Query 036258
Match_columns 331
No_of_seqs 197 out of 3610
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 18:49:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-34 4.9E-39 249.5 21.6 282 23-321 2-306 (313)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-33 4.3E-38 271.6 25.4 267 54-326 393-723 (768)
3 3rgz_A Protein brassinosteroid 100.0 1.4E-33 4.7E-38 271.3 24.6 241 79-330 393-703 (768)
4 3v47_A TOLL-like receptor 5B a 100.0 1.2E-32 4.1E-37 249.9 24.6 273 42-325 41-413 (455)
5 2id5_A Lingo-1, leucine rich r 100.0 1.3E-31 4.4E-36 244.6 22.7 267 41-320 42-309 (477)
6 3v47_A TOLL-like receptor 5B a 100.0 6E-31 2.1E-35 238.7 22.6 266 55-325 30-388 (455)
7 3t6q_A CD180 antigen; protein- 100.0 1.2E-30 4.2E-35 244.9 25.2 262 56-324 255-540 (606)
8 2id5_A Lingo-1, leucine rich r 100.0 1.2E-30 4E-35 238.2 22.7 263 55-330 32-295 (477)
9 1ogq_A PGIP-2, polygalacturona 100.0 8.2E-31 2.8E-35 226.0 17.2 233 80-326 50-287 (313)
10 3o6n_A APL1; leucine-rich repe 100.0 3.5E-30 1.2E-34 229.1 21.5 256 46-320 60-331 (390)
11 1xku_A Decorin; proteoglycan, 100.0 1.4E-29 4.7E-34 220.2 24.7 242 56-320 32-276 (330)
12 3t6q_A CD180 antigen; protein- 100.0 3.8E-30 1.3E-34 241.6 22.4 275 42-324 265-564 (606)
13 3vq2_A TLR4, TOLL-like recepto 100.0 4.9E-30 1.7E-34 240.9 22.5 169 156-327 350-540 (606)
14 4eco_A Uncharacterized protein 100.0 1.1E-30 3.8E-35 245.9 16.8 266 50-327 268-585 (636)
15 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-29 4.9E-34 237.7 24.3 98 231-329 421-519 (606)
16 4fcg_A Uncharacterized protein 100.0 4.1E-30 1.4E-34 223.0 18.3 266 23-320 23-314 (328)
17 4eco_A Uncharacterized protein 100.0 8E-30 2.7E-34 240.1 20.9 251 50-320 325-600 (636)
18 2ft3_A Biglycan; proteoglycan, 100.0 2E-29 6.9E-34 219.3 21.5 251 56-320 34-307 (332)
19 3zyi_A Leucine-rich repeat-con 100.0 5.5E-29 1.9E-33 225.5 24.4 248 56-321 55-304 (452)
20 3o6n_A APL1; leucine-rich repe 100.0 2.5E-29 8.6E-34 223.6 21.6 264 41-322 79-354 (390)
21 2z66_A Variable lymphocyte rec 100.0 1.8E-29 6.1E-34 217.2 20.0 251 57-323 9-264 (306)
22 3oja_B Anopheles plasmodium-re 100.0 1.8E-29 6.1E-34 236.3 21.4 255 47-320 67-337 (597)
23 3zyj_A Leucine-rich repeat-con 100.0 7.8E-29 2.7E-33 223.8 24.7 247 56-320 44-292 (440)
24 1xku_A Decorin; proteoglycan, 100.0 1.4E-28 5E-33 213.7 24.9 246 55-320 52-306 (330)
25 3j0a_A TOLL-like receptor 5; m 100.0 6.4E-29 2.2E-33 241.2 23.3 276 41-320 34-375 (844)
26 2z80_A TOLL-like receptor 2, v 100.0 1.3E-29 4.3E-34 222.5 16.3 257 55-324 52-318 (353)
27 2z63_A TOLL-like receptor 4, v 100.0 7.3E-29 2.5E-33 231.2 22.2 88 51-139 72-160 (570)
28 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-28 4.6E-33 214.1 22.0 250 51-318 74-331 (332)
29 4ecn_A Leucine-rich repeat pro 100.0 1.7E-28 5.8E-33 235.7 24.4 268 49-328 509-826 (876)
30 2z63_A TOLL-like receptor 4, v 100.0 1.5E-28 5E-33 229.2 23.4 125 41-169 38-162 (570)
31 4ecn_A Leucine-rich repeat pro 100.0 3.2E-29 1.1E-33 240.7 19.4 164 50-219 443-635 (876)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-28 4.1E-33 229.3 22.6 95 42-140 63-158 (562)
33 2z7x_B TOLL-like receptor 1, v 100.0 7.5E-29 2.6E-33 228.7 20.3 91 44-138 34-125 (520)
34 3oja_B Anopheles plasmodium-re 100.0 8.7E-29 3E-33 231.6 20.7 264 41-322 85-360 (597)
35 1ziw_A TOLL-like receptor 3; i 100.0 7.2E-28 2.5E-32 229.1 25.3 239 41-292 35-305 (680)
36 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-28 6E-33 226.2 19.8 128 55-191 21-150 (520)
37 1ozn_A Reticulon 4 receptor; N 100.0 1.7E-28 5.7E-33 208.9 17.8 262 50-328 6-269 (285)
38 1ziw_A TOLL-like receptor 3; i 100.0 6.2E-28 2.1E-32 229.5 23.5 269 50-324 324-626 (680)
39 3j0a_A TOLL-like receptor 5; m 100.0 2.7E-28 9.1E-33 236.9 21.0 271 54-329 23-360 (844)
40 4fmz_A Internalin; leucine ric 100.0 2E-27 7E-32 207.9 23.4 248 50-324 61-328 (347)
41 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.3E-28 2.5E-32 224.0 20.9 128 55-191 52-181 (562)
42 4fcg_A Uncharacterized protein 100.0 4.2E-28 1.4E-32 210.3 17.9 213 79-331 80-301 (328)
43 2z66_A Variable lymphocyte rec 100.0 1.3E-28 4.5E-33 211.8 14.6 262 55-329 28-296 (306)
44 4fmz_A Internalin; leucine ric 100.0 2.8E-27 9.6E-32 207.0 22.9 245 51-320 84-346 (347)
45 4g8a_A TOLL-like receptor 4; l 100.0 4.7E-27 1.6E-31 221.5 24.8 124 41-168 62-185 (635)
46 4g8a_A TOLL-like receptor 4; l 100.0 5.3E-27 1.8E-31 221.2 24.6 133 55-192 52-186 (635)
47 3o53_A Protein LRIM1, AGAP0063 100.0 5.3E-29 1.8E-33 215.2 9.1 250 51-327 30-283 (317)
48 2z81_A CD282 antigen, TOLL-lik 100.0 3.9E-28 1.3E-32 225.3 14.4 170 44-217 39-210 (549)
49 3o53_A Protein LRIM1, AGAP0063 100.0 1.3E-28 4.5E-33 212.7 10.2 249 55-329 10-260 (317)
50 2z81_A CD282 antigen, TOLL-lik 99.9 7.9E-27 2.7E-31 216.5 20.1 96 43-139 62-159 (549)
51 1o6v_A Internalin A; bacterial 99.9 2.8E-26 9.6E-31 208.5 22.6 245 51-320 64-344 (466)
52 3zyi_A Leucine-rich repeat-con 99.9 1.4E-26 4.8E-31 209.7 20.5 227 55-296 75-303 (452)
53 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-26 8.9E-31 195.4 20.6 227 83-324 14-242 (285)
54 3zyj_A Leucine-rich repeat-con 99.9 2.2E-26 7.4E-31 207.8 20.2 227 55-296 64-292 (440)
55 1o6v_A Internalin A; bacterial 99.9 6.1E-26 2.1E-30 206.3 22.8 149 154-321 241-389 (466)
56 1wwl_A Monocyte differentiatio 99.9 1.9E-28 6.6E-33 211.2 4.2 253 50-321 38-310 (312)
57 2z80_A TOLL-like receptor 2, v 99.9 1.2E-26 4.2E-31 203.5 13.1 247 43-299 64-317 (353)
58 3bz5_A Internalin-J, INLJ; leu 99.9 3.5E-25 1.2E-29 200.2 21.9 211 50-297 37-247 (457)
59 3oja_A Leucine-rich immune mol 99.9 1.6E-26 5.6E-31 210.7 13.3 236 53-315 32-270 (487)
60 2z62_A TOLL-like receptor 4, v 99.9 5.2E-25 1.8E-29 186.5 21.5 221 59-296 11-237 (276)
61 3bz5_A Internalin-J, INLJ; leu 99.9 4.2E-25 1.4E-29 199.7 22.1 236 50-321 59-332 (457)
62 3oja_A Leucine-rich immune mol 99.9 2E-26 6.9E-31 210.1 12.4 226 79-329 33-260 (487)
63 1jl5_A Outer protein YOPM; leu 99.9 6.9E-24 2.4E-28 191.6 23.0 248 55-330 131-421 (454)
64 3g06_A SSPH2 (leucine-rich rep 99.9 5E-24 1.7E-28 198.4 21.3 233 55-328 61-305 (622)
65 1wwl_A Monocyte differentiatio 99.9 3E-25 1E-29 191.2 10.5 224 57-297 65-310 (312)
66 2o6q_A Variable lymphocyte rec 99.9 2.8E-23 9.5E-28 175.2 22.3 154 56-217 17-171 (270)
67 1p9a_G Platelet glycoprotein I 99.9 1.3E-23 4.3E-28 178.9 20.2 202 51-272 6-208 (290)
68 2z62_A TOLL-like receptor 4, v 99.9 7.8E-24 2.7E-28 179.2 18.0 206 55-274 28-239 (276)
69 1jl5_A Outer protein YOPM; leu 99.9 5.6E-23 1.9E-27 185.7 24.4 246 55-330 111-382 (454)
70 2o6q_A Variable lymphocyte rec 99.9 6.7E-23 2.3E-27 172.8 21.9 203 79-296 15-218 (270)
71 3rfs_A Internalin B, repeat mo 99.9 6.9E-24 2.4E-28 179.1 15.8 224 57-330 21-245 (272)
72 1z7x_W Ribonuclease inhibitor; 99.9 4.4E-27 1.5E-31 213.6 -5.2 217 77-296 110-354 (461)
73 3goz_A Leucine-rich repeat-con 99.9 2.1E-25 7.3E-30 196.1 3.5 243 52-298 19-299 (362)
74 1z7x_W Ribonuclease inhibitor; 99.9 3.9E-26 1.3E-30 207.4 -1.8 269 50-322 108-413 (461)
75 1p9a_G Platelet glycoprotein I 99.9 1.6E-22 5.5E-27 172.1 20.4 203 76-296 6-208 (290)
76 3rfs_A Internalin B, repeat mo 99.9 4E-23 1.4E-27 174.4 16.2 210 50-283 36-246 (272)
77 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-22 1.3E-26 185.8 23.9 228 55-330 40-283 (622)
78 2ast_B S-phase kinase-associat 99.9 2.2E-24 7.7E-29 187.7 7.3 255 55-329 47-315 (336)
79 2ca6_A RAN GTPase-activating p 99.9 9.7E-26 3.3E-30 200.1 -1.8 89 51-139 28-133 (386)
80 2xwt_C Thyrotropin receptor; s 99.9 5.1E-23 1.7E-27 170.4 13.4 206 67-318 23-237 (239)
81 3goz_A Leucine-rich repeat-con 99.9 3.7E-24 1.3E-28 188.2 4.4 260 59-322 2-299 (362)
82 2ca6_A RAN GTPase-activating p 99.9 2.2E-24 7.6E-29 191.4 0.9 262 57-324 11-320 (386)
83 4glp_A Monocyte differentiatio 99.9 8.1E-23 2.8E-27 175.8 10.3 226 53-297 62-308 (310)
84 1h6u_A Internalin H; cell adhe 99.9 7.9E-22 2.7E-26 169.4 15.9 195 51-273 37-231 (308)
85 4glp_A Monocyte differentiatio 99.9 2.1E-22 7E-27 173.3 12.1 233 79-321 63-308 (310)
86 1h6u_A Internalin H; cell adhe 99.9 1.9E-21 6.6E-26 166.9 17.0 207 61-297 25-231 (308)
87 3m19_A Variable lymphocyte rec 99.9 4.7E-21 1.6E-25 159.8 18.7 180 55-249 14-194 (251)
88 2xwt_C Thyrotropin receptor; s 99.9 2.8E-21 9.4E-26 160.0 15.4 165 154-330 53-228 (239)
89 3m19_A Variable lymphocyte rec 99.9 2E-20 6.8E-25 155.9 18.9 178 105-297 15-193 (251)
90 4ay9_X Follicle-stimulating ho 99.9 1.8E-20 6.1E-25 163.9 18.2 237 58-316 12-255 (350)
91 2ast_B S-phase kinase-associat 99.9 2.8E-22 9.7E-27 174.4 5.3 241 50-305 63-315 (336)
92 2o6s_A Variable lymphocyte rec 99.8 6.2E-20 2.1E-24 148.5 14.2 149 57-213 9-158 (208)
93 2o6s_A Variable lymphocyte rec 99.8 5.5E-20 1.9E-24 148.8 13.8 159 157-330 29-188 (208)
94 3cvr_A Invasion plasmid antige 99.8 7.5E-20 2.6E-24 168.5 14.4 187 81-306 60-253 (571)
95 3cvr_A Invasion plasmid antige 99.8 1.8E-19 6.1E-24 165.9 14.9 194 56-283 60-254 (571)
96 2v9t_B SLIT homolog 2 protein 99.8 8.1E-19 2.8E-23 143.1 16.3 152 159-320 14-165 (220)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 7.2E-19 2.4E-23 143.4 15.8 156 159-324 14-170 (220)
98 4ay9_X Follicle-stimulating ho 99.8 7E-19 2.4E-23 153.8 16.5 225 83-325 12-241 (350)
99 1h6t_A Internalin B; cell adhe 99.8 1.3E-18 4.4E-23 148.1 17.3 174 50-248 41-214 (291)
100 3e6j_A Variable lymphocyte rec 99.8 1.6E-18 5.5E-23 142.3 16.3 157 157-324 20-176 (229)
101 3ogk_B Coronatine-insensitive 99.8 2.2E-21 7.4E-26 181.5 -1.0 167 154-322 340-528 (592)
102 3e6j_A Variable lymphocyte rec 99.8 2.5E-18 8.5E-23 141.1 16.3 154 56-217 20-173 (229)
103 1h6t_A Internalin B; cell adhe 99.8 1.6E-18 5.5E-23 147.5 15.3 186 85-297 29-214 (291)
104 4ezg_A Putative uncharacterize 99.8 6.5E-19 2.2E-23 141.2 12.0 154 154-321 42-195 (197)
105 2v9t_B SLIT homolog 2 protein 99.8 2.3E-18 7.9E-23 140.4 15.5 152 57-216 13-165 (220)
106 1m9s_A Internalin B; cell inva 99.8 2.1E-18 7.3E-23 160.4 16.0 176 51-251 39-214 (605)
107 1m9s_A Internalin B; cell inva 99.8 1E-18 3.5E-23 162.5 13.4 192 55-274 21-212 (605)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 7E-18 2.4E-22 137.5 15.1 152 57-216 13-166 (220)
109 2xot_A Amphoterin-induced prot 99.8 3.5E-18 1.2E-22 150.0 12.6 176 57-247 20-202 (361)
110 3ogk_B Coronatine-insensitive 99.8 6.4E-20 2.2E-24 171.6 1.6 263 52-321 161-477 (592)
111 3sb4_A Hypothetical leucine ri 99.7 3.9E-18 1.3E-22 147.8 10.5 248 54-314 48-328 (329)
112 4ezg_A Putative uncharacterize 99.7 1E-17 3.6E-22 134.1 11.3 153 51-215 40-193 (197)
113 1xeu_A Internalin C; cellular 99.7 1.8E-17 6.1E-22 138.9 12.2 168 103-296 18-185 (263)
114 1dce_A Protein (RAB geranylger 99.7 1.7E-20 5.9E-25 173.4 -6.9 204 77-314 346-567 (567)
115 2xot_A Amphoterin-induced prot 99.7 6.9E-17 2.4E-21 141.7 15.3 176 131-321 21-203 (361)
116 1xeu_A Internalin C; cellular 99.7 8.9E-18 3.1E-22 140.7 8.9 167 57-249 21-187 (263)
117 4fdw_A Leucine rich hypothetic 99.7 8.6E-16 2.9E-20 136.1 20.6 262 39-320 120-383 (401)
118 1dce_A Protein (RAB geranylger 99.7 2.2E-20 7.5E-25 172.7 -9.3 196 101-324 346-550 (567)
119 2p1m_B Transport inhibitor res 99.7 2.6E-19 9E-24 167.5 -2.2 135 51-186 101-242 (594)
120 4b8c_D Glucose-repressible alc 99.7 1E-17 3.4E-22 159.5 7.0 215 55-320 173-404 (727)
121 2p1m_B Transport inhibitor res 99.7 3.3E-19 1.1E-23 166.8 -4.2 167 47-213 58-245 (594)
122 2ell_A Acidic leucine-rich nuc 99.7 2.1E-16 7.2E-21 123.2 11.6 138 179-327 24-166 (168)
123 1w8a_A SLIT protein; signaling 99.7 7.9E-16 2.7E-20 122.6 12.9 131 158-298 10-141 (192)
124 4b8c_D Glucose-repressible alc 99.6 4.6E-17 1.6E-21 155.0 4.4 152 149-317 217-369 (727)
125 4fdw_A Leucine rich hypothetic 99.6 2.8E-14 9.4E-19 126.4 21.7 244 51-320 109-358 (401)
126 1w8a_A SLIT protein; signaling 99.6 5.9E-16 2E-20 123.3 9.8 130 131-275 11-142 (192)
127 2ell_A Acidic leucine-rich nuc 99.6 2.4E-15 8.4E-20 117.1 11.6 133 55-218 24-162 (168)
128 2je0_A Acidic leucine-rich nuc 99.6 8.1E-16 2.8E-20 117.3 7.8 128 179-316 17-149 (149)
129 3sb4_A Hypothetical leucine ri 99.6 1.9E-15 6.4E-20 130.9 10.6 228 45-290 83-328 (329)
130 2wfh_A SLIT homolog 2 protein 99.6 1.2E-14 4.1E-19 115.7 12.8 125 57-190 12-137 (193)
131 2wfh_A SLIT homolog 2 protein 99.6 1.7E-14 5.7E-19 114.9 13.5 127 159-296 13-139 (193)
132 2o6r_A Variable lymphocyte rec 99.6 1.5E-14 5.2E-19 113.6 12.9 130 158-297 9-138 (177)
133 2o6r_A Variable lymphocyte rec 99.6 4.2E-14 1.4E-18 111.0 14.4 132 182-324 10-141 (177)
134 2je0_A Acidic leucine-rich nuc 99.6 7.9E-15 2.7E-19 111.8 9.0 126 55-211 17-148 (149)
135 1a9n_A U2A', U2A'; complex (nu 99.6 8.1E-15 2.8E-19 115.0 8.9 130 154-319 17-152 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.6 1.8E-14 6.1E-19 113.1 10.3 82 51-136 15-96 (176)
137 1ds9_A Outer arm dynein; leuci 99.4 3.1E-15 1.1E-19 119.8 -2.0 139 167-320 36-185 (198)
138 1ds9_A Outer arm dynein; leuci 99.4 8.9E-16 3E-20 123.0 -5.7 114 70-193 39-154 (198)
139 3g39_A Variable lymphocyte rec 99.4 9.6E-13 3.3E-17 102.5 11.0 86 234-320 30-115 (170)
140 3g39_A Variable lymphocyte rec 99.4 1.8E-12 6.1E-17 100.9 10.9 106 56-169 10-115 (170)
141 2r9u_A Variable lymphocyte rec 99.4 2.9E-12 1E-16 100.1 11.5 104 182-296 15-118 (174)
142 2r9u_A Variable lymphocyte rec 99.4 3E-12 1E-16 100.0 11.5 105 57-169 14-118 (174)
143 4fs7_A Uncharacterized protein 99.4 3.2E-11 1.1E-15 106.8 19.6 257 46-317 62-376 (394)
144 4gt6_A Cell surface protein; l 99.4 4.2E-11 1.4E-15 106.1 19.2 111 196-318 258-368 (394)
145 4fs7_A Uncharacterized protein 99.4 4.7E-11 1.6E-15 105.8 19.3 250 67-324 59-358 (394)
146 3un9_A NLR family member X1; l 99.3 4.3E-14 1.5E-18 124.0 -5.8 89 156-247 155-252 (372)
147 4gt6_A Cell surface protein; l 99.2 1.7E-09 5.8E-14 95.7 21.6 265 44-325 52-350 (394)
148 3un9_A NLR family member X1; l 99.2 3.2E-13 1.1E-17 118.5 -2.7 165 54-218 71-254 (372)
149 4h09_A Hypothetical leucine ri 99.2 8.2E-09 2.8E-13 90.8 22.0 253 40-316 54-342 (379)
150 2ifg_A High affinity nerve gro 99.1 1.6E-10 5.6E-15 100.5 9.9 103 183-296 12-116 (347)
151 2ifg_A High affinity nerve gro 99.1 2E-10 6.9E-15 99.9 10.2 103 59-169 12-116 (347)
152 2ra8_A Uncharacterized protein 99.0 1.5E-10 5.2E-15 100.7 5.4 160 153-318 169-341 (362)
153 4h09_A Hypothetical leucine ri 98.8 9.7E-07 3.3E-11 77.5 22.4 245 51-320 42-322 (379)
154 2ra8_A Uncharacterized protein 98.8 1.5E-09 5.2E-14 94.4 4.2 142 171-322 164-322 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 1.3E-09 4.3E-14 85.9 -0.8 61 260-320 94-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 8.2E-09 2.8E-13 81.2 -1.0 14 101-114 33-46 (185)
157 3e4g_A ATP synthase subunit S, 98.3 2.3E-07 7.8E-12 71.3 3.4 84 204-294 62-150 (176)
158 3rw6_A Nuclear RNA export fact 98.2 8.4E-07 2.9E-11 73.4 4.7 78 233-313 169-257 (267)
159 3rw6_A Nuclear RNA export fact 98.2 7.8E-07 2.7E-11 73.6 4.3 112 46-163 132-258 (267)
160 3e4g_A ATP synthase subunit S, 98.2 2.9E-07 9.9E-12 70.8 1.2 89 231-320 58-153 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 8.1E-06 2.8E-10 63.9 -0.3 120 176-319 38-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 2.6E-05 8.9E-10 61.0 1.0 73 173-245 92-168 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.00086 2.9E-08 48.9 6.0 57 58-117 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0051 1.8E-07 44.7 6.3 55 160-216 12-68 (130)
165 2lz0_A Uncharacterized protein 86.7 1.8 6.2E-05 29.4 5.9 45 43-89 8-52 (100)
166 2lz0_A Uncharacterized protein 86.6 1.8 6E-05 29.4 5.8 49 64-114 5-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.4e-34 Score=249.54 Aligned_cols=282 Identities=29% Similarity=0.443 Sum_probs=242.2
Q ss_pred cCChhhHHHHHHHHHhccCCCCCCCcc------h---------hcCC--CCccEEEcCCCcCcc--CCChhhhcCCCCCc
Q 036258 23 KNITTDQSALLAFKAHIADPYSVLTKN------C---------FYNI--SSLKMIRLSSNSLSG--SLPNDLCNRLPSLE 83 (331)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~------~---------~~~~--~~L~~L~l~~~~i~~--~~~~~~~~~~~~L~ 83 (331)
.|.+.+..++.+||..+.+|. .+..| | -..- .++++|+++++.+.+ .+|..+ ..+++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL-ANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGG-GGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhH-hCCCCCC
Confidence 366778889999998887653 33333 1 1111 689999999999997 788766 7899999
Q ss_pred EEEccC-CcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEE
Q 036258 84 QLVLRS-NGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA 162 (331)
Q Consensus 84 ~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 162 (331)
+|++++ |.+.+..|..|+.+++|++|++++|.+++.+|..+..+++|++|++++|.. .+.++..+. .+++|++|+
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l---~~~~p~~~~-~l~~L~~L~ 155 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL---SGTLPPSIS-SLPNLVGIT 155 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE---ESCCCGGGG-GCTTCCEEE
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc---CCcCChHHh-cCCCCCeEE
Confidence 999995 889889999999999999999999999988999999999999999965554 444555444 899999999
Q ss_pred cCCCCCC-CCcccccCCC-CCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEE
Q 036258 163 LGMNKLR-TIPNSITNAS-ELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLG 240 (331)
Q Consensus 163 l~~~~l~-~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 240 (331)
+++|.+. .+|..+..++ .|++|++++|.+.+..|..+..+. |++|++++|.+.. ..+..+..+++|++|+
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-------DASVLFGSDKNTQKIH 227 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-------CCGGGCCTTSCCSEEE
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC-------cCCHHHhcCCCCCEEE
Confidence 9999998 7888899898 999999999999988898898887 9999999999986 3566788999999999
Q ss_pred eecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCe-e
Q 036258 241 LHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNN-L 319 (331)
Q Consensus 241 l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~ 319 (331)
+++|.+.+..+. +..++ +|++|++++|.+++.+|.++..+++|+.|++++|.+++.+|.. ..+++|+.+++++|+ +
T Consensus 228 L~~N~l~~~~~~-~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 228 LAKNSLAFDLGK-VGLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCSSEECCBGGG-CCCCT-TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred CCCCceeeecCc-ccccC-CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 999999866665 45454 9999999999999999999999999999999999999888886 889999999999999 6
Q ss_pred ee
Q 036258 320 QG 321 (331)
Q Consensus 320 ~~ 321 (331)
.|
T Consensus 305 c~ 306 (313)
T 1ogq_A 305 CG 306 (313)
T ss_dssp ES
T ss_pred cC
Confidence 65
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-33 Score=271.62 Aligned_cols=267 Identities=33% Similarity=0.516 Sum_probs=229.7
Q ss_pred CCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccc
Q 036258 54 ISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSL 133 (331)
Q Consensus 54 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 133 (331)
+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 6788888888888886777666 778999999999999888888889999999999999999988888889999999999
Q ss_pred ccCccccccccccCCcchhcCCCCCcEEEcCCCCCC-CCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccC
Q 036258 134 VLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN 212 (331)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 212 (331)
++++|.. .+.++..+. .+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 472 ~L~~N~l---~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 472 ILDFNDL---TGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp ECCSSCC---CSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred EecCCcc---cCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 9965544 444555544 8899999999999988 7788899999999999999999988899999999999999999
Q ss_pred CcccCc-cCCC--------------------------------------------------------------ccccccc
Q 036258 213 NYLTTR-SSTT--------------------------------------------------------------EWSFLSS 229 (331)
Q Consensus 213 ~~l~~~-~~~~--------------------------------------------------------------~~~~~~~ 229 (331)
|.+.+. +... .-..+..
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 987631 1100 0012234
Q ss_pred cccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCC
Q 036258 230 LTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQL 309 (331)
Q Consensus 230 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 309 (331)
+..+++|+.|++++|.+.+.+|..++.+. .|+.|+|++|.+++.+|..++.+++|+.|++++|.+++.+|..+..+++|
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMP-YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred hhccccccEEECcCCcccccCCHHHhccc-cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 56678899999999999999999999888 99999999999999999999999999999999999999999999999999
Q ss_pred CeEeccCCeeeecCCcc
Q 036258 310 QGLFLFGNNLQGSIPSD 326 (331)
Q Consensus 310 ~~L~l~~n~~~~~~p~~ 326 (331)
++|++++|+++|.||+.
T Consensus 707 ~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 707 TEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp SEEECCSSEEEEECCSS
T ss_pred CEEECcCCcccccCCCc
Confidence 99999999999999974
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-33 Score=271.34 Aligned_cols=241 Identities=35% Similarity=0.577 Sum_probs=182.0
Q ss_pred CCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCC
Q 036258 79 LPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL 158 (331)
Q Consensus 79 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 158 (331)
+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|. +.+.++..+. .+++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~~~-~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM---LEGEIPQELM-YVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC---CCSCCCGGGG-GCTTC
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc---ccCcCCHHHc-CCCCc
Confidence 3445555555555555555555666666666666666665666666666666666664333 3334444443 67778
Q ss_pred cEEEcCCCCCC-CCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCc
Q 036258 159 KWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLK 237 (331)
Q Consensus 159 ~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~ 237 (331)
++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.. .++..+..+++|+
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-------~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG-------NIPAELGDCRSLI 541 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE-------ECCGGGGGCTTCC
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC-------cCCHHHcCCCCCC
Confidence 88888777776 566777777888888888888877777777778888888888887775 4667788899999
Q ss_pred EEEeecccccccCCchhhhc------------------------------------------------------------
Q 036258 238 VLGLHSNQLSGILPPLIGNF------------------------------------------------------------ 257 (331)
Q Consensus 238 ~L~l~~n~~~~~~~~~~~~~------------------------------------------------------------ 257 (331)
+|++++|.+.+.+|..++..
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence 99999999887777655331
Q ss_pred ---------cccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCcccc
Q 036258 258 ---------SDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLC 328 (331)
Q Consensus 258 ---------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 328 (331)
.++++.|++++|++++.+|..++.++.|+.|++++|.+++.+|..++.+++|+.|++++|+++|.+|+.+.
T Consensus 622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 13688999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 036258 329 HW 330 (331)
Q Consensus 329 ~~ 330 (331)
++
T Consensus 702 ~l 703 (768)
T 3rgz_A 702 AL 703 (768)
T ss_dssp GC
T ss_pred CC
Confidence 65
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-32 Score=249.89 Aligned_cols=273 Identities=21% Similarity=0.266 Sum_probs=196.1
Q ss_pred CCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCC
Q 036258 42 PYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLP 121 (331)
Q Consensus 42 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 121 (331)
....+....|.++++|++|++++|.+.+.++...|..+++|++|++++|.+.+..|..|+++++|++|++++|.+++..+
T Consensus 41 ~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 120 (455)
T 3v47_A 41 SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVL 120 (455)
T ss_dssp CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHH
T ss_pred ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcccc
Confidence 33444445678888888888888877656666666778888888888888877777778888888888888887775444
Q ss_pred cc--ccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccC---------------------
Q 036258 122 EN--IGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITN--------------------- 177 (331)
Q Consensus 122 ~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~--------------------- 177 (331)
.. +..+++|++|++++|.... ..+...+..+++|++|++++|.+..+ +..+..
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~ 197 (455)
T 3v47_A 121 SGNFFKPLTSLEMLVLRDNNIKK---IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197 (455)
T ss_dssp HSSTTTTCTTCCEEECCSSBCCS---CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCST
T ss_pred CcccccCcccCCEEECCCCccCc---cCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccch
Confidence 33 7777788888886554432 23333344677777777777766532 222211
Q ss_pred -------------CC---------------------------------------------------------------CC
Q 036258 178 -------------AS---------------------------------------------------------------EL 181 (331)
Q Consensus 178 -------------l~---------------------------------------------------------------~L 181 (331)
++ +|
T Consensus 198 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 277 (455)
T 3v47_A 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277 (455)
T ss_dssp TCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCC
T ss_pred hhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCc
Confidence 12 44
Q ss_pred ceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccc
Q 036258 182 TLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSL 261 (331)
Q Consensus 182 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 261 (331)
+.|++++|.+.+..+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+..++ +|
T Consensus 278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L 349 (455)
T 3v47_A 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-------DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD-KL 349 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT-TC
T ss_pred eEEEecCccccccchhhcccCCCCCEEECCCCccccc-------ChhHhcCcccCCEEECCCCccCCcChhHhcCcc-cC
Confidence 4555555555555566677778888888888877753 344577888888999988888877677777766 89
Q ss_pred cEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCc
Q 036258 262 QQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPS 325 (331)
Q Consensus 262 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 325 (331)
+.|++++|.+.+..|.++.++++|+.|++++|.+++..+..+..+++|++|++++|++++.+|.
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9999999988877788888889999999999998865555678888999999999998888873
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-31 Score=244.55 Aligned_cols=267 Identities=20% Similarity=0.204 Sum_probs=168.2
Q ss_pred CCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC
Q 036258 41 DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL 120 (331)
Q Consensus 41 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 120 (331)
+....+....|.++++|++|++++|.+. .++...|..+++|++|++++|.+....+..|.++++|++|++++|.+....
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 120 (477)
T 2id5_A 42 NRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC
T ss_pred CccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC
Confidence 3344444556888888888888888887 454444578888888888888887655566788888888888888888777
Q ss_pred CccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhc
Q 036258 121 PENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTF 199 (331)
Q Consensus 121 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l 199 (331)
+..+..+++|++|++++|....+ ....+..+++|++|++.+|.+..++ ..+..+++|+.|++++|.+....+..+
T Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~ 196 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGDNDLVYI----SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196 (477)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEE----CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS
T ss_pred hhHccccccCCEEECCCCcccee----ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc
Confidence 77788888888888866655433 2233447788888888888887665 457778888888888888877766677
Q ss_pred cCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccc
Q 036258 200 GNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI 279 (331)
Q Consensus 200 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 279 (331)
..+++|++|++++|.... .++.......+|++|++++|.+.+..+..+..++ +|+.|++++|.+.+..+..+
T Consensus 197 ~~l~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 197 KRLYRLKVLEISHWPYLD-------TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp CSCTTCCEEEEECCTTCC-------EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSC
T ss_pred ccCcccceeeCCCCcccc-------ccCcccccCccccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhc
Confidence 777777777777764433 1222222233455555555554422222333333 45555555555544444444
Q ss_pred cCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258 280 GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320 (331)
Q Consensus 280 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 320 (331)
.++++|+.|++++|.+.+..+..|..+++|+.|++++|.++
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 44555555555555554444444444555555555555544
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=6e-31 Score=238.69 Aligned_cols=266 Identities=22% Similarity=0.209 Sum_probs=206.1
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccc-cCCccCcCCCCCCEEEccCccccccCCccccCccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFG-QIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSL 133 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 133 (331)
++|++|++++|.+. .++...|..+++|++|++++|.+.+ ..+..|..+++|++|++++|.+++..|..+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 68999999999998 5544555899999999999998864 446779999999999999999998889999999999999
Q ss_pred ccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-ccc-ccCCCCCceeeCcCccccccCchhccCC---------
Q 036258 134 VLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNS-ITNASELTLLELGKNSFSGLVPNTFGNL--------- 202 (331)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~--------- 202 (331)
++++|..... ......+..+++|++|++++|.+..+ |.. +..+++|++|++++|.+.+..+..+..+
T Consensus 109 ~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 109 TLTQCNLDGA--VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp ECTTSCCBTH--HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred eCCCCCCCcc--ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence 9977665431 11123345789999999999999866 444 8899999999999999887666544432
Q ss_pred -------------------------CCCCEEEccCCcccCccC-------------------------------------
Q 036258 203 -------------------------RFLSLLDLGNNYLTTRSS------------------------------------- 220 (331)
Q Consensus 203 -------------------------~~L~~L~l~~~~l~~~~~------------------------------------- 220 (331)
++|++|++++|.+.....
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 457777777775532000
Q ss_pred -------------------CCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccC
Q 036258 221 -------------------TTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGN 281 (331)
Q Consensus 221 -------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 281 (331)
......+..+..+++|++|++++|.+.+..+..+..+. +|+.|++++|.+.+..|..+.+
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGGTT
T ss_pred cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCEEECCCCccCCcChhHhcC
Confidence 00001244567778888888888888877777777766 8888888888888777788888
Q ss_pred CCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCc
Q 036258 282 LNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPS 325 (331)
Q Consensus 282 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 325 (331)
+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|.
