BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036258
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 131/295 (44%), Gaps = 65/295 (22%)
Query: 72 PNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLR 131
PN N +L++L L++NGF G+IP +LS C++L L L N +G +P ++G+LSKLR
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 132 SLVL------GHKAH---------------NSLHGHLPSTLSVSLPNLKWLALGMNKLR- 169
L L G N L G +PS LS + NL W++L N+L
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTG 504
Query: 170 TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLT--------TRSST 221
IP I L +L+L NSFSG +P G+ R L LDL N +S
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 222 TEWSFLSSLTNCIYLK----------------VLGLHSNQLS----------------GI 249
+F++ +Y+K G+ S QL+ G
Sbjct: 565 IAANFIAG-KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 250 LPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVG 304
P N + +Y+ L G IP+EIG++ L L L ND++G+IP VG
Sbjct: 624 TSPTFDNNGSMMFLDMSYNM-LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 118/256 (46%), Gaps = 43/256 (16%)
Query: 78 RLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGH 137
R +LE L + SN F IP L C+ LQHL + NK +G I ++L+ L +
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI-- 254
Query: 138 KAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASE-LTLLELGKNSFSGLV 195
+ N G +P + L +L++L+L NK IP+ ++ A + LT L+L N F G V
Sbjct: 255 -SSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Query: 196 PNTFG-------------------------NLRFLSLLDLGNNYLTTRSSTTEWSFLSSL 230
P FG +R L +LDL N + SL
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE-------LPESL 363
Query: 231 TN-CIYLKVLGLHSNQLSG-ILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDL 288
TN L L L SN SG ILP L N ++LQ+ Y + G IP + N + L+ L
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423
Query: 289 RLQDNDLNGTIPTTVG 304
L N L+GTIP+++G
Sbjct: 424 HLSFNYLSGTIPSSLG 439
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 123/278 (44%), Gaps = 40/278 (14%)
Query: 79 LPSLEQLVLRSNGFFGQIPLSLS-KCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGH 137
L SL+ L L N F G+IP LS C L L L N F G +P G+ S L SL
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA--- 324
Query: 138 KAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITN-ASELTLLELGKNSFSG-L 194
+ N+ G LP + + LK L L N+ +P S+TN ++ L L+L N+FSG +
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Query: 195 VPNTFGNLR-FLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPL 253
+PN N + L L L NN T + T L+NC L L L N LSG +P
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPT-------LSNCSELVSLHLSFNYLSGTIPSS 437
Query: 254 IGNFSDSLQQFYAYDCELKGSIPQEI-------------GNLNGLID-----------LR 289
+G+ S L+ + L+G IPQE+ +L G I +
Sbjct: 438 LGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
Query: 290 LQDNDLNGTIPTTVGRXXXXXXXXXXXXXXXXSIPSDL 327
L +N L G IP +GR +IP++L
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 107/267 (40%), Gaps = 59/267 (22%)
Query: 81 SLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAH 140
+LE L+L N G+IP LS CT L + L +N+ TG +P+ IG L L L L ++
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL---SN 523
Query: 141 NSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNAS-------------------- 179
NS G++P+ L +L WL L N TIP ++ S
Sbjct: 524 NSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582
Query: 180 -------ELTLLE-------------------LGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
LLE + + G TF N + LD+ N
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Query: 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKG 273
L+ + + YL +L L N +SG +P +G+ L +L G
Sbjct: 643 MLSGY-------IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR-GLNILDLSSNKLDG 694
Query: 274 SIPQEIGNLNGLIDLRLQDNDLNGTIP 300
IPQ + L L ++ L +N+L+G IP
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 87/220 (39%), Gaps = 52/220 (23%)
Query: 78 RLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK--LRSLVL 135
RL +L L L +N F G IP L C L L L N F G +P + S + +
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571
Query: 136 G---------------HKAHNSLH--------------------------GHLPSTLSVS 154
G H A N L GH T +
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 155 LPNLKWLALGMNKLRT-IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
++ +L + N L IP I + L +L LG N SG +P+ G+LR L++LDL +N
Sbjct: 632 -GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPL 253
L R +S+LT L + L +N LSG +P +
Sbjct: 691 KLDGRIPQA----MSALT---MLTEIDLSNNNLSGPIPEM 723
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 43 YSVLTKNCFYNISSLKMIRXXXXXXXXXXPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSK 102
Y T F N S+ + P ++ +P L L L N G IP +
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGD 678
Query: 103 CTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLP 148
L L L NK GR+P+ + L+ L + L ++N+L G +P
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL---SNNNLSGPIP 721
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 74 DLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPE 122
D L L L L SN G+IP ++S T L + L +N +G +PE
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 131/295 (44%), Gaps = 65/295 (22%)
