ss_dssp SCSCHHHHH---------HCE---EEECTTSSEE--EEEEEEEESSEEEEEEE-E-----------EEEEEET-------
T ss_pred ccCchHHhh---------cCC---cccccCCCEe--EEEEEEeecCEEEEeCC-C-----------CcccccC-------
Confidence 111222111 110 1377787742 22333344555554332 1 1111110
Q ss_pred cCCCCCCCceEEEEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCceeeecc
Q 036257 333 VSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNE 385 (418)
Q Consensus 333 ~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~v~~ 385 (418)
+ .+ ++..+..| +.++|||+.+... ++. +.+|-..+.+++.
T Consensus 257 ------~--~~--~~a~vF~G-~~~~GHYt~~~~~-~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 257 ------G--TF--LCANEYTG-NYQCGHYTHITAK-ETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp ------T--SC--SEEEEEES-CGGGCEEEEEEES-SSE-EEEETTEEEEESE
T ss_pred ------C--ce--EEEEEEEC-CCCccceEEEecC-Cce-eEEeCCcceeccc
Confidence 1 11 44556689 7889999998875 233 8999999998864
No 14
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=89.03 E-value=0.17 Score=39.86 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=20.9
Q ss_pred ccCCCCccccCChhhHHHHHHHHhC
Q 036257 93 RRIGAGLENLGNTCFLNSVLQCLTY 117 (418)
Q Consensus 93 ~~~~~GL~N~gNtCYlNSvLQ~L~~ 117 (418)
++.+.|+.|.-++||+|++||+...
T Consensus 10 kk~fys~pN~hdncWLNtilQLfry 34 (167)
T 1qmy_A 10 KKTFYSRPNNHDNAWLNAILQLFRY 34 (167)
T ss_dssp EEECCCCCCSSSCHHHHHHHHHHHH
T ss_pred ccccccCCCCCcchHHHHHHHHHHH
Confidence 3445899999999999999998743
No 15
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=56.47 E-value=26 Score=27.78 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=27.0
Q ss_pred EEEEEEEeCCCCCccccccccccccccccccccHHHHHhhccccccccCCCcccccccccccc
Q 036257 224 RLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKV 286 (418)
Q Consensus 224 ~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~ 286 (418)
......+|..||+.....+....|.-.... ...+.++.+.. .+.|+.||...
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~--------~~h~~p~~~~~---~~~CP~Cgs~~ 117 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKEVKDKFDERIKE--------DIHFIPEVVHA---FLACPKCGSHD 117 (139)
T ss_dssp EECCEEEETTTCCEEEGGGCTTCCSCCCGG--------GCCCCGGGCGG---GCSCSSSSCCC
T ss_pred ecCCcEECCCCCCEEecccccccccccccc--------ccccccccccc---CCcCccccCCc
Confidence 344567999999976544422222211111 11122333322 26899999863
No 16
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=44.56 E-value=6.4 Score=21.24 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=11.7
Q ss_pred EEEEECCCCCEEEEeC
Q 036257 362 YCFVRTSSGMWYSLDD 377 (418)
Q Consensus 362 ~a~vr~~~~~W~~~dD 377 (418)
.+|||. +|.|+..++
T Consensus 11 ~~Yvr~-dg~WV~l~t 25 (27)
T 2ww6_A 11 QAYVRK-FGEWVLLST 25 (27)
T ss_dssp CEEEEE-TTEEEEGGG
T ss_pred ceeEEE-cCeEEEccc
Confidence 368888 899998765
No 17
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=38.13 E-value=24 Score=27.81 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=25.9
Q ss_pred EEEEEeeecCCCCCceEEEEECCCCCEEEEeCCceeeecc