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~ 388 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPD 388 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCT
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCccc-cCCH
Confidence 888888888888888777788888888888888888888 4554
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=1.2e-30 Score=244.92 Aligned_cols=262 Identities=21% Similarity=0.242 Sum_probs=123.4
Q ss_pred CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258 56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL 135 (331)
Q Consensus 56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 135 (331)
+|++|++++|.+. .++...|..+++|++|++++|.+. .+|..+..+++|++|++++|.+....|..+..+++|++|++
T Consensus 255 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 4455555555554 344443444555555555555444 34444455555555555555554444444445555555555
Q ss_pred CccccccccccCCcchhcCCCCCcEEEcCCCCCCCC---cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccC
Q 036258 136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI---PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN 212 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 212 (331)
++|. +.+.++...+..+++|++|++++|.+..+ +..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 333 ~~n~---~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 333 KGNT---KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp CSCS---SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred CCCC---cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 3322 22223333333444455555554444422 23344444455555544444444444444444444444444
Q ss_pred CcccCccCCC------------------ccccccccccCCCCcEEEeeccccccc---CCchhhhccccccEEEeccCcc
Q 036258 213 NYLTTRSSTT------------------EWSFLSSLTNCIYLKVLGLHSNQLSGI---LPPLIGNFSDSLQQFYAYDCEL 271 (331)
Q Consensus 213 ~~l~~~~~~~------------------~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~L~l~~~~~ 271 (331)
|.+....... ....+..+..+++|++|++++|.+.+. .+..+..++ +|+.|++++|.+
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l 488 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLSFCDL 488 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT-TCCEEECTTSCC
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC-CccEEECCCCcc
Confidence 4443321000 001223344555555555555555431 112333333 555555555555
Q ss_pred cccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCC
Q 036258 272 KGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP 324 (331)
Q Consensus 272 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 324 (331)
++..|.++..+++|+.|++++|.+++..|+.+..+++| .|++++|.+++..|
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 55555555555555555555555555555555555555 55555555553333
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=238.21 Aligned_cols=263 Identities=22% Similarity=0.203 Sum_probs=228.1
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
+++++|++++|.++ .++...|..+++|++|+|++|.+.+..|..|.++++|++|++++|.++...+..|.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 57999999999998 66666668999999999999999988899999999999999999999966666789999999999
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCC
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~ 213 (331)
+++|..... ....+..+++|++|++++|.+..+ +..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 111 Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 111 ISENKIVIL----LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CTTSCCCEE----CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CCCCccccC----ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 977766533 233445899999999999998854 467899999999999999999887788999999999999999
Q ss_pred cccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCC
Q 036258 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN 293 (331)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 293 (331)
.+..+. +..+..+++|++|++++|...+.++....... +|+.|++++|.+++..+..+.++++|+.|++++|
T Consensus 187 ~i~~~~-------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 187 NINAIR-------DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CCCEEC-------TTCSCSCTTCCEEEEECCTTCCEECTTTTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred cCcEeC-------hhhcccCcccceeeCCCCccccccCcccccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 988743 34588999999999999988777777766665 9999999999998544467899999999999999
Q ss_pred CCcccCCcCccCCCCCCeEeccCCeeeecCCccccCC
Q 036258 294 DLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHW 330 (331)
Q Consensus 294 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~ 330 (331)
.+++..+..+..+++|++|++++|.+++..|..+.++
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred cCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence 9997777889999999999999999998778777654
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=8.2e-31 Score=226.04 Aligned_cols=233 Identities=27% Similarity=0.421 Sum_probs=209.0
Q ss_pred CCCcEEEccCCcccc--cCCccCcCCCCCCEEEccC-ccccccCCccccCcccccccccCccccccccccCCcchhcCCC
Q 036258 80 PSLEQLVLRSNGFFG--QIPLSLSKCTQLQHLWLEH-NKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLP 156 (331)
Q Consensus 80 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 156 (331)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+.++++|++|++++|... +.++..+. .++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---~~~p~~~~-~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS---GAIPDFLS-QIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE---EECCGGGG-GCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC---CcCCHHHh-CCC
Confidence 689999999999988 8899999999999999995 8998899999999999999999665543 44555444 899
Q ss_pred CCcEEEcCCCCCC-CCcccccCCCCCceeeCcCccccccCchhccCCC-CCCEEEccCCcccCccCCCccccccccccCC
Q 036258 157 NLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLR-FLSLLDLGNNYLTTRSSTTEWSFLSSLTNCI 234 (331)
Q Consensus 157 ~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~ 234 (331)
+|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..++ .|++|++++|.+.. ..+..+..++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-------~~~~~~~~l~ 198 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-------KIPPTFANLN 198 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-------ECCGGGGGCC
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-------cCChHHhCCc
Confidence 9999999999998 7888999999999999999999988899999988 99999999999986 3566677777
Q ss_pred CCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEec
Q 036258 235 YLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFL 314 (331)
Q Consensus 235 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 314 (331)
|++|++++|.+.+..|..+..++ +|+.|++++|.+.+..|. +..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 199 -L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASVLFGSDK-NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp -CSEEECCSSEEEECCGGGCCTTS-CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred -ccEEECcCCcccCcCCHHHhcCC-CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 99999999999988888888777 999999999999866555 888999999999999999999999999999999999
Q ss_pred cCCeeeecCCcc
Q 036258 315 FGNNLQGSIPSD 326 (331)
Q Consensus 315 ~~n~~~~~~p~~ 326 (331)
++|+++|.+|+.
T Consensus 276 s~N~l~~~ip~~ 287 (313)
T 1ogq_A 276 SFNNLCGEIPQG 287 (313)
T ss_dssp CSSEEEEECCCS
T ss_pred cCCcccccCCCC
Confidence 999999999975
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.5e-30 Score=229.07 Aligned_cols=256 Identities=19% Similarity=0.193 Sum_probs=135.5
Q ss_pred CCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCcccc
Q 036258 46 LTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIG 125 (331)
Q Consensus 46 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 125 (331)
++...|..+++|++|++++|.+. .++...|..+++|++|++++|.+.+..|..|+.+++|++|++++|.++...+..+.
T Consensus 60 l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 138 (390)
T 3o6n_A 60 LPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138 (390)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhc
Confidence 33344556666666666666665 44444445666666666666666555555566666666666666666533333345
Q ss_pred CcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccC-ch-------
Q 036258 126 NLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLV-PN------- 197 (331)
Q Consensus 126 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~------- 197 (331)
.+++|++|++++|.... ++...+..+++|++|++++|.++.++ +..+++|+.+++++|.+.... +.
T Consensus 139 ~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l 212 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLER----IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDA 212 (390)
T ss_dssp TCTTCCEEECCSSCCCB----CCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEEC
T ss_pred CCCCCcEEECCCCccCc----cChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEEC
Confidence 56666666665444432 22222335566666666666655432 222333333333333222100 00
Q ss_pred --------hccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccC
Q 036258 198 --------TFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDC 269 (331)
Q Consensus 198 --------~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 269 (331)
.....++|++|++++|.+.. ...+..+++|++|++++|.+.+..|..+..++ +|+.|++++|
T Consensus 213 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~---------~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n 282 (390)
T 3o6n_A 213 SHNSINVVRGPVNVELTILKLQHNNLTD---------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNN 282 (390)
T ss_dssp CSSCCCEEECCCCSSCCEEECCSSCCCC---------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS-SCCEEECCSS
T ss_pred CCCeeeeccccccccccEEECCCCCCcc---------cHHHcCCCCccEEECCCCcCCCcChhHccccc-cCCEEECCCC
Confidence 00011234444444444432 12355666666666666666665566665555 6666666666
Q ss_pred cccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258 270 ELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320 (331)
Q Consensus 270 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 320 (331)
.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++
T Consensus 283 ~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 283 RLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp CCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred cCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 6653 4444555666666666666666 45555555666666666666665
No 11
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.4e-29 Score=220.21 Aligned_cols=242 Identities=21% Similarity=0.315 Sum_probs=122.4
Q ss_pred CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258 56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL 135 (331)
Q Consensus 56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 135 (331)
++++++++++.+. .+|..+ .+++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4556666665555 555433 345666666666655444445556666666666666655444555566666666666
Q ss_pred CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccc--cCchhccCCCCCCEEEccC
Q 036258 136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSG--LVPNTFGNLRFLSLLDLGN 212 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~ 212 (331)
++|....+ +..+ .++|++|++++|.+..++ ..+..+++|+.|++++|.+.. ..+..+..+++|++|++++
T Consensus 108 s~n~l~~l----~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 108 SKNQLKEL----PEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp CSSCCSBC----CSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred CCCcCCcc----Chhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 55444322 2221 145555555555555443 335555555555555555532 3344455555555555555
Q ss_pred CcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccC
Q 036258 213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD 292 (331)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 292 (331)
|.+..++.. + .++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 181 n~l~~l~~~--------~--~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 181 TNITTIPQG--------L--PPSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp SCCCSCCSS--------C--CTTCSEEECTTSCCCEECTGGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred CccccCCcc--------c--cccCCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 555543211 1 13445555555544444444444443 455555555544444444444444555555555
Q ss_pred CCCcccCCcCccCCCCCCeEeccCCeee
Q 036258 293 NDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320 (331)
Q Consensus 293 n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 320 (331)
|.++ .+|..+..+++|++|++++|+++
T Consensus 250 N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 250 NKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp SCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred CcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 5444 44444444445555555555544
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3.8e-30 Score=241.59 Aligned_cols=275 Identities=25% Similarity=0.286 Sum_probs=201.3
Q ss_pred CCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCC
Q 036258 42 PYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLP 121 (331)
Q Consensus 42 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 121 (331)
....++...|.++++|++|++++|.++ .+|..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred ccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 344455556788888888888888887 777765 667888888888887776656666677777777777766553333
Q ss_pred c-cccCcccccccccCcccccccc----------------------ccCCcchhcCCCCCcEEEcCCCCCCCC-c-cccc
Q 036258 122 E-NIGNLSKLRSLVLGHKAHNSLH----------------------GHLPSTLSVSLPNLKWLALGMNKLRTI-P-NSIT 176 (331)
Q Consensus 122 ~-~~~~l~~L~~L~l~~~~~~~~~----------------------~~~~~~~~~~l~~L~~L~l~~~~l~~~-~-~~~~ 176 (331)
. .+..+++|++|++++|...... ..++...+..+++|++|++++|.+... + ..+.
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 3 3555666666666554433221 011122333566666666666665532 2 3366
Q ss_pred CCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhh
Q 036258 177 NASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGN 256 (331)
Q Consensus 177 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 256 (331)
.+++|+.|++++|.+.+..+..+..+++|++|++++|.+..... ..+..+..+++|++|++++|.+.+..|..+..
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 498 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI----QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE----CSSCGGGGCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc----ccchhhccCCCccEEECCCCccCccChhhhcc
Confidence 67777777777777766666777777788888888887764210 12245888999999999999999888888888
Q ss_pred ccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCC
Q 036258 257 FSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP 324 (331)
Q Consensus 257 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 324 (331)
++ +|+.|++++|++++..|..+..++.| .|++++|.+++..|..+..+++|+.|++++|+++..++
T Consensus 499 l~-~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 499 LK-MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CT-TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cc-CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 87 99999999999999999999999999 99999999998778888999999999999999997765
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=4.9e-30 Score=240.86 Aligned_cols=169 Identities=21% Similarity=0.197 Sum_probs=90.8
Q ss_pred CCCcEEEcCCCCCCCC---cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccC-CC---------
Q 036258 156 PNLKWLALGMNKLRTI---PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSS-TT--------- 222 (331)
Q Consensus 156 ~~L~~L~l~~~~l~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~--------- 222 (331)
++|++|++++|.+... +..+..+++|++|++++|.+... +..+..+++|++|++++|.+..... ..
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 4455555555544422 44455566677777777666543 3455556666666666665554311 00
Q ss_pred --------ccccccccccCCCCcEEEeecccccc-cCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCC
Q 036258 223 --------EWSFLSSLTNCIYLKVLGLHSNQLSG-ILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN 293 (331)
Q Consensus 223 --------~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 293 (331)
....+..+..+++|++|++++|.+.+ ..|..+..++ +|+.|++++|.+++..|..+.++++|++|++++|
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT-NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC-CCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 00123334455555555555555554 2444444444 5666666666665555555566666666666666
Q ss_pred CCcccCCcCccCCCCCCeEeccCCeeeecCCccc
Q 036258 294 DLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327 (331)
Q Consensus 294 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~ 327 (331)
.+++..|..+..+++|++|++++|+++ .+|+.+
T Consensus 508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~ 540 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL 540 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG
T ss_pred cCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH
Confidence 665555555556666666666666655 555543
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.1e-30 Score=245.92 Aligned_cols=266 Identities=21% Similarity=0.287 Sum_probs=156.3
Q ss_pred hhcCCCCccEEEcCCCc-Ccc-CCChhhhcCC------CCCcEEEccCCcccccCCc--cCcCCCCCCEEEccCcccccc
Q 036258 50 CFYNISSLKMIRLSSNS-LSG-SLPNDLCNRL------PSLEQLVLRSNGFFGQIPL--SLSKCTQLQHLWLEHNKFTGR 119 (331)
Q Consensus 50 ~~~~~~~L~~L~l~~~~-i~~-~~~~~~~~~~------~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~~~~~ 119 (331)
.|.++++|++|++++|. +++ .+|..+ ..+ ++|++|++++|.+. .+|. .++.+++|++|++++|.+++.
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred HHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence 45666666666666665 654 455544 222 56666666666665 5555 566666666666666666655
Q ss_pred CCccccCcccccccccCccccccccccCCcchhcCCCC-CcEEEcCCCCCCCCcccccCCC--CCceeeCcCccccccCc
Q 036258 120 LPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPN-LKWLALGMNKLRTIPNSITNAS--ELTLLELGKNSFSGLVP 196 (331)
Q Consensus 120 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~~~~~~~~l~--~L~~L~l~~n~~~~~~~ 196 (331)
+| .+..+++|++|++++|... .++..+. .+++ |++|++++|.+..+|..+.... +|+.|++++|.+.+..|
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~----~lp~~l~-~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQIT----EIPANFC-GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEE----ECCTTSE-EECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred hh-hhCCCCCCCEEECCCCccc----cccHhhh-hhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcch
Confidence 55 5556666666666544433 2333322 4555 6666666666665554444332 45555555554444333
Q ss_pred hh-------------------------------ccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeeccc
Q 036258 197 NT-------------------------------FGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ 245 (331)
Q Consensus 197 ~~-------------------------------l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 245 (331)
.. +..+++|++|++++|.+..++..........+.++++|++|++++|.
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence 33 33445555555555555543322100000111223377777777777
Q ss_pred ccccCCchhh--hccccccEEEeccCcccccCCccccCCCCCCEEEc------cCCCCcccCCcCccCCCCCCeEeccCC
Q 036258 246 LSGILPPLIG--NFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRL------QDNDLNGTIPTTVGRLQQLQGLFLFGN 317 (331)
Q Consensus 246 ~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l------~~n~l~~~~~~~l~~l~~L~~L~l~~n 317 (331)
+. .+|..+. .++ +|+.|++++|.+++ +|..+..+++|+.|++ ++|.+.+.+|..+..+++|++|++++|
T Consensus 500 l~-~lp~~~~~~~l~-~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 500 LT-KLSDDFRATTLP-YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp CC-BCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred CC-ccChhhhhccCC-CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 76 5666655 444 77777777777775 7777777777888877 456666677777777788888888888
Q ss_pred eeeecCCccc
Q 036258 318 NLQGSIPSDL 327 (331)
Q Consensus 318 ~~~~~~p~~~ 327 (331)
.+ +.+|..+
T Consensus 577 ~l-~~ip~~~ 585 (636)
T 4eco_A 577 DI-RKVNEKI 585 (636)
T ss_dssp CC-CBCCSCC
T ss_pred cC-CccCHhH
Confidence 87 4777654
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.4e-29 Score=237.68 Aligned_cols=98 Identities=18% Similarity=0.075 Sum_probs=51.4
Q ss_pred ccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccc-cCCccccCCCCCCEEEccCCCCcccCCcCccCCCCC
Q 036258 231 TNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKG-SIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQL 309 (331)
Q Consensus 231 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 309 (331)
..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+ .+|..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hccccCCEEECcCCCCCccchhhhcCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 3344444444444444444444444443 55555555555554 245555555556666666665555555555556666
Q ss_pred CeEeccCCeeeecCCccccC
Q 036258 310 QGLFLFGNNLQGSIPSDLCH 329 (331)
Q Consensus 310 ~~L~l~~n~~~~~~p~~~~~ 329 (331)
++|++++|++++.+|..+.+
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~ 519 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQ 519 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTT
T ss_pred CEEECCCCcCCCcCHHHccC
Confidence 66666666665555555544
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=4.1e-30 Score=222.96 Aligned_cols=266 Identities=21% Similarity=0.284 Sum_probs=180.1
Q ss_pred cCChhhHHHHHHHHHhc-cCCCCCCCcch-------------------------hcCCCCccEEEcCCCcCccCCChhhh
Q 036258 23 KNITTDQSALLAFKAHI-ADPYSVLTKNC-------------------------FYNISSLKMIRLSSNSLSGSLPNDLC 76 (331)
Q Consensus 23 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~-------------------------~~~~~~L~~L~l~~~~i~~~~~~~~~ 76 (331)
.+...++.++..|+..+ .++......|| ....+++++|+++++.+. .+|..+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l- 100 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA- 100 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG-
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh-
Confidence 34567788999999877 36655555664 123467778888887777 777766
Q ss_pred cCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCC
Q 036258 77 NRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLP 156 (331)
Q Consensus 77 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 156 (331)
..+++|++|++++|.+. .+|..++.+++|++|++++|.++ .+|..+..+++|++|++++|. ..+.++..+. .
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~---~~~~~p~~~~-~-- 172 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP---ELTELPEPLA-S-- 172 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEET---TCCCCCSCSE-E--
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCC---CccccChhHh-h--
Confidence 34778888888887776 66777777788888888887777 667777777777777775432 2223333221 0
Q ss_pred CCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCC
Q 036258 157 NLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYL 236 (331)
Q Consensus 157 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L 236 (331)
. .++..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+.. ++..+..+++|
T Consensus 173 ----~--------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~--------l~~~l~~l~~L 231 (328)
T 4fcg_A 173 ----T--------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA--------LGPAIHHLPKL 231 (328)
T ss_dssp ----E--------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC--------CCGGGGGCTTC
T ss_pred ----c--------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc--------CchhhccCCCC
Confidence 0 11122444666777777776666 445556666777777777776664 23346667777
Q ss_pred cEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccC
Q 036258 237 KVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFG 316 (331)
Q Consensus 237 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 316 (331)
++|++++|.+.+.+|..+..++ +|+.|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+..+++|+.+++..
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCC-CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CEEECcCCcchhhhHHHhcCCC-CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 7777777777667777666665 777777777777777777777777888888888777777777777777788777776
Q ss_pred Ceee
Q 036258 317 NNLQ 320 (331)
Q Consensus 317 n~~~ 320 (331)
+.+.
T Consensus 311 ~~~~ 314 (328)
T 4fcg_A 311 HLQA 314 (328)
T ss_dssp GGSC
T ss_pred HHHH
Confidence 6654
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=8e-30 Score=240.08 Aligned_cols=251 Identities=22% Similarity=0.263 Sum_probs=190.7
Q ss_pred hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCC-CCEEEccCccccccCCccccCcc
Q 036258 50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQ-LQHLWLEHNKFTGRLPENIGNLS 128 (331)
Q Consensus 50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~ 128 (331)
.|.++++|++|++++|.+.+.+| .|..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~ 400 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS 400 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTC
T ss_pred hhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcc
Confidence 56667777777777777766666 3366677777777777666 56666777777 777777777776 5666655543
Q ss_pred --cccccccCccccccccccCCcchh------cCCCCCcEEEcCCCCCCCCccc-ccCCCCCceeeCcCccccccCchhc
Q 036258 129 --KLRSLVLGHKAHNSLHGHLPSTLS------VSLPNLKWLALGMNKLRTIPNS-ITNASELTLLELGKNSFSGLVPNTF 199 (331)
Q Consensus 129 --~L~~L~l~~~~~~~~~~~~~~~~~------~~l~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l 199 (331)
+|++|++++|.... ..+..+. ..+++|++|++++|.+..+|.. +..+++|++|++++|.+....+..+
T Consensus 401 l~~L~~L~Ls~N~l~~---~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 401 VSVMSAIDFSYNEIGS---VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp SSCEEEEECCSSCTTT---TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred cCccCEEECcCCcCCC---cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 67777775554432 2221111 0456899999999999988754 4568999999999999985544444
Q ss_pred cCC-------CCCCEEEccCCcccCccCCCccccccccc--cCCCCcEEEeecccccccCCchhhhccccccEEEe----
Q 036258 200 GNL-------RFLSLLDLGNNYLTTRSSTTEWSFLSSLT--NCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYA---- 266 (331)
Q Consensus 200 ~~~-------~~L~~L~l~~~~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l---- 266 (331)
... ++|++|++++|.+.. ++..+. .+++|++|++++|.+.+ +|..+..++ +|+.|++
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~~--------lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~-~L~~L~Ls~N~ 547 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLTK--------LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS-TLKGFGIRNQR 547 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCCB--------CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS-SCCEEECCSCB
T ss_pred ccccccccccCCccEEECcCCcCCc--------cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCC-CCCEEECCCCc
Confidence 433 389999999999985 344465 89999999999999996 888888876 9999999
Q ss_pred --ccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258 267 --YDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320 (331)
Q Consensus 267 --~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 320 (331)
++|.+.+.+|..+..+++|+.|++++|.+. .+|..+. ++|+.|++++|++.
T Consensus 548 ~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred ccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 567788899999999999999999999995 8888766 79999999999876
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2e-29 Score=219.32 Aligned_cols=251 Identities=22% Similarity=0.290 Sum_probs=145.2
Q ss_pred CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258 56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL 135 (331)
Q Consensus 56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 135 (331)
+++.++++++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5677777777776 666644 356777777777776665666777777777777777777666667777777777777
Q ss_pred CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccc--cCchhccCCCCCCEEEccC
Q 036258 136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSG--LVPNTFGNLRFLSLLDLGN 212 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~ 212 (331)
++|.... ++..++ ++|++|++++|.+..++ ..+..+++|++|++++|.+.. ..+..+..+ +|++|++++
T Consensus 110 ~~n~l~~----l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 110 SKNHLVE----IPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp CSSCCCS----CCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred CCCcCCc----cCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 6655543 233222 56777777777766555 346667777777777776642 444555555 566666666
Q ss_pred CcccCccCCCc--------------cccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCcc
Q 036258 213 NYLTTRSSTTE--------------WSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQE 278 (331)
Q Consensus 213 ~~l~~~~~~~~--------------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 278 (331)
|.+..++.... ...+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+. .+|..
T Consensus 182 n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~-~lp~~ 259 (332)
T 2ft3_A 182 AKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLS-RVPAG 259 (332)
T ss_dssp SBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-TCCEEECCSSCCC-BCCTT
T ss_pred CCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-CCCEEECCCCcCe-ecChh
Confidence 65554322100 01122344555555555555555544444444444 5555555555555 45555
Q ss_pred ccCCCCCCEEEccCCCCcccCCcCccC------CCCCCeEeccCCeee
Q 036258 279 IGNLNGLIDLRLQDNDLNGTIPTTVGR------LQQLQGLFLFGNNLQ 320 (331)
Q Consensus 279 l~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~~~ 320 (331)
+..+++|+.|++++|.+++..+..|.. .++|+.|++++|++.
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 555555555555555555333333332 234555555555544
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=5.5e-29 Score=225.50 Aligned_cols=248 Identities=22% Similarity=0.255 Sum_probs=218.5
Q ss_pred CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258 56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL 135 (331)
Q Consensus 56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 135 (331)
..+.++.++..++ .+|..+ .+++++|+|++|.+.+..+..|..+++|++|++++|.++...+..|.++++|++|++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 4578999999998 899766 579999999999999888899999999999999999999888889999999999999
Q ss_pred CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcC-ccccccCchhccCCCCCCEEEccCC
Q 036258 136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGK-NSFSGLVPNTFGNLRFLSLLDLGNN 213 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~~ 213 (331)
++|... .++...+..+++|++|++++|.+..++ ..+..+++|+.|++++ +.+....+..+..+++|++|++++|
T Consensus 131 ~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 131 FDNWLT----VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp CSSCCS----BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCCcCC----ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 877665 445555668999999999999999766 5788999999999998 4555555667899999999999999
Q ss_pred cccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCC
Q 036258 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN 293 (331)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 293 (331)
.+..++ .+..+++|++|++++|.+.+..|..+..+. +|+.|++++|.+.+..+..+.++++|+.|++++|
T Consensus 207 ~l~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 207 NIKDMP---------NLTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp CCSSCC---------CCTTCTTCCEEECTTSCCSEECGGGGTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccccc---------cccccccccEEECcCCcCcccCcccccCcc-CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 998642 377899999999999999988888888887 9999999999999888999999999999999999
Q ss_pred CCcccCCcCccCCCCCCeEeccCCeeee
Q 036258 294 DLNGTIPTTVGRLQQLQGLFLFGNNLQG 321 (331)
Q Consensus 294 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 321 (331)
.+++..+..+..+++|+.|++++|++.-
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 277 NLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cCCccChHHhccccCCCEEEccCCCcCC
Confidence 9996666778899999999999999763
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.5e-29 Score=223.55 Aligned_cols=264 Identities=18% Similarity=0.193 Sum_probs=208.4
Q ss_pred CCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC
Q 036258 41 DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL 120 (331)
Q Consensus 41 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 120 (331)
+....++...|..+++|++|++++|.+. .++...|..+++|++|++++|.+....+..|..+++|++|++++|.+....
T Consensus 79 n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 79 LQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 3445555567999999999999999998 676666789999999999999998555555789999999999999999777
Q ss_pred CccccCcccccccccCccccccccccCCcch------------hcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcC
Q 036258 121 PENIGNLSKLRSLVLGHKAHNSLHGHLPSTL------------SVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGK 188 (331)
Q Consensus 121 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~------------~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~ 188 (331)
+..+..+++|++|++++|............+ ....++|++|++++|.+..++.. ..++|+.|++++
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~ 235 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQH 235 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCS
T ss_pred hhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCC
Confidence 8889999999999998877665421100000 01223455555555555544332 246899999999
Q ss_pred ccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEecc
Q 036258 189 NSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYD 268 (331)
Q Consensus 189 n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 268 (331)
|.+.+. ..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+ ++..+..++ +|+.|++++
T Consensus 236 n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~-~L~~L~L~~ 304 (390)
T 3o6n_A 236 NNLTDT--AWLLNYPGLVEVDLSYNELEKI-------MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP-TLKVLDLSH 304 (390)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCEE-------ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT-TCCEEECCS
T ss_pred CCCccc--HHHcCCCCccEEECCCCcCCCc-------ChhHccccccCCEEECCCCcCcc-cCcccCCCC-CCCEEECCC
Confidence 988754 5688899999999999998863 45668899999999999999984 455555555 999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeec
Q 036258 269 CELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGS 322 (331)
Q Consensus 269 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 322 (331)
|.+. .+|..+..+++|+.|++++|.++ .++ +..+++|+.|++++|+++..
T Consensus 305 n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 305 NHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEHH
T ss_pred Ccce-ecCccccccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCccch
Confidence 9998 67888889999999999999998 444 67889999999999999754
No 21
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.8e-29 Score=217.18 Aligned_cols=251 Identities=21% Similarity=0.194 Sum_probs=180.6
Q ss_pred ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccc--cCCccccCcccccccc
Q 036258 57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTG--RLPENIGNLSKLRSLV 134 (331)
Q Consensus 57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~ 134 (331)
.+.++++++.++ .+|..+ .++|++|++++|.+....+..|..+++|++|++++|.++. ..+..+..+++|++|+
T Consensus 9 ~~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CCEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 356777777776 777644 3677888888877764444456777888888888777662 2245566677788888
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc--ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccC
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP--NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN 212 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 212 (331)
+++|....+ +.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 85 Ls~n~i~~l----~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 85 LSFNGVITM----SSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CCSCSEEEE----EEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred CCCCccccC----hhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 866655432 222 236778888888888777554 3677778888888888887777777777788888888888
Q ss_pred CcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccC
Q 036258 213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD 292 (331)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 292 (331)
|.+... ..+..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 160 n~l~~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 160 NSFQEN------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp CEEGGG------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred Cccccc------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC-CCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence 877641 2455577788888888888888766677776665 888888888888766666777788888888888
Q ss_pred CCCcccCCcCccCCC-CCCeEeccCCeeeecC
Q 036258 293 NDLNGTIPTTVGRLQ-QLQGLFLFGNNLQGSI 323 (331)
Q Consensus 293 n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~ 323 (331)
|.+.+..+..+..++ +|++|++++|++++..
T Consensus 233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp SCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 888877777777774 7888888888887543
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.8e-29 Score=236.29 Aligned_cols=255 Identities=19% Similarity=0.189 Sum_probs=130.4
Q ss_pred CcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccC
Q 036258 47 TKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGN 126 (331)
Q Consensus 47 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 126 (331)
+...|.++++|++|++++|.+. .++...|..+++|++|+|++|.+.+..|..|+.+++|++|++++|.++...+..|..
T Consensus 67 p~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 145 (597)
T 3oja_B 67 PAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145 (597)
T ss_dssp CTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence 3334555555666666665555 333333355566666666665555555555555566666666666555333333455
Q ss_pred cccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccC-chh-------
Q 036258 127 LSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLV-PNT------- 198 (331)
Q Consensus 127 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~------- 198 (331)
+++|++|++++|.... ++...+..+++|++|++++|.+..++ +..+++|+.|++++|.+.+.. +..
T Consensus 146 l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 146 TPKLTTLSMSNNNLER----IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp CTTCCEEECCSSCCCB----CCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred CCCCCEEEeeCCcCCC----CChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 5566666664443322 22222235555666666655555332 222333333333333222100 000
Q ss_pred --------ccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCc
Q 036258 199 --------FGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCE 270 (331)
Q Consensus 199 --------l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 270 (331)
....++|+.|++++|.+.. +..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.
T Consensus 220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~---------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~ 289 (597)
T 3oja_B 220 HNSINVVRGPVNVELTILKLQHNNLTD---------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNR 289 (597)
T ss_dssp SSCCCEEECSCCSCCCEEECCSSCCCC---------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS-SCCEEECTTSC
T ss_pred CCcccccccccCCCCCEEECCCCCCCC---------ChhhccCCCCCEEECCCCccCCCCHHHhcCcc-CCCEEECCCCC
Confidence 0001223333333333332 23355666666666666666666666666555 66666666666
Q ss_pred ccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258 271 LKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320 (331)
Q Consensus 271 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 320 (331)
+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++
T Consensus 290 l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 290 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp CCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred CCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 663 4555555666666666666666 45555555666666666666665
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=7.8e-29 Score=223.77 Aligned_cols=247 Identities=23% Similarity=0.271 Sum_probs=218.0
Q ss_pred CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258 56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL 135 (331)
Q Consensus 56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 135 (331)
..+.++.++..++ .+|..+ .++++.|+|++|.+....+..|.++++|++|++++|.++...+..|.++++|++|++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4578999999998 899866 578999999999999888889999999999999999999777789999999999999
Q ss_pred CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCc-cccccCchhccCCCCCCEEEccCC
Q 036258 136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKN-SFSGLVPNTFGNLRFLSLLDLGNN 213 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~~ 213 (331)
++|... .++...+..+++|++|++++|.+..++ ..+..+++|++|++++| .+....+..|..+++|++|++++|
T Consensus 120 ~~n~l~----~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 120 FDNRLT----TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp CSSCCS----SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred CCCcCC----eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 877665 444555668999999999999998766 57889999999999984 555555668999999999999999
Q ss_pred cccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCC
Q 036258 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN 293 (331)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 293 (331)
.++.++ .+..+++|++|++++|.+.+..+..+..+. +|+.|++++|.+.+..+..+.++++|+.|++++|
T Consensus 196 ~l~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 196 NLREIP---------NLTPLIKLDELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp CCSSCC---------CCTTCSSCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred cCcccc---------ccCCCcccCEEECCCCccCccChhhhccCc-cCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 998643 378899999999999999988888888887 9999999999999888999999999999999999
Q ss_pred CCcccCCcCccCCCCCCeEeccCCeee
Q 036258 294 DLNGTIPTTVGRLQQLQGLFLFGNNLQ 320 (331)
Q Consensus 294 ~l~~~~~~~l~~l~~L~~L~l~~n~~~ 320 (331)
.+++..+..+..+++|+.|++++|++.
T Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 266 NLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCccChhHhccccCCCEEEcCCCCcc
Confidence 999766677889999999999999986
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.4e-28 Score=213.75 Aligned_cols=246 Identities=20% Similarity=0.301 Sum_probs=204.1
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
+.+++|++++|.++ .++...|..+++|++|++++|.+.+..|..|..+++|++|++++|.++ .+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 68999999999998 677766689999999999999998887889999999999999999988 5665554 7899999
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCCCCCC---CCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEcc
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR---TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLG 211 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 211 (331)
+++|... .++...+..+++|++|++++|.+. ..+..+..+++|++|++++|.+... |..+. ++|++|+++
T Consensus 128 l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~ 200 (330)
T 1xku_A 128 VHENEIT----KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGLP--PSLTELHLD 200 (330)
T ss_dssp CCSSCCC----BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSCC--TTCSEEECT
T ss_pred CCCCccc----ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Ccccc--ccCCEEECC
Confidence 9776655 344555668999999999999886 3457788899999999999998754 33332 789999999
Q ss_pred CCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEcc
Q 036258 212 NNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQ 291 (331)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 291 (331)
+|.+... .+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.++ .+|.++..+++|+.|+++
T Consensus 201 ~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 201 GNKITKV-------DAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TSCCCEE-------CTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred CCcCCcc-------CHHHhcCCCCCCEEECCCCcCceeChhhccCCC-CCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence 9988863 345688899999999999999877777777776 9999999999998 788889999999999999
Q ss_pred CCCCcccCCcCccC------CCCCCeEeccCCeee
Q 036258 292 DNDLNGTIPTTVGR------LQQLQGLFLFGNNLQ 320 (331)
Q Consensus 292 ~n~l~~~~~~~l~~------l~~L~~L~l~~n~~~ 320 (331)
+|.+++..+..|.. .++++.+++++|++.
T Consensus 272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 99999655556643 367899999999975
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=6.4e-29 Score=241.21 Aligned_cols=276 Identities=21% Similarity=0.178 Sum_probs=176.2
Q ss_pred CCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC
Q 036258 41 DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL 120 (331)
Q Consensus 41 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 120 (331)
+....+....|.++++|++|++++|...+.++...|..+++|++|+|++|.+.+..|..|+++++|++|++++|.+++..
T Consensus 34 N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 113 (844)
T 3j0a_A 34 NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113 (844)
T ss_dssp CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccc
Confidence 44455555568888889999998886555776666688888999999888888777888888888999999888887655
Q ss_pred Ccc--ccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC-CcccccCC--CCCceeeCcCccccccC
Q 036258 121 PEN--IGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT-IPNSITNA--SELTLLELGKNSFSGLV 195 (331)
Q Consensus 121 ~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~l--~~L~~L~l~~n~~~~~~ 195 (331)
+.. +.++++|++|++++|.... ..+...+..+++|++|++++|.+.. .+..+..+ ++|+.|++++|.+.+..
T Consensus 114 ~~~~~~~~L~~L~~L~Ls~N~l~~---~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~ 190 (844)
T 3j0a_A 114 LKDGYFRNLKALTRLDLSKNQIRS---LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190 (844)
T ss_dssp STTCCCSSCSSCCEEEEESCCCCC---CCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred ccCccccccCCCCEEECCCCcccc---cccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc
Confidence 554 7888888888886655543 2233344578888888888888763 33445444 56666666666555444
Q ss_pred chhccCCCC------CCEEEccCCcccCccCCC-----------------------------------------------
Q 036258 196 PNTFGNLRF------LSLLDLGNNYLTTRSSTT----------------------------------------------- 222 (331)
Q Consensus 196 ~~~l~~~~~------L~~L~l~~~~l~~~~~~~----------------------------------------------- 222 (331)
+..+..+.+ |++|++++|.+.......
T Consensus 191 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~ 270 (844)
T 3j0a_A 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270 (844)
T ss_dssp CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCE
T ss_pred ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccE
Confidence 433333332 555555555332110000
Q ss_pred --------ccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCC
Q 036258 223 --------EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDND 294 (331)
Q Consensus 223 --------~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 294 (331)
....+..+..+++|++|++++|.+.+..+..+..+. +|++|++++|.+.+..|..+.++++|+.|++++|.
T Consensus 271 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349 (844)
T ss_dssp EECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC
T ss_pred EECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC
Confidence 001223355566666666666666655555555554 66666666666665556666666666666666666
Q ss_pred CcccCCcCccCCCCCCeEeccCCeee
Q 036258 295 LNGTIPTTVGRLQQLQGLFLFGNNLQ 320 (331)
Q Consensus 295 l~~~~~~~l~~l~~L~~L~l~~n~~~ 320 (331)
+.+..+..|..+++|+.|++++|.++
T Consensus 350 i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 350 IAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCccChhhhcCCCCCCEEECCCCCCC
Confidence 66444455666666666666666665
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=222.46 Aligned_cols=257 Identities=22% Similarity=0.267 Sum_probs=177.1
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
++|++|++++|.++ .++...|..+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+.++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 46777777777776 56655557777777777777777766666677777777777777777744444467777777777
Q ss_pred cCccccccccccCCc-chhcCCCCCcEEEcCCC-CCCCC-cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEcc
Q 036258 135 LGHKAHNSLHGHLPS-TLSVSLPNLKWLALGMN-KLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLG 211 (331)
Q Consensus 135 l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 211 (331)
+++|.... ++. ..+..+++|++|++++| .+..+ +..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 131 L~~n~l~~----l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 131 LLGNPYKT----LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp CTTCCCSS----SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred CCCCCCcc----cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 76655543 222 33446777777777776 35544 3566777777777777777776667777777777777777
Q ss_pred CCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhh--ccccccEEEeccCcccc----cCCccccCCCCC
Q 036258 212 NNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGN--FSDSLQQFYAYDCELKG----SIPQEIGNLNGL 285 (331)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L 285 (331)
+|.+...+ ...+..+++|++|++++|.+.+..+..+.. ....++.++++++.+.+ .+|.++..+++|
T Consensus 207 ~n~l~~~~-------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L 279 (353)
T 2z80_A 207 MKQHILLL-------EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279 (353)
T ss_dssp CSCSTTHH-------HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred CCccccch-------hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence 77765421 112344677777777777776544433321 12356666666666654 356778899999
Q ss_pred CEEEccCCCCcccCCcC-ccCCCCCCeEeccCCeeeecCC
Q 036258 286 IDLRLQDNDLNGTIPTT-VGRLQQLQGLFLFGNNLQGSIP 324 (331)
Q Consensus 286 ~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~p 324 (331)
+.|++++|.++ .+|.. +..+++|++|++++|++++.+|
T Consensus 280 ~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 280 LELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99999999999 66665 5899999999999999997765
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=7.3e-29 Score=231.19 Aligned_cols=88 Identities=26% Similarity=0.386 Sum_probs=44.3
Q ss_pred hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccc-cCCccccCccc
Q 036258 51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTG-RLPENIGNLSK 129 (331)
Q Consensus 51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~ 129 (331)
|.++++|++|++++|.+. .++...|..+++|++|++++|.+.+..+..++.+++|++|++++|.+.. .+|..+.++++
T Consensus 72 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 150 (570)
T 2z63_A 72 YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (570)
T ss_dssp TTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred ccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCC
Confidence 444444444444444444 3333333444444444444444443333335555566666666665553 24666666666
Q ss_pred ccccccCccc
Q 036258 130 LRSLVLGHKA 139 (331)
Q Consensus 130 L~~L~l~~~~ 139 (331)
|++|++++|.