Query: 72 PNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLR 131
PN N +L++L L++NGF G+IP +LS C++L L L N +G +P ++G+LSKLR
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 132 SLVL------GHKAH---------------NSLHGHLPSTLSVSLPNLKWLALGMNKLR- 169
L L G N L G +PS LS + NL W++L N+L
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTG 501
Query: 170 TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLT--------TRSST 221
IP I L +L+L NSFSG +P G+ R L LDL N +S
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 222 TEWSFLSSLTNCIYLK----------------VLGLHSNQLS----------------GI 249
+F++ +Y+K G+ S QL+ G
Sbjct: 562 IAANFIAG-KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 620
Query: 250 LPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVG 304
P N + +Y+ L G IP+EIG++ L L L ND++G+IP VG
Sbjct: 621 TSPTFDNNGSMMFLDMSYNM-LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 674
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 118/256 (46%), Gaps = 43/256 (16%)
Query: 78 RLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGH 137
R +LE L + SN F IP L C+ LQHL + NK +G I ++L+ L +
Sbjct: 195 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI-- 251
Query: 138 KAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASE-LTLLELGKNSFSGLV 195
+ N G +P + L +L++L+L NK IP+ ++ A + LT L+L N F G V
Sbjct: 252 -SSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 307
Query: 196 PNTFG-------------------------NLRFLSLLDLGNNYLTTRSSTTEWSFLSSL 230
P FG +R L +LDL N + SL
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE-------LPESL 360
Query: 231 TN-CIYLKVLGLHSNQLSG-ILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDL 288
TN L L L SN SG ILP L N ++LQ+ Y + G IP + N + L+ L
Sbjct: 361 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 420
Query: 289 RLQDNDLNGTIPTTVG 304
L N L+GTIP+++G
Sbjct: 421 HLSFNYLSGTIPSSLG 436
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 123/278 (44%), Gaps = 40/278 (14%)
Query: 79 LPSLEQLVLRSNGFFGQIPLSLS-KCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGH 137
L SL+ L L N F G+IP LS C L L L N F G +P G+ S L SL
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA--- 321
Query: 138 KAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITN-ASELTLLELGKNSFSG-L 194
+ N+ G LP + + LK L L N+ +P S+TN ++ L L+L N+FSG +
Sbjct: 322 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Query: 195 VPNTFGNLR-FLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPL 253
+PN N + L L L NN T + T L+NC L L L N LSG +P
Sbjct: 382 LPNLCQNPKNTLQELYLQNNGFTGKIPPT-------LSNCSELVSLHLSFNYLSGTIPSS 434
Query: 254 IGNFSDSLQQFYAYDCELKGSIPQEI-------------GNLNGLID-----------LR 289
+G+ S L+ + L+G IPQE+ +L G I +
Sbjct: 435 LGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 493
Query: 290 LQDNDLNGTIPTTVGRXXXXXXXXXXXXXXXXSIPSDL 327
L +N L G IP +GR +IP++L
Sbjct: 494 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 107/267 (40%), Gaps = 59/267 (22%)
Query: 81 SLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAH 140
+LE L+L N G+IP LS CT L + L +N+ TG +P+ IG L L L L ++
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL---SN 520
Query: 141 NSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNAS-------------------- 179
NS G++P+ L +L WL L N TIP ++ S
Sbjct: 521 NSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 579
Query: 180 -------ELTLLE-------------------LGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
LLE + + G TF N + LD+ N
Sbjct: 580 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 639
Query: 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKG 273
L+ + + YL +L L N +SG +P +G+ L +L G
Sbjct: 640 MLSGY-------IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR-GLNILDLSSNKLDG 691
Query: 274 SIPQEIGNLNGLIDLRLQDNDLNGTIP 300
IPQ + L L ++ L +N+L+G IP
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 87/220 (39%), Gaps = 52/220 (23%)
Query: 78 RLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK--LRSLVL 135
RL +L L L +N F G IP L C L L L N F G +P + S + +
Sbjct: 509 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 568
Query: 136 G---------------HKAHNSLH--------------------------GHLPSTLSVS 154
G H A N L GH T +
Sbjct: 569 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 628
Query: 155 LPNLKWLALGMNKLRT-IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
++ +L + N L IP I + L +L LG N SG +P+ G+LR L++LDL +N
Sbjct: 629 -GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPL 253
L R +S+LT L + L +N LSG +P +
Sbjct: 688 KLDGRIPQA----MSALT---MLTEIDLSNNNLSGPIPEM 720
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 43 YSVLTKNCFYNISSLKMIRXXXXXXXXXXPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSK 102
Y T F N S+ + P ++ +P L L L N G IP +
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGD 675
Query: 103 CTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLP 148
L L L NK GR+P+ + L+ L + L ++N+L G +P
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL---SNNNLSGPIP 718
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 74 DLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPE 122
D L L L L SN G+IP ++S T L + L +N +G +PE
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 18/232 (7%)
