BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036263
(305 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 346 bits (887), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 170/346 (49%), Positives = 231/346 (66%), Gaps = 56/346 (16%)
Query: 16 PHQQNRNQNLKKRPQIS---IQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMR 72
P+ + RP + + +++ S ID V WTSSI+ HCR+G + EAA EF+RM+
Sbjct: 22 PNSKPNQPTFPSRPHSTKYHLTRSHTHSPIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQ 81
Query: 73 LYGTNPSHITFVTLLSGCADFP--------------------SNNVMVSTALLDMYAKFG 112
+ G P+HITF+TLLS C DFP + NVMV TAL+DMY+K G
Sbjct: 82 IAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCG 141
Query: 113 RMDLATVVFDVM---------------------------------RGCDFWTALLNGFVK 139
++DLA ++FD M R WT+++ GFVK
Sbjct: 142 QLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVK 201
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
+ FE+ALE+FR MQ++GVEPDY+TIISVL CAN+ LG+GLW++R+V KQDFKDN+++
Sbjct: 202 KGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKI 261
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
N+L+D+YSR GCI ARQVF++M KR+LVSWNS+IVGFA+NG EALE+FNLM+K F
Sbjct: 262 SNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGF 321
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D VSFTGALTACSH+GL+++GLQ+FDIMK+ ++SP+IEH+GC+
Sbjct: 322 RPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCL 367
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 21/224 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
+ WTS I + GC +A F M+L G P ++T +++L+ CA+ +
Sbjct: 189 AISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINR 248
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+N+ +S +L+DMY++ G + LA VF+ M R W +++ GF + EE
Sbjct: 249 FVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEE 308
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNVRVCNTLM 204
ALE+F +M+ G PD ++ L C++ + GL + + + + L+
Sbjct: 309 ALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLV 368
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEA 247
D+YSR G +E A V M K V S++ +G VG A
Sbjct: 369 DLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLA 412
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 327 bits (837), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 173/358 (48%), Positives = 224/358 (62%), Gaps = 66/358 (18%)
Query: 1 MNSPAIATILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGC 60
+++P R P PH RN + K P +++D V WTSS++R+CR+G
Sbjct: 26 LSNPTKLNFPRSPNSPH---RNISSKFNP----------NSVDPIVLWTSSLARYCRNGQ 72
Query: 61 ILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------------------NNVMV 100
+ EAA EFTRMRL G P+HITF+TLLS CADFPS +VMV
Sbjct: 73 LSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYGLDTGHVMV 132
Query: 101 STALLDMYAKF-------------------------------GRMDLATVVFDVM--RGC 127
TAL+DMY+K G ++LA +FD M R
Sbjct: 133 GTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDA 192
Query: 128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
WTAL+NG +K Y E+ALE F MQ SGV DY++II+VL CA++ L +GLW+HR+
Sbjct: 193 ISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRF 252
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
V Q+FKDN+++ N+L+D+YSR GCIEFARQVF +M KRTLVSWNSIIVGFAVNGF E+
Sbjct: 253 VMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADES 312
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LE+F MQK FK D VS+TGALTACSHAGL+ GL+ FD MK +++++P+IEH+GCI
Sbjct: 313 LEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCI 370
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 326 bits (835), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 173/358 (48%), Positives = 224/358 (62%), Gaps = 66/358 (18%)
Query: 1 MNSPAIATILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGC 60
+++P R P PH RN + K P +++D V WTSS++R+CR+G
Sbjct: 26 LSNPTKLNFPRSPNSPH---RNISSKFNP----------NSVDPIVLWTSSLARYCRNGQ 72
Query: 61 ILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------------------NNVMV 100
+ EAA EFTRMRL G P+HITF+TLLS CADFPS +VMV
Sbjct: 73 LSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYGLDTGHVMV 132
Query: 101 STALLDMYAKF-------------------------------GRMDLATVVFDVM--RGC 127
TAL+DMY+K G ++LA +FD M R
Sbjct: 133 GTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDA 192
Query: 128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
WTAL+NG +K Y E+ALE F MQ SGV DY++II+VL CA++ L +GLW+HR+
Sbjct: 193 ISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRF 252
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
V Q+FKDN+++ N+L+D+YSR GCIEFARQVF +M KRTLVSWNSIIVGFAVNGF E+
Sbjct: 253 VMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADES 312
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LE+F MQK FK D VS+TGALTACSHAGL+ GL+ FD MK +++++P+IEH+GCI
Sbjct: 313 LEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCI 370
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 163/317 (51%), Positives = 209/317 (65%), Gaps = 54/317 (17%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
D V WT+SI+ +C+SG +++AA +F +MR P+HITF+TLLS CA +PS
Sbjct: 54 DPIVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFG 113
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFD----------------VMR 125
N+VMV TAL+DMYAK GR++ A + FD MR
Sbjct: 114 TAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMR 173
Query: 126 GCDF-----------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F WTAL+ GFVK+DY EEALE FR MQ+SGV PDY+T+I+V
Sbjct: 174 NGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAV 233
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
+ CAN+ TLG+GLW+HR V QDF++NV+V N+L+D+YSR GCI+ ARQVF RM +RTL
Sbjct: 234 IAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTL 293
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
VSWNSIIVGFAVNG EAL YFN MQ+ FK D VS+TGAL ACSHAGLI +GL+ F+
Sbjct: 294 VSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEH 353
Query: 289 MKKIYRVSPQIEHHGCI 305
MK++ R+ P+IEH+GC+
Sbjct: 354 MKRVRRILPRIEHYGCL 370
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 21/234 (8%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ + WT+ I + EA F M+L G P ++T + +++ CA+ +
Sbjct: 189 VKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLW 248
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
NNV VS +L+DMY++ G +DLA VFD M R W +++ GF
Sbjct: 249 VHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGL 308
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNVRVCN 201
+EAL YF MQ G +PD ++ L C++ +G GL + ++ + + +
Sbjct: 309 ADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYG 368
Query: 202 TLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
L+D+YSR G +E A V + M K V S++ G +G A N +
Sbjct: 369 CLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLAENVMNYL 422
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 165/333 (49%), Positives = 208/333 (62%), Gaps = 54/333 (16%)
Query: 26 KKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVT 85
K+ IQ N +ST + TV WTS I+ R+G + EAA EF+ MRL G P+HITF+
Sbjct: 18 KRHANPKIQRLN-QSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIA 76
Query: 86 LLSGCADFPS--------------------NNVMVSTALLDMYAKFGRMDLATVVFDVM- 124
+LSGC DFPS N+VMV TA++ MY+K GR+ A VFD M
Sbjct: 77 ILSGCGDFPSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYME 136
Query: 125 --------------------------------RGCDFWTALLNGFVKRDYFEEALEYFRV 152
R WTA++NGFV + + EEAL +FR
Sbjct: 137 DKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFRE 196
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
MQISGV+PDY+ II+ LN C N+ L GLW+HRYV QDFK+NVRV N+L+D+Y R GC
Sbjct: 197 MQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGC 256
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+EFARQVF +M KRT+VSWNS+IVGFA NG E+L YF MQ+ FK D V+FTGALTA
Sbjct: 257 VEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTA 316
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
CSH GL+E+GL+YF IM YR+SP+IEH+GC+
Sbjct: 317 CSHVGLVEEGLRYFQIMISDYRISPRIEHYGCL 349
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 35/234 (14%)
Query: 32 SIQTNNSKSTIDTT-----VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL 86
S Q +N+ D + WT+ I+ G EA F M++ G P ++ +
Sbjct: 153 SGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAA 212
Query: 87 LSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGC 127
L+ C + + NNV VS +L+D+Y + G ++ A VFD M R
Sbjct: 213 LNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTV 272
Query: 128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
W +++ GF E+L YFR MQ +PD +T L C++V + GL RY
Sbjct: 273 VSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGL---RY 329
Query: 188 --VPKQDFKDNVRV--CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+ D++ + R+ L+D+YSR G +E A ++ Q M + N +++G
Sbjct: 330 FQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKP----NEVVIG 379
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 168/333 (50%), Positives = 208/333 (62%), Gaps = 54/333 (16%)
Query: 26 KKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVT 85
K IQ +N +ST +TTV WTS I+ R+G + EAA EF+ M L G P+HITF+
Sbjct: 18 KNHANPKIQRHN-QSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIA 76
Query: 86 LLSGCADFPS--------------------NNVMVSTALLDMYAKFGRMDLATVVFDVM- 124
LLSGC DF S N+VMV TA++ MY+K GR A +VFD M
Sbjct: 77 LLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYME 136
Query: 125 --------------------------------RGCDFWTALLNGFVKRDYFEEALEYFRV 152
R WTA++NGFVK+ Y EEAL +FR
Sbjct: 137 DKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFRE 196
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
MQISGV+PDY+ II+ LN C N+ L GLW+HRYV QDFK+NVRV N+L+D+Y R GC
Sbjct: 197 MQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGC 256
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+EFARQVF M KRT+VSWNS+IVGFA NG E+L YF MQ+ FK D V+FTGALTA
Sbjct: 257 VEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTA 316
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
CSH GL+E+GL+YF IMK YR+SP+IEH+GC+
Sbjct: 317 CSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCL 349
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 35/234 (14%)
Query: 32 SIQTNNSKSTIDTT-----VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL 86
S Q +N+ D + WT+ I+ + G EA L F M++ G P ++ +
Sbjct: 153 SGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAA 212
Query: 87 LSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGC 127
L+ C + + NNV VS +L+D+Y + G ++ A VF M R
Sbjct: 213 LNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTV 272
Query: 128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
W +++ GF E+L YFR MQ G +PD +T L C++V + GL RY
Sbjct: 273 VSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGL---RY 329
Query: 188 --VPKQDFKDNVRV--CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+ K D++ + R+ L+D+YSR G +E A ++ Q M + N +++G
Sbjct: 330 FQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKP----NEVVIG 379
>gi|255565773|ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536964|gb|EEF38602.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 384
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/321 (51%), Positives = 216/321 (67%), Gaps = 54/321 (16%)
Query: 24 NLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITF 83
+L + P+ +++ ++S ID T+ WTSSISRHC +G + EAA FT+MRL P+HITF
Sbjct: 39 HLIQHPRTNLKHQCNRS-IDLTIAWTSSISRHCCNGQLPEAASLFTQMRLAAVEPNHITF 97
Query: 84 VTLLSGCADFP--------------------SNNVMVSTALLDMYAKFGRMDLATVVFD- 122
TL+S CADFP + NVMV TAL+DMYAK G++ LA ++FD
Sbjct: 98 ATLISFCADFPFQGKSIGPSIHAYVRKLGLDTCNVMVGTALVDMYAKCGKVQLARLIFDD 157
Query: 123 ---------------VMRGCDF-----------------WTALLNGFVKRDYFEEALEYF 150
MR + WT ++GF+K+ +FE+ALE+F
Sbjct: 158 LKVKNSVSWNTMIDGYMRNGETGSAMELFDEMPEKDAISWTVFIDGFIKKGHFEQALEWF 217
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R MQ+S VEPDY+TII+VL+ CAN+ LG+GLW+HRYV +++F++NVR+ N+L+D+YSR
Sbjct: 218 REMQVSKVEPDYVTIIAVLSACANLGALGLGLWIHRYVLEKEFRNNVRIGNSLIDMYSRC 277
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
GCIE ARQVF +M KRTLVSWNSIIVGFA NGF EALEYF LMQK FK D VSFTGAL
Sbjct: 278 GCIELARQVFHKMLKRTLVSWNSIIVGFAANGFAEEALEYFGLMQKEGFKPDGVSFTGAL 337
Query: 271 TACSHAGLIEDGLQYFDIMKK 291
TACSHAG++++GL+ FDIMK+
Sbjct: 338 TACSHAGMVDEGLKCFDIMKR 358
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 8/171 (4%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLG--IGLWMHRY 187
WT+ ++ EA F M+++ VEP+++T ++++ CA+ G IG +H Y
Sbjct: 62 WTSSISRHCCNGQLPEAASLFTQMRLAAVEPNHITFATLISFCADFPFQGKSIGPSIHAY 121
Query: 188 VPKQDFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
V K NV V L+D+Y++ G ++ AR +F + + VSWN++I G+ NG G
Sbjct: 122 VRKLGLDTCNVMVGTALVDMYAKCGKVQLARLIFDDLKVKNSVSWNTMIDGYMRNGETGS 181
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSP 297
A+E F+ M + D +S+T + G E L++F M ++ +V P
Sbjct: 182 AMELFDEMP----EKDAISWTVFIDGFIKKGHFEQALEWFREM-QVSKVEP 227
>gi|347954512|gb|AEP33756.1| chloroplast biogenesis 19, partial [Raphanus sativus]
Length = 476
Score = 316 bits (809), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 163/331 (49%), Positives = 207/331 (62%), Gaps = 41/331 (12%)
Query: 7 ATILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAAL 66
AT+ PF+ + N Q ST +TTV WTS I+ R+G + EAA
Sbjct: 5 ATVTAHPFISRNNHANPKTHHLNQ---------STPETTVSWTSRITLLSRNGRLAEAAK 55
Query: 67 EFTRMRLYGTNPSHITFVTLLSGCAD----------------FPSNNVMVSTALLDMYAK 110
E T MRL G P+HIT + LLSGC+D F N+VMV TA+L MY+K
Sbjct: 56 ELTAMRLAGVEPNHITLIALLSGCSDCEPLGDSLHGYACKLGFDRNHVMVGTAILGMYSK 115
Query: 111 FGRMDLATVVFDVM----------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
R A +VFD M R T ++NGFVK+ EEAL +FR MQ
Sbjct: 116 RRRFRKARLVFDRMGDXNSVTWNTMIDGYXRDLISXTXMINGFVKKGLNEEALAWFREMQ 175
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+SGVEPDY+ II+ L C N+ L GLW+HRYV QDFK+NVRV N+L+D+Y R GC+E
Sbjct: 176 VSGVEPDYVAIIAALAACTNLGALSFGLWVHRYVVSQDFKNNVRVSNSLIDLYCRCGCVE 235
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
FARQVF +M KRT+VSWNS+IVGFA NG E+L YF MQ+ FK D V+FTGALTACS
Sbjct: 236 FARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEERFKPDAVTFTGALTACS 295
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H GL+E+G++YF+ MK+ YR+SP+IEH+GC+
Sbjct: 296 HVGLVEEGVRYFEAMKRDYRISPRIEHYGCL 326
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 30/215 (13%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ T I+ + G EA F M++ G P ++ + L+ C + +
Sbjct: 149 ISXTXMINGFVKKGLNEEALAWFREMQVSGVEPDYVAIIAALAACTNLGALSFGLWVHRY 208
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
NNV VS +L+D+Y + G ++ A VFD M R W +++ GF + E+
Sbjct: 209 VVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHES 268
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP--KQDFKDNVRVCN--T 202
L YFR MQ +PD +T L C++V + G+ RY K+D++ + R+ +
Sbjct: 269 LVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGV---RYFEAMKRDYRISPRIEHYGC 325
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
L+D+YSR G +E A +V + M + N +++G
Sbjct: 326 LVDLYSRAGRLEDALKVVESMPMKP----NEVVIG 356
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 158/322 (49%), Positives = 206/322 (63%), Gaps = 53/322 (16%)
Query: 37 NSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS- 95
+++ST +T V WTS I+ RS + EAA EF MRL G P+HITF+ LLSGC DFPS
Sbjct: 3 HNQSTSETIVSWTSRITLLTRSAXLAEAAKEFADMRLAGVEPTHITFIALLSGCGDFPSG 62
Query: 96 -------------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF------- 129
N+VMV TA+L MY+K GR+ A +VFD M +
Sbjct: 63 SETLGDLLHGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMI 122
Query: 130 --------------------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
WTA++NGFVK+ + EEAL +FR MQISGV+PDY+
Sbjct: 123 DGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYV 182
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
II+ LN C N+ L +GLW+HRYV QDFK+NVRV N+L+D+Y R GC+EFAR+VF +M
Sbjct: 183 AIIAALNACTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKM 242
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
KRT+VSWNS+IVGFA NG E+L YF MQ+ FK + V+FTGALTACSH GL+++GL
Sbjct: 243 EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTGALTACSHVGLVDEGL 302
Query: 284 QYFDIMKKIYRVSPQIEHHGCI 305
++F MK+ Y +SP+IEH+GC+
Sbjct: 303 RFFQSMKRDYNISPRIEHYGCL 324
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ ++ + G EA + F M++ G P ++ + L+ C + +
Sbjct: 147 ISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALNACTNLGALSLGLWVHRY 206
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
NNV VS +L+D+Y + G ++ A VFD M R W +++ GF E+
Sbjct: 207 VMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHES 266
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV--CNTLM 204
L YFR MQ G +P+ +T L C++V + GL + + K+D+ + R+ L+
Sbjct: 267 LVYFRKMQEEGFKPNAVTFTGALTACSHVGLVDEGLRFFQSM-KRDYNISPRIEHYGCLV 325
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
D+YSR G +E A +V Q M + N +++G
Sbjct: 326 DLYSRAGRLEDALKVVQSMPMKP----NEVVIG 354
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 314 bits (804), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 162/333 (48%), Positives = 207/333 (62%), Gaps = 54/333 (16%)
Query: 26 KKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVT 85
K IQ N +ST +T V WTS I+ R+G + EAA EF+ MRL G P+HITF+
Sbjct: 7 KHHADPKIQKLN-QSTSETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIA 65
Query: 86 LLSGCADFPSN--------------------NVMVSTALLDMYAKFGRMDLATVVFDVM- 124
LLSGC DF S +VMV TA+L MY+K R+ A +VFD M
Sbjct: 66 LLSGCGDFSSGSEALGDLLHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYME 125
Query: 125 --------------------------------RGCDFWTALLNGFVKRDYFEEALEYFRV 152
R WTA++NGFVK+ + EEAL +FR
Sbjct: 126 DKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFRE 185
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
MQISGV+PDY+ II+ LN C N+ L GLW+HRYV QDFK+NV+V N+L+D+Y R GC
Sbjct: 186 MQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGC 245
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+EFAR+VF +M KRT+VSWNS+IVGFA NG E+L YF MQ+ FK D V+FTGALTA
Sbjct: 246 VEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTA 305
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
CSH GL+E+GL+YF MK+ +R+SP+IEH+GC+
Sbjct: 306 CSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCL 338
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 104/215 (48%), Gaps = 30/215 (13%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ I+ + G EA F M++ G P ++ + L+ C + +
Sbjct: 161 ISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRY 220
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
NNV VS +L+D+Y + G ++ A VFD M R W +++ GF E+
Sbjct: 221 VMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHES 280
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP--KQDFKDNVRVCN--T 202
L YFR MQ G +PD +T L C++V + GL RY K+D + + R+ +
Sbjct: 281 LVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGL---RYFQTMKRDHRISPRIEHYGC 337
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
L+D+YSR G +E A +V Q M + N +++G
Sbjct: 338 LVDLYSRAGRLEEALKVVQSMPMKP----NEVVIG 368
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 159/321 (49%), Positives = 203/321 (63%), Gaps = 53/321 (16%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN 97
++ST +TTV WTS I+ R+G + EAA F+ MRL G P+HITF+ LLSGC DFPS +
Sbjct: 20 NQSTSETTVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFIALLSGCGDFPSGS 79
Query: 98 --------------------VMVSTALLDMYAKFGRMDLATVVFDVM------------- 124
VMV TA++ MY+K G + A +VFD M
Sbjct: 80 ETLSNLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMID 139
Query: 125 --------------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
R WTA++NGFVK+ + EEAL +FR MQISGV PDY+
Sbjct: 140 GYMRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVA 199
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
II+ LN C N+ L GLW+HRYV QDFK+NVRV N+L+D+Y R GC+EFAR+VF +M
Sbjct: 200 IIAALNACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKME 259
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
KRT+VSWNS+IVGFA NG E+L YF MQ+ FK D V+FTGALTACSH GL+E+GL+
Sbjct: 260 KRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLR 319
Query: 285 YFDIMKKIYRVSPQIEHHGCI 305
YF MK+ Y +SP+IEH+GC+
Sbjct: 320 YFQTMKRDYGISPRIEHYGCL 340
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 30/215 (13%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ I+ + G EA + F M++ G P ++ + L+ C + +
Sbjct: 163 ISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALNACTNLGALSFGLWVHRY 222
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
NNV VS +L+D+Y + G ++ A VFD M R W +++ GF E+
Sbjct: 223 VMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHES 282
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP--KQDFKDNVRV--CNT 202
L YFR MQ G +PD +T L C++V + GL RY K+D+ + R+
Sbjct: 283 LVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGL---RYFQTMKRDYGISPRIEHYGC 339
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
L+D+YSR G +E A +V + M + N +++G
Sbjct: 340 LVDLYSRAGRLEDALKVIESMPMKP----NEVVIG 370
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/346 (47%), Positives = 210/346 (60%), Gaps = 61/346 (17%)
Query: 13 PFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMR 72
PF+ Q K QI ++ST +TTV WTS I+ R+G + EAA EF+ MR
Sbjct: 6 PFVTRQ--------KSSQIQRILKLNQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSMR 57
Query: 73 LYGTNPSHITFVTLLSGCADFPSN--------------------NVMVSTALLDMYAKFG 112
L G P+HITF+ LLSGC D S +VMV TA+L MY+K G
Sbjct: 58 LAGVEPNHITFIALLSGCGDVSSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRG 117
Query: 113 RMDLATVVFDVM---------------------------------RGCDFWTALLNGFVK 139
R A +VFD M R WTA++NGFVK
Sbjct: 118 RFGKARLVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVK 177
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
+ + EEAL +FR MQISGV+PDY+ II+ L C ++ L GLW+HRYV QDFK+N+RV
Sbjct: 178 KGFHEEALAWFREMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRV 237
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
N+L+D+Y R GC+EFAR+VF +M KRT+VSWNS+IVGFA NG E+L YF MQ+ F
Sbjct: 238 SNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGF 297
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
K D V+FTGALTACSH GL+E+GL+YF MK+ +R+SP+IEH+GC+
Sbjct: 298 KPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCL 343
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 35/234 (14%)
Query: 32 SIQTNNSKSTIDTT-----VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL 86
S Q NN+ D + WT+ I+ + G EA F M++ G P ++ +
Sbjct: 147 SGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAA 206
Query: 87 LSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGC 127
L+ C + NN+ VS +L+D+Y + G ++ A VFD M R
Sbjct: 207 LAACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKMEKRTV 266
Query: 128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
W +++ GF E+L YFR MQ G +PD +T L C++V + GL RY
Sbjct: 267 VSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGL---RY 323
Query: 188 VP--KQDFKDNVRV--CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
K+D + + R+ L+D+YSR G +E A V Q M + N +++G
Sbjct: 324 FQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKP----NEVVIG 373
>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 157/346 (45%), Positives = 217/346 (62%), Gaps = 72/346 (20%)
Query: 16 PHQQNRNQNLKKRPQIS---IQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMR 72
P+ + RP + + +++ S ID V WTSSI+ HCR+G + EAA EF+RM+
Sbjct: 22 PNSKPNQPTFPSRPHSTKYHLTRSHTHSPIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQ 81
Query: 73 LYGTNPSHITFVTLLSGCADFP--------------------SNNVMVSTALLDMYAKFG 112
+ G P+HITF+TLLS C DFP + NVMV TAL+DMY+K G
Sbjct: 82 IAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCG 141
Query: 113 RMDLATVVFDVM---------------------------------RGCDFWTALLNGFVK 139
++DLA ++FD M R WT+++ GFVK
Sbjct: 142 QLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVK 201
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
+ FE+ALE+FR MQ++GVEPDY+TIISVL CAN+ LG+GLW++R+V KQDFKDN+++
Sbjct: 202 KGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKI 261
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
N+L+D+YSR GCI ARQVF++M KR+LVSWNS+IVGFA+NG EALE+FNLM+K
Sbjct: 262 SNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKE-- 319
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H+GL+++GLQ+FDIMK+ ++SP+IEH+GC+
Sbjct: 320 --------------GHSGLVDEGLQFFDIMKRTRKISPRIEHYGCL 351
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 102/226 (45%), Gaps = 41/226 (18%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
+ WTS I + GC +A F M+L G P ++T +++L+ CA+ +
Sbjct: 189 AISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINR 248
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+N+ +S +L+DMY++ G + LA VF+ M R W +++ GF + EE
Sbjct: 249 FVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEE 308
Query: 146 ALEYFRVMQI---SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
ALE+F +M+ SG+ + L ++ RT I + Y
Sbjct: 309 ALEFFNLMRKEGHSGLVDEGLQFFDIMK-----RTRKISPRIEHY-------------GC 350
Query: 203 LMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEA 247
L+D+YSR G +E A V M K V S++ +G VG A
Sbjct: 351 LVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLA 396
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 161/346 (46%), Positives = 203/346 (58%), Gaps = 62/346 (17%)
Query: 13 PFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMR 72
P + N N ++K Q ST +T V WTS I+ R + EAA EF+ MR
Sbjct: 10 PLTTRKNNVNPKIQKLNQ---------STSETIVSWTSRITLLSRDDRLAEAAREFSDMR 60
Query: 73 LYGTNPSHITFVTLLSGCADFPS--------------------NNVMVSTALLDMYAKFG 112
L G P+HITF++LLS C +FPS ++VMV TA+L MY+K G
Sbjct: 61 LAGIEPNHITFISLLSACGNFPSGSEALSDLLHGYACKLGLDRSHVMVGTAILGMYSKRG 120
Query: 113 RMDLATVVFDVM---------------------------------RGCDFWTALLNGFVK 139
+ A +VFD M R WTA++ GFVK
Sbjct: 121 HVRKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWTAMITGFVK 180
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
+ + EEAL +FR MQISGV PDY+ II+ L C N+ L GLW HRYV QDF++NVRV
Sbjct: 181 KGFHEEALAWFREMQISGVNPDYVAIIAALAACTNLGALSFGLWAHRYVVSQDFRNNVRV 240
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
N+L+D+Y R GC+EFARQVF M KRT+VSWNS+IVGFA NG E+L YF MQ+ F
Sbjct: 241 SNSLIDLYCRCGCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGF 300
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
K D V+FTGALTACSH GL+E+G QYF +MK YR+SP+IEH GC+
Sbjct: 301 KPDAVTFTGALTACSHVGLVEEGFQYFQMMKTDYRISPRIEHFGCL 346
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ I+ + G EA F M++ G NP ++ + L+ C + +
Sbjct: 169 ISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAALAACTNLGALSFGLWAHRY 228
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
NNV VS +L+D+Y + G ++ A VFD M R W +++ GF E+
Sbjct: 229 VVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNANES 288
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN--TLM 204
L YFR MQ G +PD +T L C++V + G + + K D++ + R+ + L+
Sbjct: 289 LVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGFQYFQMM-KTDYRISPRIEHFGCLV 347
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
D+YSR G +E A +V + M + N +++G
Sbjct: 348 DLYSRAGRLEDAIKVVESMPMKP----NEVVIG 376
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 158/333 (47%), Positives = 201/333 (60%), Gaps = 54/333 (16%)
Query: 26 KKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVT 85
K IQ N +ST +T V WTS I+ R G + EA EF+ MRL G P+HITF+
Sbjct: 3 KNHANPKIQKLN-QSTSETIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIA 61
Query: 86 LLSGCADFPS--------------------NNVMVSTALLDMYAKFGRMDLATVVFDVM- 124
LLS C +FPS ++VMV TA+L MY+K G + A +VFD +
Sbjct: 62 LLSACGNFPSGSEGLGYLLHGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIE 121
Query: 125 --------------------------------RGCDFWTALLNGFVKRDYFEEALEYFRV 152
R WTA++ GFVK+ + EEAL +FR
Sbjct: 122 DKNSVTWNTMIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFRE 181
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
MQISGV PDY+ IIS + C N+ L GLW+HRYV QDF++NVRV N+L+D+Y R GC
Sbjct: 182 MQISGVNPDYVAIISAVAACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGC 241
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+EFARQVF +M KRT+VSWNS+IVGFA NG E+L YF MQ+ F D V+FTGALTA
Sbjct: 242 VEFARQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTA 301
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
CSH GL+E+G QYF +MK YR+SP+IEH+GC+
Sbjct: 302 CSHVGLVEEGFQYFQMMKHDYRISPRIEHYGCL 334
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 26/213 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ I+ + G EA F M++ G NP ++ ++ ++ C + +
Sbjct: 157 ISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVAACTNLGALSFGLWVHRY 216
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
NNV VS +L+D+Y + G ++ A VFD M R W +++ GF E+
Sbjct: 217 VLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNANES 276
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV--CNTLM 204
L YFR MQ G PD +T L C++V + G + + K D++ + R+ L+
Sbjct: 277 LVYFRKMQREGFTPDGVTFTGALTACSHVGLVEEGFQYFQMM-KHDYRISPRIEHYGCLV 335
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
D+YSR G +E A V + M + N +++G
Sbjct: 336 DLYSRAGRLEDAFIVVESMPMKP----NEVVIG 364
>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 161/326 (49%), Positives = 205/326 (62%), Gaps = 49/326 (15%)
Query: 29 PQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS 88
P + ++ST +TTV WTS I+ R+G + EAA EFT MRL G P+HIT + LLS
Sbjct: 13 PNPKLHQKLNQSTSETTVSWTSRITLLSRNGRLAEAAKEFTAMRLAGVEPNHITLIALLS 72
Query: 89 GCAD----------------FPSNNVMVSTALLDMYAK---------------------- 110
GCAD N VMV TA+L MY+K
Sbjct: 73 GCADCEPFGDSLHGYACKLGLDRNQVMVGTAILGMYSKRRRFRKARLVFDRVEDKNSVTW 132
Query: 111 ---------FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVE 159
GR+D A VFD M D WTA++NGFVK+ EEAL +FR MQ+SGV+
Sbjct: 133 NTMIDGYMRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVK 192
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PDY+ +I+ L CAN+ L GLW+HR+V QDFK+NVRV N+L+D+Y R GC+EFARQV
Sbjct: 193 PDYVAVIAALAACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQV 252
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F M KRT+VSWNS+IVGFA NG E+L YF MQ+ FK D V+FTGALTACSH GL+
Sbjct: 253 FDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTFTGALTACSHVGLV 312
Query: 280 EDGLQYFDIMKKIYRVSPQIEHHGCI 305
E+G++YF+ MK+ YR+SP+IEH+GC+
Sbjct: 313 EEGVRYFEAMKRDYRISPRIEHYGCL 338
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 32/216 (14%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHIT------------------FVTLL 87
+ WT+ I+ + G EA F M++ G P ++ +V
Sbjct: 161 ISWTAMINGFVKKGLHEEALAWFREMQVSGVKPDYVAVIAALAACANLGALSFGLWVHRF 220
Query: 88 SGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
DF NNV VS +L+D+Y + G ++ A VFD M R W +++ GF + E
Sbjct: 221 VVSQDF-KNNVRVSNSLIDLYCRCGCVEFARQVFDEMEKRTVVSWNSVIVGFAANGHAHE 279
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP--KQDFKDNVRVCN-- 201
+L YFR MQ +PD +T L C++V + G+ RY K+D++ + R+ +
Sbjct: 280 SLVYFRRMQEERFKPDAVTFTGALTACSHVGLVEEGV---RYFEAMKRDYRISPRIEHYG 336
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
L+D+YSR G +E A +V + M + N +++G
Sbjct: 337 CLVDLYSRAGRLEEALKVVESMPMKP----NEVVIG 368
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 147/288 (51%), Positives = 194/288 (67%), Gaps = 53/288 (18%)
Query: 71 MRLYGTNPSHITFVTLLSGCADFPSN--------------------NVMVSTALLDMYAK 110
MRL +P+H+TF+TLLSGCAD PS N+MV TAL+DMYAK
Sbjct: 1 MRLLEIDPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAK 60
Query: 111 FGRMDLATVVFDVM---------------------------------RGCDFWTALLNGF 137
G ++L+ + FD + RG WT L+NGF
Sbjct: 61 CGHVELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGF 120
Query: 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197
VK FEEALE+FR MQ+S VEPD +TI++VL+ CAN+ LG+GLW+HRY K+ +DNV
Sbjct: 121 VKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNV 180
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
++CN+L+D+YSR G IE ARQVF++M +RTLVSWNSII G A NGF EALE+F+LMQK
Sbjct: 181 KICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQ 240
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
FK ++VSFTGALTACSH GL+++GL+YFDIM++++++SP+IEH+GCI
Sbjct: 241 GFKPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCI 288
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 154/327 (47%), Positives = 201/327 (61%), Gaps = 55/327 (16%)
Query: 34 QTN--NSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA 91
QTN K + TT+ WTS I+ R+G + EAA EF+ MR G P+HITF+ LLSGC
Sbjct: 19 QTNAKTQKLNLSTTISWTSRITLLSRNGRLAEAAKEFSDMRFAGVEPNHITFIALLSGCG 78
Query: 92 DFPS--------------------NNVMVSTALLDMYAKFGRMDLATVVFDVM------- 124
DF S N+VMV TA++ MY+K GR+ A +VFD M
Sbjct: 79 DFSSGSESFGDLLHGYACKLGLDRNHVMVGTAIIGMYSKHGRVSKARLVFDHMEGKNSMT 138
Query: 125 --------------------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
RG WTA++NGFVK+ + EEAL +FR MQ SGV
Sbjct: 139 WNTMIDGYMRKGKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEALVWFREMQSSGV 198
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
EPDY+ II+VL C N+ L GLW+HRY+ +DF++NVRV N+ +D++ R GC+E A+
Sbjct: 199 EPDYVAIIAVLAACTNLGALSFGLWVHRYLVSRDFRNNVRVNNSSIDLHCRCGCVELAQP 258
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF M KRT+VSWNS+IV F+ NG E+L YF MQ+ FK + V+FTGALTACSH GL
Sbjct: 259 VFDHMEKRTVVSWNSVIVVFSANGHADESLVYFRRMQEEGFKPNAVTFTGALTACSHVGL 318
Query: 279 IEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+E+GL+YF MKK YR+SP+IEH+GC+
Sbjct: 319 VEEGLRYFQTMKKEYRISPRIEHYGCL 345
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 30/215 (13%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ I+ + G EA + F M+ G P ++ + +L+ C + +
Sbjct: 168 ISWTAMINGFVKKGFHEEALVWFREMQSSGVEPDYVAIIAVLAACTNLGALSFGLWVHRY 227
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
NNV V+ + +D++ + G ++LA VFD M R W +++ F + +E+
Sbjct: 228 LVSRDFRNNVRVNNSSIDLHCRCGCVELAQPVFDHMEKRTVVSWNSVIVVFSANGHADES 287
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP--KQDFKDNVRV--CNT 202
L YFR MQ G +P+ +T L C++V + GL RY K++++ + R+
Sbjct: 288 LVYFRRMQEEGFKPNAVTFTGALTACSHVGLVEEGL---RYFQTMKKEYRISPRIEHYGC 344
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
L+D+YSR G +E A V Q M + N +++G
Sbjct: 345 LVDLYSRAGRLEDALNVVQSMPMKP----NEVVIG 375
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 154/344 (44%), Positives = 211/344 (61%), Gaps = 63/344 (18%)
Query: 16 PHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYG 75
P+ N+NQ L + K + TV WTSSIS HC++ L+AA EF +M
Sbjct: 32 PNNPNKNQTLSLK---------HKPNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAE 82
Query: 76 TNPSHITFVTLLSGCADFPS---------------------NNVMVSTALLDMYAKFGRM 114
P+HIT +TLLS CA PS N+VMV TAL+DMYAK G++
Sbjct: 83 VEPNHITLITLLSACAHSPSKTSITFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKL 142
Query: 115 DLATVVFD----------------VMRGCDF-----------------WTALLNGFVKRD 141
D A +VFD M+ D WT ++ GFVK++
Sbjct: 143 DYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKE 202
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
+EEALE FR MQ++GV PD++T+I++++ CAN+ LG+GLW+HR V K++F+DNV+V N
Sbjct: 203 CYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLN 262
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
+L+D+Y+R GCIE ARQVF M +R LVSWNSIIVGFAVNG +AL +F M+K +
Sbjct: 263 SLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEP 322
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ VS+T ALTACSHAGLI++GL+ F +K+ +R SP+IEH+GC+
Sbjct: 323 NGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCL 366
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 22/206 (10%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--- 95
K + V WT I + C EA F M+L G P +T + ++S CA+ +
Sbjct: 182 KLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGL 241
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK 139
+NV V +L+DMYA+ G ++LA VFD M R W +++ GF
Sbjct: 242 GLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAV 301
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
++AL +FR M+ G+EP+ ++ S L C++ + GL + + K+D +++ R+
Sbjct: 302 NGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADI-KRDHRNSPRI 360
Query: 200 --CNTLMDVYSRFGCIEFARQVFQRM 223
L+D+YSR G ++ A V ++M
Sbjct: 361 EHYGCLVDLYSRAGRLKEAWDVIKKM 386
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 148/295 (50%), Positives = 184/295 (62%), Gaps = 53/295 (17%)
Query: 64 AALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------------------NVMVSTA 103
A F+ MR G P+HITF+ LLSGC DFPS +VMV TA
Sbjct: 2 GAQGFSDMRFAGVEPNHITFIALLSGCGDFPSGSEALGDLLHGYACKLGLDRTHVMVGTA 61
Query: 104 LLDMYAKFGRMDLATVVFDVM---------------------------------RGCDFW 130
+L MY+K GR A ++FD M R W
Sbjct: 62 ILGMYSKRGRFRKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISW 121
Query: 131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
TA++NGFVK+ + EEAL +FR MQISGV+PDY+ II+ L C N+ L GLW+HRYV
Sbjct: 122 TAMVNGFVKKGFHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMS 181
Query: 191 QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 250
QDFK+NVRV N+L+D+Y R GC+EFARQVF +M KRT+VSWNS+IVGFA NG E+L Y
Sbjct: 182 QDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFY 241
Query: 251 FNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F MQ+ FK D V+FTGALTACSH GL+E+GL+YF MK+ YR+SP+IEH+GCI
Sbjct: 242 FRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCI 296
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 181/292 (61%), Gaps = 53/292 (18%)
Query: 67 EFTRMRLYGTNPSHITFVTLLSGCADFPSN--------------------NVMVSTALLD 106
EF+ MRL G P+HITF+ LLSG D S +VMV TA+L
Sbjct: 1 EFSGMRLAGVEPNHITFIALLSGWGDLLSGSEALGDLLHGYACKLGLDRAHVMVGTAILG 60
Query: 107 MYAKFGRMDLATVVFDVM---------------------------------RGCDFWTAL 133
MY+K GR A +VFD M R WTA+
Sbjct: 61 MYSKRGRFRKARLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAM 120
Query: 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193
+NGFVK+ + EEAL +FR MQISGV+PDY+ II+ L C N+ L GLW+HRYV QDF
Sbjct: 121 INGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDF 180
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
K+NVRV N+L+D+Y R GC+EFARQVF +M KRT+VSWNS+IVGFA NG E+L YF
Sbjct: 181 KNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRK 240
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
MQ+ FK + V+FTGAL AC+H GL+E+GL+YF MK+ YR+SP+IEH+GC+
Sbjct: 241 MQEEGFKPNAVTFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCL 292
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 30/215 (13%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ I+ + G EA F M++ G P ++ + L+ C + +
Sbjct: 115 ISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRY 174
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
NNV VS +L+D+Y + G ++ A VFD M R W +++ GF + E+
Sbjct: 175 VVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHES 234
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP--KQDFKDNVRV--CNT 202
L YFR MQ G +P+ +T L C +V + GL RY K+D++ + R+
Sbjct: 235 LVYFRKMQEEGFKPNAVTFTGALAACNHVGLVEEGL---RYFQSMKRDYRISPRIEHYGC 291
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
L+D+YSR G +E A +V Q M + N +++G
Sbjct: 292 LVDLYSRAGRLEDALKVVQSMPMKP----NEVVIG 322
>gi|347954488|gb|AEP33744.1| chloroplast biogenesis 19, partial [Aethionema grandiflorum]
Length = 413
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 140/288 (48%), Positives = 181/288 (62%), Gaps = 53/288 (18%)
Query: 71 MRLYGTNPSHITFVTLLSGCADFPSN--------------------NVMVSTALLDMYAK 110
MRL G P+HITF+ L+SGC DFP+ +VMV TA+L MY+K
Sbjct: 8 MRLAGFEPNHITFIALISGCGDFPTGSETLGDLLHGYACKLGLDRTHVMVGTAILGMYSK 67
Query: 111 -------------------------------FGRMDLATVVFDVMRGCDF--WTALLNGF 137
G++D A +FD M D WTA++NGF
Sbjct: 68 RCRFGKARCVFDYMEDKNSVTWNTMIDAYMRSGKVDRAVKLFDEMPDPDLISWTAMINGF 127
Query: 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197
VK+ + EEAL +FR MQISGV+PDY+ II+ L C N+ L GLW+HRYV QDFK+NV
Sbjct: 128 VKKGFHEEALVWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWVHRYVLSQDFKNNV 187
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
RV N+L+D+Y R GC+EFAR+VF +M KRT+VSWNS+IVG A NG E+L YF MQ+
Sbjct: 188 RVNNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEE 247
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F D V+FTGALTACSH GL+E+G+QYF MK+ Y++SP+IEH+GC+
Sbjct: 248 GFNPDAVTFTGALTACSHVGLVEEGIQYFQTMKRDYKISPRIEHYGCL 295
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ I+ + G EA + F M++ G P ++ + L+ C + +
Sbjct: 118 ISWTAMINGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWVHRY 177
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
NNV V+ +L+D+Y + G ++ A VFD M R W +++ G E+
Sbjct: 178 VLSQDFKNNVRVNNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHES 237
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV--CNTLM 204
L YFR MQ G PD +T L C++V + G+ + + K+D+K + R+ L+
Sbjct: 238 LVYFRKMQEEGFNPDAVTFTGALTACSHVGLVEEGIQYFQTM-KRDYKISPRIEHYGCLV 296
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
D+YSR G +E A ++ Q M + N +++G
Sbjct: 297 DLYSRAGRLEDALKLVQSMSMKP----NEVVIG 325
>gi|87240913|gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 497
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 145/344 (42%), Positives = 198/344 (57%), Gaps = 83/344 (24%)
Query: 16 PHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYG 75
P+ N+NQ L + K + TV WTSSIS HC++ L+AA EF +M
Sbjct: 32 PNNPNKNQTLSLK---------HKPNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAE 82
Query: 76 TNPSHITFVTLLSGCADFPS---------------------NNVMVSTALLDMYAKFGRM 114
P+HIT +TLLS CA PS N+VMV TAL+DMYAK G++
Sbjct: 83 VEPNHITLITLLSACAHSPSKTSITFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKL 142
Query: 115 DLATVVFD----------------VMRGCDF-----------------WTALLNGFVKRD 141
D A +VFD M+ D WT ++ GFVK++
Sbjct: 143 DYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKE 202
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
+EEALE FR MQ++GV PD++T+I++++ CAN+ LG+GLW+HR V K++F+DNV+V N
Sbjct: 203 CYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLN 262
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
+L+D+Y+R GCIE ARQVF M +R LVSWNSIIVGFAVNG +AL +F
Sbjct: 263 SLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFF---------- 312
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
CSHAGLI++GL+ F +K+ +R SP+IEH+GC+
Sbjct: 313 ----------PCSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCL 346
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 42/206 (20%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--- 95
K + V WT I + C EA F M+L G P +T + ++S CA+ +
Sbjct: 182 KLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGL 241
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK 139
+NV V +L+DMYA+ G ++LA VFD M R W +++ GF
Sbjct: 242 GLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAV 301
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
++AL +F C++ + GL + + K+D +++ R+
Sbjct: 302 NGLADKALSFFP--------------------CSHAGLIDEGLKIFADI-KRDHRNSPRI 340
Query: 200 --CNTLMDVYSRFGCIEFARQVFQRM 223
L+D+YSR G ++ A V ++M
Sbjct: 341 EHYGCLVDLYSRAGRLKEAWDVIKKM 366
>gi|347954506|gb|AEP33753.1| chloroplast biogenesis 19, partial [Matthiola incana]
Length = 324
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/173 (61%), Positives = 136/173 (78%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
++NGFVK+ + EEAL +FR MQISGV+PDY+ II+ LN C N+ L GLW+HRYV QD
Sbjct: 1 MINGFVKKGFQEEALVWFREMQISGVKPDYVAIIAALNACTNLGXLSFGLWVHRYVMNQD 60
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
FK+NVRV N+ +D+Y R GC+EFAR+VF +M KRT+VSWNS+IVGFA NG E+L YF
Sbjct: 61 FKNNVRVSNSXIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFR 120
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
MQ+ FK D V+FTGALTACSH G +E+GL+YF IMK YR+SP+IEH+G +
Sbjct: 121 KMQEKGFKPDAVTFTGALTACSHVGXVEEGLRYFQIMKCDYRISPRIEHYGXL 173
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 30/204 (14%)
Query: 57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVM 99
+ G EA + F M++ G P ++ + L+ C + NNV
Sbjct: 7 KKGFQEEALVWFREMQISGVKPDYVAIIAALNACTNLGXLSFGLWVHRYVMNQDFKNNVR 66
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
VS + +D+Y + G ++ A VFD M R W +++ GF E+L YFR MQ G
Sbjct: 67 VSNSXIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKG 126
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRY--VPKQDFKDNVRV--CNTLMDVYSRFGCI 213
+PD +T L C++V + GL RY + K D++ + R+ L+D+YSR G +
Sbjct: 127 FKPDAVTFTGALTACSHVGXVEEGL---RYFQIMKCDYRISPRIEHYGXLVDLYSRAGRL 183
Query: 214 EFARQVFQRMHKRTLVSWNSIIVG 237
E A ++ Q M + N +++G
Sbjct: 184 EDALKLVQSMPMKP----NEVVIG 203
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 186/337 (55%), Gaps = 56/337 (16%)
Query: 25 LKKRPQISIQTNNS-KSTIDTTVQWTSSISRHCRSGCILEAALEFTRM--RLYGTNPSHI 81
L+ P+ + ++ + + V WTS+I+R R G + AA M P+ +
Sbjct: 11 LRPPPRSTKESQRAPRHAPRDVVSWTSTIARAARQGDLHAAAASLCAMLSSPAAPAPNDV 70
Query: 82 TFVTLLSGCADFPSN--------------------NVMVSTALLDMY------------- 108
T +T+LS CAD PS+ ++++ST L Y
Sbjct: 71 TLLTVLSACADSPSSPLARPLALTLHARALKLFPSHLLLSTCLARFYLASRLPHLALQLF 130
Query: 109 ------------------AKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALE 148
+ G +D A VFD M G D WTAL++GFVK +EA++
Sbjct: 131 DTMPVRSVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAID 190
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
FR M + VEPDY+T+I+V++ CA V LG+G+W+HR V +Q + NVRV N+L+D+Y+
Sbjct: 191 CFRAMLLDSVEPDYVTLIAVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMYA 250
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
R G ++ A QVF + KRT+VSWNS+IVG A NG EA+E F M++ FK D V+ TG
Sbjct: 251 RCGQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTG 310
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTACSHAGL E GL+Y+D+M Y ++ ++EH+GC+
Sbjct: 311 VLTACSHAGLTEHGLRYYDLMTTEYGIAARMEHYGCV 347
>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
Length = 496
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/315 (40%), Positives = 178/315 (56%), Gaps = 55/315 (17%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRM--RLYGTNPSHITFVTLLSGCADFPSN------- 96
V WTS+ISR R G + AA M P+ +T +T+LS CAD PS+
Sbjct: 33 VSWTSTISRAARQGDLHAAAASLCAMVSSPAAPAPNDVTLLTVLSACADSPSSPLASPLA 92
Query: 97 -------------NVMVSTALLDMY-------------------------------AKFG 112
++++ST L Y + G
Sbjct: 93 LTLHARALKLFPSHLLLSTCLARFYLASRLPHLALQLFDSMPVRSVVTYNTMISGLMRNG 152
Query: 113 RMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN 170
+D A VFD M G D WTAL++GFVK +EA++ FR M + GVE DY+T+++V++
Sbjct: 153 LVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGVETDYITLVAVVS 212
Query: 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS 230
CA V LG+G+W+HR V +Q + NVRV N+L+D+Y+R G + A QVF+ + KRT+VS
Sbjct: 213 ACAEVGALGLGMWVHRLVLRQRLERNVRVANSLIDMYARCGQVNLAAQVFRSIRKRTVVS 272
Query: 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
WNS+IVGFA NG +A+E F M++ FK D V+ TG LTACSHAGL E GL+Y+D+M
Sbjct: 273 WNSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMT 332
Query: 291 KIYRVSPQIEHHGCI 305
Y V+ ++EH+GC+
Sbjct: 333 TEYGVAARMEHYGCV 347
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 106/238 (44%), Gaps = 25/238 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WT+ I ++G EA F M L G +IT V ++S CA+ +
Sbjct: 170 VSWTALIDGFVKNGRHDEAIDCFRAMLLDGVETDYITLVAVVSACAEVGALGLGMWVHRL 229
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
NV V+ +L+DMYA+ G+++LA VF +R W +++ GF +A
Sbjct: 230 VLRQRLERNVRVANSLIDMYARCGQVNLAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDA 289
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLMD 205
+E F M+ G +PD +T+ VL C++ GL + + + + ++D
Sbjct: 290 IELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGVAARMEHYGCVVD 349
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA-LEYFNLMQKGVFKTD 262
+ R G ++ A V + M R N +++G + G L+ M + +F+ D
Sbjct: 350 LLGRAGRLDEAMHVVETMPMRP----NEVVLGALLAGCRTHGNLDMAEQMMQHLFELD 403
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 187/336 (55%), Gaps = 56/336 (16%)
Query: 25 LKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNP--SHIT 82
L + PQ + D WTS+I+R + G + AA + M P + +T
Sbjct: 45 LPQPPQNPTPKPRRRPPRDVA-SWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVT 103
Query: 83 FVTLLSGCADFPSN--------------------NVMVSTALLDMY-------------- 108
+T+LS CAD PS+ ++++ST L+ Y
Sbjct: 104 LLTVLSACADSPSSPLARRLALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLALQLFD 163
Query: 109 -----------------AKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEY 149
+ G + A VFD M D WTAL++G VK +EA++
Sbjct: 164 AMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDC 223
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
FR M + GVEPDY+T+I+V++ CA V LG+G+W+HR V +Q + NVR+ N+L+D+Y+R
Sbjct: 224 FRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYAR 283
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G +E ARQVF M KRT+VSWNS+IVGFA NG +A+E+F M++ FK D V+FTG
Sbjct: 284 CGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGV 343
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTACSH GL ++GL+Y+D+M+ Y ++ ++EH+GC+
Sbjct: 344 LTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCV 379
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 186/336 (55%), Gaps = 56/336 (16%)
Query: 25 LKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNP--SHIT 82
L + PQ + D WTS+I+R + G + AA + M P + +T
Sbjct: 11 LPQPPQNPTPKPRRRPPRDVA-SWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVT 69
Query: 83 FVTLLSGCADFPSN--------------------NVMVSTALLDMY-------------- 108
+T+LS CAD PS+ ++++ST L+ Y
Sbjct: 70 LLTVLSACADSPSSPLARRLALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLALQLFD 129
Query: 109 -----------------AKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEY 149
+ G + A VFD M D WTAL++G VK +EA+
Sbjct: 130 AMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINC 189
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
FR M + GVEPDY+T+I+V++ CA V LG+G+W+HR V +Q + NVR+ N+L+D+Y+R
Sbjct: 190 FRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYAR 249
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G +E ARQVF M KRT+VSWNS+IVGFA NG +A+E+F M++ FK D V+FTG
Sbjct: 250 CGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGV 309
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTACSH GL ++GL+Y+D+M+ Y ++ ++EH+GC+
Sbjct: 310 LTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCV 345
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 113/281 (40%), Positives = 167/281 (59%), Gaps = 53/281 (18%)
Query: 78 PSHITFVTLLSGCADFPSN--------------------NVMVSTALLDMY--------- 108
P+ +T +T+LS CAD PS+ ++++ST L+ Y
Sbjct: 10 PNDVTLLTVLSACADSPSSPLARRLALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLA 69
Query: 109 ----------------------AKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFE 144
+ G + A VFD M D WTAL++G VK +
Sbjct: 70 LQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHD 129
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA++ FR M + GVEPDY+T+I+V++ CA V LG+G+W+HR V +Q + NVR+ N+L+
Sbjct: 130 EAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLI 189
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y+R G +E ARQVF M KRT+VSWNS+IVGFA NG +A+E+F M++ FK D V
Sbjct: 190 DMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAV 249
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+FTG LTACSH GL ++GL+Y+D+M+ Y ++ ++EH+GC+
Sbjct: 250 TFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCV 290
>gi|326489701|dbj|BAK01831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 484
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 176/315 (55%), Gaps = 55/315 (17%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRM--RLYGTNPSHITFVTLLSGCADFPSN------- 96
V WT++I+R R G + A + M P+ +T +T+LS CA PS+
Sbjct: 32 VSWTAAIARPAREGDLPATAAALSAMLSSPAAPAPNDVTLLTVLSACAGAPSSPLARPLA 91
Query: 97 -------------NVMVSTALLDMYAK----------FGRMDL----------------- 116
++++ T L Y FG M +
Sbjct: 92 LSLHALAAKLFPSHLLLCTCLARFYLASRLPHLALQLFGSMTVRSLVTYNTMITGLMRNG 151
Query: 117 ----ATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN 170
A VFD M D WTAL++G VK +EA++ F M + GVEPDY+T+++ ++
Sbjct: 152 LVAAAREVFDGMPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAAIS 211
Query: 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS 230
CA V LG+G+W+HR V ++ + N+R+ N+L+D+Y+R G +EFARQVF M RT+VS
Sbjct: 212 ACAEVGALGLGMWVHRLVTRERLEGNIRIANSLIDMYARCGQVEFARQVFDSMRNRTVVS 271
Query: 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
WNS+IVGFA NG +A+E+F M++ F+ D V+FTG LTACSHAGL ++GL+Y+ M+
Sbjct: 272 WNSMIVGFAANGRCTDAIEHFEAMRRKGFRPDAVTFTGVLTACSHAGLTDEGLRYYKAMR 331
Query: 291 KIYRVSPQIEHHGCI 305
+ ++ ++EH+GC+
Sbjct: 332 AEHGITARMEHYGCV 346
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 148/215 (68%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYF 150
P +V+ ++ + G + A VFD M D WTAL++G VK +EA++ F
Sbjct: 132 MPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDEAIDCF 191
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M GVEPDY+T+++ ++ CA V LG+G+W+HR+V + + NVRV N+L+D+Y+R
Sbjct: 192 HSMLRDGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVANSLIDMYARC 251
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G ++FARQVF R+ KRT+VSWNS+IVGFA NG +A+E+F M++ FK D V+FTG L
Sbjct: 252 GQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPDTVTFTGVL 311
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
TACSHAGL ++GL+Y+D M+ + ++ ++EH+GC+
Sbjct: 312 TACSHAGLTDEGLRYYDAMRTEHGIAARMEHYGCV 346
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/314 (35%), Positives = 161/314 (51%), Gaps = 51/314 (16%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN------ 96
DT V W + IS H R G E+ F M G P+ +T+V++LS C +
Sbjct: 85 DTPVAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQ 144
Query: 97 ------------NVMVSTALLDMY-------------------------------AKFGR 113
++ V AL+DMY A+ G+
Sbjct: 145 VHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQ 204
Query: 114 MDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV 171
+D A +FD M R WTA+++G+V F EALE FR MQ S V D T++SV+
Sbjct: 205 VDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITA 264
Query: 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW 231
CA + L +G W+ Y+ +Q K + V N L+D+YS+ G IE A VF+ MH R +W
Sbjct: 265 CAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTW 324
Query: 232 NSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+II+G AVNG+ EA+E F+ M + DEV+F G LTAC+HAGL++ G ++F M +
Sbjct: 325 TAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIE 384
Query: 292 IYRVSPQIEHHGCI 305
Y ++P + H+GCI
Sbjct: 385 AYNIAPNVVHYGCI 398
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 161/285 (56%), Gaps = 21/285 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + IS + +SG EA + F M+ P+ T V +LS C S
Sbjct: 225 VKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKW 284
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ ++ AL+DMY K G D+A +FD + D W ++ G+
Sbjct: 285 IGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSL 344
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCN 201
+EEAL F VM S V+P+ +T + +L+ CA + L +G W+H Y+ K N +
Sbjct: 345 YEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWT 404
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFK 260
+L+D+Y++ GCIE A +VF+ MH R L SWN+++ GFA++G AL F+ M KG+F+
Sbjct: 405 SLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFR 464
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+AC+ AGL++ G QYF M + Y +SP+++H+GC+
Sbjct: 465 PDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCM 509
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 125/263 (47%), Gaps = 50/263 (19%)
Query: 70 RMRLYGTNPSHITFVTLLSGCADFPSN-----------------NVMVSTALLDMYAKFG 112
RM YG P+ TF L C + N V T+++ MYA G
Sbjct: 121 RMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVG 180
Query: 113 RMDLATVVFD-----------------VMRGC--------------DF--WTALLNGFVK 139
MD A +VFD V +GC D W A+++G+V+
Sbjct: 181 EMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQ 240
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
FEEA+ F MQ + V P+ T++ VL+ C + R+ +G W+ +V F N+++
Sbjct: 241 SGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQL 300
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
N L+D+Y + G + AR++F + ++ ++SWN++I G++ EAL F +M +
Sbjct: 301 TNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNV 360
Query: 260 KTDEVSFTGALTACSHAGLIEDG 282
K ++V+F G L AC+ G ++ G
Sbjct: 361 KPNDVTFLGILHACACLGALDLG 383
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 15/217 (6%)
Query: 75 GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALL 134
G N + L+ CA PS ++ + +L + + + + VF W +L+
Sbjct: 55 GLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHN----VF-------IWNSLI 103
Query: 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK 194
G+ +L F M GV+P+ T + C + G +H + K
Sbjct: 104 RGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALH 163
Query: 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
N V +++ +Y+ G ++FAR VF + R VS+ ++I G+ G + +A F+ +
Sbjct: 164 FNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEI 223
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
D VS+ ++ +G E+ + F M++
Sbjct: 224 P----VKDVVSWNAMISGYVQSGRFEEAIVCFYEMQE 256
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 165/320 (51%), Gaps = 53/320 (16%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN- 96
S+ DT V W + IS H R EA F M G P+ +T+V++LS C +
Sbjct: 102 SERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDV 161
Query: 97 -----------------NVMVSTALLDMYAKFGRMDLATVVFDVM--------------- 124
++ V AL+DMYA+ M+ A +FD M
Sbjct: 162 LLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGL 221
Query: 125 ------------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
R WTA+++G+V+ F EALE FR MQ S V D T++
Sbjct: 222 TRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMV 281
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
SV+ CA + L +G W+ Y+ +Q K + V N L+D+YS+ G IE A VF+ MH R
Sbjct: 282 SVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHR 341
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQY 285
+W +II+G AVNG+ EA+E F+ M GV +T DEV+F G LTAC+HAGL++ G ++
Sbjct: 342 DKFTWTAIILGLAVNGYGEEAIEMFHRM-IGVSETPDEVTFIGVLTACTHAGLVDKGREF 400
Query: 286 FDIMKKIYRVSPQIEHHGCI 305
F M++ Y ++P + H+GCI
Sbjct: 401 FLSMRETYNIAPNVVHYGCI 420
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 109/262 (41%), Gaps = 26/262 (9%)
Query: 50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------------- 95
I R C +A + RM G P TF LL A S
Sbjct: 13 EGIPRRCLVAAREDAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKF 72
Query: 96 ---NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD---FWTALLNGFVKRDYFEEALEY 149
N V+T+L+ YA G A + R D W AL++G + F EA
Sbjct: 73 GMGRNAHVATSLVTAYAAGGDGAAARALLS-ERERDTPVVWNALISGHNRCRRFGEACCS 131
Query: 150 FRVMQISGVEPDYLTIISVLNVCAN-VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M +G P +T +SVL+ C + +G+ +H V ++RV N L+D+Y+
Sbjct: 132 FVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYA 191
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+E A ++F M R++VSW S++ G G V EA + F M + D VS+T
Sbjct: 192 ECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMP----ERDTVSWTA 247
Query: 269 ALTACSHAGLIEDGLQYFDIMK 290
+ A + L+ F M+
Sbjct: 248 MIDGYVQAARFREALEMFREMQ 269
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 165/280 (58%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV------- 98
V WTS IS + ++ C EA L + +M G +P +T TL+S CA+ V
Sbjct: 146 VVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSH 205
Query: 99 ----------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++ +AL++MYAK G + A VFD + D W+AL+ G+VK + EA
Sbjct: 206 IREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEA 265
Query: 147 LEYFR-VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
L+ FR V S + P+ +TI++V++ CA + L G W+H Y+ + +V + N+L+D
Sbjct: 266 LQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLID 325
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
++S+ G I+ A+++F M + L+SWNS++ GFA++G EAL F LMQ + DE++
Sbjct: 326 MFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEIT 385
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G LTACSHAGL+++G + F ++ +Y V + EH+GC+
Sbjct: 386 FIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCM 425
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 133/258 (51%), Gaps = 21/258 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTN-PSHITFVTLLSGCA---DFPSNNVM-- 99
+ W S + S A +T M N P TF +LL GCA +F V+
Sbjct: 44 LTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHG 103
Query: 100 ------------VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+ T LL+MYA G + A +F+ M R WT++++G++K E
Sbjct: 104 QVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNE 163
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL ++ M+ G PD +T+ ++++ CA ++ LG+G+ +H ++ + D K + + L++
Sbjct: 164 ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVN 223
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEV 264
+Y++ G ++ ARQVF ++ + + +W+++I G+ N EAL+ F + G + +EV
Sbjct: 224 MYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEV 283
Query: 265 SFTGALTACSHAGLIEDG 282
+ ++AC+ G +E G
Sbjct: 284 TILAVISACAQLGDLETG 301
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 142/214 (66%), Gaps = 4/214 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF----WTALLNGFVKRDYFEEALEYFR 151
+N +V +L++MY K +D A VF+ M D WTA+++G+ + + +ALE+FR
Sbjct: 195 SNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFR 254
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
MQ+ G+EPD ++++SVL CA + L +G W+H Y K F N+ VCN L+++Y++ G
Sbjct: 255 RMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCG 314
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
I+ R++F +M +R ++SW+++IVG A +G EA+E F MQK + ++F G LT
Sbjct: 315 SIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLT 374