T Consensus 151 L~~L~l~~n~ 160 (570)
T 2z63_A 151 LEHLDLSSNK 160 (570)
T ss_dssp CCEEECTTSC
T ss_pred CCEEeCcCCc
Confidence 6666666543
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.3e-28 Score=214.12 Aligned_cols=250 Identities=20% Similarity=0.243 Sum_probs=160.1
Q ss_pred hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258 51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL 130 (331)
Q Consensus 51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 130 (331)
|.++++|++|++++|.++ .++...|..+++|++|++++|.+. .+|..+. ++|++|++++|.++...+..+..+++|
T Consensus 74 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred hhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence 444444444444444444 222222244444444444444443 2222222 444444444444443333344555555
Q ss_pred cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEc
Q 036258 131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDL 210 (331)
Q Consensus 131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 210 (331)
++|++++|..... ......+..+ +|++|++++|.+..+|..+. ++|++|++++|.+.+..+..+..+++|++|++
T Consensus 150 ~~L~l~~n~l~~~--~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 150 NCIEMGGNPLENS--GFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp CEEECCSCCCBGG--GSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred CEEECCCCccccC--CCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 5555544433221 1111222233 55555555555555554332 68888888888888777788899999999999
Q ss_pred cCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccC------CCC
Q 036258 211 GNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGN------LNG 284 (331)
Q Consensus 211 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------l~~ 284 (331)
++|.+...+ +..+..+++|++|++++|.+. .+|..+..++ +|+.|++++|.+++..+..+.. .+.
T Consensus 225 ~~N~l~~~~-------~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 225 GHNQIRMIE-------NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK-LLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp CSSCCCCCC-------TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT-TCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred CCCcCCcCC-------hhHhhCCCCCCEEECCCCcCe-ecChhhhcCc-cCCEEECCCCCCCccChhHcccccccccccc
Confidence 999988743 335888999999999999998 7888888776 9999999999999766666654 367
Q ss_pred CCEEEccCCCCc--ccCCcCccCCCCCCeEeccCCe
Q 036258 285 LIDLRLQDNDLN--GTIPTTVGRLQQLQGLFLFGNN 318 (331)
Q Consensus 285 L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~ 318 (331)
|+.|++.+|++. +..|.++..+++|+.+++++|.
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 899999999987 5667788999999999999885
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.7e-28 Score=235.73 Aligned_cols=268 Identities=21% Similarity=0.283 Sum_probs=179.8
Q ss_pred chhcCCCCccEEEcCCCc-Ccc-CCChhhh------cCCCCCcEEEccCCcccccCCc--cCcCCCCCCEEEccCccccc
Q 036258 49 NCFYNISSLKMIRLSSNS-LSG-SLPNDLC------NRLPSLEQLVLRSNGFFGQIPL--SLSKCTQLQHLWLEHNKFTG 118 (331)
Q Consensus 49 ~~~~~~~~L~~L~l~~~~-i~~-~~~~~~~------~~~~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~~~~ 118 (331)
..|.++++|++|++++|. +++ .+|..+. ..+++|++|++++|.+. .+|. .++.+++|++|++++|.++
T Consensus 509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-
Confidence 357778888888888886 765 5665441 23447777777777776 6666 6777777777777777776
Q ss_pred cCCccccCcccccccccCccccccccccCCcchhcCCCC-CcEEEcCCCCCCCCcccccCCC------------------
Q 036258 119 RLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPN-LKWLALGMNKLRTIPNSITNAS------------------ 179 (331)
Q Consensus 119 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~~~~~~~~l~------------------ 179 (331)
.+| .+..+++|+.|++++|... .++..+. .+++ |++|++++|.+..+|..+..+.
T Consensus 587 ~lp-~~~~L~~L~~L~Ls~N~l~----~lp~~l~-~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 587 HLE-AFGTNVKLTDLKLDYNQIE----EIPEDFC-AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp BCC-CCCTTSEESEEECCSSCCS----CCCTTSC-EECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred cch-hhcCCCcceEEECcCCccc----cchHHHh-hccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence 566 6677777777777655544 3333332 4555 6666666666665554443332
Q ss_pred -------------CCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccc
Q 036258 180 -------------ELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQL 246 (331)
Q Consensus 180 -------------~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 246 (331)
+|+.|++++|.+....+..+..+++|++|++++|.+..++..........+.++++|++|+|++|.+
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L 740 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCC
T ss_pred ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCC
Confidence 4445555555554333333446677788888877777554331100111123445888888888888
Q ss_pred cccCCchhh--hccccccEEEeccCcccccCCccccCCCCCCEEEccC------CCCcccCCcCccCCCCCCeEeccCCe
Q 036258 247 SGILPPLIG--NFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD------NDLNGTIPTTVGRLQQLQGLFLFGNN 318 (331)
Q Consensus 247 ~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~------n~l~~~~~~~l~~l~~L~~L~l~~n~ 318 (331)
. .+|..+. .++ +|+.|+|++|.+.+ +|..+..+++|+.|++++ |.+.+.+|..+..+++|+.|++++|.
T Consensus 741 ~-~lp~~l~~~~l~-~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 741 T-SLSDDFRATTLP-YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp C-CCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred c-cchHHhhhccCC-CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 7 6777765 555 88899998888885 788888888899998866 67777888888888889999999998
Q ss_pred eeecCCcccc
Q 036258 319 LQGSIPSDLC 328 (331)
Q Consensus 319 ~~~~~p~~~~ 328 (331)
+ +.+|..+.
T Consensus 818 L-~~Ip~~l~ 826 (876)
T 4ecn_A 818 I-RKVDEKLT 826 (876)
T ss_dssp C-CBCCSCCC
T ss_pred C-CccCHhhc
Confidence 8 58887654
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=229.15 Aligned_cols=125 Identities=25% Similarity=0.373 Sum_probs=100.2
Q ss_pred CCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC
Q 036258 41 DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL 120 (331)
Q Consensus 41 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 120 (331)
+....+....|.++++|++|++++|.+. .++...|..+++|++|++++|.+.+..+..|+++++|++|++++|.++...
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 116 (570)
T 2z63_A 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116 (570)
T ss_dssp CCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred CccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC
Confidence 4455556667999999999999999998 677777799999999999999998888889999999999999999998655
Q ss_pred CccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCC
Q 036258 121 PENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR 169 (331)
Q Consensus 121 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 169 (331)
+..+.++++|++|++++|....+ .++..+ ..+++|++|++++|.+.
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~~--~lp~~~-~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 117 NFPIGHLKTLKELNVAHNLIQSF--KLPEYF-SNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TCSCTTCTTCCEEECCSSCCCCC--CCCGGG-GGCTTCCEEECTTSCCC
T ss_pred CccccccccccEEecCCCcccee--cChhhh-cccCCCCEEeCcCCccc
Confidence 55799999999999977665432 233333 36777777777776654
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3.2e-29 Score=240.70 Aligned_cols=164 Identities=20% Similarity=0.276 Sum_probs=127.4
Q ss_pred hhcCCCCccEEEcCCCcCcc-----------------CCChhh-hcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEc
Q 036258 50 CFYNISSLKMIRLSSNSLSG-----------------SLPNDL-CNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWL 111 (331)
Q Consensus 50 ~~~~~~~L~~L~l~~~~i~~-----------------~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 111 (331)
.|.++++|++|++++|.+++ .+|..+ |..+++|++|+|++|.+.+.+|..|+++++|++|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 58889999999999999986 288776 348999999999999988889999999999999999
Q ss_pred cCcc-ccc-cCCccccCcc-------cccccccCccccccccccCCc-chhcCCCCCcEEEcCCCCCCCCcccccCCCCC
Q 036258 112 EHNK-FTG-RLPENIGNLS-------KLRSLVLGHKAHNSLHGHLPS-TLSVSLPNLKWLALGMNKLRTIPNSITNASEL 181 (331)
Q Consensus 112 ~~n~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L 181 (331)
++|. +++ .+|..+..++ +|++|++++|... .+|. ..+..+++|++|++++|.+..+| .+..+++|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~----~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE----EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKL 597 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC----BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC----ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcc
Confidence 9997 876 6776665554 8888888666554 4454 23337788888888888877777 77777888
Q ss_pred ceeeCcCccccccCchhccCCCC-CCEEEccCCcccCcc
Q 036258 182 TLLELGKNSFSGLVPNTFGNLRF-LSLLDLGNNYLTTRS 219 (331)
Q Consensus 182 ~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~~~l~~~~ 219 (331)
+.|++++|.+. ..|..+..+++ |++|++++|.+..++
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCc
Confidence 88888888777 55666777777 777777777766543
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.2e-28 Score=229.31 Aligned_cols=95 Identities=29% Similarity=0.292 Sum_probs=62.9
Q ss_pred CCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccc-cC
Q 036258 42 PYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTG-RL 120 (331)
Q Consensus 42 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~ 120 (331)
....++...|.++++|++|++++|.++ .++...|..+++|++|++++|.+. .+|.. .+++|++|++++|.+++ ..
T Consensus 63 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~ 138 (562)
T 3a79_B 63 SISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPV 138 (562)
T ss_dssp CCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCC
T ss_pred CccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCc
Confidence 344444456777777777777777777 454444577777777777777776 34443 67777777777777764 23
Q ss_pred CccccCcccccccccCcccc
Q 036258 121 PENIGNLSKLRSLVLGHKAH 140 (331)
Q Consensus 121 ~~~~~~l~~L~~L~l~~~~~ 140 (331)
|..+.++++|++|++++|..
T Consensus 139 p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 139 CKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp CGGGGGCTTCCEEEEECSBC
T ss_pred hHhhcccCcccEEecCCCcc
Confidence 46677777777777766543
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=7.5e-29 Score=228.67 Aligned_cols=91 Identities=27% Similarity=0.343 Sum_probs=50.8
Q ss_pred CCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccc-cCCc
Q 036258 44 SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTG-RLPE 122 (331)
Q Consensus 44 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~ 122 (331)
..++...|.++++|++|++++|.++ .+++..|..+++|++|++++|.+. .+|.. .+++|++|++++|.+++ ..|.
T Consensus 34 ~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~ 109 (520)
T 2z7x_B 34 SELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICK 109 (520)
T ss_dssp CCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCG
T ss_pred cccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchh
Confidence 3344445666666666666666665 333333356666666666666665 23333 55666666666666553 2445
Q ss_pred cccCcccccccccCcc
Q 036258 123 NIGNLSKLRSLVLGHK 138 (331)
Q Consensus 123 ~~~~l~~L~~L~l~~~ 138 (331)
.+.++++|++|++++|
T Consensus 110 ~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 110 EFGNMSQLKFLGLSTT 125 (520)
T ss_dssp GGGGCTTCCEEEEEES
T ss_pred hhccCCcceEEEecCc
Confidence 5555555555555444
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=8.7e-29 Score=231.63 Aligned_cols=264 Identities=18% Similarity=0.196 Sum_probs=209.9
Q ss_pred CCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC
Q 036258 41 DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL 120 (331)
Q Consensus 41 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 120 (331)
+....++...|..+++|++|++++|.+. .++...|+.+++|++|++++|.+.+..+..|+.+++|++|++++|.+++..
T Consensus 85 n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 85 LQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence 4455556668999999999999999998 677777799999999999999998666666799999999999999999888
Q ss_pred CccccCcccccccccCccccccccccCCcch------------hcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcC
Q 036258 121 PENIGNLSKLRSLVLGHKAHNSLHGHLPSTL------------SVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGK 188 (331)
Q Consensus 121 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~------------~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~ 188 (331)
|..+..+++|++|++++|............+ ....++|++|++++|.+..++..+ .++|+.|++++
T Consensus 164 ~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~ 241 (597)
T 3oja_B 164 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQH 241 (597)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCS
T ss_pred hhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCC
Confidence 8889999999999998877664421100000 012234455555555554433322 35788999999
Q ss_pred ccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEecc
Q 036258 189 NSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYD 268 (331)
Q Consensus 189 n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 268 (331)
|.+.+. ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.+ +|..+..++ +|+.|++++
T Consensus 242 n~l~~~--~~l~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~-~L~~L~Ls~ 310 (597)
T 3oja_B 242 NNLTDT--AWLLNYPGLVEVDLSYNELEK-------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP-TLKVLDLSH 310 (597)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCE-------EESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT-TCCEEECCS
T ss_pred CCCCCC--hhhccCCCCCEEECCCCccCC-------CCHHHhcCccCCCEEECCCCCCCC-CCcccccCC-CCcEEECCC
Confidence 988753 678889999999999999987 346678999999999999999985 455555555 999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeec
Q 036258 269 CELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGS 322 (331)
Q Consensus 269 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 322 (331)
|.+. .+|..+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|++++.
T Consensus 311 N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 311 NHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCCh
Confidence 9998 688889999999999999999984 43 67789999999999999864
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=7.2e-28 Score=229.06 Aligned_cols=239 Identities=24% Similarity=0.301 Sum_probs=138.4
Q ss_pred CCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC
Q 036258 41 DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL 120 (331)
Q Consensus 41 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 120 (331)
+....++...|.++++|++|++++|.+. .++...|..+++|++|++++|.+.+..+..|+++++|++|++++|.+.+..
T Consensus 35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 35 NQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp SCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence 3444555556777777888888777776 444444567777888887777776554456777777777777777777555
Q ss_pred CccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccc--cCCCCCceeeCcCccccccCch
Q 036258 121 PENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSI--TNASELTLLELGKNSFSGLVPN 197 (331)
Q Consensus 121 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~--~~l~~L~~L~l~~n~~~~~~~~ 197 (331)
+..|.++++|++|++++|..... +...+..+++|++|++++|.++.++ ..+ ..+++|++|++++|.+.+..+.
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSST----KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCC----CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred hhHccccCCCCEEECCCCccccc----CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence 56777777777777765544322 2222336677777777777766544 222 2346677777777766655554
Q ss_pred hccCCC---------------------------CCCEEEccCCcccCccCCCccccccccccCCC--CcEEEeecccccc
Q 036258 198 TFGNLR---------------------------FLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIY--LKVLGLHSNQLSG 248 (331)
Q Consensus 198 ~l~~~~---------------------------~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~ 248 (331)
.+..++ +|++|++++|.+... .+..+..++. |++|++++|.+.+
T Consensus 190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~-------~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT-------SNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE-------CTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc-------ChhHhhccCcCCCCEEECCCCCcCc
Confidence 444332 334444444443331 1222333332 5555555555554
Q ss_pred cCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccC
Q 036258 249 ILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD 292 (331)
Q Consensus 249 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 292 (331)
..+..+..++ +|+.|++++|.+.+..|..+.++++|+.|++++
T Consensus 263 ~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 263 VGNDSFAWLP-QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp ECTTTTTTCT-TCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred cCcccccCcc-cccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 4444444444 555555555555544444444444444444443
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=226.16 Aligned_cols=128 Identities=21% Similarity=0.227 Sum_probs=99.2
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
++|++|++++|.+. .++...|..+++|++|++++|.+.+..|..|+.+++|++|++++|.++ .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 78999999999998 677666689999999999999999888889999999999999999998 56665 899999999
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCC--ceeeCcCccc
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASEL--TLLELGKNSF 191 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L--~~L~l~~n~~ 191 (331)
+++|....+ .++..+ ..+++|++|++++|.+.. ..+..+++| ++|++++|.+
T Consensus 97 L~~N~l~~~--~~p~~~-~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 97 LSFNAFDAL--PICKEF-GNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCSSCCSSC--CCCGGG-GGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred ccCCccccc--cchhhh-ccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 977765432 233333 478888888888887653 233444444 5555555544
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.7e-28 Score=208.95 Aligned_cols=262 Identities=21% Similarity=0.265 Sum_probs=199.3
Q ss_pred hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccc
Q 036258 50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK 129 (331)
Q Consensus 50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 129 (331)
|...-..-++++.++++++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++
T Consensus 6 C~C~~~~~~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 81 (285)
T 1ozn_A 6 CVCYNEPKVTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81 (285)
T ss_dssp CEEECSSSCEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred ceECCCCCeEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccC
Confidence 3333344578999999888 888654 679999999999998777778899999999999999998777888889999
Q ss_pred ccccccCccc-cccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCccccccCchhccCCCCCCE
Q 036258 130 LRSLVLGHKA-HNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSL 207 (331)
Q Consensus 130 L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 207 (331)
|++|++++|. .. .++...+..+++|++|++++|.+..+ +..+..+++|++|++++|.+....+..+..+++|++
T Consensus 82 L~~L~l~~n~~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 82 LEQLDLSDNAQLR----SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp CCEEECCSCTTCC----CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEeCCCCCCcc----ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence 9999996654 33 33334445788899999999888865 466788889999999999888777777888888999
Q ss_pred EEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCE
Q 036258 208 LDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLID 287 (331)
Q Consensus 208 L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 287 (331)
|++++|.++.++. ..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+++..+..+..+++|+.
T Consensus 158 L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 158 LFLHGNRISSVPE-------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQY 229 (285)
T ss_dssp EECCSSCCCEECT-------TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred EECCCCcccccCH-------HHhcCccccCEEECCCCcccccCHhHccCcc-cccEeeCCCCcCCcCCHHHcccCcccCE
Confidence 9999988876432 2477788899999999888877787777776 8888888888888655566888888888
Q ss_pred EEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCcccc
Q 036258 288 LRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLC 328 (331)
Q Consensus 288 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 328 (331)
|++++|++...-+ ...-...++.+....+.+....|+.+.
T Consensus 230 L~l~~N~~~c~~~-~~~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 230 LRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp EECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred EeccCCCccCCCC-cHHHHHHHHhcccccCccccCCchHhC
Confidence 9988888873221 111112345555666666666666543
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=6.2e-28 Score=229.49 Aligned_cols=269 Identities=20% Similarity=0.200 Sum_probs=153.7
Q ss_pred hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCc----------------------------ccccCCccCc
Q 036258 50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNG----------------------------FFGQIPLSLS 101 (331)
Q Consensus 50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~----------------------------i~~~~~~~~~ 101 (331)
.|..+++|++|++++|.+. .++...|..+++|++|++++|. +.+..|..|.
T Consensus 324 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTCTTCCEEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hcccCCCCCEEECCCCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 4556666666666666666 3444444556666666555543 3333334444
Q ss_pred CCCCCCEEEccCccccccCC-ccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCC---CCcccccC
Q 036258 102 KCTQLQHLWLEHNKFTGRLP-ENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR---TIPNSITN 177 (331)
Q Consensus 102 ~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~---~~~~~~~~ 177 (331)
.+++|++|++++|.+.+.++ ..+.++++|++|++++|... .+....+..+++|++|++.+|.+. .+|..+..
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL----QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE----ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc----eeChhhhhcCcccccchhccccccccccCCccccc
Confidence 44445555555544443232 34444445555555433322 122223334556666666655543 34556666
Q ss_pred CCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCC-ccccccccccCCCCcEEEeecccccccCCchhhh
Q 036258 178 ASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT-EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGN 256 (331)
Q Consensus 178 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 256 (331)
+++|+.|++++|.+.+..+..+..+++|++|++++|.+..+.... .......+..+++|++|++++|.+....+..+..
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 777777777777776666666677777777777777666543220 0001123566777777777777776333334555
Q ss_pred ccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCcc-CCCCCCeEeccCCeeeecCC
Q 036258 257 FSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVG-RLQQLQGLFLFGNNLQGSIP 324 (331)
Q Consensus 257 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p 324 (331)
+. +|+.|++++|++++..+..+.++++|+.|++++|.+++..+..+. .+++|+.+++++|++...++
T Consensus 559 l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 559 LF-ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred cc-CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 54 777777777777754455566777777777777777754444454 56777777777777766554
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=236.87 Aligned_cols=271 Identities=17% Similarity=0.114 Sum_probs=201.0
Q ss_pred CCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccc-cCCccCcCCCCCCEEEccCccccccCCccccCcccccc
Q 036258 54 ISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFG-QIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRS 132 (331)
Q Consensus 54 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 132 (331)
.+++++|++++|.++ .++...|..+++|++|++++|...+ ..|.+|.++++|++|++++|.+.+..|..|.++++|++
T Consensus 23 p~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 378999999999998 5554556899999999999996544 44788999999999999999999888999999999999
Q ss_pred cccCccccccccccCC-cchhcCCCCCcEEEcCCCCCCCC--cccccCCCCCceeeCcCccccccCchhccCC--CCCCE
Q 036258 133 LVLGHKAHNSLHGHLP-STLSVSLPNLKWLALGMNKLRTI--PNSITNASELTLLELGKNSFSGLVPNTFGNL--RFLSL 207 (331)
Q Consensus 133 L~l~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~--~~L~~ 207 (331)
|++++|... +.++ ...+..+++|++|++++|.+..+ +..+.++++|++|++++|.+.+..+..+..+ ++|+.
T Consensus 102 L~Ls~n~l~---~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 102 LRLYFCGLS---DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp EECTTCCCS---SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred eeCcCCCCC---cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 999766554 3222 23355899999999999999854 3578999999999999999988888888776 88999
Q ss_pred EEccCCcccCccCCCc-----------------------cccccccc---------------------------------
Q 036258 208 LDLGNNYLTTRSSTTE-----------------------WSFLSSLT--------------------------------- 231 (331)
Q Consensus 208 L~l~~~~l~~~~~~~~-----------------------~~~~~~~~--------------------------------- 231 (331)
|+++.|.+.......- ...+..+.
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 9999998776321100 00000000
Q ss_pred ---c--CCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCC
Q 036258 232 ---N--CIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRL 306 (331)
Q Consensus 232 ---~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 306 (331)
. .++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+..+..+.++++|+.|++++|.+++..+..+..+
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred hhhccccCCccEEECCCCcccccChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 0 14566666666666655555555555 77777777777776666677777777777777777776666677777
Q ss_pred CCCCeEeccCCeeeecCCccccC
Q 036258 307 QQLQGLFLFGNNLQGSIPSDLCH 329 (331)
Q Consensus 307 ~~L~~L~l~~n~~~~~~p~~~~~ 329 (331)
++|+.|++++|.+++..|..+..
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~ 360 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKF 360 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCS
T ss_pred CCCCEEECCCCCCCccChhhhcC
Confidence 77777777777776433444443
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2e-27 Score=207.92 Aligned_cols=248 Identities=26% Similarity=0.389 Sum_probs=160.3
Q ss_pred hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccc
Q 036258 50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK 129 (331)
Q Consensus 50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 129 (331)
.+..+++|++|++++|.++ .++. |..+++|++|++++|.+.. + ..+..+++|++|++++|.+... +. +..+++
T Consensus 61 ~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~ 133 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTK 133 (347)
T ss_dssp TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTT
T ss_pred hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCc
Confidence 3788899999999999887 6665 5789999999999988874 3 3588889999999999888743 33 677778
Q ss_pred ccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCc-------------
Q 036258 130 LRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVP------------- 196 (331)
Q Consensus 130 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~------------- 196 (331)
|++|++++|..... ++ . +..+++|++|++.+|.+..++. +..+++|++|++++|.+.+..+
T Consensus 134 L~~L~l~~n~~~~~---~~-~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 134 MYSLNLGANHNLSD---LS-P-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207 (347)
T ss_dssp CCEEECTTCTTCCC---CG-G-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred eeEEECCCCCCccc---cc-c-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecc
Confidence 88888765532211 11 1 2244555555555554443332 4444444444444444432211
Q ss_pred -------hhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccC
Q 036258 197 -------NTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDC 269 (331)
Q Consensus 197 -------~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 269 (331)
..+..+++|++|++++|.+... +. +..+++|++|++++|.+.+. ..+..++ +|+.|++++|
T Consensus 208 ~n~l~~~~~~~~~~~L~~L~l~~n~l~~~--------~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~l~~n 275 (347)
T 4fmz_A 208 VNQITDITPVANMTRLNSLKIGNNKITDL--------SP-LANLSQLTWLEIGTNQISDI--NAVKDLT-KLKMLNVGSN 275 (347)
T ss_dssp SSCCCCCGGGGGCTTCCEEECCSSCCCCC--------GG-GTTCTTCCEEECCSSCCCCC--GGGTTCT-TCCEEECCSS
T ss_pred cCCCCCCchhhcCCcCCEEEccCCccCCC--------cc-hhcCCCCCEEECCCCccCCC--hhHhcCC-CcCEEEccCC
Confidence 1145556666666666665542 11 56677777777777777642 3344444 7777777777
Q ss_pred cccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCC
Q 036258 270 ELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP 324 (331)
Q Consensus 270 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 324 (331)
.+.+ + ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|
T Consensus 276 ~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 276 QISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred ccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 7764 3 356777778888888887776666677777888888888888775444
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=7.3e-28 Score=224.01 Aligned_cols=128 Identities=23% Similarity=0.233 Sum_probs=95.2
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
+++++|++++|.+. .++...|..+++|++|++++|.+.+..|..|..+++|++|++++|.++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 78999999999988 676666688999999999999998887888999999999999999888 56655 788999999
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCC--ceeeCcCccc
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASEL--TLLELGKNSF 191 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L--~~L~l~~n~~ 191 (331)
+++|....+. ++. .+..+++|++|++++|.+... .+..+++| ++|++++|.+
T Consensus 128 Ls~N~l~~l~--~p~-~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 128 LSFNDFDVLP--VCK-EFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCSSCCSBCC--CCG-GGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred CCCCCccccC--chH-hhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 9776665331 222 334788888888888877632 23333344 6666655554
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.2e-28 Score=210.35 Aligned_cols=213 Identities=27% Similarity=0.324 Sum_probs=165.9
Q ss_pred CCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCC
Q 036258 79 LPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL 158 (331)
Q Consensus 79 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 158 (331)
.++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L----------------------- 134 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL----------------------- 134 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEE-----------------------
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEEC-----------------------
Confidence 467777777777776 55666667777777777777766 56665555555555555
Q ss_pred cEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchh---------ccCCCCCCEEEccCCcccCccCCCccccccc
Q 036258 159 KWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNT---------FGNLRFLSLLDLGNNYLTTRSSTTEWSFLSS 229 (331)
Q Consensus 159 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---------l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 229 (331)
++|.+..+|..+..+++|++|++++|.+.+..|.. +.++++|++|++++|.++. ++..
T Consensus 135 -----s~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--------lp~~ 201 (328)
T 4fcg_A 135 -----ARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--------LPAS 201 (328)
T ss_dssp -----ESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC--------CCGG
T ss_pred -----CCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc--------chHh
Confidence 44444444444555555555555554444444433 4568999999999999884 4566
Q ss_pred cccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCC
Q 036258 230 LTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQL 309 (331)
Q Consensus 230 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 309 (331)
+..+++|++|++++|.+. .+|..+..++ +|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|
T Consensus 202 l~~l~~L~~L~L~~N~l~-~l~~~l~~l~-~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLS-ALGPAIHHLP-KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp GGGCTTCCEEEEESSCCC-CCCGGGGGCT-TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred hcCCCCCCEEEccCCCCC-cCchhhccCC-CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence 889999999999999998 5677777776 99999999999999999999999999999999999999999999999999
Q ss_pred CeEeccCCeeeecCCccccCCC
Q 036258 310 QGLFLFGNNLQGSIPSDLCHWG 331 (331)
Q Consensus 310 ~~L~l~~n~~~~~~p~~~~~~~ 331 (331)
++|++++|++.+.+|+.+.+++
T Consensus 280 ~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp CEEECTTCTTCCCCCGGGGGSC
T ss_pred CEEeCCCCCchhhccHHHhhcc
Confidence 9999999999999999988764
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.3e-28 Score=211.76 Aligned_cols=262 Identities=26% Similarity=0.301 Sum_probs=215.0
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCccccc--CCccCcCCCCCCEEEccCccccccCCccccCcccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQ--IPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRS 132 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 132 (331)
+++++|++++|.++ .+|..+|..+++|++|++++|.+... .+..+..+++|++|++++|.+. .++..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 68999999999998 89988889999999999999988632 3566778999999999999998 57777999999999
Q ss_pred cccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC-CcccccCCCCCceeeCcCccccc-cCchhccCCCCCCEEEc
Q 036258 133 LVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT-IPNSITNASELTLLELGKNSFSG-LVPNTFGNLRFLSLLDL 210 (331)
Q Consensus 133 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l 210 (331)
|++++|...... ....+..+++|++|++++|.+.. .+..+..+++|++|++++|.+.+ ..+..+..+++|++|++
T Consensus 106 L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 106 LDFQHSNLKQMS---EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp EECTTSEEESST---TTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred EECCCCcccccc---cchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 999776665432 12344588999999999999874 45778889999999999999986 56788999999999999
Q ss_pred cCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCC-CCCEEE
Q 036258 211 GNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLN-GLIDLR 289 (331)
Q Consensus 211 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~ 289 (331)
++|.+... .+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+..|..+..++ +|+.|+
T Consensus 183 s~n~l~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 183 SQCQLEQL-------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp TTSCCCEE-------CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT-TCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred CCCCcCCc-------CHHHhcCCCCCCEEECCCCccCccChhhccCcc-cCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 99999864 345688899999999999999877666777666 999999999999988899999985 999999
Q ss_pred ccCCCCcccCC--cCccCCCCCCeEeccCCeeeecCCccccC
Q 036258 290 LQDNDLNGTIP--TTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329 (331)
Q Consensus 290 l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~~~~~~p~~~~~ 329 (331)
+++|++.+.-. +...-+...+.+.+..+.+....|+.+..
T Consensus 255 L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 255 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp CTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred ccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 99999985321 11122344556667777777777777654
No 44
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.8e-27 Score=207.04 Aligned_cols=245 Identities=22% Similarity=0.372 Sum_probs=176.9
Q ss_pred hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258 51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL 130 (331)
Q Consensus 51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 130 (331)
|..+++|++|++++|.+. .++. |..+++|++|++++|.+.+. +. +..+++|++|++++|..... +..+..+++|
T Consensus 84 ~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L 157 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGL 157 (347)
T ss_dssp GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTC
T ss_pred hhcCCcCCEEEccCCccc-CchH--HcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccc-ccchhhCCCC
Confidence 778888888888888877 5542 46788888888888877643 22 66677777777776643322 2234555555
Q ss_pred cccccCccccccccc------------------cCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCcccc
Q 036258 131 RSLVLGHKAHNSLHG------------------HLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFS 192 (331)
Q Consensus 131 ~~L~l~~~~~~~~~~------------------~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~ 192 (331)
++|+++++....... .++. +..+++|+++++.+|.+..++. +..+++|++|++++|.+.
T Consensus 158 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred cEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccC
Confidence 555554433322211 0111 2245566666666666554443 677889999999999887
Q ss_pred ccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCccc
Q 036258 193 GLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELK 272 (331)
Q Consensus 193 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 272 (331)
...+ +..+++|++|++++|.+..+ ..+..+++|++|++++|.+.+. ..+..++ +|+.|++++|.+.
T Consensus 235 ~~~~--~~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 235 DLSP--LANLSQLTWLEIGTNQISDI---------NAVKDLTKLKMLNVGSNQISDI--SVLNNLS-QLNSLFLNNNQLG 300 (347)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCC---------GGGTTCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCC
T ss_pred CCcc--hhcCCCCCEEECCCCccCCC---------hhHhcCCCcCEEEccCCccCCC--hhhcCCC-CCCEEECcCCcCC
Confidence 6543 88899999999999988863 3478899999999999999854 3455555 9999999999999
Q ss_pred ccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258 273 GSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320 (331)
Q Consensus 273 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 320 (331)
+..+..+..+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888899999999999999999995544 788999999999999986
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=4.7e-27 Score=221.53 Aligned_cols=124 Identities=25% Similarity=0.364 Sum_probs=80.4
Q ss_pred CCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC
Q 036258 41 DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL 120 (331)
Q Consensus 41 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 120 (331)
|....++...|.++++|++|++++|.|+ .+++..|..+++|++|+|++|++.+..+..|.++++|++|++++|.+++..
T Consensus 62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 62 NPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred CCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence 4455556667788888888888888877 676666677888888888887777655566777777777777777777555
Q ss_pred CccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCC
Q 036258 121 PENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKL 168 (331)
Q Consensus 121 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 168 (331)
+..|.++++|++|++++|....+ ..+. .+..+++|++|++++|.+
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~l~~~--~~~~-~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 141 NFPIGHLKTLKELNVAHNLIQSF--KLPE-YFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCC--CCCG-GGGGCTTCCEEECCSSCC
T ss_pred hhhhhcCcccCeeccccCccccC--CCch-hhccchhhhhhcccCccc
Confidence 55667777777777755443322 1112 122455555555555443
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=5.3e-27 Score=221.17 Aligned_cols=133 Identities=25% Similarity=0.216 Sum_probs=116.4
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
+++++|+|++|.|+ .+++..|..+++|++|+|++|.|.++.+.+|.++++|++|+|++|+++...+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 37999999999998 88887789999999999999999988888899999999999999999976667899999999999
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCCCCCCC--CcccccCCCCCceeeCcCcccc
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT--IPNSITNASELTLLELGKNSFS 192 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~l~~L~~L~l~~n~~~ 192 (331)
+++|.... ++...+..+++|++|++++|.+.. .|..+..+++|++|++++|.+.
T Consensus 131 Ls~N~l~~----l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 131 AVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CTTSCCCC----STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCC----CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 98776653 445555689999999999999874 5678888999999999888664
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=5.3e-29 Score=215.21 Aligned_cols=250 Identities=20% Similarity=0.172 Sum_probs=199.3
Q ss_pred hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258 51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL 130 (331)
Q Consensus 51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 130 (331)
+..+++|++|++++|.+. .++...|..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. + ..++|
T Consensus 30 ~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L 101 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSI 101 (317)
T ss_dssp HTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTC
T ss_pred hccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCc
Confidence 556678999999999998 6666666889999999999999876544 88899999999999988732 2 34899
Q ss_pred cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhc-cCCCCCCEE
Q 036258 131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTF-GNLRFLSLL 208 (331)
Q Consensus 131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L 208 (331)
++|++++|....... ..+++|++|++++|.+..++ ..+..+++|++|++++|.+.+..+..+ ..+++|++|
T Consensus 102 ~~L~l~~n~l~~~~~-------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 102 ETLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp CEEECCSSCCSEEEE-------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CEEECCCCccCCcCc-------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence 999997776654432 14678999999999998664 577888999999999999987666665 468899999
Q ss_pred EccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEE
Q 036258 209 DLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDL 288 (331)
Q Consensus 209 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 288 (331)
++++|.++.++. ...+++|++|++++|.+.+ +|..+..++ +|+.|++++|.++ .+|..+..+++|+.|
T Consensus 175 ~L~~N~l~~~~~---------~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~-~L~~L~L~~N~l~-~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 175 NLQYNFIYDVKG---------QVVFAKLKTLDLSSNKLAF-MGPEFQSAA-GVTWISLRNNKLV-LIEKALRFSQNLEHF 242 (317)
T ss_dssp ECTTSCCCEEEC---------CCCCTTCCEEECCSSCCCE-ECGGGGGGT-TCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred ECCCCcCccccc---------ccccccCCEEECCCCcCCc-chhhhcccC-cccEEECcCCccc-chhhHhhcCCCCCEE
Confidence 999998886422 3348889999999999984 555566665 9999999999998 578888899999999
Q ss_pred EccCCCCc-ccCCcCccCCCCCCeEeccCCe-eeecCCccc
Q 036258 289 RLQDNDLN-GTIPTTVGRLQQLQGLFLFGNN-LQGSIPSDL 327 (331)
Q Consensus 289 ~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~ 327 (331)
++++|++. +.++..+..+++|+.+++.++. ++|..|...
T Consensus 243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp ECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred EccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc
Confidence 99999998 6677778888899999998544 666666544
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=3.9e-28 Score=225.33 Aligned_cols=170 Identities=19% Similarity=0.210 Sum_probs=99.3
Q ss_pred CCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccc-cCCc
Q 036258 44 SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTG-RLPE 122 (331)
Q Consensus 44 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~ 122 (331)
..+....|.++++|++|++++|.+. .++...|..+++|++|++++|.+.+..+..|+.+++|++|++++|.+++ ..|.
T Consensus 39 ~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 117 (549)
T 2z81_A 39 TYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117 (549)
T ss_dssp CEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC
T ss_pred CccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh
Confidence 3333445677777777777777776 4444444667777777777777765555557777777777777777664 2345
Q ss_pred cccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC-CcccccCCCCCceeeCcCccccccCchhccC
Q 036258 123 NIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT-IPNSITNASELTLLELGKNSFSGLVPNTFGN 201 (331)
Q Consensus 123 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 201 (331)
.+.++++|++|++++|. ..+.++...+..+++|++|++++|.+.. .|..+..+++|++|++++|.+.......+..
T Consensus 118 ~~~~l~~L~~L~L~~n~---~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 194 (549)
T 2z81_A 118 LFPNLTNLQTLRIGNVE---TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194 (549)
T ss_dssp SCTTCTTCCEEEEEESS---SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHS
T ss_pred hhhccCCccEEECCCCc---cccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhh
Confidence 66777777777775443 1223333334466777777777776663 4455555555555555444433221122233
Q ss_pred CCCCCEEEccCCcccC
Q 036258 202 LRFLSLLDLGNNYLTT 217 (331)
Q Consensus 202 ~~~L~~L~l~~~~l~~ 217 (331)
+++|++|++++|.+..
