Query 036262
Match_columns 195
No_of_seqs 136 out of 1093
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:58:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03003 Probable polygalactur 100.0 1.6E-47 3.4E-52 336.6 26.2 193 1-195 194-389 (456)
2 PLN02155 polygalacturonase 100.0 1.5E-47 3.2E-52 333.4 25.2 191 1-195 201-392 (394)
3 PLN02793 Probable polygalactur 100.0 5.8E-47 1.2E-51 334.3 25.4 189 2-195 234-423 (443)
4 PLN02188 polygalacturonase/gly 100.0 8.2E-47 1.8E-51 329.9 25.7 193 1-195 211-404 (404)
5 PLN03010 polygalacturonase 100.0 4.5E-46 9.8E-51 325.0 25.6 189 2-195 214-403 (409)
6 PLN02218 polygalacturonase ADP 100.0 4.1E-46 9E-51 327.6 24.4 184 1-195 248-431 (431)
7 PF00295 Glyco_hydro_28: Glyco 100.0 4.5E-41 9.7E-46 287.9 21.6 175 2-184 149-323 (326)
8 COG5434 PGU1 Endopygalactoruna 99.9 1.3E-21 2.9E-26 175.1 11.5 101 1-106 293-405 (542)
9 PLN02218 polygalacturonase ADP 99.6 7.2E-14 1.6E-18 123.6 20.0 145 2-167 222-384 (431)
10 PF00295 Glyco_hydro_28: Glyco 99.6 1.6E-13 3.4E-18 117.8 20.3 145 2-167 122-284 (326)
11 PLN02155 polygalacturonase 99.6 3.2E-13 7E-18 118.3 19.7 146 2-167 175-339 (394)
12 PLN02793 Probable polygalactur 99.6 4.7E-13 1E-17 118.9 20.3 144 2-166 207-369 (443)
13 PLN02188 polygalacturonase/gly 99.5 1E-12 2.3E-17 115.5 20.4 147 2-167 185-350 (404)
14 PLN03003 Probable polygalactur 99.5 1.3E-12 2.8E-17 115.9 20.3 154 2-179 168-342 (456)
15 PLN03010 polygalacturonase 99.5 2.1E-12 4.5E-17 113.6 20.6 154 2-179 187-359 (409)
16 COG5434 PGU1 Endopygalactoruna 99.0 5E-09 1.1E-13 94.7 12.2 122 2-138 268-398 (542)
17 PF03718 Glyco_hydro_49: Glyco 98.8 2.8E-07 6.2E-12 82.5 15.2 143 3-166 379-554 (582)
18 PF12541 DUF3737: Protein of u 97.9 0.00019 4.1E-09 59.4 10.4 32 3-37 18-49 (277)
19 PF03718 Glyco_hydro_49: Glyco 97.7 0.00087 1.9E-08 60.6 12.4 127 28-169 381-518 (582)
20 PF13229 Beta_helix: Right han 97.2 0.0073 1.6E-07 45.0 10.9 86 3-106 8-96 (158)
21 smart00656 Amb_all Amb_all dom 97.1 0.019 4.2E-07 45.7 13.0 96 3-99 39-144 (190)
22 smart00656 Amb_all Amb_all dom 97.0 0.02 4.3E-07 45.6 12.2 68 2-70 67-145 (190)
23 TIGR03805 beta_helix_1 paralle 96.8 0.011 2.4E-07 50.7 9.5 18 58-75 140-157 (314)
24 PF12541 DUF3737: Protein of u 96.8 0.0069 1.5E-07 50.3 7.7 34 56-100 193-226 (277)
25 PF13229 Beta_helix: Right han 96.8 0.012 2.5E-07 43.9 8.4 88 3-107 31-121 (158)
26 TIGR03805 beta_helix_1 paralle 96.6 0.011 2.5E-07 50.6 8.5 87 2-98 114-202 (314)
27 PF12708 Pectate_lyase_3: Pect 96.2 0.11 2.4E-06 41.1 11.5 21 3-23 120-141 (225)
28 COG3866 PelB Pectate lyase [Ca 96.1 0.087 1.9E-06 44.8 10.5 96 3-99 124-229 (345)
29 PF00544 Pec_lyase_C: Pectate 96.0 0.023 5E-07 45.6 6.7 87 2-99 44-158 (200)
30 PF00544 Pec_lyase_C: Pectate 95.9 0.014 3E-07 46.8 4.9 68 2-70 82-159 (200)
31 COG3866 PelB Pectate lyase [Ca 95.3 0.092 2E-06 44.7 7.7 69 2-70 152-230 (345)
32 PF05048 NosD: Periplasmic cop 95.3 1 2.3E-05 36.4 13.9 67 3-79 21-88 (236)
33 PF05048 NosD: Periplasmic cop 94.9 0.45 9.7E-06 38.6 10.5 88 2-107 42-130 (236)
34 PF12708 Pectate_lyase_3: Pect 94.8 0.11 2.5E-06 41.1 6.7 66 20-103 157-224 (225)
35 TIGR03808 RR_plus_rpt_1 twin-a 89.3 16 0.00035 33.0 14.5 41 3-44 114-163 (455)
36 TIGR03808 RR_plus_rpt_1 twin-a 87.6 5.1 0.00011 36.1 9.3 37 2-38 142-200 (455)
37 PRK10123 wcaM putative colanic 86.3 2.2 4.7E-05 36.4 5.9 15 85-99 244-258 (464)
38 PF07602 DUF1565: Protein of u 83.4 22 0.00047 29.6 10.5 71 4-79 97-173 (246)
39 PF09251 PhageP22-tail: Salmon 77.8 37 0.0008 30.7 10.5 68 5-79 265-356 (549)
40 PF01696 Adeno_E1B_55K: Adenov 76.4 17 0.00037 32.2 8.1 43 4-47 121-165 (386)
41 PLN02773 pectinesterase 76.3 48 0.001 28.6 10.7 19 19-37 122-140 (317)
42 PF09251 PhageP22-tail: Salmon 70.1 86 0.0019 28.4 11.7 96 10-108 176-286 (549)
43 smart00710 PbH1 Parallel beta- 69.6 6.7 0.00015 19.3 2.6 10 28-37 3-12 (26)
44 PRK10123 wcaM putative colanic 66.9 28 0.0006 29.9 7.0 67 25-98 299-373 (464)
45 PLN02480 Probable pectinestera 60.6 24 0.00052 30.8 5.7 14 58-71 166-179 (343)
46 PF01696 Adeno_E1B_55K: Adenov 56.2 1.2E+02 0.0026 26.9 9.3 23 19-41 66-93 (386)
47 PF14592 Chondroitinas_B: Chon 56.1 64 0.0014 29.0 7.7 25 84-108 273-297 (425)
48 PF03211 Pectate_lyase: Pectat 55.9 1.1E+02 0.0024 24.9 9.7 40 5-47 62-104 (215)
49 PLN02480 Probable pectinestera 52.4 93 0.002 27.2 8.0 92 3-99 131-252 (343)
50 PLN02773 pectinesterase 47.2 1.9E+02 0.0041 25.0 10.4 83 3-98 129-211 (317)
51 PLN02698 Probable pectinestera 45.2 1.3E+02 0.0028 27.6 8.1 21 18-38 289-309 (497)
52 TIGR03804 para_beta_helix para 43.9 35 0.00076 19.7 3.0 20 5-24 9-28 (44)
53 PRK10531 acyl-CoA thioesterase 41.8 2.6E+02 0.0057 25.2 9.4 41 58-98 239-282 (422)
54 PLN02301 pectinesterase/pectin 41.5 1.7E+02 0.0037 27.3 8.3 20 18-37 342-361 (548)
55 PF01095 Pectinesterase: Pecti 40.5 1E+02 0.0022 26.3 6.3 84 4-99 115-202 (298)
56 PF07602 DUF1565: Protein of u 39.3 1.5E+02 0.0033 24.6 7.0 67 4-76 122-195 (246)
57 PLN02488 probable pectinestera 37.8 2.5E+02 0.0055 25.9 8.7 20 18-37 303-322 (509)
58 PRK10531 acyl-CoA thioesterase 36.5 3.2E+02 0.007 24.6 12.2 86 4-99 206-303 (422)
59 PLN02933 Probable pectinestera 34.8 3.1E+02 0.0068 25.5 8.9 21 18-38 324-344 (530)
60 PLN02468 putative pectinestera 34.1 2.1E+02 0.0046 26.8 7.7 34 4-37 345-383 (565)
61 PLN02497 probable pectinestera 33.6 1.3E+02 0.0027 26.2 5.9 20 19-38 142-161 (331)
62 PLN02416 probable pectinestera 32.5 75 0.0016 29.6 4.5 20 18-37 336-355 (541)
63 PLN02713 Probable pectinestera 32.0 1.2E+02 0.0026 28.3 5.8 35 4-38 340-379 (566)
64 PLN02995 Probable pectinestera 31.3 84 0.0018 29.2 4.7 20 18-37 331-350 (539)
65 PLN02506 putative pectinestera 30.9 86 0.0019 29.1 4.7 21 18-38 338-358 (537)
66 PLN02170 probable pectinestera 30.5 96 0.0021 28.8 4.8 21 18-38 332-352 (529)
67 PLN02682 pectinesterase family 29.7 1.4E+02 0.0029 26.5 5.5 58 3-69 162-229 (369)
68 PLN02176 putative pectinestera 29.3 3E+02 0.0065 24.0 7.5 21 18-38 147-167 (340)
69 PLN02197 pectinesterase 29.1 96 0.0021 29.2 4.7 22 17-38 382-403 (588)
70 PLN02708 Probable pectinestera 28.3 1E+02 0.0022 28.8 4.6 19 19-37 350-368 (553)
71 PLN02217 probable pectinestera 28.1 84 0.0018 30.0 4.1 22 17-38 355-376 (670)
72 PLN02916 pectinesterase family 27.8 1.5E+02 0.0032 27.4 5.6 56 4-69 282-338 (502)
73 PLN03043 Probable pectinestera 27.1 1.3E+02 0.0028 28.0 5.1 34 5-38 314-352 (538)
74 PLN02313 Pectinesterase/pectin 27.1 1.2E+02 0.0027 28.5 5.0 21 18-38 381-401 (587)
75 PLN02197 pectinesterase 26.9 4.5E+02 0.0097 24.8 8.6 40 3-44 391-430 (588)
76 KOG0641 WD40 repeat protein [G 26.6 1.8E+02 0.004 24.2 5.3 49 34-91 94-144 (350)
77 PLN02708 Probable pectinestera 26.5 5.4E+02 0.012 24.1 10.4 85 3-99 357-449 (553)
78 PLN02484 probable pectinestera 25.9 1.3E+02 0.0028 28.3 5.0 20 18-37 379-398 (587)
79 PF01095 Pectinesterase: Pecti 25.9 92 0.002 26.5 3.7 17 58-74 116-132 (298)
80 PLN02468 putative pectinestera 25.3 1.4E+02 0.0031 27.9 5.1 17 58-74 374-390 (565)
81 PLN02176 putative pectinestera 25.1 2E+02 0.0042 25.2 5.6 18 57-74 156-173 (340)
82 PLN02990 Probable pectinestera 25.0 1.4E+02 0.003 28.0 4.9 20 18-37 366-385 (572)
83 PLN02314 pectinesterase 24.6 1.6E+02 0.0035 27.6 5.3 21 18-38 384-404 (586)
84 PLN02201 probable pectinestera 24.2 2.1E+02 0.0045 26.6 5.8 56 4-69 298-354 (520)
85 PLN02745 Putative pectinestera 24.0 1.5E+02 0.0032 28.0 4.9 20 18-37 391-410 (596)
86 PLN02217 probable pectinestera 22.4 4.8E+02 0.01 25.1 8.0 96 3-99 364-486 (670)
87 PLN02671 pectinesterase 22.2 5E+02 0.011 22.9 7.6 76 18-98 177-269 (359)
88 PF04026 SpoVG: SpoVG; InterP 21.8 1.4E+02 0.0031 20.4 3.3 42 42-90 18-61 (84)
89 PLN02665 pectinesterase family 21.4 5.7E+02 0.012 22.6 10.3 22 18-39 178-199 (366)
90 PLN02304 probable pectinestera 20.7 2.6E+02 0.0056 24.9 5.5 58 3-69 161-228 (379)
91 PF05342 Peptidase_M26_N: M26 20.6 58 0.0013 27.1 1.4 17 83-99 211-227 (250)
92 PLN02698 Probable pectinestera 20.3 5.3E+02 0.011 23.8 7.6 41 3-45 297-337 (497)
93 PLN02745 Putative pectinestera 20.2 6.8E+02 0.015 23.7 8.5 41 3-45 399-439 (596)
No 1
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=1.6e-47 Score=336.65 Aligned_cols=193 Identities=39% Similarity=0.684 Sum_probs=173.1
Q ss_pred CccccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecCC
Q 036262 1 GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPD 80 (195)
Q Consensus 1 ~~s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~g 80 (195)
.+|+||+|+||+|++||||||+|+|++||+|+||+|.+||||+|||+|+++..+.|+||+|+||+|.++.+|+|||||.|
T Consensus 194 ~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G 273 (456)
T PLN03003 194 GASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG 273 (456)
T ss_pred cCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC
Confidence 36899999999999999999999999999999999999999999999987666889999999999999999999999998
Q ss_pred CCCCcEEeEEEEeEEEccCCccEEEEeecCCCCC---CCCCCCCceEEEEEEEEeEEEEeccCceEEEEecCCCCEEcEE
Q 036262 81 SEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQ---CNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVE 157 (195)
Q Consensus 81 ~~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~~---~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~~~~p~~ni~ 157 (195)
+ +|+++||+|+||+|+++++||.|+++|.+... |. ..++.+.|+||+|+||+|+.....++.|.|+++.||+||+
T Consensus 274 g-~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~-~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~ 351 (456)
T PLN03003 274 G-SGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKD-RKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIF 351 (456)
T ss_pred C-CeEEEEEEEEeEEecCccceEEEEcccCCCCCCCccc-CCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEE
Confidence 6 79999999999999999999999999975432 22 2345789999999999999887889999999999999999
Q ss_pred EEeEEEEeCCCCCCCCCceeeeeecccccceeeCCCCC
Q 036262 158 IGDINLVYNGIDDKGPAISSCSNVKPTLVGKQIPATCV 195 (195)
Q Consensus 158 ~~nv~i~~~~g~~~~~~~~~C~~~~~~~~~~~~p~~c~ 195 (195)
|+||+|+...++......+.|+|++|...++.+|.+|+
T Consensus 352 l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~ 389 (456)
T PLN03003 352 LRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECL 389 (456)
T ss_pred EEEEEEEecCCCCCCccCcEEeccccccCceECCCCcc
Confidence 99999998742211357899999999999988888996
No 2
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.5e-47 Score=333.44 Aligned_cols=191 Identities=47% Similarity=0.866 Sum_probs=174.4
Q ss_pred CccccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecCC
Q 036262 1 GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPD 80 (195)
Q Consensus 1 ~~s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~g 80 (195)
.+|+||+|+||+|++||||||+|++++||+|+||+|.+||||+|||+|++.+.++|+||+|+||+|.++.+|+|||||.+
T Consensus 201 ~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~ 280 (394)
T PLN02155 201 QFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR 280 (394)
T ss_pred ccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC
Confidence 37999999999999999999999999999999999999999999999988767999999999999999999999999965
Q ss_pred CCCCcEEeEEEEeEEEccCCccEEEEeecCCCCC-CCCCCCCceEEEEEEEEeEEEEeccCceEEEEecCCCCEEcEEEE
Q 036262 81 SEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQ-CNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIG 159 (195)
Q Consensus 81 ~~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~~-~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~~~~p~~ni~~~ 159 (195)
.++|+|+||+|+||+|+++++||.|++.|++... |+ ...+.+.|+||+|+||+++.+...++.|.|.++.||+||+|+
T Consensus 281 ~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~-~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~ 359 (394)
T PLN02155 281 PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCP-NEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQ 359 (394)
T ss_pred CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCc-CCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEE
Confidence 4479999999999999999999999999976432 43 234568999999999999998778899999999999999999
Q ss_pred eEEEEeCCCCCCCCCceeeeeecccccceeeCCCCC
Q 036262 160 DINLVYNGIDDKGPAISSCSNVKPTLVGKQIPATCV 195 (195)
Q Consensus 160 nv~i~~~~g~~~~~~~~~C~~~~~~~~~~~~p~~c~ 195 (195)
||+|+..++. ...+.|+|++|...++++|.+|+
T Consensus 360 nv~i~~~~~~---~~~~~C~n~~G~~~~~~~p~~c~ 392 (394)
T PLN02155 360 DIKLTYNKGT---PATSFCFNAVGKSLGVIQPTSCL 392 (394)
T ss_pred eeEEEecCCC---ccCcEEeccEeEEcccCCccccc
Confidence 9999998664 56899999999999998999996
No 3
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=5.8e-47 Score=334.27 Aligned_cols=189 Identities=42% Similarity=0.770 Sum_probs=173.9
Q ss_pred ccccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecCCC
Q 036262 2 RSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPDS 81 (195)
Q Consensus 2 ~s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~g~ 81 (195)
+|+||+|+||+|++||||||+|++++||+|+||+|.+||||+|||+|++.+.+.|+||+|+||+|.++.+|+|||||.++
T Consensus 234 ~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~ 313 (443)
T PLN02793 234 ASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGG 313 (443)
T ss_pred ccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCC
Confidence 68999999999999999999999999999999999999999999999987778999999999999999999999999986
Q ss_pred CCCcEEeEEEEeEEEccCCccEEEEeecCCCC-CCCCCCCCceEEEEEEEEeEEEEeccCceEEEEecCCCCEEcEEEEe
Q 036262 82 EDGKASNFTFEDLFMNNVENPIVIDQEYCPHN-QCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGD 160 (195)
Q Consensus 82 ~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~-~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~~~~p~~ni~~~n 160 (195)
+|.|+||+|+||+|+++.+||.|+++|.+.. .|. ..++.+.|+||+|+||+++.....++.|.|.++.||+||+|+|
T Consensus 314 -~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~-~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~n 391 (443)
T PLN02793 314 -SGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCA-NQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLED 391 (443)
T ss_pred -CEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCC-CCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEe
Confidence 7999999999999999999999999997633 343 2356789999999999999876778999999999999999999
Q ss_pred EEEEeCCCCCCCCCceeeeeecccccceeeCCCCC
Q 036262 161 INLVYNGIDDKGPAISSCSNVKPTLVGKQIPATCV 195 (195)
Q Consensus 161 v~i~~~~g~~~~~~~~~C~~~~~~~~~~~~p~~c~ 195 (195)
|+|+...|+ ...+.|+|++|...|.+.|.||+
T Consensus 392 I~l~~~~g~---~~~~~C~n~~g~~~~~~~p~~C~ 423 (443)
T PLN02793 392 VQLLSSTGD---FTESFCWEAYGSSSGQVYPPPCF 423 (443)
T ss_pred eEEEecCCC---CCCcEEEccEEeECCeEcCCccc
Confidence 999988765 45689999999999999999996
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=8.2e-47 Score=329.94 Aligned_cols=193 Identities=53% Similarity=0.979 Sum_probs=175.3
Q ss_pred CccccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecCC
Q 036262 1 GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPD 80 (195)
Q Consensus 1 ~~s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~g 80 (195)
.+|+||+|+||+|++||||||+|++++||+|+||+|.++|||+|||+|++.+.++|+||+|+||+|.++.+|+|||||.+
T Consensus 211 ~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g 290 (404)
T PLN02188 211 ERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWAN 290 (404)
T ss_pred eCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecC
Confidence 36899999999999999999999999999999999999999999999988788999999999999999999999999975
Q ss_pred C-CCCcEEeEEEEeEEEccCCccEEEEeecCCCCCCCCCCCCceEEEEEEEEeEEEEeccCceEEEEecCCCCEEcEEEE
Q 036262 81 S-EDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIG 159 (195)
Q Consensus 81 ~-~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~~~~p~~ni~~~ 159 (195)
. .+|.|+||+|+||+|+++++||.|+++|.+...|....++.+.|+||+|+||+++.....++.|.|.++.||+||+|+
T Consensus 291 ~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~ 370 (404)
T PLN02188 291 SPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQ 370 (404)
T ss_pred CCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEE
Confidence 3 258999999999999999999999999987655543335578999999999999997677899999999999999999
Q ss_pred eEEEEeCCCCCCCCCceeeeeecccccceeeCCCCC
Q 036262 160 DINLVYNGIDDKGPAISSCSNVKPTLVGKQIPATCV 195 (195)
Q Consensus 160 nv~i~~~~g~~~~~~~~~C~~~~~~~~~~~~p~~c~ 195 (195)
||+|+.+.|. ....+.|+|++|.+.|+++|.||.