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
AC+HAGL+ +GL+YF+ MK+ Y + P +EH+GC+
Sbjct: 375 ACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCL 408
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 103/216 (47%), Gaps = 27/216 (12%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T WT+ +S + R GC +A F RM++ G P I+ V++L CA +
Sbjct: 229 TIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIH 288
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
N+ V AL++MYAK G +D +FD M+ D W+ ++ G
Sbjct: 289 IYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAR 348
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP--KQDF--KDNVRVC 200
EA+E F+ MQ + +EP +T + +L CA+ L GL RY K+D+ + V
Sbjct: 349 EAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGL---RYFESMKRDYNIEPGVEHY 405
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVS-WNSII 235
L+++ G ++ A ++ ++M ++ W S++
Sbjct: 406 GCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLL 441
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 97/197 (49%), Gaps = 9/197 (4%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
S + + T ++D+ +G + A ++F + + + A++ + + A+ ++
Sbjct: 88 SQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQ 147
Query: 153 M-----QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
M + + PD T V+ CA + +G +H +V K K N V N+L+++Y
Sbjct: 148 MLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMY 207
Query: 208 SRFGCIEFARQVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+ ++ A +VF+ M +R T+ SW +I+ G+A G +ALE+F MQ + DE+S
Sbjct: 208 VKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEIS 267
Query: 266 FTGALTACSHAGLIEDG 282
L C+ G +E G
Sbjct: 268 LVSVLPDCAQLGALELG 284
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 161/284 (56%), Gaps = 20/284 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + I+ + +SG EA F M+ P+ T VT+LS CA S
Sbjct: 226 VRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNW 285
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ + AL+DMY+K G +D A +F+ + D W ++ G+ +
Sbjct: 286 VRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNS 345
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-DNVRVCN 201
++EAL FR MQ S VEP+ +T +S+L CA + L +G W+H Y+ K+ N +
Sbjct: 346 YKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWT 405
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
+L+D+Y++ G IE A+QVF M ++L SWN++I G A++G ALE F M+ F+
Sbjct: 406 SLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEP 465
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSHAGL+E G Q F M + Y +SP+++H+GC+
Sbjct: 466 DDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCM 509
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 136/285 (47%), Gaps = 50/285 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W + I + S + A + RM L G P+ TF LL CA +
Sbjct: 100 WNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVL 159
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFD-----------------VMRGC------ 127
++ V T+L++MYA+ G + A +VF +RGC
Sbjct: 160 KLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARR 219
Query: 128 ----------DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
W A++ G+ + FEEAL +F+ M+ + V P+ T+++VL+ CA +
Sbjct: 220 LFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGS 279
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
L +G W+ ++ N+R+ N L+D+YS+ G ++ AR +F+ + ++ ++SWN +I G
Sbjct: 280 LELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGG 339
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
++ EAL F MQ+ + ++V+F L AC++ G ++ G
Sbjct: 340 YSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG 384
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 161/284 (56%), Gaps = 20/284 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + I+ + +SG EA F M+ P+ T VT+LS CA S
Sbjct: 226 VRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNW 285
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ + AL+DMY+K G +D A +F+ + D W ++ G+ +
Sbjct: 286 VRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNS 345
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-DNVRVCN 201
++EAL FR MQ S VEP+ +T +S+L CA + L +G W+H Y+ K+ N +
Sbjct: 346 YKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWT 405
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
+L+D+Y++ G IE A+QVF M ++L SWN++I G A++G ALE F M+ F+
Sbjct: 406 SLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEP 465
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSHAGL+E G Q F M + Y +SP+++H+GC+
Sbjct: 466 DDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCM 509
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 136/285 (47%), Gaps = 50/285 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W + I + S + A + RM L G P+ TF LL CA +
Sbjct: 100 WNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVL 159
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFD-----------------VMRGC------ 127
++ V T+L++MYA+ G + A +VF +RGC
Sbjct: 160 KLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARR 219
Query: 128 ----------DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
W A++ G+ + FEEAL +F+ M+ + V P+ T+++VL+ CA +
Sbjct: 220 LFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGS 279
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
L +G W+ ++ N+R+ N L+D+YS+ G ++ AR +F+ + ++ ++SWN +I G
Sbjct: 280 LELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGG 339
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
++ EAL F MQ+ + ++V+F L AC++ G ++ G
Sbjct: 340 YSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG 384
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 161/279 (57%), Gaps = 21/279 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSN----- 96
V W S IS ++G EA F RM + PS T V++L+ CA D +
Sbjct: 171 VVSWNSLISGFMKAGHFDEAISVFFRMDV---EPSMTTLVSVLAACARNGDLCTGKGIHG 227
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
N+++ A+LDMY K G A +FD + D WT ++ G V+ D+ +++
Sbjct: 228 VIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQS 287
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F +M+ G+ PD + + SVL+ CA++ TL G W+H Y+ ++ K ++ + ++D+
Sbjct: 288 LELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDM 347
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ GCIE A ++F M +R +WN+++ G A++G V EAL F +M K +E++F
Sbjct: 348 YAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITF 407
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTAC H GL+++G +YFD M K+Y + P++EH+GC+
Sbjct: 408 LAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCM 446
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 23/234 (9%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSN-----------------NVMVSTALLDMYAK 110
+ RM G P TF LL C++F + + V +L+ Y
Sbjct: 93 YRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGA 152
Query: 111 FGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G A VFD M R W +L++GF+K +F+EA+ F M VEP T++SV
Sbjct: 153 CGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRMD---VEPSMTTLVSV 209
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L CA L G +H + ++ FK N+ + N ++D+Y + GC A+ +F + R +
Sbjct: 210 LAACARNGDLCTGKGIHGVIERR-FKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDI 268
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
VSW +I G + ++LE F++M+ D + T L+AC+ G ++ G
Sbjct: 269 VSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFG 322
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 3/167 (1%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
+ +L+NG+V ++ + A+ +R M G PD T +L C+N G +H V
Sbjct: 73 FNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVV 132
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
K + V N+L+ Y G A +VF M R +VSWNS+I GF G EA+
Sbjct: 133 KLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAIS 192
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
F M + + L AC+ G + G ++++ ++V+
Sbjct: 193 VFFRMD---VEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVN 236
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
T W + + G + EA F M + G P+ ITF+ +L+ C L
Sbjct: 369 TFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACC---------HCGL 419
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
+D K+ D + +++++ + + +++ F + EEA+E R M + +PD L
Sbjct: 420 VDEGRKY--FDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPM---KPDVLI 474
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
+LN C V + + + Y+ + D D+
Sbjct: 475 WGLLLNACTTVGNIELSHRIQDYILELDHDDS 506
>gi|125590818|gb|EAZ31168.1| hypothetical protein OsJ_15267 [Oryza sativa Japonica Group]
Length = 586
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 165/296 (55%), Gaps = 27/296 (9%)
Query: 34 QTNNSKSTIDT-----TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS 88
Q +++ D V WT+ +S R G +EA M + P+ +T ++L
Sbjct: 168 QCGDARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMDV---TPNEVTLASVLV 224
Query: 89 GCADFPSN-----------------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF-- 129
C + + N++V ALLDMY K ++DLA VFD++ D
Sbjct: 225 ACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVS 284
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
WT +++G V+ EALE F MQISGV+PD + + +VL+ CA++ L G W+H Y+
Sbjct: 285 WTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIE 344
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
++ + +V V +++D+Y + GC++ A +FQ M + + SWN++I GFA++G EAL+
Sbjct: 345 RKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALD 404
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F+ M +EV+F L AC H+GL+++G Q F++M K Y++SP +H+GC+
Sbjct: 405 CFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCM 460
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 156 SGVEPDYLTIISVLNVCANVRT-LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+G PD T+ + L CA + L G H K F V V N L+ Y G
Sbjct: 111 AGARPDGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCG 170
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
AR+VF M +R +VSW +++ F G EAL M +EV+ L AC
Sbjct: 171 DARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMD---VTPNEVTLASVLVACG 227
Query: 275 HAGLIEDG 282
+ G G
Sbjct: 228 NLGTARAG 235
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 160/279 (57%), Gaps = 22/279 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V WT+ +S R G +EA M + P+ +T ++L C + +
Sbjct: 185 VSWTALLSAFTRGGMFMEALGVLAEMDV---TPNEVTLASVLVACGNLGTARAGKAVHGW 241
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
N++V ALLDMY K ++DLA VFD++ D WT +++G V+ EA
Sbjct: 242 YFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEA 301
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F MQISGV+PD + + +VL+ CA++ L G W+H Y+ ++ + +V V +++D+
Sbjct: 302 LEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDM 361
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + GC++ A +FQ M + + SWN++I GFA++G EAL+ F+ M +EV+F
Sbjct: 362 YVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTF 421
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L AC H+GL+++G Q F++M K Y++SP +H+GC+
Sbjct: 422 ITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCM 460
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 156 SGVEPDYLTIISVLNVCANVRT-LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+G PD T+ + L CA + L G H K F V V N L+ Y G
Sbjct: 111 AGARPDGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCG 170
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
AR+VF M +R +VSW +++ F G EAL M +EV+ L AC
Sbjct: 171 DARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMD---VTPNEVTLASVLVACG 227
Query: 275 HAGLIEDG 282
+ G G
Sbjct: 228 NLGTARAG 235
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 160/280 (57%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WT+ I + + G E F M +T V +LS CA
Sbjct: 192 VSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRY 251
Query: 95 ----SN---NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
SN +V V AL+DMY K G + A VF M + W ++++G ++ F+E
Sbjct: 252 IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKE 311
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+L FR MQ GV+PD +T+++VLN CAN+ L +G W+H Y+ + + + + N L+D
Sbjct: 312 SLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVD 371
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G I+ A VFQ M+++ + S+ ++IVG A++G G+AL+ F+ M K + DEV+
Sbjct: 372 MYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVT 431
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G LTACSH GL+E+G +YF+ M IY + PQ+EH+GC+
Sbjct: 432 FVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCM 471
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 121/241 (50%), Gaps = 20/241 (8%)
Query: 62 LEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTAL 104
+E + + +M G P + T +L CA+ + ++V VS L
Sbjct: 107 IEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTL 166
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+ MYA + A VFD D WT ++ G+VK + E + F M ++ D
Sbjct: 167 MRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADG 226
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
+T++ VL+ CA + L +G +HRY+ + + +V V N L+D+Y + G FAR+VFQ
Sbjct: 227 MTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQ 286
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
M + +VSWNS+I G A G E+L F MQ+ K D+V+ L +C++ G++E
Sbjct: 287 EMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLEL 346
Query: 282 G 282
G
Sbjct: 347 G 347
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 165/280 (58%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV------- 98
V WTS IS + ++ C EA L + +M G +P +T TL+S CA+ V
Sbjct: 146 VVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSH 205
Query: 99 ----------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++ +AL++MYAK G + A VFD + D W+AL+ G+VK + EA
Sbjct: 206 IREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEA 265
Query: 147 LEYFR-VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
L+ FR V S + P+ +TI++V++ CA + L G W+H Y+ + +V + N+L+D
Sbjct: 266 LQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLID 325
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
++S+ G I+ A+++F M + L+SWNS++ G A++G EAL F+LMQ + DE++
Sbjct: 326 MFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEIT 385
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G LTACSHAGL+++G + F ++ +Y V + EH+GC+
Sbjct: 386 FIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCM 425
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 133/258 (51%), Gaps = 21/258 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTN-PSHITFVTLLSGCA---DFPSNNVM-- 99
+ W S + S A +T M N P TF +LL GCA +F V+
Sbjct: 44 LTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHG 103
Query: 100 ------------VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+ T LL+MYA G + A +F+ M R WT++++G++K E
Sbjct: 104 QVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNE 163
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL ++ M+ G PD +T+ ++++ CA ++ LG+G+ +H ++ + D K + + L++
Sbjct: 164 ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVN 223
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEV 264
+Y++ G ++ ARQVF ++ + + +W+++I G+ N EAL+ F + G + +EV
Sbjct: 224 MYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEV 283
Query: 265 SFTGALTACSHAGLIEDG 282
+ ++AC+ G +E G
Sbjct: 284 TILAVISACAQLGDLETG 301
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 5/158 (3%)
Query: 118 TVVFDVMRGCDFWTALLNGFVKRDYFEEALE-YFRVMQISGVEPDYLTIISVLNVCANVR 176
T V DV+ W ++L FV + AL+ Y +++ S PD T S+L CA +
Sbjct: 38 TRVLDVLT----WNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLL 93
Query: 177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIV 236
+G +H V K ++ + TL+++Y+ G ++ AR +F+RM R V W S+I
Sbjct: 94 EFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMIS 153
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
G+ N EAL + M++ F DEV+ ++AC+
Sbjct: 154 GYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 160/284 (56%), Gaps = 21/284 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---------- 91
I W + I + + EA F RM++ G P+ IT V++L CA
Sbjct: 284 IRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQ 343
Query: 92 --------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRD 141
F SN+V V AL++MYAK G ++ A +F+ M + W A+++G+ +
Sbjct: 344 IHGYAIRSGFESNDV-VGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHG 402
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
+ EAL F MQ G++PD I+SVL CA+ L G +H Y + F+ NV V
Sbjct: 403 HPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGT 462
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+D+Y++ G + A+++F+RM ++ +VSW ++I+ + ++G +AL F+ MQ+ K
Sbjct: 463 GLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKL 522
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D ++FT LTACSHAGL++ GLQYF MK Y ++P++EH+ C+
Sbjct: 523 DHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACL 566
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 151/289 (52%), Gaps = 23/289 (7%)
Query: 19 QNRNQNLKKRPQISIQTNNSKSTI----DTTVQWTSSISRHCRSGCILEAALEFTRMRLY 74
Q R +K ++S N ++ T + V W +I + ++G +A + +M+
Sbjct: 55 QLRRNKVKTTREVSACANQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRT 114
Query: 75 GTNPSHITFVTLLSGC---ADFPS--------------NNVMVSTALLDMYAKFGRMDLA 117
G NP + F++++ C +D + ++V+V TAL MY K G ++ A
Sbjct: 115 GINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENA 174
Query: 118 TVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
VFD M D W A++ G+ + EAL F MQ++G++P+ T++SV+ VCA++
Sbjct: 175 RQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHL 234
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
L G +H Y + + +V V N L+++Y++ G + A ++F+RM R + SWN+II
Sbjct: 235 LALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAII 294
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
G+++N EAL +FN MQ K + ++ L AC+H +E G Q
Sbjct: 295 GGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQ 343
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/281 (35%), Positives = 157/281 (55%), Gaps = 24/281 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFP-------- 94
+ WT+ I + + G EA F RM +T V +LS C+ DF
Sbjct: 205 ISWTTLIQAYSKMGYPSEAIAAFFRMN---CTADRMTLVVVLSACSQLGDFTLGKKILAY 261
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
++V + ALLDMY K G+ LA +F +M + W ++++G + F+
Sbjct: 262 MDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFK 321
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL FR MQ G++PD +T++ VLN CAN+ L +G W+H Y+ K K + V N L+
Sbjct: 322 EALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALV 381
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G I+ A VFQ M + + S+ ++IVGFA++G AL F+ M + + D V
Sbjct: 382 DMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHV 441
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ G L+ACSHAGL+E+G ++F M ++Y + PQ EH+GC+
Sbjct: 442 TLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCM 482
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTALLDMYAK 110
+ +M L G +P T LL C+ S+N+ V L+ YA
Sbjct: 126 YRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAV 185
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G ++ VFD D WT L+ + K Y EA+ F M + D +T++ V
Sbjct: 186 SGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTA---DRMTLVVV 242
Query: 169 LNVCANVRTLGIGLWMHRYVPKQ--DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
L+ C+ + +G + Y+ D +V + N L+D+Y + G ARQ+F M +
Sbjct: 243 LSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVK 302
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
LVSWNS+I G A G EAL F MQ K D V+ G L +C++ G +E G
Sbjct: 303 NLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELG 358
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 94/210 (44%), Gaps = 36/210 (17%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD--------- 92
+ V W S IS G EA F RM+ G P +T V +L+ CA+
Sbjct: 301 VKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKW 360
Query: 93 ---FPSNNVM-----VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+ N M V+ AL+DMYAK G +D A +VF M+ D +TA++ GF
Sbjct: 361 VHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGK 420
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+ AL F M GV PD++T++ VL+ C++ L G ++ F+D R+ +
Sbjct: 421 ADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEG--------RRHFQDMSRLYHL 472
Query: 203 ---------LMDVYSRFGCIEFARQVFQRM 223
++D+ R G I A +M
Sbjct: 473 QPQTEHYGCMVDLLGRAGLISEAEAFTNKM 502
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
F +R M + G+ PD T+ +L C+ L +H + K N+ V NT
Sbjct: 119 FTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNT 178
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
LM Y+ G IE +VF + L+SW ++I ++ G+ EA+ F M D
Sbjct: 179 LMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMN---CTAD 235
Query: 263 EVSFTGALTACSHAGLIEDG---LQYFD 287
++ L+ACS G G L Y D
Sbjct: 236 RMTLVVVLSACSQLGDFTLGKKILAYMD 263
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 157/284 (55%), Gaps = 25/284 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + I+ + +SG EA FTRM+ +P+ T V++LS C S
Sbjct: 225 VSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSW 284
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
N+ + AL+DMY+K G + A +FD M D W ++ G+ +EEA
Sbjct: 285 VRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEA 344
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-----DNVRVCN 201
L F VM V P+ +T ++VL CA++ L +G W+H Y+ K + K +NV +
Sbjct: 345 LVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDK-NLKGTGNVNNVSLWT 403
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
+++ +Y++ GC+E A QVF+ M R+L SWN++I G A+NG AL F M F+
Sbjct: 404 SIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQP 463
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+AC+ AG +E G +YF M K Y +SP+++H+GC+
Sbjct: 464 DDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCM 507
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 105/183 (57%), Gaps = 2/183 (1%)
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVE 159
TAL+ Y G +D A +FD + D W A++ G+V+ FEEAL F MQ + V
Sbjct: 197 TALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVS 256
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
P+ T++SVL+ C ++R+L +G W+ +V + F N+++ N L+D+YS+ G I AR++
Sbjct: 257 PNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKL 316
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F M + ++ WN++I G+ EAL F +M + ++V+F L AC+ G +
Sbjct: 317 FDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGAL 376
Query: 280 EDG 282
+ G
Sbjct: 377 DLG 379
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 92/234 (39%), Gaps = 25/234 (10%)
Query: 84 VTLLSGCADFPS--------------NNVMVSTALLDMYAKFGRMDL--ATVVFDVMR-- 125
+ LL+ C D PS N + + L++ A DL A +F +
Sbjct: 29 LNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQ 88
Query: 126 --GCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
W L+ +L F M SG+ P+ T S+ CA +
Sbjct: 89 PPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQ 148
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H + K + V +L+ +YS+ G + AR VF + R VS+ ++I G+ G
Sbjct: 149 LHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGH 208
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSP 297
V +A F+ + D VS+ + +G E+ L F M++ VSP
Sbjct: 209 VDDARRLFD----EIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEA-DVSP 257
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 152/271 (56%), Gaps = 29/271 (10%)
Query: 42 IDTTVQWTSSISR-----HCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN 96
+D ++ T+ I +C+ GC+ +A F M +
Sbjct: 242 VDAELEMTTKIGNALLDMYCKCGCVDKARAIFDEM----------------------GNK 279
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
NV+ T+++ YA G +D A +F+ +R WTA++NG+V+ + F+EAL+ FR MQ
Sbjct: 280 NVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQ 339
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
I + PD ++++L CA L G W+H Y+ + + V L+DVY++ GC+E
Sbjct: 340 IQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVE 399
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +VF M +R SW S+I G AVNG +AL++F+ M++ F+ D+++F G LTAC+
Sbjct: 400 KALEVFYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDITFIGVLTACN 459
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H GL+E+G +YFD M K Y++ P+ EH+ C+
Sbjct: 460 HGGLVEEGRRYFDSMTKTYKIQPKSEHYSCL 490
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 123/248 (49%), Gaps = 24/248 (9%)
Query: 68 FTRMRLYGTNPSHITFVTLLS--GCADFPSN-------------NVMVSTALLDMYAKFG 112
F+ +R G NP + T + GC + V +++ MY G
Sbjct: 104 FSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSGFDACVCNSVMGMYGALG 163
Query: 113 RMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ-ISGVEPDYLTIISVL 169
+M++A VFD + D W L++ +V FE+A+ FR M+ S ++ D T++S L
Sbjct: 164 KMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTL 223
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
+ C+ +R +G +HRYV + + ++ N L+D+Y + GC++ AR +F M + ++
Sbjct: 224 SACSVLRNQEVGEEIHRYVDAE-LEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVI 282
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
W S++ G+A NG + EA E F ++ + D V +T + L ++ L+ F M
Sbjct: 283 CWTSMVSGYASNGSLDEARELF---ERSPVR-DIVLWTAMINGYVQFNLFDEALKLFRKM 338
Query: 290 KKIYRVSP 297
+I R+ P
Sbjct: 339 -QIQRLRP 345
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
+ ++ K + F + L F ++ G+ PD T+ V + + G +H YV
Sbjct: 83 MYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYV 142
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K F + VCN++M +Y G +E A++VF + +R +VSWN +I + + +A+
Sbjct: 143 VKSGF--DACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAI 200
Query: 249 EYFNLMQK-GVFKTDEVSFTGALTACS 274
F M++ K DE + L+ACS
Sbjct: 201 AVFRRMRRESNLKADEATVVSTLSACS 227
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 19/154 (12%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD----- 92
+S + V WT+ I+ + + EA F +M++ P + VTLL GCA
Sbjct: 305 ERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALE 364
Query: 93 --------FPSNNV----MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFV 138
N++ +V TAL+D+YAK G ++ A VF M+ D WT+++ G
Sbjct: 365 QGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLA 424
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC 172
+AL++F M+ +G PD +T I VL C
Sbjct: 425 VNGMTSKALDFFSQMEEAGFRPDDITFIGVLTAC 458
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 159/281 (56%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSN---- 96
+ V W + I + + EA F RM + P+ IT V +L+ CA D +
Sbjct: 202 SVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVH 261
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ ++++AL+D+Y K G LA +F+ M + W ++NG V+ +E
Sbjct: 262 KYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYE 321
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL F MQ+SGV+ D +T+ S+L C ++ L +G W+H Y+ K+ + +V + L+
Sbjct: 322 EALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALV 381
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G IE A +VFQ M ++ +++W ++IVG A+ G +ALE F+ MQ K D +
Sbjct: 382 DMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAI 441
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L ACSHAGL+ +G+ YF+ M Y + P IEH+GC+
Sbjct: 442 TFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCM 482
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 102/194 (52%), Gaps = 9/194 (4%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVKRDYFEEALEYF 150
F ++ ++ AL D G + A +VF+ + +T +++ G+ ++ +A+ ++
Sbjct: 73 FSASKIVAFCALHDS----GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFY 128
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
++M + G++PD T S+ C L G +H + K F + + NTLM++YS
Sbjct: 129 QLMMLQGLDPDRFTFPSLFKSCG---VLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNC 185
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
GC+ AR+VF +M +++VSW ++I +A EA++ F M+ K +E++ L
Sbjct: 186 GCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVL 245
Query: 271 TACSHAGLIEDGLQ 284
TAC+ + +E Q
Sbjct: 246 TACARSRDLETAKQ 259
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 154/310 (49%), Gaps = 50/310 (16%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTN-PSHITFVTLLSGCA------------ 91
V W IS + R EA + RM++ P+ T V+ LS CA
Sbjct: 174 AVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIH 233
Query: 92 DFPSNNV----MVSTALLDMYAKFGRMDLATVVFDVM----------------------- 124
D+ +N + ++ ALLDMY K G + +A +FD M
Sbjct: 234 DYIANELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQ 293
Query: 125 ----------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
R WTA++NG+V+ ++FE+A+ F MQI GVEPD ++++L CA
Sbjct: 294 ARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQ 353
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ L G W+H Y+ + K + V L+++Y++ GCIE + ++F + SW SI
Sbjct: 354 LGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSI 413
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I G A+NG EALE F MQ K D+++F L+AC HAGL+E+G + F M IY
Sbjct: 414 ICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYH 473
Query: 295 VSPQIEHHGC 304
+ P +EH+GC
Sbjct: 474 IEPNLEHYGC 483
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 35/217 (16%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQI-S 156
V +L+DMYA+ G ++ T VF+ M R W +++G+V+ FEEA++ +R MQ+ S
Sbjct: 145 VCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMES 204
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
+P+ T++S L+ CA +R L +G +H Y+ + + N L+D+Y + GC+ A
Sbjct: 205 NEKPNEATVVSTLSACAVLRNLELGKEIHDYIANE-LDLTPIMGNALLDMYCKCGCVSVA 263
Query: 217 RQVFQRMHKRTLVSWNSIIVGFA--------------------------VNGFV-----G 245
R++F M + + W S++ G+ +NG+V
Sbjct: 264 REIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFE 323
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+A+ F MQ + D+ LT C+ G +E G
Sbjct: 324 DAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQG 360
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 1/170 (0%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
+ ++ FVKR A+ F+ ++ GV PD T VL + + G +H +V
Sbjct: 75 IYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFV 134
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K + + VCN+LMD+Y+ G +E QVF+ M +R VSWN +I G+ EA+
Sbjct: 135 VKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAV 194
Query: 249 EYFNLMQ-KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSP 297
+ + MQ + K +E + L+AC+ +E G + D + ++P
Sbjct: 195 DVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTP 244
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 138/204 (67%), Gaps = 2/204 (0%)
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L+ + + G+M A +F+ M+ WTA+++G+ + + +ALE+FR MQ+ G+EPD
Sbjct: 189 LISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPD 248
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
++++SVL CA + L +G W+H Y K F N+ VCN L+++Y++ G I+ R++F
Sbjct: 249 EISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFD 308
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
+M++R ++SW+++IVG A +G EA+E F MQK + + ++F G L+AC+HAGL+ +
Sbjct: 309 QMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNE 368
Query: 282 GLQYFDIMKKIYRVSPQIEHHGCI 305
GL+YF+ MK+ Y + P +EH+GC+
Sbjct: 369 GLRYFESMKRDYNIEPGVEHYGCL 392
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 27/216 (12%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T WT+ +S + R GC +A F RM++ G P I+ V++L CA +
Sbjct: 213 TIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIH 272
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
N+ V AL++MYAK G +D +FD M D W+ ++ G
Sbjct: 273 FYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAH 332
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP--KQDF--KDNVRVC 200
EA+E F+ MQ + +EP+ +T + +L+ CA+ L GL RY K+D+ + V
Sbjct: 333 EAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGL---RYFESMKRDYNIEPGVEHY 389
Query: 201 NTLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSII 235
L+++ G ++ A ++ ++M K W S++
Sbjct: 390 GCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLL 425
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 31/154 (20%)
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS----------- 208
PD T V+ CA + +G +H +V K K N V N+L+++Y
Sbjct: 115 PDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKV 174
Query: 209 --------------------RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
R G + AR +F+ M +T+ SW +I+ G+A G +AL
Sbjct: 175 FEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADAL 234
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
E+F MQ + DE+S L AC+ G +E G
Sbjct: 235 EFFRRMQMVGIEPDEISLVSVLPACAQLGALELG 268
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 159/263 (60%), Gaps = 25/263 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V W + IS +C SG + +A + F M + +++ T++SG
Sbjct: 194 VSWNTLISGYCFSGMVDKARMVFDGM----MEKNLVSWSTMISG---------------- 233
Query: 106 DMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISG-VEPDY 162
YA+ G ++ A +F+ MR W A++ G+ + + + +A+E FR MQ G + P+
Sbjct: 234 --YARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPND 291
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
+T++SVL+ CA++ L +G W+HR++ + + + + N L D+Y++ GC+ A+ VF
Sbjct: 292 VTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHE 351
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
MH+R ++SW+ II+G A+ G+ EA +F M + + +++SF G LTAC+HAGL++ G
Sbjct: 352 MHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKG 411
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
L+YFD+M ++Y ++P+IEH+GC+
Sbjct: 412 LEYFDMMPQVYGITPKIEHYGCV 434
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 6/162 (3%)
Query: 130 WTALLNGFVKRDYFEEALEYF--RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
+ ALL F + + + + YF +++ + PD T SVL CA + + G +H +
Sbjct: 93 YNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCF 152
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
V K + N+ V N+L+D+Y + GC A+++F M R +VSWN++I G+ +G V +A
Sbjct: 153 VTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKA 212
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
F+ G+ + + VS++ ++ + G +E+ Q F+ M
Sbjct: 213 RMVFD----GMMEKNLVSWSTMISGYARVGNLEEARQLFENM 250
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 162/315 (51%), Gaps = 50/315 (15%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTN-PSHITFVTLLSGC--------A 91
T +V W IS + R +A F M+ G P T V+ LS C
Sbjct: 259 TTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELG 318
Query: 92 DFPSNNVM--------VSTALLDMYAKFGRMDLATVVFDVM------------------- 124
D N V + ALLDMYAK G +++A +FD M
Sbjct: 319 DEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCG 378
Query: 125 --------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN 170
R WTA++NG+V+ +F++A+ FR MQI ++PD T++++L
Sbjct: 379 DLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLT 438
Query: 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS 230
CA + L G W+H Y+ + +V V L+++YS+ GC++ + ++F + + S
Sbjct: 439 GCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTAS 498
Query: 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
W SII G A+NG EAL F+ M++ K D+++F G L+ACSH GL+E+G ++F+ MK
Sbjct: 499 WTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMK 558
Query: 291 KIYRVSPQIEHHGCI 305
K++R+ P++EH+GC+
Sbjct: 559 KVHRIEPKVEHYGCV 573
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 35/217 (16%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
V +L+DMY + ++ A +FD M R W +++G+V+ FE+A+ FR MQ G
Sbjct: 234 VYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEG 293
Query: 158 VE-PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
E PD T++S L+ C ++ L +G +H YV K+ R+ N L+D+Y++ GC+ A
Sbjct: 294 NEKPDEATVVSTLSACTALKNLELGDEIHNYVRKE-LGFTTRIDNALLDMYAKCGCLNIA 352
Query: 217 RQVFQRMHKRTLVSWNSIIVGF--------------------------AVNGFV-----G 245
R +F M + ++ W S+I G+ +NG+V
Sbjct: 353 RNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFD 412
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+A+ F MQ K D+ + LT C+ G +E G
Sbjct: 413 DAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQG 449
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 32/211 (15%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--- 95
KS + V WT+ I+ + + +A F M++ P T VTLL+GCA +
Sbjct: 389 KSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQ 448
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
+V+V TAL++MY+K G +D + +F + D WT+++ G
Sbjct: 449 GKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAM 508
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-------LWMHRYVPKQD 192
EAL F M+ G +PD +T I VL+ C++ + G +HR PK
Sbjct: 509 NGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPK-- 566
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
V ++D+ R G ++ A ++ Q +
Sbjct: 567 ----VEHYGCVIDLLGRAGLLDEAEELIQEI 593
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 120/269 (44%), Gaps = 19/269 (7%)
Query: 35 TNNSKSTIDTTVQWTSSISRHCRS-GCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF 93
+++S S + T + R+C+S + + + R+ L G T L++ CAD
Sbjct: 86 SSSSASNLQTNKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRD---TINKLMAFCADS 142
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVM 153
N+ + + + D + V++VM + + KR + L F+ +
Sbjct: 143 SLGNLRYAEKIFNYV-----QDPSLFVYNVM---------VKIYAKRGILRKVLLLFQQL 188
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ G+ PD T VL +R + G + ++ K + V N+L+D+Y +
Sbjct: 189 REDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNV 248
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGALTA 272
E A+++F M R VSWN +I G+ +A+ F MQ+ G K DE + L+A
Sbjct: 249 ENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSA 308
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEH 301
C+ +E G + + ++K + +I++
Sbjct: 309 CTALKNLELGDEIHNYVRKELGFTTRIDN 337
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 162/315 (51%), Gaps = 50/315 (15%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLLSGC--------A 91
T +V W IS + R +A F M+ G P T V+ LS C
Sbjct: 305 TTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELG 364
Query: 92 DFPSNNVM--------VSTALLDMYAKFGRMDLATVVFDVM------------------- 124
D N V + ALLDMYAK G +++A +FD M
Sbjct: 365 DEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCG 424
Query: 125 --------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN 170
R WTA++NG+V+ +F++A+ FR MQI V+PD T++++L
Sbjct: 425 DLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLT 484
Query: 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS 230
CA + L G W+H Y+ + +V V L+++YS+ GC++ + ++F + + S
Sbjct: 485 GCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTAS 544
Query: 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
W SII G A+NG EAL F+ M++ K D+++F G L+ACSH GL+E+G ++F+ MK
Sbjct: 545 WTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMK 604
Query: 291 KIYRVSPQIEHHGCI 305
K++R+ P++EH+GC+
Sbjct: 605 KVHRIEPKVEHYGCV 619
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 35/217 (16%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
V +L+DMY + ++ A +FD M R W +++G+V+ FE+A+ FR MQ G
Sbjct: 280 VYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEG 339
Query: 158 VE-PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
E PD T++S L+ C ++ L +G +H YV K+ R+ N L+D+Y++ GC+ A
Sbjct: 340 NEKPDEATVVSTLSACTALKNLELGDEIHNYVRKE-LGFTTRIDNALLDMYAKCGCLNIA 398
Query: 217 RQVFQRMHKRTLVSWNSIIVGF--------------------------AVNGFV-----G 245
R +F M + ++ W S+I G+ +NG+V
Sbjct: 399 RNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFD 458
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+A+ F MQ K D+ + LT C+ G +E G
Sbjct: 459 DAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQG 495
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 32/211 (15%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--- 95
KS + V WT+ I+ + + +A F M++ P T VTLL+GCA +
Sbjct: 435 KSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQ 494
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
+V+V TAL++MY+K G +D + +F + D WT+++ G
Sbjct: 495 GKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAM 554
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW-------MHRYVPKQD 192
EAL F M+ G +PD +T I VL+ C++ + G +HR PK
Sbjct: 555 NGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPK-- 612
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
V ++D+ R G ++ A ++ Q +
Sbjct: 613 ----VEHYGCVIDLLGRAGLLDEAEELIQEI 639
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 15/228 (6%)
Query: 75 GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALL 134
G T L++ CAD N+ + + + Y + D + V++VM +
Sbjct: 170 GLEGDRDTINKLMAFCADSSLGNLRYAEKIFN-YVQ----DPSLFVYNVM---------V 215
Query: 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK 194
+ KR + L F+ ++ G+ PD T VL +R + G + ++ K
Sbjct: 216 KMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMD 275
Query: 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+ V N+L+D+Y +E A+++F M R VSWN +I G+ +A+ F M
Sbjct: 276 LDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREM 335
Query: 255 QK-GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEH 301
Q+ G K DE + L+AC+ +E G + + ++K + +I++
Sbjct: 336 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDN 383
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 163/284 (57%), Gaps = 23/284 (8%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---------- 91
+ V WT IS + R+G EA F RM + P+ TFV++L C
Sbjct: 97 VRDVVSWTGVISGYVRAGLFDEAVGLFLRMDV---EPNAATFVSVLVACGRKGYLSVGKG 153
Query: 92 ----DFPSN---NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
F S + VS AL+DMY K G + A VFD + D WT++++G V+ +
Sbjct: 154 IHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNC 213
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+EALE F+ MQ SG+EPD + + SVL+ CA + L G W+H ++ ++ K ++++
Sbjct: 214 PKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTA 273
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
++D+Y++ GCIE + Q+F M + +++WN+++ G A++G + LE F M + + +
Sbjct: 274 MVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPN 333
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMK-KIYRVSPQIEHHGCI 305
EV+F LTAC H GL+ +G QYF+ MK + Y + P++EH+GC+
Sbjct: 334 EVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCM 377
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 111/238 (46%), Gaps = 22/238 (9%)
Query: 64 AALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLD 106
A L + R+ G P TF +L CA F N+ V +L+
Sbjct: 18 AFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVIIKMGFVCNIYVENSLVH 77
Query: 107 MYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
Y+ R A+ VFD M R WT +++G+V+ F+EA+ F M VEP+ T
Sbjct: 78 FYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRMD---VEPNAAT 134
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
+SVL C L +G +H K F + V N LMD+Y + GC+ A+QVF +
Sbjct: 135 FVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELA 194
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
++ +VSW SII G EALE F MQ + D + T L+AC+ G ++ G
Sbjct: 195 EKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYG 252
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 9/156 (5%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
+ AL++G+ D + A +R + G PD T +VL CA +G G +H +
Sbjct: 2 FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61
Query: 190 KQDFKDNVRVCNTLMDVYS---RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
K F N+ V N+L+ YS RFG A +VF M R +VSW +I G+ G E
Sbjct: 62 KMGFVCNIYVENSLVHFYSVCKRFG---DASRVFDEMLVRDVVSWTGVISGYVRAGLFDE 118
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
A+ F M + + +F L AC G + G
Sbjct: 119 AVGLFLRMD---VEPNAATFVSVLVACGRKGYLSVG 151
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 136/204 (66%), Gaps = 2/204 (0%)
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L+ + + G+M A +F+ M+ WTA+++G+ + + +ALE+FR MQ+ G+EPD
Sbjct: 189 LISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPD 248
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
++++SVL CA + L +G W+H Y K F N+ VCN L+++Y++ G I+ R++F
Sbjct: 249 EISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFD 308
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
+M +R ++SW+++IVG A +G EA+E F MQK + ++F G LTAC+HAGL+ +
Sbjct: 309 QMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNE 368
Query: 282 GLQYFDIMKKIYRVSPQIEHHGCI 305
GL+YF+ MK+ Y + P +EH+GC+
Sbjct: 369 GLRYFESMKRDYNIEPGVEHYGCL 392
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 103/216 (47%), Gaps = 27/216 (12%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T WT+ +S + R GC +A F RM++ G P I+ V++L CA +
Sbjct: 213 TIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIH 272
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
N+ V AL++MYAK G +D +FD M+ D W+ ++ G
Sbjct: 273 IYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAR 332
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP--KQDF--KDNVRVC 200
EA+E F+ MQ + +EP +T + +L CA+ L GL RY K+D+ + V
Sbjct: 333 EAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGL---RYFESMKRDYNIEPGVEHY 389
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVS-WNSII 235
L+++ G ++ A ++ ++M ++ W S++
Sbjct: 390 GCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLL 425
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 38/226 (16%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
S + + T ++D+ +G + A ++F + + + A++ + + A+ ++
Sbjct: 43 SQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQ 102
Query: 153 M-----QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
M + + PD T V+ CA + +G +H +V K K N V N+L+++Y
Sbjct: 103 MLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMY 162
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWN-------------------------------SIIV 236
+ ++ A +VF+ M +R VSWN +I+
Sbjct: 163 VKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVS 222
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
G+A G +ALE+F MQ + DE+S L C+ G +E G
Sbjct: 223 GYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELG 268
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 142/211 (67%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V+ +LL YA+ G+M A +F +M + WTA+++G+ + EA+++FR MQ
Sbjct: 174 DVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQ 233
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
++G+EPD +++ISVL CA + +L +G W+H Y ++ F VCN L+++YS+ G I
Sbjct: 234 LAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVIS 293
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A Q+F +M + ++SW+++I G+A +G A+E FN MQ+ K + ++F G L+ACS
Sbjct: 294 QAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACS 353
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H G+ ++GL+YFD+M++ Y++ P+IEH+GC+
Sbjct: 354 HVGMWQEGLRYFDMMRQDYQIEPKIEHYGCL 384
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 30/205 (14%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T V WT+ IS + GC +EA F M+L G P I+ +++L CA S
Sbjct: 205 TIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIH 264
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
V AL++MY+K G + A +F M G D W+ +++G+
Sbjct: 265 LYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAH 324
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH--RY--VPKQDFKDNVRV- 199
A+E F MQ + V+P+ +T + +L+ C++V G+W RY + +QD++ ++
Sbjct: 325 GAIETFNEMQRAKVKPNGITFLGLLSACSHV-----GMWQEGLRYFDMMRQDYQIEPKIE 379
Query: 200 -CNTLMDVYSRFGCIEFARQVFQRM 223
L+DV +R G +E A ++ + M
Sbjct: 380 HYGCLIDVLARAGKLERAVEITKTM 404
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 102/222 (45%), Gaps = 34/222 (15%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
S + + T ++D K MD AT +F+ + + + +++ + + + + ++
Sbjct: 39 SQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQ 98
Query: 153 MQISGVE-PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
+ E PD T + CA++ + +G +H ++ K + +V N L+D+Y +F
Sbjct: 99 LLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFD 158
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFA--------------------------VNGFVG 245
+ A +VF M++R ++SWNS++ G+A ++G+ G
Sbjct: 159 DLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTG 218
Query: 246 -----EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
EA+++F MQ + DE+S L +C+ G +E G
Sbjct: 219 IGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELG 260
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 162/281 (57%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V W + IS + ++G + + F RM+ P+ IT T+LS CA
Sbjct: 192 SIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIK 251
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+N++VSTA+L+MY K G +D +VFD M D W+A++ G+ +
Sbjct: 252 KLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSN 311
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EALE F M+ + ++P+ +T++SVL+ CA + ++ G + YV + NV V + L+
Sbjct: 312 EALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALL 371
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+YS+ G I ARQ+F ++ +R V+WNS+I+G A+NGF +A+ +N M++ K + +
Sbjct: 372 GMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNI 431
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G +TAC+HAG +E GL++F M+ + +SP IEH CI
Sbjct: 432 TFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACI 472
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 35/189 (18%)
Query: 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186
C F TA + + EAL F M + V TI + CA++ + +G +H
Sbjct: 65 CSFITA----YSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHS 120
Query: 187 YVPKQDFKDNVRVCNTLMD-------------------------------VYSRFGCIEF 215
V + F +V N L++ YSR G +
Sbjct: 121 LVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLA 180
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
AR++F +M R++VSWN++I +A NG + F MQ + + +E++ L+ C+
Sbjct: 181 ARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAK 240
Query: 276 AGLIEDGLQ 284
G +E GL+
Sbjct: 241 LGDLEMGLR 249
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 139/211 (65%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V V AL+DMY K G + A VF M + W ++++G ++ F+E+L FR MQ
Sbjct: 239 DVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQ 298
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
GV+PD +T+++VLN CAN+ L +G W+H Y+ + + + + N L+D+Y++ G I+
Sbjct: 299 RLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSID 358
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A VFQ M+++ + S+ ++IVG A++G G+AL+ F+ M K + DEV+F G LTACS
Sbjct: 359 QACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACS 418
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H GL+E+G +YF+ M IY + PQ+EH+GC+
Sbjct: 419 HVGLVEEGRKYFEDMSTIYNLRPQLEHYGCM 449
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 21/196 (10%)
Query: 77 NPSHITFVTLLSGCADF----------------PSNNVMVSTALLDMYAKFGRMD--LAT 118
NP ++F++ L C P + +ST L + A+ +D A
Sbjct: 34 NPHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYAL 93
Query: 119 VVFDVMR--GCDFWTALLNGFVKRDYFE-EALEYFRVMQISGVEPDYLTIISVLNVCANV 175
+ +R + A++ G + E L ++ M G+ PD TI VL CA
Sbjct: 94 SLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAES 153
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
R + G +H K +V V NTLM +Y+ I AR+VF +R LVSW ++I
Sbjct: 154 RAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMI 213
Query: 236 VGFAVNGFVGEALEYF 251
G+ GF E + +
Sbjct: 214 QGYVKMGFAREGVGLY 229
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 132/215 (61%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P+ N++ T L+ Y G++D A V+F+ + D WTA++N V+ FEEAL F
Sbjct: 210 MPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLF 269
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R MQ+ VEPD T++++L CAN+ L G W+H+Y ++ K + + L+D+YS+
Sbjct: 270 RDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKC 329
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G IE + +VF RM R +W +II G A NG G ALE F MQ+ K D V+F G L
Sbjct: 330 GHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVL 389
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+AC H GL+++G + F M+++Y++ P++EH+ C+
Sbjct: 390 SACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCL 424
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 108/199 (54%), Gaps = 8/199 (4%)
Query: 101 STALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
++L++MY GR+D+A VFD M R W ++ +++ + A+ M+ SGV
Sbjct: 87 GSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQMERSGV 146
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
PD +T+++ + C+ R L +G +H Y+ F N+ V N L+D+Y++ C+E A +
Sbjct: 147 TPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV-FGFNLPVANALLDMYTKNDCLEEAVK 205
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
+F++M R ++SW ++ G+ + G + +A FN + + D + +T + AC G
Sbjct: 206 LFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCK----EKDLILWTAMINACVQHGC 261
Query: 279 IEDGLQYFDIMKKIYRVSP 297
E+ L F M ++ RV P
Sbjct: 262 FEEALTLFRDM-QMQRVEP 279
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 19/148 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ I+ + GC EA F M++ P T VTLL+ CA+ +
Sbjct: 247 ILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQY 306
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+ ++ TAL+DMY+K G ++ + VF M+G D WTA++ G A
Sbjct: 307 AEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRA 366
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCAN 174
LE F+ MQ S V+PD +T I VL+ C +
Sbjct: 367 LELFQDMQRSKVKPDGVTFIGVLSACCH 394
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 2/153 (1%)
Query: 126 GCDFW--TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
G W L+ +R F + + ++ G+ D T VL ++ G
Sbjct: 11 GMPLWECNVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRK 70
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
H K F+ + ++LM++Y+ G ++ AR+VF M R LV WN ++ + G
Sbjct: 71 AHAAAIKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGR 130
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
A+ M++ D V+ A+TACS A
Sbjct: 131 YSAAVALSEQMERSGVTPDRVTLVTAVTACSRA 163
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 132/215 (61%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P+ N++ T L+ Y G++D A V+F+ + D WTA++N V+ FEEAL F
Sbjct: 210 MPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLF 269
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R MQ+ VEPD T++++L CAN+ L G W+H+Y ++ K + + L+D+YS+
Sbjct: 270 RDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKC 329
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G IE + +VF RM R +W +II G A NG G ALE F MQ+ K D V+F G L
Sbjct: 330 GHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVL 389
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+AC H GL+++G + F M+++Y++ P++EH+ C+
Sbjct: 390 SACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCL 424
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 109/199 (54%), Gaps = 8/199 (4%)
Query: 101 STALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
++L++MY GR+D+A VFD M R W ++ +++ ++ A+ M+ SGV
Sbjct: 87 GSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQMERSGV 146
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
PD +T+++ + C+ R L +G +H Y+ F N+ V N L+D+Y++ C+E A +
Sbjct: 147 TPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV-FGFNLPVANALLDMYTKNDCLEEAVK 205
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
+F++M R ++SW ++ G+ + G + +A FN + + D + +T + AC G
Sbjct: 206 LFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCK----EKDLILWTAMINACVQHGC 261
Query: 279 IEDGLQYFDIMKKIYRVSP 297
E+ L F M ++ RV P
Sbjct: 262 FEEALTLFRDM-QMQRVEP 279
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 19/148 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ I+ + GC EA F M++ P T VTLL+ CA+ +
Sbjct: 247 ILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQY 306
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+ ++ TAL+DMY+K G ++ + VF M+G D WTA++ G A
Sbjct: 307 AEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRA 366
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCAN 174
LE F+ MQ S V+PD +T I VL+ C +
Sbjct: 367 LELFQDMQRSKVKPDGVTFIGVLSACCH 394
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 2/153 (1%)
Query: 126 GCDFW--TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
G W L+ +R F + + ++ G+ D T VL ++ G
Sbjct: 11 GMPLWECNVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRK 70
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
H K F+ + ++LM++Y+ G ++ AR+VF M R LV WN ++ + G+
Sbjct: 71 AHAAAVKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGW 130
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
A+ M++ D V+ A+TACS A
Sbjct: 131 YSAAVALSEQMERSGVTPDRVTLVTAVTACSRA 163
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 153/281 (54%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------F 93
V W S IS + R G +A F MR G P +T V++L C D F
Sbjct: 193 VSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGF 252
Query: 94 PSNNVM-----VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
N M V +AL+ MY K G + A VFD M D W A++ G+ + +EA
Sbjct: 253 VVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEA 312
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ F M+ SGV PD +T++ VL+ CA++ L G W+ Y ++ ++++ V L+D+
Sbjct: 313 IILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDM 372
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK--GVFKTDEV 264
Y++ G ++ A +VF+ M ++ VSWN++I A +G E+L F M K G + +++
Sbjct: 373 YAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDI 432
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SF G L+AC HAGL+++G Q FD+M + + P+IEHH C+
Sbjct: 433 SFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCM 473
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 128/234 (54%), Gaps = 19/234 (8%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADF--------PSNNVM---------VSTALLDMYAK 110
+ +M+ +G P++ T+ + CA+ + V+ V +L+ MY++
Sbjct: 114 YYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSR 173
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G + A VFD + D W ++++G+ + Y +A+ F M+ +G EPD +T++S+
Sbjct: 174 CGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSI 233
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L C ++ LG+G W+ +V + + N V + L+ +Y + G + AR+VF RM K+ +
Sbjct: 234 LGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDV 293
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
V+WN++I G+A NG EA+ F+ M++ D+++ G L+AC+ G ++ G
Sbjct: 294 VTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFG 347
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%)
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
F +E++ M+ G+ P+ T V CAN+ L G H V K + V ++
Sbjct: 107 FNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHS 166
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+ +YSR G + AR+VF + ++ LVSWNS+I G++ G+ G+A+ F M+ F+ D
Sbjct: 167 LITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPD 226
Query: 263 EVSFTGALTACSHAG 277
E++ L AC G
Sbjct: 227 EMTLVSILGACGDLG 241
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 137/249 (55%), Gaps = 33/249 (13%)
Query: 90 CADFPSNNVMVSTALLDMYAK-------------------------------FGRMDLAT 118
C P +N+ + AL+DMY K G+M A
Sbjct: 146 CKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAG 205
Query: 119 VVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR 176
+FD+M R WTA+++G+ + + +AL FR MQI GVEPD ++IISVL CA +
Sbjct: 206 ALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLG 265
Query: 177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIV 236
L +G W+H Y + +CN LM++YS+ GCI A Q+F +M K ++SW+++I
Sbjct: 266 ALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIG 325
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
G A +G EA+E F M+K + + ++F G L+AC+HAG +GL YFD M K Y +
Sbjct: 326 GLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIE 385
Query: 297 PQIEHHGCI 305
P++EH+GC+
Sbjct: 386 PEVEHYGCL 394
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 14/213 (6%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
S + + T ++D+ K + A+++F ++ + + A++ + A+ +++
Sbjct: 43 SQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILFYKE 102
Query: 153 M-------QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
M + + PD T V+ C+ + +G +H ++ K K N+ + N L+D
Sbjct: 103 MLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALID 162
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ + A +VF M +R +SWNSII G G + +A F+LM ++T VS
Sbjct: 163 MYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMP---YRT-IVS 218
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ 298
+T ++ + G D L F M +I V P
Sbjct: 219 WTAMISGYTRLGSYADALYVFRQM-QIVGVEPD 250
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 152/276 (55%), Gaps = 20/276 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V WT IS + +SG EA F +M G P+ T +LL PS+
Sbjct: 172 VSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAF 231
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
NV V ++LLDMYA++ M A V+F+ + + W AL+ G ++ E
Sbjct: 232 SLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHV 291
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ F M G EP + T SV CA+ +L G W+H +V K + + NTL+D+
Sbjct: 292 MRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDM 351
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G I+ A++VF+R+ K+ +VSWNSII G+A +G EAL+ F M K + +E++F
Sbjct: 352 YAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITF 411
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
LTACSH+GL+++G YF++MKK +++ Q+ HH
Sbjct: 412 LSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHH 446
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 99/189 (52%), Gaps = 2/189 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+++++ +L+MYAK G ++ A +FD M D WT L++G+ + EAL F M
Sbjct: 138 DDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKM 197
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