T Consensus 195 l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 195 LSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTTBSEEEEESCBCTT
T ss_pred cccccEEEccCCcccc
Confidence 4555555555555443
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.3e-28 Score=212.72 Aligned_cols=249 Identities=21% Similarity=0.214 Sum_probs=208.0
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
..++..+++.+.+. ..+..++..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 10 ~~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~ 86 (317)
T 3o53_A 10 NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD 86 (317)
T ss_dssp TEEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEE
T ss_pred CceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEE
Confidence 45777888888886 6677777889999999999999997777889999999999999999985444 88999999999
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 214 (331)
+++|....+. ..++|++|++++|.+..++. ..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 87 Ls~n~l~~l~---------~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 87 LNNNYVQELL---------VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp CCSSEEEEEE---------ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred CcCCcccccc---------CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence 9877665432 34899999999999986653 236889999999999998878888899999999999999
Q ss_pred ccCccCCCcccccccc-ccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCC
Q 036258 215 LTTRSSTTEWSFLSSL-TNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN 293 (331)
Q Consensus 215 l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 293 (331)
+... .+..+ ..+++|++|++++|.+.+..... .+ ++|+.|++++|.+++ +|..+..+++|+.|++++|
T Consensus 156 l~~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 156 IDTV-------NFAELAASSDTLEHLNLQYNFIYDVKGQV--VF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp CCEE-------EGGGGGGGTTTCCEEECTTSCCCEEECCC--CC-TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTS
T ss_pred CCcc-------cHHHHhhccCcCCEEECCCCcCccccccc--cc-ccCCEEECCCCcCCc-chhhhcccCcccEEECcCC
Confidence 9874 23334 47899999999999998553222 23 499999999999984 5556999999999999999
Q ss_pred CCcccCCcCccCCCCCCeEeccCCeee-ecCCccccC
Q 036258 294 DLNGTIPTTVGRLQQLQGLFLFGNNLQ-GSIPSDLCH 329 (331)
Q Consensus 294 ~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~ 329 (331)
.++ .+|..+..+++|+.|++++|+++ +.+|..+.+
T Consensus 225 ~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp CCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred ccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 999 78888999999999999999998 666665544
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=7.9e-27 Score=216.51 Aligned_cols=96 Identities=25% Similarity=0.343 Sum_probs=66.7
Q ss_pred CCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccc-cCCccCcCCCCCCEEEccCccccccCC
Q 036258 43 YSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFG-QIPLSLSKCTQLQHLWLEHNKFTGRLP 121 (331)
Q Consensus 43 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~ 121 (331)
...++...|.++++|++|++++|.+. .++...|+.+++|++|++++|.+.+ ..|..++.+++|++|++++|.+.+.++
T Consensus 62 i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 62 INTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred cCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence 33444456888888999999988887 6666656888888888888888764 345667778888888888776322333
Q ss_pred -ccccCcccccccccCccc
Q 036258 122 -ENIGNLSKLRSLVLGHKA 139 (331)
Q Consensus 122 -~~~~~l~~L~~L~l~~~~ 139 (331)
..+.++++|++|++++|.
T Consensus 141 ~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 141 RIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp TTTTTTCCEEEEEEEEETT
T ss_pred HhhhhcccccCeeeccCCc
Confidence 455566666666665443
No 51
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.8e-26 Score=208.52 Aligned_cols=245 Identities=27% Similarity=0.381 Sum_probs=150.7
Q ss_pred hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258 51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL 130 (331)
Q Consensus 51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 130 (331)
+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.++.. +. +..+++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 136 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNL 136 (466)
T ss_dssp GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTC
T ss_pred hhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCC
Confidence 778899999999999887 5665 5788999999999988875443 88889999999998888743 32 7788888
Q ss_pred cccccCcccccccccc---------------CCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccC
Q 036258 131 RSLVLGHKAHNSLHGH---------------LPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLV 195 (331)
Q Consensus 131 ~~L~l~~~~~~~~~~~---------------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~ 195 (331)
++|++++|....+..- .....+..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..
T Consensus 137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG
T ss_pred CEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccccc
Confidence 8888877665443210 00011336677778888777776654 3666777777777777776543
Q ss_pred chhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhcc-----------------
Q 036258 196 PNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFS----------------- 258 (331)
Q Consensus 196 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~----------------- 258 (331)
+ +..+++|++|++++|.+..+ ..+..+++|++|++++|.+.+..+ +..++
T Consensus 216 ~--~~~l~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 282 (466)
T 1o6v_A 216 P--LGILTNLDELSLNGNQLKDI---------GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCCCC---------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG
T ss_pred c--ccccCCCCEEECCCCCcccc---------hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc
Confidence 3 45566666666666665542 123444555555555555443222 22222
Q ss_pred ----ccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258 259 ----DSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320 (331)
Q Consensus 259 ----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 320 (331)
++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..| +..+++|++|++++|.++
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence 145555555554442211 4455555555555555553322 445555555555555555
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.4e-26 Score=209.69 Aligned_cols=227 Identities=25% Similarity=0.239 Sum_probs=197.8
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
+++++|++++|.+. .++...|..+++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 57999999999998 66666668999999999999999988889999999999999999999977677799999999999
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCC-CCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccC
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGM-NKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN 212 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 212 (331)
+++|.+. .++...+..+++|++|++++ +.+..++ ..+..+++|+.|++++|.+.+. + .+..+++|++|++++
T Consensus 154 L~~N~l~----~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 154 LRNNPIE----SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSG 227 (452)
T ss_dssp CCSCCCC----EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTT
T ss_pred CCCCCcc----eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcC
Confidence 9877765 34455566899999999988 4566555 5688999999999999999865 3 478899999999999
Q ss_pred CcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccC
Q 036258 213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD 292 (331)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 292 (331)
|.+..+ .+..+..+++|++|++++|.+.+..+..+..++ +|+.|+|++|.+++..+..+..+++|+.|++++
T Consensus 228 N~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 228 NHFPEI-------RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA-SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp SCCSEE-------CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred CcCccc-------CcccccCccCCCEEEeCCCcCceECHHHhcCCC-CCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 999873 456689999999999999999988888888777 999999999999977777889999999999999
Q ss_pred CCCc
Q 036258 293 NDLN 296 (331)
Q Consensus 293 n~l~ 296 (331)
|++.
T Consensus 300 Np~~ 303 (452)
T 3zyi_A 300 NPWN 303 (452)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 9865
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.6e-26 Score=195.38 Aligned_cols=227 Identities=22% Similarity=0.253 Sum_probs=194.3
Q ss_pred cEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEE
Q 036258 83 EQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA 162 (331)
Q Consensus 83 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 162 (331)
+.++++++.+. .+|..+ .++|++|++++|.++...+..+..+++|++|++++|....+ ....+..+++|++|+
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI----DAAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEE
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee----CHhhcCCccCCCEEe
Confidence 67888888887 556544 57999999999999977778899999999999977665533 233445889999999
Q ss_pred cCCCC-CCCC-cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEE
Q 036258 163 LGMNK-LRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLG 240 (331)
Q Consensus 163 l~~~~-l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 240 (331)
+++|. +..+ +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+...+ +..+..+++|++|+
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-------DDTFRDLGNLTHLF 159 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------TTTTTTCTTCCEEE
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-------HhHhccCCCccEEE
Confidence 99997 7766 578899999999999999999888888999999999999999998743 33478899999999
Q ss_pred eecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258 241 LHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320 (331)
Q Consensus 241 l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 320 (331)
+++|.+.+..+..+..+. +|+.|++++|.+.+..|.++..+++|+.|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 160 l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCCcccccCHHHhcCcc-ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 999999866666677776 9999999999999888999999999999999999999655567899999999999999998
Q ss_pred ecCC
Q 036258 321 GSIP 324 (331)
Q Consensus 321 ~~~p 324 (331)
...+
T Consensus 239 c~~~ 242 (285)
T 1ozn_A 239 CDCR 242 (285)
T ss_dssp CSGG
T ss_pred CCCC
Confidence 6554
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.2e-26 Score=207.78 Aligned_cols=227 Identities=24% Similarity=0.240 Sum_probs=196.5
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
++++.|++++|.+. .++...|..+++|++|+|++|.+....+..|.++++|++|++++|.++...+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 67999999999998 66666679999999999999999988888899999999999999999966667899999999999
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCCC-CCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccC
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN-KLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN 212 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 212 (331)
+++|.+.. ++...+..+++|++|++.++ .+..++ ..+..+++|++|++++|.+... | .+..+++|++|++++
T Consensus 143 L~~N~i~~----~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 143 LRNNPIES----IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSG 216 (440)
T ss_dssp CCSCCCCE----ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTT
T ss_pred CCCCcccc----cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCC
Confidence 98777653 44555668999999999884 455555 5788999999999999999854 4 478899999999999
Q ss_pred CcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccC
Q 036258 213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD 292 (331)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 292 (331)
|.+..+ .+..+..+++|++|++++|.+.+..+..+..++ +|+.|+|++|++++..+..+..+++|+.|++++
T Consensus 217 N~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 217 NHLSAI-------RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp SCCCEE-------CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT-TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred CccCcc-------ChhhhccCccCCEEECCCCceeEEChhhhcCCC-CCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 999874 345689999999999999999988888888777 999999999999977777889999999999999
Q ss_pred CCCc
Q 036258 293 NDLN 296 (331)
Q Consensus 293 n~l~ 296 (331)
|++.
T Consensus 289 Np~~ 292 (440)
T 3zyj_A 289 NPWN 292 (440)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 9864
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=6.1e-26 Score=206.33 Aligned_cols=149 Identities=27% Similarity=0.405 Sum_probs=103.2
Q ss_pred CCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccC
Q 036258 154 SLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC 233 (331)
Q Consensus 154 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~ 233 (331)
.+++|++|++++|.+..++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+... + .+..+
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~--------~-~~~~l 308 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--------S-PISNL 308 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--------G-GGGGC
T ss_pred cCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc--------h-hhcCC
Confidence 45566666666666554443 5556666666666666654322 55666677777766666542 1 16677
Q ss_pred CCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEe
Q 036258 234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLF 313 (331)
Q Consensus 234 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 313 (331)
++|++|++++|.+.+..| +..++ +|+.|++++|.+.+. ..+..+++|+.|++++|.+++..| +..+++|+.|+
T Consensus 309 ~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 381 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP--VSSLT-KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCT-TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEE
T ss_pred CCCCEEECcCCcCCCchh--hccCc-cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEe
Confidence 888888888888775554 44444 888888888888743 467888888888888888886555 77888899999
Q ss_pred ccCCeeee
Q 036258 314 LFGNNLQG 321 (331)
Q Consensus 314 l~~n~~~~ 321 (331)
+++|.+++
T Consensus 382 l~~n~~~~ 389 (466)
T 1o6v_A 382 LNDQAWTN 389 (466)
T ss_dssp CCCEEEEC
T ss_pred ccCCcccC
Confidence 99998885
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.9e-28 Score=211.20 Aligned_cols=253 Identities=22% Similarity=0.225 Sum_probs=200.6
Q ss_pred hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCccc-ccCCccCc-------CCCCCCEEEccCccccccCC
Q 036258 50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFF-GQIPLSLS-------KCTQLQHLWLEHNKFTGRLP 121 (331)
Q Consensus 50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~ 121 (331)
.+...++|+.|++++|.+ .+|..++.. |+.|++++|.+. ...|..+. .+++|++|++++|.+++..|
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 466778899999999988 788877443 889999999884 34555554 68999999999999998888
Q ss_pred ccc--cCcccccccccCccccccccccCCcchhcCC-----CCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccc
Q 036258 122 ENI--GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSL-----PNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSG 193 (331)
Q Consensus 122 ~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~ 193 (331)
..+ ..+++|++|++++|..... +..+ ..+ ++|++|++++|.+..++ ..+..+++|++|++++|.+.+
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR----DAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS----SSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred HHHHHhcCCCccEEEccCCCCcch----hHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 876 8899999999977766543 2222 233 89999999999998766 789999999999999999764
Q ss_pred c--Cchhc--cCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccC
Q 036258 194 L--VPNTF--GNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDC 269 (331)
Q Consensus 194 ~--~~~~l--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 269 (331)
. .+..+ ..+++|++|++++|.+...+. .....+..+++|++|++++|.+.+..|.......++|++|++++|
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSG----VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHH----HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHH----HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence 3 23333 788999999999999884321 111234578999999999999987765333333349999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeee
Q 036258 270 ELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQG 321 (331)
Q Consensus 270 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 321 (331)
.++ .+|..+. ++|+.|++++|.+++ +|. +..+++|++|++++|++++
T Consensus 264 ~l~-~ip~~~~--~~L~~L~Ls~N~l~~-~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 264 GLK-QVPKGLP--AKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCS-SCCSSCC--SEEEEEECCSSCCCS-CCC-TTTSCEEEEEECTTCTTTC
T ss_pred ccC-hhhhhcc--CCceEEECCCCCCCC-Chh-HhhCCCCCEEeccCCCCCC
Confidence 998 7887776 889999999999995 466 8899999999999999884
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=203.47 Aligned_cols=247 Identities=19% Similarity=0.203 Sum_probs=194.8
Q ss_pred CCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCC-
Q 036258 43 YSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLP- 121 (331)
Q Consensus 43 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~- 121 (331)
...++...|.++++|++|++++|.++ .++...|..+++|++|++++|.+.+..+..|+.+++|++|++++|.++...+
T Consensus 64 i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 142 (353)
T 2z80_A 64 ITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 142 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS
T ss_pred CcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch
Confidence 44445557899999999999999998 5665556899999999999999986555558999999999999999984333
Q ss_pred ccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCccccccCchhcc
Q 036258 122 ENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFG 200 (331)
Q Consensus 122 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 200 (331)
..+..+++|++|++++|. ....++...+..+++|++|++++|.+..+ +..+..+++|++|++++|.+....+..+.
T Consensus 143 ~~~~~l~~L~~L~l~~n~---~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 219 (353)
T 2z80_A 143 SLFSHLTKLQILRVGNMD---TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219 (353)
T ss_dssp CSCTTCTTCCEEEEEESS---SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH
T ss_pred hhhccCCCCcEEECCCCc---cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhh
Confidence 478899999999997653 11233444455889999999999998854 68899999999999999998755555556
Q ss_pred CCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccc----cCCchhhhccccccEEEeccCcccccCC
Q 036258 201 NLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSG----ILPPLIGNFSDSLQQFYAYDCELKGSIP 276 (331)
Q Consensus 201 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 276 (331)
.+++|++|++++|.+...+.. ..........++.+++.++.+.+ .+|..+..++ +|+.|++++|.++ .+|
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~----~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~-~L~~L~Ls~N~l~-~i~ 293 (353)
T 2z80_A 220 VTSSVECLELRDTDLDTFHFS----ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS-GLLELEFSRNQLK-SVP 293 (353)
T ss_dssp HTTTEEEEEEESCBCTTCCCC----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT-TCCEEECCSSCCC-CCC
T ss_pred hcccccEEECCCCcccccccc----ccccccccchhhccccccccccCcchhhhHHHHhccc-CCCEEECCCCCCC-ccC
Confidence 789999999999999875432 12223456778899999888764 3566666666 9999999999999 566
Q ss_pred cc-ccCCCCCCEEEccCCCCcccC
Q 036258 277 QE-IGNLNGLIDLRLQDNDLNGTI 299 (331)
Q Consensus 277 ~~-l~~l~~L~~L~l~~n~l~~~~ 299 (331)
.. +..+++|+.|++++|++.+..
T Consensus 294 ~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 294 DGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCH
T ss_pred HHHHhcCCCCCEEEeeCCCccCcC
Confidence 55 589999999999999998543
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3.5e-25 Score=200.24 Aligned_cols=211 Identities=21% Similarity=0.219 Sum_probs=124.6
Q ss_pred hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccc
Q 036258 50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK 129 (331)
Q Consensus 50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 129 (331)
.+.++++|++|++++|.++ .+| . +..+++|++|++++|.+.+. | ++.+++|++|++++|.+++. + +..+++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~-~~~-~-l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSIT-DMT-G-IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EHHHHTTCCEEECCSSCCC-CCT-T-GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred ChhHcCCCCEEEccCCCcc-cCh-h-hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 4666777777777777776 455 3 36677777777777777643 3 67777777777777777643 2 667777
Q ss_pred ccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEE
Q 036258 130 LRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLD 209 (331)
Q Consensus 130 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 209 (331)
|++|++++|....+ + +..+++|++|++++|.++.++ +..+++|++|++++|...+.. .+..+++|++|+
T Consensus 108 L~~L~L~~N~l~~l----~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL----D---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp CCEEECCSSCCSCC----C---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CCEEECCCCcCCee----c---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 77777766555432 1 236677777777777776553 556666666666666433222 345556666666
Q ss_pred ccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEE
Q 036258 210 LGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLR 289 (331)
Q Consensus 210 l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 289 (331)
+++|.++.++ +..+++|++|++++|.+.+. .+..++ +|+.|++++|++++ +| +..+++|+.|+
T Consensus 177 ls~n~l~~l~----------l~~l~~L~~L~l~~N~l~~~---~l~~l~-~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 177 CSFNKITELD----------VSQNKLLNRLNCDTNNITKL---DLNQNI-QLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239 (457)
T ss_dssp CCSSCCCCCC----------CTTCTTCCEEECCSSCCSCC---CCTTCT-TCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred CCCCccceec----------cccCCCCCEEECcCCcCCee---ccccCC-CCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence 6666655421 34445555555555555432 123332 55555555555543 33 44455555555
Q ss_pred ccCCCCcc
Q 036258 290 LQDNDLNG 297 (331)
Q Consensus 290 l~~n~l~~ 297 (331)
+++|.+++
T Consensus 240 l~~N~l~~ 247 (457)
T 3bz5_A 240 CSVNPLTE 247 (457)
T ss_dssp CCSSCCSC
T ss_pred eeCCcCCC
Confidence 55555543
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-26 Score=210.70 Aligned_cols=236 Identities=20% Similarity=0.180 Sum_probs=182.1
Q ss_pred CCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccc
Q 036258 53 NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRS 132 (331)
Q Consensus 53 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 132 (331)
.+++|++|++++|.+. .++...|..+++|++|+|++|.+.+..| +..+++|++|++++|.+++. + ..++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCE
T ss_pred cCCCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCE
Confidence 3458999999999988 5665556889999999999998876554 88899999999999988732 2 2378899
Q ss_pred cccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCccccccCchhcc-CCCCCCEEEc
Q 036258 133 LVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFG-NLRFLSLLDL 210 (331)
Q Consensus 133 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l 210 (331)
|++++|.+..... ..+++|++|++++|.+..+ |..+..+++|+.|++++|.+.+..+..+. .+++|++|++
T Consensus 104 L~L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 104 LHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp EECCSSCCCCEEE-------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred EECcCCcCCCCCc-------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 9997766654432 1467899999999988865 46778888999999999988877676665 6888999999
Q ss_pred cCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEc
Q 036258 211 GNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRL 290 (331)
Q Consensus 211 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 290 (331)
++|.+...+ ....+++|++|++++|.+.+ +|..+..++ +|+.|++++|.++ .+|..+..+++|+.|++
T Consensus 177 s~N~l~~~~---------~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~-~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 177 QYNFIYDVK---------GQVVFAKLKTLDLSSNKLAF-MGPEFQSAA-GVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244 (487)
T ss_dssp TTSCCCEEE---------CCCCCTTCCEEECCSSCCCE-ECGGGGGGT-TCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred CCCcccccc---------ccccCCCCCEEECCCCCCCC-CCHhHcCCC-CccEEEecCCcCc-ccchhhccCCCCCEEEc
Confidence 998887642 13357888899999888885 444466665 8888888888888 46777888888888888
Q ss_pred cCCCCc-ccCCcCccCCCCCCeEecc
Q 036258 291 QDNDLN-GTIPTTVGRLQQLQGLFLF 315 (331)
Q Consensus 291 ~~n~l~-~~~~~~l~~l~~L~~L~l~ 315 (331)
++|++. +.+|..+..++.|+.+++.
T Consensus 245 ~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCcCcchHHHHHhCCCCcEEecc
Confidence 888887 5566667777778877775
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=5.2e-25 Score=186.48 Aligned_cols=221 Identities=22% Similarity=0.199 Sum_probs=135.3
Q ss_pred EEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCcc
Q 036258 59 MIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHK 138 (331)
Q Consensus 59 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 138 (331)
.++.++..+. .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 4666666676 777655 367889999988888776667888888999999888887665666777777777777655
Q ss_pred ccccccccCCcchhcCCCCCcEEEcCCCCCCCCcc-cccCCCCCceeeCcCcccccc-CchhccCCCCCCEEEccCCccc
Q 036258 139 AHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN-SITNASELTLLELGKNSFSGL-VPNTFGNLRFLSLLDLGNNYLT 216 (331)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~~~l~ 216 (331)
..... +...+..+++|++|++.+|.+..++. .+..+++|++|++++|.+... .|..+..+++|++|++++|.+.
T Consensus 87 ~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 87 PIQSL----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CCCEE----CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccCcc----ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 54322 22233356677777777776665442 466666677777766666543 3556666666666666666665
Q ss_pred CccCCCccccccccccCCCCc----EEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccC
Q 036258 217 TRSSTTEWSFLSSLTNCIYLK----VLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD 292 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 292 (331)
.++ +..+..+++|+ +|++++|.+.+..+..+. .. +|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 163 ~~~-------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 163 SIY-------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EEC-------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred cCC-------HHHhhhhhhccccceeeecCCCcccccCccccC-CC-cccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 432 12233333333 566666665533333222 22 555566655555543334445555555555555
Q ss_pred CCCc
Q 036258 293 NDLN 296 (331)
Q Consensus 293 n~l~ 296 (331)
|++.
T Consensus 234 N~~~ 237 (276)
T 2z62_A 234 NPWD 237 (276)
T ss_dssp SCBC
T ss_pred Cccc
Confidence 5555
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=4.2e-25 Score=199.70 Aligned_cols=236 Identities=20% Similarity=0.217 Sum_probs=144.1
Q ss_pred hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccc
Q 036258 50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK 129 (331)
Q Consensus 50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 129 (331)
.|..+++|++|++++|.++ .+| +..+++|++|++++|.+.+. + ++.+++|++|++++|.+++ ++ +..+++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~ 128 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPL 128 (457)
T ss_dssp TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTT
T ss_pred hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCc
Confidence 4888999999999999998 565 47899999999999998754 3 7889999999999998885 33 778889
Q ss_pred ccccccCccccccccccCCcchhcCCCCCcEEEcCCCC-CCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEE
Q 036258 130 LRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNK-LRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLL 208 (331)
Q Consensus 130 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 208 (331)
|++|++++|....+. +..+++|++|++++|. +..+ .+..+++|+.|++++|.+.+. + +..+++|++|
T Consensus 129 L~~L~l~~N~l~~l~-------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L 196 (457)
T 3bz5_A 129 LTYLNCARNTLTEID-------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRL 196 (457)
T ss_dssp CCEEECTTSCCSCCC-------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEE
T ss_pred CCEEECCCCccceec-------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEE
Confidence 999999776655431 1255666666666663 3333 244555666666666655542 2 4455555555
Q ss_pred EccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCcc----------
Q 036258 209 DLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQE---------- 278 (331)
Q Consensus 209 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------- 278 (331)
++++|.++.. .+..+++|++|++++|.+.+ +| +..++ +|+.|++++|.+.+..+..
T Consensus 197 ~l~~N~l~~~----------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~-~L~~L~l~~N~l~~~~~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 197 NCDTNNITKL----------DLNQNIQLTFLDCSSNKLTE-ID--VTPLT-QLTYFDCSVNPLTELDVSTLSKLTTLHCI 262 (457)
T ss_dssp ECCSSCCSCC----------CCTTCTTCSEEECCSSCCSC-CC--CTTCT-TCSEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred ECcCCcCCee----------ccccCCCCCEEECcCCcccc-cC--ccccC-CCCEEEeeCCcCCCcCHHHCCCCCEEecc
Confidence 5555555532 13444555555555555543 23 23332 4555555555544322211
Q ss_pred -------------------ccCCCCCCEEEccCCCCcccCCc--------CccCCCCCCeEeccCCeeee
Q 036258 279 -------------------IGNLNGLIDLRLQDNDLNGTIPT--------TVGRLQQLQGLFLFGNNLQG 321 (331)
Q Consensus 279 -------------------l~~l~~L~~L~l~~n~l~~~~~~--------~l~~l~~L~~L~l~~n~~~~ 321 (331)
+..+++|+.|++++|...+.+|. .+..+++|+.|++++|.+++
T Consensus 263 ~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 263 QTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 23445555555555554333321 13445666666666666664
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2e-26 Score=210.09 Aligned_cols=226 Identities=22% Similarity=0.211 Sum_probs=191.4
Q ss_pred CCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCC
Q 036258 79 LPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL 158 (331)
Q Consensus 79 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 158 (331)
+++|++|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+..+. ..++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~---------~~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL---------VGPSI 101 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE---------ECTTC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC---------CCCCc
Confidence 4489999999999998878899999999999999999986554 889999999999877665432 34899
Q ss_pred cEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccc-cCCCCc
Q 036258 159 KWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT-NCIYLK 237 (331)
Q Consensus 159 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-~~~~L~ 237 (331)
++|++++|.+..++. ..+++|+.|++++|.+.+..+..+..+++|++|++++|.+... .+..+. .+++|+
T Consensus 102 ~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~~l~~L~ 172 (487)
T 3oja_A 102 ETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-------NFAELAASSDTLE 172 (487)
T ss_dssp CEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE-------EGGGGGGGTTTCC
T ss_pred CEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc-------ChHHHhhhCCccc
Confidence 999999999987654 3468999999999999988888899999999999999999873 344454 789999
Q ss_pred EEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCC
Q 036258 238 VLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN 317 (331)
Q Consensus 238 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 317 (331)
+|++++|.+.+..+.. .+ ++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus 173 ~L~Ls~N~l~~~~~~~--~l-~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 173 HLNLQYNFIYDVKGQV--VF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp EEECTTSCCCEEECCC--CC-TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred EEecCCCccccccccc--cC-CCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCC
Confidence 9999999998663332 23 499999999999995 5556899999999999999999 58888999999999999999
Q ss_pred eee-ecCCccccC
Q 036258 318 NLQ-GSIPSDLCH 329 (331)
Q Consensus 318 ~~~-~~~p~~~~~ 329 (331)
+++ +.+|..+..
T Consensus 248 ~l~c~~~~~~~~~ 260 (487)
T 3oja_A 248 GFHCGTLRDFFSK 260 (487)
T ss_dssp CBCHHHHHHHHTT
T ss_pred CCcCcchHHHHHh
Confidence 988 566655543
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=6.9e-24 Score=191.58 Aligned_cols=248 Identities=25% Similarity=0.316 Sum_probs=134.1
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
++|++|++++|.++ .+|. |..+++|++|++++|.+.+ +|.. ..+|++|++++|.+++ +| .+.++++|++|+
T Consensus 131 ~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCC-CCcc--cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 57888888888887 5773 5778888888888888764 4443 2478888888887774 45 577777888887
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhc---------------
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTF--------------- 199 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l--------------- 199 (331)
+++|....+. . ..++|++|++++|.+..+|. +..+++|++|++++|.+.+. |..+
T Consensus 202 l~~N~l~~l~----~----~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l-~~~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 202 ADNNSLKKLP----D----LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTL-PDLPPSLEALNVRDNYLTD 271 (454)
T ss_dssp CCSSCCSSCC----C----CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSC-CSCCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCC----C----CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcc-cccccccCEEECCCCcccc
Confidence 7666554321 1 12355555555555555542 55555555555555555431 1110
Q ss_pred --cCCCCCCEEEccCCcccCccCCC-ccc-------cccccccC-CCCcEEEeecccccccCCchhhhccccccEEEecc
Q 036258 200 --GNLRFLSLLDLGNNYLTTRSSTT-EWS-------FLSSLTNC-IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYD 268 (331)
Q Consensus 200 --~~~~~L~~L~l~~~~l~~~~~~~-~~~-------~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 268 (331)
..+++|++|++++|.+..++... ... -...+... ++|++|++++|.+.+ +|..+ ++|+.|++++
T Consensus 272 l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~~----~~L~~L~L~~ 346 (454)
T 1jl5_A 272 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALP----PRLERLIASF 346 (454)
T ss_dssp CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCCC----TTCCEEECCS
T ss_pred cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccccC----CcCCEEECCC
Confidence 01234555555555544321100 000 00001122 367777777777663 44432 3788888888
Q ss_pred CcccccCCccccCCCCCCEEEccCCCCcc--cCCcCccCC-------------CCCCeEeccCCeeee--cCCccccCC
Q 036258 269 CELKGSIPQEIGNLNGLIDLRLQDNDLNG--TIPTTVGRL-------------QQLQGLFLFGNNLQG--SIPSDLCHW 330 (331)
Q Consensus 269 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l-------------~~L~~L~l~~n~~~~--~~p~~~~~~ 330 (331)
|.++ .+|. .+++|+.|++++|.+++ .+|..+..+ ++|+.|++++|++++ .+|+++.++
T Consensus 347 N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 347 NHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred Cccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 8777 4555 46788888888888887 677777766 778888888888887 788777654
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=5e-24 Score=198.44 Aligned_cols=233 Identities=27% Similarity=0.307 Sum_probs=153.8
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.++. +|. .+++|+.|+
T Consensus 61 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEE
Confidence 67888888888877 6765 4678888888888776 3443 56778888888887773 343 456677777
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 214 (331)
+++|....+ +. .+++|++|++++|.+..+|.. +.+|+.|++++|.+... | ..+++|++|++++|.
T Consensus 128 L~~N~l~~l----p~----~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 128 IFGNQLTSL----PV----LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQ 192 (622)
T ss_dssp CCSSCCSCC----CC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSC
T ss_pred CCCCCCCcC----CC----CCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCC
Confidence 766555432 22 246677777777766655532 23444455554444432 1 223445555555554
Q ss_pred ccCccCCCcc------------ccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCC
Q 036258 215 LTTRSSTTEW------------SFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNL 282 (331)
Q Consensus 215 l~~~~~~~~~------------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 282 (331)
+..++..... .++ ..+++|++|++++|.+.+ +|. ..++|+.|++++|.++ .+|. .+
T Consensus 193 l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~L~~-lp~----~l~~L~~L~Ls~N~L~-~lp~---~~ 260 (622)
T 3g06_A 193 LASLPTLPSELYKLWAYNNRLTSLP---ALPSGLKELIVSGNRLTS-LPV----LPSELKELMVSGNRLT-SLPM---LP 260 (622)
T ss_dssp CSCCCCCCTTCCEEECCSSCCSSCC---CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCS-CCCC---CC
T ss_pred CCCCCCccchhhEEECcCCcccccC---CCCCCCCEEEccCCccCc-CCC----CCCcCcEEECCCCCCC-cCCc---cc
Confidence 4432211000 011 123778999999998874 552 2248999999999888 5665 66
Q ss_pred CCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCcccc
Q 036258 283 NGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLC 328 (331)
Q Consensus 283 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 328 (331)
++|+.|++++|.++ .+|..+..+++|+.|++++|++++.+|+.+.
T Consensus 261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 78999999999999 7888899999999999999999987776553
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=3e-25 Score=191.19 Aligned_cols=224 Identities=19% Similarity=0.210 Sum_probs=180.9
Q ss_pred ccEEEcCCCcCc-cCCChhhh------cCCCCCcEEEccCCcccccCCccC--cCCCCCCEEEccCccccccCCccccCc
Q 036258 57 LKMIRLSSNSLS-GSLPNDLC------NRLPSLEQLVLRSNGFFGQIPLSL--SKCTQLQHLWLEHNKFTGRLPENIGNL 127 (331)
Q Consensus 57 L~~L~l~~~~i~-~~~~~~~~------~~~~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l 127 (331)
|++|++++|.+. ..+|..++ ..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 888999999884 45666552 158999999999999988888876 8999999999999999965 7777777
Q ss_pred -----ccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC---Ccccc--cCCCCCceeeCcCccccc---c
Q 036258 128 -----SKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT---IPNSI--TNASELTLLELGKNSFSG---L 194 (331)
Q Consensus 128 -----~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~---~~~~~--~~l~~L~~L~l~~n~~~~---~ 194 (331)
++|++|++++|.... ++...+..+++|++|++++|.+.. ++..+ ..+++|++|++++|.+.+ .
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 219 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLN----FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCC----CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH
T ss_pred HHhhcCCCcEEEeeCCCCcc----chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH
Confidence 899999997766643 333344589999999999998652 23334 788999999999999873 2
Q ss_pred CchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCccccc
Q 036258 195 VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS 274 (331)
Q Consensus 195 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 274 (331)
....+..+++|++|++++|.+..... ...+..+++|++|++++|.++ .+|..+. ++|++|++++|++++.
T Consensus 220 ~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~---~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 220 CSALAAARVQLQGLDLSHNSLRDAAG------APSCDWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp HHHHHHTTCCCSEEECTTSCCCSSCC------CSCCCCCTTCCEEECTTSCCS-SCCSSCC---SEEEEEECCSSCCCSC
T ss_pred HHHHHhcCCCCCEEECCCCcCCcccc------hhhhhhcCCCCEEECCCCccC-hhhhhcc---CCceEEECCCCCCCCC
Confidence 23455678999999999999987431 133566899999999999998 7777665 4999999999999854
Q ss_pred CCccccCCCCCCEEEccCCCCcc
Q 036258 275 IPQEIGNLNGLIDLRLQDNDLNG 297 (331)
Q Consensus 275 ~~~~l~~l~~L~~L~l~~n~l~~ 297 (331)
|. +..+++|++|++++|++++
T Consensus 290 -p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 290 -PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -CC-TTTSCEEEEEECTTCTTTC
T ss_pred -hh-HhhCCCCCEEeccCCCCCC
Confidence 65 8999999999999999984
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.8e-23 Score=175.19 Aligned_cols=154 Identities=27% Similarity=0.362 Sum_probs=94.0
Q ss_pred CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258 56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL 135 (331)
Q Consensus 56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 135 (331)
..+.++++++.++ .+|..+ .++++.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 5778999998888 788655 467899999999888766667888899999999888887444444566666666666
Q ss_pred CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258 136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 214 (331)
++|.... ++...+..+++|++|++++|.+..++ ..+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 93 ~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 93 TDNKLQA----LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp CSSCCCC----CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCCc----CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 5444332 22233334555555555555554333 234444555555555554444433444444445555554444
Q ss_pred ccC
Q 036258 215 LTT 217 (331)
Q Consensus 215 l~~ 217 (331)
+..
T Consensus 169 l~~ 171 (270)
T 2o6q_A 169 LKR 171 (270)
T ss_dssp CSC
T ss_pred CcE
Confidence 443
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.3e-23 Score=178.91 Aligned_cols=202 Identities=26% Similarity=0.283 Sum_probs=145.3
Q ss_pred hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258 51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL 130 (331)
Q Consensus 51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 130 (331)
+.+++++++++++++.++ .+|..+ .++++.|++++|.+.+..+..|..+++|++|++++|.++.. +.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcC
Confidence 677889999999999998 888766 47899999999999877778889999999999999988743 322 567777
Q ss_pred cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEE
Q 036258 131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLD 209 (331)
Q Consensus 131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 209 (331)
++|++++|....+ +... ..+++|++|++++|.++.++ ..|..+++|++|++++|.+....+..|..+++|++|+
T Consensus 80 ~~L~Ls~N~l~~l----~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 80 GTLDLSHNQLQSL----PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp CEEECCSSCCSSC----CCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEECCCCcCCcC----chhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 7777766655432 2222 36677777777777777655 5567777777777777777766666667777777777
Q ss_pred ccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCccc
Q 036258 210 LGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELK 272 (331)
Q Consensus 210 l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 272 (331)
+++|.++.++. ..+..+++|++|++++|.+. .+|..+.... .++.+++++|.+.
T Consensus 155 L~~N~l~~l~~-------~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~-~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 155 LANNNLTELPA-------GLLNGLENLDTLLLQENSLY-TIPKGFFGSH-LLPFAFLHGNPWL 208 (290)
T ss_dssp CTTSCCSCCCT-------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTC-CCSEEECCSCCBC
T ss_pred CCCCcCCccCH-------HHhcCcCCCCEEECCCCcCC-ccChhhcccc-cCCeEEeCCCCcc
Confidence 77777765432 22566777777777777776 5555555554 6777777776654
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=7.8e-24 Score=179.20 Aligned_cols=206 Identities=24% Similarity=0.222 Sum_probs=173.5
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
+++++|++++|.++ .++...|..+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 47999999999998 67766668999999999999999887777899999999999999999977778899999999999
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCCCCCCC--CcccccCCCCCceeeCcCccccccCchhccCCCCCC----EE
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT--IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLS----LL 208 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~----~L 208 (331)
+++|....+. ...+..+++|++|++++|.+.. +|..+..+++|++|++++|.+.+..+..+..+++|+ .|
T Consensus 107 l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 107 AVETNLASLE----NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp CTTSCCCCST----TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred CCCCCccccC----chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence 9877665433 2234488999999999999985 678899999999999999999987777777777776 89
Q ss_pred EccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCccccc
Q 036258 209 DLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS 274 (331)
Q Consensus 209 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 274 (331)
++++|.+..++.. .....+|++|++++|.+.+..+..+..++ +|+.|++++|.+...
T Consensus 183 ~ls~n~l~~~~~~--------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 183 DLSLNPMNFIQPG--------AFKEIRLKELALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCS 239 (276)
T ss_dssp ECCSSCCCEECTT--------SSCSCCEEEEECCSSCCSCCCTTTTTTCC-SCCEEECCSSCBCCC
T ss_pred ecCCCcccccCcc--------ccCCCcccEEECCCCceeecCHhHhcccc-cccEEEccCCccccc
Confidence 9999999865332 33445899999999999866555566666 999999999998853
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=5.6e-23 Score=185.66 Aligned_cols=246 Identities=26% Similarity=0.326 Sum_probs=170.8
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
++|++|++++|.+. .++. ..++|++|++++|.+.+ +| .|+.+++|++|++++|.+++ +|..+ .+|++|+
T Consensus 111 ~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~ 179 (454)
T 1jl5_A 111 QSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIA 179 (454)
T ss_dssp TTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEE
T ss_pred CCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEE
Confidence 45666666666665 4442 23799999999999985 66 59999999999999999984 55543 5999999
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 214 (331)
+++|....+ + . +..+++|++|++++|.+..+|... ++|++|++++|.+. ..|. +..+++|++|++++|.