Query: 72 PNDLCNRLPSLEQLVLRS-NGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL 130
P+ L N LP L L + N G IP +++K TQL +L++ H +G +P+ LS++
Sbjct: 69 PSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD---FLSQI 124
Query: 131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASEL-TLLELGK 188
++LV ++N+L G LP ++S SLPNL + N++ IP+S + S+L T + + +
Sbjct: 125 KTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 189 NSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSG 248
N +G +P TF NL L+ +DL N L +S S ++ + + L N L+
Sbjct: 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT-------QKIHLAKNSLAF 235
Query: 249 ILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIP 300
L + S +L + + G++PQ + L L L + N+L G IP
Sbjct: 236 DLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 224 WSFLSSLTNCIYLKVLGLHS-NQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNL 282
+ SSL N YL L + N L G +PP I + L Y + G+IP + +
Sbjct: 66 YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQI 124
Query: 283 NGLIDLRLQDNDLNGTIPTTV 303
L+ L N L+GT+P ++
Sbjct: 125 KTLVTLDFSYNALSGTLPPSI 145
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 81 SLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL 130
+L L LR+N +G +P L++ L L + N G +P+ GNL +
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF 293
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 43 YSVLTKNCFYNISSLKMIRXXXX-----XXXXXXPNDLCNRLPSLEQLVLRSNGFFGQIP 97
Y L N ++IS+LK + PN + ++L +L++LVL N
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 98 LSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPN 157
K T L +L+L HN+ LP+ G KL +L +N L LP + L
Sbjct: 127 GVFDKLTNLTYLYLYHNQLQS-LPK--GVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQ 182
Query: 158 LKWLALGMNKLRTIPNSI 175
LK L+L N+L+++P+ +
Sbjct: 183 LKQLSLNDNQLKSVPDGV 200
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 147 LPSTLSVSLPNLKWLALGMNKLRTIPNSITNA-SELTLLELGKNSFSGLVPNTFGNLRFL 205
LP+ + L NLK L L N+L+++P+ + + + LT L L N L F L L
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNL 159
Query: 206 SLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGI 249
+ LDL NN L S E F LT LK L L+ NQL +
Sbjct: 160 TRLDLDNNQL---QSLPEGVF-DKLTQ---LKQLSLNDNQLKSV 196
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 12/150 (8%)
Query: 155 LPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214
LPN+++LALG NKL I +++ + LT L L N L F L L L L N
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 215 LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS 274
L + LTN YL L+ NQL LP + + +L + + +L+ S
Sbjct: 121 LQSLPD----GVFDKLTNLTYLY---LYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQ-S 171
Query: 275 IPQEI-GNLNGLIDLRLQDNDLNGTIPTTV 303
+P+ + L L L L DN L ++P V
Sbjct: 172 LPEGVFDKLTQLKQLSLNDNQLK-SVPDGV 200
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 4/141 (2%)
Query: 77 NRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG 136
N LPSL L L N + ++L+ LWL +N + LR L LG
Sbjct: 80 NGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG 139
Query: 137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVP 196
++ L NL++L LGM L+ IPN +T L LEL N + P
Sbjct: 140 ELKRLE---YISEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRP 195
Query: 197 NTFGNLRFLSLLDLGNNYLTT 217
+F L L L L + + T
Sbjct: 196 GSFQGLTSLRKLWLMHAQVAT 216
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 145 GHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLR 203
+P+++ V N ++L L N ++ I ++ + L +L+L KN + F L
Sbjct: 27 AEVPASIPV---NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 204 FLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQ 263
L+ L+L +N LTT T + +LS L+ L L +N + I P N SL++
Sbjct: 84 SLNTLELFDNRLTT-VPTQAFEYLSK------LRELWLRNNPIESI-PSYAFNRVPSLRR 135
Query: 264 FYAYDCELKGSIPQEIGNLNGLIDLR 289
+ + I + GL++LR
Sbjct: 136 LDLGELKRLEYISE--AAFEGLVNLR 159
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 4/141 (2%)
Query: 77 NRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG 136
N LPSL L L N + ++L+ LWL +N + LR L LG
Sbjct: 80 NGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG 139
Query: 137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVP 196
++ L NL++L LGM L+ IPN +T L LEL N + P
Sbjct: 140 ELKRLE---YISEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRP 195
Query: 197 NTFGNLRFLSLLDLGNNYLTT 217
+F L L L L + + T
Sbjct: 196 GSFQGLTSLRKLWLMHAQVAT 216
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 145 GHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLR 203
+P+++ V N ++L L N ++ I ++ + L +L+L KN + F L
Sbjct: 27 AEVPASIPV---NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 204 FLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQ 263
L+ L+L +N LTT T + +LS L+ L L +N + I P N SL++
Sbjct: 84 SLNTLELFDNRLTT-VPTQAFEYLSK------LRELWLRNNPIESI-PSYAFNRVPSLRR 135
Query: 264 FYAYDCELKGSIPQEIGNLNGLIDLR 289
+ + I + GL++LR
Sbjct: 136 LDLGELKRLEYISE--AAFEGLVNLR 159
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 7/146 (4%)
Query: 72 PNDLCNRLPSLEQLVLRSNGFFGQIPLSLSK-CTQLQHLWLEHNKFTGRLPENIGNLSKL 130
P+ +RL L L L N +P + K L+ LW+ NK LP IG +L
Sbjct: 53 PSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQA-LP--IGVFDQL 108