G +P+ T+ S+L + G +H + K + NV V ++L+D+Y+R+ +
Sbjct: 198 LHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHM 257
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A+ +F + + +VSWN++I G A G + F M + F+ +++ TAC
Sbjct: 258 REAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTAC 317
Query: 274 SHAGLIEDG 282
+ +G +E G
Sbjct: 318 ASSGSLEQG 326
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 20/210 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN-------- 97
V W + I+ H R G F +M G P+H T+ ++ + CA S
Sbjct: 273 VSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAH 332
Query: 98 ---------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ L+DMYAK G + A VF + D W ++++G+ + EA
Sbjct: 333 VIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEA 392
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F M + V+P+ +T +SVL C++ L G + + K + V T++D+
Sbjct: 393 LQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDL 452
Query: 207 YSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
R G + A + + M K T W +++
Sbjct: 453 LGRAGRLNEANKFIEEMPIKPTAAVWGALL 482
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 64/115 (55%)
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
+EP+ +LN C +R L G +H ++ F+D++ + N ++++Y++ G +E A+
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+F +M + +VSW +I G++ +G EAL F M F+ +E + + L A
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA 215
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 160/282 (56%), Gaps = 22/282 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V W + IS + +SG + EA F MR P+ T +++LS CA S+
Sbjct: 226 VSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRS 285
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N+ + L+DMY K G ++ A+ +F+ ++ + W ++ G+ ++E
Sbjct: 286 WIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKE 345
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVCNTL 203
AL FR M S ++P+ +T +S+L CAN+ L +G W+H YV K + K+ V + +L
Sbjct: 346 ALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSL 405
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G + A+++F M+ ++L +WN++I GFA++G AL F+ M F D+
Sbjct: 406 IDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDD 465
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++F G LTAC HAGL+ G +YF M + Y+VSP++ H+GC+
Sbjct: 466 ITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCM 507
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 123/270 (45%), Gaps = 52/270 (19%)
Query: 65 ALEF-TRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTALLD 106
ALE+ M GT P+ TF ++ C +N V T+L++
Sbjct: 112 ALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLIN 171
Query: 107 MYAKFGRMDLATVVFD---------------------------------VMRGCDFWTAL 133
MYA+ G + A +VFD +R W A+
Sbjct: 172 MYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAM 231
Query: 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV-RTLGIGLWMHRYVPKQD 192
++G+ + EEA+ +F M+ + V P+ T++SVL+ CA +L +G W+ ++ +
Sbjct: 232 ISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRG 291
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
N+R+ N L+D+Y + G +E A +F+++ + +VSWN +I G+ EAL F
Sbjct: 292 LGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFR 351
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M + ++V+F L AC++ G ++ G
Sbjct: 352 RMMQSNIDPNDVTFLSILPACANLGALDLG 381
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 23/227 (10%)
Query: 75 GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTA 132
G + +H L+ CA P G + A +F +R + W
Sbjct: 55 GLHNTHFALSKLIEFCAVSP----------------HGDLSYALSLFKTIRNPNHVIWNH 98
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
++ G + ALEY+ M SG EP+ T S+ C +R G +H +V K
Sbjct: 99 MIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLG 158
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
+ N V +L+++Y++ G + AR VF + R VS+ ++I G+A GF+ EA E F+
Sbjct: 159 LEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFD 218
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299
+ D VS+ ++ + +G +E+ + +F+ M++ +V+P +
Sbjct: 219 ----EIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRA-KVTPNV 260
>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Brachypodium distachyon]
Length = 527
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 130/215 (60%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
PS N++ T L+ YA G++D A V+F D WTA++N V+ FEEAL F
Sbjct: 207 MPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMINACVQHGCFEEALSLF 266
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R MQ+ VEPD TI+++L CAN+ L G W+H++ + K + + L+D+Y++
Sbjct: 267 REMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQFAVDRKMKVDAVLGTALIDMYAKC 326
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G ++ + +VF++M R +W SII G A NG G ALE F M++ K D ++F G L
Sbjct: 327 GHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELFEDMERSKVKPDSITFIGVL 386
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+AC H GL+++G + F MK +YR+ P+IEH+ C+
Sbjct: 387 SACCHGGLVDEGRKQFHAMKDVYRIPPRIEHYSCL 421
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 110/204 (53%), Gaps = 10/204 (4%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+ +++L+DMY GR D+A +FD M R W ++ +V+ + A+ M+
Sbjct: 80 DAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIALAEEME 139
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
SG+ PD +T+++ + VC+ L +G +H Y+ F ++ V N L+D+Y + GC+E
Sbjct: 140 RSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGV-FGFSLPVANALLDMYMKNGCLE 198
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA-LEYFNLMQKGVFKTDEVSFTGALTAC 273
A ++F++M R ++SW ++ G+A G + +A + ++ +K D + +T + AC
Sbjct: 199 EAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEK-----DLIMWTAMINAC 253
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSP 297
G E+ L F M ++ RV P
Sbjct: 254 VQHGCFEEALSLFREM-QMQRVEP 276
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 19/148 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ I+ + GC EA F M++ P T VTLL+ CA+ +
Sbjct: 244 IMWTAMINACVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQF 303
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+ ++ TAL+DMYAK G + + VF+ M+G D WT+++ G A
Sbjct: 304 AVDRKMKVDAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRA 363
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCAN 174
LE F M+ S V+PD +T I VL+ C +
Sbjct: 364 LELFEDMERSKVKPDSITFIGVLSACCH 391
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 3/173 (1%)
Query: 124 MRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
+R C+ L+ +R F + + ++ G+ D T VL ++ G
Sbjct: 11 LRDCNL---LIRTLARRGSFARVMAVYYDLRGRGLVADSFTYPFVLRAIGVLKLSVEGRK 67
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
H K F + ++LMD+Y+ G + AR++F M R LV WN +I + G
Sbjct: 68 AHAAAMKTGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRCGR 127
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
A+ M++ D+V+ ++T CS AG + G + M ++ S
Sbjct: 128 YTAAIALAEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGVFGFS 180
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 108/312 (34%), Positives = 154/312 (49%), Gaps = 54/312 (17%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V W + IS H RSG + F M + +T+V++LS C
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186
Query: 93 ------FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM---------------------- 124
P V AL+DMYA+ G MD A V+F+ M
Sbjct: 187 VLESGVLPDQR--VENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVD 244
Query: 125 RGCDF-----------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173
R D WTA+++G+V+ F +ALE FR MQI V D T++SV+ CA
Sbjct: 245 RARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACA 304
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
+ L G W Y+ + K +V V N L+D+YS+ G IE A VF+ MH R +W +
Sbjct: 305 QLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTA 364
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
II+G AVNG EA++ F M + + DEV+F G LTAC+HAGL++ G ++F M + Y
Sbjct: 365 IILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAY 424
Query: 294 RVSPQIEHHGCI 305
+SP + H+GC+
Sbjct: 425 NISPTVVHYGCL 436
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 23/225 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
T+ WT+ I + + G +A F M++ T V++++ CA +
Sbjct: 258 TIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARI 317
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
+V V AL+DMY+K G ++ A VF M D WTA++ G EE
Sbjct: 318 YMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEE 377
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLM 204
A++ F M + PD +T + VL C + + G + + V L+
Sbjct: 378 AIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLI 437
Query: 205 DVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAV--NGFVGE 246
DV R G ++ A +M K W +++ V N +GE
Sbjct: 438 DVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGE 482
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 145/247 (58%), Gaps = 17/247 (6%)
Query: 76 TNPSHIT-FVTLLSGCADFPS----------NNVMVSTALLDMYAKFGRMDLATVVFDVM 124
++PS +T V + S CA S + + A+L YAK G M A +F+ M
Sbjct: 160 SHPSVVTSLVQMYSSCAHLSSARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECM 219
Query: 125 ----RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI 180
R WT L++G+ + EA+ FR+M + V+PD + I++VL+ CA++ L +
Sbjct: 220 PEKDRDVVSWTTLISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQL 279
Query: 181 GLWMHRYVPKQD--FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF 238
G W+H Y+ K + + V +CN+L+D+Y++ G I ARQ+FQ M +T+++W ++I G
Sbjct: 280 GEWIHNYIEKHNNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGL 339
Query: 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ 298
A++GF EAL+ F+ M+K K +EV+ L+ACSH GL+E G F M+ Y + P+
Sbjct: 340 ALHGFGKEALDVFSCMEKARVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIEPK 399
Query: 299 IEHHGCI 305
IEH+GC+
Sbjct: 400 IEHYGCM 406
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F +++ G+ PD + VL + + +G +H + V +L+
Sbjct: 111 AISLFNAIRLLGMPPDSYSFPFVLKAVVCLSAVHVGKQIHCQAIVSGLDSHPSVVTSLVQ 170
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS + AR++F + WN+++ G+A G + A F M + D VS
Sbjct: 171 MYSSCAHLSSARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECMPEK--DRDVVS 228
Query: 266 FTGALTACSHAGLIEDGLQYFDIM 289
+T ++ + + + F IM
Sbjct: 229 WTTLISGYTQTHSPNEAITLFRIM 252
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 159/288 (55%), Gaps = 22/288 (7%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEF--TRMRLYGTNPSHITFVTLLSGCADFPS- 95
+ST+ V W I+ H G + E A + +L P +T V+L+ CA +
Sbjct: 171 ESTVRDVVTWNIMINAHLNKG-LSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNL 229
Query: 96 ----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGF 137
N+ V+ A+LDMY K ++ A VF+ +R D WT++L+G
Sbjct: 230 ERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGL 289
Query: 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197
K YF+EAL F+ MQ++ +E D +T++ VL+ CA L G ++H + K + ++
Sbjct: 290 AKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDL 349
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
+ L+D+Y++ G I+ A QVF+RM R + +WN++I G A++G +A+ F+ M+
Sbjct: 350 VLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHD 409
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+V+F L ACSHAGL+++GL F MK +++ P++EH+GC+
Sbjct: 410 KLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCV 457
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 153/310 (49%), Gaps = 50/310 (16%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTN-PSHITFVTLLSGCA------------ 91
V W IS + R EA + RM P+ T V+ LS CA
Sbjct: 174 AVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIH 233
Query: 92 DFPSNNVMVST----ALLDMYAKFGRMDLATVVFDVM----------------------- 124
D+ ++ + ++T ALLDMY K G + +A +FD M
Sbjct: 234 DYIASELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQ 293
Query: 125 ----------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
R WTA++NG+V+ + FEE + F MQI GV+PD ++++L CA
Sbjct: 294 ARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQ 353
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
L G W+H Y+ + K + V L+++Y++ GCIE + ++F + ++ SW SI
Sbjct: 354 SGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSI 413
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I G A+NG EALE F MQ K D+++F L+ACSHAGL+E+G + F M +Y
Sbjct: 414 ICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYH 473
Query: 295 VSPQIEHHGC 304
+ P +EH+GC
Sbjct: 474 IEPNLEHYGC 483
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 123/282 (43%), Gaps = 52/282 (18%)
Query: 52 ISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------NNVMVSTAL 104
I +SG A F ++R +G P + T+ +L G + +V T L
Sbjct: 80 IKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGL 139
Query: 105 ----------LDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
+DMYA+ G ++ T VF+ M R W +++G+V+ FEEA++ +R
Sbjct: 140 EFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRR 199
Query: 153 MQI-SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M S +P+ T++S L+ CA +R L +G +H Y+ + + N L+D+Y + G
Sbjct: 200 MWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASE-LDLTTIMGNALLDMYCKCG 258
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFA--------------------------VNGFV- 244
+ AR++F M + + W S++ G+ +NG+V
Sbjct: 259 HVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQ 318
Query: 245 ----GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
E + F MQ K D+ LT C+ +G +E G
Sbjct: 319 FNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQG 360
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 24/211 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------DF 93
V WT+ I+ + + E F M++ G P VTLL+GCA ++
Sbjct: 307 VLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNY 366
Query: 94 PSNN-----VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
N +V TAL++MYAK G ++ + +F+ ++ D WT+++ G EA
Sbjct: 367 IDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEA 426
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-HRYVPKQDFKDNVRVCNTLMD 205
LE F+ MQ G++PD +T ++VL+ C++ + G + H + N+ +D
Sbjct: 427 LELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFID 486
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIV 236
+ R G ++ A ++ +++ + N IIV
Sbjct: 487 LLGRAGLLQEAEELVKKLPAQN----NEIIV 513
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 3/184 (1%)
Query: 107 MYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
M + G + A +F+ + + ++ FVK F A+ F+ ++ GV PD T
Sbjct: 51 MDSSLGDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYT 110
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
VL + + G +H +V K + + VCN+ MD+Y+ G +E QVF+ M
Sbjct: 111 YPYVLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMP 170
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALTACSHAGLIEDGL 283
R VSWN +I G+ EA++ + M + K +E + L+AC+ +E G
Sbjct: 171 DRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGK 230
Query: 284 QYFD 287
+ D
Sbjct: 231 EIHD 234
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 105/312 (33%), Positives = 158/312 (50%), Gaps = 50/312 (16%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV----- 98
T V W S I+ + + G EA L F M G T V+LLS + + ++
Sbjct: 202 TIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVH 261
Query: 99 ------------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGF------- 137
+V+ AL+DMYAK G + A VFD M D WT+++N +
Sbjct: 262 LYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVE 321
Query: 138 ------------------------VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173
V+ + EA+E F M ISGV PD T++S+L+ C+
Sbjct: 322 NAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCS 381
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
N L +G H Y+ +V +CN+L+D+Y++ G ++ A +F M ++ +VSWN
Sbjct: 382 NTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNV 441
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
II A++GF EA+E F MQ DE++FTG L+ACSH+GL++ G YFDIM +
Sbjct: 442 IIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTF 501
Query: 294 RVSPQIEHHGCI 305
R+SP +EH+ C+
Sbjct: 502 RISPGVEHYACM 513
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 19/212 (8%)
Query: 62 LEAALEFTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTAL 104
+++ L F +M G P+ TF +L CA P + V A+
Sbjct: 119 MKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAI 178
Query: 105 LDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
L Y + A VFD + R W +++ G+ K + +EA+ F+ M GVE D
Sbjct: 179 LTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADV 238
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T++S+L+ + L +G ++H Y+ + + V N L+D+Y++ G ++FA+ VF +
Sbjct: 239 FTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQ 298
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
M + +VSW S++ +A G V A++ FN M
Sbjct: 299 MLDKDVVSWTSMVNAYANQGLVENAVQIFNHM 330
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 119/276 (43%), Gaps = 31/276 (11%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD--------- 92
+ V W S I + G EA F RM + G P T V++LS C++
Sbjct: 332 VKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQ 391
Query: 93 ---FPSNNVM-----VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
+ +N++ + +L+DMYAK G + A +F M + W ++ +
Sbjct: 392 AHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGF 451
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-LWMHRYVPKQDFKDNVRVCN 201
EEA+E F+ MQ SG+ PD +T +L+ C++ + +G + + V
Sbjct: 452 GEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYA 511
Query: 202 TLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVF 259
++D+ R G + A + Q+M K +V W +++ + G + A + L++ G F
Sbjct: 512 CMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRF 571
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV 295
+ + + S Q +D MKKI ++
Sbjct: 572 NSGLYVLLSNMYSES---------QRWDDMKKIRKI 598
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 16/214 (7%)
Query: 77 NPSHITFVTLLSGCADFP--------------SNNVMVSTALLDMYAKFGRMDLATVVFD 122
+P+H T LL C+ + V+ LL + + G + A ++FD
Sbjct: 36 SPTHQTLHHLLDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFD 95
Query: 123 VMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI 180
+ + + L+ G+ + ++L FR M +G P+ T VL CA
Sbjct: 96 QIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWE 155
Query: 181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAV 240
+ +H K + V N ++ Y I ARQVF + RT+VSWNS+I G++
Sbjct: 156 AVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSK 215
Query: 241 NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
GF EA+ F M + + D + L+A S
Sbjct: 216 MGFCDEAILLFQEMLQLGVEADVFTLVSLLSASS 249
>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Cucumis sativus]
Length = 677
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 153/276 (55%), Gaps = 21/276 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V WT IS + +SG EA F +M G P+ T +LL PS+
Sbjct: 172 VSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAF 231
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
NV V ++LLDMYA++ M A V+F+ + + W AL+ G ++ E
Sbjct: 232 SLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHV 291
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ F M G EP + T SVL CA+ +L G W+H +V K + + NTL+D+
Sbjct: 292 MRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDM 350
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G I+ A++VF+R+ K+ +VSWNSII G+A +G EAL+ F M K + +E++F
Sbjct: 351 YAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITF 410
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
LTACSH+GL+++G YF++MKK +++ Q+ HH
Sbjct: 411 LSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHH 445
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+++++ +L+MYAK G ++ A +FD M D WT L++G+ + EAL F M
Sbjct: 138 DDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKM 197
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
G +P+ T+ S+L + G +H + K + NV V ++L+D+Y+R+ +
Sbjct: 198 LHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHM 257
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A+ +F + + +VSWN++I G A G + F M + F+ +++ L AC
Sbjct: 258 REAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-AC 316
Query: 274 SHAGLIEDG 282
+ +G +E G
Sbjct: 317 ASSGSLEQG 325
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 21/210 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN-------- 97
V W + I+ H R G F +M G P+H T+ ++L+ CA S
Sbjct: 273 VSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLA-CASSGSLEQGKWVHAH 331
Query: 98 ---------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ L+DMYAK G + A VF + D W ++++G+ + EA
Sbjct: 332 VIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEA 391
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F M + V+P+ +T +SVL C++ L G + + K + V T++D+
Sbjct: 392 LQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDL 451
Query: 207 YSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
R G + A + + M K T W +++
Sbjct: 452 LGRAGRLNEANKFIEEMPIKPTAAVWGALL 481
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 64/115 (55%)
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
+EP+ +LN C +R L G +H ++ F+D++ + N ++++Y++ G +E A+
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+F +M + +VSW +I G++ +G EAL F M F+ +E + + L A
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA 215
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 130/215 (60%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P N++ T L+ YA G++D A ++F D WTA++N V+ FEEAL F
Sbjct: 207 MPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKDLILWTAMINACVQHGSFEEALTLF 266
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R MQ+ VEPD T++++L CAN+ L G W+H+Y ++ K + + L+++YS+
Sbjct: 267 RDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAEGRNMKIDAVLGTALIEMYSKC 326
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G ++ + Q+F RM R +W +II G A NG +ALE F MQ+ K D ++F G L
Sbjct: 327 GHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDGITFIGVL 386
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
AC H GL+++G ++F MK+IY++ P+IEH+ C+
Sbjct: 387 NACCHGGLVDEGRRHFQAMKEIYQIEPRIEHYSCL 421
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 109/204 (53%), Gaps = 10/204 (4%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+ +++LL+MY GR+D A VFD M R W ++ +++ F A+ M+
Sbjct: 80 DAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAEEME 139
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
SG PD +T+++ + C+ L +G + Y+ F ++ V N L+D+Y++ G +E
Sbjct: 140 RSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGV-FGFSLPVANALLDMYTKNGYLE 198
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA-LEYFNLMQKGVFKTDEVSFTGALTAC 273
A ++FQ+M +R ++SW ++ G+AV G + +A + ++ QK D + +T + AC
Sbjct: 199 EAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQCTQK-----DLILWTAMINAC 253
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSP 297
G E+ L F M ++ RV P
Sbjct: 254 VQHGSFEEALTLFRDM-QLQRVEP 276
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 19/148 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ I+ + G EA F M+L P T VTLL+ CA+ +
Sbjct: 244 ILWTAMINACVQHGSFEEALTLFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQY 303
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+ ++ TAL++MY+K G +D + +F M+G D WTA++ G +A
Sbjct: 304 AEGRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKA 363
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCAN 174
LE F MQ S +PD +T I VLN C +
Sbjct: 364 LELFEEMQRSKTKPDGITFIGVLNACCH 391
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 5/183 (2%)
Query: 116 LATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173
+AT + M R C+ L+ +R F + + ++ G+ D T VL
Sbjct: 1 MATACYHAMPLRDCNV---LIRTLARRGSFARVMAVYYDLRARGLVADSYTYPFVLRAIG 57
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
++ G +H K F+ + ++L+++Y+ G ++FAR+VF M +R LV WN
Sbjct: 58 VMKLSVEGRKVHAAAVKTGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNM 117
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
++ + G A+ M++ D V+ A+TACS AG + G + M ++
Sbjct: 118 MMRCYIRCGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGVF 177
Query: 294 RVS 296
S
Sbjct: 178 GFS 180
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 156/302 (51%), Gaps = 35/302 (11%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN- 97
KS + V W S I+ + R G EA + M++ G P +T + ++S CA +
Sbjct: 139 KSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDL 198
Query: 98 ----------------VMVSTALLDMYAKFGRMDLA----------------TVVFDVMR 125
V ++ AL+DMY K G ++ A T++FD M
Sbjct: 199 GRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMP 258
Query: 126 GCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
D W A++ G+V + +EAL F MQ + PD +T++S L+ C+ + L +G+W
Sbjct: 259 DKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIW 318
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H Y+ K + NV + L+D+Y++ G I A QVFQ + R ++W +II G A++G
Sbjct: 319 IHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGN 378
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303
A+ YF+ M DEV+F G L+AC H GL+E+G +YF M + +SP+++H+
Sbjct: 379 AHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYS 438
Query: 304 CI 305
C+
Sbjct: 439 CM 440
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 136/283 (48%), Gaps = 36/283 (12%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTR-MRLYGTNPSHITFVTLLSGCADFP--------- 94
T W +I S EA + + R ++ GT P + T+ L CA
Sbjct: 43 TFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEIL 102
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFE 144
+++ VS A++ + G +D A +FD +R W +++NG+V+R +
Sbjct: 103 GHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAY 162
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL ++R M++ G++PD +T+I V++ CA + L +G H Y+ + K V + N LM
Sbjct: 163 EALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALM 222
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVS----------------WNSIIVGFAVNGFVGEAL 248
D+Y + G +E AR++F M +T+VS WN++I G+ EAL
Sbjct: 223 DMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEAL 282
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
FN MQ DEV+ L+ACS G ++ G+ ++K
Sbjct: 283 ALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEK 325
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 155/311 (49%), Gaps = 50/311 (16%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
V W +S + R ++ + F M G +P+ +T V +LS C+
Sbjct: 173 VVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYK 232
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF------------------ 129
N+++ L+DM+A G MD A VFD M+ D
Sbjct: 233 YINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDL 292
Query: 130 ---------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
WTA+++G+++ + F EAL FR MQ+S V+PD T++S+L CA+
Sbjct: 293 ARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAH 352
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ L +G W+ Y+ K K++ V N L+D+Y + G + A++VF+ MH + +W ++
Sbjct: 353 LGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAM 412
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
IVG A+NG EAL F+ M + DE+++ G L AC+HAG++E G +F M +
Sbjct: 413 IVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHG 472
Query: 295 VSPQIEHHGCI 305
+ P + H+GC+
Sbjct: 473 IKPNVTHYGCM 483
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 33/220 (15%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+N+ V A + M++ +DLA VFD+ + W +L+G+ + F+++ F M
Sbjct: 140 SNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEM 199
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ GV P+ +T++ +L+ C+ ++ L G +++Y+ + N+ + N L+D+++ G +
Sbjct: 200 EKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEM 259
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFA--------------------------VNGFVG-- 245
+ A+ VF M R ++SW SI+ GFA ++G++
Sbjct: 260 DEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMN 319
Query: 246 ---EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
EAL F MQ K DE + LTAC+H G +E G
Sbjct: 320 RFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELG 359
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 21/211 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WT+ I + R +EA F M++ P T V++L+ CA +
Sbjct: 306 VSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTY 365
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
N+ V AL+DMY K G + A VF M D WTA++ G + EEA
Sbjct: 366 IDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEA 425
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMD 205
L F M + + PD +T I VL C + + G + + K NV ++D
Sbjct: 426 LAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVD 485
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
+ R G +E A +V M K + W S++
Sbjct: 486 LLGRAGRLEEAHEVIVNMPVKPNSIVWGSLL 516
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 4/174 (2%)
Query: 112 GRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
G+M A VFD + W ++ G+ + ++ + + + +M S ++PD T +L
Sbjct: 55 GKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLL 114
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
L G + + K F N+ V + ++S ++ AR+VF +V
Sbjct: 115 KGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVV 174
Query: 230 SWNSIIVGF-AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+WN ++ G+ V F + + + ++GV + V+ L+ACS +E G
Sbjct: 175 TWNIMLSGYNRVKQFKKSKMLFIEMEKRGV-SPNSVTLVLMLSACSKLKDLEGG 227
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 159/285 (55%), Gaps = 21/285 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + IS + +G EA F +M P T VT+LS CA S
Sbjct: 197 VKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQ 256
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
N+ + AL+D+Y+K G ++ A +F + D W L+ G+ +
Sbjct: 257 VHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNL 316
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVC 200
++EAL F+ M SG +P+ +T++S+L+ CA++ + IG W+H Y+ K + + +
Sbjct: 317 YKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 376
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+L+D+Y++ G IE A+QVF M R+L SWN++I GFA++G A + F+ M+K +
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIE 436
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSH+G+++ G F M + Y++ P++EH+GC+
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCM 481
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 108/188 (57%), Gaps = 2/188 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+V+ TAL+ YA G ++ A +FD + D W A ++G+ + ++EALE F+ M
Sbjct: 168 DVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMM 227
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ V PD T+++VL+ CA ++ +G +H ++ F N+++ N L+D+YS+ G +E
Sbjct: 228 KTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELE 287
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +FQ + + ++SWN++I G+ EAL F M + K ++V+ L+AC+
Sbjct: 288 TACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACA 347
Query: 275 HAGLIEDG 282
H G I+ G
Sbjct: 348 HLGAIDIG 355
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 33/207 (15%)
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + A VFD ++ W + G AL+ + M G+ P+ T +
Sbjct: 50 FDGLPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFL 109
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY--------------------- 207
L CA G +H V K F ++ + +L+ +Y
Sbjct: 110 LKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDV 169
Query: 208 ----------SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
+ G IE A ++F + + +VSWN+ I G+A G EALE F M K
Sbjct: 170 VSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKT 229
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ DE + L+AC+ +G IE G Q
Sbjct: 230 NVRPDESTMVTVLSACAQSGSIELGRQ 256
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 27/287 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
V WTS I+ + C EA + M L+ P+ IT V +L CA
Sbjct: 172 VAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDR 231
Query: 92 -------DFPSN---NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK 139
F SN NV+++TA++DMYAK G + A +F+ M R W +++ + +
Sbjct: 232 TGQMGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQ 291
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
EAL+ F M+I+G +PD T + V+ CA++ L G +H YV K + D+ +
Sbjct: 292 YGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAI 351
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG-V 258
L+D+Y++ G E A+QVF + K+ + +W S+I+G A++G EAL +F MQ+
Sbjct: 352 GTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTA 411
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
DE+++ G L+ACSH G +EDG +F MK ++ + P +H+GC+
Sbjct: 412 LIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCM 458
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 124/261 (47%), Gaps = 26/261 (9%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN---------- 97
W S I + S EA + MR G P H TF +L C+ N
Sbjct: 73 WNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIV 132
Query: 98 -------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
V +TALL MYA G M+ A VFD + + WT+L+ G + D EA+
Sbjct: 133 KTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVR 192
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD-------NVRVCN 201
++ M++ V P+ +T+++VL CA R L G W+H + NV +
Sbjct: 193 VYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILAT 252
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
++D+Y++ G ++ AR +F +M R LV+WNS+I + G EAL+ F+ M+ F
Sbjct: 253 AIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDP 312
Query: 262 DEVSFTGALTACSHAGLIEDG 282
D+ +F + AC+H G + G
Sbjct: 313 DKATFLCVIGACAHLGALVSG 333
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 2/171 (1%)
Query: 108 YAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
Y+ G ++ A VF+ + W +++ G+ + +EAL +R M+ G PD+ T
Sbjct: 49 YSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTF 108
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
VL C+ V +G +H + K F+ +V L+ +Y+ G +E A +VF + K
Sbjct: 109 PFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPK 168
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
+V+W S+I G N EA+ + M+ +E++ L AC+ +
Sbjct: 169 WNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARS 219
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 148/252 (58%), Gaps = 6/252 (2%)
Query: 57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDL 116
RSGC A ++ + + +Y + + G +V+ ++ +A+ G+M
Sbjct: 146 RSGCESNAIVQNSLIEMYTRAGDLVLARKVFDG---MQERDVVSWNTVISAHARLGQMRK 202
Query: 117 ATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A VF+ M + WTAL++G+ F A+E FR+MQ+ G EPD ++I++VL CA
Sbjct: 203 ARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQ 262
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ L +G W++ Y + VCN L+++Y++ GCI+ A Q+F M ++ ++SW+++
Sbjct: 263 LGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTM 322
Query: 235 IVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
+ G A +G EA++ F M++ G K + ++F G L+ACSHAGL+++GL YFD M +Y
Sbjct: 323 VGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDVY 382
Query: 294 RVSPQIEHHGCI 305
+ P +EH+GCI
Sbjct: 383 GIEPGVEHYGCI 394
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 113/260 (43%), Gaps = 49/260 (18%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMR--GCDFWTALLNGFVKRDYFEEALE-YFR 151
S + ++T ++ + GR+ AT VF +R A++ + + +A+ Y R
Sbjct: 42 SQSSYLATQIVHLCNAHGRVAHATRVFSQVREPNLHLHNAMIKAYAQNHRHLDAITVYIR 101
Query: 152 VMQ------ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+++ IS D T +L C + L +G +H +V + + N V N+L++
Sbjct: 102 MLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIE 161
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSII------------------------------ 235
+Y+R G + AR+VF M +R +VSWN++I
Sbjct: 162 MYTRAGDLVLARKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTAL 221
Query: 236 -VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF------DI 288
G+ G A+E F LMQ F+ D+VS L AC+ G +E G + +
Sbjct: 222 VSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQM 281
Query: 289 MKKIYRVSPQIEHH---GCI 305
+++ Y + +E + GCI
Sbjct: 282 LRETYVCNALVEMYAKCGCI 301
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 138/216 (63%), Gaps = 2/216 (0%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEY 149
+ P NV+ T+++ Y +G +D A +F+ ++ WTA++NG+V+ ++F+EA+
Sbjct: 17 EMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVAL 76
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F+ MQI V+PD ++++L CA + L G W+H Y+ ++ + V +L+++YS+
Sbjct: 77 FQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSK 136
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
GCIE A ++F + ++ +W SII G A+NG +ALE F+ M++ DEV+F G
Sbjct: 137 CGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQVEAIPDEVTFIGV 196
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH GL+E+G ++F+ M IY + P++EH+GC+
Sbjct: 197 LSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCL 232
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 20/206 (9%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-- 95
+S + V WT+ I+ + + EA F M++ P V LL+GCA +
Sbjct: 47 ERSPVKDVVLWTAMINGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALE 106
Query: 96 ---------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFV 138
+ +V T+L++MY+K G ++ A +F +R D WT+++ G
Sbjct: 107 QGTWIHGYIDEKGIPVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLA 166
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNV 197
+ALE F M+ PD +T I VL+ C++ + G + + + + +
Sbjct: 167 MNGKTSKALELFSKMKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKL 226
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRM 223
L+D+ R G ++ A ++ +++
Sbjct: 227 EHYGCLIDLLGRAGQLDEAEELIKKI 252
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 31/108 (28%)
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA-------------------------- 239
+Y + GC+ AR++F M + ++ W S++ G+
Sbjct: 1 MYCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAM 60
Query: 240 VNGFV-----GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+NG+V EA+ F MQ K D+ LT C+ G +E G
Sbjct: 61 INGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQG 108
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 156/279 (55%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC------------ADF 93
V W + I+ + ++G +E F M G IT V++++ C A++
Sbjct: 186 VMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEY 245
Query: 94 PSNNVMVS-----TALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+V TAL+DMYAK G + A +FD M+ D W+A+++G+ + D EA
Sbjct: 246 VDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREA 305
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F MQ++ VEP+ +T++SVL+ CA + L G W+H Y+ ++ + + L+D
Sbjct: 306 LALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDF 365
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ GCI+ A + F+ M + +W ++I G A NG EALE F+ M+K + +V+F
Sbjct: 366 YAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTF 425
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSH+ L+E+G ++FD M + Y + P+ EH+GC+
Sbjct: 426 IGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCV 464
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 99/185 (53%), Gaps = 2/185 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMR--GCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
V ++L+ MYA + A ++FD + G W A++ ++K + E +E F+ M G
Sbjct: 156 VLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVG 215
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
V D +T++SV+ C + +G W+ YV ++ N + L+D+Y++ G + AR
Sbjct: 216 VAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKAR 275
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
++F M R +V+W+++I G+ EAL F+ MQ + ++V+ L+AC+ G
Sbjct: 276 RLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLG 335
Query: 278 LIEDG 282
+E G
Sbjct: 336 ALETG 340
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Query: 130 WTALLNGFVKRDYFEEALEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
+ L+ + + E+AL F ++ ++ V PD T+ L C+ + TL +G + Y
Sbjct: 86 YNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYA 145
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K+ + V ++L+ +Y+ + A+ +F + + +V WN+II + NG E +
Sbjct: 146 VKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVV 205
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAG 277
E F M + DE++ +TAC G
Sbjct: 206 EMFKGMLEVGVAFDEITLVSVVTACGRIG 234
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 126/210 (60%), Gaps = 2/210 (0%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQI 155
V V L+ MYA G + A +F++M R W +++NG+ EAL FR M +
Sbjct: 30 VFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGL 89
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
GVEPD T++S+L+ CA + L +G H Y+ K N+ N L+D+Y++ G I
Sbjct: 90 RGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQ 149
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
A +VF M ++++VSW S+IVG AVNGF EALE F +++ E++F G L ACSH
Sbjct: 150 AHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 209
Query: 276 AGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G++++G YF MK+ Y + P+IEH+GC+
Sbjct: 210 CGMVDEGFDYFKRMKEEYGIVPKIEHYGCM 239
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I+ + +G EA F M L G P T V+LLS CA+ +
Sbjct: 62 VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 121
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N+ ALLD+YAK G + A VFD M + WT+L+ G + +EA
Sbjct: 122 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEA 181
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMD 205
LE F+ ++ G+ P +T + VL C++ + G + R + + ++D
Sbjct: 182 LELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVD 241
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVG 245
+ R G ++ A + Q M + V W +++ ++G +
Sbjct: 242 LLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLA 282
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%)
Query: 181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAV 240
G +H + F+ V V NTL+ +Y+ G E A ++F+ M +R LV+WNS+I G+A+
Sbjct: 14 GEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYAL 73
Query: 241 NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
NG EAL F M + D + L+AC+ G + G + M K+
Sbjct: 74 NGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKV 125
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 159/285 (55%), Gaps = 21/285 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + IS + +G EA F M P T VT+LS CA S
Sbjct: 197 VKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQ 256
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ + AL+D+Y K G ++ A+ +F+ + D W L+ G+ +
Sbjct: 257 VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNL 316
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVC 200
++EAL F+ M SG P+ +T++S+L CA++ + IG W+H Y+ K + + +
Sbjct: 317 YKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLR 376
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+L+D+Y++ G IE A+QVF M R+L SWN++I GFA++G A + F+ M+K +
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIE 436
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSH+G+++ G F M + Y+++P++EH+GC+
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCM 481
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 106/188 (56%), Gaps = 2/188 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+V+ TAL+ YA G + A +FD + D W AL++G+ + ++EALE F+ M
Sbjct: 168 DVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMM 227
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ V+PD T+++VL+ CA ++ +G +H ++ F N+++ N L+D+Y + G +E
Sbjct: 228 KTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVE 287
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +F+ + + ++SWN++I G+ EAL F M + +EV+ L AC+
Sbjct: 288 TASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACA 347
Query: 275 HAGLIEDG 282
H G I+ G
Sbjct: 348 HLGAIDIG 355
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 33/207 (15%)
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + A VFD ++ + W + G AL + M G+ P+ T +
Sbjct: 50 FDGLTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFL 109
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF-QRMHK-- 225
L CA + G +H +V K ++ V +L+ +Y + G E AR+VF Q H+
Sbjct: 110 LKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDV 169
Query: 226 ----------------------------RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
+ +VSWN++I G+A G EALE F M K
Sbjct: 170 VSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKT 229
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQ 284
K DE + L+AC+ + IE G Q
Sbjct: 230 NVKPDESTMVTVLSACAQSASIELGRQ 256
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 156/310 (50%), Gaps = 50/310 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------DF 93
V W S + + + E F MR+ G +T V ++ C D+
Sbjct: 144 VSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDY 203
Query: 94 PSNN-----VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK------- 139
N V + L+DMY + G + LA VFD M R W A++ G+ K
Sbjct: 204 IEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAA 263
Query: 140 ---------RDY---------------FEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
RD F EAL F+ M S V+PD +T+ SVL+ CA+
Sbjct: 264 RELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHT 323
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
+L +G H Y+ K D K ++ V N L+D+Y + G +E A +VF+ M K+ VSW SII
Sbjct: 324 GSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSII 383
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV 295
G AVNGF AL+YF+ M + V + +F G L AC+HAGL++ GL+YF+ M+K+Y +
Sbjct: 384 SGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGL 443
Query: 296 SPQIEHHGCI 305
P+++H+GC+
Sbjct: 444 KPEMKHYGCV 453
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 130/254 (51%), Gaps = 24/254 (9%)
Query: 63 EAALEFTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTALL 105
EA + M G +++T++ L CA P +++ VS AL+
Sbjct: 60 EAIRMYNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALI 119
Query: 106 DMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
+MY G + LA VFD M D W +L+ G+ + F E L F M+++GV+ D +
Sbjct: 120 NMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAV 179
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T++ V+ C ++ G+ M Y+ + + + +V + NTL+D+Y R G + AR VF +M
Sbjct: 180 TMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQM 239
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
R LVSWN++I+G+ G + A E F+ M + D +S+T +T+ S AG + L
Sbjct: 240 QWRNLVSWNAMIMGYGKAGNLVAARELFDAMS----QRDVISWTNMITSYSQAGQFTEAL 295
Query: 284 QYFDIMKKIYRVSP 297
+ F M + +V P
Sbjct: 296 RLFKEMME-SKVKP 308
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 74/149 (49%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
FW ++ G+ D EA+ + +M G+ + LT + + CA V + G +H V
Sbjct: 44 FWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARV 103
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K F+ ++ V N L+++Y G + A++VF M +R LVSWNS++ G+ E L
Sbjct: 104 LKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVL 163
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAG 277
F M+ K D V+ + AC+ G
Sbjct: 164 GVFEAMRVAGVKGDAVTMVKVVLACTSLG 192
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +FQ++H+ TL WN +I G++V+ EA+ +NLM + + +++ AC+
Sbjct: 30 AHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACA 88
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 141/252 (55%), Gaps = 38/252 (15%)
Query: 88 SGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF------------------ 129
SGC ++ +V +L++MY + G + LA VFD MR D
Sbjct: 146 SGC----ESHAIVQNSLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRK 201
Query: 130 ---------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
WTAL++G+ F A+E FR MQ+ G EPD ++I++VL CA
Sbjct: 202 ARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQ 261
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ L +G W++ Y K + +CN LM++Y++ GCIE A Q+F M ++ ++SW++
Sbjct: 262 LGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTA 321
Query: 235 IVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
I G A +G EA++ F +M + G + ++F G L+ACSHAGL+++GL+YFD MK+ Y
Sbjct: 322 IGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEY 381
Query: 294 RVSPQIEHHGCI 305
V P +EH+GC+
Sbjct: 382 GVEPSVEHYGCV 393
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 111/262 (42%), Gaps = 51/262 (19%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFW--TALLNGFVKRDYFEEALEYFRV 152
S + V+T ++ + GR A VF + + A++ + + +A+E +
Sbjct: 39 SQSSYVATQIVHVCNGHGRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVR 98
Query: 153 MQISGVEP---------DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
M +P D T +L C + +G +H +V + + + V N+L
Sbjct: 99 MLRCLPDPSSSGGFSVGDRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSL 158
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA------------------------ 239
+++Y+R G + AR+VF M ++ VSWN++I A
Sbjct: 159 IEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWT 218
Query: 240 --VNGF--VGE---ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF------ 286
V+G+ VG+ A+E F MQ F+ D+VS L AC+ G +E G +
Sbjct: 219 ALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKH 278
Query: 287 DIMKKIYRVSPQIEHH---GCI 305
++ KIY + +E + GCI
Sbjct: 279 GMLGKIYICNALMEMYAKCGCI 300
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 156/283 (55%), Gaps = 19/283 (6%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + I+ + + G EA L F MR P+ T V++LS CA +
Sbjct: 223 VKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNS 282
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
+N+ + AL+DMY+K G + A +FD M R W ++ G+
Sbjct: 283 MRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCS 342
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
++EAL FR M SGVEP +T +S+L CA++ + +G W+H Y+ K + + +
Sbjct: 343 YKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTS 402
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+Y++ G I ARQVF M ++L SWN++I G A++G +A E F+ M + +
Sbjct: 403 LIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPN 462
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
E++F G L+AC HAGL++ G Q+F M + Y++SP+ +H+GC+
Sbjct: 463 EITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCM 505
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 127/285 (44%), Gaps = 50/285 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W S I S A + F RM G P+ TF LL CA S
Sbjct: 97 WNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVL 156
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFD---------------------------- 122
++V + T+L++MYA+ G M+ A +VFD
Sbjct: 157 KLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQ 216
Query: 123 -----VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
++ W A++ G+ + +EAL F M+ + V P+ TI+SVL+ CA
Sbjct: 217 LFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNA 276
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
L +G M ++ + N+++ N L+D+YS+ G ++ AR++F M +R ++SWN +I G
Sbjct: 277 LDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGG 336
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ EAL F M + E++F L +C+H G I+ G
Sbjct: 337 YTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG 381
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 145/253 (57%), Gaps = 19/253 (7%)
Query: 72 RLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRM 114
+L P +T V+L+ CA + N+ V+ A+LDMY K +
Sbjct: 3 KLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDI 62
Query: 115 DLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC 172
+ A VF+ +R D WT++L+G K YF+E+L FR MQ+ +EPD +T++ VL+ C
Sbjct: 63 ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSAC 122
Query: 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
A L G ++H + K + ++ + L+D+Y++ G I+ A QVF+RM R + +WN
Sbjct: 123 AQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWN 182
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
++I G A++G +A+ F+ M+ D+V+F L ACSHAGL+++GL F MK
Sbjct: 183 AMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNK 242
Query: 293 YRVSPQIEHHGCI 305
+++ P++EH+GC+
Sbjct: 243 FQIEPRMEHYGCV 255
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 120/279 (43%), Gaps = 59/279 (21%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------ 92
+ WTS +S +SG E+ F +M+L+ P IT V +LS CA
Sbjct: 77 VLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHL 136
Query: 93 ----FPSN-NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
F N ++++ TAL+DMYAK G +DLA VF MR + W A++ G + E+
Sbjct: 137 LIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGED 196
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F M+ + PD +T I++L C++ + GL M + + K F+ R+
Sbjct: 197 AISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAM-KNKFQIEPRM------ 249
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+GC+ + R K V +AL + M K + V
Sbjct: 250 --EHYGCV---VDLLCRARK------------------VDDALAFIENMP---IKANSVL 283
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
+ L AC G +FD+ +KI R ++E C
Sbjct: 284 WATLLGACRSGG-------HFDLAEKIXRRVIELEPDSC 315
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 158/311 (50%), Gaps = 50/311 (16%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------D 92
V W + I R+CR G + EA F M+ P + ++S C D
Sbjct: 180 VVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYD 239
Query: 93 F------------------------------------PSNNVMVSTALLDMYAKFGRMDL 116
F N+ VSTA++ Y+K GR+D
Sbjct: 240 FLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDD 299
Query: 117 ATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A V+FD D WT +++ + + D+ +EAL F M SG++PD +T++SV++ C N
Sbjct: 300 ARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVN 359
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ TL W+HRY + + + N L+++Y++ G ++ AR VF++M R +VSW+S+
Sbjct: 360 LGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSM 419
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I FA++G ++L F M++ + +EV+F G L CSH+GL+E+G + F M Y
Sbjct: 420 INAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYN 479
Query: 295 VSPQIEHHGCI 305
++P+IEH+GC+
Sbjct: 480 ITPKIEHYGCM 490
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 124/272 (45%), Gaps = 23/272 (8%)
Query: 37 NSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS- 95
+S S + ++ + S + RSG L + R+R G I+F +L + +
Sbjct: 71 SSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSAL 130
Query: 96 ----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGF 137
++ V T L+DMYA GR++ A VFD M D W ++ +
Sbjct: 131 FEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERY 190
Query: 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197
+ +EA + F M+ S V PD + + ++++ C + ++ ++ + D + +
Sbjct: 191 CRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDT 250
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
+ L+ +Y+ GC++ A + F++M R L +++ G++ G + +A F+ +
Sbjct: 251 HLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTE-- 308
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
D V +T ++A + + ++ L+ F+ M
Sbjct: 309 --MKDLVCWTTMISAYAESDHPQEALRVFEEM 338
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 154/280 (55%), Gaps = 51/280 (18%)
Query: 77 NPSHITFVTLLSGCADFP-----------------SNNVMVSTALLDMYAKFG------- 112
NP TF ++L CA +N+ V +L+D+Y K G
Sbjct: 124 NPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQK 183
Query: 113 ------------------------RMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+D A +VFD M + W+ +++G+ + + + +A
Sbjct: 184 LFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADA 243
Query: 147 LEYFRVMQ-ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+E FR MQ G+ P+ +T++SVL+ CA++ L +G W+HR++ + + + + N L D
Sbjct: 244 IELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALAD 303
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ GC+ A+ VF MH+R ++SW+ II+G A+ G+ EA +F M + + +++S
Sbjct: 304 MYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDIS 363
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G LTAC+HAGL++ GL+YFD+M ++Y ++P+IEH+GC+
Sbjct: 364 FMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCV 403
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 34/187 (18%)
Query: 130 WTALLNGFVKRDYFEEALEYF--RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
+ ALL F + + + + YF +++ + PD T SVL CA + + G +H +
Sbjct: 93 YNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCF 152
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV--- 244
V K + N+ V N+L+D+Y + GC A+++F M R +VSWN++I G+ +G V
Sbjct: 153 VTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKA 212
Query: 245 ----------------------------GEALEYFNLMQ-KGVFKTDEVSFTGALTACSH 275
+A+E F MQ +G ++V+ L+AC+H
Sbjct: 213 RMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAH 272
Query: 276 AGLIEDG 282
G ++ G
Sbjct: 273 LGALDLG 279
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 153/280 (54%), Gaps = 20/280 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCA---DFP----- 94
T V W + I H + EA F RM + P+ +T V +L+ CA D
Sbjct: 150 TVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRI 209
Query: 95 ---------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYF 143
+V+++T L+D+Y K G + LA +FD + + W ++NG V+ +
Sbjct: 210 HEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNY 269
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EEAL FR MQ G++ D +T+ S+L C ++ L +G W+H Y+ KQ +V + L
Sbjct: 270 EEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTAL 329
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G IE A QVF M ++ +++W ++I+G A+ G AL+YF+ M K D
Sbjct: 330 VDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDA 389
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303
++F G L ACSHAG +++G+ +F+ M Y + P IEH+G
Sbjct: 390 ITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYG 429
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 128/272 (47%), Gaps = 21/272 (7%)
Query: 40 STIDTTVQWT-SSISRHCRSGCILEAALEF-TRMRLYGTNPSHITFVTLLSGCAD----- 92
S I +T +SI R C + + AL F M + G P TF +L C +
Sbjct: 46 SQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSEGK 105
Query: 93 ----------FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKR 140
F S+ +T L++MY+ G + A VFD M W ++ +
Sbjct: 106 QIHCHSTKLGFASDTYAQNT-LMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQW 164
Query: 141 DYFEEALEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
D EA+ F R+M+ V+P+ +T+++VL CA R L + +H Y+ + F +V +
Sbjct: 165 DQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVL 224
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
LMDVY + GC++ AR +F + ++ L SWN +I G + EAL F MQ
Sbjct: 225 NTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGI 284
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
K D+V+ L AC+H G +E G +KK
Sbjct: 285 KGDKVTMASLLLACTHLGALELGKWLHAYIKK 316
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 6/168 (3%)
Query: 112 GRMDLATVVFDVMRGCDFWT--ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
G + A +VF + +T +++ G ++ +EAL +++ M + G+ PD T S+
Sbjct: 36 GSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLF 95
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
C N G +H + K F + NTLM++YS GC+ AR+VF +M +T+V
Sbjct: 96 KSCRNSSE---GKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVV 152
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEVSFTGALTACSHA 276
SW ++I A EA+ F+ M K K +EV+ LTAC+ A
Sbjct: 153 SWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARA 200
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 151/309 (48%), Gaps = 49/309 (15%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV------- 98
V W + + R G A +M G P +T VT ++ C+ N+
Sbjct: 113 VLWNMMMRCYIRCGRFTAAVALAVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSY 172
Query: 99 ---------MVSTALLDMYAKFGRMDLATVVFDVM------------------------- 124
V+ ALLDMY K G ++ A +F+ M
Sbjct: 173 MDGVFGFSLPVANALLDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGYGIAGQLDKAR 232
Query: 125 --------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR 176
+ WT+++N V+ FEEAL FR MQ+ VEPD T++++L CAN+
Sbjct: 233 VFFYQCTQKDLILWTSMINACVQHGSFEEALILFRDMQLQRVEPDKFTVVTLLTCCANIG 292
Query: 177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIV 236
L G W+H+Y ++ K + + L+++YS+ G ++ + Q+F RM + +W +II
Sbjct: 293 ALDQGEWIHQYAESRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIIC 352
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
G A NG +ALE F MQ+ K D ++F G L+AC H GL+++G +YF MK++Y +
Sbjct: 353 GLATNGQASKALELFEEMQRSKTKPDGITFIGVLSACCHGGLVDEGQRYFQAMKEVYHIE 412
Query: 297 PQIEHHGCI 305
P+IEH+ C+
Sbjct: 413 PRIEHYSCL 421
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 105/204 (51%), Gaps = 10/204 (4%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+ + +L++MY GR D A VFD M R W ++ +++ F A+ M+
Sbjct: 80 DAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAVQME 139
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
G PD +T+++ + C+ L +G +H Y+ F ++ V N L+D+Y++ G +E
Sbjct: 140 SGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGV-FGFSLPVANALLDMYTKNGYLE 198
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTAC 273
A ++F++M +R ++SW ++ G+ + G + +A +F QK D + +T + AC
Sbjct: 199 EAVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQCTQK-----DLILWTSMINAC 253
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSP 297
G E+ L F M ++ RV P
Sbjct: 254 VQHGSFEEALILFRDM-QLQRVEP 276
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 3/173 (1%)
Query: 124 MRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
+R C+ L+ +R F + + ++ G+ D T VL ++ G
Sbjct: 11 LRDCNV---LIRTLARRGSFSRVMAVYYDLRARGLAADSYTYPFVLRAIGTMKLSVEGRK 67
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H K F+ + +LM++Y+ G + AR+VF M +R LV WN ++ + G
Sbjct: 68 VHAAAVKTGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRCGR 127