T Consensus 180 L~~n~l~~l----~-~-~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 180 AGNNQLEEL----P-E-LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL 248 (454)
T ss_dssp CCSSCCSSC----C-C-CTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSC
T ss_pred CcCCcCCcC----c-c-ccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCc
Confidence 987766543 3 2 348999999999999998877543 58999999999998 4453 8889999999999998
Q ss_pred ccCccCCCc-c--------ccccccccCCCCcEEEeecccccc--cCCchhh-------------hccccccEEEeccCc
Q 036258 215 LTTRSSTTE-W--------SFLSSLTNCIYLKVLGLHSNQLSG--ILPPLIG-------------NFSDSLQQFYAYDCE 270 (331)
Q Consensus 215 l~~~~~~~~-~--------~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~-------------~~~~~L~~L~l~~~~ 270 (331)
+..++.... . .+...-...++|++|++++|.+.+ ..|..+. ..+++++.|++++|+
T Consensus 249 l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~ 328 (454)
T 1jl5_A 249 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 328 (454)
T ss_dssp CSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC
T ss_pred CCcccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc
Confidence 886532110 0 000000112456666666666554 2221111 112356666666666
Q ss_pred ccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeee--cCCccccCC
Q 036258 271 LKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQG--SIPSDLCHW 330 (331)
Q Consensus 271 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~~ 330 (331)
+.+ +|.. +++|+.|++++|.++ .+|. .+++|++|++++|++++ .+|+++.++
T Consensus 329 l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 329 LIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp CSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred ccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 663 4433 467788888888887 5665 36789999999999987 788777543
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=6.7e-23 Score=172.84 Aligned_cols=203 Identities=26% Similarity=0.326 Sum_probs=157.1
Q ss_pred CCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCC
Q 036258 79 LPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL 158 (331)
Q Consensus 79 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 158 (331)
....+.++++++.++ .+|..+. +++++|++++|.++...+..|..+++|++|++++|... .++..++..+++|
T Consensus 15 ~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----~i~~~~~~~l~~L 87 (270)
T 2o6q_A 15 NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ----TLPAGIFKELKNL 87 (270)
T ss_dssp ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS----CCCTTTTSSCTTC
T ss_pred CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC----eeChhhhcCCCCC
Confidence 356789999999887 5665553 68999999999998666678888999999999776654 4455555578889
Q ss_pred cEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCc
Q 036258 159 KWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLK 237 (331)
Q Consensus 159 ~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~ 237 (331)
++|++++|.+..++ ..+..+++|++|++++|.+....+..|..+++|++|++++|.+..++. ..+..+++|+
T Consensus 88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~ 160 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-------GVFDKLTSLK 160 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCC
T ss_pred CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-------hHccCCcccc
Confidence 99999888888766 456778888888888888887777778888888888888888876432 2367788888
Q ss_pred EEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258 238 VLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN 296 (331)
Q Consensus 238 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 296 (331)
+|++++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 161 ~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 161 ELRLYNNQLKRVPEGAFDKLT-ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eeEecCCcCcEeChhHhccCC-CcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 888888888765555566555 7888888888887555556777888888888888876
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=6.9e-24 Score=179.09 Aligned_cols=224 Identities=21% Similarity=0.289 Sum_probs=134.0
Q ss_pred ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccC
Q 036258 57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG 136 (331)
Q Consensus 57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 136 (331)
+..+.+.++.+.+.... ..+++|+.|++++|.+.. . ..+..+++|++|++++|.+.+ + ..+..+++|++|++
T Consensus 21 l~~l~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L- 92 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLIL- 92 (272)
T ss_dssp HHHHHHTCSCTTSEECH---HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEEC-
T ss_pred HHHHHhcCccccccccc---ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEEC-
Confidence 44455556655532222 457888888888887763 2 347778888888888887763 1 24444455555555
Q ss_pred ccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcc
Q 036258 137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL 215 (331)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l 215 (331)
++|.++.++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 93 ---------------------------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 145 (272)
T 3rfs_A 93 ---------------------------TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145 (272)
T ss_dssp ---------------------------TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ---------------------------CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc
Confidence 444444333 2345555555555555555555445555556666666666655
Q ss_pred cCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCC
Q 036258 216 TTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDL 295 (331)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 295 (331)
...+ +..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+.+..+..+..+++|+.|++++|++
T Consensus 146 ~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 146 QSLP-------KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT-QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCCC-------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccC-------HHHhccCccCCEEECCCCCcCccCHHHhcCCc-cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 5432 12245556666666666666544444444444 666666666666655555666777777777777766
Q ss_pred cccCCcCccCCCCCCeEeccCCeeeecCCccccCC
Q 036258 296 NGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHW 330 (331)
Q Consensus 296 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~ 330 (331)
.+ .++.|+.+++..|.++|.+|.+++++
T Consensus 218 ~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 218 DC-------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 52 34567777777777777777766654
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=4.4e-27 Score=213.59 Aligned_cols=217 Identities=20% Similarity=0.215 Sum_probs=108.9
Q ss_pred cCCCCCcEEEccCCcccccCCccC-----cCCCCCCEEEccCcccccc----CCccccCcccccccccCcccccccccc-
Q 036258 77 NRLPSLEQLVLRSNGFFGQIPLSL-----SKCTQLQHLWLEHNKFTGR----LPENIGNLSKLRSLVLGHKAHNSLHGH- 146 (331)
Q Consensus 77 ~~~~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~- 146 (331)
..+++|++|++++|.+....+..+ ...++|++|++++|.++.. ++..+..+++|++|++++|........
T Consensus 110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 189 (461)
T 1z7x_W 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV 189 (461)
T ss_dssp TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHH
Confidence 445555555555554432211111 1233455555555544432 133344456666666655443321110
Q ss_pred CCcchhcCCCCCcEEEcCCCCCCC-----CcccccCCCCCceeeCcCccccccC-----chhccCCCCCCEEEccCCccc
Q 036258 147 LPSTLSVSLPNLKWLALGMNKLRT-----IPNSITNASELTLLELGKNSFSGLV-----PNTFGNLRFLSLLDLGNNYLT 216 (331)
Q Consensus 147 ~~~~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~~~~-----~~~l~~~~~L~~L~l~~~~l~ 216 (331)
+...+....++|++|++++|.++. ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++
T Consensus 190 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 190 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 111111235577777777777764 3555666778888888887765432 222334677778888777766
Q ss_pred CccCCCccccccccccCCCCcEEEeecccccccCCchhhhc----cccccEEEeccCccccc----CCccccCCCCCCEE
Q 036258 217 TRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNF----SDSLQQFYAYDCELKGS----IPQEIGNLNGLIDL 288 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L 288 (331)
..+.. .++..+..+++|++|++++|.+.+..+..+... .++|++|++++|.+++. ++..+..+++|++|
T Consensus 270 ~~~~~---~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 270 AKGCG---DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp HHHHH---HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred HHHHH---HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 42110 134445566777777777776654433333222 12455555555554432 23333344444444
Q ss_pred EccCCCCc
Q 036258 289 RLQDNDLN 296 (331)
Q Consensus 289 ~l~~n~l~ 296 (331)
++++|.+.
T Consensus 347 ~Ls~n~i~ 354 (461)
T 1z7x_W 347 QISNNRLE 354 (461)
T ss_dssp ECCSSBCH
T ss_pred EccCCccc
Confidence 44444443
No 73
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2.1e-25 Score=196.12 Aligned_cols=243 Identities=17% Similarity=0.142 Sum_probs=134.4
Q ss_pred cCCCCccEEEcCCCcCccCCCh----hhhcCCC-CCcEEEccCCcccccCCccCcCC-----CCCCEEEccCccccccCC
Q 036258 52 YNISSLKMIRLSSNSLSGSLPN----DLCNRLP-SLEQLVLRSNGFFGQIPLSLSKC-----TQLQHLWLEHNKFTGRLP 121 (331)
Q Consensus 52 ~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~-~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~ 121 (331)
...++|++|++++|.+. ..+. ..|..++ +|++|++++|.+.+..+..+..+ ++|++|++++|.++...+
T Consensus 19 ~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred hCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 33344777777777776 4443 3445666 67777777777765555555443 677777777777765444
Q ss_pred cccc----Cc-ccccccccCccccccccccCCcchhcC-CCCCcEEEcCCCCCC-----CCcccccCCC-CCceeeCcCc
Q 036258 122 ENIG----NL-SKLRSLVLGHKAHNSLHGHLPSTLSVS-LPNLKWLALGMNKLR-----TIPNSITNAS-ELTLLELGKN 189 (331)
Q Consensus 122 ~~~~----~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-----~~~~~~~~l~-~L~~L~l~~n 189 (331)
..+. .+ ++|++|++++|.............+.. ..+|++|++++|.+. .++..+...+ +|++|++++|
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 4332 33 677777776555443322111122222 246777777777665 2233344444 6777777777
Q ss_pred cccccCch----hccCC-CCCCEEEccCCcccCccCCCcccccccccc-CCCCcEEEeecccccccCCchhhhc---ccc
Q 036258 190 SFSGLVPN----TFGNL-RFLSLLDLGNNYLTTRSSTTEWSFLSSLTN-CIYLKVLGLHSNQLSGILPPLIGNF---SDS 260 (331)
Q Consensus 190 ~~~~~~~~----~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~---~~~ 260 (331)
.+.+..+. .+... ++|++|++++|.+...+.. .++..+.. .++|++|++++|.+.+..+..+... .+.
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~---~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA---ELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH---HHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH---HHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 66654443 23333 3677777777766642211 23334444 3467777777777664443222211 126
Q ss_pred ccEEEeccCcccc-------cCCccccCCCCCCEEEccCCCCccc
Q 036258 261 LQQFYAYDCELKG-------SIPQEIGNLNGLIDLRLQDNDLNGT 298 (331)
Q Consensus 261 L~~L~l~~~~~~~-------~~~~~l~~l~~L~~L~l~~n~l~~~ 298 (331)
|+.|++++|.+.+ .++..+..+++|+.|++++|.+.+.
T Consensus 255 L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 7777777766332 2233455666666777777776643
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=3.9e-26 Score=207.36 Aligned_cols=269 Identities=20% Similarity=0.173 Sum_probs=170.3
Q ss_pred hhcCCCCccEEEcCCCcCccCCCh----hhhcCCCCCcEEEccCCccccc----CCccCcCCCCCCEEEccCccccccCC
Q 036258 50 CFYNISSLKMIRLSSNSLSGSLPN----DLCNRLPSLEQLVLRSNGFFGQ----IPLSLSKCTQLQHLWLEHNKFTGRLP 121 (331)
Q Consensus 50 ~~~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~ 121 (331)
.|..+++|++|++++|.+.+..+. .++...++|++|++++|.+... ++..+..+++|++|++++|.+....+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 578889999999999988643232 2333466899999999988753 24556677899999999988764433
Q ss_pred cccc-----CcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCC------cccccCCCCCceeeCcCcc
Q 036258 122 ENIG-----NLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI------PNSITNASELTLLELGKNS 190 (331)
Q Consensus 122 ~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~------~~~~~~l~~L~~L~l~~n~ 190 (331)
..+. ..++|++|++++|.............+..+++|++|++++|.+... +..+..+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 3332 2558888888766554322111122233677888888888876521 1222346788888888887
Q ss_pred cccc----CchhccCCCCCCEEEccCCcccCccCCCcccccccc-ccCCCCcEEEeeccccccc----CCchhhhccccc
Q 036258 191 FSGL----VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSL-TNCIYLKVLGLHSNQLSGI----LPPLIGNFSDSL 261 (331)
Q Consensus 191 ~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L 261 (331)
+... .+..+..+++|++|++++|.+...+.. .+...+ ...++|++|++++|.+++. ++..+...+ +|
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~---~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L 343 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR---LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR-FL 343 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH---HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS-SC
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH---HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC-Cc
Confidence 7643 345566677788888888776542110 111111 1235777777777777654 233333334 77
Q ss_pred cEEEeccCcccccCCccccC-----CCCCCEEEccCCCCcc----cCCcCccCCCCCCeEeccCCeeeec
Q 036258 262 QQFYAYDCELKGSIPQEIGN-----LNGLIDLRLQDNDLNG----TIPTTVGRLQQLQGLFLFGNNLQGS 322 (331)
Q Consensus 262 ~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~ 322 (331)
++|++++|.+.+..+..+.. .++|+.|++++|.+++ .++..+..+++|++|++++|++++.
T Consensus 344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 77777777776544443332 5677777777777774 5566666677777777777777643
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.6e-22 Score=172.08 Aligned_cols=203 Identities=22% Similarity=0.214 Sum_probs=170.1
Q ss_pred hcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCC
Q 036258 76 CNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSL 155 (331)
Q Consensus 76 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 155 (331)
+..+++++.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+..+... ..+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~l 76 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD------GTL 76 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC------SCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC------CCC
Confidence 367899999999999987 5665553 6899999999999977788899999999999988777654321 378
Q ss_pred CCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCC
Q 036258 156 PNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIY 235 (331)
Q Consensus 156 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~ 235 (331)
++|++|++++|.+..+|..+..+++|++|++++|++....+..|..+++|++|++++|.+..++. ..+..+++
T Consensus 77 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~ 149 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-------GLLTPTPK 149 (290)
T ss_dssp TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-------TTTTTCTT
T ss_pred CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh-------hhcccccC
Confidence 99999999999999999888899999999999999998877889999999999999999887533 34678899
Q ss_pred CcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258 236 LKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN 296 (331)
Q Consensus 236 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 296 (331)
|++|++++|++.+..+..+..+. +|++|++++|.++ .+|..+..+++|+.|++.+|++.
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~-~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLE-NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCT-TCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCEEECCCCcCCccCHHHhcCcC-CCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 99999999998854444555555 8999999999888 67778888888899999988876
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4e-23 Score=174.36 Aligned_cols=210 Identities=23% Similarity=0.318 Sum_probs=152.9
Q ss_pred hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccc
Q 036258 50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK 129 (331)
Q Consensus 50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 129 (331)
....+++|+.|+++++.+. .++. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp CHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 3667899999999999987 6654 36799999999999998753 47889999999999999999766667788888
Q ss_pred ccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEE
Q 036258 130 LRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLL 208 (331)
Q Consensus 130 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 208 (331)
|++|++++|... .++...+..+++|++|++++|.++.++ ..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus 111 L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 111 LKELVLVENQLQ----SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp CCEEECTTSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEECCCCcCC----ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 888888666554 333444446777888888887777655 345677777777777777776666666777777777
Q ss_pred EccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCC
Q 036258 209 DLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLN 283 (331)
Q Consensus 209 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 283 (331)
++++|.+...+ +..+..+++|++|++++|.+.+..| .++.+++..|.+.+.+|.+++.+.
T Consensus 187 ~L~~N~l~~~~-------~~~~~~l~~L~~L~l~~N~~~~~~~--------~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 187 RLYQNQLKSVP-------DGVFDRLTSLQYIWLHDNPWDCTCP--------GIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp ECCSSCCSCCC-------TTTTTTCTTCCEEECCSSCBCCCTT--------TTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ECCCCcCCccC-------HHHHhCCcCCCEEEccCCCccccCc--------HHHHHHHHHHhCCCcccCcccccC
Confidence 77777776532 2335667777777777776653322 456666666666666666665544
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=3.9e-22 Score=185.75 Aligned_cols=228 Identities=25% Similarity=0.296 Sum_probs=174.2
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
.++++|+++++.++ .+|..+ .++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCC---CTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhh---CCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEE
Confidence 46899999999998 999876 389999999999998 4554 5789999999999998 4565 678999999
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 214 (331)
+++|.+..+. . .+++|++|++++|.++.+|.. +++|++|++++|.+.+. |. .+.+|+.|++++|.
T Consensus 108 Ls~N~l~~l~----~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 108 IFSNPLTHLP----A----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQ 172 (622)
T ss_dssp ECSCCCCCCC----C----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSC
T ss_pred CcCCcCCCCC----C----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCC
Confidence 9877766443 2 568999999999999988864 48999999999998854 32 35789999999999
Q ss_pred ccCccCCCccccccccccCCCCcEEEeecccccccCCchhh----------------hccccccEEEeccCcccccCCcc
Q 036258 215 LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIG----------------NFSDSLQQFYAYDCELKGSIPQE 278 (331)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~----------------~~~~~L~~L~l~~~~~~~~~~~~ 278 (331)
++.++ ..+++|+.|++++|.+.+ +|..+. ...++|+.|++++|.+++ +|
T Consensus 173 l~~l~-----------~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp-- 237 (622)
T 3g06_A 173 LTSLP-----------MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP-- 237 (622)
T ss_dssp CSCCC-----------CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC--
T ss_pred CCCCc-----------ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC--
Confidence 98753 224556666666666552 222111 011367777888777763 55
Q ss_pred ccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCccccCC
Q 036258 279 IGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHW 330 (331)
Q Consensus 279 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~ 330 (331)
..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|+.+.++
T Consensus 238 -~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l 283 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHL 283 (622)
T ss_dssp -CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGS
T ss_pred -CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhc
Confidence 45577888888888888 5665 5678999999999998 888877665
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.2e-24 Score=187.73 Aligned_cols=255 Identities=18% Similarity=0.169 Sum_probs=199.4
Q ss_pred CCccEEEcCCCcCccCCChhhhcCC--CCCcEEEccCCcccccCCccCcCCCCCCEEEccCcccccc-CCccccCccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRL--PSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGR-LPENIGNLSKLR 131 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~ 131 (331)
..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.++.. ++..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 45889999998775 2333556 8999999999998866554 56799999999999998754 777888999999
Q ss_pred ccccCccccccccccCCcchhcCCCCCcEEEcCCC-CCC--CCcccccCCCCCceeeCcCc-ccccc-CchhccCCC-CC
Q 036258 132 SLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN-KLR--TIPNSITNASELTLLELGKN-SFSGL-VPNTFGNLR-FL 205 (331)
Q Consensus 132 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~--~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~~~-~L 205 (331)
+|+++++.. .+..+..+. .+++|++|++++| .++ .++..+..+++|++|++++| .+.+. .+..+..++ +|
T Consensus 122 ~L~L~~~~l---~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 122 NLSLEGLRL---SDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp EEECTTCBC---CHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred EEeCcCccc---CHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 999976643 333334343 6899999999999 676 36677888999999999999 88753 466678889 99
Q ss_pred CEEEccCCc--ccCccCCCccccccccccCCCCcEEEeeccc-ccccCCchhhhccccccEEEeccCc-ccccCCccccC
Q 036258 206 SLLDLGNNY--LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ-LSGILPPLIGNFSDSLQQFYAYDCE-LKGSIPQEIGN 281 (331)
Q Consensus 206 ~~L~l~~~~--l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~ 281 (331)
++|++++|. ++.. .++..+..+++|++|++++|. +++..+..+..++ +|++|++++|. +.......+..
T Consensus 198 ~~L~l~~~~~~~~~~------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~ 270 (336)
T 2ast_B 198 TQLNLSGYRKNLQKS------DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELGE 270 (336)
T ss_dssp CEEECCSCGGGSCHH------HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTCTTCCGGGGGGGGG
T ss_pred CEEEeCCCcccCCHH------HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC-CCCEeeCCCCCCCCHHHHHHHhc
Confidence 999999994 4321 455667889999999999999 7777777888776 99999999995 44333346888
Q ss_pred CCCCCEEEccCCCCcccCCcCccCCC-CCCeEeccCCeeeecCCccccC
Q 036258 282 LNGLIDLRLQDNDLNGTIPTTVGRLQ-QLQGLFLFGNNLQGSIPSDLCH 329 (331)
Q Consensus 282 l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~ 329 (331)
+++|+.|++++| +.. +.+..+. .++.|++++|.+++..|..+.+
T Consensus 271 ~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 271 IPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 999999999999 442 2344443 4778889999999999987764
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=9.7e-26 Score=200.13 Aligned_cols=89 Identities=24% Similarity=0.235 Sum_probs=43.0
Q ss_pred hcCCCCccEEEcCCCcCccCCChh---hhcCCCCCcEEEccCCcc---cccCCccC-------cCCCCCCEEEccCcccc
Q 036258 51 FYNISSLKMIRLSSNSLSGSLPND---LCNRLPSLEQLVLRSNGF---FGQIPLSL-------SKCTQLQHLWLEHNKFT 117 (331)
Q Consensus 51 ~~~~~~L~~L~l~~~~i~~~~~~~---~~~~~~~L~~L~L~~n~i---~~~~~~~~-------~~l~~L~~L~l~~n~~~ 117 (331)
+..+++|++|++++|.+.+..+.. .+..+++|++|+|++|.+ .+..|..+ ..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 444555666666666554321111 124456666666665422 22233222 45556666666665555
Q ss_pred c----cCCccccCcccccccccCccc
Q 036258 118 G----RLPENIGNLSKLRSLVLGHKA 139 (331)
Q Consensus 118 ~----~~~~~~~~l~~L~~L~l~~~~ 139 (331)
. .++..+..+++|++|++++|.
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 3 233444455555555554443
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=5.1e-23 Score=170.44 Aligned_cols=206 Identities=17% Similarity=0.254 Sum_probs=124.0
Q ss_pred CccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCcc-ccccCCccccCcccccccccCc-ccccccc
Q 036258 67 LSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNK-FTGRLPENIGNLSKLRSLVLGH-KAHNSLH 144 (331)
Q Consensus 67 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~ 144 (331)
++ .+|. + .++|++|++++|.+++..+..|..+++|++|++++|. ++...+..|.++++|++|++++ |....
T Consensus 23 l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-- 95 (239)
T 2xwt_C 23 IQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-- 95 (239)
T ss_dssp CS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE--
T ss_pred cc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE--
Confidence 54 6665 3 3478888888888876666677788888888888885 6644444566666666666643 33321
Q ss_pred ccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCC---EEEccCC-cccCccC
Q 036258 145 GHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLS---LLDLGNN-YLTTRSS 220 (331)
Q Consensus 145 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~---~L~l~~~-~l~~~~~ 220 (331)
++...+..+++|++|++++|.+..+|. +..+++|+ +|++++| .+..++.
T Consensus 96 --i~~~~f~~l~~L~~L~l~~n~l~~lp~-------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~ 148 (239)
T 2xwt_C 96 --IDPDALKELPLLKFLGIFNTGLKMFPD-------------------------LTKVYSTDIFFILEITDNPYMTSIPV 148 (239)
T ss_dssp --ECTTSEECCTTCCEEEEEEECCCSCCC-------------------------CTTCCBCCSEEEEEEESCTTCCEECT
T ss_pred --cCHHHhCCCCCCCEEeCCCCCCccccc-------------------------cccccccccccEEECCCCcchhhcCc
Confidence 222222344444444444444444333 44444444 5555555 5544321
Q ss_pred CCccccccccccCCCCc-EEEeecccccccCCchhhhccccccEEEeccCc-ccccCCccccCC-CCCCEEEccCCCCcc
Q 036258 221 TTEWSFLSSLTNCIYLK-VLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCE-LKGSIPQEIGNL-NGLIDLRLQDNDLNG 297 (331)
Q Consensus 221 ~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~l~~n~l~~ 297 (331)
..+..+++|+ +|++++|.+. .+|...... ++|+.|++++|. +.+..+..+.++ ++|+.|++++|.++
T Consensus 149 -------~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~- 218 (239)
T 2xwt_C 149 -------NAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT- 218 (239)
T ss_dssp -------TTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-
T ss_pred -------ccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-
Confidence 2255566666 6666666665 333333333 377777777774 765556677778 88888888888888
Q ss_pred cCCcCccCCCCCCeEeccCCe
Q 036258 298 TIPTTVGRLQQLQGLFLFGNN 318 (331)
Q Consensus 298 ~~~~~l~~l~~L~~L~l~~n~ 318 (331)
.+|.. .+++|+.|+++++.
T Consensus 219 ~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 219 ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCT--TCTTCSEEECTTC-
T ss_pred cCChh--HhccCceeeccCcc
Confidence 55543 56778888887764
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.7e-24 Score=188.24 Aligned_cols=260 Identities=15% Similarity=0.147 Sum_probs=194.9
Q ss_pred EEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCC----ccCcCCC-CCCEEEccCccccccCCccccCc-----c
Q 036258 59 MIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIP----LSLSKCT-QLQHLWLEHNKFTGRLPENIGNL-----S 128 (331)
Q Consensus 59 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~ 128 (331)
.++++++.+++.+|... ...++|++|++++|.+....+ ..+..++ +|++|++++|.++...+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 46788999986666544 666679999999999986655 6778888 99999999999987767777665 8
Q ss_pred cccccccCccccccccccCCcchhcCC-CCCcEEEcCCCCCCCCc-c----cccC-CCCCceeeCcCccccccCc----h
Q 036258 129 KLRSLVLGHKAHNSLHGHLPSTLSVSL-PNLKWLALGMNKLRTIP-N----SITN-ASELTLLELGKNSFSGLVP----N 197 (331)
Q Consensus 129 ~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~-~----~~~~-l~~L~~L~l~~n~~~~~~~----~ 197 (331)
+|++|++++|.............+..+ ++|++|++++|.++..+ . .+.. .++|++|++++|.+.+... .
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 999999987776543322222223344 89999999999988544 2 2344 3699999999999985433 4
Q ss_pred hccCCC-CCCEEEccCCcccCccCCCccccccccccC-CCCcEEEeeccccccc----CCchhhhccccccEEEeccCcc
Q 036258 198 TFGNLR-FLSLLDLGNNYLTTRSSTTEWSFLSSLTNC-IYLKVLGLHSNQLSGI----LPPLIGNFSDSLQQFYAYDCEL 271 (331)
Q Consensus 198 ~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~~~~ 271 (331)
.+..++ +|++|++++|.++..... .+...+..+ ++|++|++++|.+.+. ++..+...+++|++|++++|.+
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~---~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCA---ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHH---HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHhcCCccccEeeecCCCCchhhHH---HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 445555 899999999998864321 233345566 5999999999999863 4445555445999999999999
Q ss_pred cccCC----ccccCCCCCCEEEccCCCCcc-------cCCcCccCCCCCCeEeccCCeeeec
Q 036258 272 KGSIP----QEIGNLNGLIDLRLQDNDLNG-------TIPTTVGRLQQLQGLFLFGNNLQGS 322 (331)
Q Consensus 272 ~~~~~----~~l~~l~~L~~L~l~~n~l~~-------~~~~~l~~l~~L~~L~l~~n~~~~~ 322 (331)
.+..+ ..+..+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+.+.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 86544 445778999999999998442 3445677889999999999998865
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.2e-24 Score=191.35 Aligned_cols=262 Identities=22% Similarity=0.266 Sum_probs=194.7
Q ss_pred ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCccccc----CCccCcCCCCCCEEEccCccc---cccCCccc-----
Q 036258 57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQ----IPLSLSKCTQLQHLWLEHNKF---TGRLPENI----- 124 (331)
Q Consensus 57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~---~~~~~~~~----- 124 (331)
|+...++...+. .++..+ ..+++|++|++++|.+... ++..+..+++|++|++++|.+ ++.+|..+
T Consensus 11 L~~~~l~~~~~~-~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 11 LKLDAITTEDEK-SVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CEESSCCSHHHH-TTSHHH-HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred cccCCCCHHHHH-HHHHHH-hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 333333333443 566655 6789999999999998754 334577899999999999744 34445444
Q ss_pred --cCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC-----CcccccCC---------CCCceeeCcC
Q 036258 125 --GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT-----IPNSITNA---------SELTLLELGK 188 (331)
Q Consensus 125 --~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~l---------~~L~~L~l~~ 188 (331)
..+++|++|++++|.+...........+..+++|++|++++|.+.. ++..+..+ ++|++|++++
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 6889999999987766543222122233478999999999999862 33344444 8999999999
Q ss_pred ccccc-cCc---hhccCCCCCCEEEccCCcccCccCCCcccccc-ccccCCCCcEEEeeccccc----ccCCchhhhccc
Q 036258 189 NSFSG-LVP---NTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLS-SLTNCIYLKVLGLHSNQLS----GILPPLIGNFSD 259 (331)
Q Consensus 189 n~~~~-~~~---~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~ 259 (331)
|.+.. ..+ ..+..+++|++|++++|.+...+.. .+.. .+..+++|++|+|++|.++ ..+|..+..++
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~---~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~- 244 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE---HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP- 244 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHH---HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHH---HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-
Confidence 99873 333 4667888999999999988732100 1222 6888999999999999996 56777777766
Q ss_pred cccEEEeccCccccc----CCcccc--CCCCCCEEEccCCCCcc----cCCcCc-cCCCCCCeEeccCCeeeecCC
Q 036258 260 SLQQFYAYDCELKGS----IPQEIG--NLNGLIDLRLQDNDLNG----TIPTTV-GRLQQLQGLFLFGNNLQGSIP 324 (331)
Q Consensus 260 ~L~~L~l~~~~~~~~----~~~~l~--~l~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~~~~~~p 324 (331)
+|++|++++|.+++. ++..+. .+++|+.|++++|.+++ .+|..+ ..+++|++|++++|++++..|
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999999999999865 456663 48999999999999996 377766 568999999999999996653
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=8.1e-23 Score=175.84 Aligned_cols=226 Identities=16% Similarity=0.118 Sum_probs=174.4
Q ss_pred CCCCccEEEcCCCcCccC----CChhhhcCCCCCcEEEccCCcccccCCccC--cCCCCCCEEEccCccccccCC----c
Q 036258 53 NISSLKMIRLSSNSLSGS----LPNDLCNRLPSLEQLVLRSNGFFGQIPLSL--SKCTQLQHLWLEHNKFTGRLP----E 122 (331)
Q Consensus 53 ~~~~L~~L~l~~~~i~~~----~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~ 122 (331)
+...++.+.+.++.+... +... ..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ .
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRV--LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHH--HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHh--cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 334578899988877521 1121 135779999999999998888888 899999999999999986444 3
Q ss_pred cccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC---Cc--ccccCCCCCceeeCcCccccccCc-
Q 036258 123 NIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT---IP--NSITNASELTLLELGKNSFSGLVP- 196 (331)
Q Consensus 123 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~---~~--~~~~~l~~L~~L~l~~n~~~~~~~- 196 (331)
.+..+++|++|++++|... .++...+..+++|++|++++|.+.. ++ ..+..+++|++|++++|.+....+
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 215 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSP----AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV 215 (310)
T ss_dssp HTTBCSCCCEEEEECCSSC----CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH
T ss_pred HhhhccCCCEEEeeCCCcc----hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH
Confidence 4567899999999776664 3334444589999999999998752 22 334678999999999999963322
Q ss_pred -h-hccCCCCCCEEEccCCcccCccCCCccccccccccC---CCCcEEEeecccccccCCchhhhccccccEEEeccCcc
Q 036258 197 -N-TFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC---IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCEL 271 (331)
Q Consensus 197 -~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~ 271 (331)
. .+..+++|++|++++|.+... .|..+..+ ++|++|++++|.+. .+|..+. ++|+.|++++|++
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~-------~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l 284 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRAT-------VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRL 284 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCC-------CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCcc-------chhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcC
Confidence 1 356789999999999999874 23334444 79999999999998 6677664 4999999999999
Q ss_pred cccCCccccCCCCCCEEEccCCCCcc
Q 036258 272 KGSIPQEIGNLNGLIDLRLQDNDLNG 297 (331)
Q Consensus 272 ~~~~~~~l~~l~~L~~L~l~~n~l~~ 297 (331)
++ +|. +..+++|+.|++++|++++
T Consensus 285 ~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 285 NR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred CC-Cch-hhhCCCccEEECcCCCCCC
Confidence 84 344 6888999999999999973
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=7.9e-22 Score=169.39 Aligned_cols=195 Identities=22% Similarity=0.324 Sum_probs=150.6
Q ss_pred hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258 51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL 130 (331)
Q Consensus 51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 130 (331)
+.++++|++|+++++.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ + ..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCC
Confidence 567789999999999998 6763 4779999999999999875433 8899999999999999874 3 367888889
Q ss_pred cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEc
Q 036258 131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDL 210 (331)
Q Consensus 131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 210 (331)
++|++++|....+. . +..+++|++|++++|.+..++. +..+++|+.|++++|.+.+..+ +..+++|++|++
T Consensus 110 ~~L~l~~n~l~~~~----~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l 180 (308)
T 1h6u_A 110 KTLDLTSTQITDVT----P--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180 (308)
T ss_dssp CEEECTTSCCCCCG----G--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CEEECCCCCCCCch----h--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEEC
Confidence 99998777665432 1 3478888888888888887665 7778888888888888875433 778888888888
Q ss_pred cCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccc
Q 036258 211 GNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKG 273 (331)
Q Consensus 211 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 273 (331)
++|.+..+ + .+..+++|++|++++|.+.+..+ +..++ +|+.|++++|.+++
T Consensus 181 ~~n~l~~~--------~-~l~~l~~L~~L~L~~N~l~~~~~--l~~l~-~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 181 DDNKISDI--------S-PLASLPNLIEVHLKNNQISDVSP--LANTS-NLFIVTLTNQTITN 231 (308)
T ss_dssp CSSCCCCC--------G-GGGGCTTCCEEECTTSCCCBCGG--GTTCT-TCCEEEEEEEEEEC
T ss_pred CCCccCcC--------h-hhcCCCCCCEEEccCCccCcccc--ccCCC-CCCEEEccCCeeec
Confidence 88887753 1 16778888888888888874442 45554 88888888888763
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=173.32 Aligned_cols=233 Identities=21% Similarity=0.207 Sum_probs=180.0
Q ss_pred CCCCcEEEccCCcccccCCc---cCcCCCCCCEEEccCccccccCCccc--cCcccccccccCccccccccccCCcchhc
Q 036258 79 LPSLEQLVLRSNGFFGQIPL---SLSKCTQLQHLWLEHNKFTGRLPENI--GNLSKLRSLVLGHKAHNSLHGHLPSTLSV 153 (331)
Q Consensus 79 ~~~L~~L~L~~n~i~~~~~~---~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 153 (331)
...++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|........++...+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 45678888888766421100 12235679999999999998888888 89999999999777665432212222223
Q ss_pred CCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCcccccc---C-chhccCCCCCCEEEccCCcccCccCCCcccccc
Q 036258 154 SLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGL---V-PNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLS 228 (331)
Q Consensus 154 ~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~---~-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 228 (331)
.+++|++|++++|.+..++ ..+..+++|++|++++|.+.+. . +..+..+++|++|++++|.++..+. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~ 217 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-----VCA 217 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-----HHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-----HHH
Confidence 7899999999999998665 7888999999999999987542 1 2334678999999999999975321 111
Q ss_pred -ccccCCCCcEEEeecccccccCCchhhhcc--ccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccC
Q 036258 229 -SLTNCIYLKVLGLHSNQLSGILPPLIGNFS--DSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGR 305 (331)
Q Consensus 229 -~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 305 (331)
.+..+++|++|++++|.+.+..|..+..+. ++|++|++++|.++ .+|..+. ++|+.|++++|.+++ +|. +..
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~ 292 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDE 292 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTS
T ss_pred HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhh
Confidence 246789999999999999988787776653 59999999999999 6777764 799999999999994 444 678
Q ss_pred CCCCCeEeccCCeeee
Q 036258 306 LQQLQGLFLFGNNLQG 321 (331)
Q Consensus 306 l~~L~~L~l~~n~~~~ 321 (331)
+++|+.|++++|+++.
T Consensus 293 l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 293 LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCEECSSTTTSC
T ss_pred CCCccEEECcCCCCCC
Confidence 8999999999999874
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.9e-21 Score=166.94 Aligned_cols=207 Identities=20% Similarity=0.306 Sum_probs=159.5
Q ss_pred EcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCcccc
Q 036258 61 RLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAH 140 (331)
Q Consensus 61 ~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 140 (331)
.+..+.+.+.+.. ..+++|++|++++|.+.. ++ .+..+++|++|++++|.+... +. +..+++|++|++++|..
T Consensus 25 ~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 25 AAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HTTCSSTTSEECH---HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCC
T ss_pred HhCCCCcCceecH---HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcC
Confidence 3445555532332 358899999999999874 44 688999999999999999844 33 88999999999987776
Q ss_pred ccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccC
Q 036258 141 NSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSS 220 (331)
Q Consensus 141 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~ 220 (331)
..+. .+..+++|++|++++|.+..++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+...
T Consensus 98 ~~~~------~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-- 166 (308)
T 1h6u_A 98 KNVS------AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-- 166 (308)
T ss_dssp SCCG------GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred CCch------hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC--
Confidence 5432 23478899999999999887764 7888999999999998876533 77888999999999988753
Q ss_pred CCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcc
Q 036258 221 TTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNG 297 (331)
Q Consensus 221 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 297 (331)
+. +..+++|++|++++|.+.+..+ +..++ +|++|++++|.+.+. + .+..+++|+.|++++|++++
T Consensus 167 ------~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~-~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 167 ------TP-LANLSKLTTLKADDNKISDISP--LASLP-NLIEVHLKNNQISDV-S-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ------GG-GTTCTTCCEEECCSSCCCCCGG--GGGCT-TCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEEEEEEC
T ss_pred ------hh-hcCCCCCCEEECCCCccCcChh--hcCCC-CCCEEEccCCccCcc-c-cccCCCCCCEEEccCCeeec
Confidence 22 7788889999999998874433 55555 888888888888743 3 37888888888888888873
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.7e-21 Score=159.76 Aligned_cols=180 Identities=24% Similarity=0.318 Sum_probs=152.1
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
...++++++++.++ .+|..+ .+.++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 45789999999998 898766 47899999999999988888899999999999999999987778889999999999
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcc-cccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCC
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN-SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~ 213 (331)
+++|... .++...+..+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 90 L~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 90 LANNQLA----SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp CTTSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCccc----ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 9777665 3444555588999999999999987764 4688899999999999998777778888999999999999
Q ss_pred cccCccCCCccccccccccCCCCcEEEeeccccccc
Q 036258 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGI 249 (331)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 249 (331)
.+..++. ..+..+++|++|++++|++...