T Consensus 371 nV~i~~~~g~--~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 371 DVHLDLSSGE--GGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred eeEEEecCCC--CCcCceeEcceeEEcccCcCCCCC
Confidence 9999988664 356799999999999999999995
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=4.5e-46 Score=325.05 Aligned_cols=189 Identities=38% Similarity=0.700 Sum_probs=174.8
Q ss_pred ccccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecCCC
Q 036262 2 RSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPDS 81 (195)
Q Consensus 2 ~s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~g~ 81 (195)
+|+||+|+||+|++||||||+|++++|+.|+++.|.++|||+|||+|++.+.+.|+||+|+||+|.++.+|+|||||.++
T Consensus 214 ~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~ 293 (409)
T PLN03010 214 YSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGG 293 (409)
T ss_pred ccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCC
Confidence 68999999999999999999999999999999999999999999998876667899999999999999999999999986
Q ss_pred CCCcEEeEEEEeEEEccCCccEEEEeecCCCCC-CCCCCCCceEEEEEEEEeEEEEeccCceEEEEecCCCCEEcEEEEe
Q 036262 82 EDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQ-CNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGD 160 (195)
Q Consensus 82 ~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~~-~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~~~~p~~ni~~~n 160 (195)
+|.|+||+|+||+|+++++||.|+++|.+... |. .+++.+.|+||+|+||+|+...+.++.|.|++..||+||+|+|
T Consensus 294 -~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~-~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~ 371 (409)
T PLN03010 294 -QGYARNISFENITLINTKNPIIIDQQYIDKGKLDA-TKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDD 371 (409)
T ss_pred -CEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCC-CCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEE
Confidence 79999999999999999999999999987433 43 3467899999999999999887889999999999999999999
Q ss_pred EEEEeCCCCCCCCCceeeeeecccccceeeCCCCC
Q 036262 161 INLVYNGIDDKGPAISSCSNVKPTLVGKQIPATCV 195 (195)
Q Consensus 161 v~i~~~~g~~~~~~~~~C~~~~~~~~~~~~p~~c~ 195 (195)
|+|+.++|. .+.+.|.|+++...++++|.+||
T Consensus 372 v~l~~~~g~---~~~~~C~nv~g~~~~~~~~~~C~ 403 (409)
T PLN03010 372 IDVTMENGE---KPKVECQNVEGESSDTDLMRDCF 403 (409)
T ss_pred EEEEecCCC---ccceEeeCccccccCCCCCCccc
Confidence 999998765 57899999999999999999997
No 6
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=4.1e-46 Score=327.63 Aligned_cols=184 Identities=45% Similarity=0.824 Sum_probs=168.0
Q ss_pred CccccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecCC
Q 036262 1 GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPD 80 (195)
Q Consensus 1 ~~s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~g 80 (195)
.+|+||+|+||+|++||||||||+|++||+|+||+|.+||||+|||||++...+.|+||+|+||+|.++.+|+|||||++
T Consensus 248 ~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G 327 (431)
T PLN02218 248 TNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG 327 (431)
T ss_pred cccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCC
Confidence 36899999999999999999999999999999999999999999999987767899999999999999999999999998
Q ss_pred CCCCcEEeEEEEeEEEccCCccEEEEeecCCCCCCCCCCCCceEEEEEEEEeEEEEeccCceEEEEecCCCCEEcEEEEe
Q 036262 81 SEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGD 160 (195)
Q Consensus 81 ~~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~~~~p~~ni~~~n 160 (195)
+ +|+|+||+|+||+|+++++||.|+++|++...|+ ..++.+.|+||+|+||+++.+...++.|.|.++.||+||+|+|
T Consensus 328 g-~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~-~~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~n 405 (431)
T PLN02218 328 G-SGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCT-SQQSAVQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDN 405 (431)
T ss_pred C-CeEEEEEEEEeEEEEcccccEEEEeeccCCCCCC-CCCCCeEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEe
Confidence 5 7999999999999999999999999998765554 3356789999999999999876788999999999999999999
Q ss_pred EEEEeCCCCCCCCCceeeeeecccccceeeCCCCC
Q 036262 161 INLVYNGIDDKGPAISSCSNVKPTLVGKQIPATCV 195 (195)
Q Consensus 161 v~i~~~~g~~~~~~~~~C~~~~~~~~~~~~p~~c~ 195 (195)
|+|+.. ...|+|+++...|+++| +|.
T Consensus 406 V~i~~~--------~~~c~n~~~~~~~~~~p-~c~ 431 (431)
T PLN02218 406 VNIKGG--------KATCTNANVVDKGAVSP-QCN 431 (431)
T ss_pred EEEECC--------eeeEEEeeEEEcccCCC-CCC
Confidence 999742 24799999999998777 883
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=4.5e-41 Score=287.89 Aligned_cols=175 Identities=43% Similarity=0.764 Sum_probs=155.2
Q ss_pred ccccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecCCC
Q 036262 2 RSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPDS 81 (195)
Q Consensus 2 ~s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~g~ 81 (195)
+|+||+|+||+|+++|||||+|++..||+|+||+|+.+|||+|||++..+....|+||+|+||+|.++.+|++||+++++
T Consensus 149 ~s~nv~I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~ 228 (326)
T PF00295_consen 149 SSKNVTIENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGG 228 (326)
T ss_dssp SEEEEEEESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTT
T ss_pred eeeEEEEEEeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEeccc
Confidence 68999999999999999999999999999999999999999999997544335799999999999999999999999875
Q ss_pred CCCcEEeEEEEeEEEccCCccEEEEeecCCCCCCCCCCCCceEEEEEEEEeEEEEeccCceEEEEecCCCCEEcEEEEeE
Q 036262 82 EDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDI 161 (195)
Q Consensus 82 ~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~~~~p~~ni~~~nv 161 (195)
+|.|+||+||||+|+++.+||.|++.|.+..++.. ++..+.|+||+|+||+++.....++.|.|.++.||+||+|+||
T Consensus 229 -~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~-~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv 306 (326)
T PF00295_consen 229 -GGYVSNITFENITMENVKYPIFIDQDYRDGGPCGK-PPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENV 306 (326)
T ss_dssp -SEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSC-SSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEE
T ss_pred -ceEEeceEEEEEEecCCceEEEEEeccccccccCc-ccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeE
Confidence 79999999999999999999999999988554432 2456799999999999999766799999999999999999999
Q ss_pred EEEeCCCCCCCCCceeeeeeccc
Q 036262 162 NLVYNGIDDKGPAISSCSNVKPT 184 (195)
Q Consensus 162 ~i~~~~g~~~~~~~~~C~~~~~~ 184 (195)
+|+. + ...+.|+|++..
T Consensus 307 ~i~~--g----~~~~~c~nv~~~ 323 (326)
T PF00295_consen 307 NITG--G----KKPAQCKNVPSG 323 (326)
T ss_dssp EEES--S----BSESEEBSCCTT
T ss_pred EEEc--C----CcCeEEECCCCC
Confidence 9999 2 366899999854
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=1.3e-21 Score=175.14 Aligned_cols=101 Identities=34% Similarity=0.600 Sum_probs=94.3
Q ss_pred CccccEEEEeeEEecCCceEEecCC-----------cccEEEEeEEEcCCCc-EEEeecCccCCCCCEEEEEEEeeEEeC
Q 036262 1 GRSNGIEISNSIIATGDDCVSLGDG-----------SQNVLVSDVSCGPGHG-ISVGSLGKYKKEEDVVGLTVINCTFTG 68 (195)
Q Consensus 1 ~~s~nV~I~n~~i~~gDD~iaiksg-----------~~nI~I~nc~~~~g~G-i~iGS~g~~~~~~~i~nI~~~n~~i~~ 68 (195)
++|+||+|++|+|++|||||++|++ ++||+|+||.|..+|| +.+||| +.++|+||++|||.|.+
T Consensus 293 ~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~ 368 (542)
T COG5434 293 GSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDN 368 (542)
T ss_pred ccceeEEEeccEEecCCceEEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeecc
Confidence 5899999999999999999999996 6999999999999997 999999 88999999999999999
Q ss_pred CccceEEEecCCCCCCcEEeEEEEeEEEccCCccEEEE
Q 036262 69 TSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIVID 106 (195)
Q Consensus 69 ~~~gi~iKs~~g~~~G~i~nI~~~ni~~~~~~~~i~i~ 106 (195)
+.+||||||..++ +|.++||+|++++|.++..++.|.
T Consensus 369 ~d~GLRikt~~~~-gG~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 369 TDRGLRIKTNDGR-GGGVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred Ccceeeeeeeccc-ceeEEEEEEecccccCcccceeee
Confidence 9999999999986 799999999999999997655555
No 9
>PLN02218 polygalacturonase ADPG
Probab=99.62 E-value=7.2e-14 Score=123.63 Aligned_cols=145 Identities=21% Similarity=0.292 Sum_probs=115.4
Q ss_pred ccccEEEEeeEEec-----CCceEEecCCcccEEEEeEEEcCCC-cEEEeecCccCCCCCEEEEEEEeeEEeCCccceEE
Q 036262 2 RSNGIEISNSIIAT-----GDDCVSLGDGSQNVLVSDVSCGPGH-GISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRI 75 (195)
Q Consensus 2 ~s~nV~I~n~~i~~-----gDD~iaiksg~~nI~I~nc~~~~g~-Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~i 75 (195)
.|+||+|+|..|.+ .=|+|-+-+ ++||+|+||++..|+ .|+|+|- -+||+|+||++... .|+.|
T Consensus 222 ~~~nV~i~~v~I~a~~~spNTDGIdi~s-s~nV~I~n~~I~tGDDcIaIksg--------s~nI~I~n~~c~~G-HGisI 291 (431)
T PLN02218 222 KCSNVQVSNVVVTAPADSPNTDGIHITN-TQNIRVSNSIIGTGDDCISIESG--------SQNVQINDITCGPG-HGISI 291 (431)
T ss_pred ceeeEEEEEEEEeCCCCCCCCCcEeecc-cceEEEEccEEecCCceEEecCC--------CceEEEEeEEEECC-CCEEE
Confidence 58999999999987 337777744 899999999999766 6999863 47999999999765 68988
Q ss_pred EecCCC-CCCcEEeEEEEeEEEccCCccEEEEeecCCCCCCCCCCCCceEEEEEEEEeEEEEeccCceEEEEec--C---
Q 036262 76 KTWPDS-EDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCS--K--- 149 (195)
Q Consensus 76 Ks~~g~-~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~--~--- 149 (195)
.|.... ..+.|+||+++|+++.+..++++|+.+ ....+.++||+|+||++... ..|+.|... +
T Consensus 292 GS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~----------~Gg~G~v~nI~f~ni~m~~V-~~pI~Idq~Y~~~~~ 360 (431)
T PLN02218 292 GSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTY----------QGGSGTASNIIFQNIQMENV-KNPIIIDQDYCDKSK 360 (431)
T ss_pred CcCCCCCCCceEEEEEEEccEEecCCcceEEeec----------CCCCeEEEEEEEEeEEEEcc-cccEEEEeeccCCCC
Confidence 876421 147899999999999999999999985 23457899999999999987 567777532 1
Q ss_pred --C----CCEEcEEEEeEEEEeCC
Q 036262 150 --E----IPCQNVEIGDINLVYNG 167 (195)
Q Consensus 150 --~----~p~~ni~~~nv~i~~~~ 167 (195)
. ..++||+|+||+.+...