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
A+ M+ G D V+ A+TACS AG + G + M ++ S
Sbjct: 128 FTAAVALAVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGVFGFS 180
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 140/216 (64%), Gaps = 2/216 (0%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ +V+ +LL YA+ G+M A +F +M + WTA+++G+ + EA+++
Sbjct: 169 EMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDF 228
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
FR MQ++G+EPD +++ISVL CA++ +L +G W+H Y ++ VCN L+++YS+
Sbjct: 229 FREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSK 288
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G + A Q+F++ + ++SW+++I G+A +G A E F MQ+ K + ++F G
Sbjct: 289 CGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGL 348
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH GL + GL+YFD+M++ Y++ P+IEH+GC+
Sbjct: 349 LSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCL 384
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 31/231 (13%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T V WT+ IS + GC +EA F M+L G P I+ +++L CA S
Sbjct: 205 TIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIH 264
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
V AL++MY+K G + A +F+ +G D W+ +++G+
Sbjct: 265 MYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAH 324
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH--RY--VPKQDFKDNVRV- 199
A E F MQ + V+P+ +T + +L+ C++V GLW +Y + +QD++ ++
Sbjct: 325 RAFETFIEMQRAKVKPNGITFLGLLSACSHV-----GLWQQGLKYFDMMRQDYQIEPKIE 379
Query: 200 -CNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEAL 248
L+DV +R G +E A ++ + M K W S++ G + AL
Sbjct: 380 HYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVAL 430
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 105/222 (47%), Gaps = 34/222 (15%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
S + + T ++D+ K G MD AT +F+ + + + +++ + + + + ++
Sbjct: 39 SQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQ 98
Query: 153 MQISGVE-PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
+ +E PD T + CA++ + +G +H ++ K + +V N L+D+Y +F
Sbjct: 99 LLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFD 158
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFA--------------------------VNGFVG 245
+ A +VF M +R ++SWNS++ G+A ++G+ G
Sbjct: 159 DLVDAHKVFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTG 218
Query: 246 -----EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
EA+++F MQ + DE+S L +C+H G +E G
Sbjct: 219 IGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELG 260
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 145/247 (58%), Gaps = 19/247 (7%)
Query: 78 PSHITFVTLLSGCADFP-----------------SNNVMVSTALLDMYAKFGRMDLATVV 120
P IT T+LS CA +N++VSTA+L+MY K G +D +V
Sbjct: 4 PBEITLATVLSICAKLGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLV 63
Query: 121 FDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL 178
FD M R W+A++ G+ + EALE F M+ + ++P+ +T++SVL+ CA + ++
Sbjct: 64 FDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGSV 123
Query: 179 GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF 238
G + YV + NV V + L+ +YS+ G I ARQ+F ++ +R V+WNS+I+G
Sbjct: 124 ETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGL 183
Query: 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ 298
A+NGF +A+ +N M++ K + ++F G LTAC+HAG +E GL++F M+ + +SP
Sbjct: 184 AINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEFFRSMRSDHNISPN 243
Query: 299 IEHHGCI 305
IEH CI
Sbjct: 244 IEHFACI 250
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 10/147 (6%)
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
EPB +T+ +VL++CA + L +GL + + ++ N+ V ++++Y + G ++ R
Sbjct: 3 EPBEITLATVLSICAKLGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRL 62
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF M +R +V W+++I G+A NG EALE F M+ K ++V+ L+AC+ G
Sbjct: 63 VFDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGS 122
Query: 279 IEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+E G R+ +E G I
Sbjct: 123 VETG----------ERIGSYVESRGLI 139
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 137/216 (63%), Gaps = 7/216 (3%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
D + NVM++ Y K G + A +FD M R WT ++ G+ + EEA+E
Sbjct: 144 DVVAWNVMIAG-----YVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEV 198
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
FR MQ+ G+EPD + ++SVL+ C ++ + +G W+HR+V ++ + + + N+++D+Y +
Sbjct: 199 FRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMK 258
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
GCIE A +VF+ M ++++V+W ++I GFA++G +A+E F M++ ++V+F
Sbjct: 259 CGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAI 318
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH GL + G YF+IM YR+ PQ+EH+GC+
Sbjct: 319 LSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCM 354
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 21/219 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V WT+ I + + EA F RM++ G P + +++LS C D +
Sbjct: 176 VVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHR 235
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+ + +++DMY K G ++ A VF+ M + WT L+ GF +
Sbjct: 236 FVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQ 295
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW-MHRYVPKQDFKDNVRVCNTLM 204
A+E FR M+ + P+ +T +++L+ C++V +G W + V + K V ++
Sbjct: 296 AVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMV 355
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
D+ R GC++ A+ + + M K W +++ +G
Sbjct: 356 DLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTHG 394
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 156/280 (55%), Gaps = 22/280 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-------- 96
V WT+ +S R G EA + +M + P+ T +L C +
Sbjct: 179 VVSWTALVSAFVRGGRFAEALVLVGQMDVV---PNEGTLACVLVACGRLGAARAGKAVHG 235
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEE 145
++V A+LDMY K ++DLA VFD ++R WT +++G V+ +
Sbjct: 236 WYLRRESDLKLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQCKLPSK 295
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
ALE F MQ S V+PD + + +VL+ C ++ L G W+H Y+ ++ + +V V +L+D
Sbjct: 296 ALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWDVHVGTSLVD 355
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ GC+E + +F++M + L SWN++I GFA++G EALE+F+ M +EVS
Sbjct: 356 MYAKCGCLETSLSIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMVASGLAPNEVS 415
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L AC H+GL+++GLQ F+ MK Y++SP EH+G +
Sbjct: 416 FIIVLGACCHSGLVQEGLQLFESMKNSYKLSPWEEHYGSV 455
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 9/129 (6%)
Query: 160 PDYLTIISVLNVCANVRTLGI------GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
PD T+ + L CA + G G +H K F + V N L+ +Y G
Sbjct: 105 PDGYTLPATLKACARLGAGGDDGGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGEC 164
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
AR+VF M R +VSW +++ F G EAL M +E + L AC
Sbjct: 165 GDARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLVGQMD---VVPNEGTLACVLVAC 221
Query: 274 SHAGLIEDG 282
G G
Sbjct: 222 GRLGAARAG 230
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 149/281 (53%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
V WT+ I+ + SG EA F ++ G P + V +L+ CA
Sbjct: 179 NVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWID 238
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
NV V+T+LLDMY K G ++ A ++F M D W+ ++ G+ +
Sbjct: 239 RYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQ 298
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+AL+ F MQ ++PD T++ VL+ CA + L +G+W + + +F N + L+
Sbjct: 299 QALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALI 358
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+YS+ G + A ++F M K+ V WN+++VG ++NG F+L++K + DE
Sbjct: 359 DMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDEN 418
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L C+H G + +G Q+F+ MK+++ ++P IEH+GC+
Sbjct: 419 TFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCM 459
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 127/263 (48%), Gaps = 19/263 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---------------- 91
W + I C +A + MR G P++ T +L CA
Sbjct: 82 WNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLV 141
Query: 92 -DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
++V V T+LL +Y K D A VFD + + WTA++ G++ +F EA+
Sbjct: 142 KAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIG 201
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F+ + G++PD +++ VL CA + G W+ RY+ NV V +L+D+Y
Sbjct: 202 AFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYV 261
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G +E A +F M ++ +VSW+++I G+A NG +AL+ F MQ K D + G
Sbjct: 262 KCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVG 321
Query: 269 ALTACSHAGLIEDGLQYFDIMKK 291
L+AC+ G ++ G+ +M +
Sbjct: 322 VLSACATLGALDLGIWASSLMDR 344
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 2/169 (1%)
Query: 111 FGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
FG + + +VF ++ + W ++ G V +D F++A+ + M+ G P+ TI V
Sbjct: 61 FGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFV 120
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L CA + +GL +H + K + +V V +L+ +Y + + A +VF + + +
Sbjct: 121 LKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV 180
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
VSW +II G+ +G EA+ F + + K D S L AC+ G
Sbjct: 181 VSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLG 229
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 130/205 (63%), Gaps = 2/205 (0%)
Query: 103 ALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
+L+ + + G+M A VFD M R WT ++NG+ + + +AL FR MQ+ G+EP
Sbjct: 177 SLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEP 236
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D +++ISVL CA + L +G W+H+Y K F N V N L+++Y++ GCI+ A +F
Sbjct: 237 DEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLF 296
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
+M ++ ++SW+++I G A +G A+ F MQK + V+F G L+AC+HAGL
Sbjct: 297 NQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWN 356
Query: 281 DGLQYFDIMKKIYRVSPQIEHHGCI 305
+GL+YFD+M+ Y + PQIEH+GC+
Sbjct: 357 EGLRYFDVMRVDYHLEPQIEHYGCL 381
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 31/218 (14%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T V WT+ I+ + R GC +A F M++ G P I+ +++L CA +
Sbjct: 202 TIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIH 261
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
N V AL++MYAK G +D A +F+ M D W+ ++ G
Sbjct: 262 KYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGY 321
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH--RY--VPKQDF--KDNVR 198
A+ F MQ +GV P+ +T + VL+ CA+ GLW RY V + D+ + +
Sbjct: 322 AAIRVFEDMQKAGVTPNGVTFVGVLSACAHA-----GLWNEGLRYFDVMRVDYHLEPQIE 376
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSII 235
L+D+ R G +E A +M + +WNS++
Sbjct: 377 HYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLL 414
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 34/215 (15%)
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVKRDYFEEALEYF-RVMQISGV 158
T +LD+ +D AT++F + + ++ A++ + A+ F +++
Sbjct: 43 TKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSA 102
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
PD T V+ CA + +G +H +V K K + N L+D+Y++ G + A Q
Sbjct: 103 SPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQ 162
Query: 219 VFQRMHKRTLVSWNSIIV-------------------------------GFAVNGFVGEA 247
V++ M +R VSWNS+I G+A G +A
Sbjct: 163 VYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADA 222
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
L F MQ + DE+S L AC+ G +E G
Sbjct: 223 LGIFREMQVVGIEPDEISVISVLPACAQLGALEVG 257
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 126/210 (60%), Gaps = 2/210 (0%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQI 155
V V L+ MYA G + A +F++M R W +++NG+ EAL FR M +
Sbjct: 175 VFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGL 234
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
GVEPD T++S+L+ CA + L +G H Y+ K N+ N L+D+Y++ G I
Sbjct: 235 RGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQ 294
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
A +VF M ++++VSW S+IVG AVNGF EALE F +++ E++F G L ACSH
Sbjct: 295 AHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 354
Query: 276 AGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G++++G YF MK+ Y + P+IEH+GC+
Sbjct: 355 CGMVDEGFDYFKRMKEEYGIVPKIEHYGCM 384
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 84/163 (51%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W ++ G+ + + ALE +R M +S +EPD T +L A + + G +H
Sbjct: 108 WNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAI 167
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
+ F+ V V NTL+ +Y+ G E A ++F+ M +R LV+WNS+I G+A+NG EAL
Sbjct: 168 RNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALT 227
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
F M + D + L+AC+ G + G + M K+
Sbjct: 228 LFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKV 270
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I+ + +G EA F M L G P T V+LLS CA+ +
Sbjct: 207 VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 266
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N+ ALLD+YAK G + A VFD M + WT+L+ G + +EA
Sbjct: 267 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEA 326
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMD 205
LE F+ ++ G+ P +T + VL C++ + G + R + + ++D
Sbjct: 327 LELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVD 386
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVG 245
+ R G ++ A + Q M + V W +++ ++G +
Sbjct: 387 LLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLA 427
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 157/285 (55%), Gaps = 21/285 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + IS + +G EA F M P T VT+LS CA S
Sbjct: 160 VKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQ 219
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ + AL+D+Y+K G+++ A +F+ + D W L+ G+ +
Sbjct: 220 VHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNL 279
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ--DFKDNVRVC 200
++EAL F+ M SG P+ +TI+S+L CA++ + IG W+H Y+ K+ D + +
Sbjct: 280 YKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLR 339
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+L+D+Y++ G IE A QVF M ++L SWN++I GFA++G + F+ M+K +
Sbjct: 340 TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIE 399
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSH+G ++ G F M + Y ++P++EH+GC+
Sbjct: 400 PDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCM 444
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 107/188 (56%), Gaps = 2/188 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+V+ TAL+ YA G + A +FD + D W A+++G+ + ++EALE F+ M
Sbjct: 131 DVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMM 190
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ V PD T+++VL+ CA R++ +G +H ++ F N+++ N L+D+YS+ G +E
Sbjct: 191 KTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVE 250
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +F+ + + +VSWN++I G+ EAL F M + ++V+ L AC+
Sbjct: 251 TACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACA 310
Query: 275 HAGLIEDG 282
H G I+ G
Sbjct: 311 HLGAIDIG 318
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 31/186 (16%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W +L G+ AL+ + VM G+ P+ T +L CA + G +H +V
Sbjct: 34 WNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVL 93
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS------------------- 230
K ++ ++ V +L+ +Y++ G +E A +VF R R +VS
Sbjct: 94 KLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQE 153
Query: 231 ------------WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
WN++I G+A G EALE F M K + DE + L+AC+ +
Sbjct: 154 MFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRS 213
Query: 279 IEDGLQ 284
+E G Q
Sbjct: 214 VELGRQ 219
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 156/317 (49%), Gaps = 50/317 (15%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV 98
+S+ V W IS + RS E+ F M PS IT V++LS C+ NV
Sbjct: 179 RSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNV 238
Query: 99 -----------------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF------------ 129
++ AL+DMYA G MD A +FD M+ D
Sbjct: 239 GKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTN 298
Query: 130 ---------------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
WTA+++G+++ + F+E L FR MQ + ++PD T++S+
Sbjct: 299 LGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSI 358
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L CA++ L +G W+ Y+ K + K + V N L+D+Y G +E A ++F M R
Sbjct: 359 LTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDK 418
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
+SW ++I G A+NG+ EAL+ F+ M K DEV+ G L AC+H+G+++ G ++F
Sbjct: 419 ISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFAR 478
Query: 289 MKKIYRVSPQIEHHGCI 305
M + + P + H+GC+
Sbjct: 479 MTTQHGIEPNVAHYGCM 495
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 127/287 (44%), Gaps = 54/287 (18%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS--------GCADFP----- 94
W + I + R GC A + M G P T+ LL C
Sbjct: 87 WNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIV 146
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
S+NV V AL+ +Y+ G + +A VFD D W +++G+ + F+E+++
Sbjct: 147 KLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMK 206
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-DNVRVC-NTLMDV 206
F M+ V P +T++SVL+ C+ ++ L +G +HRYV +D K + VRV N L+D+
Sbjct: 207 LFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV--KDLKIEPVRVLENALIDM 264
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG--------------------- 245
Y+ G ++ A +F M R ++SW +I+ GF G VG
Sbjct: 265 YAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMI 324
Query: 246 ----------EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
E L F MQ K DE + LTAC+H G +E G
Sbjct: 325 DGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELG 371
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 9/187 (4%)
Query: 110 KFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
+ G M+ A +VFD M G + W ++ G+ + A+ + M GV PD T
Sbjct: 65 ELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPF 124
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
+L + G +H ++ K F NV V N L+ +YS G + AR VF R K
Sbjct: 125 LLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGD 184
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
+V+WN +I G+ + E+++ F+ M++ ++ L+ACS L+ +
Sbjct: 185 VVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSK-------LKDLN 237
Query: 288 IMKKIYR 294
+ K+++R
Sbjct: 238 VGKRVHR 244
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 159/285 (55%), Gaps = 21/285 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + IS + +GC EA F M P T+VT+LS CA S
Sbjct: 158 VKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQ 217
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ + AL+D+Y+K G ++ A +F + D W L+ G+ +
Sbjct: 218 VHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNL 277
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVC 200
++EAL F+ M SG P+ +T++SVL CA++ + IG W+H Y+ K + + +
Sbjct: 278 YKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 337
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+L+D+Y++ G IE A QVF M ++L SWN++I GFA++G + + F+ M+K +
Sbjct: 338 TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIE 397
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSH+G+++ G F M + Y+++P++EH+GC+
Sbjct: 398 PDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCM 442
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 104/188 (55%), Gaps = 2/188 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+V+ TAL+ YA G + A +FD + D W A+++G+ + ++EALE F M
Sbjct: 129 DVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMM 188
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V PD T ++VL+ CA+ ++ +G +H +V F N+++ N L+D+YS+ G +E
Sbjct: 189 KMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVE 248
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +FQ + + ++SWN++I G+ EAL F M + ++V+ L AC+
Sbjct: 249 TACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACA 308
Query: 275 HAGLIEDG 282
H G I+ G
Sbjct: 309 HLGAIDIG 316
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 33/207 (15%)
Query: 111 FGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + AT VF+ ++ + W ++ G +L + M G+ P+ T +
Sbjct: 11 FDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFL 70
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM----------DVYSRF-------- 210
L CA +T G +H V K F ++ V +L+ D Y F
Sbjct: 71 LKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDV 130
Query: 211 -------------GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
G I A+++F + + +VSWN++I G+A G EALE F M K
Sbjct: 131 VSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKM 190
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ DE ++ L+AC+H+G IE G Q
Sbjct: 191 NVRPDESTYVTVLSACAHSGSIELGRQ 217
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 154/280 (55%), Gaps = 23/280 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV------- 98
V WT IS + ++G EA F RM + P+ TFV++L C N+
Sbjct: 176 VSWTGLISGYVKTGLFNEAISLFLRMNV---EPNVGTFVSILGACGKLGRLNLGKGIHGL 232
Query: 99 ----------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+V A+LDMY K + A +FD M D WT+++ G V+ E+
Sbjct: 233 VFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRES 292
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F MQ SG EPD + + SVL+ CA++ L G W+H Y+ K +V + TL+D+
Sbjct: 293 LDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDM 352
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ GCI+ A+++F M + + +WN+ I G A+NG+ EAL+ F + + + +EV+F
Sbjct: 353 YAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTF 412
Query: 267 TGALTACSHAGLIEDGLQYFDIM-KKIYRVSPQIEHHGCI 305
TAC H GL+++G +YF+ M +Y +SP +EH+GC+
Sbjct: 413 LAVFTACCHNGLVDEGRKYFNEMTSPLYNLSPCLEHYGCM 452
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 3/150 (2%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
L++G+ A+ +R +G PD T +VL CA +G H K
Sbjct: 80 LISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGEVRQFHSVSVKTG 139
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
++ V NTL+ VYS G A +VF+ M R +VSW +I G+ G EA+ F
Sbjct: 140 LWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISLFL 199
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M + + +F L AC G + G
Sbjct: 200 RMN---VEPNVGTFVSILGACGKLGRLNLG 226
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 158/285 (55%), Gaps = 21/285 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + IS + +G EA F M P T VT++S CA S
Sbjct: 182 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 241
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ + AL+D+Y+K G ++ A +F+ + D W L+ G+ +
Sbjct: 242 VHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNL 301
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVC 200
++EAL F+ M SG P+ +T++S+L CA++ + IG W+H Y+ K + + +
Sbjct: 302 YKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLL 361
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+L+D+Y++ G IE A+QVF M R+L SWN++I GFA++G A + F+ M+K
Sbjct: 362 TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGID 421
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSH+G+++ G F M + Y+++P++EH+GC+
Sbjct: 422 PDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCM 466
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 107/188 (56%), Gaps = 2/188 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+V+ TAL+ YA G ++ A +FD + D W A+++G+ + ++EALE F+ M
Sbjct: 153 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 212
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ V PD T+++V++ CA ++ +G +H ++ F N+++ N L+D+YS+ G +E
Sbjct: 213 KTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVE 272
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +F+ + + ++SWN++I G+ EAL F M + ++V+ L AC+
Sbjct: 273 TACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACA 332
Query: 275 HAGLIEDG 282
H G I+ G
Sbjct: 333 HLGAIDIG 340
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 33/207 (15%)
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + A VF+ ++ + W + G AL + M G+ P+ T +
Sbjct: 35 FDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFL 94
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L CA + G +H +V K + ++ V +L+ +Y + G +E AR+VF + R +
Sbjct: 95 LKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDV 154
Query: 229 VSWNSIIVGFAVNGFV-------------------------------GEALEYFNLMQKG 257
VS+ ++I G+A G++ EALE F M K
Sbjct: 155 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 214
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ DE + ++AC+ +G IE G Q
Sbjct: 215 NVRPDESTMVTVVSACAQSGSIELGRQ 241
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 146/252 (57%), Gaps = 6/252 (2%)
Query: 57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDL 116
RSGC A ++ + + +Y T G +V+ L+ +A+ G+M
Sbjct: 144 RSGCESHAVVQNSLIEMYTRCGDLSTARKAFDG---MREKDVVSWNTLISAHARMGQMRR 200
Query: 117 ATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A +F M + WTAL++G+ F A+E FR+MQ+ G EPD ++I++VL CA
Sbjct: 201 ARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAVLPACAQ 260
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ L +G W++ Y K V +CN LM++Y++ GCIE A Q+F M ++ ++SW++
Sbjct: 261 LGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTA 320
Query: 235 IVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
I G A +G EA+ F +M ++G + ++F G L+ACSHAGL+++GL+Y D MK+ Y
Sbjct: 321 IGGLAAHGRAREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRYLDQMKEDY 380
Query: 294 RVSPQIEHHGCI 305
V P +EH+GC+
Sbjct: 381 GVEPGVEHYGCV 392
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 40/185 (21%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D T +L C + +G +H +V + + + V N+L+++Y+R G + AR+ F
Sbjct: 115 DRFTYPFLLKACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAF 174
Query: 221 QRMHKRTLVSWNSIIVGFA--------------------------VNGF--VGE---ALE 249
M ++ +VSWN++I A V+G+ VG+ A+E
Sbjct: 175 DGMREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVE 234
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF------DIMKKIYRVSPQIEHH- 302
F LMQ F+ D+VS L AC+ G +E G + ++ K+Y + +E +
Sbjct: 235 VFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYA 294
Query: 303 --GCI 305
GCI
Sbjct: 295 KCGCI 299
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 149/261 (57%), Gaps = 21/261 (8%)
Query: 66 LEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMY 108
L + M YG P+ TF +L GCA S +V V L+ MY
Sbjct: 111 LFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMY 170
Query: 109 AKFGR--MDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
G + A VFD D W+A++ GFV+ A++ FR MQ+ GV PD +T
Sbjct: 171 CCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEIT 230
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
++SVL+ CA++ L +G W+ YV K++ +V +CN L+D++++ G ++ A ++F++M
Sbjct: 231 MVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMD 290
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
RT+VSW S+I G A++G +A+ F+ M + D+V+F G L+ACSH+GL++ G
Sbjct: 291 SRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRY 350
Query: 285 YFDIMKKIYRVSPQIEHHGCI 305
YF M++ + + P++EH+GC+
Sbjct: 351 YFGSMERNFSIVPKVEHYGCM 371
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 2/145 (1%)
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
RD + ++R M GV P+ T VL CA + +L +G +H V K F+++V V
Sbjct: 103 RDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHV 162
Query: 200 CNTLMDVYSRFG--CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
NTL+ +Y G EFA +VF K V+W+++I GF G A++ F MQ
Sbjct: 163 LNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVM 222
Query: 258 VFKTDEVSFTGALTACSHAGLIEDG 282
DE++ L+AC+ G +E G
Sbjct: 223 GVCPDEITMVSVLSACADLGALELG 247
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 116/275 (42%), Gaps = 55/275 (20%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
TV W++ I+ R GC A F M++ G P IT V++LS CAD +
Sbjct: 193 TVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVES 252
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+V + AL+DM+AK G +D A +F M R WT+++ G +
Sbjct: 253 YVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLD 312
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F M +G+ PD + I VL+ C++ + G RY
Sbjct: 313 AVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKG----RYY----------------- 351
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
FG +E + ++ + ++ GFV EA E+ +QK F+ +++
Sbjct: 352 ----FGSMERNFSIVPKVEH-----YGCMVDLLCRGGFVKEAFEF---VQKMPFEPNQII 399
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIE 300
+ +TAC G ++ G I K++ + P E
Sbjct: 400 WRTIITACHATGELKLGES---ISKELIKSEPMHE 431
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 151/279 (54%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC---ADFPSN------ 96
WT++IS + G EA F R+ G P + V +LS C D S
Sbjct: 175 ASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEY 234
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
NV V+TAL+D Y K G M+ A VFD M + W++++ G+ +EA
Sbjct: 235 ITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEA 294
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F M G++PD ++ VL CA + L +G W + +F DN + L+D+
Sbjct: 295 LDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDM 354
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G ++ A +VF+ M K+ V WN+ I G A++G V +AL F M+K K D +F
Sbjct: 355 YAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTF 414
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L AC+HAGL+E+G +YF+ M+ ++ ++P+IEH+GC+
Sbjct: 415 VGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCM 453
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 19/242 (7%)
Query: 60 CILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-----------------NVMVST 102
C E+ + MR G +P TF +L CA + + V
Sbjct: 88 CFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKI 147
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
+L+++Y K G +D A VFD + +F WTA ++G+V EA++ FR + G+ P
Sbjct: 148 SLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRP 207
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D +++ VL+ C L G W+ Y+ + NV V L+D Y + G +E AR VF
Sbjct: 208 DSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVF 267
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
M ++ +VSW+S+I G+A NG EAL+ F M K D + G L +C+ G +E
Sbjct: 268 DGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALE 327
Query: 281 DG 282
G
Sbjct: 328 LG 329
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 76/154 (49%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
+ ++ G V D F+E++E + M+ G+ PD T VL CA V +G+ MH V
Sbjct: 75 LFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLV 134
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K + + V +L+++Y++ G I+ A +VF + + SW + I G+ G EA+
Sbjct: 135 VKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAI 194
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ F + + + D S L+AC G + G
Sbjct: 195 DMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSG 228
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 149/279 (53%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WT+ I+ + SG EA F ++ G P + V +L+ CA
Sbjct: 181 VSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRY 240
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
NV V+T+LLDMY K G ++ A ++F M D W+ ++ G+ ++A
Sbjct: 241 ISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQA 300
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F MQ ++PD T++ VL+ CA + L +G+W + + +F N + L+D+
Sbjct: 301 LDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDM 360
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
YS+ G + A ++F M ++ V WN+++VG ++NG F+L++K + DE +F
Sbjct: 361 YSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTF 420
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L C+H G + +G Q+F+ MK+++ ++P IEH+GC+
Sbjct: 421 IGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCM 459
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 127/263 (48%), Gaps = 19/263 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---------------- 91
W + I C +A + MR G P++ T +L CA
Sbjct: 82 WNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLV 141
Query: 92 -DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
++V V T+LL +Y K D A VFD + + WTA++ G++ +F EA+
Sbjct: 142 KAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIG 201
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F+ + G++PD +++ VL CA + G W+ RY+ NV V +L+D+Y
Sbjct: 202 AFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYV 261
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G +E A +F M ++ +VSW+++I G+A NG +AL+ F MQ K D + G
Sbjct: 262 KCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVG 321
Query: 269 ALTACSHAGLIEDGLQYFDIMKK 291
L+AC+ G ++ G+ +M +
Sbjct: 322 VLSACATLGALDLGIWASSLMDR 344
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 2/169 (1%)
Query: 111 FGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
FG + + +VF ++ + W ++ G V +D F++A+ + M+ G P+ TI V
Sbjct: 61 FGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFV 120
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L CA + +GL +H + K + +V V +L+ +Y + + A +VF + + +
Sbjct: 121 LKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV 180
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
VSW +II G+ +G EA+ F + + K D S L AC+ G
Sbjct: 181 VSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLG 229
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 127/210 (60%), Gaps = 2/210 (0%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
V V +LL +YA G + A VF++M+ D W +++NGF EAL FR M +
Sbjct: 153 VFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSV 212
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
GVEPD T++S+L+ A + L +G +H Y+ K N V N+L+D+Y++ G I
Sbjct: 213 EGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIRE 272
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
A++VF M +R VSW S+IVG AVNGF EALE F M+ E++F G L ACSH
Sbjct: 273 AQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSH 332
Query: 276 AGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G++++G +YF MK+ + P+IEH+GC+
Sbjct: 333 CGMLDEGFEYFRRMKEECGIIPRIEHYGCM 362
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 8/174 (4%)
Query: 114 MDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPD---YLTIISV 168
M A VF V+ + W ++ G+ + D A ++R M +S VEPD Y ++
Sbjct: 68 MSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKA 127
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
++ NVR G +H + F+ V V N+L+ +Y+ G E A +VF+ M +R L
Sbjct: 128 ISKSLNVRE---GEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDL 184
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
V+WNS+I GFA+NG EAL F M + D + L+A + G +E G
Sbjct: 185 VAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELG 238
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 21/221 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W S I+ +G EA F M + G P T V+LLS A+
Sbjct: 185 VAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVY 244
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
S N V+ +LLD+YAK G + A VF M R WT+L+ G + EEA
Sbjct: 245 LLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEA 304
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLMD 205
LE F+ M+ G+ P +T + VL C++ L G R + ++ + ++D
Sbjct: 305 LELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVD 364
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVG 245
+ SR G ++ A + Q M + V W +++ ++G +G
Sbjct: 365 LLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLG 405
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 131/215 (60%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
PS NV+ T L+ YA G++D A ++F D WTA++N +V+ F EAL F
Sbjct: 207 MPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLF 266
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R MQ+ +EPD T++++L CAN+ L G +H++ ++ K + + L+D+Y++
Sbjct: 267 RDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAVLGTALIDMYAKC 326
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G +E + +VF+RM R +W +II G A NG G ALE F M++ K D V+F G L
Sbjct: 327 GHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPDSVTFIGVL 386
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+AC H GL+++G + F MK++YR+ P++EH+ C+
Sbjct: 387 SACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCL 421
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 104/204 (50%), Gaps = 10/204 (4%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+ +++L+DMY GR++ A VFD M R W +L +V+ EA+ M+
Sbjct: 80 DAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEME 139
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNVRVCNTLMDVYSRFGCI 213
+ PD +T+++ L C+ L +G +H Y+ F ++ V N L+D+Y + GC+
Sbjct: 140 RGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGF--SLPVANALLDMYVKNGCL 197
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A +F++M R +VSW +++ G+A G V +A F+ + D + +T + A
Sbjct: 198 EEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFH----QCTEKDLIMWTAMINAY 253
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSP 297
G + L F M +++++ P
Sbjct: 254 VQHGCFIEALSLFRDM-QMHQIEP 276
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 24/222 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ I+ + + GC +EA F M+++ P T VTLL+ CA+ +
Sbjct: 244 IMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQF 303
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+ ++ TAL+DMYAK G ++ + VF+ M G D WTA++ G A
Sbjct: 304 AEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRA 363
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV--CNTLM 204
LE F M+ S +PD +T I VL+ C + + G R + K+ ++ RV + L+
Sbjct: 364 LELFEDMERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAM-KEVYRIRPRVEHYSCLV 422
Query: 205 DVYSRFGCIEFARQVFQR--MHKRTLVSWNSIIVGFAVNGFV 244
++ R G ++ A ++ + ++K + + ++I G V
Sbjct: 423 NLLGRAGQLDEAEKLIKSIPINKDAMPLFGALITACKAQGNV 464
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 3/169 (1%)
Query: 124 MRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
+R C+ L+ +R + + + ++ G+ D T VL ++ G
Sbjct: 11 LRECNL---LIRTLARRSSHADVMAVYYDLRERGLVADSFTYPFVLRAIGALQISVEGRK 67
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
H K F+ + ++LMD+Y+ G +E AR+VF M +R +V WN ++ + G
Sbjct: 68 AHAATLKTGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGR 127
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
EA+ M++G D V+ ALTACS AG + G + M +
Sbjct: 128 NTEAVALAEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGV 176
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 154/279 (55%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + ++ + ++G +E F M G +T V++++ C
Sbjct: 187 VMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGH 246
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ N + TAL+DMYAK G + A +FD M+ D W+A+++G+ + D EA
Sbjct: 247 VDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREA 306
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F MQ++ VEP+ +T++SVL+ CA + L G W+H YV ++ + L+D
Sbjct: 307 LGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDF 366
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ GCI+ A + F+ M + +W ++I G A NG EALE F+ M++ + +V+F
Sbjct: 367 YAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTF 426
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSH+ L+E+G ++FD M + Y + P++EH+GC+
Sbjct: 427 IGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCM 465
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 100/185 (54%), Gaps = 2/185 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMR--GCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
V ++L+ MYA G + A +VFD G W A++ ++K + E +E F+ M G
Sbjct: 157 VLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVG 216
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
V D +T++SV+ C + +G W+ +V ++ N ++ LMD+Y++ G I AR
Sbjct: 217 VAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKAR 276
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
++F M R +V+W+++I G+ EAL F+ MQ + ++V+ L+AC+ G
Sbjct: 277 RLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLG 336
Query: 278 LIEDG 282
+E G
Sbjct: 337 ALETG 341
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 2/150 (1%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVM--QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
+ L+ F+ + E+AL F M S D T L C+ + L +G + Y
Sbjct: 86 YNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAY 145
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
K+ + V ++L+ +Y+ G + AR VF + +V WN+I+ + NG E
Sbjct: 146 AVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEV 205
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+E F M + DEV+ +TAC G
Sbjct: 206 VEMFKGMLEVGVAFDEVTLVSVVTACGRIG 235
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 18/136 (13%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDM 107
WT+ I +G EA F+ MR G P+ +TF+ +L C S++ +V
Sbjct: 391 WTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMAC----SHSCLVEE----- 441
Query: 108 YAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
GR ++ D + + + +++ + +EA ++ R M I EP+ +
Sbjct: 442 ----GRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPI---EPNAVIW 494
Query: 166 ISVLNVCANVRTLGIG 181
++L+ CA R +GIG
Sbjct: 495 RALLSSCAVHRNVGIG 510
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 156/310 (50%), Gaps = 50/310 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
+ W IS + + G E+ F M P+ +T V +LS C+
Sbjct: 206 ITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSY 265
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF------------------- 129
+N+++ A++DMYA G MD A +F M D
Sbjct: 266 VKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVA 325
Query: 130 --------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
WTA+++G+++ + F+EALE FR MQ + V+PD T++SVL CA++
Sbjct: 326 RNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHL 385
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
L +G W+ Y+ + K+++ V N L+D+Y + G ++ A +F+ M +R +W ++I
Sbjct: 386 GALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMI 445
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV 295
VG AVNG +AL+ F+ M K DE+++ G L+AC+H GL++ G +YF M + +
Sbjct: 446 VGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGI 505
Query: 296 SPQIEHHGCI 305
P I H+GC+
Sbjct: 506 EPNIAHYGCL 515
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 108/219 (49%), Gaps = 33/219 (15%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
NV V TAL+ MY G++D A VFDV D W +++ + K FEE+ F VM+
Sbjct: 173 NVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVME 232
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V P +T++ VL+ C+ ++ L G +H YV + N+ + N ++D+Y+ G ++
Sbjct: 233 DKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMD 292
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFA--------------------------VNGFV---- 244
A +F+ M+ R ++SW +I+ GF ++G++
Sbjct: 293 SALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNR 352
Query: 245 -GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
EALE F MQ K DE + LTAC+H G +E G
Sbjct: 353 FKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG 391
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 2/183 (1%)
Query: 110 KFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
++G A +FD + + W ++ G+ + D+ + + + M GV+PD T
Sbjct: 85 EYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPF 144
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
+ L G +H +V K + NV V L+ +Y G ++ AR VF K
Sbjct: 145 LFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKAD 204
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
+++WN II + G E+ F +M+ V+ L+ACS + G +
Sbjct: 205 VITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHS 264
Query: 288 IMK 290
+K
Sbjct: 265 YVK 267
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 156/310 (50%), Gaps = 50/310 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
+ W IS + + G E+ F M P+ +T V +LS C+
Sbjct: 185 ITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSY 244
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF------------------- 129
+N+++ A++DMYA G MD A +F M D
Sbjct: 245 VKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVA 304
Query: 130 --------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
WTA+++G+++ + F+EALE FR MQ + V+PD T++SVL CA++
Sbjct: 305 RNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHL 364
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
L +G W+ Y+ + K+++ V N L+D+Y + G ++ A +F+ M +R +W ++I
Sbjct: 365 GALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMI 424
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV 295
VG AVNG +AL+ F+ M K DE+++ G L+AC+H GL++ G +YF M + +
Sbjct: 425 VGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGI 484
Query: 296 SPQIEHHGCI 305
P I H+GC+
Sbjct: 485 EPNIAHYGCL 494
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 108/219 (49%), Gaps = 33/219 (15%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
NV V TAL+ MY G++D A VFDV D W +++ + K FEE+ F VM+
Sbjct: 152 NVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVME 211
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V P +T++ VL+ C+ ++ L G +H YV + N+ + N ++D+Y+ G ++
Sbjct: 212 DKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMD 271
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFA--------------------------VNGFV---- 244
A +F+ M+ R ++SW +I+ GF ++G++
Sbjct: 272 SALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNR 331
Query: 245 -GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
EALE F MQ K DE + LTAC+H G +E G
Sbjct: 332 FKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG 370
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 2/167 (1%)
Query: 110 KFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
++G A +FD + + W ++ G+ + D+ + + + M GV+PD T
Sbjct: 64 EYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPF 123
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
+ L G +H +V K + NV V L+ +Y G ++ AR VF K
Sbjct: 124 LFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKAD 183
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
+++WN II + G E+ F +M+ V+ L+ACS
Sbjct: 184 VITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACS 230
>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 872
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 151/280 (53%), Gaps = 16/280 (5%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV--- 98
+ V WT+ IS ++ EA F+ M+ G P+ T+ +L+ + V
Sbjct: 363 LGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQ 422
Query: 99 ----------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
V TALLD Y K G++D A VF + D W+A+L G+ + E A
Sbjct: 423 VVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAA 482
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCA-NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
++ F + GV+P+ T S+LNVCA ++G G H + K ++ V + L+
Sbjct: 483 IKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLT 542
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G IE A +VF+R ++ LVSWNS+I G+A +G +AL+ F M+K K D V+
Sbjct: 543 MYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVT 602
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G AC+HAGL+E+G +YFDIM + +++P EH+ C+
Sbjct: 603 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCM 642
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 92/182 (50%), Gaps = 2/182 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++V V T+L+D Y K VFD M R WT L++G+ + EE L F M
Sbjct: 130 DDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRM 189
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q G +P+ T + L V A G GL +H V K + V N+L+++Y + G +
Sbjct: 190 QDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNV 249
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
AR +F + +++V+WNS+I G+A NG EAL F M+ + E SF + C
Sbjct: 250 RKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLC 309
Query: 274 SH 275
++
Sbjct: 310 AN 311
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 124/262 (47%), Gaps = 36/262 (13%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------ 92
K+ + + V W S IS + +G LEA F MRL S +F +++ CA+
Sbjct: 258 KTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRF 317
Query: 93 --------------FPSNNVMVSTALLDMYAKFGRMDLATVVFD---VMRGCDFWTALLN 135
F N + TAL+ Y+K M A +F + WTA+++
Sbjct: 318 TEQLHCSVVKYGFVFDQN---IRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMIS 374
Query: 136 GFVKRDYFEEALEYFRVMQISGVEPD---YLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
GF++ D EEA+ F M+ GV P+ Y I++ L V + +H V K +
Sbjct: 375 GFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSE-------VHAQVVKTN 427
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
++ + V L+D Y + G ++ A +VF + + +V+W++++ G+A G A++ F+
Sbjct: 428 YERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFS 487
Query: 253 LMQKGVFKTDEVSFTGALTACS 274
+ KG K +E +F+ L C+
Sbjct: 488 ELTKGGVKPNEFTFSSILNVCA 509
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 20/247 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WT+ IS + R+ E F RM+ GT P+ TF L A+
Sbjct: 164 VTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTV 223
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDV--MRGCDFWTALLNGFVKRDYFEEA 146
+ VS +L+++Y K G + A ++FD ++ W ++++G+ EA
Sbjct: 224 VVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEA 283
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F M+++ V + S++ +CAN++ L +H V K F + + LM
Sbjct: 284 LGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVA 343
Query: 207 YSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
YS+ + A ++F+ +VSW ++I GF N EA+ F+ M++ + +E +
Sbjct: 344 YSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFT 403
Query: 266 FTGALTA 272
++ LTA
Sbjct: 404 YSVILTA 410
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 79/167 (47%)
Query: 125 RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM 184
R + +T+LL GF + +EA F +Q G+E D SVL V A + G +
Sbjct: 60 RDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCDELFGRQL 119
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
H K F D+V V +L+D Y + + R VF M +R +V+W ++I G+A N
Sbjct: 120 HCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLN 179
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
E L F MQ + + +F AL + G+ GLQ ++ K
Sbjct: 180 EEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVK 226
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 143/251 (56%), Gaps = 22/251 (8%)
Query: 77 NPSHITFVTLLSGCADFP-----------------SNNVMVSTALLDMYAKFGRMDLATV 119
NP TF ++L CA +N+ V +L+DMY K G + LA
Sbjct: 89 NPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARH 148
Query: 120 VFDVM----RGCDFWTALLNGFVKRDYFEEALEYFRVMQ-ISGVEPDYLTIISVLNVCAN 174
+FD M R W A++ G+ + + + +A+E FR+MQ GV P+ +T++SVL CA+
Sbjct: 149 LFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAH 208
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ L +G W+ ++ +++ + + N L D+Y++ GCI AR+VF +M +R ++SW+ I
Sbjct: 209 LGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSII 268
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I G A+ G EA F M K ++V F G LTAC+HAGL++ GL F+ M K Y
Sbjct: 269 ICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYG 328
Query: 295 VSPQIEHHGCI 305
VSP++EH+GC+
Sbjct: 329 VSPKVEHYGCV 339
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 136/224 (60%), Gaps = 7/224 (3%)
Query: 84 VTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
V LLS + P +V A + +A+ G M+ A VF M G D W +L+ G+ K
Sbjct: 210 VELLS--REMPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGYTKLG 267
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
+ +ALE FR MQ SGVEP LT++SVL CA + L +G +H Y+ + + V N
Sbjct: 268 RYVQALEVFREMQDSGVEPTELTLVSVLGACAEIGELELGKGVHGYIGSKGVVADGYVGN 327
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+D+Y++ G +E ARQ+F+ M R + WN++IVGF+V+G+ +ALE F+ M+ +
Sbjct: 328 ALVDMYAKCGSLELARQLFESMSTRDITCWNAMIVGFSVHGYSRKALELFDAMR---VEP 384
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D V+F G L ACSH GL+++G YF M + Y++ P ++H+GC+
Sbjct: 385 DHVTFLGVLIACSHGGLVDEGRVYFRSMTEDYKIVPGVKHYGCM 428
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAV 240
G+ +H V K + V N L+ +Y + G + AR+VF M R VSWN+++
Sbjct: 144 GMELHGRVLKLGCGGDRYVQNALVSMYGKLGRLGDARKVFDGMPARNAVSWNALVAAHGA 203
Query: 241 NG 242
G
Sbjct: 204 TG 205
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 149/259 (57%), Gaps = 22/259 (8%)
Query: 68 FTRMRLYGT-NPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYA 109
+ RM G+ P+ T L CA P+ + V T LL++YA
Sbjct: 162 YRRMLRAGSPRPNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYA 221
Query: 110 KFGRMDLATVVFDVMRGCD---FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
K ++ LA VFD M G W+A+++G+ + EAL FR MQ GVEPD +T++
Sbjct: 222 KCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMV 281
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
SV++ CA L +G W+H Y+ ++ ++ + L+D+Y++ G IE AR VF M ++
Sbjct: 282 SVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEK 341
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
+W+++IVGFA++G V +AL F+ M + + + V+F G L+AC+H+GL+EDG +Y+
Sbjct: 342 DTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYW 401
Query: 287 DIMKKIYRVSPQIEHHGCI 305
IM+ + + P +E++GC+
Sbjct: 402 SIMQNLG-IKPSMENYGCM 419
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 135/215 (62%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
S N++V TA++ Y++ GR++ A ++FD M D W+A+++G+ + D +EAL F
Sbjct: 9 ISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLF 68
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
MQ+ G++PD +TI+SV++ CA + L W+H YV K + V N L+D+Y++
Sbjct: 69 SEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKC 128
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + AR VF++M R ++SW S+I FA++G AL++F M+ K + V+F G L
Sbjct: 129 GNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVL 188
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSHAGL+E+G + F M + ++P+ EH+GC+
Sbjct: 189 YACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCM 223
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 149/259 (57%), Gaps = 22/259 (8%)
Query: 68 FTRMRLYGT-NPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYA 109
+ RM G+ P+ T L CA P+ + V T LL++YA
Sbjct: 113 YRRMLRAGSPRPNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYA 172
Query: 110 KFGRMDLATVVFDVMRGCD---FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
K ++ LA VFD M G W+A+++G+ + EAL FR MQ GVEPD +T++
Sbjct: 173 KCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMV 232
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
SV++ CA L +G W+H Y+ ++ ++ + L+D+Y++ G IE AR VF M ++
Sbjct: 233 SVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEK 292
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
+W+++IVGFA++G V +AL F+ M + + + V+F G L+AC+H+GL+EDG +Y+
Sbjct: 293 DTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYW 352
Query: 287 DIMKKIYRVSPQIEHHGCI 305
IM+ + + P +E++GC+
Sbjct: 353 SIMQNLG-IKPSMENYGCM 370
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 138/228 (60%), Gaps = 5/228 (2%)
Query: 83 FVTLLSGCADFPS---NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGF 137
F L + C F +V+ +L+ Y K G+M+ A +FD M R WT ++ G+
Sbjct: 159 FGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGY 218
Query: 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197
+ + +AL+ FR MQ+ G+EPD ++II+VL CA + L +G W+H Y K F
Sbjct: 219 GRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKT 278
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
+CN L+++Y++ GCI+ A +F ++ ++ ++SW+++I G A +G EA++ F M K
Sbjct: 279 GICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKV 338
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+E++F G L ACSH GL ++GL+YFD+M Y + P+IEH+GC+
Sbjct: 339 RVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCL 386
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 26/228 (11%)
Query: 34 QTNNSKSTID-----TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS 88
Q N+++ D T V WT+ I+ + R GC +A F M++ G P I+ + +L
Sbjct: 192 QMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLP 251
Query: 89 GCADFPSNNV-----------------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF-- 129
CA + V + AL++MYAK G +D A +FD + D
Sbjct: 252 ACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVIS 311
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYV 188
W+ ++ G EA++ F M V P+ +T + VL C++ GL +
Sbjct: 312 WSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMS 371
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
+ + L+D+ R GC+ A +M K WNS++
Sbjct: 372 ASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLL 419
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 36/217 (16%)
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVKRDYFEEALEYFRVM---QIS 156
T +LD G + AT++F + + +T A++ + + A+ F M +
Sbjct: 46 TKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTN 105
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
V PD T V+ C + +G+ +H V K + N L+D+Y++FG + A
Sbjct: 106 SVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNA 165
Query: 217 RQVFQRMHKRTLVSWNSIIVGFA--------------------------VNGF-----VG 245
+VF+ M R ++SWNS+I G+ + G+ G
Sbjct: 166 CKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYG 225
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+AL+ F MQ + DE+S L AC+ G +E G
Sbjct: 226 DALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVG 262
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 154/271 (56%), Gaps = 23/271 (8%)
Query: 52 ISRHCRSGCILEAALEFTRMRLYGTNPSH--ITFVTLLSGC-------------ADFPSN 96
I + + G I +A L F M P+H +T+ T+++GC + P
Sbjct: 168 IHMYLKCGSITDAHLLFDEM------PNHNVVTWNTMITGCFGCGDTERARRLFGEMPER 221
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
NV A++ Y+K G +D+A +FD+M D W ++++ +V+ EALE F+ M
Sbjct: 222 NVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMM 281
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
++GV D + I S+L+ CA + L +G W+H Y+ + +++V + L+D+Y++ GCI+
Sbjct: 282 LAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCID 341
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A VF M ++ L SWN+++ G A++G ALE F M+ ++++F L+ACS
Sbjct: 342 TAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACS 401
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H G +E+G + F+ M K + ++P++EH+GC+
Sbjct: 402 HIGSVEEGWKKFNQMDKEFNITPKVEHYGCM 432
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 38/227 (16%)
Query: 97 NVMVSTALLDMYAKFGR-MDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+ ++T ++ YA R +D A VF + D WT ++ GFV+ E+ALE++ +M
Sbjct: 58 DTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLM 117
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR---- 209
+ GVE + T + VL + G +H + K F +V N L+ +Y +
Sbjct: 118 RQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSI 177
Query: 210 -------------------------FGC--IEFARQVFQRMHKRTLVSWNSIIVGFAVNG 242
FGC E AR++F M +R + SWN+++ G++ G
Sbjct: 178 TDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNVGSWNAVVGGYSKLG 237
Query: 243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
V A F+LM + D VS+ ++A G + L+ F M
Sbjct: 238 HVDIARSLFDLMP----ERDVVSWGSMISAYVQNGRAAEALELFKEM 280
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 87/187 (46%), Gaps = 18/187 (9%)
Query: 64 AALE-FTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD 122
AALE F +M G P+ ITFV +LS C+ S + + + KF +MD F+
Sbjct: 373 AALELFKQMESTGVGPNDITFVAVLSACSHIGS--------VEEGWKKFNQMDKE---FN 421
Query: 123 VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182
+ + + +++ ++ EA E R M + EP+ + ++LN C +G
Sbjct: 422 ITPKVEHYGCMVDILCRQGLINEAKEMIRTMPL---EPNVVIWGALLNACKVHGYTNVGE 478
Query: 183 WMHRYVPKQDFKDN--VRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFA 239
+ Y+ K +D + + + S++ +E R++ ++M ++ + ++SI +
Sbjct: 479 DVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMGVEKKIPGYSSIELDSV 538
Query: 240 VNGFVGE 246
V+ F E
Sbjct: 539 VHDFFAE 545
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 154/283 (54%), Gaps = 26/283 (9%)
Query: 46 VQWTSSISRHCRSGC---ILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN----- 97
V WT+ I ++G +EA +E +RL T V +LS C++ N
Sbjct: 178 VSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGR---TLVVVLSACSNLGDLNLGQKV 234
Query: 98 -------------VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
V V ALLDMY K ++ A VFD M + W A+++G +
Sbjct: 235 HSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGR 294
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+ EAL+ FR+MQ GV+PD +T++ VLN CAN+ L IG W+H Y+ + + V N
Sbjct: 295 YREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNA 354
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+Y++ G I+ A +VF+ M +R + S+ ++I G A++G A + F+ M + + +
Sbjct: 355 LLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPN 414
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
EV+F G L ACSH GL+ +G +YF M Y++ PQ EH+GC+
Sbjct: 415 EVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCM 457
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH-RYVPKQDFKDNVRVCNTLMD 205
+E+ M + G+EPD TI VL A ++ + G +H R + NV V NTLM