Q 036257 346 YGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNE 385 (418)
Q Consensus 346 ~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~v~~ 385 (418)
.|-|.-.| -+|-+-+.-.++| ||.+||+...+.++
T Consensus 110 hAgIflkg----~eHAVFa~~TS~G-WyaiDDe~fypwtP 144 (167)
T 1qmy_A 110 HAGIFLKG----QEHAVFACVTSNG-WYAIDDEDFYPWTP 144 (167)
T ss_dssp EEEEEEET----TTEEEEEECCTTS-SEEEETTEEEECCC
T ss_pred hhheeecC----CCceEEEEEccCc-eEEecccccccCCC
Confidence 44444445 3898888877555 99999999998765
No 18
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=34.92 E-value=25 Score=29.47 Aligned_cols=51 Identities=18% Similarity=0.407 Sum_probs=35.7
Q ss_pred EEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCceeee--ccccc------CCCCcEEEEEEEe
Q 036257 345 LYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQV--NERSV------LEQKAYMLFYVRD 401 (418)
Q Consensus 345 L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~v--~~~~v------~~~~aYil~Y~r~ 401 (418)
..|+|++.. -|++|..|- +|+||.+|-..-.+. +...+ +..+.|-+|-++-
T Consensus 110 ~~~FI~N~~-----~HWfaiRki-gg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~siFvV~g 168 (191)
T 3o65_A 110 ERSFICNYK-----QHWFTIRKF-GKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKG 168 (191)
T ss_dssp CCEEEEEES-----SCEEEEEEE-TTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEEEEEES
T ss_pred hhhhhhccc-----cceeeEEec-CCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEEEEEcC
Confidence 357888875 799998887 789999997654332 22111 1368899888874
No 19
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=33.38 E-value=1.1e+02 Score=22.91 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=41.7
Q ss_pred eEEEEEEEEeeecC--C-------CCCceEEEEECCCCCEEEEeCCceeeecccccCCCCcEEEEEEEec
Q 036257 342 KYTLYGVLVHHGWS--T-------HSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDR 402 (418)
Q Consensus 342 ~Y~L~avI~H~G~~--~-------~~GHY~a~vr~~~~~W~~~dD~~V~~v~~~~v~~~~aYil~Y~r~~ 402 (418)
..++...|.|-=.+ . --.||+..+.- .+||..|..+......+.+||+-|+-+-.
T Consensus 19 ~~~vk~~I~HPMetGl~~d~~g~~IPa~~I~~v~~------~~ng~~v~~~~~~~~iS~NP~~~F~~~~~ 82 (108)
T 2oxg_Z 19 TVTVKALISHKMESGQRKDADGKLIPRSIINRFTC------ELNGVNVVDVAIDPAVSTNPYFEFDAKVD 82 (108)
T ss_dssp EEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEEE------EETTEEEEEEEECTTBCSSCEEEEEEEEC
T ss_pred CEEEEEEeECCCccccccCcCCCccchHheEEEEE------EECCEEEEEEEeCCccccCCeEEEEEecC
Confidence 56677788883211 1 12799988864 37999999999999999999999998754
No 20
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=31.97 E-value=1.3e+02 Score=22.38 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=41.8
Q ss_pred eEEEEEEEEeeecC---------CCCCceEEEEECCCCCEEEEeCCceeeecccccCCCCcEEEEEEEec
Q 036257 342 KYTLYGVLVHHGWS---------THSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDR 402 (418)
Q Consensus 342 ~Y~L~avI~H~G~~---------~~~GHY~a~vr~~~~~W~~~dD~~V~~v~~~~v~~~~aYil~Y~r~~ 402 (418)
..++...|.|-=.+ .--.||+..+.- .+||..|..+......+.+||+-|+-+-.