Query: 131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNA-SELTLLELGKN 189
+L N L LP + SL L +L+LG N+L+++P + + + L L L N
Sbjct: 109 VNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167
Query: 190 SFSGLVPNTFGNLRFLSLLDLGNNYL 215
+ F L L L L NN L
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 60/150 (40%), Gaps = 9/150 (6%)
Query: 147 LPSTLSVSLPNLKWLALGMNKLRTIPNSI-TNASELTLLELGKNSFSGLVPNTFGNLRFL 205
LPS L L+ L L NKL+T+P I L L + N L F L L
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111
Query: 206 SLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFY 265
+ L L N L + SLT Y L L N+L LP + + SL++
Sbjct: 112 AELRLDRNQLKSLPP----RVFDSLTKLTY---LSLGYNELQS-LPKGVFDKLTSLKELR 163
Query: 266 AYDCELKGSIPQEIGNLNGLIDLRLQDNDL 295
Y+ +LK L L L+L +N L
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 147 LPSTLSVSLPNLKWLALGMNKLRTIPNSITNA-SELTLLELGKNSFSGLVPNTFGNLRFL 205
LP+ + L NLK L L N+L+++P+ + + + LT L L N L F L L
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159
Query: 206 SLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFY 265
+ LDL N L S E F LT LK L L+ NQL + P + + SLQ +
Sbjct: 160 TELDLSYNQL---QSLPEGVF-DKLTQ---LKDLRLYQNQLKSV-PDGVFDRLTSLQYIW 211
Query: 266 AYD 268
+D
Sbjct: 212 LHD 214
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 12/150 (8%)
Query: 155 LPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214
LPN+++LALG NKL I +++ + LT L L N L F L L L L N
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 215 LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS 274
L + LTN Y L L NQL + + ++ + +Y+ +L+ S
Sbjct: 121 LQSLPD----GVFDKLTNLTY---LNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQ-S 171
Query: 275 IPQEI-GNLNGLIDLRLQDNDLNGTIPTTV 303
+P+ + L L DLRL N L ++P V
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLK-SVPDGV 200
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
++L+ LWL +N + LR L LG S ++ L NL++L L
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS---YISEGAFEGLSNLRYLNL 192
Query: 164 GMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLL 208
M LR IPN +T +L L+L N S + P +F L L L
Sbjct: 193 AMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 66/162 (40%), Gaps = 26/162 (16%)
Query: 155 LPNLKWLALGMNKLRTIPN-SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
L NL L L N+L TIPN + S+L L L N + F + L LDLG
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE- 169
Query: 214 YLTTRSSTTEWSF------------------LSSLTNCIYLKVLGLHSNQLSGILPPLIG 255
L S +E +F + +LT I L L L N LS I P G
Sbjct: 170 -LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP---G 225
Query: 256 NFSD--SLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDL 295
+F LQ+ + +++ NL L+++ L N+L
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 147 LPSTLSVSLPNLKWLALGMNKLRTIPNSITNA-SELTLLELGKNSFSGLVPNTFGNLRFL 205
LP+ + L +L L LG NKL+++PN + N + LT L L N L F L L
Sbjct: 43 LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102
Query: 206 SLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFY 265
L L N L + LT LK L L+ NQL + P + + SLQ +
Sbjct: 103 KELALNTNQLQSLPD----GVFDKLTQ---LKDLRLYQNQLKSV-PDGVFDRLTSLQYIW 154
Query: 266 AYD 268
+D
Sbjct: 155 LHD 157
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 26/187 (13%)
Query: 78 RLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGH 137
+L +LE L+ +N PL + T L L L N+ ++IG L+ L +L
Sbjct: 193 KLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 245
Query: 138 KAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPN 197
A+N + P + L L L LG N++ I + + + LT LEL +N + P
Sbjct: 246 LANNQISNLAPLS---GLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP- 300
Query: 198 TFGNLRFLSLLDLGNNYLTTRS-------------STTEWSFLSSLTNCIYLKVLGLHSN 244
NL+ L+ L L N ++ S S + S +SSL N + L N
Sbjct: 301 -ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHN 359
Query: 245 QLSGILP 251
Q+S + P
Sbjct: 360 QISDLTP 366
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 26/187 (13%)
Query: 78 RLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGH 137
+L +LE L+ +N PL + T L L L N+ ++IG L+ L +L
Sbjct: 192 KLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 244
Query: 138 KAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPN 197
A+N + P + L L L LG N++ I + + + LT LEL +N + P
Sbjct: 245 LANNQISNLAPLS---GLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP- 299
Query: 198 TFGNLRFLSLLDLGNNYLTTRS-------------STTEWSFLSSLTNCIYLKVLGLHSN 244
NL+ L+ L L N ++ S S + S +SSL N + L N
Sbjct: 300 -ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHN 358
Query: 245 QLSGILP 251
Q+S + P
Sbjct: 359 QISDLTP 365
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 181 LTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLG 240
L LEL +N +G+ PN F + L LG N + S+ FL LK L
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM---FLG----LHQLKTLN 108
Query: 241 LHSNQLSGILP 251
L+ NQ+S ++P
Sbjct: 109 LYDNQISCVMP 119
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 155 LPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
LP+L L L N+L I PN+ AS + L+LG+N + F L L L+L +N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 214 YLT 216
++
Sbjct: 113 QIS 115