Sbjct: 95 MEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMR 154
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS G I ++VF R LVSW ++I F G A+E F M + D +
Sbjct: 155 LYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRT 214
Query: 266 FTGALTACSHAG 277
L+ACS+ G
Sbjct: 215 LVVVLSACSNLG 226
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 134/212 (63%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+V + A++ Y K G + A VF+ M R WT L+ G+ + + EA+E FR M
Sbjct: 186 KDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKM 245
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q+ VEPD + +++VL+ CA++ L +G W+H Y+ K V + N L+D+Y++ G I
Sbjct: 246 QLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNI 305
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A +VF+ M ++++++W+++I A++G GEA++ F M+K + +EV+F L+AC
Sbjct: 306 RRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSAC 365
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH G+++ G YFD M+ +Y++ P+IEH+GC+
Sbjct: 366 SHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCM 397
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 31/168 (18%)
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ + ++I G+ PD +I SVL + + +G +H +V V +L+
Sbjct: 106 AIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQ 165
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA-------------------------- 239
+YS G + AR++F + + + WN+++ G+
Sbjct: 166 MYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTL 225
Query: 240 VNGFVG-----EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ G+ EA+E F MQ + DE++ L+AC+ G +E G
Sbjct: 226 IAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELG 273
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 152/280 (54%), Gaps = 18/280 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSN---- 96
T+ W S I+ + G EA F +M G +P+ IT T+ S CA D +
Sbjct: 270 TSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRAR 329
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
NV+V TAL++MY K +D A FD M R W+ ++ G+ + E
Sbjct: 330 AWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHE 389
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+LE F M+ + +P+ +T++ VL+ CA + + +G + Y+ Q + + L+D
Sbjct: 390 SLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALID 449
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + AR VF RM ++ +V+WNS+I G A+NGF +A+ + M + +EV+
Sbjct: 450 MYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVT 509
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F LTAC+HAGL++ G+ +F+ MKK VSPQ+EH CI
Sbjct: 510 FVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQVEHCACI 549
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N L+ YS+ G +E AR++F M +RT SWNS+I +A G EAL F+ M +
Sbjct: 244 NCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGAS 303
Query: 261 TDEVSFTGALTACSHAGLIEDG 282
+ ++ T + C+ G ++ G
Sbjct: 304 PNAITITTVFSICAKTGDLDTG 325
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 4/158 (2%)
Query: 132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
A L+G K +E +E + G I VL CA G H + +
Sbjct: 144 AFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQSAASCQGSQTHCHALVR 203
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
+V V L+D Y++ G ++ A F+ M + + N +I G++ +G V EA F
Sbjct: 204 GMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLF 263
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
+ M + S+ + +H G + L FD M
Sbjct: 264 DSMPRRT----SASWNSMIACYAHGGEFREALTLFDQM 297
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 137/211 (64%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
N++ A++ YAK + A +FD + D W+++++G+ + ++F +ALE FR MQ
Sbjct: 253 NIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQ 312
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ V+PD + I SV++ CA++ L +G W+H YV + + K + + N+L+D+Y + G +
Sbjct: 313 RAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAK 372
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A QVF+ M ++ +SWNSII+G A NGF E+L F M F+ + V+F G L AC+
Sbjct: 373 EALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACA 432
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+A L+E+GL +F+ MK++Y + PQ++H+GC+
Sbjct: 433 NAKLVEEGLDHFESMKRLYSLEPQMKHYGCV 463
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 131/289 (45%), Gaps = 50/289 (17%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN------ 97
TT W I +S +A + + + G P ++TF +L CA + N
Sbjct: 51 TTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMH 110
Query: 98 -----------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ VS +L+ +YA G + A VFD M D W +L+ G+ + + F+
Sbjct: 111 NHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFK 170
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+ L F++MQ GV+ D +T+I V++ C + + +M RY+ + +V + NTL+
Sbjct: 171 DILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLV 230
Query: 205 DVYSRFGCIE-------------------------------FARQVFQRMHKRTLVSWNS 233
D + R G ++ AR++F ++ K+ L+SW+S
Sbjct: 231 DYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSS 290
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+I G++ +ALE F MQ+ K D + +++C+H G ++ G
Sbjct: 291 MISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG 339
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
FA +VF ++ T WN +I G A + +A+ ++ Q G D ++F L AC+
Sbjct: 39 FAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACA 98
Query: 275 HAGLIEDGLQYFDIMKKI 292
+ +G Q + + K+
Sbjct: 99 RINALNEGEQMHNHITKL 116
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 147/257 (57%), Gaps = 19/257 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAK 110
+TRM L PS+ TF +++ CAD + ++V V TAL+ Y K
Sbjct: 99 YTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGK 158
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G + A VFD MR W ++++G+ + + +EA+ F M+ GVEP+ T +SV
Sbjct: 159 CGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSV 218
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ CA++ +G W+H Y NV + +L+++Y+R G + AR+VF M +R +
Sbjct: 219 LSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNV 278
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
V+W ++I G+ NG+ +A+E F+ M++ + ++F L+AC+HAGL+ +G + F+
Sbjct: 279 VAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFES 338
Query: 289 MKKIYRVSPQIEHHGCI 305
M++ YR+ P++EHH C+
Sbjct: 339 MREEYRLVPEVEHHVCL 355
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 9/192 (4%)
Query: 89 GCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFE-E 145
GC+ F + T LL++ G + +F ++ D +T+L+ K F
Sbjct: 41 GCSRF------LLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVY 94
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+L ++ M +S V P T SV+ CA++ L G +H +V F +V V LM
Sbjct: 95 SLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMS 154
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
Y + G + AR+VF +M R++V+WNS+I G+ NGF EA+ F+ M++ + + +
Sbjct: 155 FYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSAT 214
Query: 266 FTGALTACSHAG 277
F L+AC+H G
Sbjct: 215 FVSVLSACAHLG 226
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 104/208 (50%), Gaps = 32/208 (15%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V W S IS + ++G EA F RM+ G P+ TFV++LS CA +
Sbjct: 176 SVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVH 235
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
NV++ T+L++MY + G + A VFD M R WTA+++G+ Y
Sbjct: 236 EYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGS 295
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-------HRYVPKQDFKDNV 197
+A+E F M+ +G+ P+ +T ++VL+ CA+ + G + +R VP+ +
Sbjct: 296 QAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEH---- 351
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHK 225
VC L+D+ R G ++ A + +H+
Sbjct: 352 HVC--LVDMLGRAGLLDEAYNFIKEIHE 377
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 125/208 (60%), Gaps = 2/208 (0%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISG 157
V +L+ MY+ FG + A VF++M D W +++NGF EAL +R M G
Sbjct: 173 VQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEG 232
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
VEPD T++S+L+ C + L +G +H Y+ K N N L+D+YS+ G A+
Sbjct: 233 VEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQ 292
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+VF M +R++VSW S+IVG AVNG EAL+ F +++ K E++F G L ACSH G
Sbjct: 293 KVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCG 352
Query: 278 LIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++++G YF MK+ Y + P+IEHHGC+
Sbjct: 353 MLDEGFNYFRRMKEEYGILPRIEHHGCM 380
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 6/208 (2%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P N + AL+ + A M A +F+ ++ + W ++ GF + + A+E F
Sbjct: 68 PDFNKHLIFALVSLSAP---MSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFS 124
Query: 152 VMQI-SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M S + PD T + A + + +G +H V + F V N+L+ +YS F
Sbjct: 125 QMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVF 184
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G E A QVF+ M R V+WNS+I GFA+NG EAL + M + D + L
Sbjct: 185 GFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLL 244
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQ 298
+AC G + G + M K+ V Q
Sbjct: 245 SACVELGALALGERVHMYMVKVGLVQNQ 272
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 88/218 (40%), Gaps = 21/218 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I+ +G EA + M G P T V+LLS C + +
Sbjct: 203 VAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMY 262
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N S ALLD+Y+K G A VFD M R WT+L+ G EA
Sbjct: 263 MVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEA 322
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMD 205
L+ F ++ G++P +T + VL C++ L G + R + + ++D
Sbjct: 323 LKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVD 382
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
+ R G + A + M V W +++ ++G
Sbjct: 383 LLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHG 420
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 156/317 (49%), Gaps = 50/317 (15%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN- 97
KS + V W S I+ + R G EA + M++ G P +T + ++S CA +
Sbjct: 167 KSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDL 226
Query: 98 ----------------VMVSTALLDMY-------------------------------AK 110
V ++ AL+DMY A+
Sbjct: 227 GRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQ 286
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G +D+A +FD M D W A++ G+V + +EAL F MQ + PD +T++S
Sbjct: 287 SGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSC 346
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ C+ + L +G+W+H Y+ K + NV + L+D+Y++ G I A QVFQ + R
Sbjct: 347 LSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNS 406
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
++W +II G A++G A+ YF+ M DEV+F G L+AC H GL+E+G +YF
Sbjct: 407 LTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQ 466
Query: 289 MKKIYRVSPQIEHHGCI 305
M + +SP+++H+ C+
Sbjct: 467 MSSKFNLSPKLKHYSCM 483
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 51/298 (17%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTR-MRLYGTNPSHITFVTLLSGCADFP--------- 94
T W +I S EA + + R ++ GT P + T+ L CA
Sbjct: 71 TFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEIL 130
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFE 144
+++ VS A++ + G +D A +FD +R W +++NG+V+R +
Sbjct: 131 GHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAY 190
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL ++R M++ G++PD +T+I V++ CA + L +G H Y+ + K V + N LM
Sbjct: 191 EALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALM 250
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG------------------- 245
D+Y + G +E AR++F M +T+VSW +++VG+A +G +
Sbjct: 251 DMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNA 310
Query: 246 ------------EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
EAL FN MQ DEV+ L+ACS G ++ G+ ++K
Sbjct: 311 MIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEK 368
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
V W + I + + EA F M+ NP +T V+ LS C+
Sbjct: 305 VVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHH 364
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
S NV + TAL+DMYAK G++ A VF + G + WTA+++G
Sbjct: 365 YIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHG 424
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-LWMHRYVPKQDFKDNVRVCNTLM 204
A+ YF M + V PD +T + +L+ C + + G + + K + ++ + ++
Sbjct: 425 AIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMV 484
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV 244
D+ R G +E A ++ + M + V W ++ ++G V
Sbjct: 485 DLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNV 525
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 152/280 (54%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
+V W + I+ ++G + L F M +G P T+ ++L CA S
Sbjct: 417 SVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHD 476
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
++ V++ ++DMY K G +D A + D + G W A+L+GF EE
Sbjct: 477 KVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEE 536
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A ++F M G++PD+ T +VL+ CAN+ T+ +G +H + KQ+ D+ + +TL+D
Sbjct: 537 AQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVD 596
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + + VF+++ KR VSWN++I G+A++G EAL F MQK + +
Sbjct: 597 MYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHAT 656
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L ACSH GL +DG +YF +M Y++ PQ+EH C+
Sbjct: 657 FVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACM 696
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 106/249 (42%), Gaps = 19/249 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + +S +C+ G E+ F M G +P TF LL C+
Sbjct: 115 VSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHAL 174
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+V +AL+DMY K +D A F M R W A + G V+ + +
Sbjct: 175 AVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRG 234
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F MQ G+ + S CA + L G +H + K F + V ++DV
Sbjct: 235 LELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDV 294
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ + AR+ F + T+ + N+++VG G EA+ F M + + D VS
Sbjct: 295 YAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSL 354
Query: 267 TGALTACSH 275
+G +AC+
Sbjct: 355 SGVFSACAE 363
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 2/193 (1%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P + + +L Y+ G + A +FD M D W AL++G+ +R F+E+++ F
Sbjct: 79 PRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFV 138
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M GV PD T +L C+ + L +G+ +H K + +VR + L+D+Y +
Sbjct: 139 EMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCR 198
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ A F M +R VSW + I G N LE F MQ+ + S+ A
Sbjct: 199 SLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 258
Query: 272 ACSHAGLIEDGLQ 284
+C+ + G Q
Sbjct: 259 SCAAMSCLNTGRQ 271
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 120/273 (43%), Gaps = 35/273 (12%)
Query: 46 VQWTSSISRHCRSGCI--------LEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--- 94
V W ++I+ GC+ LE +E R+ L + PS + + CA
Sbjct: 216 VSWGAAIA-----GCVQNEQYVRGLELFIEMQRLGLGVSQPS---YASAFRSCAAMSCLN 267
Query: 95 --------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFV 138
S++ +V TA++D+YAK + A F + T A++ G V
Sbjct: 268 TGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLV 327
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ EA+ F+ M S + D +++ V + CA + G +H K F ++
Sbjct: 328 RAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDIC 387
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V N ++D+Y + + A +FQ M ++ VSWN+II NG + + +FN M +
Sbjct: 388 VNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFG 447
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
K D+ ++ L AC+ +E GL D + K
Sbjct: 448 MKPDDFTYGSVLKACAALRSLEYGLMVHDKVIK 480
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
F N V N L+ +Y+R AR+VF M +R VSWN+++ ++ G + A+ F+
Sbjct: 48 FVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFD 107
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSP 297
G+ D VS+ ++ G+ ++ + F M + VSP
Sbjct: 108 ----GMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMAR-RGVSP 147
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 136/217 (62%), Gaps = 7/217 (3%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
D + NVM+ MYAK G ++ A VFD M R WT++++G+ + F++A++
Sbjct: 263 DVATWNVMIGV----MYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKL 318
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
FR MQISGV+ D TI +V++ C + L +G ++H Y + V N+L+D+YS+
Sbjct: 319 FRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSK 378
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTG 268
G I+ A ++F+ + KR SW +I+GFAVNG GEAL+ F M ++G +E++F G
Sbjct: 379 CGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLG 438
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LT+CSH GL+E G +F M K+Y ++P+IEH+GC+
Sbjct: 439 VLTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCM 475
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%)
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
GV P T+ SVL A L G +H +V K F+ + R+ TL+D+Y+R G ++ A
Sbjct: 99 GVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIATTLVDLYARCGRLDDA 158
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
R+VF R+ + +N++I + G V A E F +M
Sbjct: 159 RRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVM 196
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 152/280 (54%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
+V W + I+ ++G + L F M +G P T+ ++L CA S
Sbjct: 417 SVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHD 476
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
++ V++ ++DMY K G +D A + D + G W A+L+GF EE
Sbjct: 477 KVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEE 536
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A ++F M G++PD+ T +VL+ CAN+ T+ +G +H + KQ+ D+ + +TL+D
Sbjct: 537 AQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVD 596
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + + VF+++ KR VSWN++I G+A++G EAL F MQK + +
Sbjct: 597 MYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHAT 656
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L ACSH GL +DG +YF +M Y++ PQ+EH C+
Sbjct: 657 FVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACM 696
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 106/249 (42%), Gaps = 19/249 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + +S +C+ G E+ F M G +P TF LL C+
Sbjct: 115 VSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHAL 174
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+V +AL+DMY K +D A F M R W A + G V+ + +
Sbjct: 175 AVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRG 234
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F MQ G+ + S CA + L G +H + K F + V ++DV
Sbjct: 235 LELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDV 294
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ + AR+ F + T+ + N+++VG G EA+ F M + + D VS
Sbjct: 295 YAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSL 354
Query: 267 TGALTACSH 275
+G +AC+
Sbjct: 355 SGVFSACAE 363
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 2/193 (1%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P + + +L Y+ G + A +FD M D W AL++G+ +R F+E+++ F
Sbjct: 79 PRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFV 138
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M GV PD T +L C+ + L +G+ +H K + +VR + L+D+Y +
Sbjct: 139 EMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCR 198
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ A F M +R VSW + I G N LE F MQ+ + S+ A
Sbjct: 199 SLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 258
Query: 272 ACSHAGLIEDGLQ 284
+C+ + G Q
Sbjct: 259 SCAAMSCLNTGRQ 271
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 120/273 (43%), Gaps = 35/273 (12%)
Query: 46 VQWTSSISRHCRSGCI--------LEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--- 94
V W ++I+ GC+ LE +E R+ L + PS + + CA
Sbjct: 216 VSWGAAIA-----GCVQNEQYVRGLELFIEMQRLGLGVSQPS---YASAFRSCAAMSCLN 267
Query: 95 --------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFV 138
S++ +V TA++D+YAK + A F + T A++ G V
Sbjct: 268 TGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLV 327
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ EA+ F+ M S + D +++ V + CA + G +H K F ++
Sbjct: 328 RAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDIC 387
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V N ++D+Y + + A +FQ M ++ VSWN+II NG + + +FN M +
Sbjct: 388 VNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFG 447
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
K D+ ++ L AC+ +E GL D + K
Sbjct: 448 MKPDDFTYGSVLKACAALRSLEYGLMVHDKVIK 480
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 136/212 (64%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
N + A++ YAK G + A +FD + D W++++ + + +F ++LE FR M
Sbjct: 1105 KNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQM 1164
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q + V+PD + I SVL+ CA++ L +G W+H YV + + K + + N+L+D++++ GC+
Sbjct: 1165 QRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCV 1224
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ A QVF M ++ +SWNSII+G A NGF EAL+ F+ M + +EV+F G L AC
Sbjct: 1225 QEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIAC 1284
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++ L+E+GL +F+ MK ++ + PQ++H+GC+
Sbjct: 1285 ANRQLVEEGLDHFERMKSVHNLEPQMKHYGCV 1316
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 127/217 (58%), Gaps = 3/217 (1%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ P NV+ ++ +A +G ++ A ++FD M R WT L++G+ + + EAL
Sbjct: 539 EMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTL 598
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
R M G+ P +T+++V+ +N+ + +G ++ Y K+ + RV N+L+D+Y++
Sbjct: 599 LRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAK 658
Query: 210 FGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
G ++ + +VF M +R LVSW SII GFA++G EALE F M++ K + ++F
Sbjct: 659 IGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLS 718
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ ACSH GL+E GL +F M Y + P+I+H GCI
Sbjct: 719 VINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCI 755
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 132/298 (44%), Gaps = 50/298 (16%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD--FPSN----- 96
TT W + + +S +A + + + + G P ++TF +L CA P
Sbjct: 904 TTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMH 963
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++ VS +L+ +YA G + A VF+ M D W +L+ G+ + + +
Sbjct: 964 NHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLK 1023
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E L F++MQ V+ D +T++ V++ C ++ + M RY+ + +V + NTL+
Sbjct: 1024 EVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLI 1083
Query: 205 DVYSRFGCIEFARQVFQRMHKRT-------------------------------LVSWNS 233
D Y R G ++ A +VF +M + L+SW+S
Sbjct: 1084 DYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSS 1143
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+I ++ ++LE F MQ+ K D V L+AC+H G ++ G D +++
Sbjct: 1144 MICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRR 1201
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 23/214 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTR-MRLYGTNPSHITFVTLLSGCADFPS--------- 95
V WT I + R+ C+ AL R M G +PS IT + ++ ++
Sbjct: 577 VSWTGLIDGYTRA-CLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNG 635
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFE 144
++ V +L+D+YAK G + + VFD M R WT++++GF
Sbjct: 636 YCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSV 695
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTL 203
EALE F M+ +G++P+ +T +SV+N C++ + GL + V + + ++ +
Sbjct: 696 EALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCI 755
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+D+ R G + A Q+ + + V+ I++G
Sbjct: 756 IDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLG 789
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 5/154 (3%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W A L + + EAL F+ + + D VL CA + G +H V
Sbjct: 448 WRAFLKAYSHGPFPLEALHLFKHAR-QHLADDTFVFTFVLKACAGLGWHRAGAQLHALVV 506
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
++ F+ + V L++VY C+ AR+VF M + +VSWN +I GFA G V E
Sbjct: 507 QKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWGEV----E 562
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
Y L+ + + VS+TG + + A L + L
Sbjct: 563 YARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAL 596
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 160/310 (51%), Gaps = 50/310 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------DF 93
V W+ I +C+SG +A L F M+ Y P + T+LS C DF
Sbjct: 189 VTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDF 248
Query: 94 -PSNNVMVS----TALLDMYAKFGRMDLATVVFDVMRGCDF------------------- 129
NN++V +AL+ MYA G MDLA +F+ M +
Sbjct: 249 IMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENA 308
Query: 130 --------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
W+A+++G+ + D +EAL F MQ G++PD +T++SV+ CA++
Sbjct: 309 RSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHL 368
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
L W+H +V K F + + N L+++Y++ G +E AR++F +M ++ ++SW +I
Sbjct: 369 GALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMI 428
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV 295
FA++G G AL +F+ M+ + + ++F G L ACSHAGL+E+G + F M + +
Sbjct: 429 SAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNI 488
Query: 296 SPQIEHHGCI 305
+P+ H+GC+
Sbjct: 489 TPKHVHYGCM 498
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 115/267 (43%), Gaps = 50/267 (18%)
Query: 66 LEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMY 108
L + RMR G +F LL + S ++ V T L+ MY
Sbjct: 108 LVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMY 167
Query: 109 AKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
A GR+ A ++FD M R W+ +++G+ + F +AL F M+ VEPD + +
Sbjct: 168 AACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLS 227
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDF-------------------------------KD 195
+VL+ C L G +H ++ + +
Sbjct: 228 TVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPK 287
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
N+ ++ YS+ G IE AR VF +M K+ LV W+++I G+A + EAL FN MQ
Sbjct: 288 NLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQ 347
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDG 282
K D+V+ +TAC+H G ++
Sbjct: 348 SLGIKPDQVTMLSVITACAHLGALDQA 374
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 7/192 (3%)
Query: 114 MDLATVVFDVMRGCDFWTALLNGFVKR----DYFEEALEYFRVMQISGVEPDYLTIISVL 169
+D A VF+++ + T L N F++ + E+ L + M+ G+ D + +L
Sbjct: 72 LDYALSVFNLIPKPE--THLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLL 129
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
+ V++L GL +H K F + V L+ +Y+ G I AR +F +M R +V
Sbjct: 130 KALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVV 189
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD-I 288
+W+ +I G+ +G +AL F M+ + DE+ + L+AC AG + G D I
Sbjct: 190 TWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFI 249
Query: 289 MKKIYRVSPQIE 300
M+ V P ++
Sbjct: 250 MENNIVVDPHLQ 261
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 152/280 (54%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
+V W + I+ ++G + L F M +G P T+ ++L CA S
Sbjct: 459 SVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHD 518
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
++ V++ ++DMY K G +D A + D + G W A+L+GF EE
Sbjct: 519 KVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEE 578
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A ++F M G++PD+ T +VL+ CAN+ T+ +G +H + KQ+ D+ + +TL+D
Sbjct: 579 AQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVD 638
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + + VF+++ KR VSWN++I G+A++G EAL F MQK + +
Sbjct: 639 MYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHAT 698
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L ACSH GL +DG +YF +M Y++ PQ+EH C+
Sbjct: 699 FVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACM 738
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 106/249 (42%), Gaps = 19/249 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + +S +C+ G E+ F M G +P TF LL C+
Sbjct: 157 VSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHAL 216
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+V +AL+DMY K +D A F M R W A + G V+ + +
Sbjct: 217 AVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRG 276
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F MQ G+ + S CA + L G +H + K F + V ++DV
Sbjct: 277 LELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDV 336
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ + AR+ F + T+ + N+++VG G EA+ F M + + D VS
Sbjct: 337 YAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSL 396
Query: 267 TGALTACSH 275
+G +AC+
Sbjct: 397 SGVFSACAE 405
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 2/193 (1%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P + + +L Y+ G + A +FD M D W AL++G+ +R F+E+++ F
Sbjct: 121 PRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFV 180
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M GV PD T +L C+ + L +G+ +H K + +VR + L+D+Y +
Sbjct: 181 EMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCR 240
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ A F M +R VSW + I G N LE F MQ+ + S+ A
Sbjct: 241 SLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 300
Query: 272 ACSHAGLIEDGLQ 284
+C+ + G Q
Sbjct: 301 SCAAMSCLNTGRQ 313
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 120/273 (43%), Gaps = 35/273 (12%)
Query: 46 VQWTSSISRHCRSGCI--------LEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--- 94
V W ++I+ GC+ LE +E R+ L + PS + + CA
Sbjct: 258 VSWGAAIA-----GCVQNEQYVRGLELFIEMQRLGLGVSQPS---YASAFRSCAAMSCLN 309
Query: 95 --------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFV 138
S++ +V TA++D+YAK + A F + T A++ G V
Sbjct: 310 TGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLV 369
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ EA+ F+ M S + D +++ V + CA + G +H K F ++
Sbjct: 370 RAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDIC 429
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V N ++D+Y + + A +FQ M ++ VSWN+II NG + + +FN M +
Sbjct: 430 VNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFG 489
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
K D+ ++ L AC+ +E GL D + K
Sbjct: 490 MKPDDFTYGSVLKACAALRSLEYGLMVHDKVIK 522
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 152/313 (48%), Gaps = 50/313 (15%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC------------ 90
DT V W + IS H RS + F M G P+ +T++T+LS C
Sbjct: 86 DTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQV 145
Query: 91 -----ADFPSNNVMVSTALLDMYA-------------------------------KFGRM 114
A ++ V AL+DMYA + G++
Sbjct: 146 HKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQV 205
Query: 115 DLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC 172
D A +FD M R WTA+++G+V+ F EALE FR MQ S V D T++SV+ C
Sbjct: 206 DQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTAC 265
Query: 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
A + L G W Y+ + K + V N L+D+YS+ G I+ A VF+ M+ R +W
Sbjct: 266 AQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWT 325
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
++I+G AVNG EA+ F M + DEV+F G LTAC+HAGL++ G +F M
Sbjct: 326 AVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGS 385
Query: 293 YRVSPQIEHHGCI 305
Y ++P + H GC+
Sbjct: 386 YGIAPNVMHFGCL 398
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 36/222 (16%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDV--MRGCD---FWTALLNGFVKRDYFEEALEYFR 151
N V+++L+ MYA G +A + D RG D W AL++G + F + F
Sbjct: 53 NAHVASSLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFV 112
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M +GV P +T I+VL+ C + + +G+ +H+ V +++V N L+D+Y+
Sbjct: 113 DMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECS 172
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGF--------------------------AVNGFVG 245
++ A ++F+ M R VSW S+I GF ++G+V
Sbjct: 173 EMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQ 232
Query: 246 -----EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
EALE F MQ + DE + +TAC+ G +E G
Sbjct: 233 AGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETG 274
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 147/265 (55%), Gaps = 20/265 (7%)
Query: 60 CILEAALEFTRMRLYGTNPSHITFVTLLSGCADF-----------------PSNNVMVST 102
C EAA F RM G P TFV+LL CA + + V+
Sbjct: 118 CAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAP 177
Query: 103 ALLDMYAKFGRMDLATVVFDVMRG-CDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
L++MYA+ G + A V+FD M G C + A++ V+ EAL FR MQ G++P
Sbjct: 178 TLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKP 237
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
+T+ISVL+ CA + L +G W+H Y+ K V+V L+D+Y++ G +E A VF
Sbjct: 238 TSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVF 297
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
Q M R +W+ ++V +A +G+ EA+ F M+K K D+V+F G L ACSH+G++
Sbjct: 298 QDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVS 357
Query: 281 DGLQYFDIMKKIYRVSPQIEHHGCI 305
+GLQYFD M++ Y + I+H+GC+
Sbjct: 358 EGLQYFDSMRE-YGIVSGIKHYGCV 381
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 20/222 (9%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
+ V + + I+ RS EA + F M+ G P+ +T +++LS CA +
Sbjct: 202 ECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWI 261
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYF 143
+ V V+TAL+DMYAK G ++ A VF M D W+ ++ + Y
Sbjct: 262 HDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYG 321
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EA+ F M+ G++PD +T + VL C++ + GL + + ++ +
Sbjct: 322 REAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCV 381
Query: 204 MDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV 244
D+ +R G +E A + + K T + W +++ A +G V
Sbjct: 382 TDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDV 423
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 156/311 (50%), Gaps = 50/311 (16%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS---------------- 88
V W + I R+CR G + EA F M+ P + ++S
Sbjct: 177 VVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYE 236
Query: 89 ------------------------GCADFPSN--------NVMVSTALLDMYAKFGRMDL 116
GC D N+ VSTA++ Y+K GR+D
Sbjct: 237 FLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDD 296
Query: 117 ATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A V+FD D WT +++ +V+ DY +EAL F M SG++PD +++ SV++ CAN
Sbjct: 297 AQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACAN 356
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ L W+H + + + + N L+++Y++ G ++ R VF++M +R +VSW+S+
Sbjct: 357 LGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSM 416
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I +++G +AL F M++ + +EV+F G L CSH+GL+E+G + F M Y
Sbjct: 417 INALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYN 476
Query: 295 VSPQIEHHGCI 305
++P++EH+GC+
Sbjct: 477 ITPKLEHYGCM 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 33/216 (15%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG 157
V T +DMYA GR++ A VFD M D W ++ + + +EA + F M+ S
Sbjct: 148 VETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSN 207
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
V PD + + ++++ C + ++ ++ + D + + + L+ +Y+ GC++ AR
Sbjct: 208 VMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAR 267
Query: 218 QVFQRM-------------------------------HKRTLVSWNSIIVGFAVNGFVGE 246
+ F++M K+ LV W ++I + + + E
Sbjct: 268 EFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQE 327
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
AL F M K D VS ++AC++ G+++
Sbjct: 328 ALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKA 363
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 152/279 (54%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF------------ 93
V W + +S S F +M L G P+ TF+++L C+
Sbjct: 219 VSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAH 278
Query: 94 -----PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++ V TAL+DMYAK ++ A V FD + D WT +++G+ + D E+A
Sbjct: 279 IIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKA 338
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
++YFR MQ G++P+ T+ S L+ C+++ TL G +H K ++ V + L+D+
Sbjct: 339 VKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDL 398
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + GC+E A +F+ + R +VSWN+II G++ +G +ALE F +M DE +F
Sbjct: 399 YGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATF 458
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L+ACS GL+E+G + FD M KIY ++P IEH+ C+
Sbjct: 459 IGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACM 497
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 117/248 (47%), Gaps = 19/248 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + ++ + + G + F +M+ T S T T+L GCA+ S
Sbjct: 17 VSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHAL 76
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ + +L+DMY+K G + A VF +R D W+A++ G ++ + +EA
Sbjct: 77 ALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEA 136
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
E F +M+ G P+ T+ S+++ N+ L G +H + K F+ + V N L+ +
Sbjct: 137 AELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMM 196
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + C+E +VF+ M LVSWN+++ GF + G F M FK + +F
Sbjct: 197 YMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTF 256
Query: 267 TGALTACS 274
L +CS
Sbjct: 257 ISVLRSCS 264
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 80/153 (52%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W ALLNG+ + ++ L+ F M+ + T+ +VL CAN +L G +H
Sbjct: 19 WNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHALAL 78
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
+ + + + +L+D+YS+ G + A +VF ++ +V+W+++I G G EA E
Sbjct: 79 RSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAE 138
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
F+LM++ + ++ + + ++ ++ G + G
Sbjct: 139 LFHLMRRKGARPNQFTLSSLVSTATNMGDLRYG 171
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%)
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+E A ++F M ++ VSWN+++ G+A G + L+ F M++ K + + + L
Sbjct: 1 MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60
Query: 273 CSHAGLIEDG 282
C++ G + +G
Sbjct: 61 CANTGSLREG 70
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 145/279 (51%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
+ WT I + +SG EA +M G P+ IT+V++L+ CA +
Sbjct: 196 ISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRH 255
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+V V TAL+ MYAK G +D A VVFD M+ D W ++ F + EA
Sbjct: 256 ALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEA 315
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ F MQ G +PD + +S+LN CA+ L +HR+ + +VRV L+ +
Sbjct: 316 YDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHM 375
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
YS+ G I+ AR VF RM R +VSWN++I G A +G +ALE F M K D V+F
Sbjct: 376 YSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTF 435
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSHAGL+++G + M ++Y + P + H C+
Sbjct: 436 VAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCM 474
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 127/270 (47%), Gaps = 26/270 (9%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ W + I+ + +A F M G P+ T++ +L CA +
Sbjct: 93 SGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVH 152
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++V V TALL MY K G ++ A +FD + D WT ++ + + +
Sbjct: 153 ACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGK 212
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA M+ G +P+ +T +S+LN CA+ L +HR+ + +VRV L+
Sbjct: 213 EAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALV 272
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+Y++ G I+ AR VF RM R +VSWN +I FA +G EA + F MQ K D +
Sbjct: 273 QMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAI 332
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
F L AC+ AG +E +KKI+R
Sbjct: 333 MFLSILNACASAGALE-------WVKKIHR 355
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 2/188 (1%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRV 152
N V LL +Y + GR+ A VFD V + W A++ G+V+ + E+A+ FR
Sbjct: 60 EQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFRE 119
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M GV+P+ T + +L CA++ L G +H + + +VRV L+ +Y + G
Sbjct: 120 MCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGS 179
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
I AR++F + ++SW +I +A +G EA M++ FK + +++ L A
Sbjct: 180 INEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNA 239
Query: 273 CSHAGLIE 280
C+ G ++
Sbjct: 240 CASEGALK 247
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 154/277 (55%), Gaps = 19/277 (6%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC---ADFP---------- 94
W S + + +SG E F M +T V++L+ C AD
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVE 252
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
N + T+L+DMYAK G++D A +FD M R W+A+++G+ + EAL+
Sbjct: 253 EKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALD 312
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F MQ + ++P+ +T++S+L+ CA + L G W+H ++ K+ K V + LMD Y+
Sbjct: 313 LFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYA 372
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G +E + +VF +M + ++SW +I G A NG +ALEYF LM + + ++V+F G
Sbjct: 373 KCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIG 432
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSHAGL+++G F M + + + P+IEH+GC+
Sbjct: 433 VLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCM 469
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 130/254 (51%), Gaps = 20/254 (7%)
Query: 63 EAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALL 105
EA L F M P TF +L C+ + ++ V L+
Sbjct: 107 EAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLI 166
Query: 106 DMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
MYA G +++A VFD M R W ++ G+ K +EE ++ F M + D +
Sbjct: 167 HMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEV 226
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T++SVL C + L +G W++RYV ++ K N + +L+D+Y++ G ++ AR++F +M
Sbjct: 227 TLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQM 286
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG- 282
+R +V+W+++I G++ EAL+ F+ MQK +E++ L++C+ G +E G
Sbjct: 287 DRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGK 346
Query: 283 LQYFDIMKKIYRVS 296
+F I KK +++
Sbjct: 347 WVHFFIKKKRMKLT 360
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 6/190 (3%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
+ N++ S A+L + MD A +F + D + ++ GF + EA+ F+
Sbjct: 59 AENLLESAAILLPTS----MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKE 114
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M + V+PD T +L VC+ ++ L G +H + K F + V NTL+ +Y+ G
Sbjct: 115 MHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGE 174
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+E AR+VF M +R + +WNS+ G+ +G E ++ F+ M + + DEV+ LTA
Sbjct: 175 VEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTA 234
Query: 273 CSHAGLIEDG 282
C +E G
Sbjct: 235 CGRLADLELG 244
>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 149/265 (56%), Gaps = 19/265 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS-------GCADFP---- 94
V WT+ IS + + +A + F +M +G +P+ T +++ GC
Sbjct: 118 VTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGF 177
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+NV V +ALLD+Y ++G MD A +VFD + R W AL+ G +R E+A
Sbjct: 178 CVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKA 237
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F+ M G P + + S+ C++ L G W+H Y+ K K NTL+D+
Sbjct: 238 LELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDM 297
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G I AR++F R+ KR +VSWNS++ +A +GF EA+ +F M++G + +E+SF
Sbjct: 298 YAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISF 357
Query: 267 TGALTACSHAGLIEDGLQYFDIMKK 291
LTACSH+GL+++G Y+++MKK
Sbjct: 358 LSVLTACSHSGLLDEGWHYYELMKK 382
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 2/189 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
++++++ LL+MYAK G ++ A VFD M DF WT L++G+ + D +AL F M
Sbjct: 84 HDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQM 143
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
G P+ T+ SV+ A R G +H + K F NV V + L+D+Y+R+G +
Sbjct: 144 LRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLM 203
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ A+ VF + R VSWN++I G A +ALE F M + F+ S+ AC
Sbjct: 204 DDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGAC 263
Query: 274 SHAGLIEDG 282
S G +E G
Sbjct: 264 SSTGFLEQG 272
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 63/108 (58%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
++L C + L G +H ++ + F+ ++ + NTL+++Y++ G +E AR+VF +M +R
Sbjct: 56 TLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPER 115
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
V+W ++I G++ + +AL FN M + F +E + + + A +
Sbjct: 116 DFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAA 163
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 158/285 (55%), Gaps = 21/285 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
I V W + IS + +G EA F M P T V+++S CA S
Sbjct: 197 IKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQ 256
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ + AL+D+Y K G ++ A +F+ + D W L+ G+ +
Sbjct: 257 VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNL 316
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVC 200
++EAL F+ M SG P+ +T++S+L CA++ + IG W+H Y+ K + +
Sbjct: 317 YKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHR 376
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+L+D+Y++ G IE A+QVF + R+L SWN++I GFA++G A + F+ M+K +
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIE 436
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSH+G+++ G F MK+ Y+++P++EH+GC+
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCM 481
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 50/285 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W + H S + A + M G P+ TF LL CA +
Sbjct: 71 WNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVL 130
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYF----- 143
++ V T+L+ MY + GR++ A VFD D +TAL+ G+ + Y
Sbjct: 131 KLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQK 190
Query: 144 --------------------------EEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
+EALE F+ M + V PD T++SV++ CA +
Sbjct: 191 MFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSAS 250
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+ +G +H ++ F N+++ N L+D+Y + G +E A +F+ + + ++SWN++I G
Sbjct: 251 IELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGG 310
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ EAL F M + ++V+ L AC+H G IE G
Sbjct: 311 YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIG 355
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 33/207 (15%)
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + A VF+ ++ + W + G AL + M G+ P+ T +
Sbjct: 50 FDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFL 109
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L CA + G +H +V K + ++ V +L+ +Y + G +E AR+VF + R +
Sbjct: 110 LKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDV 169
Query: 229 VSWNSIIVGFAVNGFVG-------------------------------EALEYFNLMQKG 257
VS+ ++I G+A G++ EALE F M K
Sbjct: 170 VSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKT 229
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ DE + ++AC+ + IE G Q
Sbjct: 230 NVRPDESTMVSVVSACAQSASIELGRQ 256
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 157/284 (55%), Gaps = 20/284 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLY-GTNPSHITFVTLLSGCADFPSN---- 96
+ V W++ I + S C+ EA F +M L +P+ +T ++L CA
Sbjct: 273 VRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGR 332
Query: 97 -------------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
++++ LL MYAK G +D A FD M D ++A+++G V+
Sbjct: 333 KLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNG 392
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
AL FR+MQ+SG++PD T++ VL C+++ L G H Y+ + F + +CN
Sbjct: 393 NAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICN 452
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+D+YS+ G I FAR+VF RM + +VSWN++I+G+ ++G EAL F+ + K
Sbjct: 453 ALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKP 512
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F L++CSH+GL+ +G +FD M + + + P++EH C+
Sbjct: 513 DDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICM 556
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 134/297 (45%), Gaps = 29/297 (9%)
Query: 7 ATILRQPFLPHQQNRNQN-LKKRPQISIQTNN---SKSTID-----TTVQWTSSISRHCR 57
A + Q FL + N + + L K ++ + N ++ D + + W I +
Sbjct: 27 AKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAW 86
Query: 58 SGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMV 100
+G A + M G P+ T+ +L C+ + ++V V
Sbjct: 87 NGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFV 146
Query: 101 STALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGV 158
TAL+D YAK G + A +F M D W A++ G ++A++ MQ G+
Sbjct: 147 CTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGI 206
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
P+ TI+ VL + LG G +H Y ++ F + V V L+D+Y++ C+ +AR+
Sbjct: 207 CPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARK 266
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVSFTGALTACS 274
+F M R VSW+++I G+ + + EALE F+ ++ K V+ L AC+
Sbjct: 267 IFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACA 323
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 73/154 (47%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
W ++ + F+ A++ + M GV P+ T VL C+ + + G+ +H +
Sbjct: 76 LWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHA 135
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
+ +V VC L+D Y++ G + A+++F M R +V+WN++I G ++ G +A+
Sbjct: 136 KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAV 195
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ MQ+ + + G L A + G
Sbjct: 196 QLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 57/119 (47%)
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
+ +L C ++L +H++ K + V + L +Y + AR++F +
Sbjct: 12 LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+++ WN II +A NG A++ ++ M + ++ ++ L ACS IEDG++
Sbjct: 72 PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 137/211 (64%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
N++ A++ YAK + A +FD + D W+++++G+ + ++F +ALE FR MQ
Sbjct: 718 NIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQ 777
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ V+PD + I SV++ CA++ L +G W+H YV + + K + + N+L+D+Y + G +
Sbjct: 778 RAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAK 837
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A QVF+ M ++ +SWNSII+G A NGF E+L F M F+ + V+F G L AC+
Sbjct: 838 EALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACA 897
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+A L+E+GL +F+ MK++Y + PQ++H+GC+
Sbjct: 898 NAKLVEEGLDHFESMKRLYSLEPQMKHYGCV 928
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 132/233 (56%), Gaps = 11/233 (4%)
Query: 84 VTLLSGC--------ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTAL 133
V +L GC + P N + ++ +A +G ++ A ++F+ M R W+ +
Sbjct: 133 VYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGM 192
Query: 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193
++G+ + EA+ FR M G+ P +T+++V+ +NV + IG +H Y K+
Sbjct: 193 IDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGL 252
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
+VRV N+L+D+Y++ G I+ + +VF M +R LVSW SII GFA++G +A+E F
Sbjct: 253 VWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFA 312
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
M++ + + ++F L ACSH GL+E G+ +F M Y ++P ++H GCI
Sbjct: 313 DMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCI 365
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 131/289 (45%), Gaps = 50/289 (17%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN------ 97
TT W I +S +A + + + G P ++TF +L CA + N
Sbjct: 516 TTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMH 575
Query: 98 -----------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ VS +L+ +YA G + A VFD M D W +L+ G+ + + F+
Sbjct: 576 NHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFK 635
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+ L F++MQ GV+ D +T+I V++ C + + +M RY+ + +V + NTL+
Sbjct: 636 DILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLV 695
Query: 205 DVYSRFGCIE-------------------------------FARQVFQRMHKRTLVSWNS 233
D + R G ++ AR++F ++ K+ L+SW+S
Sbjct: 696 DYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSS 755
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+I G++ +ALE F MQ+ K D + +++C+H G ++ G
Sbjct: 756 MISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG 804
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 94/198 (47%), Gaps = 21/198 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-------- 96
V W+ I + R+ +EA F RM G +PS IT + ++ ++
Sbjct: 186 VVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHG 245
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFE 144
+V V +L+D+YAK G + + VFD M R WT++++GF
Sbjct: 246 YCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSV 305
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTL 203
+A+E F M+ +G+ P+ +T +SVL+ C++ + G+ + + + + +V+ +
Sbjct: 306 KAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCI 365
Query: 204 MDVYSRFGCIEFARQVFQ 221
+D+ R G + A Q+ +
Sbjct: 366 IDMLGRAGRLREAEQIIR 383
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 7/161 (4%)
Query: 116 LATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
+A VFD R W ALL + + ++AL+ FR + + Y + L CA +
Sbjct: 46 IAHQVFD--RRPTPWHALLKAYSHGPHPQDALQLFRHARWHAADDTYAFTFA-LKACAGL 102
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
+ +H V ++ F+ V L++VY GC+ +R F+ M + VSWN +I
Sbjct: 103 GWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVI 162
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
GFA G V EY L+ + + + VS++G + + A
Sbjct: 163 TGFAGWGEV----EYARLLFERMPCRNVVSWSGMIDGYTRA 199
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 117/295 (39%), Gaps = 50/295 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC----------ADFPS 95
V WTS IS G ++A F MR G P+ ITF+++L C A F S
Sbjct: 289 VSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKS 348
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVV---FDVMRGCDFWTALLNGFVKRDYFE 144
+V ++DM + GR+ A + F V W LL K Y E
Sbjct: 349 MIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSK--YGE 406
Query: 145 EALEYFRVMQISGVEPDYLTIISVL-NVCANVRTLGIGLWMHRYVPKQD----FKDNVRV 199
+ + +I +E ++ VL N+ +R + + V +++ F + VR+
Sbjct: 407 VEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVKSFFNIVRM 466
Query: 200 -----------------CNTLMD-VYSRFGCIE----FARQVFQRMHKRTLVSWNSIIVG 237
C+ M V + ++ FA +VF ++ T WN +I G
Sbjct: 467 EAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRG 526
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
A + +A+ ++ Q G D ++F L AC+ + +G Q + + K+
Sbjct: 527 LAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKL 581
>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
Length = 608
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 153/280 (54%), Gaps = 18/280 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPS----- 95
T+ W S I+ + G EA F RM G P+ IT T+ S CA D +
Sbjct: 181 TSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWAR 240
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N++V TAL++MY K +D A FD M+ D W+ ++ G+ + E
Sbjct: 241 SLIAEQDLQNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHE 300
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+LE F M+ + +P+ +T++ VL+ CA + + +G + +V Q+ + + L+D
Sbjct: 301 SLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALID 360
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + AR VF RM + +++WNS++ G A+NGF +A+ + M + + +E++
Sbjct: 361 MYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEIT 420
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F LTAC+HAGL++ G+ +F MK I+ VSPQ+EH CI
Sbjct: 421 FVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACI 460
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 34/222 (15%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM------------------------------- 124
++ V TAL+D YAK G MD A VFD M
Sbjct: 118 GDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGM 177
Query: 125 --RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182
R W +++ + ++EAL FR M G P+ +TI ++ ++CA L G
Sbjct: 178 VRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGK 237
Query: 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG 242
W + +QD + N+ V LM++Y + I+ AR+ F RM +R +V+W+++I G+A NG
Sbjct: 238 WARSLIAEQDLQ-NMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNG 296
Query: 243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
E+LE F M+ K +EV+ G L+AC+ G E G Q
Sbjct: 297 RPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQ 338
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 4/157 (2%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
L++ + +E L+ F + G + + V+ CA + G +H + +
Sbjct: 56 LISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRG 115
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
++ V L+D Y++ G ++ A +VF M + + N +I G++ +G V +A F+
Sbjct: 116 LLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFD 175
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
G+ + S+ + +H G ++ L+ F M
Sbjct: 176 ----GMVRRTSASWNSMIACYAHGGEYQEALRLFRRM 208
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 152/281 (54%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T V W S I + +SG A L F +M G P+++T + L CAD
Sbjct: 196 TVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVH 255
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++V V +L+ MY+K R+D+A +F +R W A++ G+ +
Sbjct: 256 KLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVN 315
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL F MQ ++PD T++SV+ A + W+H V ++ NV V L+
Sbjct: 316 EALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALV 375
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G I AR++F M+ R +++WN++I G+ +G ++E F M+KG K +++
Sbjct: 376 DMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDI 435
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F AL+ACSH+GL+E+GL +F+ MKK Y + P ++H+G +
Sbjct: 436 TFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAM 476
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 119/241 (49%), Gaps = 20/241 (8%)
Query: 62 LEAALEF-TRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTA 103
L++AL F +RM+ P F LL C D S N+ T
Sbjct: 11 LDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTG 70
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
+++MYAK +++ A +FD M D W +++G+ + + + AL M G PD
Sbjct: 71 VVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPD 130
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
+TI+S+L A+ R L IG+ +H YV + F+ V V L+D+YS+ G + AR +F
Sbjct: 131 SITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFD 190
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
M RT+VSWNS+I G+ +G A+ F M + V+ GAL AC+ G +E
Sbjct: 191 GMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLER 250
Query: 282 G 282
G
Sbjct: 251 G 251
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 70/151 (46%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
+L G+ K + AL +F M+ V P +L +C + L G +H V
Sbjct: 1 MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
F N+ ++++Y++ I A +F RM +R LV WN++I G+A NGF AL
Sbjct: 61 FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
M + + D ++ L A + L+ G+
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGM 151
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 158/285 (55%), Gaps = 21/285 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
I V W + IS + +G EA F M P T V+++S CA S
Sbjct: 182 IKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQ 241
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ + AL+D+Y K G ++ A +F+ + D W L+ G+ +
Sbjct: 242 VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNL 301
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVC 200
++EAL F+ M SG P+ +T++S+L CA++ + IG W+H Y+ K + +
Sbjct: 302 YKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHR 361
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+L+D+Y++ G IE A+QVF + R+L SWN++I GFA++G A + F+ M+K +
Sbjct: 362 TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIE 421