T Consensus 361 ~~~~~s~v~I~nI~~~NI~gtsa~ 384 (431)
T PLN02218 361 CTSQQSAVQVKNVVYRNISGTSAS 384 (431)
T ss_pred CCCCCCCeEEEEEEEEeEEEEecC
Confidence 0 12899999999988754
No 10
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.61 E-value=1.6e-13 Score=117.85 Aligned_cols=145 Identities=24% Similarity=0.324 Sum_probs=114.9
Q ss_pred ccccEEEEeeEEecC-----CceEEecCCcccEEEEeEEEcCCC-cEEEeecCccCCCCCEEEEEEEeeEEeCCccceEE
Q 036262 2 RSNGIEISNSIIATG-----DDCVSLGDGSQNVLVSDVSCGPGH-GISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRI 75 (195)
Q Consensus 2 ~s~nV~I~n~~i~~g-----DD~iaiksg~~nI~I~nc~~~~g~-Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~i 75 (195)
.|+||+|++..|.+. -|+|-+-+ ++||+|+||.+..+. .|+|++- . . ||+++||++.+. .|+.|
T Consensus 122 ~~~nv~i~~i~I~~~~~~~NtDGid~~~-s~nv~I~n~~i~~gDD~Iaiks~----~-~---ni~v~n~~~~~g-hGisi 191 (326)
T PF00295_consen 122 DCDNVTISNITINNPANSPNTDGIDIDS-SKNVTIENCFIDNGDDCIAIKSG----S-G---NILVENCTCSGG-HGISI 191 (326)
T ss_dssp SEEEEEEESEEEEEGGGCTS--SEEEES-EEEEEEESEEEESSSESEEESSE----E-C---EEEEESEEEESS-SEEEE
T ss_pred ccCCeEEcceEEEecCCCCCcceEEEEe-eeEEEEEEeecccccCccccccc----c-c---ceEEEeEEEecc-cccee
Confidence 489999999999874 37787754 899999999998765 6999885 2 2 999999999765 57988
Q ss_pred EecCCC-CCCcEEeEEEEeEEEccCCccEEEEeecCCCCCCCCCCCCceEEEEEEEEeEEEEeccCceEEEEec-C----
Q 036262 76 KTWPDS-EDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCS-K---- 149 (195)
Q Consensus 76 Ks~~g~-~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~-~---- 149 (195)
.+.... ....|+||+|+|+++.+..+++.|+.. ....+.++||+|+||+++... .|+.|.-. .
T Consensus 192 GS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~----------~~~~G~v~nI~f~ni~~~~v~-~pi~i~~~y~~~~~ 260 (326)
T PF00295_consen 192 GSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTW----------PGGGGYVSNITFENITMENVK-YPIFIDQDYRDGGP 260 (326)
T ss_dssp EEESSSSE--EEEEEEEEEEEEESESEEEEEEEE----------TTTSEEEEEEEEEEEEEEEES-EEEEEEEEECTTEE
T ss_pred eeccCCccccEEEeEEEEEEEeeccceEEEEEEe----------cccceEEeceEEEEEEecCCc-eEEEEEeccccccc
Confidence 887542 013699999999999999999999885 234689999999999999874 77777521 1
Q ss_pred -C-----CCEEcEEEEeEEEEeCC
Q 036262 150 -E-----IPCQNVEIGDINLVYNG 167 (195)
Q Consensus 150 -~-----~p~~ni~~~nv~i~~~~ 167 (195)
. .+++||+|+||+.+...
T Consensus 261 ~~~~~~~~~i~nI~~~nitg~~~~ 284 (326)
T PF00295_consen 261 CGKPPSGVSISNITFRNITGTSAG 284 (326)
T ss_dssp SSCSSSSSEEEEEEEEEEEEEEST
T ss_pred cCcccCCceEEEEEEEeeEEEecc
Confidence 1 14899999999998876
No 11
>PLN02155 polygalacturonase
Probab=99.58 E-value=3.2e-13 Score=118.29 Aligned_cols=146 Identities=15% Similarity=0.177 Sum_probs=114.9
Q ss_pred ccccEEEEeeEEecCC-----ceEEecCCcccEEEEeEEEcCCC-cEEEeecCccCCCCCEEEEEEEeeEEeCCccceEE
Q 036262 2 RSNGIEISNSIIATGD-----DCVSLGDGSQNVLVSDVSCGPGH-GISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRI 75 (195)
Q Consensus 2 ~s~nV~I~n~~i~~gD-----D~iaiksg~~nI~I~nc~~~~g~-Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~i 75 (195)
.|+||+|++..|.+.- |+|-+-+ ++||+|+||++..++ .|+|++- -+||+++|+++... .|+.|
T Consensus 175 ~~~nv~i~~v~I~~p~~~~NtDGidi~~-s~nV~I~~~~I~~gDDcIaik~g--------s~nI~I~n~~c~~G-hGisI 244 (394)
T PLN02155 175 GCTNVVVRNVKLVAPGNSPNTDGFHVQF-STGVTFTGSTVQTGDDCVAIGPG--------TRNFLITKLACGPG-HGVSI 244 (394)
T ss_pred CeeeEEEEEEEEECCCCCCCCCcccccc-ceeEEEEeeEEecCCceEEcCCC--------CceEEEEEEEEECC-ceEEe
Confidence 5899999999998732 6677754 899999999999765 6999763 47999999999875 68999
Q ss_pred EecCCC-CCCcEEeEEEEeEEEccCCccEEEEeecCCCCCCCCCCCCceEEEEEEEEeEEEEeccCceEEEEe-c-C--C
Q 036262 76 KTWPDS-EDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVC-S-K--E 150 (195)
Q Consensus 76 Ks~~g~-~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g-~-~--~ 150 (195)
.|.... ..|.|+||+++|+++.+..++++|+.+. ....+.++||+|+||+++.. ..|+.|.- . + .
T Consensus 245 GS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~---------~~~gG~v~nI~f~ni~m~~v-~~pI~i~q~Y~~~~~ 314 (394)
T PLN02155 245 GSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWA---------RPSTGFVRNVFFQDLVMKNV-ENPIIIDQNYCPTHE 314 (394)
T ss_pred ccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEec---------CCCCEEEEEEEEEeEEEcCc-cccEEEEecccCCCC
Confidence 886321 1478999999999999999999999851 12457899999999999987 56777732 1 1 0
Q ss_pred --------CCEEcEEEEeEEEEeCC
Q 036262 151 --------IPCQNVEIGDINLVYNG 167 (195)
Q Consensus 151 --------~p~~ni~~~nv~i~~~~ 167 (195)
-.++||+|+||+-+...
T Consensus 315 ~~~~~~s~v~i~~It~~ni~gt~~~ 339 (394)
T PLN02155 315 GCPNEYSGVKISQVTYKNIQGTSAT 339 (394)
T ss_pred CCcCCCCCeEEEEEEEEeeEEEecC
Confidence 13899999999887763
No 12
>PLN02793 Probable polygalacturonase
Probab=99.57 E-value=4.7e-13 Score=118.89 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=113.4
Q ss_pred ccccEEEEeeEEecC-----CceEEecCCcccEEEEeEEEcCCC-cEEEeecCccCCCCCEEEEEEEeeEEeCCccceEE
Q 036262 2 RSNGIEISNSIIATG-----DDCVSLGDGSQNVLVSDVSCGPGH-GISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRI 75 (195)
Q Consensus 2 ~s~nV~I~n~~i~~g-----DD~iaiksg~~nI~I~nc~~~~g~-Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~i 75 (195)
.|+||+|++..|.+. =|+|-+-+ ++||+|+||++..+. .|+|++- -+||+|+||.+... .||.|
T Consensus 207 ~~~nv~i~~l~I~~p~~spNTDGIdi~~-s~nV~I~n~~I~~gDDcIaik~~--------s~nI~I~n~~c~~G-hGisI 276 (443)
T PLN02793 207 NCRRVTISGLKVIAPATSPNTDGIHISA-SRGVVIKDSIVRTGDDCISIVGN--------SSRIKIRNIACGPG-HGISI 276 (443)
T ss_pred ccCcEEEEEEEEECCCCCCCCCcEeeec-cceEEEEeCEEeCCCCeEEecCC--------cCCEEEEEeEEeCC-ccEEE
Confidence 588999999999873 37777754 899999999999765 6999763 37999999999776 58999
Q ss_pred EecCCC-CCCcEEeEEEEeEEEccCCccEEEEeecCCCCCCCCCCCCceEEEEEEEEeEEEEeccCceEEEEec---CCC
Q 036262 76 KTWPDS-EDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCS---KEI 151 (195)
Q Consensus 76 Ks~~g~-~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~---~~~ 151 (195)
.|.... ..+.|+||+|+|+++.+..++++|+.+ ....+.++||+|+||++... ..|+.|.-. ...
T Consensus 277 GSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~----------~g~~G~v~nItf~ni~m~nv-~~pI~I~q~Y~~~~~ 345 (443)
T PLN02793 277 GSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTW----------QGGSGNASKITFQNIFMENV-SNPIIIDQYYCDSRK 345 (443)
T ss_pred ecccCcCCCCcEEEEEEEccEEeCCCceEEEEEe----------CCCCEEEEEEEEEeEEEecC-CceEEEEeeecCCCC
Confidence 886321 147799999999999999999999985 23356899999999999887 567777431 111
Q ss_pred ---------CEEcEEEEeEEEEeC
Q 036262 152 ---------PCQNVEIGDINLVYN 166 (195)
Q Consensus 152 ---------p~~ni~~~nv~i~~~ 166 (195)
.++||+|+||+-+..
T Consensus 346 ~~~~~ts~v~I~nI~~~nI~Gt~~ 369 (443)
T PLN02793 346 PCANQTSAVKVENISFVHIKGTSA 369 (443)
T ss_pred CCCCCCCCeEEEeEEEEEEEEEEc
Confidence 278999999987764
No 13
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.55 E-value=1e-12 Score=115.48 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=112.9
Q ss_pred ccccEEEEeeEEec-----CCceEEecCCcccEEEEeEEEcCCC-cEEEeecCccCCCCCEEEEEEEeeEEeCCccceEE
Q 036262 2 RSNGIEISNSIIAT-----GDDCVSLGDGSQNVLVSDVSCGPGH-GISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRI 75 (195)
Q Consensus 2 ~s~nV~I~n~~i~~-----gDD~iaiksg~~nI~I~nc~~~~g~-Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~i 75 (195)
.|+||+|++..|.+ .=|+|-+-+ ++||+|+||++..+. +|+|++- -+||+++|+.+... .|+.|
T Consensus 185 ~~~~v~i~~v~I~~~~~spNtDGidi~~-s~nV~I~n~~I~~GDDcIaiksg--------~~nI~I~n~~c~~g-hGisi 254 (404)
T PLN02188 185 ECRNFKGSGLKISAPSDSPNTDGIHIER-SSGVYISDSRIGTGDDCISIGQG--------NSQVTITRIRCGPG-HGISV 254 (404)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeeeC-cccEEEEeeEEeCCCcEEEEccC--------CccEEEEEEEEcCC-CcEEe
Confidence 58899999999987 236777755 899999999999765 6999873 25899999999655 68888
Q ss_pred EecCC-CCCCcEEeEEEEeEEEccCCccEEEEeecCCCCCCCCCCCCceEEEEEEEEeEEEEeccCceEEEEe-c-----
Q 036262 76 KTWPD-SEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVC-S----- 148 (195)
Q Consensus 76 Ks~~g-~~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g-~----- 148 (195)
.|-.. ...+.|+||+|+|+++.+..++++|+.+... ...+.++||+|+||++... ..|+.|.- .
T Consensus 255 GSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~--------~~~G~v~nI~f~ni~m~~v-~~pI~i~~~Y~~~~~ 325 (404)
T PLN02188 255 GSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANS--------PGKSAATNMTFENIVMNNV-TNPIIIDQKYCPFYS 325 (404)
T ss_pred CCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCC--------CCceEEEEEEEEeEEecCc-cceEEEEccccCCCC
Confidence 77321 1136699999999999999999999985211 2346899999999999886 56777642 1
Q ss_pred --C----CCCEEcEEEEeEEEEeCC
Q 036262 149 --K----EIPCQNVEIGDINLVYNG 167 (195)
Q Consensus 149 --~----~~p~~ni~~~nv~i~~~~ 167 (195)
+ ...++||+|+||+-+...
T Consensus 326 ~~~~~~s~v~I~nIt~~nI~gt~~~ 350 (404)
T PLN02188 326 CESKYPSGVTLSDIYFKNIRGTSSS 350 (404)
T ss_pred CCcCCCCCcEEEeEEEEEEEEEecC
Confidence 1 123899999999987754
No 14
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.54 E-value=1.3e-12 Score=115.93 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=118.0
Q ss_pred ccccEEEEeeEEecCC-----ceEEecCCcccEEEEeEEEcCCC-cEEEeecCccCCCCCEEEEEEEeeEEeCCccceEE
Q 036262 2 RSNGIEISNSIIATGD-----DCVSLGDGSQNVLVSDVSCGPGH-GISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRI 75 (195)
Q Consensus 2 ~s~nV~I~n~~i~~gD-----D~iaiksg~~nI~I~nc~~~~g~-Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~i 75 (195)
.|+||+|++..|.+.. |+|-+-+ ++||+|+||.+..++ .|+|++- -+||+++||++... .||.|
T Consensus 168 ~c~nV~i~~l~I~ap~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIaiksg--------s~NI~I~n~~c~~G-HGISI 237 (456)
T PLN03003 168 ECNYVTISSLRINAPESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIAINSG--------TSNIHISGIDCGPG-HGISI 237 (456)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeecC-cceEEEEecEEecCCCeEEeCCC--------CccEEEEeeEEECC-CCeEE
Confidence 5899999999998842 6777744 899999999999765 6999863 47999999999765 69999
Q ss_pred EecCCC-CCCcEEeEEEEeEEEccCCccEEEEeecCCCCCCCCCCCCceEEEEEEEEeEEEEeccCceEEEEec-----C
Q 036262 76 KTWPDS-EDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCS-----K 149 (195)
Q Consensus 76 Ks~~g~-~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~-----~ 149 (195)
.|-... ..+.|+||+++|+++.+..++++|+.+ ....+.++||+|+||++... ..|+.|... +
T Consensus 238 GSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~----------~Gg~G~v~nItf~nI~m~nV-~~pI~Idq~Y~~~~~ 306 (456)
T PLN03003 238 GSLGKDGETATVENVCVQNCNFRGTMNGARIKTW----------QGGSGYARMITFNGITLDNV-ENPIIIDQFYNGGDS 306 (456)
T ss_pred eeccCCCCcceEEEEEEEeeEEECCCcEEEEEEe----------CCCCeEEEEEEEEeEEecCc-cceEEEEcccCCCCC
Confidence 886431 136799999999999999999999986 12356899999999999887 567777431 0
Q ss_pred -------C--CCEEcEEEEeEEEEeCCCCCCCCCceeee
Q 036262 150 -------E--IPCQNVEIGDINLVYNGIDDKGPAISSCS 179 (195)
Q Consensus 150 -------~--~p~~ni~~~nv~i~~~~g~~~~~~~~~C~ 179 (195)
. ..++||+|+||+-+..... +..+.|.
T Consensus 307 ~~~~~~~~s~v~IsnI~f~NI~GTs~~~~---ai~l~Cs 342 (456)
T PLN03003 307 DNAKDRKSSAVEVSKVVFSNFIGTSKSEY---GVDFRCS 342 (456)
T ss_pred CCcccCCCCCcEEEeEEEEeEEEEeCccc---eEEEEeC
Confidence 0 1378999999987765432 3445454
No 15
>PLN03010 polygalacturonase
Probab=99.53 E-value=2.1e-12 Score=113.57 Aligned_cols=154 Identities=18% Similarity=0.180 Sum_probs=114.7
Q ss_pred ccccEEEEeeEEecC-----CceEEecCCcccEEEEeEEEcCCC-cEEEeecCccCCCCCEEEEEEEeeEEeCCccceEE
Q 036262 2 RSNGIEISNSIIATG-----DDCVSLGDGSQNVLVSDVSCGPGH-GISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRI 75 (195)
Q Consensus 2 ~s~nV~I~n~~i~~g-----DD~iaiksg~~nI~I~nc~~~~g~-Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~i 75 (195)
.|+||+|++..|.+- =|+|-+-+ ++||+|+||++..+. .|+|++- -.++.|+++..... .||.|
T Consensus 187 ~~~nv~i~~i~I~a~~~s~NTDGiDi~~-s~nV~I~n~~I~~gDDcIaiksg--------s~ni~I~~~~C~~g-HGisI 256 (409)
T PLN03010 187 TCNYVAISKINILAPETSPNTDGIDISY-STNINIFDSTIQTGDDCIAINSG--------SSNINITQINCGPG-HGISV 256 (409)
T ss_pred ccccEEEEEEEEeCCCCCCCCCceeeec-cceEEEEeeEEecCCCeEEecCC--------CCcEEEEEEEeECc-CCEEE
Confidence 588999999999873 36666644 889999999999765 6999874 12456666666554 58999
Q ss_pred EecCCC-CCCcEEeEEEEeEEEccCCccEEEEeecCCCCCCCCCCCCceEEEEEEEEeEEEEeccCceEEEEec---CCC
Q 036262 76 KTWPDS-EDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCS---KEI 151 (195)
Q Consensus 76 Ks~~g~-~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~---~~~ 151 (195)
.|.... ....|+||+|+|+++.+..++++|+.. ....+.++||+|+||++... ..|+.|.-. ...