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 35/143 (24%)
Query: 157 NLKWLALGMNKLRTIPNSI-TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL 215
NL+ L L N+L+ IP + T S LT L++ +N L+ F +L L L++G+N L
Sbjct: 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 216 TTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSI 275
+Y+ SG+ +SL+Q C L SI
Sbjct: 141 ------------------VYIS-----HRAFSGL---------NSLEQLTLEKCNLT-SI 167
Query: 276 PQE-IGNLNGLIDLRLQDNDLNG 297
P E + +L+GLI LRL+ ++N
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINA 190
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 106 LQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGM 165
L L L+HNK E++ SKL L LG HN + +LS LP L+ L L
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLG---HNQIRMIENGSLSF-LPTLRELHLDN 250
Query: 166 NKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRF 204
NKL +P + + L ++ L N+ + + N F + F
Sbjct: 251 NKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 73/181 (40%), Gaps = 42/181 (23%)
Query: 90 NGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGH---KAHNSLHGH 146
NG F +P L++L LE+N P + LS LR L L K SL H
Sbjct: 265 NGSFSYLP-------SLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASH 317
Query: 147 -----------------------LPSTLS---VSLPNLKWLALG--MNKLRTIPNSITNA 178
+PST S L +LK+L+L L+T+ N +
Sbjct: 318 PNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVS 377
Query: 179 ---SELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIY 235
S L L L KN S + TF L L +LDLG N + + S EW L ++ IY
Sbjct: 378 LAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFE-IY 436
Query: 236 L 236
L
Sbjct: 437 L 437
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT 170
L HN+ P N S+L L G + + L L L P LK L L N+L
Sbjct: 32 LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQIL----PLLKVLNLQHNELSQ 87
Query: 171 IPN-SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTT 217
I + + + LT L+L NS + N F N + L LDL +N L++
Sbjct: 88 ISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 23/152 (15%)
Query: 80 PSLEQLVLRSNGFF-----GQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134
PSL+ L+LR N G+ L+L T + + N F +PE K++ L
Sbjct: 361 PSLQTLILRQNHLASLEKTGETLLTLKNLTNID---ISKNSFHS-MPETCQWPEKMKYLN 416
Query: 135 LGHKAHNSLHGHLPSTLSV-------------SLPNLKWLALGMNKLRTIPNSITNASEL 181
L +S+ G +P TL + +LP LK L + NKL T+P++ + L
Sbjct: 417 LSSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTLPDA-SLLPML 475
Query: 182 TLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
+L++ +N + F L L + L N
Sbjct: 476 LVLKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 147 LPSTLSVSLPNLKWLALGMNKLRTIPNS-ITNASELTLLELGKNSFSGLVPNTFGNLRFL 205
+PS L+ ++ K L L N++ I NS + L L L N + + ++F +L L
Sbjct: 20 IPSGLTEAV---KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 206 SLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLG 240
LDL NYL+ SS S+ L++ +L +LG
Sbjct: 77 EHLDLSYNYLSNLSS----SWFKPLSSLTFLNLLG 107
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 147 LPSTLSVSLPNLKWLALG--MNKLRTIPNSITNA---SELTLLELGKNSFSGLVPNTFGN 201
+ S + L NLK+L+L LRT+ N + S L +L L KN S + + F
Sbjct: 349 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 408
Query: 202 LRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYL---KVLGLHSNQLSGILPPL 253
L L +LDLG N + + EW L ++ IYL K L L N ++P L
Sbjct: 409 LGHLEVLDLGLNEIGQELTGQEWRGLENIFE-IYLSYNKYLQLTRNSF-ALVPSL 461
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 179 SELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKV 238
S L +L L N F + F +L L ++DLG N L T + S N + LK
Sbjct: 541 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA-------SVFNNQVSLKS 593
Query: 239 LGLHSNQLSGILPPLIG----NFSDSLQQFYAYDC 269
L L N ++ + + G N ++ +F +DC
Sbjct: 594 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 628
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 147 LPSTLSVSLPNLKWLALG--MNKLRTIPNSITNA---SELTLLELGKNSFSGLVPNTFGN 201
+ S + L NLK+L+L LRT+ N + S L +L L KN S + + F
Sbjct: 354 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 413
Query: 202 LRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYL---KVLGLHSNQLSGILPPL 253
L L +LDLG N + + EW L ++ IYL K L L N ++P L
Sbjct: 414 LGHLEVLDLGLNEIGQELTGQEWRGLENIFE-IYLSYNKYLQLTRNSF-ALVPSL 466
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 179 SELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKV 238
S L +L L N F + F +L L ++DLG N L T + S N + LK
Sbjct: 546 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA-------SVFNNQVSLKS 598
Query: 239 LGLHSNQLSGILPPLIG----NFSDSLQQFYAYDC 269
L L N ++ + + G N ++ +F +DC
Sbjct: 599 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 633
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 147 LPSTLSVSLPNLKWLALG--MNKLRTIPNSITNA---SELTLLELGKNSFSGLVPNTFGN 201
+ S + L NLK+L+L LRT+ N + S L +L L KN S + + F
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403
Query: 202 LRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYL---KVLGLHSNQLSGILPPL 253
L L +LDLG N + + EW L ++ IYL K L L N ++P L
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFE-IYLSYNKYLQLTRNSF-ALVPSL 456
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 179 SELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKV 238