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSH+G+++ G F MK+ Y+++P++EH+GC+
Sbjct: 422 PDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCM 466
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 50/285 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W + H S + A + M G P+ TF LL CA +
Sbjct: 56 WNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVL 115
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYF----- 143
++ V T+L+ MY + GR++ A VFD D +TAL+ G+ + Y
Sbjct: 116 KLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQK 175
Query: 144 --------------------------EEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
+EALE F+ M + V PD T++SV++ CA +
Sbjct: 176 MFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSAS 235
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+ +G +H ++ F N+++ N L+D+Y + G +E A +F+ + + ++SWN++I G
Sbjct: 236 IELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGG 295
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ EAL F M + ++V+ L AC+H G IE G
Sbjct: 296 YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIG 340
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 33/207 (15%)
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + A VF+ ++ + W + G AL + M G+ P+ T +
Sbjct: 35 FDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFL 94
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L CA + G +H +V K + ++ V +L+ +Y + G +E AR+VF + R +
Sbjct: 95 LKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDV 154
Query: 229 VSWNSIIVGFAVNGFVG-------------------------------EALEYFNLMQKG 257
VS+ ++I G+A G++ EALE F M K
Sbjct: 155 VSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKT 214
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ DE + ++AC+ + IE G Q
Sbjct: 215 NVRPDESTMVSVVSACAQSASIELGRQ 241
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 155/285 (54%), Gaps = 19/285 (6%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---- 95
S+ ++ W++ I+ + +SG +A F+ M L G PS TFV +++ C+D +
Sbjct: 270 SSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEG 329
Query: 96 -------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKR 140
+ + V TAL+DMYAK + A FD ++ D WT+++ G+V+
Sbjct: 330 KQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQN 389
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
E+AL + M++ G+ P+ LT+ SVL C+++ L G +H K F V +
Sbjct: 390 GENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIG 449
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+ L +Y++ GC++ VF+RM R ++SWN++I G + NG EALE F MQ K
Sbjct: 450 SALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTK 509
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D V+F L+ACSH GL+E G YF +M + + P++EH+ C+
Sbjct: 510 PDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACM 554
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 117/269 (43%), Gaps = 23/269 (8%)
Query: 46 VQWTSSI---SRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF--------- 93
V W I S+H SG L F RMR T P+ TF + + +
Sbjct: 72 VSWNCIINGYSQHGPSGSSHVMEL-FQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLA 130
Query: 94 --------PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
+V V ++L++MY K G A VFD M R W +++G+ +
Sbjct: 131 HAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLA 190
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EAL FR+M+ + SVL+ + G +H K V V N L
Sbjct: 191 AEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNAL 250
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+ +Y++ G ++ A Q F+ + ++W+++I G+A +G +AL+ F+ M + E
Sbjct: 251 VTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSE 310
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKI 292
+F G + ACS G +G Q D + K+
Sbjct: 311 FTFVGVINACSDLGAAWEGKQVHDYLLKL 339
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 4/221 (1%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGC 127
FT + Y N S L + S+ V ++ +L+++YAK R+ A VF+ ++
Sbjct: 10 FTALLQYTHNRSLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFERIQNK 69
Query: 128 DF--WTALLNGFVKR--DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
D W ++NG+ + +E F+ M+ P+ T V + + G
Sbjct: 70 DVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRL 129
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
H K D +V V ++LM++Y + G AR+VF M +R VSW ++I G+A
Sbjct: 130 AHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKL 189
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
EAL F LM++ +E FT L+A + L+ +G Q
Sbjct: 190 AAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQ 230
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 149/281 (53%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC---ADFPSN---- 96
V WT+ IS + G EA F R+ P T V +LS C D S
Sbjct: 177 NVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIH 236
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
NV V T+L+DMYAK G M+ A VFD M D W A++ G+ +
Sbjct: 237 KCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPK 296
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA++ F MQ V+PD T++ VL+ CA + L +G W+ V + +F N + L+
Sbjct: 297 EAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALI 356
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G + A +VF+ M ++ V WN+II G A+NG+V + F ++K K D
Sbjct: 357 DLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGN 416
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L C+HAGL+++G +YF+ M + + ++P IEH+GC+
Sbjct: 417 TFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCM 457
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 131/254 (51%), Gaps = 19/254 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W + I + C +A + MR G P++ TF +L CA
Sbjct: 80 WNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVV 139
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
+V V T+L+ +YAK G ++ A VFD + + WTA+++G++ F EA++
Sbjct: 140 KGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAID 199
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
FR + + PD TI+ VL+ C + L G W+H+ + + NV V +L+D+Y+
Sbjct: 200 MFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYA 259
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G +E AR VF M ++ +VSW ++I G+A+NG EA++ F MQ+ K D + G
Sbjct: 260 KCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVG 319
Query: 269 ALTACSHAGLIEDG 282
L+AC+ G +E G
Sbjct: 320 VLSACARLGALELG 333
Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N ++ F + R +F ++ + + WN++I G N +A+E++ LM+ F
Sbjct: 50 NMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFL 109
Query: 261 TDEVSFTGALTACS 274
+ +F L AC+
Sbjct: 110 PNNFTFPFVLKACA 123
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 157/285 (55%), Gaps = 21/285 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + IS + + EA + M P T VT++S CA +
Sbjct: 167 VKDIVSWNAMISGYVETFNYKEALELYKEMVKTNVKPDESTMVTVVSACAQSSNIELGRQ 226
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ V AL+DMY+K G M+ A +F + D W L+ G +
Sbjct: 227 VHSLIEDHGFGSNLKVVNALMDMYSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNL 286
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVC 200
++EAL F+ M SG P+ +T++SVL+ CA++ + IG W+H Y+ K + ++ +
Sbjct: 287 YKEALFLFQEMLRSGESPNDVTMLSVLSACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLR 346
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+L+D+Y++ G IE A QVF M R+L SWN++I GFA++G A + F+ M+K +
Sbjct: 347 TSLIDMYAKCGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIE 406
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSH+G+++ G F M + Y+++P++EH+GC+
Sbjct: 407 PDDITFVGLLSACSHSGMLDLGRHIFSSMTQDYKITPKLEHYGCM 451
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 133/272 (48%), Gaps = 25/272 (9%)
Query: 13 PFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMR 72
PFL +++ ++ QI +D V TS IS + ++G + +A F R
Sbjct: 77 PFLLKSCAKSKAFREGQQIHGHVVKLGYDLDMYVH-TSLISMYAQNGRLEDAHKVFDR-- 133
Query: 73 LYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--W 130
SH +V+ TAL+ YA G A +FD + D W
Sbjct: 134 -----SSH---------------RHVVSYTALITGYASRGYTKSARKLFDEILVKDIVSW 173
Query: 131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
A+++G+V+ ++EALE ++ M + V+PD T+++V++ CA + +G +H +
Sbjct: 174 NAMISGYVETFNYKEALELYKEMVKTNVKPDESTMVTVVSACAQSSNIELGRQVHSLIED 233
Query: 191 QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 250
F N++V N LMD+YS+ G +E A ++FQ + + +SWN++I G EAL
Sbjct: 234 HGFGSNLKVVNALMDMYSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFL 293
Query: 251 FNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
F M + ++V+ L+AC+H G I+ G
Sbjct: 294 FQEMLRSGESPNDVTMLSVLSACAHLGAIDIG 325
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 43/226 (19%)
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + A VF+ + + W + G AL+ + M G+ P+ + +
Sbjct: 20 FDGLPYAISVFETIEEPNLLIWNTMFRGHALNSDSVSALKLYVCMISLGLLPNSYSFPFL 79
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L CA + G +H +V K + ++ V +L+ +Y++ G +E A +VF R R +
Sbjct: 80 LKSCAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKVFDRSSHRHV 139
Query: 229 VSWNSIIVGFAVNGFV-------------------------------GEALEYFNLMQKG 257
VS+ ++I G+A G+ EALE + M K
Sbjct: 140 VSYTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMVKT 199
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303
K DE + ++AC+ + IE G Q V IE HG
Sbjct: 200 NVKPDESTMVTVVSACAQSSNIELGRQ----------VHSLIEDHG 235
>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
Length = 608
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 153/280 (54%), Gaps = 18/280 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPS----- 95
T+ W S I+ + G EA F RM G P+ IT T+ S CA D +
Sbjct: 181 TSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWAR 240
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N++V TAL++MY K +D A FD M+ D W+ ++ G+ + E
Sbjct: 241 SLIAEQDLQNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHE 300
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+LE F M+ + +P+ +T++ VL+ CA + + +G + +V Q+ + + L+D
Sbjct: 301 SLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALID 360
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + AR VF RM + +++WNS++ G A+NGF +A+ + M + + +E++
Sbjct: 361 MYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEIT 420
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F LTAC+HAGL++ G+ +F MK I+ VSPQ+EH CI
Sbjct: 421 FVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACI 460
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 34/222 (15%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM------------------------------- 124
++ V TAL+D YAK G MD A VFD M
Sbjct: 118 GDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGM 177
Query: 125 --RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182
R W +++ + ++EAL FR M G P+ +TI ++ ++CA L G
Sbjct: 178 VRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGK 237
Query: 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG 242
W + +QD + N+ V LM++Y + I+ AR+ F RM +R +V+W+++I G+A NG
Sbjct: 238 WARSLIAEQDLQ-NMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNG 296
Query: 243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
E+LE F M+ K +EV+ G L+AC+ G E G Q
Sbjct: 297 RPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQ 338
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 4/157 (2%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
L++ + +E L+ F + G + + V+ CA + G +H + +
Sbjct: 56 LISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRG 115
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
++ V L+D Y++ G ++ A +VF M + + N +I G++ +G V +A F+
Sbjct: 116 LLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFD 175
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
G+ + S+ + +H G ++ L+ F M
Sbjct: 176 ----GMVRRTSASWNSMIACYAHGGEYQEALRLFRRM 208
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 124/208 (59%), Gaps = 2/208 (0%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISG 157
V +L+ MY+ G + A VF++M D W +++NGF EAL +R M G
Sbjct: 173 VQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEG 232
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
VEPD T++S+L+ C + L +G +H Y+ K N N L+D+YS+ G A+
Sbjct: 233 VEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQ 292
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+VF M +R++VSW S+IVG AVNG EAL+ F +++ K E++F G L ACSH G
Sbjct: 293 KVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCG 352
Query: 278 LIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++++G YF MK+ Y + P+IEHHGC+
Sbjct: 353 MLDEGFNYFRRMKEEYGILPRIEHHGCM 380
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 95/208 (45%), Gaps = 6/208 (2%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P N + AL+ + A M A +F+ ++ + W ++ GF + + A+E F
Sbjct: 68 PDFNKHLIFALVSLSAP---MSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFS 124
Query: 152 VMQI-SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M S + PD T + A + + +G +H V + F V N+L+ +YS
Sbjct: 125 QMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVL 184
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + A QVF+ M R V+WNS+I GFA+NG EAL + M + D + L
Sbjct: 185 GSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLL 244
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQ 298
+AC G + G + M K+ V Q
Sbjct: 245 SACVELGALALGERVHMYMVKVGLVQNQ 272
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 88/218 (40%), Gaps = 21/218 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I+ +G EA + M G P T V+LLS C + +
Sbjct: 203 VAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMY 262
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N S ALLD+Y+K G A VFD M R WT+L+ G EA
Sbjct: 263 MVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEA 322
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMD 205
L+ F ++ G++P +T + VL C++ L G + R + + ++D
Sbjct: 323 LKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVD 382
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
+ R G + A + M V W +++ ++G
Sbjct: 383 LLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHG 420
>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 755
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 153/286 (53%), Gaps = 19/286 (6%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN- 97
+S+ V WT+ IS ++G +A F +M +G PS T ++++ CA S N
Sbjct: 320 RSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNL 379
Query: 98 ----------------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
V +L+ MYAK G +D +++VFD+M D W A++ G+ +
Sbjct: 380 GTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQ 439
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
Y EAL F M+ PD +TI+S+L CA+ L +G W+H +V + + + V
Sbjct: 440 NGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILV 499
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
+L+D+Y + G ++ A++ F +M LVSW++IIVG+ +G AL +++ +
Sbjct: 500 DTSLVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGM 559
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
K + V F L++CSH GL+E GL ++ M K + ++P +EHH C+
Sbjct: 560 KPNHVIFLSVLSSCSHNGLVEQGLNIYESMTKDFGIAPDLEHHACV 605
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 120/248 (48%), Gaps = 16/248 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WT+ I + R+G + EA F MR G PS +T ++LL G ++
Sbjct: 128 VPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSELAHVQCLHGCAIL 187
Query: 96 ----NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
+++ +S ++L++Y K G ++ + +FD M D W +L++ + + E L
Sbjct: 188 YGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLL 247
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
+ M++ G E T SVL+V A+ L +G +H + + F + V +L+ VY +
Sbjct: 248 LKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLK 307
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G I+ A ++F+R + +V W ++I G NG +AL F M K K +
Sbjct: 308 GGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASV 367
Query: 270 LTACSHAG 277
+TAC+ G
Sbjct: 368 ITACAQLG 375
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 116/258 (44%), Gaps = 22/258 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
TT ++I+ H G + + M TF +LL C+
Sbjct: 25 TTNSVNATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLH 84
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
S + ++++L++ YAKFG D+A VFD M R WT ++ + +
Sbjct: 85 QRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVP 144
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA F M+ G++P +T++S+L V L +H F ++ + N+++
Sbjct: 145 EAFSLFDEMRRQGIQPSSVTVLSLL---FGVSELAHVQCLHGCAILYGFMSDINLSNSML 201
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+VY + G IE++R++F M R LVSWNS+I +A G + E L M+ F+
Sbjct: 202 NVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQ 261
Query: 265 SFTGALTACSHAGLIEDG 282
+F L+ + G ++ G
Sbjct: 262 TFGSVLSVAASRGELKLG 279
>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
[Vitis vinifera]
gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 148/277 (53%), Gaps = 19/277 (6%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF-------------- 93
W + + R+G EA L + M + F L C+D
Sbjct: 146 WVAMGIGYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVL 205
Query: 94 ---PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
+ +V+ ALL +Y++ G D A VFD M R W +L+ G VK+D EA+E
Sbjct: 206 KATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIE 265
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
FR+MQ G+ ++T+ ++L VCA V LG G +H + K K + V N+L+D+Y+
Sbjct: 266 AFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYA 325
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G +++ R+VF M + L SWN++I G+A+NG + EA+E F M F D ++F
Sbjct: 326 KCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIA 385
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ CSHAGL +DG + F++MK Y +SP +EH+ C+
Sbjct: 386 LLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHYACL 422
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 98/221 (44%), Gaps = 23/221 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I+ + + EA F M+ G S +T T+L CA +
Sbjct: 245 VSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAV 304
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ V +L+DMYAK G MD VF+ M+G D W L+ G+ EA
Sbjct: 305 IVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEA 364
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF--KDNVRVCNTLM 204
+E F+ M SG PD +T I++L+ C++ G + + K D+ V L+
Sbjct: 365 MESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMM-KMDYGISPTVEHYACLV 423
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV 244
DV R G I+ A ++ + M K T W S++ ++G V
Sbjct: 424 DVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNV 464
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 136/216 (62%), Gaps = 2/216 (0%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEY 149
+ P + + + ++ YAK G +D A + FD D W A+++G+V+ F+E L
Sbjct: 165 EMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYL 224
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
FR++Q++ V PD +S+L+ CA++ L IG+W+HRY+ ++ ++R+ +L+D+Y++
Sbjct: 225 FRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLSIRLSTSLLDMYAK 284
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G +E A+++F M +R +V WN++I G A++G AL+ F+ M+K K D+++F
Sbjct: 285 CGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKPDDITFIAV 344
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
TACS++G+ +GLQ D M +Y + P+ EH+GC+
Sbjct: 345 FTACSYSGMAHEGLQLLDKMSSLYEIEPKSEHYGCL 380
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------- 94
W + IS + ++ C E F ++L P FV++LS CA
Sbjct: 205 WGAMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLN 264
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
S ++ +ST+LLDMYAK G ++LA +FD M D W A+++G AL+
Sbjct: 265 RKTVSLSIRLSTSLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALK 324
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMDVY 207
F M+ +G++PD +T I+V C+ GL + + + + L+D+
Sbjct: 325 MFSEMEKTGIKPDDITFIAVFTACSYSGMAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLL 384
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWN 232
SR G A + +R+ T SWN
Sbjct: 385 SRAGLFGEAMVMIRRI---TSTSWN 406
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 31/182 (17%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
++ F+ F F M +G+ PD TI VL CA +R +G +H Y K
Sbjct: 76 IIKTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLG 135
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA------------- 239
++ V N+LM +YS G + AR VF M + + VSW+ +I G+A
Sbjct: 136 LVFDIFVGNSLMAMYSVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFD 195
Query: 240 -------------VNGFV-----GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
++G+V E L F L+Q DE F L+AC+H G ++
Sbjct: 196 EAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDI 255
Query: 282 GL 283
G+
Sbjct: 256 GI 257
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 134/216 (62%), Gaps = 2/216 (0%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEY 149
+ PS NV+ T ++ YA G ++ A +F+ +R WTA++NG+V+ + F+EA+
Sbjct: 298 EMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVAL 357
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
FR MQI V+PD ++S+L CA + G W+H ++ + + V L+++Y++
Sbjct: 358 FREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAK 417
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G IE A ++F + + SW SII G A+NG +ALE F+ M++ + D+++F G
Sbjct: 418 CGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGV 477
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH GL+E+G ++F+ M+ Y++ P++EH+GC+
Sbjct: 478 LSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCL 513
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 110/224 (49%), Gaps = 43/224 (19%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF-RVM 153
+ V +L+DMYA+ D+ ++FD M D W +++G+VK FE+A+ F R+
Sbjct: 171 DTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQ 230
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR----VCNTLMDVYSR 209
+ SG+ PD T++S L+ C ++ L +G +H YV +DNV+ + N L+D+Y +
Sbjct: 231 EESGLMPDEATVVSTLSACTALKRLELGKKIHHYV-----RDNVKFTPIIGNALLDMYCK 285
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFA--------------------------VNGF 243
GC+ AR VF+ M + ++ W +++ G+A +NG+
Sbjct: 286 CGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGY 345
Query: 244 V-----GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
V EA+ F MQ K D+ LT C+ G IE G
Sbjct: 346 VQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQG 389
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 20/204 (9%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------- 91
S I V WT+ I+ + + EA F M++ P V+LL+GCA
Sbjct: 330 SPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQG 389
Query: 92 ----DFPSNN-----VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKR 140
+F N +V TAL++MYAK G ++ A +F +R D WT+++ G
Sbjct: 390 KWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMN 449
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-LWMHRYVPKQDFKDNVRV 199
+ALE F M+ +GV PD +T I VL+ C++ + G + + + K V
Sbjct: 450 GKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEH 509
Query: 200 CNTLMDVYSRFGCIEFARQVFQRM 223
L+D+ R G + A ++ +++
Sbjct: 510 YGCLVDLLGRAGLLNEAEELIKKI 533
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 3/191 (1%)
Query: 112 GRMDLATVVFDVMR-GCDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
G ++ A +F +R C + ++ F K+ ++ L F ++ G+ PD T V
Sbjct: 85 GNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVF 144
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
+ + + V K + + V N+L+D+Y++ + + +F M R ++
Sbjct: 145 KAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVI 204
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
SWN +I G+ +A+ F MQ + DE + L+AC+ +E G +
Sbjct: 205 SWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHY 264
Query: 289 MKKIYRVSPQI 299
++ + +P I
Sbjct: 265 VRDNVKFTPII 275
>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 1131
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 152/267 (56%), Gaps = 23/267 (8%)
Query: 62 LEAALE-FTRMRLYGTNPSHITFVTLLSGCAD------------------FPSNNVMVST 102
LE A+ F +++ G P+ +TF LL GC F S++ MV
Sbjct: 592 LEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCV 651
Query: 103 ALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
+LL MY R + +F + +G WTAL++G+ ++++ E+AL++++ M+ +
Sbjct: 652 SLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNIL 711
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD T SVL CA + +L G +H + F + C++L+D+Y++ G ++ + QV
Sbjct: 712 PDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQV 771
Query: 220 FQRMHKR-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
F M +R +++SWNS+IVG A NG+ EALE F M++ DEV+F G L+ACSHAG
Sbjct: 772 FHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGR 831
Query: 279 IEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ +G + FD+M Y++ P+++H GC+
Sbjct: 832 VSEGRKVFDLMVNNYKLQPRVDHLGCM 858
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 128/268 (47%), Gaps = 19/268 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
V W IS H + G EA F ++ G + + ++LS A
Sbjct: 273 NVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVH 332
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+NV V +AL++MYAK +MD A VF+ + R W A+L GF + +
Sbjct: 333 AQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQ 392
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E +E+F M+ G +PD T S+ + CA++ L G +H + K F N+ V N L+
Sbjct: 393 EVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALV 452
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G ++ AR+ F+ M VSWN+IIVG+ + EA F M DEV
Sbjct: 453 DMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEV 512
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKI 292
S ++AC++ + G Q ++ K+
Sbjct: 513 SLASIVSACANVKEFKQGQQCHCLLVKV 540
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 135/265 (50%), Gaps = 21/265 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-----DFP------ 94
V W + + ++G E F+ M+ +G P TF ++ S CA DF
Sbjct: 376 VLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTV 435
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
++N+ V+ AL+DMYAK G + A F+ M+ D W A++ G+V+ +Y +EA
Sbjct: 436 MIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEA 495
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
FR M +GV PD +++ S+++ CANV+ G H + K + ++L+D+
Sbjct: 496 FFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDM 555
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G + AR VF M R +VS N++I G+ ++ + EA+ F +Q K EV+F
Sbjct: 556 YVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMS-HLEEAIHLFQEIQMVGLKPTEVTF 614
Query: 267 TGALTACSHAGLIEDGLQ-YFDIMK 290
G L C A ++ G Q + +MK
Sbjct: 615 AGLLDGCDGAFMLNLGRQIHGQVMK 639
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 129/249 (51%), Gaps = 20/249 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
TV WT+ I+ + R G +EA F +M+ G P I VT +
Sbjct: 208 TVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVT------------------V 249
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
++ Y GR+ A +F + + W +++G KR + EEA+ +F ++ +G++
Sbjct: 250 INAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATR 309
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
++ SVL+ A++ L G +H K+ DNV V + L+++Y++ ++ A+QVF
Sbjct: 310 SSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNS 369
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ +R +V WN+++ GFA NG E +E+F+ M++ + DE +FT +AC+ ++ G
Sbjct: 370 LGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFG 429
Query: 283 LQYFDIMKK 291
Q +M K
Sbjct: 430 GQLHTVMIK 438
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 102/266 (38%), Gaps = 65/266 (24%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV--------- 98
W S +S + G F M +G P+ TF +LS C+ N
Sbjct: 110 WNSVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVF 169
Query: 99 --------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
L+DMYAK + A +VFD D WT L+ G+V+ + EA++
Sbjct: 170 KMGFGFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVK 229
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F MQ G PD + +++V+N Y
Sbjct: 230 VFDKMQRVGHVPDQIALVTVIN-----------------------------------AYV 254
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
G + AR++F ++ +V+WN +I G A GF EA+ +F ++K K S
Sbjct: 255 ALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGS 314
Query: 269 ALTACS-----------HAGLIEDGL 283
L+A + HA I++GL
Sbjct: 315 VLSAIASLSMLNYGSMVHAQAIKEGL 340
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 2/190 (1%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQIS 156
++ ++D+Y K G +D A F + D W ++L+ ++ F ++ F M
Sbjct: 77 LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNH 136
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
GV P+ T VL+ C+ ++ + G +H V K F L+D+Y++ + A
Sbjct: 137 GVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDA 196
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
R VF VSW ++I G+ +GF EA++ F+ MQ+ D+++ + A
Sbjct: 197 RLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVAL 256
Query: 277 GLIEDGLQYF 286
G + D + F
Sbjct: 257 GRLADARKLF 266
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 92/212 (43%), Gaps = 22/212 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WT+ IS + + +A + MR P TF ++L CA S
Sbjct: 680 VVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSL 739
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEE 145
+ + ++L+DMYAK G + + VF M W +++ G K Y EE
Sbjct: 740 IFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEE 799
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY-VPKQDFKDNVRVCNTLM 204
ALE F+ M+ + PD +T + VL+ C++ + G + V + V ++
Sbjct: 800 ALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMVNNYKLQPRVDHLGCMV 859
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
D+ R+G + A + ++ K + W++++
Sbjct: 860 DILGRWGFLNEAEEFINKLGCKADPMLWSTLL 891
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N ++D+Y + G ++FA++ F R+ K+ + +WNS++ + +G ++ F M +
Sbjct: 80 NVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHGVR 139
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
+E +F L+ACS GLQ + K+++
Sbjct: 140 PNEFTFAMVLSACS-------GLQDINYGKQVH 165
>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 143/281 (50%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
+TV WT+ I+ + +G + EA G P T V +L+ CA
Sbjct: 183 STVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVW 242
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ +V V+TA +D+Y K G M A VFD MR D W A++ G+ +
Sbjct: 243 RAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPR 302
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL+ F MQ GV PD + L+ C + L +G R V +F DN + L+
Sbjct: 303 EALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALI 362
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G A VFQ+M K+ ++ WN++I+G + G A M+K K ++
Sbjct: 363 DMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDN 422
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L +C+H GLI+DG +YF M K+Y +SP+IEH+GCI
Sbjct: 423 TFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCI 463
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 66 LEFTRMRLYGTNPSHITFVTLLSGCADFPS------------------NNVMVSTALLDM 107
L R+ NPSH+TF L + P N V T+LL +
Sbjct: 103 LHALRLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTL 162
Query: 108 YAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
YA+ G + A VFD M WTAL+ ++ EA+ R +G+ PD T
Sbjct: 163 YARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTA 222
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
+ VL CA V L G + R ++ +V V +D+Y + G + AR+VF +M
Sbjct: 223 VRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRD 282
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ V+W +++ G+A NG EAL+ F MQ + D + GAL+AC+ G ++ G Q
Sbjct: 283 KDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQ 341
>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 868
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 151/280 (53%), Gaps = 16/280 (5%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV--- 98
+ V WT+ IS ++ EA F+ M+ G P+ T+ +L+ + V
Sbjct: 359 VGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQ 418
Query: 99 ----------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
V TALLD Y K G+++ A VF + D W+A+L G+ + E A
Sbjct: 419 VVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAA 478
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVR-TLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
++ F + G++P+ T S+LNVCA ++G G H + K ++ V + L+
Sbjct: 479 IKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLT 538
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G IE A +VF+R ++ LVSWNS+I G+A +G +AL+ F M+K K D V+
Sbjct: 539 MYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVT 598
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G AC+HAGL+E+G +YFDIM + +++P EH+ C+
Sbjct: 599 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCM 638
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 2/182 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++V V T+L+D Y K VFD M R WT L++G+ + +E L F M
Sbjct: 126 DDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRM 185
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q G +P+ T + L V A G GL +H V K + V N+L+++Y + G +
Sbjct: 186 QNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNV 245
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
AR +F + +++V+WNS+I G+A NG EAL F M+ + E SF + C
Sbjct: 246 RKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLC 305
Query: 274 SH 275
++
Sbjct: 306 AN 307
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 126/268 (47%), Gaps = 48/268 (17%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------ 92
K+ + + V W S IS + +G LEA F MRL S +F +++ CA+
Sbjct: 254 KTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRF 313
Query: 93 --------------FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR-----GC----DF 129
F N + TAL+ Y+K T + D +R GC
Sbjct: 314 TEQLHCSVVKYGFLFDQN---IRTALMVAYSK------CTAMLDALRLFKEIGCVGNVVS 364
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPD---YLTIISVLNVCANVRTLGIGLWMHR 186
WTA+++GF++ D EEA++ F M+ GV P+ Y I++ L V + +H
Sbjct: 365 WTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE-------VHA 417
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
V K +++ + V L+D Y + G +E A +VF + + +V+W++++ G+A G
Sbjct: 418 QVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEA 477
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACS 274
A++ F + KG K +E +F+ L C+
Sbjct: 478 AIKMFGELTKGGIKPNEFTFSSILNVCA 505
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 20/247 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WT+ IS + R+ E F RM+ GT P+ TF L A+
Sbjct: 160 VTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTV 219
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDV--MRGCDFWTALLNGFVKRDYFEEA 146
+ VS +L+++Y K G + A ++FD ++ W ++++G+ EA
Sbjct: 220 VVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEA 279
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F M+++ V + SV+ +CAN++ L +H V K F + + LM
Sbjct: 280 LGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVA 339
Query: 207 YSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
YS+ + A ++F+ + +VSW ++I GF N EA++ F+ M++ + +E +
Sbjct: 340 YSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFT 399
Query: 266 FTGALTA 272
++ LTA
Sbjct: 400 YSVILTA 406
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 2/174 (1%)
Query: 120 VFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
+FD G D + +LL GF + +EA F + G+E D SVL V A +
Sbjct: 49 LFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCD 108
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
G +H K F D+V V +L+D Y + + R+VF M +R +V+W ++I G
Sbjct: 109 ELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISG 168
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+A N E L F MQ + + +F AL + G+ GLQ ++ K
Sbjct: 169 YARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVK 222
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 157/284 (55%), Gaps = 20/284 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLY-GTNPSHITFVTLLSGCADFPSN---- 96
+ V W++ I + S C+ EA F +M L +P+ +T ++L CA
Sbjct: 273 VRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGR 332
Query: 97 -------------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
++++ LL MYAK G +D A FD M D ++A+++G V+
Sbjct: 333 KLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNG 392
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
AL FR+MQ+SG++PD T++ VL C+++ L G H Y+ + F + +CN
Sbjct: 393 NAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICN 452
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+D+YS+ G I FAR+VF RM + +VSWN++I+G+ ++G EAL F+ + K
Sbjct: 453 ALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKP 512
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F L++CSH+GL+ +G +FD M + + + P++EH C+
Sbjct: 513 DDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICM 556
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 134/297 (45%), Gaps = 29/297 (9%)
Query: 7 ATILRQPFLPHQQNRNQN-LKKRPQISIQTNN---SKSTID-----TTVQWTSSISRHCR 57
A + Q FL + N + + L K ++ + N ++ D + + W I +
Sbjct: 27 AKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAW 86
Query: 58 SGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMV 100
+G A + M G P+ T+ +L C+ + ++V V
Sbjct: 87 NGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFV 146
Query: 101 STALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGV 158
TAL+D YAK G + A +F M D W A++ G ++A++ MQ G+
Sbjct: 147 CTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGI 206
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
P+ TI+ VL + LG G +H Y ++ F + V V L+D+Y++ C+ +AR+
Sbjct: 207 CPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARK 266
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVSFTGALTACS 274
+F M R VSW+++I G+ + + EALE F+ ++ K V+ L AC+
Sbjct: 267 IFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACA 323
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 73/154 (47%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
W ++ + F+ A++ + M GV P+ T VL C+ + + G+ +H +
Sbjct: 76 LWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHA 135
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
+ +V VC L+D Y++ G + A+++F M R +V+WN++I G ++ G +A+
Sbjct: 136 KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAV 195
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ MQ+ + + G L A + G
Sbjct: 196 QLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 57/119 (47%)
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
+ +L C ++L +H++ K + V + L +Y + AR++F +
Sbjct: 12 LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+++ WN II +A NG A++ ++ M + ++ ++ L ACS IEDG++
Sbjct: 72 PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 157/281 (55%), Gaps = 20/281 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------ 92
TV W + I+ + +G +A F++M +T + L CA
Sbjct: 161 TVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHA 220
Query: 93 -FPSN----NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+N N + ++L+ MYAK G+++ A +FD M R WT++++G+ + +E
Sbjct: 221 LLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKE 280
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A++ FR MQI+GV+ D TI +V++ C + L +G ++H Y ++ V N+L+D
Sbjct: 281 AIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLID 340
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEV 264
+YS+ G I+ A +F M KR SW II+GFA NG GEAL+ F M ++G +E+
Sbjct: 341 MYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQMEEEGGVMPNEI 400
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G LT+CSH GL+E G ++F M IY ++P+IEH+GC+
Sbjct: 401 TFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCM 441
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D ++ + L+ A + ++ +G +H K + V NTL+++YS AR V
Sbjct: 92 DNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVL 151
Query: 221 QRMHKRT--LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
K VSWN+II G+ G +AL+ F+ M KG D+V+ AL AC+ +
Sbjct: 152 DSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCM 211
Query: 279 IEDG 282
++ G
Sbjct: 212 MKVG 215
>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
Length = 645
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 143/281 (50%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
+TV WT+ I+ + +G + EA G P T V +L+ CA
Sbjct: 136 STVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVW 195
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ +V V+TA +D+Y K G M A VFD MR D W A++ G+ +
Sbjct: 196 RAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPR 255
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL+ F MQ GV PD + L+ C + L +G R V +F DN + L+
Sbjct: 256 EALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALI 315
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G A VFQ+M K+ ++ WN++I+G + G A M+K K ++
Sbjct: 316 DMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDN 375
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L +C+H GLI+DG +YF M K+Y +SP+IEH+GCI
Sbjct: 376 TFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCI 416
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 66 LEFTRMRLYGTNPSHITFVTLLSGCADFPS------------------NNVMVSTALLDM 107
L R+ NPSH+TF L + P N V T+LL +
Sbjct: 56 LHALRLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTL 115
Query: 108 YAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
YA+ G + A VFD M WTAL+ ++ EA+ R +G+ PD T
Sbjct: 116 YARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTA 175
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
+ VL CA V L G + R ++ +V V +D+Y + G + AR+VF +M
Sbjct: 176 VRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRD 235
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ V+W +++ G+A NG EAL+ F MQ + D + GAL+AC+ G ++ G Q
Sbjct: 236 KDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQ 294
>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
Length = 705
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 156/318 (49%), Gaps = 58/318 (18%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN-------- 97
V WTS +S H R G + E + F +MR+ G P+ +LS CAD + N
Sbjct: 241 VTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGY 300
Query: 98 ---------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF------------------- 129
+ AL+ +Y K G + A +F M+ +
Sbjct: 301 MVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKA 360
Query: 130 ----------------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
W+A++ GF + EE+LE FR MQ++ V+ + +TI S
Sbjct: 361 LELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIAS 420
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
VL++CA + L +G MH +V + DNV V N L+++Y++ G + VF+++ R
Sbjct: 421 VLSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENRD 480
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
+SWNS+I G+ +G +AL FN M K ++ D V+F AL+ACSHAGL+ +G F
Sbjct: 481 SISWNSMIAGYGTHGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFS 540
Query: 288 IMKKIYRVSPQIEHHGCI 305
M++ +++ P+IEH+ C+
Sbjct: 541 QMRQNFKIEPEIEHYACM 558
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 131/301 (43%), Gaps = 58/301 (19%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W S I + G +EA + +MR YG TF LL ++ +
Sbjct: 107 WNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVV 166
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVMR------------GCDF--------- 129
N++ V L+ MYAK RMD A VFD MR G +
Sbjct: 167 QFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYNYDVNGASR 226
Query: 130 ----------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173
WT+LL+ + + EE + F M++ GV P + VL+VCA
Sbjct: 227 MFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCA 286
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
++ TL G +H Y+ K F D + N L+ +Y + G + A ++F M + LVSWN+
Sbjct: 287 DLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNA 346
Query: 234 IIVGFAVNGFVGEALEYFNLMQK----GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
+I FA +G +ALE + ++K K + ++++ + + GL E+ L+ F M
Sbjct: 347 LISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKM 406
Query: 290 K 290
+
Sbjct: 407 Q 407
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 107/209 (51%), Gaps = 6/209 (2%)
Query: 97 NVMVSTALLDMYAKFG-----RMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFR 151
+ VS L+ +Y+++G R + F+ W +++ V Y EAL+ +
Sbjct: 69 SAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYG 128
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M+ GV D T +L +N+ + +H +V + F++++ V N L+ +Y++
Sbjct: 129 KMRNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLE 188
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ AR+VF +M +++VSWN+++ G+A N V A F+ M+ + + V++T L+
Sbjct: 189 RMDDARKVFDKMRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLS 248
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSPQIE 300
+ + G +E+ + F M ++ V P E
Sbjct: 249 SHARCGHLEETMVLFCKM-RMKGVGPTAE 276
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 153/280 (54%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V WT+ I+ R+G +EA F MR G +T V++L A
Sbjct: 170 VSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGF 229
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+V V +AL+DMY+K G D A VF+ M R W AL+ G+V+ + ++E
Sbjct: 230 YVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKE 289
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL+ F+ M I G+EP+ T+ S L CA + +L G W+H YV + N ++ L+D
Sbjct: 290 ALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVD 349
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ GC++ A VF+++ + + W ++I G A+ G +L F+ M + + + V+
Sbjct: 350 MYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVT 409
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L+AC+H GL+++GL+ F +M YR+ P ++H+GC+
Sbjct: 410 FLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCM 449
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 115/234 (49%), Gaps = 19/234 (8%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSNN----------------VMVSTALLDMYAKF 111
++R+R +G P TF LL + + N V +L+ +A
Sbjct: 92 YSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHC 151
Query: 112 GRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
G +D + +F D WTAL+NG ++ EALE F M+ SGVE D +TI+SVL
Sbjct: 152 GYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVL 211
Query: 170 NVCANVRTLGIGLWMHR-YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
A +R + G W+H YV +V V + L+D+YS+ G + A +VF M R L
Sbjct: 212 CAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNL 271
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
VSW ++I G+ EAL+ F M + ++ + T ALTAC+ G ++ G
Sbjct: 272 VSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQG 325
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
W ++ GF + L + ++ GV PD T +L + +R + ++
Sbjct: 71 LWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNEN-PFQFYAHI 129
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K + V N+L+ ++ G ++ +R++F K+ +VSW ++I G NG EAL
Sbjct: 130 VKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEAL 189
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACS 274
E F M+ + DEV+ L A +
Sbjct: 190 ECFVEMRSSGVEVDEVTIVSVLCAAA 215
>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 148/265 (55%), Gaps = 19/265 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS-------GCADFP---- 94
V WT+ IS + + +A L F +M +G +P+ T +++ GC
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGF 186
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+NV V +ALLD+Y ++G MD A +VFD + R W AL+ G +R E+A
Sbjct: 187 CVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKA 246
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F+ M G P + + S+ C++ L G W+H Y+ K K NTL+D+
Sbjct: 247 LELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDM 306
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G I AR++F R+ KR +VSWNS++ +A +GF EA+ +F M++ + +E+SF
Sbjct: 307 YAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISF 366
Query: 267 TGALTACSHAGLIEDGLQYFDIMKK 291
LTACSH+GL+++G Y+++MKK
Sbjct: 367 LSVLTACSHSGLLDEGWHYYELMKK 391
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 2/189 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+++++ LL+MYAK G ++ A VF+ M DF WT L++G+ + D +AL +F M
Sbjct: 93 HDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQM 152
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
G P+ T+ SV+ A R G +H + K F NV V + L+D+Y+R+G +
Sbjct: 153 LRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLM 212
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ A+ VF + R VSWN++I G A +ALE F M + F+ S+ AC
Sbjct: 213 DDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGAC 272
Query: 274 SHAGLIEDG 282
S G +E G
Sbjct: 273 SSTGFLEQG 281
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 65/108 (60%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
++L C + L G +H ++ + F+ ++ + NTL+++Y++ G +E AR+VF++M +R
Sbjct: 65 TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
V+W ++I G++ + +AL +FN M + + +E + + + A +
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 129/206 (62%), Gaps = 2/206 (0%)
Query: 102 TALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
++ + + G+M A +FD M R WTA+++G+ + + +AL+ FR MQI+G+E
Sbjct: 165 NGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIE 224
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD +IISVL CA + L G W+H + + +CN L+++Y++ GCI+ A Q+
Sbjct: 225 PDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQL 284
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F +M R ++SW+++I G A +G V EA+ F M++ K + ++F G L+AC+HAG
Sbjct: 285 FDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFW 344
Query: 280 EDGLQYFDIMKKIYRVSPQIEHHGCI 305
E+GL YFD MKK + + P+IEH+G +
Sbjct: 345 EEGLMYFDTMKKDFHIEPEIEHYGSL 370
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 22/201 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD----------- 92
T V WT+ IS + R G ++A F M++ G P + +++L CA
Sbjct: 191 TIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIH 250
Query: 93 -FPSNNVM-----VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
F + N + + AL++MY K G +D A +FD MRG D W+ ++ G
Sbjct: 251 MFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVR 310
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF--KDNVRVCNT 202
EA+ F M+ + ++P+ +T + +L+ CA+ GL M+ K+DF + + +
Sbjct: 311 EAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGL-MYFDTMKKDFHIEPEIEHYGS 369
Query: 203 LMDVYSRFGCIEFARQVFQRM 223
L+D+ R G + A + ++M
Sbjct: 370 LVDLLGRAGRLSQALDIVEKM 390
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 141 DYFEEALEYFRVMQISG--VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
D++++ L +R Q S + PD T V+ CA + +G +H K K ++
Sbjct: 72 DFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLI 131
Query: 199 VCNTLMDVYS-------------------------------RFGCIEFARQVFQRMHKRT 227
N L+D+Y+ R G + AR +F M RT
Sbjct: 132 TENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRT 191
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+VSW +II G+ G +AL+ F MQ + DE S L AC+ G +E G
Sbjct: 192 IVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETG 246
>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial; Flags: Precursor
gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
Length = 633
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 148/265 (55%), Gaps = 19/265 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS-------GCADFP---- 94
V WT+ IS + + +A L F +M +G +P+ T +++ GC
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGF 186
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+NV V +ALLD+Y ++G MD A +VFD + R W AL+ G +R E+A
Sbjct: 187 CVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKA 246
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F+ M G P + + S+ C++ L G W+H Y+ K K NTL+D+
Sbjct: 247 LELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDM 306
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G I AR++F R+ KR +VSWNS++ +A +GF EA+ +F M++ + +E+SF
Sbjct: 307 YAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISF 366
Query: 267 TGALTACSHAGLIEDGLQYFDIMKK 291
LTACSH+GL+++G Y+++MKK
Sbjct: 367 LSVLTACSHSGLLDEGWHYYELMKK 391
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 2/189 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+++++ LL+MYAK G ++ A VF+ M DF WT L++G+ + D +AL +F M
Sbjct: 93 HDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQM 152
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
G P+ T+ SV+ A R G +H + K F NV V + L+D+Y+R+G +
Sbjct: 153 LRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLM 212
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ A+ VF + R VSWN++I G A +ALE F M + F+ S+ AC
Sbjct: 213 DDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGAC 272
Query: 274 SHAGLIEDG 282
S G +E G
Sbjct: 273 SSTGFLEQG 281
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 65/108 (60%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
++L C + L G +H ++ + F+ ++ + NTL+++Y++ G +E AR+VF++M +R
Sbjct: 65 TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
V+W ++I G++ + +AL +FN M + + +E + + + A +
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172
>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 876
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 156/280 (55%), Gaps = 16/280 (5%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS-GCADFPS----- 95
+ + V WT+ IS + ++G +A F+ MR G P+H T+ T+L+ A F S
Sbjct: 368 VQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAE 427
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ V TALLD + K G + A VF+++ D W+A+L G+ + EEA
Sbjct: 428 VIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEA 487
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVC-ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+ F + G++P+ T S++N C A ++ G H Y K + + V ++L+
Sbjct: 488 AKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVT 547
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G IE A ++F+R +R LVSWNS+I G+A +G +ALE F MQK + D ++
Sbjct: 548 LYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAIT 607
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G ++AC+HAGL+ G YF+IM + ++P +EH+ C+
Sbjct: 608 FIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCM 647
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 115/249 (46%), Gaps = 21/249 (8%)
Query: 54 RHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV--------------- 98
R+ R EA F + G +P T +LS CA + V
Sbjct: 76 RYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVH 135
Query: 99 --MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
V +L+DMY K G + VFD M D W +LL G+ + ++ E F +MQ
Sbjct: 136 HLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQ 195
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ G PDY T+ +V+ AN + IG+ +H V K F+ VCN+L+ + S+ G +
Sbjct: 196 VEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLR 255
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
AR VF M + VSWNS+I G +NG EA E FN MQ K +F + +C
Sbjct: 256 DARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSC- 314
Query: 275 HAGLIEDGL 283
A L E GL
Sbjct: 315 -ASLKELGL 322
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 129/262 (49%), Gaps = 25/262 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
+V W S I+ H +G LEA F M+L G P+H TF +++ CA
Sbjct: 269 SVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHC 328
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD---FWTALLNGFVKRDYFE 144
S N V TAL+ K +D A +F +M G WTA+++G+++ +
Sbjct: 329 KTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTD 388
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+A+ F +M+ GV+P++ T ++L V V I H V K +++ + V L+
Sbjct: 389 QAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEI----HAEVIKTNYEKSSSVGTALL 444
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D + + G I A +VF+ + + +++W++++ G+A G EA + F+ + + K +E
Sbjct: 445 DAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEF 504
Query: 265 SFTGALTACSH-AGLIEDGLQY 285
+F + AC+ +E G Q+
Sbjct: 505 TFCSIINACTAPTASVEQGKQF 526
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 23/252 (9%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSNNV-----------------MVSTALLDMYAK 110
F M++ G P + T T+++ A+ + + +V +L+ M +K
Sbjct: 191 FCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSK 250
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G + A VVFD M D W +++ G V EA E F MQ++G +P + T SV
Sbjct: 251 SGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASV 310
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-RT 227
+ CA+++ LG+ +H K N V LM ++ I+ A +F MH ++
Sbjct: 311 IKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQS 370
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
+VSW ++I G+ NG +A+ F+LM++ K + +++ LT HA I + + +
Sbjct: 371 VVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV-QHAVFISE--IHAE 427
Query: 288 IMKKIYRVSPQI 299
++K Y S +
Sbjct: 428 VIKTNYEKSSSV 439
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 86/160 (53%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
LL + + D +EAL F + SG+ PD T+ VL+VCA +G +H K
Sbjct: 73 LLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCG 132
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
++ V N+L+D+Y++ G + R+VF M R +VSWNS++ G++ N F + E F
Sbjct: 133 LVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFC 192
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
LMQ ++ D + + + A ++ G + G+Q ++ K+
Sbjct: 193 LMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKL 232
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 132/215 (61%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P +++ TA++ YAK+G +D A V+FD + D W +++G+ + E L F
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R M + V P+ +T+++VL+ C L G W+H Y+ NVRV +L+D+YS+
Sbjct: 61 RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G +E AR VF+R+ + +V+WNS++VG+A++GF +AL F M ++ +++F G L
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSHAGL+ +G ++F MK Y + P++EH+GC+
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCM 215
>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 154/285 (54%), Gaps = 19/285 (6%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---- 95
S+ ++ W++ I+ +SG +A F+ M L G PS TFV +++ C+D +
Sbjct: 270 SSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEG 329
Query: 96 -------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKR 140
+ + V TAL+DMYAK + A FD ++ D WT+++ G+V+
Sbjct: 330 KQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQN 389
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
E+AL + M++ G+ P+ LT+ SVL C+++ L G +H K F V +
Sbjct: 390 GENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIG 449
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+ L +Y++ GC++ VF+RM R ++SWN++I G + NG EALE F MQ K
Sbjct: 450 SALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTK 509
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D V+F L+ACSH GL+E G YF +M + + P++EH+ C+
Sbjct: 510 PDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACM 554
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 116/269 (43%), Gaps = 23/269 (8%)
Query: 46 VQWTSSI---SRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF--------- 93
V W I S+H SG L F RMR T P+ TF + + +
Sbjct: 72 VSWNCIINGYSQHGPSGSSHVMEL-FQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLA 130
Query: 94 --------PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
+V V ++L++MY K G A VFD M R W +++G+ +
Sbjct: 131 HAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLA 190
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EAL FR+M+ + SVL+ + G +H K V V N L
Sbjct: 191 AEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNAL 250
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+ +Y++ G ++ A Q F+ + ++W+++I G A +G +AL+ F+ M + E
Sbjct: 251 VTMYAKCGSLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSE 310
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKI 292
+F G + ACS G +G Q D + K+
Sbjct: 311 FTFVGVINACSDLGAAWEGKQVHDYLLKL 339
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 4/221 (1%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGC 127
FT + Y N S L + S+ V ++ +L+++YAK R+ A VF+ ++
Sbjct: 10 FTALLQYTHNRSLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFERIQNK 69
Query: 128 DF--WTALLNGFVKR--DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
D W ++NG+ + +E F+ M+ P+ T V + + G
Sbjct: 70 DVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRL 129
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
H K D +V V ++LM++Y + G AR+VF M +R VSW ++I G+A
Sbjct: 130 AHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKL 189
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
EAL F LM++ +E FT L+A + L+ +G Q
Sbjct: 190 AAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQ 230
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 156/285 (54%), Gaps = 19/285 (6%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---- 95
S ++ W++ I+ + +SG +A F+RM G NPS T V +L+ C+D +
Sbjct: 273 SNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEG 332
Query: 96 -------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKR 140
+ + + TAL+DMYAK G + A F+ ++ D WT+++ G+V+
Sbjct: 333 KQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQN 392
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
E+AL + MQ+ G+ P+ LT+ SVL C+N+ G +H K V +
Sbjct: 393 GENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIG 452
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+ L +Y++ G +E VF+RM +R ++SWN++I G + NG+ EALE F M++ K
Sbjct: 453 SALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTK 512
