BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036262
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 15/183 (8%)
Query: 2 RSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTV 61
S G+ IS + + DDC+++ G +++ + +C GHG+S+GS+G + + V +T+
Sbjct: 160 ESTGVYISGATVKNQDDCIAINSG-ESISFTGGTCSGGHGLSIGSVGG-RDDNTVKNVTI 217
Query: 62 INCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVEN-PIVIDQEYCPHNQCNIKVP 120
+ T + ++NGVRIKT E G S T+ ++ ++ + + IVI+Q+Y N P
Sbjct: 218 SDSTVSNSANGVRIKTIY-KETGDVSEITYSNIQLSGITDYGIVIEQDY--ENGSPTGTP 274
Query: 121 SR-VKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISS-C 178
S + I++V + GT L +A ++ I C + D ++G+D G S C
Sbjct: 275 STGIPITDVTVDGVTGT-LEDDATQVY----ILCGDGSCSD--WTWSGVDLSGGKTSDKC 327
Query: 179 SNV 181
NV
Sbjct: 328 ENV 330
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 90/182 (49%), Gaps = 13/182 (7%)
Query: 1 GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLT 60
G S + IS + + DDCV++ G +N+ S C GHG+S+GS+G + + V +T
Sbjct: 164 GTSTYVTISGATVYNQDDCVAVNSG-ENIYFSGGYCSGGHGLSIGSVGG-RSDNTVKNVT 221
Query: 61 VINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNV-ENPIVIDQEYCPHNQCNIKV 119
++ T + NGVRIKT D+ G S+ T++D+ + ++ + IV+ Q Y +
Sbjct: 222 FVDSTIINSDNGVRIKTNIDTT-GSVSDVTYKDITLTSIAKYGIVVQQNY---GDTSSTP 277
Query: 120 PSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISSCS 179
+ V I++ N+ G+ ++ ++ C + D+++ G S C+
Sbjct: 278 TTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVSV------SGGKTSSKCT 331
Query: 180 NV 181
NV
Sbjct: 332 NV 333
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 15/184 (8%)
Query: 1 GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLT 60
G S G+ IS + + DDC+++ G+ N+ + +C GHG+S+GS+G + + V +T
Sbjct: 160 GSSTGVYISGANVKNQDDCLAINSGT-NITFTGGTCSGGHGLSIGSVGG-RSDNTVKTVT 217
Query: 61 VINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNV-ENPIVIDQEYCPHNQCNIKV 119
+ N + NGVRIKT G S T+ + ++N+ + IVI+Q+Y N
Sbjct: 218 ISNSKIVNSDNGVRIKT-VSGATGSVSGVTYSGITLSNIAKYGIVIEQDY--ENGSPTGT 274
Query: 120 PSR-VKISNVRFRNIRGT-SLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISS 177
P+ V I+ + I G+ + + V I+C+ C N + +++ G +
Sbjct: 275 PTNGVPITGLTLSKITGSVASSGTNVYILCASG-ACSNWKWSGVSVT------GGKKSTK 327
Query: 178 CSNV 181
CSN+
Sbjct: 328 CSNI 331
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 2 RSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTV 61
S+ + + N+ + DDCV++ G+ N++VS++ C GHG+S+GS+G K + V G+
Sbjct: 173 SSDHVTLDNNHVYNQDDCVAVTSGT-NIVVSNMYCSGGHGLSIGSVGG-KSDNVVDGVQF 230
Query: 62 INCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIV-IDQEYCPHNQCNIKVP 120
++ + NG RIK+ G +N T++++ + N+ V + Q+Y K
Sbjct: 231 LSSQVVNSQNGCRIKS-NSGATGTINNVTYQNIALTNISTYGVDVQQDYLNGGPTG-KPT 288
Query: 121 SRVKISNVRFRNIRGT 136
+ VKISN++F + GT
Sbjct: 289 NGVKISNIKFIKVTGT 304
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 18/146 (12%)
Query: 3 SNGIEISNSIIATGDDCVSLGD-----GSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVV 57
S I I+ S IATGDD V++ ++N+ + G GHG+S+GS + V
Sbjct: 209 SKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGS-----ETMGVY 263
Query: 58 GLTVINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNI 117