T Consensus 166 ~l~~~~~-------~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 166 QLQSVPH-------GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSCCCT-------TTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCccCH-------HHHhCCCCCCEEEeeCCceeCC
Confidence 8886432 3477889999999999998755
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=2.8e-21 Score=159.97 Aligned_cols=165 Identities=19% Similarity=0.255 Sum_probs=129.7
Q ss_pred CCCCCcEEEcCCCC-CCCCc-ccccCCCCCceeeCcC-ccccccCchhccCCCCCCEEEccCCcccCccCCCcccccccc
Q 036258 154 SLPNLKWLALGMNK-LRTIP-NSITNASELTLLELGK-NSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSL 230 (331)
Q Consensus 154 ~l~~L~~L~l~~~~-l~~~~-~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 230 (331)
.+++|++|++++|. ++.++ ..+..+++|++|++++ |.+....+..|..+++|++|++++|.+..+ +. +
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~l--------p~-~ 123 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF--------PD-L 123 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSC--------CC-C
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccc--------cc-c
Confidence 45566666666665 65554 4677888899999988 888877778888999999999999988863 32 6
Q ss_pred ccCCCCc---EEEeecc-cccccCCchhhhcccccc-EEEeccCcccccCCccccCCCCCCEEEccCCC-CcccCCcCcc
Q 036258 231 TNCIYLK---VLGLHSN-QLSGILPPLIGNFSDSLQ-QFYAYDCELKGSIPQEIGNLNGLIDLRLQDND-LNGTIPTTVG 304 (331)
Q Consensus 231 ~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~ 304 (331)
..+++|+ +|++++| .+.+..+..+..+. +++ .|++++|.+....+..+.. ++|+.|++++|+ +++..+..|.
T Consensus 124 ~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~ 201 (239)
T 2xwt_C 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFG 201 (239)
T ss_dssp TTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTT
T ss_pred ccccccccccEEECCCCcchhhcCcccccchh-cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhh
Confidence 6777777 9999999 88866666677776 999 9999999998433444444 899999999995 9866667889
Q ss_pred CC-CCCCeEeccCCeeeecCCcc-ccCC
Q 036258 305 RL-QQLQGLFLFGNNLQGSIPSD-LCHW 330 (331)
Q Consensus 305 ~l-~~L~~L~l~~n~~~~~~p~~-~~~~ 330 (331)
.+ ++|+.|++++|+++ .+|.. +.++
T Consensus 202 ~l~~~L~~L~l~~N~l~-~l~~~~~~~L 228 (239)
T 2xwt_C 202 GVYSGPSLLDVSQTSVT-ALPSKGLEHL 228 (239)
T ss_dssp TCSBCCSEEECTTCCCC-CCCCTTCTTC
T ss_pred ccccCCcEEECCCCccc-cCChhHhccC
Confidence 99 99999999999999 67753 4443
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=2e-20 Score=155.94 Aligned_cols=178 Identities=24% Similarity=0.317 Sum_probs=104.6
Q ss_pred CCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCce
Q 036258 105 QLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTL 183 (331)
Q Consensus 105 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~ 183 (331)
..++++++++.++ .+|..+. +.+++|++++|....+ +...+..+++|++|++++|.+..++ ..+..+++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATL----SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCcc----CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 4567777777776 4555443 4666777755544322 2223335666666666666666443 34566666666
Q ss_pred eeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccE
Q 036258 184 LELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQ 263 (331)
Q Consensus 184 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 263 (331)
|++++|.+....+..+..+++|++|++++|.+..++. ..+..+++|++|++++|.+.+..+..+..++ +|++
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~ 159 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-------GVFDRLTKLKELRLNTNQLQSIPAGAFDKLT-NLQT 159 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCE
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh-------hHhccCCcccEEECcCCcCCccCHHHcCcCc-CCCE
Confidence 6666666665555566666666666666666664322 2245566666666666666644444454444 6666
Q ss_pred EEeccCcccccCCccccCCCCCCEEEccCCCCcc
Q 036258 264 FYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNG 297 (331)
Q Consensus 264 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 297 (331)
|++++|.+.+..+..+..+++|+.|++++|++..
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 6666666664444556666666666666666653
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.8e-20 Score=163.91 Aligned_cols=237 Identities=19% Similarity=0.215 Sum_probs=144.5
Q ss_pred cEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCC-ccccCccccccc-cc
Q 036258 58 KMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLP-ENIGNLSKLRSL-VL 135 (331)
Q Consensus 58 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L-~l 135 (331)
++++.++++++ ++|.++ .+++++|+|++|+|+...+.+|.++++|++|++++|.+.+.++ ..|.+++++.++ .+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46677777776 777655 3567777777777775555567777777777777777654444 456667666553 33
Q ss_pred CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcC-ccccccCchhccCCC-CCCEEEccC
Q 036258 136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGK-NSFSGLVPNTFGNLR-FLSLLDLGN 212 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~~~-~L~~L~l~~ 212 (331)
.+|... .++...+..+++|++|++++|.+..++ ..+....++..+++.+ +.+....+..|..+. .++.|++++
T Consensus 88 ~~N~l~----~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 88 KANNLL----YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EETTCC----EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred cCCccc----ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 233333 334445556777777777777777554 3344445666666644 455555555555553 477777777
Q ss_pred CcccCccCCCccccccccccCCCCcEEEeec-ccccccCCc-hhhhccccccEEEeccCcccccCCccccCCCCCCEEEc
Q 036258 213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHS-NQLSGILPP-LIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRL 290 (331)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 290 (331)
|.++.++. ......+|+++++.+ |.+. .+|. .+..+. +|+.|++++|+++ .+|.. .+.+|+.|.+
T Consensus 164 N~i~~i~~--------~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~-~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~ 230 (350)
T 4ay9_X 164 NGIQEIHN--------SAFNGTQLDELNLSDNNNLE-ELPNDVFHGAS-GPVILDISRTRIH-SLPSY--GLENLKKLRA 230 (350)
T ss_dssp SCCCEECT--------TSSTTEEEEEEECTTCTTCC-CCCTTTTTTEE-CCSEEECTTSCCC-CCCSS--SCTTCCEEEC
T ss_pred ccccCCCh--------hhccccchhHHhhccCCccc-CCCHHHhccCc-ccchhhcCCCCcC-ccChh--hhccchHhhh
Confidence 77775432 233445677777765 4444 4444 444454 7777888777776 34432 3445566665
Q ss_pred cCCCCcccCCcCccCCCCCCeEeccC
Q 036258 291 QDNDLNGTIPTTVGRLQQLQGLFLFG 316 (331)
Q Consensus 291 ~~n~l~~~~~~~l~~l~~L~~L~l~~ 316 (331)
.++.-...+|. +..+++|+.+++.+
T Consensus 231 l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 231 RSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ccCCCcCcCCC-chhCcChhhCcCCC
Confidence 55543335653 66777777777765
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=2.8e-22 Score=174.43 Aligned_cols=241 Identities=17% Similarity=0.191 Sum_probs=183.8
Q ss_pred hhcCC--CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCccccc-CCccCcCCCCCCEEEccCccccccCCccccC
Q 036258 50 CFYNI--SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQ-IPLSLSKCTQLQHLWLEHNKFTGRLPENIGN 126 (331)
Q Consensus 50 ~~~~~--~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 126 (331)
.+..+ ++++.|+++++.+.+..+ .+ ..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..
T Consensus 63 ~~~~~~~~~l~~L~l~~n~l~~~~~-~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 63 VTGRLLSQGVIAFRCPRSFMDQPLA-EH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp HHHHHHHTTCSEEECTTCEECSCCC-SC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred HHHhhhhccceEEEcCCccccccch-hh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 44555 899999999999985444 44 4699999999999998754 6777889999999999999998778888999
Q ss_pred cccccccccCccccccccccCCcchhcCCCCCcEEEcCCC-CCCC--CcccccCCC-CCceeeCcCcc--cc-ccCchhc
Q 036258 127 LSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN-KLRT--IPNSITNAS-ELTLLELGKNS--FS-GLVPNTF 199 (331)
Q Consensus 127 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~--~~~~~~~l~-~L~~L~l~~n~--~~-~~~~~~l 199 (331)
+++|++|+++++. .+.+......+..+++|++|++++| .++. ++..+..++ +|++|++++|. +. ...+..+
T Consensus 141 ~~~L~~L~L~~~~--~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 141 NSNLVRLNLSGCS--GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp CTTCSEEECTTCB--SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred CCCCCEEECCCCC--CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 9999999997652 2222112233447899999999999 8873 567788899 99999999994 44 3456677
Q ss_pred cCCCCCCEEEccCCc-ccCccCCCccccccccccCCCCcEEEeeccc-ccccCCchhhhccccccEEEeccCcccccCCc
Q 036258 200 GNLRFLSLLDLGNNY-LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ-LSGILPPLIGNFSDSLQQFYAYDCELKGSIPQ 277 (331)
Q Consensus 200 ~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 277 (331)
..+++|++|++++|. ++. ..+..+..+++|++|++++|. +.......+..++ +|+.|++++| ++.....
T Consensus 219 ~~~~~L~~L~l~~~~~l~~-------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~-i~~~~~~ 289 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKN-------DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGI-VPDGTLQ 289 (336)
T ss_dssp HHCTTCSEEECTTCTTCCG-------GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTS-SCTTCHH
T ss_pred hhCCCCCEEeCCCCCcCCH-------HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC-CCCEEeccCc-cCHHHHH
Confidence 789999999999998 554 345568889999999999995 3333333566655 9999999999 5433222
Q ss_pred cccCCCCCCEEEccCCCCcccCCcCccC
Q 036258 278 EIGNLNGLIDLRLQDNDLNGTIPTTVGR 305 (331)
Q Consensus 278 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 305 (331)
.+. ..+..|++++|.+++..|..++.
T Consensus 290 ~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 290 LLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp HHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHH--hhCcceEEecccCccccCCcccc
Confidence 222 23667779999999888776664
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=6.2e-20 Score=148.54 Aligned_cols=149 Identities=24% Similarity=0.287 Sum_probs=87.0
Q ss_pred ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccC
Q 036258 57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG 136 (331)
Q Consensus 57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 136 (331)
.+.+++++++++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 9 ~~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TTEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 467888888887 777654 5688999999998886666667888999999999888875444445556666666664
Q ss_pred ccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcc-cccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCC
Q 036258 137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN-SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213 (331)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~ 213 (331)
+|... .++...+..+++|++|++++|.+..++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 85 ~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 85 TNQLQ----SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCcCC----ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 44333 1222222244445555555444443332 2344444444444444444333333444444444444444
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=5.5e-20 Score=148.83 Aligned_cols=159 Identities=24% Similarity=0.330 Sum_probs=89.3
Q ss_pred CCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCC
Q 036258 157 NLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIY 235 (331)
Q Consensus 157 ~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~ 235 (331)
++++|++++|.+..++ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+..++. ..+..+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~ 101 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-------GVFDKLTQ 101 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTT
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH-------hHhcCccC
Confidence 4555555555555443 234555556666666655554444445555666666666665554321 22455566
Q ss_pred CcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEecc
Q 036258 236 LKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLF 315 (331)
Q Consensus 236 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 315 (331)
|++|++++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|+.|++++|++.+ .+++|+.|++.
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~ 173 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLT-QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEW 173 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHH
T ss_pred CCEEEcCCCcCcccCHhHhccCC-cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHH
Confidence 66666666666544444444444 66666666666664444446666666666666666552 34556666666
Q ss_pred CCeeeecCCccccCC
Q 036258 316 GNNLQGSIPSDLCHW 330 (331)
Q Consensus 316 ~n~~~~~~p~~~~~~ 330 (331)
.|.++|.+|+.++.+
T Consensus 174 ~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 174 INKHSGVVRNSAGSV 188 (208)
T ss_dssp HHHCTTTBBCTTSSB
T ss_pred HHhCCceeeccCccc
Confidence 666666666665543
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=7.5e-20 Score=168.46 Aligned_cols=187 Identities=25% Similarity=0.327 Sum_probs=143.0
Q ss_pred CCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcE
Q 036258 81 SLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKW 160 (331)
Q Consensus 81 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 160 (331)
+++.|++++|.+.+ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+.. ++. +. . +|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~----ip~-l~-~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST----LPE-LP-A--SLKH 124 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC----CCC-CC-T--TCCE
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC----cch-hh-c--CCCE
Confidence 89999999999885 66655 378999999999998 566 456889999997776654 333 22 2 8999
Q ss_pred EEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEE
Q 036258 161 LALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLG 240 (331)
Q Consensus 161 L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 240 (331)
|++++|.++.+|. .+++|+.|++++|.+.+. |. .+++|++|++++|.++.+ +. +. ++|++|+
T Consensus 125 L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~l--------p~-l~--~~L~~L~ 186 (571)
T 3cvr_A 125 LDVDNNQLTMLPE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTFL--------PE-LP--ESLEALD 186 (571)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC--------CC-CC--TTCCEEE
T ss_pred EECCCCcCCCCCC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCCc--------ch-hh--CCCCEEE
Confidence 9999998888776 578899999999988763 43 467899999999988763 22 33 7889999
Q ss_pred eecccccccCCchhhhccccc-------cEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCC
Q 036258 241 LHSNQLSGILPPLIGNFSDSL-------QQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRL 306 (331)
Q Consensus 241 l~~n~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 306 (331)
+++|.+. .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus 187 Ls~N~L~-~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 187 VSTNLLE-SLPA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCSSCCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CcCCCCC-chhh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 9999887 5555 332 56 88888888888 678777778888888888888887776665543
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.8e-19 Score=165.95 Aligned_cols=194 Identities=21% Similarity=0.307 Sum_probs=156.7
Q ss_pred CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258 56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL 135 (331)
Q Consensus 56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 135 (331)
+++.|++++|.++ .+|..+ +++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 8999999999998 688866 488999999999998 566 457999999999999995 676 655 9999999
Q ss_pred CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcc
Q 036258 136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL 215 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l 215 (331)
++|.+.. ++. .+++|++|++++|.++.+|. .+++|+.|++++|.+.+ +|. +. ++|++|++++|.+
T Consensus 128 s~N~l~~----lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 128 DNNQLTM----LPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp CSSCCSC----CCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCC
T ss_pred CCCcCCC----CCC----cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCC
Confidence 8776654 333 57899999999999998886 57899999999999987 455 55 8999999999999
Q ss_pred cCccCCCccccccc-cccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCC
Q 036258 216 TTRSSTTEWSFLSS-LTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLN 283 (331)
Q Consensus 216 ~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 283 (331)
+.++. . ... ....+.|+.|++++|.++ .+|..+..++ +|+.|++++|.+++.+|..+..+.
T Consensus 193 ~~lp~-~----~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 193 ESLPA-V----PVRNHHSEETEIFFRCRENRIT-HIPENILSLD-PTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SSCCC-C----C--------CCEEEECCSSCCC-CCCGGGGGSC-TTEEEECCSSSCCHHHHHHHHHHH
T ss_pred Cchhh-H----HHhhhcccccceEEecCCCcce-ecCHHHhcCC-CCCEEEeeCCcCCCcCHHHHHHhh
Confidence 86532 1 100 111223399999999998 6888888866 999999999999988888776653
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=8.1e-19 Score=143.08 Aligned_cols=152 Identities=22% Similarity=0.261 Sum_probs=101.6
Q ss_pred cEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcE
Q 036258 159 KWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKV 238 (331)
Q Consensus 159 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~ 238 (331)
+.+++.+++++.+|..+. +.++.|++++|.+....+..|..+++|++|++++|.+..+ .+..+..+++|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-------~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-------APDAFQGLRSLNS 84 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-------CTTTTTTCSSCCE
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-------CHHHhhCCcCCCE
Confidence 456666666666665443 5677777777777666666667777777777777776653 2344666777777
Q ss_pred EEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCe
Q 036258 239 LGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNN 318 (331)
Q Consensus 239 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 318 (331)
|++++|.+.+..+..+..+. +|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 77777777644444444444 77777777777776666677777777777777777775555567777777777777777
Q ss_pred ee
Q 036258 319 LQ 320 (331)
Q Consensus 319 ~~ 320 (331)
+.
T Consensus 164 ~~ 165 (220)
T 2v9t_B 164 FI 165 (220)
T ss_dssp EE
T ss_pred cC
Confidence 65
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=7.2e-19 Score=143.40 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=106.2
Q ss_pred cEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCc-hhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCc
Q 036258 159 KWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVP-NTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLK 237 (331)
Q Consensus 159 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~ 237 (331)
++++++++.++.+|..+. ..+++|++++|.+....+ ..|..+++|++|++++|.++.++ +..+..+++|+
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-------~~~~~~l~~L~ 84 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-------EGAFEGASGVN 84 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-------TTTTTTCTTCC
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-------HHHhCCCCCCC
Confidence 466677777766665442 345677777777765533 44666777777777777776532 22466777777
Q ss_pred EEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCC
Q 036258 238 VLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN 317 (331)
Q Consensus 238 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 317 (331)
+|++++|.+.+..+..+..+. +|++|++++|.+.+..|..+.++++|+.|++++|.+++..|..|..+++|+.|++++|
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEECCCCccCccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 777777777655555565555 7777777777777666777777777777777777777666777777777777777777
Q ss_pred eeeecCC
Q 036258 318 NLQGSIP 324 (331)
Q Consensus 318 ~~~~~~p 324 (331)
++++..+
T Consensus 164 ~l~c~c~ 170 (220)
T 2v70_A 164 PFNCNCY 170 (220)
T ss_dssp CEECSGG
T ss_pred CCcCCCc
Confidence 7765443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=7e-19 Score=153.79 Aligned_cols=225 Identities=16% Similarity=0.145 Sum_probs=168.7
Q ss_pred cEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcE-E
Q 036258 83 EQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKW-L 161 (331)
Q Consensus 83 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~-L 161 (331)
++++.++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|++++|.+ ...++..+|..++++++ +
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i---~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV---LEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT---CCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC---CCccChhHhhcchhhhhhh
Confidence 67888888887 667665 36899999999999965556899999999999966554 34456667778888876 5
Q ss_pred EcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccC-CcccCccCCCccccccccccCC-CCcE
Q 036258 162 ALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN-NYLTTRSSTTEWSFLSSLTNCI-YLKV 238 (331)
Q Consensus 162 ~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~~~~-~L~~ 238 (331)
.+.+|.+..++ ..|..+++|++|++++|.+....+..+.....+..+++.. +.+..++.. .+..+. .++.
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-------~f~~~~~~l~~ 158 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-------SFVGLSFESVI 158 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT-------SSTTSBSSCEE
T ss_pred cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc-------chhhcchhhhh
Confidence 56778888764 7789999999999999999877666676777888999876 466654322 355554 6889
Q ss_pred EEeecccccccCCchhhhccccccEEEeccCcccccCC-ccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCC
Q 036258 239 LGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIP-QEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN 317 (331)
Q Consensus 239 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 317 (331)
|++++|.+.. ++...+... +++++++.+++..+.+| .++.++++|+.|++++|.++ .+|.. .+.+|+.|.+.++
T Consensus 159 L~L~~N~i~~-i~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 159 LWLNKNGIQE-IHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARST 233 (350)
T ss_dssp EECCSSCCCE-ECTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTC
T ss_pred hccccccccC-CChhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccC
Confidence 9999999984 554444444 89999998654444555 57899999999999999999 56542 2456666766665
Q ss_pred eeeecCCc
Q 036258 318 NLQGSIPS 325 (331)
Q Consensus 318 ~~~~~~p~ 325 (331)
.-...+|+
T Consensus 234 ~~l~~lP~ 241 (350)
T 4ay9_X 234 YNLKKLPT 241 (350)
T ss_dssp TTCCCCCC
T ss_pred CCcCcCCC
Confidence 54447774
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1.3e-18 Score=148.09 Aligned_cols=174 Identities=29% Similarity=0.423 Sum_probs=144.4
Q ss_pred hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccc
Q 036258 50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK 129 (331)
Q Consensus 50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 129 (331)
.+..+++|+.|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.++. + ..+..+++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~ 113 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKK 113 (291)
T ss_dssp CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTT
T ss_pred chhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCC
Confidence 3667889999999999998 6654 4779999999999999985443 8899999999999999974 3 34889999
Q ss_pred ccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEE
Q 036258 130 LRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLD 209 (331)
Q Consensus 130 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 209 (331)
|++|++++|....+ .. +..+++|++|++++|.+..+ ..+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 114 L~~L~L~~n~i~~~-----~~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~ 184 (291)
T 1h6t_A 114 LKSLSLEHNGISDI-----NG-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 184 (291)
T ss_dssp CCEEECTTSCCCCC-----GG-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred CCEEECCCCcCCCC-----hh-hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEE
Confidence 99999987776653 22 33789999999999999877 578889999999999999986644 88899999999
Q ss_pred ccCCcccCccCCCccccccccccCCCCcEEEeecccccc
Q 036258 210 LGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSG 248 (331)
Q Consensus 210 l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 248 (331)
+++|.+..+ + .+..+++|+.|++++|.+..
T Consensus 185 L~~N~i~~l--------~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 185 LSKNHISDL--------R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCSSCCCBC--------G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCCcCCCC--------h-hhccCCCCCEEECcCCcccC
Confidence 999988753 2 37888999999999999874
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1.6e-18 Score=142.25 Aligned_cols=157 Identities=25% Similarity=0.353 Sum_probs=116.3
Q ss_pred CCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCC
Q 036258 157 NLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYL 236 (331)
Q Consensus 157 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L 236 (331)
..+.++.+++++..+|..+. ++|+.|++++|.+.+..+..|..+++|++|++++|.+..++. ..+..+++|
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~-------~~~~~l~~L 90 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV-------GVFDSLTQL 90 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTC
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh-------hhcccCCCc
Confidence 35667777777777776553 678888888888877777777788888888888888765432 336777888
Q ss_pred cEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccC
Q 036258 237 KVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFG 316 (331)
Q Consensus 237 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 316 (331)
++|++++|.+.+..+..+..++ +|+.|++++|.+. .+|..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLV-HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccChhHhCcch-hhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 8888888888755555555555 8888888888887 6777778888888888888888854445677788888888888
Q ss_pred CeeeecCC
Q 036258 317 NNLQGSIP 324 (331)
Q Consensus 317 n~~~~~~p 324 (331)
|+++...+
T Consensus 169 N~~~c~c~ 176 (229)
T 3e6j_A 169 NPWDCECR 176 (229)
T ss_dssp SCBCTTBG
T ss_pred CCccCCcc
Confidence 88775543
No 101
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=2.2e-21 Score=181.54 Aligned_cols=167 Identities=16% Similarity=0.167 Sum_probs=110.8
Q ss_pred CCCCCcEEEcCC-----------CCCC--CCcccccCCCCCceeeCcCccccccCchhccC-CCCCCEEEcc----CCcc
Q 036258 154 SLPNLKWLALGM-----------NKLR--TIPNSITNASELTLLELGKNSFSGLVPNTFGN-LRFLSLLDLG----NNYL 215 (331)
Q Consensus 154 ~l~~L~~L~l~~-----------~~l~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~~L~~L~l~----~~~l 215 (331)
.+++|++|++.+ +.++ .++.....+++|++|+++.+.+.+.....+.. +++|++|+++ .+.+
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 456666666662 3333 12222344677777777666665544444443 6778888886 3344
Q ss_pred cCccCCCccccccccccCCCCcEEEeeccc--ccccCCchhhhccccccEEEeccCcccc-cCCccccCCCCCCEEEccC
Q 036258 216 TTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ--LSGILPPLIGNFSDSLQQFYAYDCELKG-SIPQEIGNLNGLIDLRLQD 292 (331)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~ 292 (331)
+..+.+. .+...+..+++|++|+++.+. +++..+..+....++|++|++++|.+++ .++..+.++++|+.|++++
T Consensus 420 ~~~p~~~--~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 420 TDLPLDN--GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp SSCCCHH--HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred cCchHHH--HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence 4321110 133345678899999997533 6656666666655689999999999886 3455668899999999999
Q ss_pred CCCccc-CCcCccCCCCCCeEeccCCeeeec
Q 036258 293 NDLNGT-IPTTVGRLQQLQGLFLFGNNLQGS 322 (331)
Q Consensus 293 n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~ 322 (331)
|.+++. ++..+..+++|++|++++|++++.
T Consensus 498 n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 998753 333445789999999999999865
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2.5e-18 Score=141.10 Aligned_cols=154 Identities=25% Similarity=0.278 Sum_probs=120.0
Q ss_pred CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258 56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL 135 (331)
Q Consensus 56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 135 (331)
..+.++.+++.+. .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 3678999999998 899766 589999999999999888888999999999999999998555566778888888888
Q ss_pred CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcc
Q 036258 136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL 215 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l 215 (331)
++|.+. .++...+..+++|++|++++|.+..+|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus 96 s~N~l~----~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 96 GTNQLT----VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CSSCCC----CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCCcCC----ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 666554 3344444467788888888887777777777777777777777777766556667777777777777766
Q ss_pred cC
Q 036258 216 TT 217 (331)
Q Consensus 216 ~~ 217 (331)
..
T Consensus 172 ~c 173 (229)
T 3e6j_A 172 DC 173 (229)
T ss_dssp CT
T ss_pred cC
Confidence 54
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.6e-18 Score=147.46 Aligned_cols=186 Identities=23% Similarity=0.374 Sum_probs=121.6
Q ss_pred EEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcC
Q 036258 85 LVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALG 164 (331)
Q Consensus 85 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 164 (331)
+.+..+.+.... .+..+++|++|++++|.+.. + ..+..+++|++|++++|....+. . +..+++|++|+++
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~~~~l~~L~~L~L~~n~l~~~~----~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVTKLFLNGNKLTDIK----P--LANLKNLGWLFLD 98 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG----G--GTTCTTCCEEECC
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCccc-C-hhHhcCCCCCEEEccCCccCCCc----c--cccCCCCCEEECC
Confidence 344444443322 24567888888888888763 3 34667778888888666554432 1 3367777778877
Q ss_pred CCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecc
Q 036258 165 MNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSN 244 (331)
Q Consensus 165 ~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 244 (331)
+|.+..++. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+..+ ..+..+++|++|++++|
T Consensus 99 ~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 99 ENKVKDLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---------TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp SSCCCCGGG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC---------GGGGGCTTCSEEECCSS
T ss_pred CCcCCCChh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc---------hhhccCCCCCEEEccCC
Confidence 777776543 67777777777777777653 3466677777777777777642 23666777777777777
Q ss_pred cccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcc
Q 036258 245 QLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNG 297 (331)
Q Consensus 245 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 297 (331)
.+.+..+ +..++ +|+.|++++|.+.+ ++ .+..+++|+.|++++|++..
T Consensus 167 ~l~~~~~--l~~l~-~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 167 QISDIVP--LAGLT-KLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCCCGG--GTTCT-TCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccccchh--hcCCC-ccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 7764433 44444 77777777777763 33 36677777777777777663
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=6.5e-19 Score=141.22 Aligned_cols=154 Identities=15% Similarity=0.222 Sum_probs=127.1
Q ss_pred CCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccC
Q 036258 154 SLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC 233 (331)
Q Consensus 154 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~ 233 (331)
.+++|++|++++|.+..++ .+..+++|++|++++|.+... ..+..+++|++|++++|.+.. ..+..+..+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~-------~~~~~l~~l 111 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTS-------DKIPNLSGL 111 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBG-------GGSCCCTTC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCc-------ccChhhcCC
Confidence 5678999999999988777 688889999999999976533 467889999999999998876 345568889
Q ss_pred CCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEe
Q 036258 234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLF 313 (331)
Q Consensus 234 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 313 (331)
++|++|++++|.+.+..+..+..++ +|++|++++|...+.++ .+..+++|+.|++++|.++ .++ .+..+++|+.|+
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~-~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLP-KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLY 187 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCS-SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCC-CCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEE
Confidence 9999999999999877788888776 99999999998333566 6899999999999999998 454 788999999999
Q ss_pred ccCCeeee
Q 036258 314 LFGNNLQG 321 (331)
Q Consensus 314 l~~n~~~~ 321 (331)
+++|++.+
T Consensus 188 l~~N~i~~ 195 (197)
T 4ezg_A 188 AFSQTIGG 195 (197)
T ss_dssp ECBC----
T ss_pred eeCcccCC
Confidence 99999874
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=2.3e-18 Score=140.38 Aligned_cols=152 Identities=24% Similarity=0.363 Sum_probs=108.8
Q ss_pred ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccC
Q 036258 57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG 136 (331)
Q Consensus 57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 136 (331)
-+.++++++.++ .+|..+ .++++.|++++|.+.+..+..|..+++|++|++++|.++...|..|.++++|++|+++
T Consensus 13 ~~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 13 NNIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TTEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CCEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 368999999998 888766 4789999999999987777789999999999999999987778888888888888776
Q ss_pred ccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcc
Q 036258 137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL 215 (331)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l 215 (331)
+|.+. .++...+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 89 ~N~l~----~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 89 GNKIT----ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCcCC----ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 65554 33444444566666666666666644 34555566666666666666555555555555666666665554
Q ss_pred c
Q 036258 216 T 216 (331)
Q Consensus 216 ~ 216 (331)
.
T Consensus 165 ~ 165 (220)
T 2v9t_B 165 I 165 (220)
T ss_dssp E
T ss_pred C
Confidence 4
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2.1e-18 Score=160.40 Aligned_cols=176 Identities=29% Similarity=0.412 Sum_probs=143.5
Q ss_pred hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258 51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL 130 (331)
Q Consensus 51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 130 (331)
+..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.+..+ +..+++|++|+|++|.+.. + ..+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCC
Confidence 667889999999999997 6763 4789999999999999885544 8899999999999999874 3 368889999
Q ss_pred cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEc
Q 036258 131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDL 210 (331)
Q Consensus 131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 210 (331)
+.|++++|.+..+ .. +..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|
T Consensus 112 ~~L~Ls~N~l~~l-----~~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 112 KSLSLEHNGISDI-----NG-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp CEEECTTSCCCCC-----GG-GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CEEEecCCCCCCC-----cc-ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 9999977776543 22 33788999999999998877 578888999999999999886655 788899999999
Q ss_pred cCCcccCccCCCccccccccccCCCCcEEEeecccccccCC
Q 036258 211 GNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILP 251 (331)
Q Consensus 211 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 251 (331)
++|.+..+ ..+..+++|+.|+|++|.+.+...
T Consensus 183 s~N~i~~l---------~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 183 SKNHISDL---------RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CSSCCCBC---------GGGTTCTTCSEEECCSEEEECCCC
T ss_pred cCCCCCCC---------hHHccCCCCCEEEccCCcCcCCcc
Confidence 99988753 237788899999999998875433
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1e-18 Score=162.52 Aligned_cols=192 Identities=22% Similarity=0.328 Sum_probs=140.2
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 134 (331)
..+..+.+..+.+.+.++. ..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+..+ +..+++|+.|+
T Consensus 21 ~~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 3455667777777633332 458899999999998874 34 58899999999999999885443 77888888888
Q ss_pred cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214 (331)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 214 (331)
+++|....+. . +..+++|++|++++|.+..++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.
T Consensus 94 Ls~N~l~~l~-----~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 94 LDENKIKDLS-----S-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp CCSSCCCCCT-----T-STTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSC
T ss_pred CcCCCCCCCh-----h-hccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCc
Confidence 8776665432 2 237788888888888887664 477788888888888888755 567778888888888887
Q ss_pred ccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCccccc
Q 036258 215 LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS 274 (331)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 274 (331)
+... +. +..+++|+.|+|++|.+.+. ..+..++ +|+.|+|++|.+.+.
T Consensus 165 l~~~--------~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~-~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 165 ISDI--------VP-LAGLTKLQNLYLSKNHISDL--RALAGLK-NLDVLELFSQECLNK 212 (605)
T ss_dssp CCCC--------GG-GTTCTTCCEEECCSSCCCBC--GGGTTCT-TCSEEECCSEEEECC
T ss_pred CCCc--------hh-hccCCCCCEEECcCCCCCCC--hHHccCC-CCCEEEccCCcCcCC
Confidence 7752 22 67778888888888887643 3455555 788888888877643
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=7e-18 Score=137.52 Aligned_cols=152 Identities=23% Similarity=0.279 Sum_probs=93.3
Q ss_pred ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCC-ccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258 57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIP-LSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL 135 (331)
Q Consensus 57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 135 (331)
-+.++++++.++ .+|..+ .+.+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 358999999988 788755 4567899999999886644 45788999999999999888665556666666666666
Q ss_pred CccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258 136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 214 (331)
++|... .++...+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.
T Consensus 89 s~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 89 TSNRLE----NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CSSCCC----CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCccC----ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 544443 22233333455555555555555433 2444444455555555554444444444444444444444444
Q ss_pred cc
Q 036258 215 LT 216 (331)
Q Consensus 215 l~ 216 (331)
+.
T Consensus 165 l~ 166 (220)
T 2v70_A 165 FN 166 (220)
T ss_dssp EE
T ss_pred Cc
Confidence 43
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=3.5e-18 Score=149.97 Aligned_cols=176 Identities=26% Similarity=0.260 Sum_probs=135.3
Q ss_pred ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCc-CCCCCCEEEccCccccccCCccccCccccccccc
Q 036258 57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLS-KCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL 135 (331)
Q Consensus 57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 135 (331)
-+.++++++.++ .+|..+ .+.++.|+|++|.+.+..+..|. .+++|++|++++|.++...+..|..+++|++|++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 368899999888 788765 45689999999999877777777 8999999999999998777778888999999999
Q ss_pred CccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCccccccCchhc---cCCCCCCEEEcc
Q 036258 136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTF---GNLRFLSLLDLG 211 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l---~~~~~L~~L~l~ 211 (331)
++|.... ++...+..+++|++|++++|.+..+ +..|..+++|++|++++|.+....+..+ ..+++|++|+++
T Consensus 96 s~N~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 96 SSNHLHT----LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp CSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CCCcCCc----CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 7766553 3444455788899999988888855 4678888888999998888886655555 567888888888
Q ss_pred CCcccCccCCCccccccccccCCC--CcEEEeeccccc
Q 036258 212 NNYLTTRSSTTEWSFLSSLTNCIY--LKVLGLHSNQLS 247 (331)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~~~~~~--L~~L~l~~n~~~ 247 (331)
+|.+..++ +..+..++. ++.|++.+|.+.
T Consensus 172 ~N~l~~l~-------~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 172 SNKLKKLP-------LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SSCCCCCC-------HHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCccC-------HHHhhhccHhhcceEEecCCCcc
Confidence 88887643 223555655 477888888765
No 110
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=6.4e-20 Score=171.60 Aligned_cols=263 Identities=13% Similarity=0.085 Sum_probs=145.6
Q ss_pred cCCCCccEEEcCCCcCccCC---ChhhhcCCCCCcEEEccCCccc----ccCCccCcCCCCCCEEEccCccccccCCccc
Q 036258 52 YNISSLKMIRLSSNSLSGSL---PNDLCNRLPSLEQLVLRSNGFF----GQIPLSLSKCTQLQHLWLEHNKFTGRLPENI 124 (331)
Q Consensus 52 ~~~~~L~~L~l~~~~i~~~~---~~~~~~~~~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 124 (331)
.++++|++|++++|.+.+.- ...++..+++|++|++++|.+. ..++..+..+++|++|++++|.+.+ ++..+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~ 239 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF 239 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH
Confidence 36678888888888765331 1123356778888888877765 2333334567888888888877663 55666
Q ss_pred cCcccccccccCccccccccccCCc----------------------chhcCCCCCcEEEcCCCCCC--CCcccccCCCC
Q 036258 125 GNLSKLRSLVLGHKAHNSLHGHLPS----------------------TLSVSLPNLKWLALGMNKLR--TIPNSITNASE 180 (331)
Q Consensus 125 ~~l~~L~~L~l~~~~~~~~~~~~~~----------------------~~~~~l~~L~~L~l~~~~l~--~~~~~~~~l~~ 180 (331)
..+++|++|+++............. ..+..+++|++|++++|.+. .+...+..+++
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 6677777777653111100001111 11223445555555554433 11122344455
Q ss_pred CceeeCcCccccccCchhccCCCCCCEEEccC-----------CcccCccCCCccccccccccCCCCcEEEeeccccccc
Q 036258 181 LTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN-----------NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGI 249 (331)
Q Consensus 181 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~-----------~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 249 (331)
|++|+++++......+.....+++|++|++++ +.++.. .+......+++|++|++..+.+++.
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~------~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR------GLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH------HHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH------HHHHHHhhCccCeEEEeecCCccHH
Confidence 55555542211111222233455566666662 223221 1222234577788888877777766
Q ss_pred CCchhhhccccccEEEec----cCccccc-----CCccccCCCCCCEEEccCCC--CcccCCcCcc-CCCCCCeEeccCC
Q 036258 250 LPPLIGNFSDSLQQFYAY----DCELKGS-----IPQEIGNLNGLIDLRLQDND--LNGTIPTTVG-RLQQLQGLFLFGN 317 (331)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~----~~~~~~~-----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~l~-~l~~L~~L~l~~n 317 (331)
.+..+....++|+.|+++ .+.+++. ++..+.++++|+.|+++.|. +++..+..+. .+++|++|++++|
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 666666534478888886 4455532 23335668888888886543 5543333333 4788999999999
Q ss_pred eeee
Q 036258 318 NLQG 321 (331)
Q Consensus 318 ~~~~ 321 (331)
.+++
T Consensus 474 ~l~~ 477 (592)
T 3ogk_B 474 GESD 477 (592)
T ss_dssp CSSH
T ss_pred CCCH
Confidence 8875
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=3.9e-18 Score=147.79 Aligned_cols=248 Identities=14% Similarity=0.127 Sum_probs=156.8
Q ss_pred CCCccEEEcCCCcCcc-------------------CCChhhhcC--------CCCCcEEEccCCcccccCCccCcCCCCC
Q 036258 54 ISSLKMIRLSSNSLSG-------------------SLPNDLCNR--------LPSLEQLVLRSNGFFGQIPLSLSKCTQL 106 (331)
Q Consensus 54 ~~~L~~L~l~~~~i~~-------------------~~~~~~~~~--------~~~L~~L~L~~n~i~~~~~~~~~~l~~L 106 (331)
+++|++|||++|.+.. .+|+..|.+ +++|+.+++.+ .+..+.+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 6889999999998761 355566666 77777777777 5665666667777777
Q ss_pred CEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCc-EEEcCCCCCCCCcccc----cCCCCC
Q 036258 107 QHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLK-WLALGMNKLRTIPNSI----TNASEL 181 (331)
Q Consensus 107 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~l~~~~~~~----~~l~~L 181 (331)
+.+++.+|.+....+.+|.++.++..+.............+....|..+..|+ .+.+.... .++..+ ....++
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG--KLEDEIMKAGLQPRDI 204 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC--CHHHHHHHTTCCGGGC
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC--cHHHHHhhcccCcccc
Confidence 77777777666555566666666665555321111111122333344455555 33333221 122111 123444
Q ss_pred ceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccc
Q 036258 182 TLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSL 261 (331)
Q Consensus 182 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 261 (331)
..+.+.++-...........+++|+.++++.|.++.++.. .|.++++|+++++.+| +....+.+|.... +|
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~-------aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~-~L 275 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF-------TFAQKKYLLKIKLPHN-LKTIGQRVFSNCG-RL 275 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT-------TTTTCTTCCEEECCTT-CCEECTTTTTTCT-TC
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh-------hhhCCCCCCEEECCcc-cceehHHHhhCCh-hc
Confidence 5555544322111111112367899999998888876544 3888888999999887 6644455555554 78
Q ss_pred c-EEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEec
Q 036258 262 Q-QFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFL 314 (331)
Q Consensus 262 ~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 314 (331)
+ .+++.+ .++...+.+|.+|++|+.+++.+|.+....+.+|.++++|+.++.