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+V+F L+ACSH GL++ G YF +M + + P++EH+ C+
Sbjct: 513 PDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACM 557
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 102/194 (52%), Gaps = 4/194 (2%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA--LEYF 150
S+ + ++ +L++ YAK + A +VFD + D W L+NG+ ++ + +E F
Sbjct: 40 SSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELF 99
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+ M+ + P+ T + +N+ ++ G H K +V V ++L+++Y +
Sbjct: 100 QRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKA 159
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + AR+VF RM +R V+W ++I G+A+ GEA E F LM++ +E +FT L
Sbjct: 160 GLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVL 219
Query: 271 TACSHAGLIEDGLQ 284
+A + ++ G Q
Sbjct: 220 SALAVPEFVDSGKQ 233
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 113/244 (46%), Gaps = 19/244 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAK 110
F RMR P+ TF + + ++ S +V V ++LL+MY K
Sbjct: 99 FQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCK 158
Query: 111 FGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G + A VFD M R W +++G+ + EA E F +M+ + + SV
Sbjct: 159 AGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSV 218
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ A + G +H K + + N L+ +Y++ G ++ + QVF+ + +
Sbjct: 219 LSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNS 278
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
++W+++I G+A +G +AL+ F+ M E + G L ACS A +E+G Q +
Sbjct: 279 ITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNY 338
Query: 289 MKKI 292
+ K+
Sbjct: 339 LLKL 342
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 157/284 (55%), Gaps = 23/284 (8%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
+ V WT IS + R+G EA F +M + P+ TFV++L C
Sbjct: 168 VRDVVSWTGLISGYVRTGLFDEAINLFLKMDVV---PNVATFVSVLVACGRMGYLSMGKG 224
Query: 95 ----------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
++V AL+DMY K + A +FD + D WT++++G V+
Sbjct: 225 VHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQ 284
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+++LE F MQISGVEPD + + SVL+ CA++ L G W+ Y+ +Q + ++ +
Sbjct: 285 PKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTA 344
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+Y++ GCIE A +F + R + +WN+++ G A++G EAL++F LM + +
Sbjct: 345 LVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPN 404
Query: 263 EVSFTGALTACSHAGLIEDGLQYF-DIMKKIYRVSPQIEHHGCI 305
EV+F LTAC H+GL+ +G YF ++ + + SP++EH+GC+
Sbjct: 405 EVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCM 448
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L Y R++ +G PD T VL C + G +H K F ++ V N+L+
Sbjct: 91 LVYGRIVG-NGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHF 149
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
YS G A +VF M R +VSW +I G+ G EA+ NL K + +F
Sbjct: 150 YSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAI---NLFLKMDVVPNVATF 206
Query: 267 TGALTACSHAGLIEDG 282
L AC G + G
Sbjct: 207 VSVLVACGRMGYLSMG 222
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 153/280 (54%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V WT+ I+ R+G +EA F MR G +T V++L A
Sbjct: 170 VSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGF 229
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+V V +AL+DMY+K G D A VF+ M R W AL+ G+V+ + ++E
Sbjct: 230 YVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKE 289
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL+ F+ M I G+EP+ T+ S L CA + +L G W+H YV + N ++ L+D
Sbjct: 290 ALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVD 349
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ GC++ A VF+++ + + W ++I G A+ G +L F+ M + + + V+
Sbjct: 350 MYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVT 409
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L+AC+H GL+++GL+ F +M YR+ P ++H+GC+
Sbjct: 410 FLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCM 449
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 116/236 (49%), Gaps = 19/236 (8%)
Query: 66 LEFTRMRLYGTNPSHITFVTLLSGCADFPSNN----------------VMVSTALLDMYA 109
+ ++R+R +G P TF LL + + N V +L+ +A
Sbjct: 90 VAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQFYAHIVKFGLDFDAFVQNSLVSAFA 149
Query: 110 KFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
G +D + +F D WTAL+NG ++ EALE F M+ SGVE D +T++S
Sbjct: 150 HCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVS 209
Query: 168 VLNVCANVRTLGIGLWMHR-YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
VL A +R + G W+H YV +V V + L+D+YS+ G + A +VF M R
Sbjct: 210 VLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTR 269
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
LVSW ++I G+ EAL+ F M + ++ + T ALTAC+ G ++ G
Sbjct: 270 NLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQG 325
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 1/146 (0%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
W ++ F + L + ++ GV PD T +L + +R + ++
Sbjct: 71 LWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNEN-PFQFYAHI 129
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K + V N+L+ ++ G ++ +R++F K+ +VSW ++I G NG EAL
Sbjct: 130 VKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEAL 189
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACS 274
E F M+ + DEV+ L A +
Sbjct: 190 ECFVEMRSSGVEVDEVTVVSVLCAAA 215
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 153/276 (55%), Gaps = 20/276 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG---------------- 89
V WT+ I+ ++ +A L F +M G P+H T +LL
Sbjct: 155 VTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAF 214
Query: 90 CADFP-SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
C + ++V V +AL+DMYA+ G MD A + FD M + W AL++G ++ E A
Sbjct: 215 CLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHA 274
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L MQ +P + T SVL+ CA++ L G W+H ++ K K + NTL+D+
Sbjct: 275 LHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDM 334
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G I+ A++VF R+ K +VSWN+++ G A +G E L+ F M + + +E+SF
Sbjct: 335 YAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISF 394
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
LTACSH+GL+++GL YF++MKK Y+V P + H+
Sbjct: 395 LCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHY 429
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 2/192 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
F N++++ +++MYAK G +D A +FD M D WTAL+ GF + + +AL F
Sbjct: 118 FLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLF 177
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M G +P++ T+ S+L + L G +H + K ++ +V V + L+D+Y+R
Sbjct: 178 PQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARC 237
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G ++ A+ F M ++ VSWN++I G A G AL MQ+ F+ +++ L
Sbjct: 238 GHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVL 297
Query: 271 TACSHAGLIEDG 282
+AC+ G +E G
Sbjct: 298 SACASIGALEQG 309
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 93/212 (43%), Gaps = 20/212 (9%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN------ 97
+ V W + IS H R G A +M+ P+H T+ ++LS CA +
Sbjct: 254 SEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVH 313
Query: 98 -----------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ LLDMYAK G +D A VFD + D W +L G + +
Sbjct: 314 AHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGK 373
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E L+ F M G+EP+ ++ + VL C++ L GL+ + K + +V T +
Sbjct: 374 ETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFV 433
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
D+ R G ++ A + + M + T W +++
Sbjct: 434 DLLGRVGLLDRAERFIREMPIEPTAAVWGALL 465
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC-NTLMDVYSRF 210
++Q + PDY +L C + + G +H ++ F DN V N ++++Y++
Sbjct: 77 LIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKC 136
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
GC++ AR++F M + +V+W ++I GF+ N +AL F M + F+ + + + L
Sbjct: 137 GCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLL 196
Query: 271 TACSHAGLIEDGLQ 284
A ++ G Q
Sbjct: 197 KASGSEHGLDPGTQ 210
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 135/215 (62%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
PS +++VSTA+L YAK G + A +FD M D W+A+++G+ + EAL+ F
Sbjct: 278 LPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLF 337
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
MQ + PD +T++SV++ CANV L W+H Y K F + + N L+D+Y++
Sbjct: 338 NEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKC 397
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + AR+VF+ M ++ ++SW+S+I FA++G A+ F+ M++ + + V+F G L
Sbjct: 398 GNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVL 457
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSHAGL+E+G ++F M +R+SPQ EH+GC+
Sbjct: 458 YACSHAGLVEEGQKFFSSMINEHRISPQREHYGCM 492
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 106/213 (49%), Gaps = 33/213 (15%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG 157
+ +AL+ MYA GR+ A +FD M D W +++G+ + +++ L+ + M+ SG
Sbjct: 153 IQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSG 212
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
EPD + + +VL+ CA+ L G +H+++ F+ + +L+++Y+ G + AR
Sbjct: 213 TEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAR 272
Query: 218 QV-------------------------------FQRMHKRTLVSWNSIIVGFAVNGFVGE 246
+V F RM ++ LV W+++I G+A + E
Sbjct: 273 EVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLE 332
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
AL+ FN MQ+ D+++ ++AC++ G +
Sbjct: 333 ALQLFNEMQRRRIVPDQITMLSVISACANVGAL 365
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 33/217 (15%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W++ IS + S LEA F M+ P IT ++++S CA+ +
Sbjct: 315 VCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTY 374
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+ ++ AL+DMYAK G + A VF+ M + W++++N F + A
Sbjct: 375 ADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSA 434
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-------LWMHRYVPKQDFKDNVRV 199
+ F M+ +EP+ +T I VL C++ + G + HR P+++
Sbjct: 435 IALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHY----- 489
Query: 200 CNTLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSII 235
++D+Y R + A ++ + M ++ W S++
Sbjct: 490 -GCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLM 525
>gi|115477230|ref|NP_001062211.1| Os08g0511000 [Oryza sativa Japonica Group]
gi|42407533|dbj|BAD10739.1| selenium binding protein-like protein [Oryza sativa Japonica Group]
gi|113624180|dbj|BAF24125.1| Os08g0511000 [Oryza sativa Japonica Group]
gi|215741604|dbj|BAG98099.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 512
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 147/282 (52%), Gaps = 22/282 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSN------ 96
V WT+ I+ H +G EA F G + IT ++ CA D S
Sbjct: 124 VTWTAMIAGHAAAGEAREAVALFREAVARGQEVNGITVAQVMGACAQSRDLESGRWVHAT 183
Query: 97 -----------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
+V ++TA+L MYA G +D A VFD M R W A+ +
Sbjct: 184 LRRWGVEPILLDVALATAVLHMYASCGGLDAAFEVFDKMPRRNEVSWNAMAEVCSRHGRQ 243
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
++ LE F M G++PD +T +S+L C + G+G +H Y+ K +V VC +L
Sbjct: 244 DKVLEVFPGMHSVGMKPDKVTWLSILRACTSKGAAGLGQGVHAYMEKTIGHRHVAVCTSL 303
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
MD+YS+ G A Q+FQ + ++ L++W S+I+G A +G +A++ FN MQ G D
Sbjct: 304 MDMYSKIGNARSALQIFQCLKRKDLMAWTSMIIGLAKHGHGKDAVQLFNQMQHGGVVPDH 363
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F G LTACSHAG++++ +YFD M Y + P I+H+GC+
Sbjct: 364 VAFVGVLTACSHAGMVDEARKYFDSMWNHYGIRPTIKHYGCM 405
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 150/281 (53%), Gaps = 23/281 (8%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------- 94
+T+ I SG LEA ++RM P + ++L C
Sbjct: 105 YTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRAL 164
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVM------RGCDFWTALLNGFVKRDYFE 144
S+N +V ++++Y K G + A VF+ M + WTA+++GFV+ +
Sbjct: 165 KLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETN 224
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
ALE FR MQ V P+ TI+ VL+ C+ + L IG W+H Y+ K + + N+ V N L+
Sbjct: 225 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALI 284
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
++YSR G I+ A+ VF M R ++++N++I G ++NG +A+E F +M + V
Sbjct: 285 NMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNV 344
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L ACSH GL++ G + F M + YRV PQIEH+GC+
Sbjct: 345 TFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCM 385
>gi|222640847|gb|EEE68979.1| hypothetical protein OsJ_27898 [Oryza sativa Japonica Group]
Length = 596
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 147/282 (52%), Gaps = 22/282 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSN------ 96
V WT+ I+ H +G EA F G + IT ++ CA D S
Sbjct: 125 VTWTAMIAGHAAAGEAREAVALFREAVARGQEVNGITVAQVMGACAQSRDLESGRWVHAT 184
Query: 97 -----------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
+V ++TA+L MYA G +D A VFD M R W A+ +
Sbjct: 185 LRRWGVEPILLDVALATAVLHMYASCGGLDAAFEVFDKMPRRNEVSWNAMAEVCSRHGRQ 244
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
++ LE F M G++PD +T +S+L C + G+G +H Y+ K +V VC +L
Sbjct: 245 DKVLEVFPGMHSVGMKPDKVTWLSILRACTSKGAAGLGQGVHAYMEKTIGHRHVAVCTSL 304
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
MD+YS+ G A Q+FQ + ++ L++W S+I+G A +G +A++ FN MQ G D
Sbjct: 305 MDMYSKIGNARSALQIFQCLKRKDLMAWTSMIIGLAKHGHGKDAVQLFNQMQHGGVVPDH 364
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F G LTACSHAG++++ +YFD M Y + P I+H+GC+
Sbjct: 365 VAFVGVLTACSHAGMVDEARKYFDSMWNHYGIRPTIKHYGCM 406
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 156/282 (55%), Gaps = 25/282 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN------- 96
+ V W + +S + ++G EA F M G P T+VT++S C+
Sbjct: 224 SVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLV 283
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
N V TALLDMYAKFG +D A +F+ M G + W +++ G+ +
Sbjct: 284 RTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSA 343
Query: 145 EALEYFRVM-QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
A+E F+ M + PD +T++SV++ C ++ L +G W+ R++ + K ++ N +
Sbjct: 344 MAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAM 403
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+ +YSR G +E A++VFQ M R +VS+N++I GFA +G EA+ + M++G + D
Sbjct: 404 IFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDR 463
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F G LTACSHAGL+E+G + F+ +K P I+H+ C+
Sbjct: 464 VTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACM 500
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 106/193 (54%), Gaps = 3/193 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P NV+ TA++ YAK ++ A FD M R W A+L+G+ + EEAL F
Sbjct: 189 MPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLF 248
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M +G+EPD T ++V++ C++ + + R + ++ + N V L+D+Y++F
Sbjct: 249 DEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKF 308
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVSFTGA 269
G ++ AR++F M R +V+WNS+I G+A NG A+E F ++ DEV+
Sbjct: 309 GDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSV 368
Query: 270 LTACSHAGLIEDG 282
++AC H G +E G
Sbjct: 369 ISACGHLGALELG 381
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 43/187 (22%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKRDYFEEALEYF 150
++ V A++DMYA+ G + A VFD + R W A+++G+ K +
Sbjct: 127 GSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWE--------- 177
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+ G W+ +P++ NV ++ Y++
Sbjct: 178 --------------------------SEGQAQWLFDVMPER----NVITWTAMVTGYAKV 207
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
+E AR+ F M +R++VSWN+++ G+A NG EAL F+ M + DE ++ +
Sbjct: 208 KDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVI 267
Query: 271 TACSHAG 277
+ACS G
Sbjct: 268 SACSSRG 274
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
+ MQ GV PD ++ T GIG H +V K + V N ++D+Y+R
Sbjct: 88 YEQMQGCGVRPDAFVYPILIKSAG---TGGIGF--HAHVLKLGHGSDAFVRNAVIDMYAR 142
Query: 210 FGCIEFARQVFQRM--HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
G I AR+VF + ++R + WN+++ G+ G+A F++M + + +++T
Sbjct: 143 LGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMP----ERNVITWT 198
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVS 296
+T + +E +YFD M + VS
Sbjct: 199 AMVTGYAKVKDLEAARRYFDCMPERSVVS 227
>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
Length = 581
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 153/281 (54%), Gaps = 20/281 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------- 91
TV W + IS + R G +A F +M +T + L A
Sbjct: 161 TVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHS 220
Query: 92 ----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+ N + ++L+ MYAK G ++ A VF M R WT++++G+ + F+E
Sbjct: 221 LVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKE 280
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ FR MQI+G++ D TI +V++ CA + L +G ++H Y + V N+L+D
Sbjct: 281 AVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLID 340
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEV 264
+YS+ G I A ++F + KR + SW ++I+GF VNG EAL+ F M+ +G +EV
Sbjct: 341 MYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMPNEV 400
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G LT+CSH GL+E G YF M +Y+++P+IEH+GC+
Sbjct: 401 TFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIEHYGCM 441
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL--VSWNSI 234
++ +G +H K + V N+L+++YS ARQV + VSWN+I
Sbjct: 108 SVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATARQVLDSAPQGACDTVSWNTI 167
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
I G+ G +AL+ F M K D+V+ AL A + AG ++ G
Sbjct: 168 ISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVG 215
>gi|218201434|gb|EEC83861.1| hypothetical protein OsI_29841 [Oryza sativa Indica Group]
Length = 595
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 147/282 (52%), Gaps = 22/282 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSN------ 96
V WT+ I+ H +G EA F G + IT ++ CA D S
Sbjct: 124 VTWTAMIAGHAAAGEAREAVALFREAVARGQEVNGITVAQVMGACAQSRDLESGRWVHAT 183
Query: 97 -----------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
+V ++TA+L MYA G +D A VFD M R W A+ +
Sbjct: 184 LRRWGVEPILLDVALATAVLHMYASCGGLDAAFEVFDKMPRRNEVSWNAMAEVCSRHGRQ 243
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
++ LE F M G++PD +T +S+L C + G+G +H Y+ K +V VC +L
Sbjct: 244 DKVLEVFPGMHSVGMKPDKVTWLSILRACTSKGAAGLGQGVHAYMEKTIGHRHVAVCTSL 303
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
MD+YS+ G A Q+FQ + ++ L++W S+I+G A +G +A++ FN MQ G D
Sbjct: 304 MDMYSKIGNARSALQIFQCLKRKDLMAWTSMIIGLAKHGHGKDAVQLFNQMQHGGVVPDH 363
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F G LTACSHAG++++ +YFD M Y + P I+H+GC+
Sbjct: 364 VAFVGVLTACSHAGMVDEARKYFDSMWNHYGIRPTIKHYGCM 405
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 157/284 (55%), Gaps = 23/284 (8%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
+ V WT IS + R+G EA F +M + P+ TFV++L C
Sbjct: 168 VRDVVSWTGLISGYVRTGLFDEAINLFLKMDVV---PNVATFVSVLVACGRMGYLSMGKG 224
Query: 95 ----------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
++V AL+DMY K + A +FD + D WT++++G V+
Sbjct: 225 VHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQ 284
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+++LE F MQISGVEPD + + SVL+ CA++ L G W+ Y+ +Q + ++ +
Sbjct: 285 PKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTA 344
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+Y++ GCIE A +F + R + +WN+++ G A++G EAL++F LM + +
Sbjct: 345 LVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPN 404
Query: 263 EVSFTGALTACSHAGLIEDGLQYF-DIMKKIYRVSPQIEHHGCI 305
EV+F LTAC H+GL+ +G YF ++ + + SP++EH+GC+
Sbjct: 405 EVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCM 448
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L Y R++ +G PD T VL C + G +H K F ++ V N+L+
Sbjct: 91 LVYGRIVG-NGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHF 149
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
YS G A +VF M R +VSW +I G+ G EA+ NL K + +F
Sbjct: 150 YSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAI---NLFLKMDVVPNVATF 206
Query: 267 TGALTACSHAGLIEDG 282
L AC G + G
Sbjct: 207 VSVLVACGRMGYLSMG 222
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 145/255 (56%), Gaps = 21/255 (8%)
Query: 71 MRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAKFGR 113
+R P+ T L CA P+ + V T LL++YAK +
Sbjct: 117 LRAGSPRPNTFTLAFALKACAAVPAPGEGRQLHAQALRQGLEASAYVQTGLLNLYAKCEQ 176
Query: 114 MDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN 170
+ LA VFD M + W+A++NG+ + EAL FR MQ GVEPD +T++ V++
Sbjct: 177 VALARTVFDGMAPDKSLVAWSAMINGYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVIS 236
Query: 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS 230
CA L +G W+H Y+ ++ ++ + L+D+Y++ G IE AR VF M ++ +
Sbjct: 237 ACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKA 296
Query: 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
W+++IVGFA++G V +AL F+ M + + + V+F G L+AC+H+GL++DG +Y+ IM+
Sbjct: 297 WSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVDDGRRYWSIMQ 356
Query: 291 KIYRVSPQIEHHGCI 305
+ + P +E++GC+
Sbjct: 357 NL-GIKPSMENYGCM 370
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 157/284 (55%), Gaps = 19/284 (6%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA--------- 91
T T V WT+ I+ RS + E F RM+ P+ IT ++L+ C
Sbjct: 259 TQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGK 318
Query: 92 --------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRD 141
+ S ++ ++TAL+DMY K + A +FD + D WTA+L+ + + +
Sbjct: 319 QLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQAN 378
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
++A F M+ SGV P +TI+S+L++CA L +G W+H Y+ K+ + + +
Sbjct: 379 CIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNT 438
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+D+Y++ G I A ++F R + WN+II GFA++G+ EAL+ F M++ K
Sbjct: 439 ALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKP 498
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++++F G L ACSHAGL+ +G + F+ M + + PQIEH+GC+
Sbjct: 499 NDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCM 542
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 100/192 (52%), Gaps = 4/192 (2%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+V V AL+ MY + ++ A +VFD M D W+ ++ + F+ ALE R M
Sbjct: 128 DVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMN 187
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT--LMDVYSRFGC 212
V P + ++S++N+ A+ + +G MH YV + +++ V T L+D+Y++ G
Sbjct: 188 FMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGH 247
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+ ARQ+F + ++T+VSW ++I G + + E + F MQ+ +E++ +
Sbjct: 248 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVE 307
Query: 273 CSHAGLIEDGLQ 284
C G ++ G Q
Sbjct: 308 CGFTGALQLGKQ 319
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
SVL C V +G +H +V K+ +V V N LM +Y C+E+AR VF +M +R
Sbjct: 99 SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
+VSW+++I + N ALE M + EV+
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAM 198
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 131/215 (60%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P +++ T +L Y+K G +D A +F+ M+ D W ++ G+ + E+L+ F
Sbjct: 202 MPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLF 261
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R M ++ P+ +T+++VL+ C + L G W+H Y+ + + NV V L+D+YS+
Sbjct: 262 RRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKC 321
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G +E AR VF R+ + +V+WNS+IVG+A++GF AL+ F M + K +++F G L
Sbjct: 322 GSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGIL 381
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+AC H GL+E+G +F +M+ Y + P+IEH+GC+
Sbjct: 382 SACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCM 416
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 37/220 (16%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVKRDYFEEALEYFRVM 153
+N +++ L YA GR+D + VF+ + ++ A+++ V+ F+ A Y+ M
Sbjct: 77 HNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQM 136
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
GVEP+ T SVL C +L G +H K ++ V L+DVY+R G +
Sbjct: 137 LSCGVEPNAFTFSSVLKSC----SLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDV 192
Query: 214 EFARQVFQRMHKRTLVS-------------------------------WNSIIVGFAVNG 242
ARQ+F +M +R+LVS WN +I G+A +G
Sbjct: 193 VCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSG 252
Query: 243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
E+L+ F M +EV+ L+AC G +E G
Sbjct: 253 VPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESG 292
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 23/234 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W I + +SG E+ F RM + P+ +T + +LS C +
Sbjct: 239 VCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSY 298
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
NV V TAL+DMY+K G ++ A +VFD +R D W +++ G+ + + A
Sbjct: 299 IENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHA 358
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV-PKQDFKDNVRVCNTLMD 205
L+ F M +G +P +T I +L+ C + + G R + K + + +++
Sbjct: 359 LQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVN 418
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSII--VGFAVNGFVGEALEYFNLMQK 256
+ R G +E A + + M V W +++ VN +GE + F + QK
Sbjct: 419 LLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQK 472
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 128/212 (60%), Gaps = 5/212 (2%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
+ V +LL +YA G + A VFD M D W +++NGF + EEAL + M
Sbjct: 156 IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS 215
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
G++PD TI+S+L+ CA + L +G +H Y+ K N+ N L+D+Y+R G +E
Sbjct: 216 KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 275
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ--KGVFKTDEVSFTGALTAC 273
A+ +F M + VSW S+IVG AVNGF EA+E F M+ +G+ E++F G L AC
Sbjct: 276 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC-EITFVGILYAC 334
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH G++++G +YF M++ Y++ P+IEH GC+
Sbjct: 335 SHCGMVKEGFEYFRRMREEYKIEPRIEHFGCM 366
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISG-VEPD---YLTIISVLNVCANVRTLGIGLWM 184
W L+ G+ + A +R M++SG VEPD Y +I + A+VR +G +
Sbjct: 87 IWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVR---LGETI 143
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
H V + F + V N+L+ +Y+ G + A +VF +M ++ LV+WNS+I GFA NG
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
EAL + M K D + L+AC+ G + G + M K+
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV 251
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 24/220 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I+ +G EA +T M G P T V+LLS CA +
Sbjct: 188 VAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVY 247
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N+ S LLD+YA+ GR++ A +FD M + WT+L+ G + +EA
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 307
Query: 147 LEYFRVMQ-ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN--TL 203
+E F+ M+ G+ P +T + +L C++ + G R + ++++K R+ + +
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRM-REEYKIEPRIEHFGCM 366
Query: 204 MDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
+D+ +R G ++ A + + M + +V W +++ V+G
Sbjct: 367 VDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 148/262 (56%), Gaps = 19/262 (7%)
Query: 63 EAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV-----------------MVSTALL 105
E+ L + RM L + S+ TF ++ AD + ++ V AL+
Sbjct: 101 ESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALV 160
Query: 106 DMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
YAK G + +A VFD M + W ++++G+ + + +EA+E F +MQ GV+PD
Sbjct: 161 SFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSS 220
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T +S+L+ CA V +G+G W+H Y+ + F NV + LM++YSR G + AR+VF M
Sbjct: 221 TFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSM 280
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
++ +V+W ++I G+ ++G +A+E FN M + + V+F L+AC+HAGL+++G
Sbjct: 281 EEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGR 340
Query: 284 QYFDIMKKIYRVSPQIEHHGCI 305
Q F MK+ Y + P +EH C+
Sbjct: 341 QIFTTMKQEYGLVPSVEHQVCM 362
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 19/151 (12%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN------- 96
T V W S IS + ++G EA F M+ G P TFV+LLS CA +
Sbjct: 183 TVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVH 242
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
NV++ TAL++MY++ G + A VFD M + WTA+++G+ +
Sbjct: 243 EYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGS 302
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANV 175
+A+E F M G P+ +T ++VL+ CA+
Sbjct: 303 QAIELFNEMSFDGPRPNNVTFVAVLSACAHA 333
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 152/286 (53%), Gaps = 19/286 (6%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---- 94
+ T T V W S I + ++G A F +M +++T + L CAD
Sbjct: 336 RMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQ 395
Query: 95 -------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
++V V +L+ MY+K R+D+A +F+ ++ W A++ G+ +
Sbjct: 396 GRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQ 455
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
EA++YF MQ+ ++PD T++SV+ A + L W+H V + NV V
Sbjct: 456 NGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFV 515
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
L+D+Y++ G + AR++F M +R + +WN++I G+ +G ALE F M+K V
Sbjct: 516 ATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVI 575
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
K +EV+F L+ACSH+GL+E+G QYF MKK Y + P ++H+G +
Sbjct: 576 KPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAM 621
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 124/247 (50%), Gaps = 19/247 (7%)
Query: 55 HCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNN 97
+ R+ + +A F RMR G P F LL C D ++N
Sbjct: 150 YARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASN 209
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
V T +++MYAK ++ A +FD M D W +++G+ + + + ALE MQ
Sbjct: 210 VFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQE 269
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
G PD +TI+S+L A+V +L IG +H Y + F+ V V L+D+YS+ G +
Sbjct: 270 EGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGT 329
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
AR +F RM +T+VSWNS+I G+ NG G A+E F M + V+ GAL AC+
Sbjct: 330 ARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACAD 389
Query: 276 AGLIEDG 282
G +E G
Sbjct: 390 LGDVEQG 396
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 137/254 (53%), Gaps = 21/254 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFT-RMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V W + IS + ++G + ALE RM+ G P IT V++L AD S
Sbjct: 242 VCWNTIISGYAQNG-FGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHG 300
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ V VSTAL+DMY+K G + A ++FD M G W ++++G+V+
Sbjct: 301 YSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGA 360
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+E F+ M VE +T++ L+ CA++ + G ++H+ + + + +V V N+L+
Sbjct: 361 AMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLIS 420
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ ++ A ++F+ + +TLVSWN++I+G+A NG + EA++YF MQ K D +
Sbjct: 421 MYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFT 480
Query: 266 FTGALTACSHAGLI 279
+ A + ++
Sbjct: 481 MVSVIPALAELSVL 494
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 91/186 (48%), Gaps = 2/186 (1%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVMRGC--DFWTALLNGFVKRDYFEEALEYFRVMQIS 156
+ T L+ ++ KFG + A VF + + + +L G+ + ++A+ +F M+
Sbjct: 110 LFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYD 169
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
GV P +L VC + L G +H + F NV ++++Y++ +E A
Sbjct: 170 GVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEA 229
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
++F RM +R LV WN+II G+A NGF ALE MQ+ + D ++ L A +
Sbjct: 230 YKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADV 289
Query: 277 GLIEDG 282
G + G
Sbjct: 290 GSLRIG 295
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 144/280 (51%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSN----- 96
V WT+ I + SGC EA F + G P T V +L C+ D S
Sbjct: 168 VVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDG 227
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
NV V+T+L+DMYAK G M+ A VFD M D W+AL+ G+ +E
Sbjct: 228 YMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKE 287
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL+ F MQ V PD ++ V + C+ + L +G W + +F N + L+D
Sbjct: 288 ALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALID 347
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
Y++ G + A++VF+ M ++ V +N++I G A+ G VG A F M K + D +
Sbjct: 348 FYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNT 407
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L C+HAGL++DG +YF M ++ V+P IEH+GC+
Sbjct: 408 FVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCM 447
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 122/240 (50%), Gaps = 20/240 (8%)
Query: 63 EAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN------------------NVMVSTAL 104
+A + MR +G P + TF +L C P +V V T L
Sbjct: 84 DAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGL 143
Query: 105 LDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+ +Y+K G + A VFD + + WTA++ G+++ F EAL FR + G+ PD
Sbjct: 144 VCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDS 203
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T++ +L C+ V L G W+ Y+ + NV V +L+D+Y++ G +E AR+VF
Sbjct: 204 FTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDG 263
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M ++ +V W+++I G+A NG EAL+ F MQ+ + D + G +ACS G +E G
Sbjct: 264 MVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELG 323
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 85/182 (46%), Gaps = 3/182 (1%)
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
LL F ATVVF + + L+ G V D F +A+ + M+ G PD
Sbjct: 41 LLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPD 100
Query: 162 YLTIISVLNVCANV-RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
T VL C + +GL +H V K F +V V L+ +YS+ G + AR+VF
Sbjct: 101 NFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVF 160
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
+ ++ +VSW +II G+ +G GEAL F + + + D + L ACS G +
Sbjct: 161 DEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLA 220
Query: 281 DG 282
G
Sbjct: 221 SG 222
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 158/287 (55%), Gaps = 23/287 (8%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTR-MRLYGTNPSHITFVTLLSGCADFPS---- 95
++ V W + IS + + C + ALE + M P T VT++S CA S
Sbjct: 158 SVKDVVSWNAMISGYVET-CNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELG 216
Query: 96 -------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKR 140
+N+ + L+D+Y+K G ++ A +F + D W L+ G
Sbjct: 217 RQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHM 276
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVR 198
+ ++EAL F+ M SG P+ +T++SVL CA++ + IG W+H Y+ K + +
Sbjct: 277 NLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASS 336
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
+ +L+D+Y++ G IE A+QVF M R+L SWN++I GFA++G A + F+ M+K
Sbjct: 337 LLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNG 396
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSH+G+++ G F M + Y+++P++EH+GC+
Sbjct: 397 IDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCM 443
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 109/188 (57%), Gaps = 2/188 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+V+ TAL+ YA G ++ A +FD + D W A+++G+V+ F+EALE ++ M
Sbjct: 130 HVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMM 189
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ V+PD T+++V++ CA ++ +G +H ++ F N+++ N L+D+YS+ G +E
Sbjct: 190 KTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVE 249
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +FQ + K+ ++SWN++I G EAL F M + ++V+ L AC+
Sbjct: 250 TACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACA 309
Query: 275 HAGLIEDG 282
H G I+ G
Sbjct: 310 HLGAIDIG 317
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 33/207 (15%)
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + A +F+ ++ + W + G AL+ + M G+ P+ + +
Sbjct: 12 FDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFL 71
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L CA + L G +H +V K + ++ V +L+ +Y++ G +E A +VF R R +
Sbjct: 72 LKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHV 131
Query: 229 VSWNSIIVGFAVNGFVG-------------------------------EALEYFNLMQKG 257
VS+ ++I G+A G++ EALE + M K
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKT 191
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQ 284
K DE + ++AC+ +G IE G Q
Sbjct: 192 NVKPDESTMVTVVSACAQSGSIELGRQ 218
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 152/276 (55%), Gaps = 20/276 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG---------------- 89
V WT+ I+ ++ +A L F +M G P+H T +LL
Sbjct: 155 VTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAF 214
Query: 90 CADFP-SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
C + ++V V +AL+DMYA+ G MD A + FD M + W AL++G ++ E A
Sbjct: 215 CLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHA 274
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L MQ +P + T SV + CA++ L G W+H ++ K K + NTL+D+
Sbjct: 275 LHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDM 334
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G I+ A++VF R+ K +VSWN+++ G A +G E L+ F M + + +E+SF
Sbjct: 335 YAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISF 394
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
LTACSH+GL+++GL YF++MKK Y+V P + H+
Sbjct: 395 LCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHY 429
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 104/192 (54%), Gaps = 2/192 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
F N++++ +++MYAK G +D A +FD M D WTAL+ GF + + +AL F
Sbjct: 118 FLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLF 177
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M G++P++ T+ S+L + L G +H + K ++ +V V + L+D+Y+R
Sbjct: 178 PQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARC 237
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G ++ A+ F M ++ VSWN++I G A G AL MQ+ F+ +++
Sbjct: 238 GHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVF 297
Query: 271 TACSHAGLIEDG 282
+AC+ G +E G
Sbjct: 298 SACASIGALEQG 309
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 20/212 (9%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN------ 97
+ V W + IS H R G A +M+ P+H T+ ++ S CA +
Sbjct: 254 SEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVH 313
Query: 98 -----------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ LLDMYAK G +D A VFD + D W +L G + +
Sbjct: 314 AHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGK 373
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E L+ F M G+EP+ ++ + VL C++ L GL+ + K + +V T +
Sbjct: 374 ETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFV 433
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
D+ R G ++ A + + M + T W +++
Sbjct: 434 DLLGRVGLLDRAERFIREMPIEPTAAVWGALL 465
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC-NTLMDVYSRF 210
++Q + PDY +L C + + G +H ++ F DN V N ++++Y++
Sbjct: 77 LIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKC 136
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
GC++ AR++F M + +V+W ++I GF+ N +AL F M + + + + + L
Sbjct: 137 GCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLL 196
Query: 271 TACSHAGLIEDGLQ 284
A ++ G Q
Sbjct: 197 KASGSEHGLDPGTQ 210
>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
Length = 619
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/263 (38%), Positives = 144/263 (54%), Gaps = 19/263 (7%)
Query: 62 LEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVM---------------VSTALLD 106
L AA F M T P+ TF LL CA FP V VS L+
Sbjct: 128 LRAASFFPLMLRSATLPNKFTFPFLLKACAAFPGVGVQAHAAALKFGFTTDQYVSNTLIH 187
Query: 107 MYAKFGRMDL--ATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
MY+ FG L A VFD M W+A++ G+V+ +A+ FR MQ SGV PD
Sbjct: 188 MYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDE 247
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
+T+I VL A++ L + W+ R+V K+ +V +CN L+D ++ G ++ A VFQ
Sbjct: 248 VTMIGVLAAAADLGALELARWVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQG 307
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M +RT+VSW S+I A+ G EA+ F M+ + D+V+F G LTACSHAG++++G
Sbjct: 308 MKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEG 367
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
YF+ M+ Y + P+IEH+GC+
Sbjct: 368 YGYFESMRMAYGIDPKIEHYGCM 390
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 21/220 (9%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
+ V W++ I + RSG +A F M+ G P +T + +L+ A
Sbjct: 211 SAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVG 270
Query: 92 -----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+ +V + AL+D AK G +D A VF M R WT++++ +
Sbjct: 271 RFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGK 330
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTL 203
EA+ F M+ +GV PD + I VL C++ + G + + +
Sbjct: 331 EAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCM 390
Query: 204 MDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
+D++ R G +E A + +M K + W +++ +G
Sbjct: 391 VDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHG 430
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 155/280 (55%), Gaps = 16/280 (5%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF-PS----- 95
+ V WT+ IS + ++G A F +MR G P+H T+ T+L+ A PS
Sbjct: 358 VQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHAL 417
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
N+ V TAL D Y+K G + A +F+++ D W+A+L+G+ + E A
Sbjct: 418 VVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGA 477
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCAN-VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
++ F + GVEP+ T SVLN CA ++ G H K F + + V + L+
Sbjct: 478 VKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVT 537
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G IE A +VF+R R LVSWNS+I G+A +G ++L+ F M+ + D ++
Sbjct: 538 MYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGIT 597
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G ++AC+HAGL+ +G +YFD+M K Y + P +EH+ C+
Sbjct: 598 FIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCM 637
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 2/181 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+V V T+L+DMY K ++ VFD MR + WT+LL G+ + E+AL+ F MQ
Sbjct: 126 DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQ 185
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ G++P+ T +VL A + G+ +H V K + V N+++++YS+ +
Sbjct: 186 LEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVS 245
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A+ VF M R VSWNS+I GF NG EA E F M+ K + F + C+
Sbjct: 246 DAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCA 305
Query: 275 H 275
+
Sbjct: 306 N 306
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 20/251 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V WTS ++ + ++G +A F++M+L G P+ TF +L G A +
Sbjct: 155 VKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ 214
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
+ + V ++++MY+K + A VFD M R W +++ GFV
Sbjct: 215 VHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGL 274
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
EA E F M++ GV+ +V+ +CAN++ + +H V K ++ +
Sbjct: 275 DLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTA 334
Query: 203 LMDVYSRFGCIEFARQVFQRMHK-RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
LM YS+ I+ A ++F MH + +VSW +II G+ NG A+ F M++ +
Sbjct: 335 LMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRP 394
Query: 262 DEVSFTGALTA 272
+ +++ LTA
Sbjct: 395 NHFTYSTILTA 405
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
LL F + D +EAL F ++ SG D ++ VL VC + +G +H K
Sbjct: 63 LLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCG 122
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
F ++V V +L+D+Y + +E +VF M + +VSW S++ G+ NG +AL+ F+
Sbjct: 123 FVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFS 182
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
MQ K + +F L + G +E G+Q
Sbjct: 183 QMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ 214
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 155/285 (54%), Gaps = 21/285 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + IS + +G EA F M P T VT++S A S
Sbjct: 157 VKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQ 216
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ + AL+D Y+K G M+ A +F + D W L+ G+ +
Sbjct: 217 VHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNL 276
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVC 200
++EAL F+ M SG P+ +T++S+L+ CA++ + IG W+H Y+ K + + +
Sbjct: 277 YKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 336
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+L+D+YS+ G IE A QVF M ++L +WN++I GFA++G A + F+ M+K K
Sbjct: 337 TSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIK 396
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSHAG+++ G F M Y+++P++EH+GC+
Sbjct: 397 PDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCM 441
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 123/285 (43%), Gaps = 50/285 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----------- 96
W + H S + A + M G P+ TF LL CA ++
Sbjct: 31 WNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKASKEGLQIHGHVL 90
Query: 97 ------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--------------------- 129
++ V T+L+ MY + R++ A VFD D
Sbjct: 91 KLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARN 150
Query: 130 ------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
W A+++G+V+ ++EALE F+ M + V PD T+++V++ A +
Sbjct: 151 MFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGS 210
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+ +G +H ++ F N+++ N L+D YS+ G +E A +F + + ++SWN +I G
Sbjct: 211 IELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGG 270
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ EAL F M + ++V+ L AC+H G I+ G
Sbjct: 271 YTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIG 315
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 88/207 (42%), Gaps = 33/207 (15%)
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + A VF+ ++ + W + G AL+ + M G+ P+ T +
Sbjct: 10 FEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFL 69
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L CA ++ GL +H +V K ++ ++ V +L+ +Y + +E A +VF R R +
Sbjct: 70 LKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDV 129
Query: 229 VSWNSIIVGFAVNGFV-------------------------------GEALEYFNLMQKG 257
VS+ +++ G+A G++ EALE F M K
Sbjct: 130 VSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKT 189
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ DE + ++A + +G IE G Q
Sbjct: 190 NVRPDESTMVTVISASARSGSIELGRQ 216
>gi|218199092|gb|EEC81519.1| hypothetical protein OsI_24907 [Oryza sativa Indica Group]
Length = 460
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 138/263 (52%), Gaps = 24/263 (9%)
Query: 65 ALEFTRMRLYGTNPSHITFVTLLSGCADF------------PSNN-----VMVSTALLDM 107
ALE R RL P T+ LL CA + N V V +L+ +
Sbjct: 103 ALELHRRRL--ALPDTHTYPPLLQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHL 160
Query: 108 YAKFGRMDLATVVFDVM--RGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
Y G + A VFD M RG + W ++LN F E L F M PD
Sbjct: 161 YGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGF 220
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
TI+SVL CA L +G +H YV K +N V N L+D+Y++ G + AR++F+ M
Sbjct: 221 TIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEM 280
Query: 224 H-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
RT+VSW S+IVG A NGF EALE F+LM++ E++ G L ACSH GL++DG
Sbjct: 281 GLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDG 340
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
+YFD MK+ Y +SP+IEH GC+
Sbjct: 341 FRYFDRMKEDYGISPRIEHLGCM 363
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 133/216 (61%), Gaps = 2/216 (0%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEY 149
D P V+ T+++ Y G++D A +F+ +R WTA++NG+V+ + F++A+
Sbjct: 293 DMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVAL 352
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
FR MQI V PD T++++L CA + TL G W+H Y+ + + V L+++Y++
Sbjct: 353 FREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAK 412
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G IE + ++F + ++ SW SII G A+NG +ALE F M + K D+++F G
Sbjct: 413 CGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGV 472
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH GL+E+G ++F M +Y++ P++EH+GC+
Sbjct: 473 LSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCL 508
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 26/266 (9%)
Query: 52 ISRHCRSGCILEAALEFTRMRLYGTNPSHIT--FVTLLSGCADFPSN------------- 96
I ++G +A L F ++R G +P + T FV GC
Sbjct: 104 IKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGL 163
Query: 97 --NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+ V +L+DMYA+ GR+ VF+ M D W L++G+VK +E+A++ FR
Sbjct: 164 EFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRR 223
Query: 153 MQI-SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
MQ S + P+ T++S L+ C ++ L +G +HRYV +Q +++ N L+D+Y + G
Sbjct: 224 MQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQ-LGFTIKIGNALVDMYCKCG 282
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
+ AR++F M +T++ W S++ G+ G + EA E F ++ + D V +T +
Sbjct: 283 HLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELF---ERSPVR-DVVLWTAMIN 338
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSP 297
+D + F M +I RVSP
Sbjct: 339 GYVQFNRFDDAVALFREM-QIKRVSP 363
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 3/174 (1%)
Query: 112 GRMDLATVVFDVMR--GCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
G + A +F+ + G + ++ F K F +A+ FR ++ G+ PD T V
Sbjct: 80 GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
+ + G ++ +V K + + VCN+LMD+Y+ G ++ RQVF+ M +R +V
Sbjct: 140 KAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVV 199
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALTACSHAGLIEDG 282
SWN +I G+ +A++ F M Q+ + +E + L+AC ++E G
Sbjct: 200 SWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELG 253
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 20/205 (9%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-- 95
+S + V WT+ I+ + + +A F M++ +P T V LL+GCA +
Sbjct: 323 ERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLE 382
Query: 96 -----------NNVM----VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFV 138
N +M V TAL++MYAK G ++ + +F+ ++ D WT+++ G
Sbjct: 383 QGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLA 442
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNV 197
+ALE F M +GV+PD +T I VL+ C++ + G R + + +
Sbjct: 443 MNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKL 502
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQR 222
L+D+ R G ++ A ++ ++
Sbjct: 503 EHYGCLIDLLGRAGQLDEAEELIEK 527
>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Cucumis sativus]
gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 156/286 (54%), Gaps = 19/286 (6%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--- 95
+ T ++V W S I+ + G ++A + + G P T ++LLS C +
Sbjct: 215 QKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIY 274
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK 139
+++ + L+ MY++ G + AT++FD M R C WTA+++G+ +
Sbjct: 275 GFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSE 334
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
++AL F M+ +G +PD +T++S+++ C LG+G W+ Y + K +V V
Sbjct: 335 VGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGLGHWIDNYASLHELKKDVVV 394
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
CN L+D+Y++ G + AR++F + RT+VSW ++I A+NG EAL+ F+L+ +
Sbjct: 395 CNALIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMIAACALNGEFREALDLFSLLSESGI 454
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ + ++F L AC H G +E G + F +M + Y ++P ++H+ C+
Sbjct: 455 EPNNITFLAVLQACCHGGYLEKGRECFMMMTERYGINPGLDHYSCM 500
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 117/262 (44%), Gaps = 23/262 (8%)
Query: 34 QTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF 93
Q N S + T W SSI G +A F +++L G P++ TF L CA
Sbjct: 6 QHLNCFSKLSTLTWWNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKL 65
Query: 94 PS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALL 134
+++ V TA++DMY K G++D A +FD M R W A++
Sbjct: 66 SHLTNSQIIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMI 125
Query: 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK 194
GF + + F M++ G PD T+I + + ++L +H +
Sbjct: 126 IGFSQIGSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLD 185
Query: 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNG-FVGEALEYF 251
+ V NT + YS+ G ++ A+ VF + K R+ VSWNS+I +A G +V Y
Sbjct: 186 ADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYK 245
Query: 252 NLMQKGVFKTDEVSFTGALTAC 273
L+ G FK D + L++C
Sbjct: 246 GLLCDG-FKPDASTIISLLSSC 266
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
T V WT+ I+ +G EA F+ + G P++ITF+ +L C
Sbjct: 422 TVVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAVLQACCH----------- 470
Query: 104 LLDMYAKFGR--MDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
Y + GR + T + + G D ++ +++ ++ EALE V+Q ++PD
Sbjct: 471 --GGYLEKGRECFMMMTERYGINPGLDHYSCMIDLLGRKGKLIEALE---VIQDMPMKPD 525
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYV 188
++L C + IG ++ RY+
Sbjct: 526 EGIWGALLGACKIHNNMEIGEYVSRYL 552
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 148/281 (52%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W S IS + + G EA F MR G P +T V++L C D
Sbjct: 195 VSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGF 254
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
N + +AL+DMY K G + A VFD M D W A++ G+ + EA
Sbjct: 255 VLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEA 314
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ F M+ +G PD +T+I VL+ C+ + L +G W+ + ++ + +V V + L+D+
Sbjct: 315 IVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDM 374
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK--GVFKTDEV 264
Y++ G ++ A +VF+ M + VSWN++I A +G EAL F M K G + +++
Sbjct: 375 YAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDI 434
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L+AC HAGL+++G Q F+ M + + P++EH+ C+
Sbjct: 435 TFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCM 475
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 109/185 (58%), Gaps = 2/185 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG 157
V+ +L+ MYA+ G M A VFD M D W ++++G+ K + +EA+ F M+ G
Sbjct: 165 VNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEG 224
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
EPD +T++SVL C ++ LG+G W+ +V ++ + N + + L+D+Y + G + AR
Sbjct: 225 FEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISAR 284
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+VF M + +V+WN+II G+A NG EA+ FN M++ D V+ L+ACS G
Sbjct: 285 RVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIG 344
Query: 278 LIEDG 282
++ G
Sbjct: 345 ALDLG 349
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%)
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
++ +E + ++ G++ + T + C NVR L G H V K + V ++
Sbjct: 109 YDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHS 168
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+ +Y+R G + FAR+VF M R LVSWNS+I G++ GF EA+ F M++ F+ D
Sbjct: 169 LITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPD 228
Query: 263 EVSFTGALTACSHAG 277
E++ L AC G
Sbjct: 229 EMTLVSVLGACGDLG 243
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 154/280 (55%), Gaps = 23/280 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC--------------- 90
V WT IS + ++G +A F RM + P+ TFV++L C
Sbjct: 251 VSWTGLISGYMKAGLFNDAVALFLRMDV---APNAATFVSILGACGKLGCLNLGKGIHGL 307
Query: 91 -ADFP-SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ +P ++VS L+DMY K + A +FD + D WT++++G V+ +E+
Sbjct: 308 VSKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQES 367
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F M SG EPD + + SVL+ CA++ L G W+H Y+ K +V + +L+D+
Sbjct: 368 LDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYGRWVHEYIDHSRIKWDVHIGTSLIDM 427
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ GCIE A+Q+F + + + +WN+ I G A+NG EAL+ F + + + +E++F
Sbjct: 428 YAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITF 487
Query: 267 TGALTACSHAGLIEDGLQYFDIM-KKIYRVSPQIEHHGCI 305
+AC H+GL+++G YF M Y +SP +EH+GC+
Sbjct: 488 LAVFSACCHSGLVDEGRSYFKQMTSPPYNLSPWLEHYGCM 527
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 3/150 (2%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
+++G+ ++ A+ +R + +G PD T+ +VL CA + +H K D
Sbjct: 155 IISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVKTD 214
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
++ V N+ + VYS G A +VF M R +VSW +I G+ G +A+ F
Sbjct: 215 LWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFL 274
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M + +F L AC G + G
Sbjct: 275 RMD---VAPNAATFVSILGACGKLGCLNLG 301
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 150/282 (53%), Gaps = 20/282 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
+ V +TS I+ + R G EA F M G +P T +L+ CA
Sbjct: 361 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVH 420
Query: 92 DFPSNNVM-----VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++ N M VS AL+DMYAK G M A +VF MR D W ++ G+ K Y
Sbjct: 421 EWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYAN 480
Query: 145 EALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EAL F ++ + PD T+ VL CA++ G +H Y+ + + + V N+L
Sbjct: 481 EALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSL 540
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G + AR +F + + LVSW +I G+ ++GF EA+ FN M++ + DE
Sbjct: 541 VDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDE 600
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+SF L ACSH+GL+++G ++F+IM+ ++ P +EH+ CI
Sbjct: 601 ISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACI 642
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 2/194 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG 157
V +L+ Y K R+D A VFD M D W +++NG+V E+ L F M SG
Sbjct: 232 VGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSG 291
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
+E D TI+SV CA+ R + +G +H + K F R CNTL+D+YS+ G ++ A+
Sbjct: 292 IEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAK 351
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
VF+ M R++VS+ S+I G+A G GEA++ F M++ D + T L C+
Sbjct: 352 VVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNR 411
Query: 278 LIEDGLQYFDIMKK 291
L+++G + + +K+
Sbjct: 412 LLDEGKRVHEWIKE 425
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 118/266 (44%), Gaps = 22/266 (8%)
Query: 37 NSKSTIDTTV-QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS 95
+S +T D +V + + R C SG + A + +P T ++L CAD S
Sbjct: 52 DSITTFDRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPR--TLCSVLQLCADSKS 109
Query: 96 --------NNVMVSTALLD---------MYAKFGRMDLATVVFDVMR--GCDFWTALLNG 136
N + + +LD MY G + A+ VFD ++ FW L+N
Sbjct: 110 LKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNE 169
Query: 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
K F ++ F+ M SGVE D T V +++R++ G +H Y+ K F +
Sbjct: 170 LAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGER 229
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
V N+L+ Y + ++ AR+VF M +R ++SWNSII G+ NG + L F M
Sbjct: 230 NSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLF 289
Query: 257 GVFKTDEVSFTGALTACSHAGLIEDG 282
+ D + C+ + LI G
Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLG 315
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 149/282 (52%), Gaps = 20/282 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF---------- 93
+ V +TS I+ + R G EA F M G +P T +L+ CA +
Sbjct: 361 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH 420
Query: 94 ---PSNN----VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
N+ + VS AL+DMYAK G M A +VF MR D W ++ G+ K Y
Sbjct: 421 EWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYAN 480
Query: 145 EALEYFRVM-QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EAL F ++ + PD T+ VL CA++ G +H Y+ + + + V N+L
Sbjct: 481 EALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSL 540