T Consensus 18 ~~~vk~~I~HPmetGl~~D~~g~~iPa~~I~~v~~------~~ng~~v~~~~~~~~iS~nP~~~F~~~~~ 81 (107)
T 1v8h_A 18 EFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVEV------YFEGEKVAEARPGPSTSANPLYAFKFKAE 81 (107)
T ss_dssp EEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEEE------EETTEEEEEECCCSSCCSSCEEEEEEECC
T ss_pred cEEEEEEeECCCCccccccccCCcCchHheEEEEE------EECCEEEEEEEeCCccccCCeEEEEEecC
Confidence 56677788884222 112799988864 37999999999999999999999998753
No 21
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.82 E-value=16 Score=18.53 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=8.6
Q ss_pred ccccccccccc
Q 036257 275 KEYHCQRCKQK 285 (418)
Q Consensus 275 ~~~~C~~C~~~ 285 (418)
++|.|+.|++.
T Consensus 2 k~~~C~~C~k~ 12 (27)
T 2kvh_A 2 KPFSCSLCPQR 12 (27)
T ss_dssp CCEECSSSSCE
T ss_pred cCccCCCcChh
Confidence 45899999874
No 22
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=28.98 E-value=15 Score=23.95 Aligned_cols=11 Identities=18% Similarity=0.806 Sum_probs=8.4
Q ss_pred EEEEeCCCCCc
Q 036257 227 SQVKCTQCSYC 237 (418)
Q Consensus 227 ~~~~C~~C~~~ 237 (418)
..+.|+.|++.
T Consensus 14 ~~~~Cp~Cg~~ 24 (57)
T 1qyp_A 14 TKITCPKCGND 24 (57)
T ss_dssp EECCCTTTCCS
T ss_pred eEeECCCCCCC
Confidence 35789999983
No 23
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=27.94 E-value=16 Score=21.25 Aligned_cols=13 Identities=15% Similarity=0.496 Sum_probs=10.6
Q ss_pred CCccccccccccc
Q 036257 273 GEKEYHCQRCKQK 285 (418)
Q Consensus 273 ~~~~~~C~~C~~~ 285 (418)
++++|.|+.|++.
T Consensus 5 gekp~~C~~CgK~ 17 (36)
T 1fv5_A 5 KPARFMCLPCGIA 17 (36)
T ss_dssp SCCCCEETTTTEE
T ss_pred CccCeECCCCCCc
Confidence 4678999999874
No 24
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.48 E-value=15 Score=18.73 Aligned_cols=11 Identities=27% Similarity=0.893 Sum_probs=8.4
Q ss_pred ccccccccccc
Q 036257 275 KEYHCQRCKQK 285 (418)
Q Consensus 275 ~~~~C~~C~~~ 285 (418)
++|.|+.|++.
T Consensus 2 k~~~C~~C~k~ 12 (27)
T 2kvg_A 2 APYRCPLCRAG 12 (27)
T ss_dssp CTEEETTTTEE
T ss_pred cCcCCCCCCcc
Confidence 45899999863
No 25
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.79 E-value=20 Score=20.13 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=10.3
Q ss_pred CCccccccccccc
Q 036257 273 GEKEYHCQRCKQK 285 (418)
Q Consensus 273 ~~~~~~C~~C~~~ 285 (418)
++++|.|+.|++.
T Consensus 6 ~~k~~~C~~C~k~ 18 (37)
T 2elm_A 6 SGHLYYCSQCHYS 18 (37)
T ss_dssp SSCEEECSSSSCE
T ss_pred CCcCeECCCCCcc
Confidence 4567999999874
No 26
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=26.68 E-value=22 Score=19.73 Aligned_cols=13 Identities=31% Similarity=0.961 Sum_probs=10.2
Q ss_pred CCccccccccccc
Q 036257 273 GEKEYHCQRCKQK 285 (418)
Q Consensus 273 ~~~~~~C~~C~~~ 285 (418)
++++|.|+.|++.
T Consensus 8 ~~k~~~C~~C~k~ 20 (37)
T 1p7a_A 8 GIKPFQCPDCDRS 20 (37)
T ss_dssp CSSSBCCTTTCCC
T ss_pred CCCCccCCCCCcc
Confidence 4567999999874
No 27
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.81 E-value=20 Score=18.16 Aligned_cols=11 Identities=27% Similarity=1.032 Sum_probs=8.4
Q ss_pred ccccccccccc
Q 036257 275 KEYHCQRCKQK 285 (418)
Q Consensus 275 ~~~~C~~C~~~ 285 (418)
++|.|+.|++.