T Consensus 257 GS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~----------~G~~G~v~nItf~nI~m~~v-~~pI~I~q~Y~~~~~ 325 (409)
T PLN03010 257 GSLGADGANAKVSDVHVTHCTFNQTTNGARIKTW----------QGGQGYARNISFENITLINT-KNPIIIDQQYIDKGK 325 (409)
T ss_pred ccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEe----------cCCCEEEEEeEEEeEEEecC-CccEEEEeeccCCCC
Confidence 886431 135699999999999999999999986 23357899999999999986 677777431 111
Q ss_pred ---------CEEcEEEEeEEEEeCCCCCCCCCceeee
Q 036262 152 ---------PCQNVEIGDINLVYNGIDDKGPAISSCS 179 (195)
Q Consensus 152 ---------p~~ni~~~nv~i~~~~g~~~~~~~~~C~ 179 (195)
+++||+|+|++-+..... +..+.|+
T Consensus 326 ~~~~~~s~v~Isdi~~~ni~GT~~~~~---~i~l~Cs 359 (409)
T PLN03010 326 LDATKDSAVAISNVKYVGFRGTTSNEN---AITLKCS 359 (409)
T ss_pred CCCCCCCceEEEeEEEEeeEEEeCCCc---cEEEEeC
Confidence 378999999988866442 5566664
No 16
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.00 E-value=5e-09 Score=94.67 Aligned_cols=122 Identities=19% Similarity=0.257 Sum_probs=98.5
Q ss_pred ccccEEEEeeEEecCCc----eEEecCCcccEEEEeEEEcCCC-cEEEeecCccCC----CCCEEEEEEEeeEEeCCccc
Q 036262 2 RSNGIEISNSIIATGDD----CVSLGDGSQNVLVSDVSCGPGH-GISVGSLGKYKK----EEDVVGLTVINCTFTGTSNG 72 (195)
Q Consensus 2 ~s~nV~I~n~~i~~gDD----~iaiksg~~nI~I~nc~~~~g~-Gi~iGS~g~~~~----~~~i~nI~~~n~~i~~~~~g 72 (195)
-|+|++++|..|.+.++ ++.+.+ |+|++|++|+|..+. .|.+.|- +... -+.-+||+|+||.|...+.+
T Consensus 268 ~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~I~iksg-~~~~~~~~~~~~~~i~i~~c~~~~ghG~ 345 (542)
T COG5434 268 DCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDCIAIKSG-AGLDGKKGYGPSRNIVIRNCYFSSGHGG 345 (542)
T ss_pred cccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCceEEeecc-cCCcccccccccccEEEecceecccccc
Confidence 37888888888888766 666655 999999999999754 5888884 3222 13458999999999988888
Q ss_pred eEEEecCCCCCCcEEeEEEEeEEEccCCccEEEEeecCCCCCCCCCCCCceEEEEEEEEeEEEEec
Q 036262 73 VRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSL 138 (195)
Q Consensus 73 i~iKs~~g~~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ni~~~~~ 138 (195)
+-+.++- +|-++||++||..|.+..++|.|... ...++.++||+|+++++...
T Consensus 346 ~v~Gse~---~ggv~ni~ved~~~~~~d~GLRikt~----------~~~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 346 LVLGSEM---GGGVQNITVEDCVMDNTDRGLRIKTN----------DGRGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred eEeeeec---CCceeEEEEEeeeeccCcceeeeeee----------cccceeEEEEEEecccccCc
Confidence 8888987 48899999999999998899999986 23457899999999887654
No 17
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.78 E-value=2.8e-07 Score=82.45 Aligned_cols=143 Identities=17% Similarity=0.174 Sum_probs=81.9
Q ss_pred cccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCC-c--EEEeecCccCCCCCEEEEEEEeeEEeCCc---------
Q 036262 3 SNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGH-G--ISVGSLGKYKKEEDVVGLTVINCTFTGTS--------- 70 (195)
Q Consensus 3 s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~-G--i~iGS~g~~~~~~~i~nI~~~n~~i~~~~--------- 70 (195)
++|=+|+|||+++.||+|-+-- .++.|+||++|..+ | +-+|-. ...++||.|+|+.+..++
T Consensus 379 y~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~~~~~~n 451 (582)
T PF03718_consen 379 YPNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIWHNNYVN 451 (582)
T ss_dssp -TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---SSGGCTTT
T ss_pred cCCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeeecccCCCC
Confidence 4667899999999999996653 69999999999633 3 778764 567999999999999873
Q ss_pred cceEEEe--cCCC-------CCCcEEeEEEEeEEEccCC-ccEEEEeecCCCCCCCCCCCCceEEEEEEEEeEEEE----
Q 036262 71 NGVRIKT--WPDS-------EDGKASNFTFEDLFMNNVE-NPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGT---- 136 (195)
Q Consensus 71 ~gi~iKs--~~g~-------~~G~i~nI~~~ni~~~~~~-~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ni~~~---- 136 (195)
.+|.--+ +.+. +.-.||+++|+|+++++.- ..+.|.+. ...+|+.++|+...
T Consensus 452 ~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~pl--------------qn~~nl~ikN~~~~~w~~ 517 (582)
T PF03718_consen 452 TAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPL--------------QNYDNLVIKNVHFESWNG 517 (582)
T ss_dssp -ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--S--------------EEEEEEEEEEEEECEET-
T ss_pred ceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeec--------------CCCcceEEEEeecccccC
Confidence 2443332 2110 1236899999999999864 45666552 23455555555543
Q ss_pred -eccCceEEEEec------CCCCEEcEEEEeEEEEeC
Q 036262 137 -SLTKEAVRIVCS------KEIPCQNVEIGDINLVYN 166 (195)
Q Consensus 137 -~~~~~~~~i~g~------~~~p~~ni~~~nv~i~~~ 166 (195)
.-......+... .+.+..+|.|+|.+|.++
T Consensus 518 ~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 518 LDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTE
T ss_pred cccccceeeccccccccccccccccceEEEeEEECCE
Confidence 111111111111 122478899999888543
No 18
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=97.86 E-value=0.00019 Score=59.39 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=24.9
Q ss_pred cccEEEEeeEEecCCceEEecCCcccEEEEeEEEc
Q 036262 3 SNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCG 37 (195)
Q Consensus 3 s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~ 37 (195)
.+|+.|+||.|.. .=-++|- ++||.+.||.|.
T Consensus 18 ~~d~~l~~~~f~d--GES~LKe-s~nI~~~~~~F~ 49 (277)
T PF12541_consen 18 SHDLRLENCTFAD--GESPLKE-SRNIELKNCIFK 49 (277)
T ss_pred cCCCEEEeeEEeC--CCccccc-ccceEEECCEEe
Confidence 5789999999994 4445666 788888888875
No 19
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=97.67 E-value=0.00087 Score=60.56 Aligned_cols=127 Identities=17% Similarity=0.117 Sum_probs=71.0
Q ss_pred cEEEEeEEEcC-CCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecCCCCCCcEEeEEEEeEEEccCC------
Q 036262 28 NVLVSDVSCGP-GHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVE------ 100 (195)
Q Consensus 28 nI~I~nc~~~~-g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~g~~~G~i~nI~~~ni~~~~~~------ 100 (195)
|=+|+||-++. ..+|++ .-+++.++||++....+|--|..-+. +..++||.|+|+.+-..+
T Consensus 381 nS~i~dcF~h~nDD~iKl----------YhS~v~v~~~ViWk~~Ngpiiq~GW~--pr~isnv~veni~IIh~r~~~~~~ 448 (582)
T PF03718_consen 381 NSTIRDCFIHVNDDAIKL----------YHSNVSVSNTVIWKNENGPIIQWGWT--PRNISNVSVENIDIIHNRWIWHNN 448 (582)
T ss_dssp T-EEEEEEEEESS-SEE------------STTEEEEEEEEEE-SSS-SEE--CS-----EEEEEEEEEEEEE---SSGGC
T ss_pred CCeeeeeEEEecCchhhe----------eecCcceeeeEEEecCCCCeEEeecc--ccccCceEEeeeEEEeeeeecccC
Confidence 44566666652 334544 22577888888888777755654333 477999999999986421
Q ss_pred ---ccEE-EEeecCCCCCCCCCCCCceEEEEEEEEeEEEEeccCceEEEEecCCCCEEcEEEEeEEEEeCCCC
Q 036262 101 ---NPIV-IDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGID 169 (195)
Q Consensus 101 ---~~i~-i~~~y~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~~~~p~~ni~~~nv~i~~~~g~ 169 (195)
.+|+ -...|.+..... ...+...|++++|+|++.++.....+.|.-. ..-.|+.++|+++..-.+.
T Consensus 449 ~~n~~I~~ss~~y~~~~s~~-~adp~~ti~~~~~~nv~~EG~~~~l~ri~pl--qn~~nl~ikN~~~~~w~~~ 518 (582)
T PF03718_consen 449 YVNTAILGSSPFYDDMASTK-TADPSTTIRNMTFSNVRCEGMCPCLFRIYPL--QNYDNLVIKNVHFESWNGL 518 (582)
T ss_dssp TTT-ECEEE--BTTS-SSS---BEEEEEEEEEEEEEEEEECCE-ECEEE--S--EEEEEEEEEEEEECEET-C
T ss_pred CCCceeEecccccccccCCC-CCCcccceeeEEEEeEEEecccceeEEEeec--CCCcceEEEEeecccccCc
Confidence 2233 234564433211 2234568999999999999876666777622 2246688899988755544
No 20
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.21 E-value=0.0073 Score=44.97 Aligned_cols=86 Identities=26% Similarity=0.406 Sum_probs=46.5
Q ss_pred cccEEEEeeEEec-CCceEEecCCcccEEEEeEEEcC-CCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecCC
Q 036262 3 SNGIEISNSIIAT-GDDCVSLGDGSQNVLVSDVSCGP-GHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPD 80 (195)
Q Consensus 3 s~nV~I~n~~i~~-gDD~iaiksg~~nI~I~nc~~~~-g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~g 80 (195)
+.+++|++|.|.. +.++|.+-. ...++|+||++.. ..||.+... .+++++|+++.+...++.+. ..
T Consensus 8 ~~~~~i~~~~i~~~~~~gi~~~~-~~~~~i~n~~i~~~~~gi~~~~~---------~~~~i~~~~~~~~~~~i~~~--~~ 75 (158)
T PF13229_consen 8 GSNVTIRNCTISNNGGDGIHVSG-SSNITIENCTISNGGYGIYVSGG---------SNVTISNNTISDNGSGIYVS--GS 75 (158)
T ss_dssp CEC-EEESEEEESSSSECEEE-S-SCESEEES-EEESSTTSEEEECC---------ES-EEES-EEES-SEEEECC--S-
T ss_pred CcCeEEeeeEEEeCCCeEEEEEc-CCCeEEECeEEECCCcEEEEecC---------CCeEEECeEEEEccceEEEE--ec
Confidence 4668888888887 677888866 4457888888875 456766431 66777777777665343322 21
Q ss_pred CCCCcEEeEEEEeEEEccCCc-cEEEE
Q 036262 81 SEDGKASNFTFEDLFMNNVEN-PIVID 106 (195)
Q Consensus 81 ~~~G~i~nI~~~ni~~~~~~~-~i~i~ 106 (195)
.++++++.++.+... +|++.
T Consensus 76 ------~~~~i~~~~i~~~~~~gi~~~ 96 (158)
T PF13229_consen 76 ------SNITIENNRIENNGDYGIYIS 96 (158)
T ss_dssp ------CS-EEES-EEECSSS-SCE-T
T ss_pred ------CCceecCcEEEcCCCccEEEe
Confidence 344555555554433 44443
No 21
>smart00656 Amb_all Amb_all domain.
Probab=97.13 E-value=0.019 Score=45.66 Aligned_cols=96 Identities=20% Similarity=0.187 Sum_probs=61.7
Q ss_pred cccEEEEeeEEecC-------CceEEecCCcccEEEEeEEEcCCCcEEEeecCccC---CCCCEEEEEEEeeEEeCCccc
Q 036262 3 SNGIEISNSIIATG-------DDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYK---KEEDVVGLTVINCTFTGTSNG 72 (195)
Q Consensus 3 s~nV~I~n~~i~~g-------DD~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~---~~~~i~nI~~~n~~i~~~~~g 72 (195)
++||.|+|..|+.. .|+|.+ .+++||.|.+|++..+..+..+...... ......+|++++|.+.+...+
T Consensus 39 ~~NVIirnl~i~~~~~~~~~~~D~i~~-~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~ 117 (190)
T smart00656 39 VSNVIIRNLTIHDPKPVYGSDGDAISI-DGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKV 117 (190)
T ss_pred cceEEEeCCEEECCccCCCCCCCEEEE-eCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEE
Confidence 67999999999974 578888 4589999999999875211111110000 013468899999999888777
Q ss_pred eEEEecCCCCCCcEEeEEEEeEEEccC
Q 036262 73 VRIKTWPDSEDGKASNFTFEDLFMNNV 99 (195)
Q Consensus 73 i~iKs~~g~~~G~i~nI~~~ni~~~~~ 99 (195)
.-+-...........+|||.+-...+.
T Consensus 118 ~liG~~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 118 MLLGHSDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred EEEccCCCccccccceEEEECcEEcCc
Confidence 666554321112245677777666553
No 22
>smart00656 Amb_all Amb_all domain.
Probab=97.04 E-value=0.02 Score=45.62 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=53.2
Q ss_pred ccccEEEEeeEEecC----------CceEEecCCcccEEEEeEEEcCC-CcEEEeecCccCCCCCEEEEEEEeeEEeCCc
Q 036262 2 RSNGIEISNSIIATG----------DDCVSLGDGSQNVLVSDVSCGPG-HGISVGSLGKYKKEEDVVGLTVINCTFTGTS 70 (195)
Q Consensus 2 ~s~nV~I~n~~i~~g----------DD~iaiksg~~nI~I~nc~~~~g-~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~ 70 (195)
.++||+|.+|.|+.+ |..+.+|.++++|+|++|.|... .+.-+|+.-.. +.....+|++.++.+.++.
T Consensus 67 ~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~-~~~~~~~vT~h~N~~~~~~ 145 (190)
T smart00656 67 GSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSD-TDDGKMRVTIAHNYFGNLR 145 (190)
T ss_pred CCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCc-cccccceEEEECcEEcCcc
Confidence 478999999999997 77789999999999999999753 37888874111 1223568999999998753
No 23
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=96.79 E-value=0.011 Score=50.71 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=8.6
Q ss_pred EEEEEeeEEeCCccceEE
Q 036262 58 GLTVINCTFTGTSNGVRI 75 (195)
Q Consensus 58 nI~~~n~~i~~~~~gi~i 75 (195)
+++|+|+++.+...||.+
T Consensus 140 ~~~v~nN~~~~n~~GI~i 157 (314)
T TIGR03805 140 NIVVRNNVAEENVAGIEI 157 (314)
T ss_pred CeEEECCEEccCcceEEE
Confidence 444444444444444444
No 24
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=96.78 E-value=0.0069 Score=50.31 Aligned_cols=34 Identities=32% Similarity=0.505 Sum_probs=17.2
Q ss_pred EEEEEEEeeEEeCCccceEEEecCCCCCCcEEeEEEEeEEEccCC
Q 036262 56 VVGLTVINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVE 100 (195)
Q Consensus 56 i~nI~~~n~~i~~~~~gi~iKs~~g~~~G~i~nI~~~ni~~~~~~ 100 (195)
-+|+++-||+|.+.+ |+ -+++|++.+|.+|.+..
T Consensus 193 SkNltliNC~I~g~Q-pL----------CY~~~L~l~nC~~~~td 226 (277)
T PF12541_consen 193 SKNLTLINCTIEGTQ-PL----------CYCDNLVLENCTMIDTD 226 (277)
T ss_pred cCCeEEEEeEEeccC-cc----------EeecceEEeCcEeecce
Confidence 345555555555443 21 34555555555555443
No 25
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=96.76 E-value=0.012 Score=43.87 Aligned_cols=88 Identities=26% Similarity=0.383 Sum_probs=58.1
Q ss_pred cccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCC-cEEEeecCccCCCCCEEEEEEEeeEEeCCcc-ceEEEecCC
Q 036262 3 SNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGH-GISVGSLGKYKKEEDVVGLTVINCTFTGTSN-GVRIKTWPD 80 (195)
Q Consensus 3 s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~-Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~-gi~iKs~~g 80 (195)
+..++|+||.|..+..++.+... .+++++||++.... |+.+ ..-.++++++|.+.+... ||+++.