T Consensus 276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8 888887 666666788999999999999999998666678999999998864
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1e-17 Score=134.14 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=94.2
Q ss_pred hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258 51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL 130 (331)
Q Consensus 51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 130 (331)
...+++|++|++++|.+. .+| .+ ..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GI-EYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TG-GGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HH-hcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 366788999999999988 777 44 77899999999999765 23467888999999999998886667777777777
Q ss_pred cccccCccccccccccCCcchhcCCCCCcEEEcCCCC-CCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEE
Q 036258 131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNK-LRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLD 209 (331)
Q Consensus 131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 209 (331)
++|++++|.... ..+.. +..+++|++|++++|. +..++ .+..+++|++|++++|.+.+. + .+..+++|++|+
T Consensus 115 ~~L~Ls~n~i~~---~~~~~-l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 115 TLLDISHSAHDD---SILTK-INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLY 187 (197)
T ss_dssp CEEECCSSBCBG---GGHHH-HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEE
T ss_pred CEEEecCCccCc---HhHHH-HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEE
Confidence 777775444332 11121 2245555555555554 44443 344445555555555544432 1 334444444444
Q ss_pred ccCCcc
Q 036258 210 LGNNYL 215 (331)
Q Consensus 210 l~~~~l 215 (331)
+++|.+
T Consensus 188 l~~N~i 193 (197)
T 4ezg_A 188 AFSQTI 193 (197)
T ss_dssp ECBC--
T ss_pred eeCccc
Confidence 444443
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1.8e-17 Score=138.86 Aligned_cols=168 Identities=22% Similarity=0.243 Sum_probs=78.1
Q ss_pred CCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCc
Q 036258 103 CTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELT 182 (331)
Q Consensus 103 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~ 182 (331)
+.++..++++++.++. ++ .+..+++|++|+++++....+ + . +..+++|++|++++|.+..++. +..+++|+
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~l----~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~ 88 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQSL----A-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCCC----T-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCC
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcccc----h-H-HhhCCCCCEEECCCCccCCChh-hccCCCCC
Confidence 3444555555555542 22 344555555555544433322 1 1 1244555555555555554443 45555555
Q ss_pred eeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhcccccc
Q 036258 183 LLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQ 262 (331)
Q Consensus 183 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 262 (331)
+|++++|.+.+..+ +.. ++|++|++++|.+..+ ..+..+++|++|++++|.+.+. + .+..+. +|+
T Consensus 89 ~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~---------~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~-~L~ 153 (263)
T 1xeu_A 89 ELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT---------DSLIHLKNLEILSIRNNKLKSI-V-MLGFLS-KLE 153 (263)
T ss_dssp EEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS---------GGGTTCTTCCEEECTTSCCCBC-G-GGGGCT-TCC
T ss_pred EEECCCCccCCcCc--ccc-CcccEEEccCCccCCC---------hhhcCcccccEEECCCCcCCCC-h-HHccCC-CCC
Confidence 55555555543211 111 4555555555555432 1244455555555555555432 1 233333 555
Q ss_pred EEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258 263 QFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN 296 (331)
Q Consensus 263 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 296 (331)
.|++++|.+.+. ..+..+++|+.|++++|++.
T Consensus 154 ~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 154 VLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp EEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred EEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 555555555432 34444555555555555544
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=1.7e-20 Score=173.37 Aligned_cols=204 Identities=21% Similarity=0.207 Sum_probs=118.8
Q ss_pred cCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCcc-------------ccccCCccccCcccccccc-cCcccccc
Q 036258 77 NRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNK-------------FTGRLPENIGNLSKLRSLV-LGHKAHNS 142 (331)
Q Consensus 77 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 142 (331)
..+++|+.|+|++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|...
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45788888888888886 678888888888888887664 3445666777788888887 5433221
Q ss_pred ccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCC
Q 036258 143 LHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT 222 (331)
Q Consensus 143 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 222 (331)
+|..+.+.+|.+..++. ..|+.|++++|.+.+. |. +..+++|++|++++|.++.
T Consensus 424 --------------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~----- 477 (567)
T 1dce_A 424 --------------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRA----- 477 (567)
T ss_dssp --------------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCC-----
T ss_pred --------------hhhhhhhhcccccccCc-----cCceEEEecCCCCCCC-cC-ccccccCcEeecCcccccc-----
Confidence 12222222222222111 1245555555555432 33 5555555555555555552
Q ss_pred ccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccC-CccccCCCCCCEEEccCCCCcccCCc
Q 036258 223 EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSI-PQEIGNLNGLIDLRLQDNDLNGTIPT 301 (331)
Q Consensus 223 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~ 301 (331)
+|..+..+++|++|++++|.+++ +| .+..++ +|+.|++++|.+++.. |..+..+++|+.|++++|++++..+.
T Consensus 478 ---lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~-~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 478 ---LPPALAALRCLEVLQASDNALEN-VD-GVANLP-RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp ---CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS-SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred ---cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC-CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 23345555556666666666553 33 444444 6666666666666544 67777777777777777777743322
Q ss_pred C---ccCCCCCCeEec
Q 036258 302 T---VGRLQQLQGLFL 314 (331)
Q Consensus 302 ~---l~~l~~L~~L~l 314 (331)
. +..+|+|+.|++
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 1 223677777653
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=6.9e-17 Score=141.69 Aligned_cols=176 Identities=23% Similarity=0.257 Sum_probs=138.6
Q ss_pred cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-cccc-CCCCCceeeCcCccccccCchhccCCCCCCEE
Q 036258 131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSIT-NASELTLLELGKNSFSGLVPNTFGNLRFLSLL 208 (331)
Q Consensus 131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 208 (331)
+.++++++.... +|..+ .+.+++|++++|.++.++ ..+. .+++|+.|++++|.+....+..|..+++|++|
T Consensus 21 ~~l~c~~~~l~~----iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSKQQLPN----VPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCSSCCSS----CCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEEEeCCCCcCc----cCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 467776555543 34432 246899999999998765 4455 88999999999999998888889999999999
Q ss_pred EccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccc---cCCCCC
Q 036258 209 DLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI---GNLNGL 285 (331)
Q Consensus 209 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L 285 (331)
++++|.+..++ +..+..+++|++|+|++|.+.+..+..+..+. +|+.|+|++|.+....+..+ ..+++|
T Consensus 94 ~Ls~N~l~~~~-------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 94 DLSSNHLHTLD-------EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-QLQKLYLSQNQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp ECCSSCCCEEC-------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred ECCCCcCCcCC-------HHHhCCCcCCCEEECCCCcccEECHHHhCCcc-cCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence 99999988643 33478899999999999999977788888777 99999999999985333344 568999
Q ss_pred CEEEccCCCCcccCCcCccCCCC--CCeEeccCCeeee
Q 036258 286 IDLRLQDNDLNGTIPTTVGRLQQ--LQGLFLFGNNLQG 321 (331)
Q Consensus 286 ~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~~~~ 321 (331)
+.|++++|.+++..+..+..++. ++.|++++|++.-
T Consensus 166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 99999999999444456677776 4889999999873
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=8.9e-18 Score=140.69 Aligned_cols=167 Identities=23% Similarity=0.336 Sum_probs=92.4
Q ss_pred ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccC
Q 036258 57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG 136 (331)
Q Consensus 57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 136 (331)
++.++++++.++ .++ . +..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 21 l~~l~l~~~~i~-~~~-~-~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVT-DLV-S-QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTT-SEE-C-HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCCCcc-ccc-c-hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 334444444444 332 1 133455555555555443 222 34445555555555555442222 4445555555554
Q ss_pred ccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCccc
Q 036258 137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLT 216 (331)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 216 (331)
+|....+.. .. . ++|++|++++|.++.++ .+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+.
T Consensus 94 ~N~l~~l~~-----~~-~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 94 RNRLKNLNG-----IP-S-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp SSCCSCCTT-----CC-C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred CCccCCcCc-----cc-c-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 444332211 11 1 56777777777776654 466777777777777777654 2 4667777777777777776
Q ss_pred CccCCCccccccccccCCCCcEEEeeccccccc
Q 036258 217 TRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGI 249 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 249 (331)
.. ..+..+++|+.|++++|.+...
T Consensus 164 ~~---------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT---------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC---------TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch---------HHhccCCCCCEEeCCCCcccCC
Confidence 53 3366777788888887777644
No 117
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.71 E-value=8.6e-16 Score=136.10 Aligned_cols=262 Identities=13% Similarity=0.141 Sum_probs=195.8
Q ss_pred ccCCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccc
Q 036258 39 IADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTG 118 (331)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 118 (331)
+++....++..+|.++ +|+.+.+..+ ++ .++...|..+ +|+.+.+.. .+..+.+.+|.++++|+.+++.+|.++.
T Consensus 120 ip~~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~ 194 (401)
T 4fdw_A 120 LPNSVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK 194 (401)
T ss_dssp CCTTCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE
T ss_pred ECCccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE
Confidence 3456677777889985 7999999766 66 7888888875 799999986 5666777889999999999999998885
Q ss_pred cCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCch
Q 036258 119 RLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPN 197 (331)
Q Consensus 119 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~ 197 (331)
....+|. ..+|+.+.+..+ ...+...+|..+++|+.+.+..+ +..++ .+|.. .+|+.+.+. +.+..+...
T Consensus 195 I~~~aF~-~~~L~~l~lp~~-----l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~ 265 (401)
T 4fdw_A 195 LPASTFV-YAGIEEVLLPVT-----LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASR 265 (401)
T ss_dssp ECTTTTT-TCCCSEEECCTT-----CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTT
T ss_pred echhhEe-ecccCEEEeCCc-----hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChh
Confidence 5455555 688999988532 23566777888999999999864 55554 55655 789999984 446667778
Q ss_pred hccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCc
Q 036258 198 TFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQ 277 (331)
Q Consensus 198 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 277 (331)
+|.++++|+.+.+.++.+...... .-....|.++++|+.+.+.+ .+......+|.... +|+.+.+..+ ++.....
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~--~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~-~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEA--MIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNR-KVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTC--EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCC-SCCEEEECTT-CCEECTT
T ss_pred HhhCCCCCCEEEeCCccccCCccc--EECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCC-CccEEEECcc-ccEEcHH
Confidence 999999999999988766511000 01234588999999999984 46644455555544 9999999654 6656678
Q ss_pred cccCCCCCCEEEccCCCCcccCCcCccCCC-CCCeEeccCCeee
Q 036258 278 EIGNLNGLIDLRLQDNDLNGTIPTTVGRLQ-QLQGLFLFGNNLQ 320 (331)
Q Consensus 278 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~ 320 (331)
+|.++ +|+.+.+.+|.+.......|..++ .++.+++-.+.+.
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 89999 999999999988755566777775 6888888776543
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=2.2e-20 Score=172.69 Aligned_cols=196 Identities=22% Similarity=0.211 Sum_probs=144.2
Q ss_pred cCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCC
Q 036258 101 SKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASE 180 (331)
Q Consensus 101 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~ 180 (331)
...++|+.|++++|.++ .+|..+.++++|+.|+++++..- ..++.. +..+ +.....|..+..+++
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l---~~l~~l-------l~~~----~~~~~~~~~l~~l~~ 410 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCL---LTIILL-------MRAL----DPLLYEKETLQYFST 410 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHH---HHHHHH-------HHHH----CTGGGHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhh---hhHHHH-------HHhc----ccccCCHHHHHHHHh
Confidence 56899999999999998 78999999999999998554310 000000 0000 011133455555556
Q ss_pred Cceee-CcCccccccCc-----hhccC--CCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCc
Q 036258 181 LTLLE-LGKNSFSGLVP-----NTFGN--LRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPP 252 (331)
Q Consensus 181 L~~L~-l~~n~~~~~~~-----~~l~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 252 (331)
|+.|+ ++.|.+..... ..+.. ...|+.|++++|.++.+ +. +..+++|+.|++++|.+. .+|.
T Consensus 411 L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l--------p~-~~~l~~L~~L~Ls~N~l~-~lp~ 480 (567)
T 1dce_A 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--------CH-LEQLLLVTHLDLSHNRLR-ALPP 480 (567)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC--------CC-GGGGTTCCEEECCSSCCC-CCCG
T ss_pred cccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC--------cC-ccccccCcEeecCccccc-ccch
Confidence 66655 34333221100 00111 12599999999999863 44 889999999999999998 8888
Q ss_pred hhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccC-CcCccCCCCCCeEeccCCeeeecCC
Q 036258 253 LIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTI-PTTVGRLQQLQGLFLFGNNLQGSIP 324 (331)
Q Consensus 253 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p 324 (331)
.+..+. +|+.|+|++|.+++ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|++++..|
T Consensus 481 ~~~~l~-~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 481 ALAALR-CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GGGGCT-TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred hhhcCC-CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 888887 99999999999995 77 8999999999999999999665 8999999999999999999995443
No 119
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=2.6e-19 Score=167.46 Aligned_cols=135 Identities=21% Similarity=0.232 Sum_probs=76.4
Q ss_pred hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCC-ccccc-CCccCcCCCCCCEEEccCccccccCCccc----
Q 036258 51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSN-GFFGQ-IPLSLSKCTQLQHLWLEHNKFTGRLPENI---- 124 (331)
Q Consensus 51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---- 124 (331)
+..+++|++|+++++.+++..+..+...+++|++|++++| .+... ++..+..+++|++|++++|.+++..+..+
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 3456778888888877765444444335778888888877 33321 23333467788888888877664333333
Q ss_pred cCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCC-CCCCCcccccCCCCCceeeC
Q 036258 125 GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN-KLRTIPNSITNASELTLLEL 186 (331)
Q Consensus 125 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~l~~L~~L~l 186 (331)
..+++|++|+++++. ..+.......+...+++|++|++.+| .+..++..+..+++|++|++
T Consensus 181 ~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp TTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred hcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 355678888876554 12221212222234677777777766 22233333444444444443
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=1e-17 Score=159.53 Aligned_cols=215 Identities=22% Similarity=0.185 Sum_probs=84.7
Q ss_pred CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccc---------cCCccCcCCCCCCEEEccCccccccCCcccc
Q 036258 55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFG---------QIPLSLSKCTQLQHLWLEHNKFTGRLPENIG 125 (331)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~---------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 125 (331)
++++.|++.++.+. .++... ++.++|+.+.+.+ ..+..+..++.|+.|+|++|.+. .+|..+.
T Consensus 173 ~~~~~l~L~~n~~~-~~~~~~------l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQAL------LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF 244 (727)
T ss_dssp --------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG
T ss_pred CccceEEeeCCCCC-cchhhH------hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhc
Confidence 45777778777766 444333 2333333333221 33444555555555555555554 3333333
Q ss_pred CcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCC
Q 036258 126 NLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFL 205 (331)
Q Consensus 126 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 205 (331)
.+++|++|+|++|.++.+|..+..+++|+.|++++|.+. .+|..+..+++|
T Consensus 245 ----------------------------~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 245 ----------------------------KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp ----------------------------GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred ----------------------------CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 445555555556666666666666666666666666666 445566666667
Q ss_pred CEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCC
Q 036258 206 SLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGL 285 (331)
Q Consensus 206 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 285 (331)
++|+|++|.+.. ++..+..+++|++|+|++|.+.+.+|..+.........+++.+|.+.+.+|..+
T Consensus 296 ~~L~L~~N~l~~--------lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------ 361 (727)
T 4b8c_D 296 KYFYFFDNMVTT--------LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------ 361 (727)
T ss_dssp SEEECCSSCCCC--------CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------
T ss_pred CEEECCCCCCCc--------cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc------
Confidence 777777766653 344466677777777777777666666655443233345667777766665543
Q ss_pred CEEEccCC--------CCcccCCcCccCCCCCCeEeccCCeee
Q 036258 286 IDLRLQDN--------DLNGTIPTTVGRLQQLQGLFLFGNNLQ 320 (331)
Q Consensus 286 ~~L~l~~n--------~l~~~~~~~l~~l~~L~~L~l~~n~~~ 320 (331)
..|+++.| .+.+..+..+..++.+....+++|-+.
T Consensus 362 ~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 362 RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ----------------------------------------CCC
T ss_pred ceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 34444444 222222223334444555555555554
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=3.3e-19 Score=166.77 Aligned_cols=167 Identities=14% Similarity=0.179 Sum_probs=112.1
Q ss_pred CcchhcCCCCccEEEcCCCcCccCC---C-----------hhhhcCCCCCcEEEccCCcccccCCccCc-CCCCCCEEEc
Q 036258 47 TKNCFYNISSLKMIRLSSNSLSGSL---P-----------NDLCNRLPSLEQLVLRSNGFFGQIPLSLS-KCTQLQHLWL 111 (331)
Q Consensus 47 ~~~~~~~~~~L~~L~l~~~~i~~~~---~-----------~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l 111 (331)
+...+.++++|++|+++++.....+ | ..++..+++|++|++++|.+.+..+..+. .+++|++|++
T Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L 137 (594)
T 2p1m_B 58 PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC
Confidence 3345778899999999997532121 1 23345789999999999988765555554 6899999999
Q ss_pred cCc-ccccc-CCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCC--CC--CCcccccCCCCCceee
Q 036258 112 EHN-KFTGR-LPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNK--LR--TIPNSITNASELTLLE 185 (331)
Q Consensus 112 ~~n-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--l~--~~~~~~~~l~~L~~L~ 185 (331)
++| .++.. ++.....+++|++|+++++............+...+++|++|+++++. +. .++..+..+++|++|+
T Consensus 138 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~ 217 (594)
T 2p1m_B 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK 217 (594)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEe
Confidence 998 55422 334445789999999987665443322233334478899999999887 22 1223345579999999
Q ss_pred CcCccccccCchhccCCCCCCEEEccCC
Q 036258 186 LGKNSFSGLVPNTFGNLRFLSLLDLGNN 213 (331)
Q Consensus 186 l~~n~~~~~~~~~l~~~~~L~~L~l~~~ 213 (331)
+++|......+..+..+++|++|+++.+
T Consensus 218 L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 218 LNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred cCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 9998322224455555666666665443
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=2.1e-16 Score=123.18 Aligned_cols=138 Identities=22% Similarity=0.182 Sum_probs=103.6
Q ss_pred CCCceeeCcCcccc-ccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhc
Q 036258 179 SELTLLELGKNSFS-GLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNF 257 (331)
Q Consensus 179 ~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 257 (331)
++|++|++++|.+. +..|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.+.+|..+..+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---------SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---------SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---------hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 56677777777665 34555566777777788877777653 346778888888888888876666666656
Q ss_pred cccccEEEeccCccccc-CCccccCCCCCCEEEccCCCCcccCC---cCccCCCCCCeEeccCCeeeecCCccc
Q 036258 258 SDSLQQFYAYDCELKGS-IPQEIGNLNGLIDLRLQDNDLNGTIP---TTVGRLQQLQGLFLFGNNLQGSIPSDL 327 (331)
Q Consensus 258 ~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~~~~~~p~~~ 327 (331)
+ +|++|++++|.+++. .+..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+. .+|+.-
T Consensus 95 ~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 95 P-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp T-TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred C-CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccccc
Confidence 5 888888888888743 22678889999999999999984433 37888999999999999988 777654
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=7.9e-16 Score=122.60 Aligned_cols=131 Identities=24% Similarity=0.313 Sum_probs=100.6
Q ss_pred CcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCch-hccCCCCCCEEEccCCcccCccCCCccccccccccCCCC
Q 036258 158 LKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPN-TFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYL 236 (331)
Q Consensus 158 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L 236 (331)
-+++++++++++.+|..+. ..+++|++++|.+.+..+. .+..+++|++|++++|.++.+ .+..+..+++|
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L 80 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-------EPNAFEGASHI 80 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-------CTTTTTTCTTC
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-------CHhHcCCcccC
Confidence 3678888888888886554 3888888888888766553 477888888888888888763 34457788888
Q ss_pred cEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCccc
Q 036258 237 KVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGT 298 (331)
Q Consensus 237 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 298 (331)
++|++++|.+.+..+..+..++ +|++|++++|.+++..|..+..+++|+.|++++|++.+.
T Consensus 81 ~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 81 QELQLGENKIKEISNKMFLGLH-QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CEEECCSCCCCEECSSSSTTCT-TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 8888888888876666666665 788888888888877777788888888888888887743
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=4.6e-17 Score=155.00 Aligned_cols=152 Identities=24% Similarity=0.225 Sum_probs=114.9
Q ss_pred cchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCcccccc
Q 036258 149 STLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLS 228 (331)
Q Consensus 149 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 228 (331)
...+..+++|+.|++++|.+..+|..+..+++|++|++++|.+. .+|..+..+++|++|+|++|.++. +|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--------lp~ 287 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS--------LPA 287 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS--------CCS
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc--------cCh
Confidence 34445788999999999999988887888999999999999998 667888999999999999999885 455
Q ss_pred ccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCC-CCEEEccCCCCcccCCcCccCCC
Q 036258 229 SLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNG-LIDLRLQDNDLNGTIPTTVGRLQ 307 (331)
Q Consensus 229 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~ 307 (331)
.+..+++|++|+|++|.+. .+|..+..+. +|+.|+|++|.+.+.+|..+..+.. +..+++++|.+++.+|..+
T Consensus 288 ~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l---- 361 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNMVT-TLPWEFGNLC-NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER---- 361 (727)
T ss_dssp SGGGGTTCSEEECCSSCCC-CCCSSTTSCT-TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----
T ss_pred hhcCCCCCCEEECCCCCCC-ccChhhhcCC-CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc----
Confidence 6888999999999999987 7787787776 9999999999998877777655432 2346788999887776644
Q ss_pred CCCeEeccCC
Q 036258 308 QLQGLFLFGN 317 (331)
Q Consensus 308 ~L~~L~l~~n 317 (331)
+.|+++.|
T Consensus 362 --~~l~l~~n 369 (727)
T 4b8c_D 362 --RFIEINTD 369 (727)
T ss_dssp ----------
T ss_pred --ceeEeecc
Confidence 44555555
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=2.8e-14 Score=126.42 Aligned_cols=244 Identities=14% Similarity=0.165 Sum_probs=187.8
Q ss_pred hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258 51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL 130 (331)
Q Consensus 51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 130 (331)
+..+..++.+.+-+ .++ .|+...|..+ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+......+|.++++|
T Consensus 109 ~~~~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 109 TEILKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp EEECSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred EEecCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccC
Confidence 44457788888854 465 7888888875 7999999876 666667778774 799999986 5665666889999999
Q ss_pred cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEE
Q 036258 131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLD 209 (331)
Q Consensus 131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 209 (331)
+.+++..|.... ++..+| ...+|+.+.+..+ +..++ .+|..+++|+.+.+..+ +..+...+|.+ .+|+.+.
T Consensus 183 ~~l~l~~n~l~~----I~~~aF-~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 183 KKADLSKTKITK----LPASTF-VYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp CEEECTTSCCSE----ECTTTT-TTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred CeeecCCCcceE----echhhE-eecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 999997665553 455666 3689999999854 66554 77889999999999875 55566778887 6899999
Q ss_pred ccCCcccCccCCCccccccccccCCCCcEEEeeccccc-----ccCCchhhhccccccEEEeccCcccccCCccccCCCC
Q 036258 210 LGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLS-----GILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNG 284 (331)
Q Consensus 210 l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 284 (331)
+.. .++.++ ..+|.++++|+.+.+.++.+. ...+.+|.... +|+.+.+.+ .+......+|.+|.+
T Consensus 255 lp~-~i~~I~-------~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~-~L~~l~l~~-~i~~I~~~aF~~c~~ 324 (401)
T 4fdw_A 255 LPN-GVTNIA-------SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP-KLARFEIPE-SIRILGQGLLGGNRK 324 (401)
T ss_dssp EET-TCCEEC-------TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT-TCCEECCCT-TCCEECTTTTTTCCS
T ss_pred eCC-CccEEC-------hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc-cCCeEEeCC-ceEEEhhhhhcCCCC
Confidence 954 455543 345999999999999987764 23444555544 999999984 477667889999999
Q ss_pred CCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258 285 LIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320 (331)
Q Consensus 285 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 320 (331)
|+.+.+..+ ++.....+|..+ +|+.+++.+|...
T Consensus 325 L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 325 VTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred ccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 999999655 665667789999 9999999999876
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=5.9e-16 Score=123.32 Aligned_cols=130 Identities=23% Similarity=0.308 Sum_probs=100.8
Q ss_pred cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcc--cccCCCCCceeeCcCccccccCchhccCCCCCCEE
Q 036258 131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN--SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLL 208 (331)
Q Consensus 131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 208 (331)
+.++++++.... +|..++ .++++|++++|.+..++. .+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus 11 ~~l~~s~~~l~~----ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKE----IPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSS----CCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcCc----CccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 567776665543 344332 378889999888887664 37888899999999998888878888888899999
Q ss_pred EccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccC
Q 036258 209 DLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSI 275 (331)
Q Consensus 209 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 275 (331)
++++|.+..++ +..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+....
T Consensus 84 ~Ls~N~l~~~~-------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 84 QLGENKIKEIS-------NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-SLTSLNLASNPFNCNC 142 (192)
T ss_dssp ECCSCCCCEEC-------SSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-TCCEEECTTCCBCCSG
T ss_pred ECCCCcCCccC-------HHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC-CCCEEEeCCCCccCcC
Confidence 99999888643 33477888899999999998887788777776 8899999988887543
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=2.4e-15 Score=117.08 Aligned_cols=133 Identities=26% Similarity=0.285 Sum_probs=81.9
Q ss_pred CCccEEEcCCCcCc-cCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccc
Q 036258 55 SSLKMIRLSSNSLS-GSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSL 133 (331)
Q Consensus 55 ~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 133 (331)
++|++|++++|.+. +.+|.. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------- 92 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-------- 92 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH--------
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh--------
Confidence 55666666666665 455544 25566666666666666543 4556666666666666665533333222
Q ss_pred ccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc--ccccCCCCCceeeCcCccccccCc---hhccCCCCCCEE
Q 036258 134 VLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP--NSITNASELTLLELGKNSFSGLVP---NTFGNLRFLSLL 208 (331)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L 208 (331)
.+++|++|++++|.+..++ ..+..+++|+.|++++|.+.+..+ ..+..+++|++|
T Consensus 93 --------------------~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 93 --------------------KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp --------------------HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred --------------------hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence 3556666666666666554 566667777777777777765544 466677777777
Q ss_pred EccCCcccCc
Q 036258 209 DLGNNYLTTR 218 (331)
Q Consensus 209 ~l~~~~l~~~ 218 (331)
++++|.+..+
T Consensus 153 ~l~~n~~~~~ 162 (168)
T 2ell_A 153 DGYDREDQEA 162 (168)
T ss_dssp TTEETTSCBC
T ss_pred cCCCCChhhc
Confidence 7777766654
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=8.1e-16 Score=117.33 Aligned_cols=128 Identities=23% Similarity=0.197 Sum_probs=89.7
Q ss_pred CCCceeeCcCcccc-ccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhc
Q 036258 179 SELTLLELGKNSFS-GLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNF 257 (331)
Q Consensus 179 ~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 257 (331)
+++++|++++|.+. +..|..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.+|..+..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---------ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---------TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---------hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 55666666666665 44555566667777777777766642 336667777777777777775566655555
Q ss_pred cccccEEEeccCccccc-CCccccCCCCCCEEEccCCCCcccCC---cCccCCCCCCeEeccC
Q 036258 258 SDSLQQFYAYDCELKGS-IPQEIGNLNGLIDLRLQDNDLNGTIP---TTVGRLQQLQGLFLFG 316 (331)
Q Consensus 258 ~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~ 316 (331)
+ +|++|++++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++
T Consensus 88 ~-~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 88 P-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp T-TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred C-CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 5 788888888887742 33678888889999999998885443 3677888888888764
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=1.9e-15 Score=130.88 Aligned_cols=228 Identities=15% Similarity=0.129 Sum_probs=158.4
Q ss_pred CCCcchhcC--------CCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccc
Q 036258 45 VLTKNCFYN--------ISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKF 116 (331)
Q Consensus 45 ~~~~~~~~~--------~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 116 (331)
.++..+|.+ +++|+.|++.+ .++ .|++..|.+|++|+.+++.+|.+..+.+.+|..+.++..+....+..
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~ 160 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA 160 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh
Confidence 456678999 99999999998 887 89999999999999999999998878888899888888877766321
Q ss_pred ----cccCCccccCccccc-ccccCccccccccccCCcchhc---CCCCCcEEEcCCCCCCC-CcccccCCCCCceeeCc
Q 036258 117 ----TGRLPENIGNLSKLR-SLVLGHKAHNSLHGHLPSTLSV---SLPNLKWLALGMNKLRT-IPNSITNASELTLLELG 187 (331)
Q Consensus 117 ----~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~---~l~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~l~ 187 (331)
......+|.++..|+ .+.+.. .. .++..++. ...++..+.+.+.-... .......+++|+.+++.
T Consensus 161 ~~~~~~i~~~~f~~~~~L~~~i~~~~--~~----~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 161 YRFKNRWEHFAFIEGEPLETTIQVGA--MG----KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp HHTSTTTTTSCEEESCCCEEEEEECT--TC----CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECT
T ss_pred hhccccccccccccccccceeEEecC--CC----cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECC
Confidence 222334455555555 333321 11 11111111 23455666655432111 11111236788888888
Q ss_pred CccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCc-EEEeecccccccCCchhhhccccccEEEe
Q 036258 188 KNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLK-VLGLHSNQLSGILPPLIGNFSDSLQQFYA 266 (331)
Q Consensus 188 ~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 266 (331)
+|.+..+.+.+|.++.+|+.+++..+ ++.++. .+|.++++|+ .+++.+ .+....+.+|.... +|+.+++
T Consensus 235 ~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-------~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~-~L~~l~l 304 (329)
T 3sb4_A 235 KTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-------RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD-NLRYVLA 304 (329)
T ss_dssp TBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-------TTTTTCTTCCEEEEECT-TCCEECTTTTTTCT-TEEEEEE
T ss_pred CCCcceecHhhhhCCCCCCEEECCcc-cceehH-------HHhhCChhccEEEEEcc-cceEEchhhhhCCc-cCCEEEe
Confidence 88888777788888888888888887 665543 3488888888 888887 66645556666555 8899998
Q ss_pred ccCcccccCCccccCCCCCCEEEc
Q 036258 267 YDCELKGSIPQEIGNLNGLIDLRL 290 (331)
Q Consensus 267 ~~~~~~~~~~~~l~~l~~L~~L~l 290 (331)
.++.++...+.+|.++++|+.+..
T Consensus 305 ~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 305 TGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCCccCccchhhhcCCcchhhhcc
Confidence 888888777788999999988864
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.2e-14 Score=115.74 Aligned_cols=125 Identities=25% Similarity=0.410 Sum_probs=78.3
Q ss_pred ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccC
Q 036258 57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG 136 (331)
Q Consensus 57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 136 (331)
-++++++++.++ .+|..+ .++|++|++++|.+. .+|..|..+++|++|++++|.++...+..|.++++|++|+++
T Consensus 12 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 367889999888 888765 468899999999887 667788888999999999998886655666666666666665
Q ss_pred ccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcc-cccCCCCCceeeCcCcc
Q 036258 137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN-SITNASELTLLELGKNS 190 (331)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~ 190 (331)
+|.+..+ +...+..+++|++|++++|.++.++. .+..+++|+.|++++|.
T Consensus 87 ~N~l~~i----~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 87 YNRLRCI----PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCCBC----CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEe----CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 4444322 22222344444444444444443332 23334444444444443
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.7e-14 Score=114.91 Aligned_cols=127 Identities=28% Similarity=0.374 Sum_probs=90.9
Q ss_pred cEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcE
Q 036258 159 KWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKV 238 (331)
Q Consensus 159 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~ 238 (331)
++++++++.++.+|..+. ++|++|++++|.+. ..|..+..+++|++|++++|.++.++ +..+..+++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~-------~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLS-------NQSFSNMTQLLT 82 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCC-------TTTTTTCTTCCE
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeC-------HhHccCCCCCCE
Confidence 567888888888776553 57888888888887 44567777888888888888877643 234777778888
Q ss_pred EEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258 239 LGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN 296 (331)
Q Consensus 239 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 296 (331)
|++++|.+.+..+..+..++ +|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLK-SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCccCEeCHHHhCCCC-CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88888877766665666655 7777777777777544445667777777777777765
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.5e-14 Score=113.59 Aligned_cols=130 Identities=22% Similarity=0.285 Sum_probs=89.3
Q ss_pred CcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCc
Q 036258 158 LKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLK 237 (331)
Q Consensus 158 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~ 237 (331)
.+.+++.++++..+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+..++. ..+..+++|+
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~ 79 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD-------GVFDKLTKLT 79 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-------TTTTTCTTCC
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh-------hHccCCCccC
Confidence 567888888888777544 3688888888888876666677778888888888887775432 2356777777
Q ss_pred EEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcc
Q 036258 238 VLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNG 297 (331)
Q Consensus 238 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 297 (331)
+|++++|.+.+..+..+..++ +|+.|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLT-QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCCccccCHHHhhCCc-ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 777777777755444455544 67777777776664444445666667777777776664
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=4.2e-14 Score=111.04 Aligned_cols=132 Identities=21% Similarity=0.288 Sum_probs=71.1
Q ss_pred ceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccc
Q 036258 182 TLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSL 261 (331)
Q Consensus 182 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 261 (331)
+.++++++.+... |..+ .++|++|++++|.+..++ +..+..+++|++|++++|.+.+..+..+..+. +|
T Consensus 10 ~~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L 78 (177)
T 2o6r_A 10 TEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLP-------HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-KL 78 (177)
T ss_dssp TEEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCC-------TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TC
T ss_pred CEEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeC-------HHHhcCcccccEEECCCCcceEeChhHccCCC-cc
Confidence 4555555555432 2211 245666666666655432 12245556666666666666544444444444 66
Q ss_pred cEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCC
Q 036258 262 QQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP 324 (331)
Q Consensus 262 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 324 (331)
+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++.+|
T Consensus 79 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 666666666664444445566666666666666663333344556666666666666654443
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=7.9e-15 Score=111.80 Aligned_cols=126 Identities=27% Similarity=0.317 Sum_probs=71.3
Q ss_pred CCccEEEcCCCcCc-cCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccc
Q 036258 55 SSLKMIRLSSNSLS-GSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSL 133 (331)
Q Consensus 55 ~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 133 (331)
+++++|++++|.+. +.+|..+ ..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-------- 85 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-------- 85 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH--------
T ss_pred ccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh--------
Confidence 55667777777665 4555433 5666677777766666543 4566666666666666666533333332
Q ss_pred ccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc--ccccCCCCCceeeCcCccccccCc---hhccCCCCCCEE
Q 036258 134 VLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP--NSITNASELTLLELGKNSFSGLVP---NTFGNLRFLSLL 208 (331)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L 208 (331)
.+++|++|++++|.+..++ ..+..+++|++|++++|.+.+..+ ..+..+++|++|
T Consensus 86 --------------------~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 86 --------------------KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp --------------------HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred --------------------hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 3444555555555555432 455556666666666666554433 345555566665
Q ss_pred Ecc
Q 036258 209 DLG 211 (331)
Q Consensus 209 ~l~ 211 (331)
+++
T Consensus 146 ~l~ 148 (149)
T 2je0_A 146 DGY 148 (149)
T ss_dssp TTB
T ss_pred cCC
Confidence 553
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=8.1e-15 Score=115.04 Aligned_cols=130 Identities=19% Similarity=0.187 Sum_probs=63.6
Q ss_pred CCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccC
Q 036258 154 SLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC 233 (331)
Q Consensus 154 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~ 233 (331)
.+++|++|++++|.+..++......++|+.|++++|.+.+. ..+..+++|++|++++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N-------------------- 74 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN-------------------- 74 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS--------------------
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC--------------------
Confidence 44555666666655554433222222555555555555433 33444444555555554
Q ss_pred CCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCc--cccCCCCCCEEEccCCCCcccCCcC----ccCCC
Q 036258 234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQ--EIGNLNGLIDLRLQDNDLNGTIPTT----VGRLQ 307 (331)
Q Consensus 234 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~ 307 (331)
.+.+..+..+..++ +|++|++++|.+. .+|. .+..+++|+.|++++|++. .+|.. +..++
T Consensus 75 -----------~l~~~~~~~~~~l~-~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 75 -----------RICRIGEGLDQALP-DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVP 140 (176)
T ss_dssp -----------CCCEECSCHHHHCT-TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCT
T ss_pred -----------cccccCcchhhcCC-CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCC
Confidence 44432222223333 5555555555553 2333 4555556666666666655 34432 55556
Q ss_pred CCCeEeccCCee
Q 036258 308 QLQGLFLFGNNL 319 (331)
Q Consensus 308 ~L~~L~l~~n~~ 319 (331)
+|+.|++++|..