S L +L L N F + F +L L ++DLG N L T + S N + LK
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA-------SVFNNQVSLKS 588
Query: 239 LGLHSNQLSGILPPLIG----NFSDSLQQFYAYDC 269
L L N ++ + + G N ++ +F +DC
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 76 CNRLPSLEQLVLRSNGF--FGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSL 133
C L LE L+L+ N +I ++ LQ L + N + E G+ S +SL
Sbjct: 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS--YDEKKGDCSWTKSL 401
Query: 134 VLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSG 193
+ + + N L + L P +K L L NK+++IP + L L + N
Sbjct: 402 LSLNMSSNILTDTIFRCLP---PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS 458
Query: 194 LVPNTFGNLRFLSLLDLGNN 213
+ F L L + L N
Sbjct: 459 VPDGIFDRLTSLQKIWLHTN 478
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 31/132 (23%)
Query: 83 EQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNS 142
+ LV N +P + T Q LWL +N+ T KL V H
Sbjct: 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQIT-----------KLEPGVFDH----- 55
Query: 143 LHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNA-SELTLLELGKNSFSGLVPNTFGN 201
L NL+ L NKL IP + + ++LT L+L N + F N
Sbjct: 56 ------------LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDN 103
Query: 202 LRFLSLLDLGNN 213
L+ L+ + L NN
Sbjct: 104 LKSLTHIYLYNN 115
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 20/160 (12%)
Query: 100 LSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLK 159
++ T L L L +N+ E+I L+ L SL N + P L +LK
Sbjct: 173 IANLTDLYSLSLNYNQI-----EDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLK 227
Query: 160 WLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRS 219
+G NK+ + + + N S+LT LE+G N S + N +L L L++G+N
Sbjct: 228 ---IGNNKITDL-SPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSN------ 275
Query: 220 STTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD 259
+ S +S L N L L L++NQL +IG ++
Sbjct: 276 ---QISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTN 312
>pdb|2ORY|A Chain A, Crystal Structure Of M37 Lipase
pdb|2ORY|B Chain B, Crystal Structure Of M37 Lipase
Length = 346
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 12/174 (6%)
Query: 99 SLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL 158
+L K H+ E+ L E IG K + V GH S G L STL++ L ++
Sbjct: 135 TLQKLKPKSHIPGENKTILQFLNEKIGPEGKAKICVTGH----SKGGALSSTLALWLKDI 190
Query: 159 KWLALGMN-KLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFL-------SLLDL 210
+ + L N + TIP + A + + +L + SL L
Sbjct: 191 QGVKLSQNIDISTIPFAGPTAGNADFADYFDDCLGDQCTRIANSLDIVPYAWNTNSLKKL 250
Query: 211 GNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQF 264
+ Y++ ++S + +L + + G Q+ PPL GN + L ++
Sbjct: 251 KSIYISEQASVKPLLYQRALIRAMIAETKGKKYKQIKAETPPLEGNINPILIEY 304
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 28/152 (18%)
Query: 77 NRLPSLEQLVLRSNGFFGQIPL-SLSKCTQLQHLWLEHNKFTG-------RLPE----NI 124
N L SL L L N + IP + ++L+ LWL +N R+P ++
Sbjct: 120 NGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178
Query: 125 GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLL 184
G L KL + G + G L NLK+L LGM ++ +PN +T L L
Sbjct: 179 GELKKLEYISEG-----AFEG---------LFNLKYLNLGMCNIKDMPN-LTPLVGLEEL 223
Query: 185 ELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLT 216
E+ N F + P +F L L L + N+ ++
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 157 NLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL 215
N ++L L N ++ I ++ + L +L+LG+NS + F L L+ L+L +N+L
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 216 TTRSSTTEWSFLSSL 230
T S + +LS L
Sbjct: 136 TVIPSGA-FEYLSKL 149
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 161 LALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSS 220
L L N+ +P ++N LTL++L N S L +F N+ L L L N L
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 221 TTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD 259
T + L S L++L LH N +S ++P G F+D
Sbjct: 96 RT-FDGLKS------LRLLSLHGNDIS-VVPE--GAFND 124
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 106 LQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGM 165
L+ L+L N+ G LP +G L L + N L LPS + L +LK L +
Sbjct: 66 LKELYLGSNQL-GALP--VGVFDSLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCC 121
Query: 166 NKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLS 206
NKL +P I + LT L L +N + F L L+
Sbjct: 122 NKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 138 KAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVP 196
K H S+ +P+ N + L L N++ + P + L L LG N L
Sbjct: 29 KRHASVPAGIPT-------NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV 81
Query: 197 NTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLS 247
F +L L++LDLG N LT S ++LK L + N+L+
Sbjct: 82 GVFDSLTQLTVLDLGTNQLTVLPSAV-------FDRLVHLKELFMCCNKLT 125
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 100 LSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLK 159
K TQL L L N+ LP+ G KL L + + N L LP+ + L LK
Sbjct: 48 FDKLTQLTKLSLSQNQIQS-LPD--GVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLK 103
Query: 160 WLALGMNKLRTIPNSI 175
LAL N+L+++P+ I
Sbjct: 104 ELALDTNQLKSVPDGI 119