T Consensus 2 k~~~C~~C~k~ 12 (28)
T 2kvf_A 2 RPYSCSVCGKR 12 (28)
T ss_dssp CSEECSSSCCE
T ss_pred cCccCCCCCcc
Confidence 35889999873
No 28
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.92 E-value=25 Score=17.94 Aligned_cols=11 Identities=36% Similarity=1.038 Sum_probs=8.4
Q ss_pred ccccccccccc
Q 036257 275 KEYHCQRCKQK 285 (418)
Q Consensus 275 ~~~~C~~C~~~ 285 (418)
++|.|+.|++.
T Consensus 2 k~~~C~~C~~~ 12 (30)
T 2m0d_A 2 KPYQCDYCGRS 12 (30)
T ss_dssp CCEECTTTCCE
T ss_pred cCccCCCCCcc
Confidence 45889999873
No 29
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.86 E-value=28 Score=18.78 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=9.5
Q ss_pred Cccccccccccc
Q 036257 274 EKEYHCQRCKQK 285 (418)
Q Consensus 274 ~~~~~C~~C~~~ 285 (418)
+++|.|+.|++.
T Consensus 5 ~k~~~C~~C~k~ 16 (35)
T 2elx_A 5 SSGYVCALCLKK 16 (35)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCeECCCCcch
Confidence 456999999874
No 30
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.10 E-value=20 Score=17.90 Aligned_cols=10 Identities=40% Similarity=1.258 Sum_probs=7.9
Q ss_pred cccccccccc
Q 036257 276 EYHCQRCKQK 285 (418)
Q Consensus 276 ~~~C~~C~~~ 285 (418)
+|.|+.|++.
T Consensus 2 p~~C~~C~k~ 11 (26)
T 2lvu_A 2 PYVCERCGKR 11 (26)
Confidence 4889999874
No 31
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=21.53 E-value=29 Score=18.81 Aligned_cols=12 Identities=17% Similarity=0.730 Sum_probs=9.5
Q ss_pred Cccccccccccc
Q 036257 274 EKEYHCQRCKQK 285 (418)
Q Consensus 274 ~~~~~C~~C~~~ 285 (418)
+++|.|+.|++.
T Consensus 5 ~k~~~C~~C~k~ 16 (35)
T 1srk_A 5 KRPFVCRICLSA 16 (35)
T ss_dssp CSCEECSSSCCE
T ss_pred CcCeeCCCCCcc
Confidence 456999999874
No 32
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=20.88 E-value=41 Score=19.04 Aligned_cols=13 Identities=8% Similarity=-0.013 Sum_probs=10.3
Q ss_pred cHHHHHHHHHHHH
Q 036257 183 DAHEYMVNLLESM 195 (418)
Q Consensus 183 Da~Efl~~ll~~L 195 (418)
=|+||+.||++.-
T Consensus 10 aakdFv~WL~ngk 22 (31)
T 3c5t_B 10 AVRLFIEWLKNGG 22 (31)
T ss_dssp HHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCC
Confidence 4789999998764
No 33
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.22 E-value=32 Score=18.74 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=9.8
Q ss_pred CCccccccccccc
Q 036257 273 GEKEYHCQRCKQK 285 (418)
Q Consensus 273 ~~~~~~C~~C~~~ 285 (418)
++++|.|+.|++.
T Consensus 6 ~~k~~~C~~C~k~ 18 (36)
T 2elt_A 6 SGKPYKCPQCSYA 18 (36)
T ss_dssp CCCSEECSSSSCE
T ss_pred CCCCCCCCCCCcc
Confidence 3456999999873
Done!