T Consensus 141 ~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 141 QVRVLDFQKVKL 152 (176)
T ss_dssp TCSEETTEECCH
T ss_pred ccceeCCCcCCH
Confidence 666666665554
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=1.8e-14 Score=113.06 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=52.8
Q ss_pred hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258 51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL 130 (331)
Q Consensus 51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 130 (331)
|.++.+|++|++++|.++ .++. +....++|++|++++|.+.+. ..+..+++|++|++++|.++...+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 566678888888888887 5653 334344888888888877754 467777788888888877763322223444444
Q ss_pred cccccC
Q 036258 131 RSLVLG 136 (331)
Q Consensus 131 ~~L~l~ 136 (331)
++|+++
T Consensus 91 ~~L~L~ 96 (176)
T 1a9n_A 91 TELILT 96 (176)
T ss_dssp CEEECC
T ss_pred CEEECC
Confidence 444443
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=3.1e-15 Score=119.77 Aligned_cols=139 Identities=21% Similarity=0.288 Sum_probs=105.7
Q ss_pred CCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccc
Q 036258 167 KLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQL 246 (331)
Q Consensus 167 ~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 246 (331)
.+..+|..+..+++|++|++++|.+.+ .| .+..+++|++|++++|.+.. ++..+..+++|++|++++|.+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~--------l~~~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK--------IENLDAVADTLEELWISYNQI 105 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS--------CSSHHHHHHHCSEEEEEEEEC
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc--------ccchhhcCCcCCEEECcCCcC
Confidence 344566678888889999998888876 44 67788889999999988875 344466678899999999988
Q ss_pred cccCCchhhhccccccEEEeccCcccccCC-ccccCCCCCCEEEccCCCCcccCCcC----------ccCCCCCCeEecc
Q 036258 247 SGILPPLIGNFSDSLQQFYAYDCELKGSIP-QEIGNLNGLIDLRLQDNDLNGTIPTT----------VGRLQQLQGLFLF 315 (331)
Q Consensus 247 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~----------l~~l~~L~~L~l~ 315 (331)
.+ +| .+..++ +|++|++++|.+.+..+ ..+..+++|+.|++++|++.+..|.. +..+++|+.|+
T Consensus 106 ~~-l~-~~~~l~-~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld-- 180 (198)
T 1ds9_A 106 AS-LS-GIEKLV-NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD-- 180 (198)
T ss_dssp CC-HH-HHHHHH-HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--
T ss_pred Cc-CC-ccccCC-CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--
Confidence 75 44 566665 89999999998874222 46888999999999999987654442 67788999886
Q ss_pred CCeee
Q 036258 316 GNNLQ 320 (331)
Q Consensus 316 ~n~~~ 320 (331)
+|.++
T Consensus 181 ~~~i~ 185 (198)
T 1ds9_A 181 GMPVD 185 (198)
T ss_dssp CGGGT
T ss_pred CcccC
Confidence 66665
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=8.9e-16 Score=122.95 Aligned_cols=114 Identities=24% Similarity=0.236 Sum_probs=72.9
Q ss_pred CCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCc
Q 036258 70 SLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPS 149 (331)
Q Consensus 70 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 149 (331)
.+|..+ ..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|....+.
T Consensus 39 ~l~~~~-~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~----- 109 (198)
T 1ds9_A 39 KMDATL-STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS----- 109 (198)
T ss_dssp CCHHHH-HHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-----
T ss_pred hhhHHH-hcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-----
Confidence 333344 778999999999988875 55 7788889999999998887 56666666677777777655544321
Q ss_pred chhcCCCCCcEEEcCCCCCCCCcc--cccCCCCCceeeCcCccccc
Q 036258 150 TLSVSLPNLKWLALGMNKLRTIPN--SITNASELTLLELGKNSFSG 193 (331)
Q Consensus 150 ~~~~~l~~L~~L~l~~~~l~~~~~--~~~~l~~L~~L~l~~n~~~~ 193 (331)
. +..+++|++|++++|.+..++. .+..+++|++|++++|.+.+
T Consensus 110 ~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 110 G-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp H-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred c-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 1 2245556666666665554332 44555555555555555543
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=9.6e-13 Score=102.46 Aligned_cols=86 Identities=22% Similarity=0.293 Sum_probs=40.2
Q ss_pred CCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEe
Q 036258 234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLF 313 (331)
Q Consensus 234 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 313 (331)
++|++|++++|.+.+..|..+..+. +|++|++++|++.+..+..+.++++|+.|++++|.+++..+..|..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 3344444444444433344444433 444555555544433333444555555555555555533333344555555555
Q ss_pred ccCCeee
Q 036258 314 LFGNNLQ 320 (331)
Q Consensus 314 l~~n~~~ 320 (331)
+++|+++
T Consensus 109 L~~N~~~ 115 (170)
T 3g39_A 109 LLNNPWD 115 (170)
T ss_dssp CCSSCBC
T ss_pred eCCCCCC
Confidence 5555544
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=1.8e-12 Score=100.90 Aligned_cols=106 Identities=25% Similarity=0.247 Sum_probs=75.7
Q ss_pred CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258 56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL 135 (331)
Q Consensus 56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 135 (331)
..++++++++.++ .+|..+ .++|++|++++|.+.+..|..|..+++|++|++++|+++...+..|..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4678999999998 788766 488999999999998877888899999999999999988555555666666666666
Q ss_pred CccccccccccCCcchhcCCCCCcEEEcCCCCCC
Q 036258 136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR 169 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 169 (331)
++|.+.. ++...+..+++|++|++++|.+.
T Consensus 86 ~~N~l~~----~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKS----IPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCC----CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCE----eCHHHhcCCCCCCEEEeCCCCCC
Confidence 5544432 22333334555555555555443
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=2.9e-12 Score=100.06 Aligned_cols=104 Identities=24% Similarity=0.263 Sum_probs=56.5
Q ss_pred ceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccc
Q 036258 182 TLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSL 261 (331)
Q Consensus 182 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 261 (331)
+.++++++.+.. +|..+. ++|++|++++|.+..+. +..+..+++|++|+|++|.+.+..+..+..+. +|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L 83 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLE-------PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT-QL 83 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCC-------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TC
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccC-------HHHhcCCcCCCEEECCCCCCCccChhHhCCcc-hh
Confidence 456666666543 233232 55666666666665532 23355666666666666666543333334443 66
Q ss_pred cEEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258 262 QQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN 296 (331)
Q Consensus 262 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 296 (331)
+.|+|++|.+.+..+..+..+++|+.|++++|++.
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 66666666665333334555666666666666655
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=3e-12 Score=100.01 Aligned_cols=105 Identities=21% Similarity=0.253 Sum_probs=75.1
Q ss_pred ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccC
Q 036258 57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG 136 (331)
Q Consensus 57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 136 (331)
-+.++++++.+. .+|..+ .++|++|++++|.+.+..|..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 478999999987 888766 4889999999999988778888999999999999998885444455666666666665
Q ss_pred ccccccccccCCcchhcCCCCCcEEEcCCCCCC
Q 036258 137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR 169 (331)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 169 (331)
+|.+. .++...+..+++|++|++.+|.+.
T Consensus 90 ~N~l~----~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLK----SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCC----CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccc----eeCHHHhccccCCCEEEeCCCCcc
Confidence 55443 223333335555666666555554
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.39 E-value=3.2e-11 Score=106.83 Aligned_cols=257 Identities=14% Similarity=0.072 Sum_probs=142.9
Q ss_pred CCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCcc----------
Q 036258 46 LTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNK---------- 115 (331)
Q Consensus 46 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~---------- 115 (331)
++..+|.++.+|+.+.+.. .++ .|+...|.++.+|+.+++..+ ++.+...+|.++..|+.+.+..+-
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeec
Confidence 5666888888888888854 365 777777888888888888654 433444556666655555443220
Q ss_pred -----------ccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCC------------------
Q 036258 116 -----------FTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN------------------ 166 (331)
Q Consensus 116 -----------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~------------------ 166 (331)
.......+|.++.+|+.+.+..+. ..+...+|..+.+|+.+.+..+
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-----~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-----ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENM 213 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-----CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBC
T ss_pred ccccccccCccccccchhhhcccCCCcEEecCCcc-----ceeccccccCCCCceEEEcCCCceEeCchhhcccccccee
Confidence 001112345555666666553211 1233333434444444444322
Q ss_pred -----CCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCC--------------ccccc
Q 036258 167 -----KLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT--------------EWSFL 227 (331)
Q Consensus 167 -----~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~--------------~~~~~ 227 (331)
.. .+.........|+.+.+... +.......+..+..++.+.+..+... +.... ..-..
T Consensus 214 ~~~~~~~-~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~ 290 (394)
T 4fs7_A 214 EFPNSLY-YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE 290 (394)
T ss_dssp CCCTTCC-EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT
T ss_pred ecCCCce-EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc
Confidence 11 11112223345565555432 12233345555666666665443211 10000 00011
Q ss_pred cccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCC
Q 036258 228 SSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQ 307 (331)
Q Consensus 228 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 307 (331)
..+..+.+|+.+.+.++ +......++.... +|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.....+|.+++
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCT-SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred ccccccccccccccccc-cceechhhhcCCC-CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 24667788888888654 4433344444444 8888888644 55556778889999999998766 6645567888899
Q ss_pred CCCeEeccCC
Q 036258 308 QLQGLFLFGN 317 (331)
Q Consensus 308 ~L~~L~l~~n 317 (331)
+|+.+++..+
T Consensus 367 ~L~~i~lp~~ 376 (394)
T 4fs7_A 367 NLKKVELPKR 376 (394)
T ss_dssp TCCEEEEEGG
T ss_pred CCCEEEECCC
Confidence 9999988654
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.37 E-value=4.2e-11 Score=106.14 Aligned_cols=111 Identities=10% Similarity=0.204 Sum_probs=69.3
Q ss_pred chhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccC
Q 036258 196 PNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSI 275 (331)
Q Consensus 196 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 275 (331)
..+|..+..|+.+.+.... ..++ ...+.+++.|+.+.+.. .+......+|... .+|+.+.+..+ ++...
T Consensus 258 ~~aF~~c~~L~~i~lp~~~-~~I~-------~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c-~~L~~i~lp~~-v~~I~ 326 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSV-VSIG-------TGAFMNCPALQDIEFSS-RITELPESVFAGC-ISLKSIDIPEG-ITQIL 326 (394)
T ss_dssp TTTTTTCSSCCEEECCTTC-CEEC-------TTTTTTCTTCCEEECCT-TCCEECTTTTTTC-TTCCEEECCTT-CCEEC
T ss_pred cceeeecccccEEeccccc-ceec-------CcccccccccccccCCC-cccccCceeecCC-CCcCEEEeCCc-ccEeh
Confidence 3456667777777775432 2221 23467777777777753 3432333344333 37888888653 44455
Q ss_pred CccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCe
Q 036258 276 PQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNN 318 (331)
Q Consensus 276 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 318 (331)
..+|.+|.+|+++.+..+ ++.....+|.+|.+|+.+++.++.
T Consensus 327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 667888888888888543 553445678888888888887764
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.37 E-value=4.7e-11 Score=105.80 Aligned_cols=250 Identities=12% Similarity=0.094 Sum_probs=161.4
Q ss_pred CccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCcccc------
Q 036258 67 LSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAH------ 140 (331)
Q Consensus 67 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~------ 140 (331)
++ .|....|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+-.
T Consensus 59 Vt-sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~a 135 (394)
T 4fs7_A 59 VV-SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEA 135 (394)
T ss_dssp EE-EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred Ee-EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeeccee
Confidence 55 788888999999999999854 66677788999999999999765 4445556788888888776643110
Q ss_pred -----------ccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEE
Q 036258 141 -----------NSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLD 209 (331)
Q Consensus 141 -----------~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 209 (331)
......+...+|..+.+|+.+.+..+....-...|..+.+|+.+.+..+ +......+|..+..|+.+.
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 0001123456677899999999976543322367888899999988765 3334455666666666665
Q ss_pred ccCCcc------------cCc--cCCCccccccccccCCCCcEEEeeccccc-------------------ccCCchhhh
Q 036258 210 LGNNYL------------TTR--SSTTEWSFLSSLTNCIYLKVLGLHSNQLS-------------------GILPPLIGN 256 (331)
Q Consensus 210 l~~~~l------------~~~--~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-------------------~~~~~~~~~ 256 (331)
+..+.. +.+ +.....-....+..+..++.+.+..+... ..++...+.
T Consensus 215 ~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~ 294 (394)
T 4fs7_A 215 FPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFY 294 (394)
T ss_dssp CCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTT
T ss_pred cCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecccccc
Confidence 543211 110 00000011234566777777777654321 011222222
Q ss_pred ccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCC
Q 036258 257 FSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP 324 (331)
Q Consensus 257 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 324 (331)
...+|+.+.+..+ +......+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++ .|+
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~ 358 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIG 358 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EEC
T ss_pred ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-Eeh
Confidence 2347888887654 44455678899999999999654 66455678999999999999776 55 444
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=4.3e-14 Score=124.01 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=38.4
Q ss_pred CCCcEEEcCCCCCCC-----CcccccCCCCCceeeCcCcccccc----CchhccCCCCCCEEEccCCcccCccCCCcccc
Q 036258 156 PNLKWLALGMNKLRT-----IPNSITNASELTLLELGKNSFSGL----VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSF 226 (331)
Q Consensus 156 ~~L~~L~l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 226 (331)
++|++|++++|.++. ++..+...++|++|++++|.+.+. +...+...++|++|++++|.++..+.. .+
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~---~l 231 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL---AL 231 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH---HH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH---HH
Confidence 445555555554431 223334445555555555554421 123333444455555555544432111 12
Q ss_pred ccccccCCCCcEEEeeccccc
Q 036258 227 LSSLTNCIYLKVLGLHSNQLS 247 (331)
Q Consensus 227 ~~~~~~~~~L~~L~l~~n~~~ 247 (331)
...+...+.|++|+|++|.+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 222333444555555555544
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.24 E-value=1.7e-09 Score=95.73 Aligned_cols=265 Identities=13% Similarity=0.168 Sum_probs=165.1
Q ss_pred CCCCcchhcCCC-CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCc---ccccCCccCcCCCCCCEEEccCcccccc
Q 036258 44 SVLTKNCFYNIS-SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNG---FFGQIPLSLSKCTQLQHLWLEHNKFTGR 119 (331)
Q Consensus 44 ~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 119 (331)
..++.++|.+++ .|+.+.+-.+ ++ .|....|.++.+|+.+.+..+. ++.+...+|..+.+|+.+.+..+ ++..
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 345666788875 4888888543 65 7777788888888888887652 44455567778888887777554 3334
Q ss_pred CCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchh
Q 036258 120 LPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNT 198 (331)
Q Consensus 120 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~ 198 (331)
...+|..+.+|+.+.+..+ . ..+...+|..+.+|+.+.+..+ +..+. .+|. ...|+.+.+..+-. .....+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~----~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~a 200 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-V----TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNA 200 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-C----CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTT
T ss_pred hhhhhhhhcccccccccce-e----eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccch
Confidence 4566777788888777421 1 1344555667777777777654 33333 2333 35666666654322 233344
Q ss_pred ccCCCCCCEEEccCCcccCc-----------------------------cCCCccccccccccCCCCcEEEeeccccccc
Q 036258 199 FGNLRFLSLLDLGNNYLTTR-----------------------------SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGI 249 (331)
Q Consensus 199 l~~~~~L~~L~l~~~~l~~~-----------------------------~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 249 (331)
|..+..++............ +.....-...+|..+..|+.+.+.++... .
T Consensus 201 f~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I 279 (394)
T 4gt6_A 201 FSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-I 279 (394)
T ss_dssp TTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-E
T ss_pred hhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-e
Confidence 55555555544332211110 00000012245788899999998765432 3
Q ss_pred CCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCc
Q 036258 250 LPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPS 325 (331)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 325 (331)
...++.... .|+.+.+. +.++.....+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+-.+ ++ .|++
T Consensus 280 ~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~ 350 (394)
T 4gt6_A 280 GTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPE 350 (394)
T ss_dssp CTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCG
T ss_pred cCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhH
Confidence 334444444 89999986 4455566778999999999999764 66455678999999999999654 55 5553
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=3.2e-13 Score=118.45 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=118.5
Q ss_pred CCCccEEEcCCCcCccC----CChhhhcCCCCCcEEEccCCcccccCCccC-cCCCCCCEEEccCccccccCCccc----
Q 036258 54 ISSLKMIRLSSNSLSGS----LPNDLCNRLPSLEQLVLRSNGFFGQIPLSL-SKCTQLQHLWLEHNKFTGRLPENI---- 124 (331)
Q Consensus 54 ~~~L~~L~l~~~~i~~~----~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~---- 124 (331)
+++|++|++++|.++.. +...+....++|+.|+|++|.+.......+ ..+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46799999999998732 222221234799999999998864333333 345789999999999874433333
Q ss_pred -cCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC-----CcccccCCCCCceeeCcCcccccc----
Q 036258 125 -GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT-----IPNSITNASELTLLELGKNSFSGL---- 194 (331)
Q Consensus 125 -~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~~~---- 194 (331)
...++|++|++++|.+...............++|++|++++|.+.. ++..+...+.|++|++++|.+.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2467899999988776543322222223478899999999999872 356677788999999999999753
Q ss_pred CchhccCCCCCCEEEccCCcccCc
Q 036258 195 VPNTFGNLRFLSLLDLGNNYLTTR 218 (331)
Q Consensus 195 ~~~~l~~~~~L~~L~l~~~~l~~~ 218 (331)
+...+...++|++|++++|.+...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 334455678999999999998763
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.16 E-value=8.2e-09 Score=90.82 Aligned_cols=253 Identities=12% Similarity=0.107 Sum_probs=139.8
Q ss_pred cCCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCcccccc
Q 036258 40 ADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGR 119 (331)
Q Consensus 40 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 119 (331)
++....++..+|.++.+|+.+.+..+ ++ .|+...|..+ +|+.+.+..+ +..+...+|... +|+.+.+..+-.. .
T Consensus 54 p~~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~~~-i 127 (379)
T 4h09_A 54 NSGITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGATTE-I 127 (379)
T ss_dssp CTTEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTCCE-E
T ss_pred CCCccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCcccc-c
Confidence 35556677788999999999999644 65 7777888776 6777776644 443444455543 6888877654221 2
Q ss_pred CCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCC---------------------------------
Q 036258 120 LPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN--------------------------------- 166 (331)
Q Consensus 120 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~--------------------------------- 166 (331)
...+|.+. +++.+.+..+ .. .+...+|..+.+++.+.+...
T Consensus 128 ~~~~F~~~-~l~~~~~~~~-v~----~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
T 4h09_A 128 GNYIFYNS-SVKRIVIPKS-VT----TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTI 201 (379)
T ss_dssp CTTTTTTC-CCCEEEECTT-CC----EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEEC
T ss_pred cccccccc-eeeeeeccce-ee----ccccchhcccccccccccccccceeecccceecccccceecccccccccccccc
Confidence 22222222 2333322110 00 111222223333333333221
Q ss_pred ---CCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeec
Q 036258 167 ---KLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHS 243 (331)
Q Consensus 167 ---~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 243 (331)
........+.....++.+.+..+ +......++..+..|+.+.+..+ ++.++. ..+..+.+|+.+.+..
T Consensus 202 ~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~-------~aF~~~~~l~~i~l~~ 272 (379)
T 4h09_A 202 PSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS-------FLLQNCTALKTLNFYA 272 (379)
T ss_dssp CTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT-------TTTTTCTTCCEEEECC
T ss_pred ccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc-------cccceeehhccccccc
Confidence 11111223344455555555433 22344456666777777777654 443322 2366777777777754
Q ss_pred ccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccC
Q 036258 244 NQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFG 316 (331)
Q Consensus 244 n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 316 (331)
+ +.......+... .+|+.+.+.++.+......+|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+..
T Consensus 273 ~-i~~i~~~aF~~c-~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 273 K-VKTVPYLLCSGC-SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp C-CSEECTTTTTTC-TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred c-ceeccccccccc-cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 3 332223333333 37888888777776566677888888888888543 5534456777777888777754
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=1.6e-10 Score=100.46 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=69.3
Q ss_pred eeeCcCc-cccccCchhccCCCCCCEEEccC-CcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhcccc
Q 036258 183 LLELGKN-SFSGLVPNTFGNLRFLSLLDLGN-NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDS 260 (331)
Q Consensus 183 ~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 260 (331)
.++++++ .+.. +|. +..+.+|++|+|++ |.+..+ .+..+..+++|++|+|++|.+.+..|..|..+. +
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~-------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~ 81 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHL-------ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP-R 81 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEE-------CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS-C
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCc-------ChhHhccccCCCEEECCCCccceeCHHHhcCCc-C
Confidence 4566666 6654 455 77777788888875 777653 224477777777777777777766666666665 7
Q ss_pred ccEEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258 261 LQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN 296 (331)
Q Consensus 261 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 296 (331)
|+.|+|++|++.+..+..+..++ |+.|++.+|++.
T Consensus 82 L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 82 LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 77777777777744444454444 777777777776
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=2e-10 Score=99.88 Aligned_cols=103 Identities=21% Similarity=0.188 Sum_probs=65.3
Q ss_pred EEEcCCC-cCccCCChhhhcCCCCCcEEEccC-CcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccC
Q 036258 59 MIRLSSN-SLSGSLPNDLCNRLPSLEQLVLRS-NGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG 136 (331)
Q Consensus 59 ~L~l~~~-~i~~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 136 (331)
.++++++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|..+++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566666 666 5666 36666777777774 66665555667777777777777777776666666777777777776
Q ss_pred ccccccccccCCcchhcCCCCCcEEEcCCCCCC
Q 036258 137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR 169 (331)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 169 (331)
+|.+.. ++...+..++ |++|++.+|.+.
T Consensus 89 ~N~l~~----~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALES----LSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSC----CCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccce----eCHHHcccCC-ceEEEeeCCCcc
Confidence 555542 3334443333 777777776665
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=1.5e-10 Score=100.70 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=95.6
Q ss_pred cCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhcc--CCCCCCEEEccCC--cccCccCCCcccccc
Q 036258 153 VSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFG--NLRFLSLLDLGNN--YLTTRSSTTEWSFLS 228 (331)
Q Consensus 153 ~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~~~L~~L~l~~~--~l~~~~~~~~~~~~~ 228 (331)
..+|+|+.|.+.++.-..++. +. +++|++|++..+.+.......+. .+++|++|+|+.+ ..... ... ..+..
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~-~~~-~~l~~ 244 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD-GDM-NVFRP 244 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC-SCG-GGTGG
T ss_pred hcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc-hhH-HHHHH
Confidence 367788888887663123333 32 67888888887776543223333 5788888887532 11110 000 01111
Q ss_pred cc--ccCCCCcEEEeecccccccCCchhhh--ccccccEEEeccCccccc----CCccccCCCCCCEEEccCCCCcccCC
Q 036258 229 SL--TNCIYLKVLGLHSNQLSGILPPLIGN--FSDSLQQFYAYDCELKGS----IPQEIGNLNGLIDLRLQDNDLNGTIP 300 (331)
Q Consensus 229 ~~--~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~ 300 (331)
.+ ..+|+|++|++.+|.+.+..+..+.. ..+.|++|+|+.|.+.+. ++..+.++++|+.|++++|.+++...
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 12 35788999999888876544444432 234888899988888753 33344567888899998888875433
Q ss_pred cCccC-CCCCCeEeccCCe
Q 036258 301 TTVGR-LQQLQGLFLFGNN 318 (331)
Q Consensus 301 ~~l~~-l~~L~~L~l~~n~ 318 (331)
..+.. + ...+++++++
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 33332 2 3557777765
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.84 E-value=9.7e-07 Score=77.48 Aligned_cols=245 Identities=13% Similarity=0.112 Sum_probs=156.0
Q ss_pred hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258 51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL 130 (331)
Q Consensus 51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 130 (331)
|....+|+.+.+.. .++ .|++..|.+|.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +......+|.. .+|
T Consensus 42 ~~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp GGGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred cccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 56667899998854 576 888999999999999999765 665666778776 6888877654 44233445544 478
Q ss_pred cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCcccc-----------------
Q 036258 131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFS----------------- 192 (331)
Q Consensus 131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~----------------- 192 (331)
+.+.+..+ .. .+...+|.. .+++.+.+..+ +..+ ...+..+..++.+.+......
T Consensus 116 ~~i~lp~~-~~----~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (379)
T 4h09_A 116 DDFEFPGA-TT----EIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188 (379)
T ss_dssp SEEECCTT-CC----EECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred ccccCCCc-cc----ccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceec
Confidence 88887432 11 333445533 35666665443 2222 244555666666554432111
Q ss_pred ------------------ccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchh
Q 036258 193 ------------------GLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLI 254 (331)
Q Consensus 193 ------------------~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 254 (331)
......+..+..++.+.+..+ +..+ ....+..+..|+.+.+..+ ++.....++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i-------~~~~f~~~~~L~~i~lp~~-v~~I~~~aF 259 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTL-------GDGAFYGMKALDEIAIPKN-VTSIGSFLL 259 (379)
T ss_dssp ECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEE-------CTTTTTTCSSCCEEEECTT-CCEECTTTT
T ss_pred cccccccccccccccceeEEeecccccccccceeeeccc-eeEE-------ccccccCCccceEEEcCCC-ccEeCcccc
Confidence 011223344455666555433 2222 2334778888999998765 443334444
Q ss_pred hhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258 255 GNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320 (331)
Q Consensus 255 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 320 (331)
.... .++.+.+..+ +.......+.++.+|+.+.+.++.++.....+|.++.+|+.+.+.++ ++
T Consensus 260 ~~~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~ 322 (379)
T 4h09_A 260 QNCT-ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK 322 (379)
T ss_dssp TTCT-TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred ceee-hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc
Confidence 4443 8898888654 44455678899999999999998888666678999999999999654 44
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=1.5e-09 Score=94.42 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=96.8
Q ss_pred CcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCcccccccc--ccCCCCcEEEeec--ccc
Q 036258 171 IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSL--TNCIYLKVLGLHS--NQL 246 (331)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~--n~~ 246 (331)
+...+..++.|+.|.++++.-.. .+. +. .++|++|++..+.+.. +....+ ..+|+|++|+|.. +..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~-l~~-~~-~~~L~~L~L~~~~l~~-------~~l~~l~~~~lp~L~~L~L~~~~~~~ 233 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS-IGK-KP-RPNLKSLEIISGGLPD-------SVVEDILGSDLPNLEKLVLYVGVEDY 233 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB-CCS-CB-CTTCSEEEEECSBCCH-------HHHHHHHHSBCTTCCEEEEECBCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCce-ecc-cc-CCCCcEEEEecCCCCh-------HHHHHHHHccCCCCcEEEEecccccc
Confidence 44566778999999998873222 222 33 7899999999888764 222223 3789999999863 221
Q ss_pred ccc-----CCchhh-hccccccEEEeccCcccccCCccc---cCCCCCCEEEccCCCCccc----CCcCccCCCCCCeEe
Q 036258 247 SGI-----LPPLIG-NFSDSLQQFYAYDCELKGSIPQEI---GNLNGLIDLRLQDNDLNGT----IPTTVGRLQQLQGLF 313 (331)
Q Consensus 247 ~~~-----~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~ 313 (331)
.+. +...+. ...++|++|++.+|.+.+..+..+ ..+++|+.|+++.|.+.+. ++..+..+++|+.|+
T Consensus 234 ~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~ 313 (362)
T 2ra8_A 234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313 (362)
T ss_dssp TCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEE
T ss_pred ccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEE
Confidence 111 111221 123499999999999875443333 2578999999999999863 344456689999999
Q ss_pred ccCCeeeec
Q 036258 314 LFGNNLQGS 322 (331)
Q Consensus 314 l~~n~~~~~ 322 (331)
+++|.++..
T Consensus 314 L~~n~i~d~ 322 (362)
T 2ra8_A 314 MKYNYLSDE 322 (362)
T ss_dssp CCSBBCCHH
T ss_pred CCCCcCCHH
Confidence 999988743
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=1.3e-09 Score=85.86 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=37.3
Q ss_pred cccEEEeccCccccc----CCccccCCCCCCEEEc--cCCCCccc----CCcCccCCCCCCeEeccCCeee
Q 036258 260 SLQQFYAYDCELKGS----IPQEIGNLNGLIDLRL--QDNDLNGT----IPTTVGRLQQLQGLFLFGNNLQ 320 (331)
Q Consensus 260 ~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~ 320 (331)
.|++|+|++|.+.+. +...+...+.|++|++ ++|.+... +.+.+...++|++|++++|.+.
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 555555555555532 3445566667777777 66777642 2334445577777887777764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=8.2e-09 Score=81.18 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=6.8
Q ss_pred cCCCCCCEEEccCc
Q 036258 101 SKCTQLQHLWLEHN 114 (331)
Q Consensus 101 ~~l~~L~~L~l~~n 114 (331)
...++|++|++++|
T Consensus 33 ~~~~~L~~L~L~~n 46 (185)
T 1io0_A 33 NNDPDLEEVNLNNI 46 (185)
T ss_dssp TTCTTCCEEECTTC
T ss_pred hcCCCCCEEEecCC
Confidence 34445555555544
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.34 E-value=2.3e-07 Score=71.35 Aligned_cols=84 Identities=11% Similarity=0.137 Sum_probs=57.7
Q ss_pred CCCEEEccCCcccCccCCCccccccccccCCCCcEEEeeccc-ccccCCchhhhc---cccccEEEeccCc-ccccCCcc
Q 036258 204 FLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ-LSGILPPLIGNF---SDSLQQFYAYDCE-LKGSIPQE 278 (331)
Q Consensus 204 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~---~~~L~~L~l~~~~-~~~~~~~~ 278 (331)
.|++|++++|.++. .....+..+++|++|+|++|. +++..-..+... .++|++|++++|. +++.....
T Consensus 62 ~L~~LDLs~~~Itd-------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSCIMS-------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CEEEEEEESCCCCG-------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred eEeEEeCcCCCccH-------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 47777777776654 233445677778888887774 665555555543 2368888888874 77665566
Q ss_pred ccCCCCCCEEEccCCC
Q 036258 279 IGNLNGLIDLRLQDND 294 (331)
Q Consensus 279 l~~l~~L~~L~l~~n~ 294 (331)
+..+++|+.|++++++
T Consensus 135 L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGGCTTCCEEEEESCT
T ss_pred HhcCCCCCEEECCCCC
Confidence 7778888888888886
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=8.4e-07 Score=73.36 Aligned_cols=78 Identities=24% Similarity=0.270 Sum_probs=41.5
Q ss_pred CCCCcEEEeecccccc--cCCchhhhccccccEEEeccCcccccCCccccCCC--CCCEEEccCCCCcccCCc-------
Q 036258 233 CIYLKVLGLHSNQLSG--ILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLN--GLIDLRLQDNDLNGTIPT------- 301 (331)
Q Consensus 233 ~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~------- 301 (331)
+++|++|+|++|.+.+ .++..+..++ +|+.|+|++|.+.+. ..+..+. +|++|++.+|++.+..|+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHST-TCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCC-CCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4444444444444443 2223333333 555555555555432 1222333 788888888888765542
Q ss_pred CccCCCCCCeEe
Q 036258 302 TVGRLQQLQGLF 313 (331)
Q Consensus 302 ~l~~l~~L~~L~ 313 (331)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 355678888775
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=7.8e-07 Score=73.55 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=62.5
Q ss_pred CCcchhcCCCCccE--EEcCCCcCccCCCh---hhhcCCCCCcEEEccCCcccc--cCCccCcCCCCCCEEEccCccccc
Q 036258 46 LTKNCFYNISSLKM--IRLSSNSLSGSLPN---DLCNRLPSLEQLVLRSNGFFG--QIPLSLSKCTQLQHLWLEHNKFTG 118 (331)
Q Consensus 46 ~~~~~~~~~~~L~~--L~l~~~~i~~~~~~---~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~~~~ 118 (331)
+....|...+.|+. ++++.|... .++. .+...+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.+++
T Consensus 132 LdLs~l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 132 LDLKGLRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp EECTTGGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred cCHHHcCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 33334555555665 556666432 2221 122456777777777777765 334445567777777777777763
Q ss_pred cCCccccCcc--cccccccCccccccccccCC------cchhcCCCCCcEEEc
Q 036258 119 RLPENIGNLS--KLRSLVLGHKAHNSLHGHLP------STLSVSLPNLKWLAL 163 (331)
Q Consensus 119 ~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~------~~~~~~l~~L~~L~l 163 (331)
. ..+..+. +|++|++.+|.... .++ ..+...+|+|+.|+-
T Consensus 211 ~--~~l~~l~~l~L~~L~L~~Npl~~---~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 211 E--RELDKIKGLKLEELWLDGNSLCD---TFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp G--GGGGGGTTSCCSEEECTTSTTGG---GCSSHHHHHHHHHHHCTTCCEESS
T ss_pred c--hhhhhcccCCcceEEccCCcCcc---ccCcchhHHHHHHHHCcccCeECC
Confidence 3 2233333 77777776555442 121 123446777877764
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=2.9e-07 Score=70.77 Aligned_cols=89 Identities=8% Similarity=0.188 Sum_probs=71.0
Q ss_pred ccCCCCcEEEeecccccccCCchhhhccccccEEEeccCc-ccccCCccccCC----CCCCEEEccCCC-CcccCCcCcc
Q 036258 231 TNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCE-LKGSIPQEIGNL----NGLIDLRLQDND-LNGTIPTTVG 304 (331)
Q Consensus 231 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~l~ 304 (331)
..-.+|++|+++++.+++.....+..++ .|++|+|++|. +++.....+..+ ++|++|++++|. +++..-..+.
T Consensus 58 ~~~~~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 58 LDKYKIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp TTCCCEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred CCCceEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 3445799999999999877777776665 99999999995 776555556654 479999999986 8765445677
Q ss_pred CCCCCCeEeccCCe-ee
Q 036258 305 RLQQLQGLFLFGNN-LQ 320 (331)
Q Consensus 305 ~l~~L~~L~l~~n~-~~ 320 (331)
.+++|++|++++|+ ++
T Consensus 137 ~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GCTTCCEEEEESCTTCC
T ss_pred cCCCCCEEECCCCCCCC
Confidence 89999999999987 55
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.59 E-value=8.1e-06 Score=63.93 Aligned_cols=120 Identities=12% Similarity=0.168 Sum_probs=56.3
Q ss_pred cCCCCCceeeCcCc-ccccc----CchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccC
Q 036258 176 TNASELTLLELGKN-SFSGL----VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGIL 250 (331)
Q Consensus 176 ~~l~~L~~L~l~~n-~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 250 (331)
.+-+.|++|+++++ .+... +.+.+..-..|+.|+|++|.+...+.. .+...+...+.|++|+|++|.|.+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~---alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR---GLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT---THHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH---HHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34456666666653 44321 223344444566666666655542221 23333444455555555555554332
Q ss_pred CchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCC---CCcc----cCCcCccCCCCCCeEeccCCee
Q 036258 251 PPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN---DLNG----TIPTTVGRLQQLQGLFLFGNNL 319 (331)
Q Consensus 251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n---~l~~----~~~~~l~~l~~L~~L~l~~n~~ 319 (331)
... +.+++...+.|++|++++| .+.. .+.+++...++|+.|+++.|.+
T Consensus 115 a~a---------------------la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LAR---------------------LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHH---------------------HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHH---------------------HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 222 2233444455666666543 2221 1223344455666666665543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.46 E-value=2.6e-05 Score=61.04 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=32.2
Q ss_pred ccccCCCCCceeeCcCcccccc----CchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeeccc
Q 036258 173 NSITNASELTLLELGKNSFSGL----VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ 245 (331)
Q Consensus 173 ~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 245 (331)
..+..-+.|++|++++|.|... +.+.+..-..|++|+|+++....++......+...+...+.|++|++..+.
T Consensus 92 ~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 92 ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4444445566666666655432 123344344466666654322111100000233344455556666665444
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.00086 Score=48.85 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=44.8
Q ss_pred cEEEcCCCcCc-cCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCcccc
Q 036258 58 KMIRLSSNSLS-GSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFT 117 (331)
Q Consensus 58 ~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 117 (331)
++++.++++++ ..+|..+ .++|+.|+|++|.|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888774 3677544 457899999999998766777888899999999998775
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.59 E-value=0.0051 Score=44.67 Aligned_cols=55 Identities=25% Similarity=0.353 Sum_probs=33.5
Q ss_pred EEEcCCCCCC--CCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCccc
Q 036258 160 WLALGMNKLR--TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLT 216 (331)
Q Consensus 160 ~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 216 (331)
.++.++++++ .+|..+ ..++++|++++|.+....+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555666665 666443 235666677777666655566666666666666666554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.71 E-value=1.8 Score=29.35 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=20.3
Q ss_pred CCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccC
Q 036258 43 YSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRS 89 (331)
Q Consensus 43 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~ 89 (331)
...+...+|.++..|+.+.+-.+ ++ .|....|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 33444444555555555544322 32 34444444444454444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.59 E-value=1.8 Score=29.40 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=41.1
Q ss_pred CCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCc
Q 036258 64 SNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114 (331)
Q Consensus 64 ~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 114 (331)
+..++ .|....|.+|..|+.+.+..+ ++.+...+|.++.+|+.+.+...
T Consensus 5 g~~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44566 788889999999999999875 55566778999999999999875
Done!