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 42/172 (24%)
Query: 78 RLPSLEQLVLRSNGF--FGQIPLS--LSKCTQLQHLWLEHNKFTGRLPENIGNLSK-LRS 132
+ P L + L N F Q PL LSK T L+HL+L +N G P+ +++ L+
Sbjct: 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN---GLGPQAGAKIARALQE 148
Query: 133 LVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFS 192
L + KA N+ P L+ + G N+L N S + E K
Sbjct: 149 LAVNKKAKNA-------------PPLRSIICGRNRLE-------NGS---MKEWAK---- 181
Query: 193 GLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSN 244
TF + R L + + N + R E L L C LKVL L N
Sbjct: 182 -----TFQSHRLLHTVKMVQNGI--RPEGIEHLLLEGLAYCQELKVLDLQDN 226
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 82 LEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHN 141
L++LVL N F +S + L HL++ N +L +G L KL +L +HN
Sbjct: 300 LKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN--VKKLHLGVGCLEKLGNLQTLDLSHN 357
Query: 142 SLHGHLPSTLSV-SLPNLKWLALGMNK-LRTIPNSITNASELTLLELGKNSFSGLVPNT- 198
+ +L + +L +L+ L L N+ L + +L LL+L P +
Sbjct: 358 DIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSP 417
Query: 199 FGNLRFLSLLDLGNNYLTT 217
F NL FL +L+L +L T
Sbjct: 418 FQNLHFLQVLNLTYCFLDT 436
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 42/172 (24%)
Query: 78 RLPSLEQLVLRSNGF--FGQIPLS--LSKCTQLQHLWLEHNKFTGRLPENIGNLSK-LRS 132
+ P L + L N F Q PL LSK T L+HL+L +N G P+ +++ L+
Sbjct: 91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN---GLGPQAGAKIARALQE 147
Query: 133 LVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFS 192
L + KA N+ P L+ + G N+L N S + E K
Sbjct: 148 LAVNKKAKNA-------------PPLRSIICGRNRLE-------NGS---MKEWAK---- 180
Query: 193 GLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSN 244
TF + R L + + N + R E L L C LKVL L N
Sbjct: 181 -----TFQSHRLLHTVKMVQNGI--RPEGIEHLLLEGLAYCQELKVLDLQDN 225
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query: 80 PSLEQLVL-----RSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134
PSL+ LVL RS G+I L+L T L + N F +P++ K+R L
Sbjct: 387 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD---ISRNTFHP-MPDSCQWPEKMRFLN 442
Query: 135 LGHKAHNSLHGHLPSTLSV-------------SLPNLKWLALGMNKLRTIPNS 174
L + +P TL V LP L+ L + NKL+T+P++
Sbjct: 443 LSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA 495
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query: 80 PSLEQLVL-----RSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134
PSL+ LVL RS G+I L+L T L + N F +P++ K+R L
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD---ISRNTFHP-MPDSCQWPEKMRFLN 416
Query: 135 LGHKAHNSLHGHLPSTLSV-------------SLPNLKWLALGMNKLRTIPNS 174
L + +P TL V LP L+ L + NKL+T+P++
Sbjct: 417 LSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA 469
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 82 LEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAH 140
LEQL L N + T L L L N F G + + NL KL L L ++
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDL---SY 356
Query: 141 NSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSI 175
N + L + LPNLK LAL N+L+++P+ I
Sbjct: 357 NHIRA-LGDQSFLGLPNLKELALDTNQLKSVPDGI 390
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 125 GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTL 183
G + L SL + A NS + + L NL +L L +L + P + + S L +
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
Query: 184 LELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT 231
L + N+F L + L L +LD N++ T F SSL
Sbjct: 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 125 GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTL 183
G + L SL + A NS + + L NL +L L +L + P + + S L +
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 184 LELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT 231
L + N+F L + L L +LD N++ T F SSL
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 125 GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTL 183
G + L SL + A NS + + L NL +L L +L + P + + S L +
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Query: 184 LELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT 231
L + N+F L + L L +LD N++ T F SSL
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 96 IPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSL 155
I ++ K L L+L N T LP I NLS LR L L H SL L S
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ--- 294
Query: 156 PNLKWLALGMNKLRTIPNSITNASELTLLELGKN 189
LK+ N + T+P N L L + N
Sbjct: 295 --LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 18/147 (12%)
Query: 84 QLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNS 142
QL S G F + T+L L L +N+ LP + +L++L L LG S
Sbjct: 70 QLQTLSAGVFDDL-------TELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 143 LHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGN 201
L PS + L LK L L N+L++IP + + L L L N + F
Sbjct: 122 L----PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 202 LRFLSLLDL-GNNYLTTRSST---TEW 224
L L + L GN + +R T ++W
Sbjct: 178 LGKLQTITLFGNQFDCSRCETLYLSQW 204
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 86/210 (40%), Gaps = 21/210 (10%)
Query: 54 ISSLKMIRXXXXXXXXXXPNDLCN----RLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHL 109