T Consensus 31 ~~~~~i~n~~i~~~~~gi~~~~~-~~~~i~~~~~~~~~~~i~~---------~~~~~~~i~~~~i~~~~~~gi~~~~--- 97 (158)
T PF13229_consen 31 SSNITIENCTISNGGYGIYVSGG-SNVTISNNTISDNGSGIYV---------SGSSNITIENNRIENNGDYGIYISN--- 97 (158)
T ss_dssp SCESEEES-EEESSTTSEEEECC-ES-EEES-EEES-SEEEEC---------CS-CS-EEES-EEECSSS-SCE-TC---
T ss_pred CCCeEEECeEEECCCcEEEEecC-CCeEEECeEEEEccceEEE---------EecCCceecCcEEEcCCCccEEEec---
Confidence 44579999999998889998774 78999999998655 4433 255678889999998876 888764
Q ss_pred CCCCcEEeEEEEeEEEccCC-ccEEEEe
Q 036262 81 SEDGKASNFTFEDLFMNNVE-NPIVIDQ 107 (195)
Q Consensus 81 ~~~G~i~nI~~~ni~~~~~~-~~i~i~~ 107 (195)
.-.++++++.++.+.. .++++..
T Consensus 98 ----~~~~~~i~~n~~~~~~~~gi~~~~ 121 (158)
T PF13229_consen 98 ----SSSNVTIENNTIHNNGGSGIYLEG 121 (158)
T ss_dssp ----EECS-EEES-EEECCTTSSCEEEE
T ss_pred ----cCCCEEEEeEEEEeCcceeEEEEC
Confidence 1245777888887765 5777765
No 26
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=96.64 E-value=0.011 Score=50.60 Aligned_cols=87 Identities=21% Similarity=0.291 Sum_probs=53.6
Q ss_pred ccccEEEEeeEEecCCc-eEEecCCcccEEEEeEEEcCC-CcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecC
Q 036262 2 RSNGIEISNSIIATGDD-CVSLGDGSQNVLVSDVSCGPG-HGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWP 79 (195)
Q Consensus 2 ~s~nV~I~n~~i~~gDD-~iaiksg~~nI~I~nc~~~~g-~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~ 79 (195)
.|++++|++|+++...| +|-++. ++|++|+|++++.. .||-+-. ..++.++|..+.+...|+.+-..+
T Consensus 114 ~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi~v~~~p 183 (314)
T TIGR03805 114 ESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADVYNNIATNNTGGILVFDLP 183 (314)
T ss_pred ccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEEECCEEeccceeEEEeecC
Confidence 36677777777776443 566654 66777777777643 3555532 245677777777777788886655
Q ss_pred CCCCCcEEeEEEEeEEEcc
Q 036262 80 DSEDGKASNFTFEDLFMNN 98 (195)
Q Consensus 80 g~~~G~i~nI~~~ni~~~~ 98 (195)
+.+...-+++++++-++.+
T Consensus 184 ~~~~~~s~~~~v~~N~i~~ 202 (314)
T TIGR03805 184 GLPQPGGSNVRVFDNIIFD 202 (314)
T ss_pred CCCcCCccceEEECCEEEC
Confidence 4322233566666655543
No 27
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.23 E-value=0.11 Score=41.12 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=10.1
Q ss_pred cccEEEEeeEEec-CCceEEec
Q 036262 3 SNGIEISNSIIAT-GDDCVSLG 23 (195)
Q Consensus 3 s~nV~I~n~~i~~-gDD~iaik 23 (195)
+++++|+||.+.. +.+++.+.
T Consensus 120 ~~~~~i~nv~~~~~~~~~i~~~ 141 (225)
T PF12708_consen 120 SQNVSISNVRIENSGGDGIYFN 141 (225)
T ss_dssp EEEEEEEEEEEES-SS-SEEEE
T ss_pred CCeEEEEeEEEEccCccEEEEE
Confidence 4556666665554 23444443
No 28
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=96.10 E-value=0.087 Score=44.80 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=66.9
Q ss_pred cccEEEEeeEEecC------CceEEecCCcccEEEEeEEEcCC-CcEEEeecCccC--CCCCEEEEEEEeeEEeCCccce
Q 036262 3 SNGIEISNSIIATG------DDCVSLGDGSQNVLVSDVSCGPG-HGISVGSLGKYK--KEEDVVGLTVINCTFTGTSNGV 73 (195)
Q Consensus 3 s~nV~I~n~~i~~g------DD~iaiksg~~nI~I~nc~~~~g-~Gi~iGS~g~~~--~~~~i~nI~~~n~~i~~~~~gi 73 (195)
.+||.|+|..|.-- +|.|.|-.+.+||.|.+|+|..+ .+ +=++.+-.. ...+-..|+|+++.+.+...+.
T Consensus 124 a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~-~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kss 202 (345)
T COG3866 124 AGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYN-ASGSHGDGLVDIKKDANYITISYNKFHDHDKSS 202 (345)
T ss_pred CCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccc-ccccCCCccEEeccCCcEEEEEeeeeecCCeee
Confidence 57899999988764 49999966688999999999852 11 111111000 0234568999999999999888
Q ss_pred EEEecCCC-CCCcEEeEEEEeEEEccC
Q 036262 74 RIKTWPDS-EDGKASNFTFEDLFMNNV 99 (195)
Q Consensus 74 ~iKs~~g~-~~G~i~nI~~~ni~~~~~ 99 (195)
-+.+.+.. ..+--.+|||.+-..++.
T Consensus 203 l~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 203 LLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred eeccCCcccccCCceeEEEeccccccc
Confidence 87765432 123447899998888875
No 29
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.05 E-value=0.023 Score=45.58 Aligned_cols=87 Identities=22% Similarity=0.339 Sum_probs=56.5
Q ss_pred ccccEEEEeeEEec----------------CCceEEecCCcccEEEEeEEEcCC---------Cc-EEEeecCccCCCCC
Q 036262 2 RSNGIEISNSIIAT----------------GDDCVSLGDGSQNVLVSDVSCGPG---------HG-ISVGSLGKYKKEED 55 (195)
Q Consensus 2 ~s~nV~I~n~~i~~----------------gDD~iaiksg~~nI~I~nc~~~~g---------~G-i~iGS~g~~~~~~~ 55 (195)
.++||.|+|..|+. +.|++.+. +++||.|.+|+|..+ .| +.+. ..
T Consensus 44 ~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~-~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~--------~~ 114 (200)
T PF00544_consen 44 GASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID-NSSNVWIDHCSFSWGNFECNSDSSDGLIDIK--------KG 114 (200)
T ss_dssp SCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-STEEEEEES-EEEETTS-GGGSSSSSSEEEE--------SS
T ss_pred CCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-ecccEEEeccEEeccccccccccCCceEEEE--------eC
Confidence 47899999999997 66999998 577999999999754 34 4542 34
Q ss_pred EEEEEEEeeEEeCCccceEEEecCCC--CCCcEEeEEEEeEEEccC
Q 036262 56 VVGLTVINCTFTGTSNGVRIKTWPDS--EDGKASNFTFEDLFMNNV 99 (195)
Q Consensus 56 i~nI~~~n~~i~~~~~gi~iKs~~g~--~~G~i~nI~~~ni~~~~~ 99 (195)
..+|++++|.+.+...+.-+.+.... ..| .+|||.+-...+.
T Consensus 115 s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~--~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 115 SDNVTISNNIFDNHNKTMLIGSSDSNSTDRG--LRVTFHHNYFANT 158 (200)
T ss_dssp TEEEEEES-EEEEEEETCEESSCTTCGGGTT--EEEEEES-EEEEE
T ss_pred CceEEEEchhccccccccccCCCCCccccCC--ceEEEEeEEECch
Confidence 67999999999987666555443211 123 7777776666553
No 30
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.93 E-value=0.014 Score=46.83 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=50.0
Q ss_pred ccccEEEEeeEEecC---------CceEEecCCcccEEEEeEEEcCC-CcEEEeecCccCCCCCEEEEEEEeeEEeCCc
Q 036262 2 RSNGIEISNSIIATG---------DDCVSLGDGSQNVLVSDVSCGPG-HGISVGSLGKYKKEEDVVGLTVINCTFTGTS 70 (195)
Q Consensus 2 ~s~nV~I~n~~i~~g---------DD~iaiksg~~nI~I~nc~~~~g-~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~ 70 (195)
.++||+|.+|.++.+ |..+.+|.++++|+|++|.|... .+.-+|+......... .+|++..+.+.++.
T Consensus 82 ~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~~ 159 (200)
T PF00544_consen 82 NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANTN 159 (200)
T ss_dssp STEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEEE
T ss_pred ecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECchh
Confidence 367999999999987 77899999999999999999853 3566777522212234 99999999998753
No 31
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=95.33 E-value=0.092 Score=44.67 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=56.0
Q ss_pred ccccEEEEeeEEec---------CCceEEecCCcccEEEEeEEEcC-CCcEEEeecCccCCCCCEEEEEEEeeEEeCCc
Q 036262 2 RSNGIEISNSIIAT---------GDDCVSLGDGSQNVLVSDVSCGP-GHGISVGSLGKYKKEEDVVGLTVINCTFTGTS 70 (195)
Q Consensus 2 ~s~nV~I~n~~i~~---------gDD~iaiksg~~nI~I~nc~~~~-g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~ 70 (195)
.++||+|.+|+|.. +|..+-||-++..|+|+++.|.. ..++-+|+.-......+-.+|++.++.+.+..
T Consensus 152 ~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~ 230 (345)
T COG3866 152 DGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY 230 (345)
T ss_pred CCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccccccc
Confidence 57899999999998 68889999999999999999985 55788988722111255678999999999864
No 32
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=95.29 E-value=1 Score=36.39 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=47.2
Q ss_pred cccEEEEeeEEecCCceEEecCCcccEEEEeEEEcC-CCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecC
Q 036262 3 SNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGP-GHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWP 79 (195)
Q Consensus 3 s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~-g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~ 79 (195)
++++.|++..+....|+|.+.. +.+++|+++++.. .+||.+... . +++++++.+.+...|+++....
T Consensus 21 ~~~~~i~~n~i~~~~~gi~~~~-s~~~~I~~n~i~~~~~GI~~~~s----~-----~~~i~~n~i~~n~~Gi~l~~s~ 88 (236)
T PF05048_consen 21 SSNNSIENNTISNSRDGIYVEN-SDNNTISNNTISNNRYGIHLMGS----S-----NNTIENNTISNNGYGIYLMGSS 88 (236)
T ss_pred CCCCEEEcCEEEeCCCEEEEEE-cCCeEEEeeEEECCCeEEEEEcc----C-----CCEEEeEEEEccCCCEEEEcCC
Confidence 4677888888888888885544 7788898888875 467766443 1 1666777777766787776543
No 33
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=94.87 E-value=0.45 Score=38.57 Aligned_cols=88 Identities=20% Similarity=0.201 Sum_probs=58.6
Q ss_pred ccccEEEEeeEEecCCceEEecCCcccEEEEeEEEcC-CCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecCC
Q 036262 2 RSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGP-GHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPD 80 (195)
Q Consensus 2 ~s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~-g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~g 80 (195)
.+.+++|+++.|.....+|.+.. +++.+|+++++.. ..||.+... . +.++++.++.+...||.+.....
T Consensus 42 ~s~~~~I~~n~i~~~~~GI~~~~-s~~~~i~~n~i~~n~~Gi~l~~s----~-----~~~I~~N~i~~n~~GI~l~~s~~ 111 (236)
T PF05048_consen 42 NSDNNTISNNTISNNRYGIHLMG-SSNNTIENNTISNNGYGIYLMGS----S-----NNTISNNTISNNGYGIYLYGSSN 111 (236)
T ss_pred EcCCeEEEeeEEECCCeEEEEEc-cCCCEEEeEEEEccCCCEEEEcC----C-----CcEEECCEecCCCceEEEeeCCc
Confidence 36788999999999888888866 6678899998874 568877543 1 34777777777777777664321
Q ss_pred CCCCcEEeEEEEeEEEccCCccEEEEe
Q 036262 81 SEDGKASNFTFEDLFMNNVENPIVIDQ 107 (195)
Q Consensus 81 ~~~G~i~nI~~~ni~~~~~~~~i~i~~ 107 (195)
.++++-++.+...+|++..
T Consensus 112 --------~~I~~N~i~~~~~GI~l~~ 130 (236)
T PF05048_consen 112 --------NTISNNTISNNGYGIYLSS 130 (236)
T ss_pred --------eEEECcEEeCCCEEEEEEe
Confidence 2333333344445555554
No 34
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=94.79 E-value=0.11 Score=41.06 Aligned_cols=66 Identities=29% Similarity=0.510 Sum_probs=40.1
Q ss_pred EEecCCcccEEEEeEEEcC-CCcEEEeecCccCCCCCEEEEEEEeeEEeC-CccceEEEecCCCCCCcEEeEEEEeEEEc
Q 036262 20 VSLGDGSQNVLVSDVSCGP-GHGISVGSLGKYKKEEDVVGLTVINCTFTG-TSNGVRIKTWPDSEDGKASNFTFEDLFMN 97 (195)
Q Consensus 20 iaiksg~~nI~I~nc~~~~-g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~-~~~gi~iKs~~g~~~G~i~nI~~~ni~~~ 97 (195)
+.+..+..++.+.||.+.. ..|+..|+ ++++++||.+.+ ...||.+.... ++.++|++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~ 218 (225)
T PF12708_consen 157 IFIDNGSNNVIVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIE 218 (225)
T ss_dssp EEEESCEEEEEEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEE
T ss_pred eeeccceeEEEECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEE
Confidence 3343344556667777764 33543332 688999999888 66788776553 1666666666
Q ss_pred cCCccE
Q 036262 98 NVENPI 103 (195)
Q Consensus 98 ~~~~~i 103 (195)
+...+|
T Consensus 219 ~~~~g~ 224 (225)
T PF12708_consen 219 NCDDGI 224 (225)
T ss_dssp SSSEEE
T ss_pred CCccCc
Confidence 655443
No 35
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=89.35 E-value=16 Score=32.99 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=30.0
Q ss_pred cccEEEEeeEEecC-------CceEEecCCcccEEEEeEEEcCC--CcEEE
Q 036262 3 SNGIEISNSIIATG-------DDCVSLGDGSQNVLVSDVSCGPG--HGISV 44 (195)
Q Consensus 3 s~nV~I~n~~i~~g-------DD~iaiksg~~nI~I~nc~~~~g--~Gi~i 44 (195)
.+||+|+++.|+.. |-.|-+ .++++++|+||++... +||-+
T Consensus 114 A~nVTIsGLtIdGsG~dl~~rdAgI~v-~~a~~v~Iedn~L~gsg~FGI~L 163 (455)
T TIGR03808 114 ADGIGLSGLTLDGGGIPLPQRRGLIHC-QGGRDVRITDCEITGSGGNGIWL 163 (455)
T ss_pred CCCeEEEeeEEEeCCCcccCCCCEEEE-ccCCceEEEeeEEEcCCcceEEE
Confidence 46888888888773 456666 4588999999998753 56655
No 36
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=87.64 E-value=5.1 Score=36.12 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=25.4
Q ss_pred ccccEEEEeeEEecCC-ceEEecCC---------------------cccEEEEeEEEcC
Q 036262 2 RSNGIEISNSIIATGD-DCVSLGDG---------------------SQNVLVSDVSCGP 38 (195)
Q Consensus 2 ~s~nV~I~n~~i~~gD-D~iaiksg---------------------~~nI~I~nc~~~~ 38 (195)
.|++++|++|.|...- -+|-+... +++.+|++.++..
T Consensus 142 ~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g 200 (455)
T TIGR03808 142 GGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIG 200 (455)
T ss_pred cCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEeccCCCEEECCEEEc
Confidence 5789999999998862 45555431 2377777777764
No 37
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=86.27 E-value=2.2 Score=36.45 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=6.8
Q ss_pred cEEeEEEEeEEEccC
Q 036262 85 KASNFTFEDLFMNNV 99 (195)
Q Consensus 85 ~i~nI~~~ni~~~~~ 99 (195)
.++|..+-||+..+.
T Consensus 244 ~vknfvvanitgs~c 258 (464)
T PRK10123 244 AVKNFVVANITGSDC 258 (464)
T ss_pred hhhhEEEEeccCcCh
Confidence 444444444444443
No 38
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=83.36 E-value=22 Score=29.58 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=43.2
Q ss_pred ccEEEEeeEEecCCc----eEEecCCcccEEEEeEEEcC--CCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEe
Q 036262 4 NGIEISNSIIATGDD----CVSLGDGSQNVLVSDVSCGP--GHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKT 77 (195)
Q Consensus 4 ~nV~I~n~~i~~gDD----~iaiksg~~nI~I~nc~~~~--g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs 77 (195)
.+.+|+...|.+.+. +|.+.+. +.+|+||+|.. .+|+.+-... ....+.++.++...+.....|+.+-.