+TV + GT+NG+RIK+ S G + + ++ M NV PIVID Y N
Sbjct: 264 NVTVDDLKMNGTTNGLRIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSN- 321
Query: 118 KVPSRVKISNVRFRNIRGTSLTKEAV 143
VP S++ F+++ TS TK V
Sbjct: 322 -VPD---WSDITFKDV--TSETKGVV 341
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 1 GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLT 60
G S G+ I + DDC+++ G +N+ + +C GHG+S+GS+G + V +T
Sbjct: 185 GNSVGVNIIKPWVHNQDDCLAVNSG-ENIWFTGGTCIGGHGLSIGSVGD-RSNNVVKNVT 242
Query: 61 VINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVP 120
+ + T + + N VRIKT G S T+ ++ M+ + + V+ Q+ + K
Sbjct: 243 IEHSTVSNSENAVRIKT-ISGATGSVSEITYSNIVMSGISDYGVVIQQDYEDGKPTGKPT 301
Query: 121 SRVKISNVRFRNIRGT 136
+ V I +V+ ++ G+
Sbjct: 302 NGVTIQDVKLESVTGS 317
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 18/162 (11%)
Query: 6 IEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCT 65
+E++N D+CV++ + N+LV + C G ++GSLG D+V V
Sbjct: 191 VEVTNK-----DECVTVKSPANNILVESIYCNWSGGCAMGSLGADTDVTDIVYRNV---- 241
Query: 66 FTGTSNGVR-IKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVK 124
+T +SN + IK+ + G SN E+ + + ID + + V+
Sbjct: 242 YTWSSNQMYMIKS--NGGSGTVSNVLLENFIGHGNAYSLDIDGYW---SSMTAVAGDGVQ 296
Query: 125 ISNVRFRNIRGT---SLTKEAVRIVCSKEIPCQNVEIGDINL 163
++N+ +N +GT T+ +R+VCS PC ++ + DI +
Sbjct: 297 LNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAI 338
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 3 SNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVI 62
+N + I N I+ DDC+++ DG N+ + C GHGIS+GS+ K +VV +
Sbjct: 159 ANNVTIQNCIVKNQDDCIAINDG-NNIRFENNQCSGGHGISIGSIATGKHVSNVV---IK 214
Query: 63 NCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNV-ENPIVIDQEY 109
T T + GVRIK + S T++ ++ + + ++I Q Y
Sbjct: 215 GNTVTRSMYGVRIKAQRTATSASVSGVTYDANTISGIAKYGVLISQSY 262
>pdb|2GRK|A Chain A, Crystal Structure Of Ectromelia Virus Evm1 Chemokine
Binding Protein
pdb|2GRK|B Chain B, Crystal Structure Of Ectromelia Virus Evm1 Chemokine
Binding Protein
Length = 228
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 74 RIKTWPDSEDGKASNFTFEDLF-MNNVENPIVIDQEYCPH-NQC----NIKVPSRVKISN 127
+IK+ +S DG N + M +E+P + +E N C NIK K SN
Sbjct: 81 QIKSISESADGNTVNARLSSVSPMYGIESPAITHEEALAMINDCAVSINIKCSEEEKDSN 140
Query: 128 VRFRNIRGTSLTKEAVR 144
++ + G++++ + VR
Sbjct: 141 IKTHPVLGSNISHKKVR 157
>pdb|3SHS|A Chain A, Three N-Terminal Domains Of The Bacteriophage Rb49 Highly
Immunogenic Outer Capsid Protein (Hoc)
Length = 304
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 50 YKKEEDVVGLT--VINCTFTGTSNGVR-IKTWPDSEDGKASNFTFEDLFMNNVENPIV 104
+ K EDV+ T + FT NGV +K W +SED AS T L NV+ +V
Sbjct: 134 WSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVV 191
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 39 GHGISV-----GSLGKYKKEEDVVGLTVINCTFTGTSNGV 73
GHG V GS K +VVG+ V+NC+ +G+++GV
Sbjct: 71 GHGTHVAGTIGGSTYGVAKNVNVVGVRVLNCSGSGSNSGV 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,125,943
Number of Sequences: 62578
Number of extensions: 258766
Number of successful extensions: 443
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 16
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)