+ +L+ +R +D CN L L+ L L N + +C QL+ L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 110 WLEHNKFTGRLPEN-IGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKL 168
L + + ++ NL L+ L L H SL L LP L+ L L N
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSH----SLLDISSEQLFDGLPALQHLNLQGNHF 461
Query: 169 RT----IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEW 224
NS+ L +L L S + + F +L+ ++ +DL +N LT+ SS
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEAL 520
Query: 225 SFLSSLTNCIYLKVLGLHSNQLSGILPPLI 254
S L IY L L SN +S ILP L+
Sbjct: 521 SHLKG----IY---LNLASNHISIILPSLL 543
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 168 LRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFL 227
L ++P I +++ L L N + L P F L L+ LDL NN LT +
Sbjct: 21 LASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA----GVF 74
Query: 228 SSLTNCIYLKVLGLHSNQLSGI 249
LT L L L+ NQL I
Sbjct: 75 DKLTQ---LTQLSLNDNQLKSI 93
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 146 HLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASE-LTLLELGKNSFSGLVPNTFGNLRF 204
H+P+ L + NL L L N + +P+ + + E L +E G N + FG +
Sbjct: 137 HIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPK 195
Query: 205 LSLLDLGNNYLTT 217
L L+L +N L +
Sbjct: 196 LKQLNLASNQLKS 208
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 147 LPSTLSVSLPNLKWLALGMNKLRTIPNS-ITNASELTLLELGKNSFSGLVPNTFGNLRFL 205
+PS L+ ++ K L L N++ I NS + L L L N + + ++F +L L
Sbjct: 46 IPSGLTEAV---KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 206 SLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLG 240
LDL NYL+ SS S+ L++ +L +LG
Sbjct: 103 EHLDLSYNYLSNLSS----SWFKPLSSLTFLNLLG 133
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 168 LRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFL 227
L ++P I +++ L L N + L P F L L+ LDL NN LT +
Sbjct: 29 LASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA----GVF 82
Query: 228 SSLTNCIYLKVLGLHSNQLSGI 249
LT L L L+ NQL I
Sbjct: 83 DKLTQ---LTQLSLNDNQLKSI 101
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 168 LRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFL 227
L ++P I +++ L L N + L P F L L+ LDL NN LT +
Sbjct: 21 LASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPA----GVF 74
Query: 228 SSLTNCIYLKVLGLHSNQLSGI 249
LT L L L+ NQL I
Sbjct: 75 DKLTQ---LTQLSLNDNQLKSI 93
>pdb|2EX2|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli
pdb|2EX6|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Ampicillin
pdb|2EX8|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Penicillin-G
pdb|2EX9|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Penicillin-V
pdb|2EXA|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Farom
pdb|2EXB|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Flomox
Length = 458
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 202 LRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGI-LPPLIGNFSDS 260
LR + +D+GN + S + + ++ T L+ + H N+L+ I + PL G + S
Sbjct: 321 LRQQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPLAG-YDGS 379
Query: 261 LQQFYA-YDCELKGSIPQEIGNLNGLIDL 288
LQ + + G + + G+L G+ +L
Sbjct: 380 LQYRAGLHQAGVDGKVSAKTGSLQGVYNL 408
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 93 FGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLS 152
+P + TQ+ HL++ N+ T P +L++L L L A N L LP +
Sbjct: 31 LASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNL---AVNQLTA-LPVGVF 84
Query: 153 VSLPNLKWLALGMNKLRTIPNSI-TNASELTLLELGKNSF 191
L L LAL +N+L++IP + N LT + L N +
Sbjct: 85 DKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPW 124
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 84 QLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNS 142
QL S G F + T+L L L +N+ LP + +L++L L LG S
Sbjct: 70 QLQTLSAGVFDDL-------TELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 143 LHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGN 201
L PS + L LK L L N+L++IP + + L L L N + F
Sbjct: 122 L----PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 202 LRFLSLLDL-GNNYLTTR 218
L L + L GN + +R
Sbjct: 178 LGKLQTITLFGNQFDCSR 195
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 8/131 (6%)
Query: 166 NKLRTIPN-SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEW 224
N++ +P S + LT+L L N+ +G+ F L L LDL +N T +
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 225 SFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNG 284
L +L L L L + P L + +LQ Y D L+ +L
Sbjct: 101 RGLG------HLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 285 LIDLRLQDNDL 295
L L L N +
Sbjct: 154 LTHLFLHGNRI 164
>pdb|3M7V|A Chain A, Crystal Structure Of Phosphopentomutase From Streptococcus
M
pdb|3M7V|B Chain B, Crystal Structure Of Phosphopentomutase From Streptococcus
M
Length = 413
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 145 GHLPSTLSVSLPNLKWLALG----MNKLRTIPNSITNASELTLLE---LGKNSFSG 193
GH+ T+ +++PN+ + LG L+T+P +T LE LGK++ +G
Sbjct: 42 GHISKTVGLNVPNMAKIGLGNIPRDTPLKTVPAENHPTGYVTKLEEVSLGKDTMTG 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,651,172
Number of Sequences: 62578
Number of extensions: 322770
Number of successful extensions: 846
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 189
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)