T Consensus 97 ~~~~i~GvtItN~n~~~g~Gi~Iess--~~tI~Nntf~~~~~~GI~v~g~~---~~~~i~~~vI~GN~~~~~~~Gi~i~~ 171 (246)
T PF07602_consen 97 NNATISGVTITNPNIARGTGIWIESS--SPTIANNTFTNNGREGIFVTGTS---ANPGINGNVISGNSIYFNKTGISISD 171 (246)
T ss_pred CCCEEEEEEEEcCCCCcceEEEEecC--CcEEEeeEEECCccccEEEEeee---cCCcccceEeecceEEecCcCeEEEc
Confidence 345566666666543 4555443 77888888864 4466552220 13567777777777777777777764
Q ss_pred cC
Q 036262 78 WP 79 (195)
Q Consensus 78 ~~ 79 (195)
..
T Consensus 172 ~~ 173 (246)
T PF07602_consen 172 NA 173 (246)
T ss_pred cc
Confidence 43
No 39
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=77.82 E-value=37 Score=30.66 Aligned_cols=68 Identities=24% Similarity=0.389 Sum_probs=41.5
Q ss_pred cEEEEee-EEecCCceEEecCC-----------------------cccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEE
Q 036262 5 GIEISNS-IIATGDDCVSLGDG-----------------------SQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLT 60 (195)
Q Consensus 5 nV~I~n~-~i~~gDD~iaiksg-----------------------~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~ 60 (195)
|..+++. .|..--|++-+.+. -.|=.|+|+....++|+.+|-.| ..+.|+||+
T Consensus 265 nLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~DG---~~~yvsni~ 341 (549)
T PF09251_consen 265 NLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMDG---KGGYVSNIT 341 (549)
T ss_dssp S-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEEC---CS-EEEEEE
T ss_pred eEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeecC---CCceEeeEE
Confidence 4455554 35556677777763 15678899999999999887776 457888888
Q ss_pred EEeeEEeCCccceEEEecC
Q 036262 61 VINCTFTGTSNGVRIKTWP 79 (195)
Q Consensus 61 ~~n~~i~~~~~gi~iKs~~ 79 (195)
+++| ...|+.+++..
T Consensus 342 ~~d~----~g~G~~~~~~~ 356 (549)
T PF09251_consen 342 VQDC----AGAGIFIRGTN 356 (549)
T ss_dssp EES-----SSESEEEECCS
T ss_pred eecc----cCCceEEeecC
Confidence 8887 34577777654
No 40
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=76.38 E-value=17 Score=32.21 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=30.7
Q ss_pred ccEEEEeeEEecCC--ceEEecCCcccEEEEeEEEcCCCcEEEeec
Q 036262 4 NGIEISNSIIATGD--DCVSLGDGSQNVLVSDVSCGPGHGISVGSL 47 (195)
Q Consensus 4 ~nV~I~n~~i~~gD--D~iaiksg~~nI~I~nc~~~~g~Gi~iGS~ 47 (195)
.+|++.|+.|...| -++.+-+ ..++++.+|.|.+-+|..+-+-
T Consensus 121 ~~VtF~ni~F~~~~~~~g~~f~~-~t~~~~hgC~F~gf~g~cl~~~ 165 (386)
T PF01696_consen 121 EGVTFVNIRFEGRDTFSGVVFHA-NTNTLFHGCSFFGFHGTCLESW 165 (386)
T ss_pred eeeEEEEEEEecCCccceeEEEe-cceEEEEeeEEecCcceeEEEc
Confidence 47888899888866 2344433 5688899998888777766554
No 41
>PLN02773 pectinesterase
Probab=76.34 E-value=48 Score=28.62 Aligned_cols=19 Identities=5% Similarity=-0.017 Sum_probs=8.7
Q ss_pred eEEecCCcccEEEEeEEEc
Q 036262 19 CVSLGDGSQNVLVSDVSCG 37 (195)
Q Consensus 19 ~iaiksg~~nI~I~nc~~~ 37 (195)
++|+....+.+.+.||.|.
T Consensus 122 AvAl~v~gDr~~f~~c~~~ 140 (317)
T PLN02773 122 AVAIRVTADRCAFYNCRFL 140 (317)
T ss_pred EEEEEecCccEEEEccEee
Confidence 4444444444444444443
No 42
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=70.08 E-value=86 Score=28.42 Aligned_cols=96 Identities=19% Similarity=0.212 Sum_probs=46.6
Q ss_pred eeEEecCCceEEecCCcccEEEEeEEEcCCCc-EEEeecCccCCCCCEEE----------EEEEeeEEeCCccceEEEec
Q 036262 10 NSIIATGDDCVSLGDGSQNVLVSDVSCGPGHG-ISVGSLGKYKKEEDVVG----------LTVINCTFTGTSNGVRIKTW 78 (195)
Q Consensus 10 n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~G-i~iGS~g~~~~~~~i~n----------I~~~n~~i~~~~~gi~iKs~ 78 (195)
+|.+..-|+-++-|+|+ |++||..=.+++| -.||-+-.|+....+.= ==+...+-+... --.+|||
T Consensus 176 ~~k~~~~~~~~g~~~g~--ItFen~s~~wg~GNyvIGGr~~YGS~S~v~FlRNdGG~~hdGGVig~tsyR~G-ESGvKT~ 252 (549)
T PF09251_consen 176 HCKVIDPDNFIGGKDGI--ITFENLSGDWGTGNYVIGGRTNYGSGSGVQFLRNDGGFGHDGGVIGFTSYRAG-ESGVKTY 252 (549)
T ss_dssp CEEEESEECEEEECCES--EEEE-TSSS-B-SEEEESEEEEE-SS-SEEEESBB-TTTT-EEEECEEEES-S-S-SCEE-
T ss_pred eEEEecCCCccCCccce--EEEEeccCcccccceEecceeeccccceEEEEEcCCCccCCCCeEeeeeeccC-CCcceee
Confidence 46666677888888875 9999995556777 78887755443222221 001111111110 0124565
Q ss_pred CCCCC-C--cEEeEEEEeEEEcc-CCccEEEEee
Q 036262 79 PDSED-G--KASNFTFEDLFMNN-VENPIVIDQE 108 (195)
Q Consensus 79 ~g~~~-G--~i~nI~~~ni~~~~-~~~~i~i~~~ 108 (195)
.+.-+ + .--|..|+|+..-. ++-.+.+..+
T Consensus 253 Q~~Vgg~ssRnYnLqF~d~~~i~~~~DG~Dl~aD 286 (549)
T PF09251_consen 253 QGEVGGTSSRNYNLQFRDSVTISPVWDGFDLGAD 286 (549)
T ss_dssp -SEETTEE--EBS-EEEEEEEES-SSESEEE-SS
T ss_pred ecccCccccceeeEEEeccceEEEeecceeccCC
Confidence 43211 2 34478899887643 4557777655
No 43
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=69.64 E-value=6.7 Score=19.28 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=5.4
Q ss_pred cEEEEeEEEc
Q 036262 28 NVLVSDVSCG 37 (195)
Q Consensus 28 nI~I~nc~~~ 37 (195)
+++|++|++.
T Consensus 3 ~~~i~~n~i~ 12 (26)
T smart00710 3 NVTIENNTIR 12 (26)
T ss_pred CEEEECCEEE
Confidence 4555555554
No 44
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=66.92 E-value=28 Score=29.95 Aligned_cols=67 Identities=19% Similarity=0.314 Sum_probs=38.1
Q ss_pred CcccEEEEeEEEcCCCcEEEeec---CccCCCCCEEEEEEEeeEEeCCc-----cceEEEecCCCCCCcEEeEEEEeEEE
Q 036262 25 GSQNVLVSDVSCGPGHGISVGSL---GKYKKEEDVVGLTVINCTFTGTS-----NGVRIKTWPDSEDGKASNFTFEDLFM 96 (195)
Q Consensus 25 g~~nI~I~nc~~~~g~Gi~iGS~---g~~~~~~~i~nI~~~n~~i~~~~-----~gi~iKs~~g~~~G~i~nI~~~ni~~ 96 (195)
||+|..|.|+.+..+.|+-||-- |+|. .--+|....|+.+.++. +||.|.+-. ..+=|-+.|+.|
T Consensus 299 gcdnfvidni~mvnsagmligygvikg~yl--sipqnfkln~i~ldn~~l~yklrgiqissgn-----atsfvaitn~~m 371 (464)
T PRK10123 299 GCDNFVIDNIEMINSAGMLIGYGVIKGKYL--SIPQNFKLNNIQLDNTHLAYKLRGIQISAGN-----AVSFVALTNIEM 371 (464)
T ss_pred cccceEEeccccccccccEEEeeeeeccEe--cccccceeceEeecccccceeeeeeEeccCC-----cceEEEEeeeeh
Confidence 47888888888877777555532 3332 23356677777777664 454443322 234455556655
Q ss_pred cc
Q 036262 97 NN 98 (195)
Q Consensus 97 ~~ 98 (195)
+.
T Consensus 372 kr 373 (464)
T PRK10123 372 KR 373 (464)
T ss_pred hh
Confidence 53
No 45
>PLN02480 Probable pectinesterase
Probab=60.59 E-value=24 Score=30.77 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=7.2
Q ss_pred EEEEEeeEEeCCcc
Q 036262 58 GLTVINCTFTGTSN 71 (195)
Q Consensus 58 nI~~~n~~i~~~~~ 71 (195)
++.|+||.|.+.+.
T Consensus 166 ra~f~~c~f~G~QD 179 (343)
T PLN02480 166 KVAFYHCAFYSTHN 179 (343)
T ss_pred cEEEEeeEEecccc
Confidence 45555555555443
No 46
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=56.17 E-value=1.2e+02 Score=26.94 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=13.6
Q ss_pred eEEecCC-----cccEEEEeEEEcCCCc
Q 036262 19 CVSLGDG-----SQNVLVSDVSCGPGHG 41 (195)
Q Consensus 19 ~iaiksg-----~~nI~I~nc~~~~g~G 41 (195)
=|++.++ .+-|.|+.+-.--|+|
T Consensus 66 KVaL~Pg~~Y~i~~~V~I~~~cYIiGnG 93 (386)
T PF01696_consen 66 KVALRPGAVYVIRKPVNIRSCCYIIGNG 93 (386)
T ss_pred EEEeCCCCEEEEeeeEEecceEEEECCC
Confidence 3677777 4677776653333444
No 47
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=56.06 E-value=64 Score=29.04 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=15.0
Q ss_pred CcEEeEEEEeEEEccCCccEEEEee
Q 036262 84 GKASNFTFEDLFMNNVENPIVIDQE 108 (195)
Q Consensus 84 G~i~nI~~~ni~~~~~~~~i~i~~~ 108 (195)
=.|.|=+|++++-.....|+.+...
T Consensus 273 H~I~nNY~~gl~g~~~~~~~~v~ng 297 (425)
T PF14592_consen 273 HTIYNNYFEGLTGTRFRGALAVMNG 297 (425)
T ss_dssp -EEES-EEEESSB-TTTTSEE-EEE
T ss_pred cEEEcceeeccccceeecceeeccC
Confidence 4678888888877776667765443
No 48
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=55.89 E-value=1.1e+02 Score=24.90 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=28.0
Q ss_pred cEEEEeeEEe-cCCceEEecCCcccEEEEeEEEcC--CCcEEEeec
Q 036262 5 GIEISNSIIA-TGDDCVSLGDGSQNVLVSDVSCGP--GHGISVGSL 47 (195)
Q Consensus 5 nV~I~n~~i~-~gDD~iaiksg~~nI~I~nc~~~~--g~Gi~iGS~ 47 (195)
..+++|..|- .+-|.|-.+. +-+|+|+++.. -++++|.+.
T Consensus 62 GatlkNvIiG~~~~dGIHC~G---~Ctl~NVwwedVcEDA~T~kg~ 104 (215)
T PF03211_consen 62 GATLKNVIIGANQADGIHCKG---SCTLENVWWEDVCEDAATFKGD 104 (215)
T ss_dssp TEEEEEEEETSS-TT-EEEES---CEEEEEEEESS-SSESEEEESS
T ss_pred CCEEEEEEEcCCCcCceEEcC---CEEEEEEEecccceeeeEEcCC
Confidence 3578888884 4447777666 56899999875 568999776
No 49
>PLN02480 Probable pectinesterase
Probab=52.37 E-value=93 Score=27.16 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=52.6
Q ss_pred cccEEEEeeEEecC----------CceEEecCCcccEEEEeEEEcCC-CcEE-------------EeecCccCCC-CCEE
Q 036262 3 SNGIEISNSIIATG----------DDCVSLGDGSQNVLVSDVSCGPG-HGIS-------------VGSLGKYKKE-EDVV 57 (195)
Q Consensus 3 s~nV~I~n~~i~~g----------DD~iaiksg~~nI~I~nc~~~~g-~Gi~-------------iGS~g~~~~~-~~i~ 57 (195)
..+++++|..|.|. +=+||+....+.+.+.||.|.+- .-|- -|+. +. =+--
T Consensus 131 a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~gR~yf~~C~IeG~V----DFIFG~g 206 (343)
T PLN02480 131 APHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYKGRHYYHSCYIQGSI----DFIFGRG 206 (343)
T ss_pred CCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCCCCEEEEeCEEEeee----eEEccce
Confidence 35677777777774 45888888888999999988642 1222 1111 11 0114
Q ss_pred EEEEEeeEEeCCcc-----ceEEEecCCCCCCcEEeEEEEeEEEccC
Q 036262 58 GLTVINCTFTGTSN-----GVRIKTWPDSEDGKASNFTFEDLFMNNV 99 (195)
Q Consensus 58 nI~~~n~~i~~~~~-----gi~iKs~~g~~~G~i~nI~~~ni~~~~~ 99 (195)
...|+||.|..... .=.|-.+... ...-....|.|.++...
T Consensus 207 ~a~fe~C~i~s~~~~~~~~~G~ITA~~r~-~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 207 RSIFHNCEIFVIADRRVKIYGSITAHNRE-SEDNSGFVFIKGKVYGI 252 (343)
T ss_pred eEEEEccEEEEecCCCCCCceEEEcCCCC-CCCCCEEEEECCEEccc
Confidence 66888999885421 1123222111 12223567888888763
No 50
>PLN02773 pectinesterase
Probab=47.22 E-value=1.9e+02 Score=24.99 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=46.1
Q ss_pred cccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecCCCC
Q 036262 3 SNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPDSE 82 (195)
Q Consensus 3 s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~g~~ 82 (195)
++.+.+.||.|...-|.+-.+.+ .-.++||.+.+.--+=+|+- ...|++|.|.....| .|-......
T Consensus 129 gDr~~f~~c~~~G~QDTL~~~~g--r~yf~~c~IeG~VDFIFG~g----------~a~Fe~c~i~s~~~g-~ITA~~r~~ 195 (317)
T PLN02773 129 ADRCAFYNCRFLGWQDTLYLHYG--KQYLRDCYIEGSVDFIFGNS----------TALLEHCHIHCKSAG-FITAQSRKS 195 (317)
T ss_pred CccEEEEccEeecccceeEeCCC--CEEEEeeEEeecccEEeecc----------EEEEEeeEEEEccCc-EEECCCCCC
Confidence 45677888888888888887654 46777777775544555531 246666666543333 222111000
Q ss_pred CCcEEeEEEEeEEEcc
Q 036262 83 DGKASNFTFEDLFMNN 98 (195)
Q Consensus 83 ~G~i~nI~~~ni~~~~ 98 (195)
...-....|.|.+++.
T Consensus 196 ~~~~~GfvF~~c~it~ 211 (317)
T PLN02773 196 SQESTGYVFLRCVITG 211 (317)
T ss_pred CCCCceEEEEccEEec
Confidence 0111235677777665
No 51
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=45.23 E-value=1.3e+02 Score=27.65 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=12.8
Q ss_pred ceEEecCCcccEEEEeEEEcC
Q 036262 18 DCVSLGDGSQNVLVSDVSCGP 38 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~~ 38 (195)
-+||+....+...+.||.|.+
T Consensus 289 QAvAl~v~~D~~~fy~c~~~G 309 (497)
T PLN02698 289 QAIALSITSDHSVLYRCSIAG 309 (497)
T ss_pred ceEEEEecCCcEEEEcceeec
Confidence 466666666666666666653
No 52
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=43.94 E-value=35 Score=19.75 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=10.2
Q ss_pred cEEEEeeEEecCCceEEecC
Q 036262 5 GIEISNSIIATGDDCVSLGD 24 (195)
Q Consensus 5 nV~I~n~~i~~gDD~iaiks 24 (195)
+.+|++..|....|+|.+..
T Consensus 9 ~~~i~~N~i~~~~~GI~~~~ 28 (44)
T TIGR03804 9 NNTLENNTASNNSYGIYLTD 28 (44)
T ss_pred CCEEECcEEeCCCCEEEEEe
Confidence 33455555555555555544
No 53
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=41.84 E-value=2.6e+02 Score=25.17 Aligned_cols=41 Identities=5% Similarity=0.131 Sum_probs=21.9
Q ss_pred EEEEEeeEEeCCccceEEEecCCCCC---CcEEeEEEEeEEEcc
Q 036262 58 GLTVINCTFTGTSNGVRIKTWPDSED---GKASNFTFEDLFMNN 98 (195)
Q Consensus 58 nI~~~n~~i~~~~~gi~iKs~~g~~~---G~i~nI~~~ni~~~~ 98 (195)
.+.|.||.|++.+.-|+..+.....+ .....-+|+|..+++
T Consensus 239 ra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG 282 (422)
T PRK10531 239 KVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEG 282 (422)
T ss_pred cEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEee
Confidence 56777777777666666532221100 122345666666665
No 54
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=41.46 E-value=1.7e+02 Score=27.30 Aligned_cols=20 Identities=10% Similarity=0.227 Sum_probs=9.7
Q ss_pred ceEEecCCcccEEEEeEEEc
Q 036262 18 DCVSLGDGSQNVLVSDVSCG 37 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~ 37 (195)
-+||+....+...+.||.|.
T Consensus 342 QAVAlrv~~D~~~fy~C~~~ 361 (548)
T PLN02301 342 QAVALRVSADQAVINRCRID 361 (548)
T ss_pred ceEEEEecCCcEEEEeeeee
Confidence 34444444445555555544
No 55
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=40.50 E-value=1e+02 Score=26.26 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=34.0
Q ss_pred ccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEEEEeeEEeCCc----cceEEEecC
Q 036262 4 NGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTS----NGVRIKTWP 79 (195)
Q Consensus 4 ~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~----~gi~iKs~~ 79 (195)
+++.+.+|.|...-|.+-.+++ .-.++||.+.+.--+=+|+- ...|+||+|.-.. ....|-...
T Consensus 115 d~~~f~~c~~~g~QDTL~~~~~--r~y~~~c~IeG~vDFIfG~~----------~a~f~~c~i~~~~~~~~~~~~ItA~~ 182 (298)
T PF01095_consen 115 DRAAFYNCRFLGYQDTLYANGG--RQYFKNCYIEGNVDFIFGNG----------TAVFENCTIHSRRPGGGQGGYITAQG 182 (298)
T ss_dssp TSEEEEEEEEE-STT-EEE-SS--EEEEES-EEEESEEEEEESS----------EEEEES-EEEE--SSTSSTEEEEEE-
T ss_pred CcEEEEEeEEccccceeeeccc--eeEEEeeEEEecCcEEECCe----------eEEeeeeEEEEeccccccceeEEeCC
Confidence 3444555555554454444433 23444554443323333321 3457777777432 123332211
Q ss_pred CCCCCcEEeEEEEeEEEccC
Q 036262 80 DSEDGKASNFTFEDLFMNNV 99 (195)
Q Consensus 80 g~~~G~i~nI~~~ni~~~~~ 99 (195)
......-....|.|.++...
T Consensus 183 r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 183 RTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp --CTTSS-EEEEES-EEEES
T ss_pred ccccCCCeEEEEEEeEEecC
Confidence 00012235667888888753
No 56
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=39.26 E-value=1.5e+02 Score=24.61 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=44.1
Q ss_pred ccEEEEeeEEec-CCceEEe-----cCCcccEEEEeEEEcC-CCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEE
Q 036262 4 NGIEISNSIIAT-GDDCVSL-----GDGSQNVLVSDVSCGP-GHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIK 76 (195)
Q Consensus 4 ~nV~I~n~~i~~-gDD~iai-----ksg~~nI~I~nc~~~~-g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iK 76 (195)
.+.+|+||.|.. +-++|.+ ++...++.|++..+.. ..||++-.. ...++| .++|-.|.+...||.+-
T Consensus 122 s~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~-----~~~~~n-~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 122 SSPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDN-----AAPVEN-KIENNIIENNNIGIVAI 195 (246)
T ss_pred CCcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEcc-----cCCccc-eeeccEEEeCCcCeEee
Confidence 378899999887 3556654 4456778888887764 678988544 223333 44666677666687754
No 57
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=37.78 E-value=2.5e+02 Score=25.94 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=11.0
Q ss_pred ceEEecCCcccEEEEeEEEc
Q 036262 18 DCVSLGDGSQNVLVSDVSCG 37 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~ 37 (195)
-+||+....+...+.||.|.
T Consensus 303 QAVALrv~~Dra~Fy~C~f~ 322 (509)
T PLN02488 303 PAVALRVSGDMSVIYRCRIE 322 (509)
T ss_pred ceEEEEecCCcEEEEcceee
Confidence 35555555555555555554
No 58
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=36.50 E-value=3.2e+02 Score=24.63 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=53.0
Q ss_pred ccEEEEeeEEecC---------CceEEecCCcccEEEEeEEEcCC-CcEEEeecCccC--CCCCEEEEEEEeeEEeCCcc
Q 036262 4 NGIEISNSIIATG---------DDCVSLGDGSQNVLVSDVSCGPG-HGISVGSLGKYK--KEEDVVGLTVINCTFTGTSN 71 (195)
Q Consensus 4 ~nV~I~n~~i~~g---------DD~iaiksg~~nI~I~nc~~~~g-~Gi~iGS~g~~~--~~~~i~nI~~~n~~i~~~~~ 71 (195)
+++..+|..|.|. .-+||+....+.+.+.||.|.+- +-|-.++.+... .......-+|+||.|.++-.
T Consensus 206 d~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VD 285 (422)
T PRK10531 206 NGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVD 285 (422)
T ss_pred CCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeeccc
Confidence 4555666666653 24888888888999999999853 346654431000 01234468999999988743
Q ss_pred ceEEEecCCCCCCcEEeEEEEeEEEccC
Q 036262 72 GVRIKTWPDSEDGKASNFTFEDLFMNNV 99 (195)
Q Consensus 72 gi~iKs~~g~~~G~i~nI~~~ni~~~~~ 99 (195)
=|. |. -...|++.++..+
T Consensus 286 FIF---------G~-g~AvFenC~I~s~ 303 (422)
T PRK10531 286 FVF---------GR-GAVVFDNTEFRVV 303 (422)
T ss_pred EEc---------cC-ceEEEEcCEEEEe
Confidence 222 11 2456777777654
No 59
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=34.81 E-value=3.1e+02 Score=25.49 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=12.2
Q ss_pred ceEEecCCcccEEEEeEEEcC
Q 036262 18 DCVSLGDGSQNVLVSDVSCGP 38 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~~ 38 (195)
-+||+....+...+.||.|.+
T Consensus 324 QAVAlrv~~Dra~fy~C~f~G 344 (530)
T PLN02933 324 QAVALRSGSDHSAFYRCEFDG 344 (530)
T ss_pred ceEEEEEcCCcEEEEEeEEEe
Confidence 356666555566666666653
No 60
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=34.08 E-value=2.1e+02 Score=26.79 Aligned_cols=34 Identities=9% Similarity=0.077 Sum_probs=20.2
Q ss_pred ccEEEEeeEEec-----CCceEEecCCcccEEEEeEEEc
Q 036262 4 NGIEISNSIIAT-----GDDCVSLGDGSQNVLVSDVSCG 37 (195)
Q Consensus 4 ~nV~I~n~~i~~-----gDD~iaiksg~~nI~I~nc~~~ 37 (195)
+++..+|..|.| +.-+||+....+...+.||.|.
T Consensus 345 ~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~ 383 (565)
T PLN02468 345 KGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMD 383 (565)
T ss_pred CCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEE
Confidence 344555555544 2346777766666777777664
No 61
>PLN02497 probable pectinesterase
Probab=33.59 E-value=1.3e+02 Score=26.22 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=12.2
Q ss_pred eEEecCCcccEEEEeEEEcC
Q 036262 19 CVSLGDGSQNVLVSDVSCGP 38 (195)
Q Consensus 19 ~iaiksg~~nI~I~nc~~~~ 38 (195)
+||+....+...+.||.|.+
T Consensus 142 AVAl~v~gDr~~fy~C~f~G 161 (331)
T PLN02497 142 AVAAMIGGDKSAFYSCGFAG 161 (331)
T ss_pred eEEEEecCCcEEEEeeEEec
Confidence 56666556666666666653
No 62
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=32.53 E-value=75 Score=29.55 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=9.9
Q ss_pred ceEEecCCcccEEEEeEEEc
Q 036262 18 DCVSLGDGSQNVLVSDVSCG 37 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~ 37 (195)
-+||+....+...+.||.|.
T Consensus 336 QAVAl~v~~D~~~fy~c~~~ 355 (541)
T PLN02416 336 QAVALRVNADLVALYRCTIN 355 (541)
T ss_pred ceEEEEEcCccEEEEcceEe
Confidence 44444444445555555544
No 63
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=32.01 E-value=1.2e+02 Score=28.35 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=20.3
Q ss_pred ccEEEEeeEEecC-----CceEEecCCcccEEEEeEEEcC
Q 036262 4 NGIEISNSIIATG-----DDCVSLGDGSQNVLVSDVSCGP 38 (195)
Q Consensus 4 ~nV~I~n~~i~~g-----DD~iaiksg~~nI~I~nc~~~~ 38 (195)
+++..+|..|.|. .-+||+....+...+.||.|.+
T Consensus 340 ~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G 379 (566)
T PLN02713 340 QNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEA 379 (566)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeecc
Confidence 3444455555542 2466776666667777777654
No 64
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=31.34 E-value=84 Score=29.21 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=10.9
Q ss_pred ceEEecCCcccEEEEeEEEc
Q 036262 18 DCVSLGDGSQNVLVSDVSCG 37 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~ 37 (195)
-+||+....+...+.||.|.
T Consensus 331 QAVAlrv~~Dr~~f~~c~~~ 350 (539)
T PLN02995 331 QAVALRSSSDLSIFYKCSIE 350 (539)
T ss_pred ceEEEEEcCCceeEEcceEe
Confidence 45555555555555555554
No 65
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=30.89 E-value=86 Score=29.12 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=12.9
Q ss_pred ceEEecCCcccEEEEeEEEcC
Q 036262 18 DCVSLGDGSQNVLVSDVSCGP 38 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~~ 38 (195)
-+||+....+...+.||.|.+
T Consensus 338 QAVAl~v~~D~~~fy~C~~~G 358 (537)
T PLN02506 338 QAVALRVDSDQSAFYRCSMEG 358 (537)
T ss_pred ceEEEEecCCcEEEEcceeec
Confidence 466666666666666666653
No 66
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=30.48 E-value=96 Score=28.77 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=11.8
Q ss_pred ceEEecCCcccEEEEeEEEcC
Q 036262 18 DCVSLGDGSQNVLVSDVSCGP 38 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~~ 38 (195)
-+||+....+...+.||.|.+
T Consensus 332 QAVALrv~gDr~~fy~C~f~G 352 (529)
T PLN02170 332 QAVALRVGSDKSVVYRCSVEG 352 (529)
T ss_pred ceEEEEecCCcEEEEeeeEec
Confidence 355555555556666665553
No 67
>PLN02682 pectinesterase family protein
Probab=29.68 E-value=1.4e+02 Score=26.47 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=0.0
Q ss_pred cccEEEEeeEEecCCc----------eEEecCCcccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEEEEeeEEeCC
Q 036262 3 SNGIEISNSIIATGDD----------CVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGT 69 (195)
Q Consensus 3 s~nV~I~n~~i~~gDD----------~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~ 69 (195)
..++..+|..|.|.-. +||+....+...+.||.|.+ .|+.=-...-.-+|+||.|.++
T Consensus 162 a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G---------~QDTLy~~~gRqyf~~C~IeG~ 229 (369)
T PLN02682 162 SPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLG---------AQDTLYDHLGRHYFKDCYIEGS 229 (369)
T ss_pred CCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEec---------cccceEECCCCEEEEeeEEccc
No 68
>PLN02176 putative pectinesterase
Probab=29.33 E-value=3e+02 Score=24.04 Aligned_cols=21 Identities=14% Similarity=-0.007 Sum_probs=15.9
Q ss_pred ceEEecCCcccEEEEeEEEcC
Q 036262 18 DCVSLGDGSQNVLVSDVSCGP 38 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~~ 38 (195)
-+||+....+...+.||.|.+
T Consensus 147 QAVAl~v~gDr~~f~~C~f~G 167 (340)
T PLN02176 147 PAVAARMLGDKYAIIDSSFDG 167 (340)
T ss_pred ceEEEEecCccEEEEccEEec
Confidence 478888777778888887764
No 69
>PLN02197 pectinesterase
Probab=29.09 E-value=96 Score=29.17 Aligned_cols=22 Identities=5% Similarity=0.140 Sum_probs=13.5
Q ss_pred CceEEecCCcccEEEEeEEEcC
Q 036262 17 DDCVSLGDGSQNVLVSDVSCGP 38 (195)
Q Consensus 17 DD~iaiksg~~nI~I~nc~~~~ 38 (195)
.-+||+....+...+.||.|.+
T Consensus 382 ~QAVAlrv~~D~~~fy~C~f~G 403 (588)
T PLN02197 382 HQAVAIRVNGDRAVIFNCRFDG 403 (588)
T ss_pred CceEEEEecCCcEEEEEeEEEe
Confidence 4566666666666666666653
No 70
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=28.29 E-value=1e+02 Score=28.81 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=9.2
Q ss_pred eEEecCCcccEEEEeEEEc
Q 036262 19 CVSLGDGSQNVLVSDVSCG 37 (195)
Q Consensus 19 ~iaiksg~~nI~I~nc~~~ 37 (195)
+||+....+...+.||.|.
T Consensus 350 AVAlrv~~D~~~f~~c~~~ 368 (553)
T PLN02708 350 AVAFRSDSDLSVIENCEFL 368 (553)
T ss_pred eEEEEecCCcEEEEeeeee
Confidence 4444444444555555444
No 71
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=28.06 E-value=84 Score=30.05 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=15.3
Q ss_pred CceEEecCCcccEEEEeEEEcC
Q 036262 17 DDCVSLGDGSQNVLVSDVSCGP 38 (195)
Q Consensus 17 DD~iaiksg~~nI~I~nc~~~~ 38 (195)
.-+||+....+...+.||.|.+
T Consensus 355 ~QAVAlrv~~Dra~fy~C~f~G 376 (670)
T PLN02217 355 HQAVAIRVLSDESIFYNCKFDG 376 (670)
T ss_pred CceEEEEecCCcEEEEcceeee
Confidence 3567777777777777777764
No 72
>PLN02916 pectinesterase family protein
Probab=27.75 E-value=1.5e+02 Score=27.36 Aligned_cols=56 Identities=21% Similarity=0.166 Sum_probs=0.0
Q ss_pred ccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCc-EEEeecCccCCCCCEEEEEEEeeEEeCC
Q 036262 4 NGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHG-ISVGSLGKYKKEEDVVGLTVINCTFTGT 69 (195)
Q Consensus 4 ~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~G-i~iGS~g~~~~~~~i~nI~~~n~~i~~~ 69 (195)
+|++|+|..=..+.-+||+....+...+.+|.|.+-.. |-..+. .-+|+||.|.++
T Consensus 282 ~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~----------Rqyy~~C~I~Gt 338 (502)
T PLN02916 282 RDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL----------RQFYRDCHIYGT 338 (502)
T ss_pred EeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC----------CEEEEecEEecc
No 73
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=27.11 E-value=1.3e+02 Score=27.96 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=18.6
Q ss_pred cEEEEeeEEecC-----CceEEecCCcccEEEEeEEEcC
Q 036262 5 GIEISNSIIATG-----DDCVSLGDGSQNVLVSDVSCGP 38 (195)
Q Consensus 5 nV~I~n~~i~~g-----DD~iaiksg~~nI~I~nc~~~~ 38 (195)
++..+|..|.|. .-+||+....+...+.||.|.+
T Consensus 314 ~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~g 352 (538)
T PLN03043 314 RFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEG 352 (538)
T ss_pred CEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEec
Confidence 344444444442 2466666666666666666653
No 74
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=27.07 E-value=1.2e+02 Score=28.46 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=13.1
Q ss_pred ceEEecCCcccEEEEeEEEcC
Q 036262 18 DCVSLGDGSQNVLVSDVSCGP 38 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~~ 38 (195)
-+||+....+...+.||.|.+
T Consensus 381 QAvAlrv~~D~~~fy~C~~~g 401 (587)
T PLN02313 381 QAVALRVGSDFSAFYQCDMFA 401 (587)
T ss_pred ceEEEEecCCcEEEEeeeEec
Confidence 466666666666666666653
No 75
>PLN02197 pectinesterase
Probab=26.85 E-value=4.5e+02 Score=24.84 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=27.2
Q ss_pred cccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEE
Q 036262 3 SNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISV 44 (195)
Q Consensus 3 s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~i 44 (195)
++...+.+|.|...-|.+-..++ .=+++||++.+.--+=+
T Consensus 391 ~D~~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIF 430 (588)
T PLN02197 391 GDRAVIFNCRFDGYQDTLYVNNG--RQFYRNIVVSGTVDFIF 430 (588)
T ss_pred CCcEEEEEeEEEecCcceEecCC--CEEEEeeEEEecccccc
Confidence 56778889999998888887764 23666666664333333
No 76
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=26.63 E-value=1.8e+02 Score=24.21 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=25.5
Q ss_pred EEEcCCCc--EEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecCCCCCCcEEeEEE
Q 036262 34 VSCGPGHG--ISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPDSEDGKASNFTF 91 (195)
Q Consensus 34 c~~~~g~G--i~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~g~~~G~i~nI~~ 91 (195)
|++|.-.| |+-||. ...|+-+.|.+=+..-+..-+.+-.. .|+||++.|
T Consensus 94 c~~ws~~geliatgsn-----dk~ik~l~fn~dt~~~~g~dle~nmh----dgtirdl~f 144 (350)
T KOG0641|consen 94 CTAWSPCGELIATGSN-----DKTIKVLPFNADTCNATGHDLEFNMH----DGTIRDLAF 144 (350)
T ss_pred EEEecCccCeEEecCC-----CceEEEEecccccccccCcceeeeec----CCceeeeEE
Confidence 67776555 777776 34555555554333222223333333 256666665
No 77
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=26.51 E-value=5.4e+02 Score=24.07 Aligned_cols=85 Identities=12% Similarity=0.183 Sum_probs=54.3
Q ss_pred cccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEEEEeeEEeCCc------cc--eE
Q 036262 3 SNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTS------NG--VR 74 (195)
Q Consensus 3 s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~------~g--i~ 74 (195)
++.+.+.||.|...-|.+-..++ .-++++|.+.+.-.+=+|.- ...|+||.|.--. .| -.
T Consensus 357 ~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtVDFIFG~a----------~avfq~c~i~~~~~~~~~~~~~~~~ 424 (553)
T PLN02708 357 SDLSVIENCEFLGNQDTLYAHSL--RQFYKSCRIQGNVDFIFGNS----------AAVFQDCAILIAPRQLKPEKGENNA 424 (553)
T ss_pred CCcEEEEeeeeeeccccceeCCC--ceEEEeeEEeecCCEEecCc----------eEEEEccEEEEeccccCCCCCCceE
Confidence 56788899999998888888764 45789999987666666542 4678888887321 11 22
Q ss_pred EEecCCCCCCcEEeEEEEeEEEccC
Q 036262 75 IKTWPDSEDGKASNFTFEDLFMNNV 99 (195)
Q Consensus 75 iKs~~g~~~G~i~nI~~~ni~~~~~ 99 (195)
|-.+.......-..+.|.|.++...
T Consensus 425 iTA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 425 VTAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred EEeCCCCCCCCCceEEEEccEEecC
Confidence 3221110123334678888888753
No 78
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=25.92 E-value=1.3e+02 Score=28.28 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=11.1
Q ss_pred ceEEecCCcccEEEEeEEEc
Q 036262 18 DCVSLGDGSQNVLVSDVSCG 37 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~ 37 (195)
-+||+....+...+.||.|.
T Consensus 379 QAvAlrv~~D~~~fy~C~~~ 398 (587)
T PLN02484 379 QAVALRVGADHAVVYRCNII 398 (587)
T ss_pred ceEEEEecCCcEEEEeeeEe
Confidence 35555555555555555554
No 79
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=25.87 E-value=92 Score=26.49 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=7.8
Q ss_pred EEEEEeeEEeCCccceE
Q 036262 58 GLTVINCTFTGTSNGVR 74 (195)
Q Consensus 58 nI~~~n~~i~~~~~gi~ 74 (195)
++.|.||.|.+.+.-|+
T Consensus 116 ~~~f~~c~~~g~QDTL~ 132 (298)
T PF01095_consen 116 RAAFYNCRFLGYQDTLY 132 (298)
T ss_dssp SEEEEEEEEE-STT-EE
T ss_pred cEEEEEeEEccccceee
Confidence 34556666655544443
No 80
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=25.26 E-value=1.4e+02 Score=27.87 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=10.3
Q ss_pred EEEEEeeEEeCCccceE
Q 036262 58 GLTVINCTFTGTSNGVR 74 (195)
Q Consensus 58 nI~~~n~~i~~~~~gi~ 74 (195)
...|.||.|.+.+.-++
T Consensus 374 ~~~fy~c~~~G~QDTLy 390 (565)
T PLN02468 374 LSVFYRCTMDAFQDTLY 390 (565)
T ss_pred cEEEEEeEEEeccchhc
Confidence 35677777777654443
No 81
>PLN02176 putative pectinesterase
Probab=25.05 E-value=2e+02 Score=25.17 Aligned_cols=18 Identities=17% Similarity=0.349 Sum_probs=12.8
Q ss_pred EEEEEEeeEEeCCccceE
Q 036262 57 VGLTVINCTFTGTSNGVR 74 (195)
Q Consensus 57 ~nI~~~n~~i~~~~~gi~ 74 (195)
....|.||.|.+.+.-|+
T Consensus 156 Dr~~f~~C~f~G~QDTLy 173 (340)
T PLN02176 156 DKYAIIDSSFDGFQDTLF 173 (340)
T ss_pred ccEEEEccEEecccceeE
Confidence 467888888887655444
No 82
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=25.00 E-value=1.4e+02 Score=28.04 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=10.4
Q ss_pred ceEEecCCcccEEEEeEEEc
Q 036262 18 DCVSLGDGSQNVLVSDVSCG 37 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~ 37 (195)
-+||+....+...+.||.|.
T Consensus 366 QAVAlrv~~D~~~f~~c~~~ 385 (572)
T PLN02990 366 QAVALRVSADYAVFYNCQID 385 (572)
T ss_pred ceEEEEEcCCcEEEEeeeEe
Confidence 34555554555555555554
No 83
>PLN02314 pectinesterase
Probab=24.64 E-value=1.6e+02 Score=27.64 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=13.0
Q ss_pred ceEEecCCcccEEEEeEEEcC
Q 036262 18 DCVSLGDGSQNVLVSDVSCGP 38 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~~ 38 (195)
-+||+..+.+...+.||.|.+
T Consensus 384 QAvAlrv~~D~~~f~~c~~~G 404 (586)
T PLN02314 384 QAVAFRSGSDMSVFYQCSFDA 404 (586)
T ss_pred ceEEEEecCCcEEEEeeEEEe
Confidence 356666666666666666653
No 84
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=24.19 E-value=2.1e+02 Score=26.59 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred ccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCc-EEEeecCccCCCCCEEEEEEEeeEEeCC
Q 036262 4 NGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHG-ISVGSLGKYKKEEDVVGLTVINCTFTGT 69 (195)
Q Consensus 4 ~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~G-i~iGS~g~~~~~~~i~nI~~~n~~i~~~ 69 (195)
+|++|+|..=..+.-+||+....+...+.||.|.+-.. |-..+. .-+|+||.|.++
T Consensus 298 ~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~----------Rqyy~~C~I~Gt 354 (520)
T PLN02201 298 RDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTM----------RQFYRECRITGT 354 (520)
T ss_pred EeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCC----------CEEEEeeEEeec
No 85
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=24.04 E-value=1.5e+02 Score=27.99 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=11.3
Q ss_pred ceEEecCCcccEEEEeEEEc
Q 036262 18 DCVSLGDGSQNVLVSDVSCG 37 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~ 37 (195)
-+||+....+...+.||.|.
T Consensus 391 QAVAl~v~~Dr~~f~~c~~~ 410 (596)
T PLN02745 391 QAVAIRVQSDRSIFLNCRFE 410 (596)
T ss_pred ceEEEEEcCCcEEEEeeEEe
Confidence 34555555555666666554
No 86
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=22.44 E-value=4.8e+02 Score=25.08 Aligned_cols=96 Identities=11% Similarity=0.149 Sum_probs=50.5
Q ss_pred cccEEEEeeEEecCCceEEecCC------------------cccEEEEeEEEcCCC-----cEEEeecCccCCCCCEEEE
Q 036262 3 SNGIEISNSIIATGDDCVSLGDG------------------SQNVLVSDVSCGPGH-----GISVGSLGKYKKEEDVVGL 59 (195)
Q Consensus 3 s~nV~I~n~~i~~gDD~iaiksg------------------~~nI~I~nc~~~~g~-----Gi~iGS~g~~~~~~~i~nI 59 (195)
++...+.||.|...-|.+-..++ .-..+++||++.... .-.|=-.|+. +...-.-+
T Consensus 364 ~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~I~~r~~~~~~~~~ITAqgr~-~~~~~tGf 442 (670)
T PLN02217 364 SDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLLNQACPITAHGRK-DPRESTGF 442 (670)
T ss_pred CCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEEccEEEEccCCCCCceeEecCCCC-CCCCCceE
Confidence 34555666666665555554442 234667777765211 1111111110 11233468
Q ss_pred EEEeeEEeCCccce----EEEecCCCCCCcEEeEEEEeEEEccC
Q 036262 60 TVINCTFTGTSNGV----RIKTWPDSEDGKASNFTFEDLFMNNV 99 (195)
Q Consensus 60 ~~~n~~i~~~~~gi----~iKs~~g~~~G~i~nI~~~ni~~~~~ 99 (195)
.|.||+|......+ ..+++-|++.+....+.|-+..|.++
T Consensus 443 vf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 443 VLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDF 486 (670)
T ss_pred EEEeeEEecCccccccccccceeeccCCCCCceEEEEecccCCe
Confidence 88888888754211 12445555456667788888877764
No 87
>PLN02671 pectinesterase
Probab=22.17 E-value=5e+02 Score=22.88 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=40.3
Q ss_pred ceEEecCCcccEEEEeEEEcCCC-cEE-------------EeecCccCCC--CCEEEEEEEeeEEeCCcc-ceEEEecCC
Q 036262 18 DCVSLGDGSQNVLVSDVSCGPGH-GIS-------------VGSLGKYKKE--EDVVGLTVINCTFTGTSN-GVRIKTWPD 80 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~~g~-Gi~-------------iGS~g~~~~~--~~i~nI~~~n~~i~~~~~-gi~iKs~~g 80 (195)
-++|+....+...+.||.|.+.. -|- -|+. +. |. -...|+||.|..... .-.|-....
T Consensus 177 QAVALrv~gDra~f~~c~f~G~QDTLy~~~gR~yf~~CyIeG~V----DFIFG~-g~A~Fe~C~I~s~~~~~G~ITA~~r 251 (359)
T PLN02671 177 QAVALRISGDKAFFYKVRVLGAQDTLLDETGSHYFYQCYIQGSV----DFIFGN-AKSLYQDCVIQSTAKRSGAIAAHHR 251 (359)
T ss_pred cEEEEEEcCccEEEEcceEeccccccEeCCCcEEEEecEEEEec----cEEecc-eeEEEeccEEEEecCCCeEEEeecc
Confidence 37888877778888888876422 121 1111 11 11 356788888875321 123322211
Q ss_pred CCCCcEEeEEEEeEEEcc
Q 036262 81 SEDGKASNFTFEDLFMNN 98 (195)
Q Consensus 81 ~~~G~i~nI~~~ni~~~~ 98 (195)
.....-....|.|.++..
T Consensus 252 ~~~~~~~GfvF~~C~itg 269 (359)
T PLN02671 252 DSPTEDTGFSFVNCVING 269 (359)
T ss_pred CCCCCCccEEEEccEEcc
Confidence 001222456888888876
No 88
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=21.83 E-value=1.4e+02 Score=20.43 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=24.0
Q ss_pred EEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEe--cCCCCCCcEEeEE
Q 036262 42 ISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKT--WPDSEDGKASNFT 90 (195)
Q Consensus 42 i~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs--~~g~~~G~i~nI~ 90 (195)
.++.|. +-++ -+.++|+.+....+|+++-. +... .|..++|.
T Consensus 18 ka~asV----~~dd--~f~I~~ikVieg~~GlFVaMPs~k~~-~g~y~Di~ 61 (84)
T PF04026_consen 18 KAFASV----TFDD--CFVIHDIKVIEGEKGLFVAMPSRKSK-DGEYKDIC 61 (84)
T ss_dssp EEEEEE----EETT--TEEEEEEEEEEETTEEEEE--EEE-T-TS-EEESE
T ss_pred EEEEEE----EECC--EEEEEeEEEEECCCCcEEECCCcCCC-CCCEEEEE
Confidence 566665 2222 27788888888888887763 3322 34545544
No 89
>PLN02665 pectinesterase family protein
Probab=21.44 E-value=5.7e+02 Score=22.56 Aligned_cols=22 Identities=5% Similarity=-0.097 Sum_probs=17.3
Q ss_pred ceEEecCCcccEEEEeEEEcCC
Q 036262 18 DCVSLGDGSQNVLVSDVSCGPG 39 (195)
Q Consensus 18 D~iaiksg~~nI~I~nc~~~~g 39 (195)
-+||+....+...+.||.|.+.
T Consensus 178 QAVAl~v~gDka~f~~C~f~G~ 199 (366)
T PLN02665 178 QAVAMRISGDKAAFYNCRFIGF 199 (366)
T ss_pred ceEEEEEcCCcEEEEcceeccc
Confidence 5788877778888899988753
No 90
>PLN02304 probable pectinesterase
Probab=20.65 E-value=2.6e+02 Score=24.86 Aligned_cols=58 Identities=9% Similarity=0.029 Sum_probs=0.0
Q ss_pred cccEEEEeeEEecCCc----------eEEecCCcccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEEEEeeEEeCC
Q 036262 3 SNGIEISNSIIATGDD----------CVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGT 69 (195)
Q Consensus 3 s~nV~I~n~~i~~gDD----------~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~ 69 (195)
.+++..+|..|.|.-+ +||+....+...+.||.|.+ .|+.=-..--.-+|+||.|.++
T Consensus 161 a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G---------~QDTLy~~~gR~Yf~~CyIeG~ 228 (379)
T PLN02304 161 ASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFG---------AQDTLHDDRGRHYFKDCYIQGS 228 (379)
T ss_pred CCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEec---------ccceeEeCCCCEEEEeeEEccc
No 91
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=20.61 E-value=58 Score=27.13 Aligned_cols=17 Identities=12% Similarity=0.302 Sum_probs=13.8
Q ss_pred CCcEEeEEEEeEEEccC
Q 036262 83 DGKASNFTFEDLFMNNV 99 (195)
Q Consensus 83 ~G~i~nI~~~ni~~~~~ 99 (195)
+|.|+|+.|+|+.+..-
T Consensus 211 gatI~nL~l~nv~I~~~ 227 (250)
T PF05342_consen 211 GATIKNLNLKNVNINGP 227 (250)
T ss_pred CCEEEcceeEEeeeecc
Confidence 58899999998888754
No 92
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=20.26 E-value=5.3e+02 Score=23.77 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=24.9
Q ss_pred cccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEEe
Q 036262 3 SNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVG 45 (195)
Q Consensus 3 s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~iG 45 (195)
++.+.+.+|.|...-|.+-..++ .=.++||.+.+.--+=+|
T Consensus 297 ~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIFG 337 (497)
T PLN02698 297 SDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIFG 337 (497)
T ss_pred CCcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEec
Confidence 45677777888777777766654 235666666544334443
No 93
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=20.18 E-value=6.8e+02 Score=23.66 Aligned_cols=41 Identities=10% Similarity=-0.042 Sum_probs=25.8
Q ss_pred cccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEEe
Q 036262 3 SNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVG 45 (195)
Q Consensus 3 s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~iG 45 (195)
++...+.||.|...-|.+-..++ .-+++||++.+.--+=+|
T Consensus 399 ~Dr~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG 439 (596)
T PLN02745 399 SDRSIFLNCRFEGYQDTLYAQTH--RQFYRSCVITGTIDFIFG 439 (596)
T ss_pred CCcEEEEeeEEeecccccccCCC--cEEEEeeEEEeeccEEec
Confidence 45677788888887777766554 346666666654334443
Done!