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G + A +F + + LVSW +I G+ ++GF EA+ FN M++ + DE
Sbjct: 541 VDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADE 600
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+SF L ACSH+GL+++G ++F+IM+ ++ P +EH+ CI
Sbjct: 601 ISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACI 642
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 2/194 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG 157
V +L+ Y K R+D A VFD M D W +++NG+V E+ L F M +SG
Sbjct: 232 VGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG 291
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
+E D TI+SV CA+ R + +G +H K F R CNTL+D+YS+ G ++ A+
Sbjct: 292 IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAK 351
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
VF+ M R++VS+ S+I G+A G GEA++ F M++ D + T L C+
Sbjct: 352 AVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYR 411
Query: 278 LIEDGLQYFDIMKK 291
L+++G + + +K+
Sbjct: 412 LLDEGKRVHEWIKE 425
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 117/266 (43%), Gaps = 22/266 (8%)
Query: 37 NSKSTIDTTV-QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS 95
+S +T D +V + + R C SG + A + +P T ++L CAD S
Sbjct: 52 DSITTFDRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPR--TLCSVLQLCADSKS 109
Query: 96 -------------NNVMVSTALLD----MYAKFGRMDLATVVFDVMR--GCDFWTALLNG 136
N ++ + L MY G + A+ VFD ++ FW L+N
Sbjct: 110 LKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNE 169
Query: 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
K F ++ F+ M SGVE D T V +++R++ G +H ++ K F +
Sbjct: 170 LAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGER 229
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
V N+L+ Y + ++ AR+VF M +R ++SWNSII G+ NG + L F M
Sbjct: 230 NSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLV 289
Query: 257 GVFKTDEVSFTGALTACSHAGLIEDG 282
+ D + C+ + LI G
Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLG 315
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 149/279 (53%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V W + I + ++G EA F +M G P++++ + L CA+
Sbjct: 310 VSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRL 369
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+V V +L+ MY+K R+D+A VF ++ W A++ G+ + EA
Sbjct: 370 LDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEA 429
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F MQ ++PD T++SV+ A++ W+H + NV VC L+D
Sbjct: 430 LNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDT 489
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
+++ G I+ AR++F M +R +++WN++I G+ NG EAL+ FN MQ G K +E++F
Sbjct: 490 HAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITF 549
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ ACSH+GL+E+G+ YF+ MK+ Y + P ++H+G +
Sbjct: 550 LSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAM 588
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 110/190 (57%), Gaps = 4/190 (2%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+N+ TA++++YAK +++ A +F+ M D W ++ G+ + + A++ M
Sbjct: 175 SNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQM 234
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q +G +PD +T++SVL A+++ L IG +H Y + F+ V V ++D Y + G +
Sbjct: 235 QEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSV 294
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTA 272
AR VF+ M R +VSWN++I G+A NG EA F ++ +GV T+ VS GAL A
Sbjct: 295 RSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTN-VSMMGALHA 353
Query: 273 CSHAGLIEDG 282
C++ G +E G
Sbjct: 354 CANLGDLERG 363
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 2/181 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFD-VMRGCD-FWTALLNGFVKRDYFEEALEYFRVM 153
N + T L+ ++ KF + A VF+ V D + +L G+ K +A+ ++ M
Sbjct: 74 NEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERM 133
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ V P +L + L G +H V F+ N+ ++++Y++ I
Sbjct: 134 RCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQI 193
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A ++F+RM +R LVSWN+++ G+A NGF A++ MQ+ K D ++ L A
Sbjct: 194 EDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAV 253
Query: 274 S 274
+
Sbjct: 254 A 254
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 20/200 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
T V W + I + ++GC+ EA F M+ + P T V++++ AD
Sbjct: 409 TVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIH 468
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
NV V TAL+D +AK G + A +FD+M R W A+++G+ +
Sbjct: 469 GLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGR 528
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTL 203
EAL+ F MQ V+P+ +T +SV+ C++ + G++ + + + + +
Sbjct: 529 EALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAM 588
Query: 204 MDVYSRFGCIEFARQVFQRM 223
+D+ R G ++ A + Q M
Sbjct: 589 VDLLGRAGRLDDAWKFIQDM 608
>gi|302790315|ref|XP_002976925.1| hypothetical protein SELMODRAFT_105729 [Selaginella moellendorffii]
gi|300155403|gb|EFJ22035.1| hypothetical protein SELMODRAFT_105729 [Selaginella moellendorffii]
Length = 395
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 149/275 (54%), Gaps = 17/275 (6%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF-------------- 93
WT +I+ H + G EA F M+L G P+ ITF+T L+ C+
Sbjct: 48 WTETIAEHTKRGMAKEALRIFQTMQLNGVAPNKITFLTALNSCSRLEDLRDIHDKIVQGG 107
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
+N MV+T ++ Y+KF A VFD +R D + ++ + K +EE+L F+
Sbjct: 108 AESNPMVATTIIHRYSKFSSSGKARQVFDKVRDPDVFVYNVMVAAYAKDGLYEESLGLFQ 167
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN-VRVCNTLMDVYSRF 210
MQ+ G+ PD +T +++L+ C + R L G +HR + + + + L+ +YS+
Sbjct: 168 RMQMEGITPDKITFLAMLDSCQDERALKTGQLVHRMIEETGLGSAMIDISTGLISMYSKC 227
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G +E A+ +F+ M +R++++W+SII +A + V +ALE F MQ+ F V+F L
Sbjct: 228 GDLEAAKAIFEAMEERSVITWSSIIAAYAHHNRVSQALELFEEMQQAGFAPSPVTFLSVL 287
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ACSH GL+ + YF M + Y ++P +H+GC+
Sbjct: 288 SACSHRGLLYRAITYFASMIQDYGLTPLGQHYGCV 322
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 148/282 (52%), Gaps = 20/282 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
+ V +TS I+ + R G EA F M G +P T +L+ CA +
Sbjct: 210 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH 269
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++ VS AL+DMYAK G M A +VF MR D W ++ G+ K Y
Sbjct: 270 EWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYAN 329
Query: 145 EALEYFRVM-QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EAL F ++ + PD T+ VL CA++ G +H Y+ + + + V N+L
Sbjct: 330 EALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSL 389
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G + A +F + + LVSW +I G+ ++GF EA+ FN M++ + DE
Sbjct: 390 VDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADE 449
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+SF L ACSH+GL+++G ++F+IM+ ++ P +EH+ CI
Sbjct: 450 ISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACI 491
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 2/194 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG 157
V +L+ Y K R+D A VFD M D W +++NG+V E+ L F M +SG
Sbjct: 81 VGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG 140
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
+E D TI+SV CA+ R + +G +H K F R CNTL+D+YS+ G ++ A+
Sbjct: 141 IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAK 200
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
VF+ M R++VS+ S+I G+A G GEA++ F M++ D + T L C+
Sbjct: 201 AVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYR 260
Query: 278 LIEDGLQYFDIMKK 291
L+++G + + +K+
Sbjct: 261 LLDEGKRVHEWIKE 274
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 75/154 (48%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
FW L+N K F ++ F+ M SGVE D T V +++R++ G +H ++
Sbjct: 11 FWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFI 70
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K F + V N+L+ Y + ++ AR+VF M +R ++SWNSII G+ NG + L
Sbjct: 71 LKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGL 130
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
F M + D + C+ + LI G
Sbjct: 131 SVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 164
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 100/279 (35%), Positives = 152/279 (54%), Gaps = 22/279 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTR-MRLYGTNPSHITFVTLLSGCAD-------------- 92
WT+ I+ + + G E AL+ R M L P+H TF + L CA+
Sbjct: 343 WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHA 402
Query: 93 ----FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
F S N V+ +L+ MYA+ GR+D A FD++ + + +++ + K EEA
Sbjct: 403 VKLGFSSVNC-VANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEA 461
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F ++ G+ T S+L+ A++ T+G G +H V K K N VCN L+ +
Sbjct: 462 LELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISM 521
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
YSR G IE A QVF+ M R ++SW SII GFA +GF +ALE F+ M + + +EV++
Sbjct: 522 YSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTY 581
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH GL+ +G ++F M + V P++EH+ CI
Sbjct: 582 IAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACI 620
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 120/267 (44%), Gaps = 27/267 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC--ADFPS-------- 95
+ W++ +S + A L F M G P+ F C A+F S
Sbjct: 134 ISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGF 193
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATV--VFDVM--RGCDFWTALLNGFVKRDYF 143
++V V L+DM+ K GR DL + VF+ M R WT ++ ++ Y
Sbjct: 194 VIKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYA 252
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EA++ F M SG EPD T+ V++ CAN+ L +G +H + + V L
Sbjct: 253 GEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCL 312
Query: 204 MDVYSRF---GCIEFARQVFQRMHKRTLVSWNSIIVGFA-VNGFVGEALEYFNLMQKGVF 259
+++Y++ G + AR++F ++ + SW ++I G+ G+ EAL+ F M
Sbjct: 313 INMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHV 372
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYF 286
+ +F+ L AC++ + G Q F
Sbjct: 373 IPNHFTFSSTLKACANLAALRIGEQVF 399
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 1/150 (0%)
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+A+ M G PD T L C R+ IG +H + + D + + N+
Sbjct: 47 LHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNS 106
Query: 203 LMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+ +YS+ G E A +F+ M R L+SW++++ FA N AL F M + +
Sbjct: 107 LISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP 166
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+E F A ACS A + G F + K
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVIK 196
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 148/252 (58%), Gaps = 6/252 (2%)
Query: 57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDL 116
RSGC A ++ + + +Y T + + + +V+ L+ +A+ G+M
Sbjct: 147 RSGCDSSAIVQNSLIEMY-TRAGDLALAHKVFD--EMRERDVVSWNMLISAHARLGQMRK 203
Query: 117 ATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
AT +F+ M + WTA+++G+ + A++ FR MQ G EPD ++I++VL CA
Sbjct: 204 ATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQ 263
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ TL +G W++ Y + + +CN LM++Y++ GCI+ A Q+F M + ++SW+++
Sbjct: 264 LGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTV 323
Query: 235 IVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
I G A +G EA+ F M+K G + + ++F G L+ACS+AGL+++GL +FD M +Y
Sbjct: 324 IGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVY 383
Query: 294 RVSPQIEHHGCI 305
V P +EH+GC+
Sbjct: 384 GVEPGVEHYGCV 395
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 38/198 (19%)
Query: 132 ALLNGFVKRDYFEEALE-YFRVMQISGVEPD------YLTIISVLNVCANVRTLGIGLWM 184
A++ + + +A+ Y R+++ PD T +L C L +G +
Sbjct: 82 AMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQV 141
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA----- 239
H +V + + V N+L+++Y+R G + A +VF M +R +VSWN +I A
Sbjct: 142 HTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQM 201
Query: 240 ---------------------VNGF--VGE---ALEYFNLMQKGVFKTDEVSFTGALTAC 273
V+G+ VG+ A++ F MQ F+ D+VS L AC
Sbjct: 202 RKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPAC 261
Query: 274 SHAGLIEDGLQYFDIMKK 291
+ G +E G + K+
Sbjct: 262 AQLGTLELGRWIYAYCKR 279
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 155/283 (54%), Gaps = 19/283 (6%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
+ V WT+ I+ + ++ E F M GT P+ +T V++L CA
Sbjct: 191 VRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKL 250
Query: 95 ----------SNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDY 142
+V ++ AL+ +Y K G ++ A +FD V++ W A++ + + +
Sbjct: 251 IHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNA 310
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
A++ FR MQ V+ DY+T++SV++ CA++ L G WMH V ++ + NV + N
Sbjct: 311 GANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNA 370
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+Y++ G I+ AR+VF+R+ R++VSW S+I A +G +AL+ F+ M+ K +
Sbjct: 371 LIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPN 430
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F TAC H+GL+E+G ++F+ M + Y + P +EH C+
Sbjct: 431 SFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACM 473
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 129/263 (49%), Gaps = 19/263 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W + I + +G EA ++ M G P + TF ++ CA +
Sbjct: 96 WNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIV 155
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALE 148
++V V ++L+ MY++ G +VF V+R WTA++ G+V+ YF+E L
Sbjct: 156 KHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLG 215
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
FR M SG +P+ +T++SVL CA + L +G +H Y K +V + N L+ +Y
Sbjct: 216 VFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYG 275
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G +E AR +F M + LVSWN++I + N A++ F MQ D ++
Sbjct: 276 KCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVS 335
Query: 269 ALTACSHAGLIEDGLQYFDIMKK 291
++AC+ G + G +++K+
Sbjct: 336 VISACASLGALNTGRWMHELVKR 358
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 120/275 (43%), Gaps = 30/275 (10%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + I+ + ++ A F RM+ + +IT V+++S CA +
Sbjct: 292 VQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRW 351
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
NV ++ AL+DMYAK G +DLA VF+ + R WT+++ +
Sbjct: 352 MHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGH 411
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK--DNVRVC 200
E+AL+ F M+ GV+P+ T +V C + + G H +D+ V C
Sbjct: 412 GEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGR-KHFESMMRDYSIMPGVEHC 470
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVS-WNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
++D+ R G + A + +M VS W +++ ++ LE L+ + +F
Sbjct: 471 ACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIH----SNLELAELVAEKLF 526
Query: 260 KTDEVSFTGALTAC---SHAGLIEDGLQYFDIMKK 291
D + T + + AG ED + +M++
Sbjct: 527 LLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEE 561
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+++AR++F +M KR + WN++I G+A G EAL ++ M D +F + +
Sbjct: 78 MDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRS 137
Query: 273 CSHAGLIEDG 282
C+ + +G
Sbjct: 138 CAVLSALREG 147
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 142/266 (53%), Gaps = 22/266 (8%)
Query: 62 LEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------------SNNVMVSTA 103
L AA F M P+ TF LL CA P + + VS
Sbjct: 108 LRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNT 167
Query: 104 LLDMYAKFGR--MDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
L+ MY+ FG + A VFD M W+A++ G+V+ +A+E FR MQ +GV+
Sbjct: 168 LIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQ 227
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
D +T+I VL ++ L + W+ R+V ++ +V +CN L+D ++ G ++ A V
Sbjct: 228 ADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAV 287
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F+ M +R++VSW S+I A+ G EA+ F M+ D+V+F G LTACSHAG++
Sbjct: 288 FEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMV 347
Query: 280 EDGLQYFDIMKKIYRVSPQIEHHGCI 305
++G YFD MK Y + P+IEH+GC+
Sbjct: 348 DEGCGYFDAMKVEYGIEPKIEHYGCM 373
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 23/222 (10%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
++ V W++ I + R G +A F M+ G +T + +L+ D +
Sbjct: 193 ESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWV 252
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
+V + AL+D AK G +D A VF+ M R WT++++
Sbjct: 253 RRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRG 312
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL--GIGLWMHRYVPKQDFKDNVRVCN 201
+EA+ F M+++GV PD + I VL C++ + G G + V + + +
Sbjct: 313 KEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKV-EYGIEPKIEHYG 371
Query: 202 TLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
++D++ R G +E A + + M + V W S++ +G
Sbjct: 372 CMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHG 413
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 158/285 (55%), Gaps = 21/285 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + IS + +G EA F M P T VT++S CA S
Sbjct: 185 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 244
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ + AL+D+Y+K G ++ A +F+ + D W L+ G+ +
Sbjct: 245 VHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNL 304
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVC 200
++EAL F+ M SG P+ +T++S+L CA++ + IG W+H Y+ K + + +
Sbjct: 305 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLR 364
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+L+D+Y++ G IE A QVF + ++L SWN++I GFA++G + + F+ M+K +
Sbjct: 365 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIE 424
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSH+G+++ G F M + Y+++P++EH+GC+
Sbjct: 425 PDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCM 469
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 108/191 (56%), Gaps = 2/191 (1%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P +V+ TAL+ YA G ++ A +FD + D W A+++G+ + ++EALE F+
Sbjct: 153 PHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 212
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M + V PD T+++V++ CA ++ +G +H ++ F N+++ N L+D+YS+ G
Sbjct: 213 DMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCG 272
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
+E A +F+ + + ++SWN++I G+ EAL F M + ++V+ L
Sbjct: 273 ELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 332
Query: 272 ACSHAGLIEDG 282
AC+H G I+ G
Sbjct: 333 ACAHLGAIDIG 343
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 33/207 (15%)
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + A VF+ ++ + W + G AL+ + M G+ P+ T +
Sbjct: 38 FDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFL 97
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF-------- 220
L CA + G +H +V K ++ V +L+ +Y + G +E A +VF
Sbjct: 98 LKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDV 157
Query: 221 -------------------QRMHK----RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
Q+M + +VSWN++I G+A G EALE F M K
Sbjct: 158 VSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 217
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ DE + ++AC+ +G IE G Q
Sbjct: 218 NVRPDESTMVTVVSACAQSGSIELGRQ 244
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 156/285 (54%), Gaps = 21/285 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + IS + +G EA F M P T VT++S CA S
Sbjct: 197 VKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQ 256
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ + AL+D+Y+K G ++ A +F + D W ++ G+ +
Sbjct: 257 VHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNL 316
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVC 200
++EAL F+ M SG P+ +T++S+L CA + + G W+H Y+ K + + +
Sbjct: 317 YKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLR 376
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+L+D+Y++ G IE A QVF MH RTL + N++I GFA++G A + F+ M+K +
Sbjct: 377 TSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIE 436
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSH+G+++ G + F M + Y+++P++EH+GC+
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCM 481
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 123/285 (43%), Gaps = 50/285 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----------- 96
W + H S + A + M G P+ TF LL CA +
Sbjct: 71 WNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVL 130
Query: 97 ------NVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFE---- 144
++ V T+L+ MY K GR A VFD R +TAL+ G+ R Y E
Sbjct: 131 KLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQK 190
Query: 145 ---------------------------EALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
EAL+ F+ M + V+PD T+++V++ CA +
Sbjct: 191 MFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGS 250
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+ +G +H ++ N+++ N L+D+YS+ G +E A +FQ + + ++SWN++I G
Sbjct: 251 IQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGG 310
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ EAL F M + ++V+ L AC+ G I+ G
Sbjct: 311 YTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFG 355
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 33/207 (15%)
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + A VF+ ++ + W + G A++ + M G+ P+ T +
Sbjct: 50 FDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFL 109
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR------------------- 209
L CA ++ G +H +V K ++ ++ V +L+ +Y +
Sbjct: 110 LKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDV 169
Query: 210 ------------FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
G IE A+++F + + +VSWN+II G+A G EAL+ F M K
Sbjct: 170 VSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKT 229
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQ 284
K DE + ++AC+ +G I+ G Q
Sbjct: 230 NVKPDESTMVTVVSACAQSGSIQLGRQ 256
>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
Length = 592
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 138/263 (52%), Gaps = 24/263 (9%)
Query: 65 ALEFTRMRLYGTNPSHITFVTLLSGCADF------------PSNN-----VMVSTALLDM 107
ALE R RL P T+ L+ CA + N V V +L+ +
Sbjct: 103 ALELHRRRL--ALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHL 160
Query: 108 YAKFGRMDLATVVFDVM--RGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
Y G + A VFD M RG + W ++LN F E L F M PD
Sbjct: 161 YGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGF 220
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
TI+SVL CA L +G +H YV K +N V N L+D+Y++ G + AR++F+ M
Sbjct: 221 TIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEM 280
Query: 224 H-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
RT+VSW S+IVG A NGF EALE F+LM++ E++ G L ACSH GL++DG
Sbjct: 281 GLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDG 340
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
+YFD MK+ Y +SP+IEH GC+
Sbjct: 341 FRYFDRMKEDYGISPRIEHLGCM 363
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 27/195 (13%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S ++ +G E F M P T V++L+ CA+F +
Sbjct: 185 VSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVY 244
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEE 145
N VS AL+D+YAK G ++ A +F+ M R WT+L+ G + +E
Sbjct: 245 VEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKE 304
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP--KQDFKDNVRV--CN 201
ALE F +M+ + P +T++ VL C++ + G RY K+D+ + R+
Sbjct: 305 ALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGF---RYFDRMKEDYGISPRIEHLG 361
Query: 202 TLMDVYSRFGCIEFA 216
++D+ R G +E A
Sbjct: 362 CMVDLLGRAGRVEEA 376
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 144/249 (57%), Gaps = 23/249 (9%)
Query: 59 GCILEAALEFTRMRLYGTNPSHITFVTLLSGCA--DFPSNNVMVSTALLDMYAKFGRMDL 116
GC++ A F +M N S +++ T++ A D P + + F RM++
Sbjct: 124 GCLVSARKVFDKM----VNKSVVSWATMIGAYAQWDLPHEAIKL----------FRRMEI 169
Query: 117 ATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR 176
A+ +F W ++NG V+ +EEAL F MQ+SGV+ D +T+ S+L C ++
Sbjct: 170 ASNLF-------CWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLG 222
Query: 177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIV 236
L +G W+H Y+ K+ + +V + L+D+Y++ G IE A +VFQ M ++ +++W ++IV
Sbjct: 223 ALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIV 282
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
G A+ G +ALE F+ MQ K D ++F G L ACSHAGL+ +G+ YF+ M Y +
Sbjct: 283 GLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQ 342
Query: 297 PQIEHHGCI 305
P IEH+GC+
Sbjct: 343 PSIEHYGCM 351
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 41/224 (18%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVKRDYFEEALEYF 150
F ++ ++ AL D G + A +VF+ + +T +++ G+ ++ +A+ ++
Sbjct: 11 FSASKIVAFCALHDS----GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFY 66
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
++M + G++PD T S+ C L G +H + K F + + NTLM++YS
Sbjct: 67 QLMMLQGLDPDRFTFPSLFKSCG---VLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNC 123
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFA---------------------------VNGF 243
GC+ AR+VF +M +++VSW ++I +A +NG
Sbjct: 124 GCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGH 183
Query: 244 V-----GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
V EAL FN MQ K D+V+ L AC+H G +E G
Sbjct: 184 VEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG 227
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 152/283 (53%), Gaps = 19/283 (6%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC----------- 90
+ + W + I+ + ++G E F M +T +++ + C
Sbjct: 234 VKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQW 293
Query: 91 -ADFPSNNVMV-----STALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
A++ M+ +TAL+DMYAK G +D A +FD M D W+A+++G+ + D
Sbjct: 294 IAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDR 353
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
EAL F MQ + V P+ +T++SVL+ CA + L G W+H Y+ ++D V +
Sbjct: 354 CREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTA 413
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D Y++ GCI+ A + F+ M R +W ++I G A NG EALE F+ M + +
Sbjct: 414 LVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPT 473
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+V+F G L ACSH L+E+G ++F M + Y + P+IEH+GC+
Sbjct: 474 DVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCM 516
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 100/185 (54%), Gaps = 2/185 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
V +L+ MYA G + A V+F + +G W A++ G+VK ++E +E F+ M
Sbjct: 208 VLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVR 267
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
D +T++SV C + +G W+ Y ++ + + L+D+Y++ G ++ AR
Sbjct: 268 APFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKAR 327
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
++F RMH R +V+W+++I G+ + EAL FN MQ ++V+ L+AC+ G
Sbjct: 328 RLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLG 387
Query: 278 LIEDG 282
+E G
Sbjct: 388 ALETG 392
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Query: 125 RGCDFWTALLNGFVKRDYFEEALEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
R + L+ F++ + E+AL F ++ + V PD T+ + + C+ + L +G
Sbjct: 133 RSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRG 192
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+ Y K+ F + V N+L+ +Y+ G + A +F + + +++WN++I G+ NG
Sbjct: 193 VQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGD 252
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
E +E F M + DEV+ TAC G
Sbjct: 253 WKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLG 286
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 154/287 (53%), Gaps = 20/287 (6%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-- 95
K + V W + I+ + + A F + G P+ TF ++L+ C S
Sbjct: 472 EKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLE 531
Query: 96 ---------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFV 138
+++ VS AL+ M+ G + A +F+ M D W ++ GFV
Sbjct: 532 LGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV 591
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ + A +YF++MQ SG++PD +T +LN CA+ L G +H + + F +V
Sbjct: 592 QHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVL 651
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V L+ +Y++ G IE A QVF ++ K+ + SW S+I G+A +G EALE F MQ+
Sbjct: 652 VGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEG 711
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
K D ++F GAL+AC+HAGLIE+GL +F MK+ + + P++EH+GC+
Sbjct: 712 VKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCM 757
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 133/266 (50%), Gaps = 22/266 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WTS I+ R G +A F RM G P + FV+LL C + P
Sbjct: 278 VTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRAC-NHPEALEQGKKVHA 336
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ V TA+L MY K G M+ A VFD+++G + WTA++ GF + +E
Sbjct: 337 RMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDE 396
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A +F M SG+EP+ +T +S+L C++ L G + ++ + + + RV L+
Sbjct: 397 AFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLS 456
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G ++ A +VF+++ K+ +V+WN++I + + AL F + K K + +
Sbjct: 457 MYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSST 516
Query: 266 FTGALTACSHAGLIEDG-LQYFDIMK 290
FT L C + +E G +F IMK
Sbjct: 517 FTSILNVCKSSDSLELGKWVHFLIMK 542
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 126/259 (48%), Gaps = 19/259 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W + + + G EA +M P TFV++L+ CAD +
Sbjct: 179 WNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLIL 238
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
++ V TAL++M+ K G + AT VFD + D WT+++ G + F++A
Sbjct: 239 KAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACN 298
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F+ M+ GV+PD + +S+L C + L G +H + + + + V ++ +Y+
Sbjct: 299 LFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYT 358
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G +E A +VF + R +VSW ++I GFA +G + EA +FN M + + + V+F
Sbjct: 359 KCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMS 418
Query: 269 ALTACSHAGLIEDGLQYFD 287
L ACS ++ G Q D
Sbjct: 419 ILGACSSPSALKRGQQIQD 437
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 105/198 (53%), Gaps = 2/198 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
++ + L++MYAK G A +FD MR D W LL G+V+ +EEA + M
Sbjct: 144 DIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V+PD T +S+LN CA+ R + G ++ + K + ++ V L++++ + G I
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIG 263
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +VF + R LV+W S+I G A +G +A F M++ + D+V+F L AC+
Sbjct: 264 DATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACN 323
Query: 275 HAGLIEDGLQYFDIMKKI 292
H +E G + MK++
Sbjct: 324 HPEALEQGKKVHARMKEV 341
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 90/173 (52%)
Query: 119 VVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL 178
VVF ++ A+LN K F EA++ + S ++ T ++L +C + L
Sbjct: 67 VVFADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNL 126
Query: 179 GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF 238
G G ++ ++ K + ++ + NTL+++Y++ G A+Q+F M ++ + SWN ++ G+
Sbjct: 127 GDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGY 186
Query: 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+G EA + M + K D+ +F L AC+ A ++ G + ++++ K
Sbjct: 187 VQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK 239
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 23/200 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + I+ + G A F M+ G P ITF LL+ CA +
Sbjct: 581 VSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHAL 640
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+V+V T L+ MY K G ++ A VF + + WT+++ G+ + +EA
Sbjct: 641 ITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEA 700
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN--TLM 204
LE F MQ GV+PD++T + L+ CA+ + GL H + ++F R+ + ++
Sbjct: 701 LELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGL--HHFQSMKEFNIEPRMEHYGCMV 758
Query: 205 DVYSRFGCIEFARQVFQRMH 224
D++ R G + A + +M
Sbjct: 759 DLFGRAGLLNEAVEFIIKMQ 778
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 156/318 (49%), Gaps = 50/318 (15%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN 97
+KS + V W S I+ + G +EA + M P+ IT + ++S C+ N
Sbjct: 217 NKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLN 276
Query: 98 -----------------VMVSTALLDMYAKFGRMDLATVVFDVM---------------- 124
+ ++ AL+DMY K G + A V+FD M
Sbjct: 277 LGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYA 336
Query: 125 -----------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
+ W A+++G V+ +EAL F MQI +EPD +T+++
Sbjct: 337 RFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVN 396
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
L+ C+ + L +G+W+H Y+ + +V + L+D+Y++ G I A QVF+ + +R
Sbjct: 397 CLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRN 456
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
++W ++I G A++G +AL YF+ M DE++F G L+AC H GL+E+G +YF
Sbjct: 457 CLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFS 516
Query: 288 IMKKIYRVSPQIEHHGCI 305
M + VSP+++H+ C+
Sbjct: 517 EMSSKFNVSPKLKHYSCM 534
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 51/287 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLLSGCADFPSN---------- 96
W ++I + SG I + + RM L GT P + T+ LL GC S+
Sbjct: 125 WNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHV 184
Query: 97 -------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEAL 147
++ V A + M G + +A VF+ R D W +++ G VKR EA+
Sbjct: 185 LKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAI 244
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
+ ++ M+ V P+ +T+I +++ C+ V+ L +G H Y+ + + + + N LMD+Y
Sbjct: 245 KIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMY 304
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG---------------------- 245
+ G + AR +F M ++TLVSW ++++G+A GF+
Sbjct: 305 VKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIIS 364
Query: 246 ---------EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
EAL F+ MQ + D+V+ L+ACS G ++ G+
Sbjct: 365 GCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGI 411
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 1/163 (0%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
W A + G+V+ E ++ M + G ++PD T +L C + +GL + +V
Sbjct: 125 WNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHV 184
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K F+ ++ V N + + G + A VF + R LV+WNS+I G G EA+
Sbjct: 185 LKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAI 244
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+ + M+ + +E++ G +++CS + G ++ +K+
Sbjct: 245 KIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKE 287
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 155/282 (54%), Gaps = 22/282 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFPS-------- 95
V W + I+ + R G +L++ F M + P+ T + L+ C + +
Sbjct: 171 VVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIH 230
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
V + AL+++Y K G +D A +FD + + W +L+ G+ +
Sbjct: 231 GYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSL 290
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
E +E R M +S ++PD T+ VL+ CA + +G W+HR+ K+ D V + L
Sbjct: 291 NEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWD-VFIGTAL 349
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G I AR+VF +M++R + +WN+I+ G+A +G A+E F+ M++ + D
Sbjct: 350 IDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDS 409
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++F L AC+H+GL+E+G QYFD+M + Y++ P++EH+GC+
Sbjct: 410 ITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCM 451
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 30/223 (13%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN------- 97
TV W S I +C+ G + E M L P T +LS CA + N
Sbjct: 274 TVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHR 333
Query: 98 ---------VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
V + TAL+DMYAK G + A VFD M R W A+L+G+ E A
Sbjct: 334 FAEKKGIWDVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESA 393
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-----LWMHRY-VPKQDFKDNVRVC 200
+E F M+ SG PD +T ++VL+ CA+ + G L + Y +P + V
Sbjct: 394 IELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPR-----VEHY 448
Query: 201 NTLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNG 242
++D+ R G ++ AR++ + M + +V W +++ +++G
Sbjct: 449 GCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHG 491
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 81/178 (45%), Gaps = 4/178 (2%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQI-S 156
+ T +++ + +D AT VF+ + D + A++ + A+ + M+
Sbjct: 40 IITKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQ 99
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
+ D T V CA+ + G +H + + ++ + + ++L++ Y G I A
Sbjct: 100 NILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNA 159
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALTAC 273
+QVF + +V WN++I G+A G V ++ F M + + +E + G + AC
Sbjct: 160 QQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVAC 217
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 156/318 (49%), Gaps = 50/318 (15%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN 97
+KS + V W S I+ + G +EA + M P+ IT + ++S C+ N
Sbjct: 217 NKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLN 276
Query: 98 -----------------VMVSTALLDMYAKFGRMDLATVVFDVM---------------- 124
+ ++ AL+DMY K G + A V+FD M
Sbjct: 277 LGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYA 336
Query: 125 -----------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
+ W A+++G V+ +EAL F MQI +EPD +T+++
Sbjct: 337 RFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVN 396
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
L+ C+ + L +G+W+H Y+ + +V + L+D+Y++ G I A QVF+ + +R
Sbjct: 397 CLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRN 456
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
++W ++I G A++G +AL YF+ M DE++F G L+AC H GL+E+G +YF
Sbjct: 457 CLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFS 516
Query: 288 IMKKIYRVSPQIEHHGCI 305
M + VSP+++H+ C+
Sbjct: 517 EMSSKFNVSPKLKHYSCM 534
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 51/287 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLLSGCADFPSN---------- 96
W ++I + SG I + + RM L GT P + T+ LL GC S+
Sbjct: 125 WNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHV 184
Query: 97 -------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEAL 147
++ V A + M G + +A VF+ R D W +++ G VKR EA+
Sbjct: 185 LKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAI 244
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
+ ++ M+ V P+ +T+I +++ C+ V+ L +G H Y+ + + + + N LMD+Y
Sbjct: 245 KIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMY 304
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG---------------------- 245
+ G + AR +F M ++TLVSW ++++G+A GF+
Sbjct: 305 VKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIIS 364
Query: 246 ---------EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
EAL F+ MQ + D+V+ L+ACS G ++ G+
Sbjct: 365 GCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGI 411
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 1/163 (0%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
W A + G+V+ E ++ M + G ++PD T +L C + +GL + +V
Sbjct: 125 WNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHV 184
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K F+ ++ V N + + G + A VF + R LV+WNS+I G G EA+
Sbjct: 185 LKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAI 244
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+ + M+ + +E++ G +++CS + G ++ +K+
Sbjct: 245 KIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKE 287
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 154/287 (53%), Gaps = 20/287 (6%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-- 95
K + V W + I+ + + A F + G P+ TF ++L+ C S
Sbjct: 472 EKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLE 531
Query: 96 ---------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFV 138
+++ VS AL+ M+ G + A +F+ M D W ++ GFV
Sbjct: 532 LGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV 591
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ + A +YF++MQ SG++PD +T +LN CA+ L G +H + + F +V
Sbjct: 592 QHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVL 651
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V L+ +Y++ G IE A QVF ++ K+ + SW S+I G+A +G EALE F MQ+
Sbjct: 652 VGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEG 711
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
K D ++F GAL+AC+HAGLIE+GL +F MK+ + + P++EH+GC+
Sbjct: 712 VKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCM 757
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 133/266 (50%), Gaps = 22/266 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WTS I+ R G +A F RM G P + FV+LL C + P
Sbjct: 278 VTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRAC-NHPEALEQGKKVHA 336
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ V TA+L MY K G M+ A VFD+++G + WTA++ GF + +E
Sbjct: 337 RMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDE 396
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A +F M SG+EP+ +T +S+L C++ L G + ++ + + + RV L+
Sbjct: 397 AFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLS 456
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G ++ A +VF+++ K+ +V+WN++I + + AL F + K K + +
Sbjct: 457 MYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSST 516
Query: 266 FTGALTACSHAGLIEDG-LQYFDIMK 290
FT L C + +E G +F IMK
Sbjct: 517 FTSILNVCKSSDSLELGKWVHFLIMK 542
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 126/259 (48%), Gaps = 19/259 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W + + + G EA +M P TFV++L+ CAD +
Sbjct: 179 WNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLIL 238
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
++ V TAL++M+ K G + AT VFD + D WT+++ G + F++A
Sbjct: 239 KAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACN 298
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F+ M+ GV+PD + +S+L C + L G +H + + + + V ++ +Y+
Sbjct: 299 LFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYT 358
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G +E A +VF + R +VSW ++I GFA +G + EA +FN M + + + V+F
Sbjct: 359 KCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMS 418
Query: 269 ALTACSHAGLIEDGLQYFD 287
L ACS ++ G Q D
Sbjct: 419 ILGACSSPSALKRGQQIQD 437
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 105/198 (53%), Gaps = 2/198 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
++ + L++MYAK G A +FD MR D W LL G+V+ +EEA + M
Sbjct: 144 DIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V+PD T +S+LN CA+ R + G ++ + K + ++ V L++++ + G I
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIG 263
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +VF + R LV+W S+I G A +G +A F M++ + D+V+F L AC+
Sbjct: 264 DATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACN 323
Query: 275 HAGLIEDGLQYFDIMKKI 292
H +E G + MK++
Sbjct: 324 HPEALEQGKKVHARMKEV 341
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 90/173 (52%)
Query: 119 VVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL 178
VVF ++ A+LN K F EA++ + S ++ T ++L +C + L
Sbjct: 67 VVFADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNL 126
Query: 179 GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF 238
G G ++ ++ K + ++ + NTL+++Y++ G A+Q+F M ++ + SWN ++ G+
Sbjct: 127 GDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGY 186
Query: 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+G EA + M + K D+ +F L AC+ A ++ G + ++++ K
Sbjct: 187 VQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK 239
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 23/200 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + I+ + G A F M+ G P ITF LL+ CA +
Sbjct: 581 VSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHAL 640
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+V+V T L+ MY K G ++ A VF + + WT+++ G+ + +EA
Sbjct: 641 ITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEA 700
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN--TLM 204
LE F MQ GV+PD++T + L+ CA+ + GL H + ++F R+ + ++
Sbjct: 701 LELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGL--HHFQSMKEFNIEPRMEHYGCMV 758
Query: 205 DVYSRFGCIEFARQVFQRMH 224
D++ R G + A + +M
Sbjct: 759 DLFGRAGLLNEAVEFIIKMQ 778
>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
Length = 1280
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 138/263 (52%), Gaps = 24/263 (9%)
Query: 65 ALEFTRMRLYGTNPSHITFVTLLSGCADF------------PSNN-----VMVSTALLDM 107
ALE R RL P T+ L+ CA + N V V +L+ +
Sbjct: 791 ALELHRRRL--ALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHL 848
Query: 108 YAKFGRMDLATVVFDVM--RGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
Y G + A VFD M RG + W ++LN F E L F M PD
Sbjct: 849 YGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGF 908
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
TI+SVL CA L +G +H YV K +N V N L+D+Y++ G + AR++F+ M
Sbjct: 909 TIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEM 968
Query: 224 H-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
RT+VSW S+IVG A NGF EALE F+LM++ E++ G L ACSH GL++DG
Sbjct: 969 GLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDG 1028
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
+YFD MK+ Y +SP+IEH GC+
Sbjct: 1029 FRYFDRMKEDYGISPRIEHLGCM 1051
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 27/195 (13%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S ++ +G E F M P T V++L+ CA+F +
Sbjct: 873 VSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVY 932
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEE 145
N VS AL+D+YAK G ++ A +F+ M R WT+L+ G + +E
Sbjct: 933 VEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKE 992
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP--KQDFKDNVRV--CN 201
ALE F +M+ + P +T++ VL C++ + G RY K+D+ + R+
Sbjct: 993 ALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGF---RYFDRMKEDYGISPRIEHLG 1049
Query: 202 TLMDVYSRFGCIEFA 216
++D+ R G +E A
Sbjct: 1050 CMVDLLGRAGRVEEA 1064
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 154/312 (49%), Gaps = 50/312 (16%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV----- 98
+ V WT+ +S + + G E+ F +MR P + VT+LS C ++
Sbjct: 332 SLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVH 391
Query: 99 ------------MVSTALLDMYAKFGRMDLATVVFD----------------------VM 124
+ ALLD+YAK G++D A F+ V
Sbjct: 392 AFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVD 451
Query: 125 RGCDF-----------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173
+ DF W ++N +VK D F E+ E F MQ S V+PD T+IS+L+ CA
Sbjct: 452 KARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCA 511
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
V L G+W++ Y+ K + + + L+D+Y + GC+E A ++F ++ ++ + W +
Sbjct: 512 KVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTA 571
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
++ +A+ G EA++ + M++ K D V+F L ACSH GL+++G +YF+ ++ Y
Sbjct: 572 MMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFY 631
Query: 294 RVSPQIEHHGCI 305
+ P I H+GC+
Sbjct: 632 NIIPTIHHYGCM 643
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 56/305 (18%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-- 95
K T + W + IS + G EA F M + G P IT V+L+S CA
Sbjct: 192 EKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLE 251
Query: 96 -----------NNVMVSTALL----DMYAKFGRMDLA------------------TVV-- 120
N + + +LL DMY+K G+MD A T+V
Sbjct: 252 MGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSG 311
Query: 121 -------------FDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
FD M R WT +++G+V+ Y+ E+LE F+ M+ V PD + +
Sbjct: 312 YVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVAL 371
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
++VL+ C ++ +G +H ++ + + N L+D+Y++ G ++ A + F+++
Sbjct: 372 VTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPC 431
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
++ SWNS++ GF +G V +A ++FN + + D VS+ + A L + +
Sbjct: 432 KSAASWNSMLDGFCRSGGVDKARDFFN----KIPEKDIVSWNTMVNAYVKHDLFNESFEI 487
Query: 286 FDIMK 290
F M+
Sbjct: 488 FCKMQ 492
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 134/301 (44%), Gaps = 59/301 (19%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-DFP--------- 94
++ W + + + GC E + M G TF L+ C +F
Sbjct: 98 SIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHG 157
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N ++ L+ +Y+K G++ +F+ M D W +++ +V + + E
Sbjct: 158 RILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYRE 217
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL+ F M +SGV PD +T++S+++ CA ++ L +G +H Y+ + N L+D
Sbjct: 218 ALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVD 277
Query: 206 VYSRFG-----------C----------------------IEFARQVFQRMHKRTLVSWN 232
+YS+ G C I+ ARQ+F +M++R+LVSW
Sbjct: 278 MYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWT 337
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
+++ G+ G+ E+LE F M+ DEV+ L+AC H L+ FD+ + +
Sbjct: 338 TMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVH-------LEDFDLGRSV 390
Query: 293 Y 293
+
Sbjct: 391 H 391
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 41/212 (19%), Positives = 87/212 (41%), Gaps = 37/212 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDM 107
WT+ ++ + G LEA + M G P H+TF+ LL+ C S+ +V
Sbjct: 569 WTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAAC----SHGGLVDEG---- 620
Query: 108 YAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
Y F ++ ++++ + +++ + + EE +++ M I EPD S
Sbjct: 621 YKYFNKL---RSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPI---EPDVSIWSS 674
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT-------LMDVYSRFGCIEFARQVF 220
++ C + + + +Q FK + + T L ++Y+ G + +V
Sbjct: 675 LMRACRSHHNVELA--------EQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVR 726
Query: 221 QRMHKR--------TLVSWNSIIVGFAVNGFV 244
++H+ T++ N ++ F + V
Sbjct: 727 TKLHETGVPKQPGFTMIEQNGVVHEFVASNLV 758
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 158/285 (55%), Gaps = 21/285 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + IS + +G EA F M P T VT++S CA S
Sbjct: 228 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 287
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ + AL+D+Y+K G ++ A +F+ + D W L+ G+ +
Sbjct: 288 VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNL 347
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVC 200
++EAL F+ M SG P+ +T++S+L CA++ + IG W+H Y+ K + + +
Sbjct: 348 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 407
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+L+D+Y++ G IE A QVF + ++L SWN++I GFA++G + + F+ M+K +
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQ 467
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSH+G+++ G F M + Y+++P++EH+GC+
Sbjct: 468 PDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCM 512
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 109/191 (57%), Gaps = 2/191 (1%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P +V+ TAL+ YA G ++ A +FD + D W A+++G+ + ++EALE F+
Sbjct: 196 PHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M + V PD T+++V++ CA ++ +G +H ++ F N+++ N L+D+YS+ G
Sbjct: 256 DMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCG 315
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
+E A +F+R+ + ++SWN++I G+ EAL F M + ++V+ L
Sbjct: 316 ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 375
Query: 272 ACSHAGLIEDG 282
AC+H G I+ G
Sbjct: 376 ACAHLGAIDIG 386
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 33/207 (15%)
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + A VF ++ + W + G AL+ + M G+ P+ T V
Sbjct: 81 FEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFV 140
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L CA + G +H +V K ++ V +L+ +Y + G +E A +VF + R +
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDV 200
Query: 229 VS-------------------------------WNSIIVGFAVNGFVGEALEYFNLMQKG 257
VS WN++I G+A G EALE F M K
Sbjct: 201 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 260
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ DE + ++AC+ +G IE G Q
Sbjct: 261 NVRPDESTMVTVVSACAQSGSIELGRQ 287
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 130/212 (61%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+V+ ST ++ Y+ G ++ A VF +R D WTA+++GFV+ + ALE FR M
Sbjct: 210 EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGM 269
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q V P+ TI+ VL+ C+ + L IG W+H Y+ K + + N+ V N L+++YSR G I
Sbjct: 270 QGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSI 329
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ A+ VF M R ++++N++I G ++NG +A+E F +M + V+F G L AC
Sbjct: 330 DEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNAC 389
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH GL++ G + F M + YRV PQIEH+GC+
Sbjct: 390 SHGGLVDFGFEIFHSMARDYRVEPQIEHYGCM 421
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 91/220 (41%), Gaps = 32/220 (14%)
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
LL +K +D A+ +F + +TAL++GFV + EA++ + M + PD
Sbjct: 87 LLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPD 146
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN--VRV--------CNTLMDV----- 206
+ S+L C + L G +H K F N VR+ C L D
Sbjct: 147 NYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFE 206
Query: 207 ---------------YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
YS G +E A VF R+ ++ V W ++I GF N ALE F
Sbjct: 207 EMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAF 266
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
MQ + +E + L+ACS G +E G M+K
Sbjct: 267 RGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 306
>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 975
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 149/277 (53%), Gaps = 19/277 (6%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV--------- 98
W + I H ++G +A + MR G P T +LLS CA S +
Sbjct: 470 WNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSML 529
Query: 99 --------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
+ +L+ +Y + G++ LA + FD M + W ++NGF + ++ +AL+
Sbjct: 530 RNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALD 589
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M S + PD ++II L C+ V L +G +H + K ++ V +L+D+Y+
Sbjct: 590 MFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYA 649
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ GC+E ++ +F R+H + V+WN +I G+ ++G +A+E F MQ F+ D V+F
Sbjct: 650 KCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIA 709
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTAC+HAGL+ +GL+Y M+ ++ + P++EH+ C+
Sbjct: 710 LLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACV 746
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 13/206 (6%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF-RV 152
N+V++ T L+ MY+ + +VF+ R + W ALL+G+++ F +A+ F +
Sbjct: 127 NDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEM 186
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
+ ++ PD T+ V+ C V + +G +H + K +V V N L+ +Y +FG
Sbjct: 187 ISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGF 246
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE------VSF 266
+E A +VF +M +R LVSWNS++ NG E+ F KG+ DE +
Sbjct: 247 VESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLF----KGLLNGDEGLMPDVATM 302
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKI 292
+ C+ G + G+ + + K+
Sbjct: 303 VTVIPLCARQGEVRLGMVFHGLALKL 328
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDV-MRGCDFWTALLNGFVKRDYFEEALEYFRVMQISG- 157
V+++LLDMY+K G + A V+FD + W +++ G+ K F A E R MQ+
Sbjct: 336 VNSSLLDMYSKCGYLCEARVLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDK 395
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSRFGCIEFA 216
V+ + +T+++VL VC +H Y + F + + V N + Y++ G + +A
Sbjct: 396 VKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYA 455
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
VF M + + SWN++I G NGF +AL+ + LM+ + D + L+AC+
Sbjct: 456 EGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACA 513
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 31/269 (11%)
Query: 48 WTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFPS----------- 95
W + +S + R+ +A F M L P + T ++ C
Sbjct: 163 WNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFA 222
Query: 96 ------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEAL 147
++V V AL+ MY KFG ++ A VFD M R W +++ ++ FEE+
Sbjct: 223 LKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESY 282
Query: 148 EYFRVM--QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
F+ + G+ PD T+++V+ +CA + +G+ H K ++V ++L+D
Sbjct: 283 GLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLD 342
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEV 264
+YS+ G + AR +F +++ ++SWNS+I G++ + A E MQ + K +EV
Sbjct: 343 MYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEV 401
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIY 293
+ L C E+ +Q+ +K+I+
Sbjct: 402 TLLNVLPVC------EEEIQFLK-LKEIH 423
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 133/217 (61%), Gaps = 7/217 (3%)
Query: 91 ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
AD S NVM+ D Y K G + A +FDVM G + WT ++ + + EEA+E
Sbjct: 136 ADVVSWNVMI-----DGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIE 190
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
FR MQ+ G+EPD + ++SVL+ C ++ + +G W+HR+V ++ + + N ++D+Y
Sbjct: 191 VFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYV 250
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G ++ A +VF+ M ++++V+W ++I GFA++G EA+E F M+K ++++F
Sbjct: 251 KCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLA 310
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ CSH GL + G YF M Y++ P++EH+GC+
Sbjct: 311 VLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCM 347
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 21/219 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
V WT I + + EA F RM++ G P + +++LS C D
Sbjct: 169 VVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHR 228
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+ + A++DMY K G + A VF+ M + WT ++ GF E
Sbjct: 229 FVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGSE 288
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLM 204
A+E FR M+ V P+ +T ++VL+VC++V +G W + + Q K V ++
Sbjct: 289 AVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMI 348
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
D+ R GC+ AR + Q M K W +++ +G
Sbjct: 349 DLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHG 387
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 151/261 (57%), Gaps = 16/261 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
T W S + ++A + F R+R Y P T ++L C + L
Sbjct: 126 TFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLN-----------L 174
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
LD+ GR+ L VV V G WT+++ G+V+ +EA+ F M+ +GV+ + +T
Sbjct: 175 LDLSN--GRI-LHGVVEKV--GFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVT 229
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
+++VL CA++ L +G+ +H Y + FK NVR+ NTL+D+Y + GC+E A +VF+ M
Sbjct: 230 VVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME 289
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+RT+VSW+++I G A++G EAL F+ M + + + V+F G L ACSH GLI +G +
Sbjct: 290 ERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRR 349
Query: 285 YFDIMKKIYRVSPQIEHHGCI 305
+F M + Y + PQIEH+GC+
Sbjct: 350 FFASMTRDYGIIPQIEHYGCM 370
>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
Length = 568
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 147/287 (51%), Gaps = 31/287 (10%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----- 95
+++T ++ +S SR L AL R+ P T+ LL CA S
Sbjct: 88 SLNTVLRIAASSSRPS-----LALALHARRL----APPDTHTYPPLLQACARLLSLRHGE 138
Query: 96 ------------NNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVK 139
V V +L+ +Y G + A VFD + R W ++LNGF
Sbjct: 139 RIHAEAAKNGLATLVFVKNSLVHLYGACGLFESAHRVFDEIPVGERNLVSWNSMLNGFAA 198
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
E L FR M PD T++SVL A + L +G +H Y+ K +N V
Sbjct: 199 NGRPNEVLTIFREMLDVNFMPDGFTVVSVLTASAEIGALALGRRVHVYLTKVGLVENSHV 258
Query: 200 CNTLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
N L+D+Y++ G +E AR+VF+ M +RT+VSW S+IVG AVNGF EALE F +M++
Sbjct: 259 GNALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVGLAVNGFGKEALELFGIMEREK 318
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
E++ G L ACSH GL++DG YF+ MK+ Y ++P+IEH GC+
Sbjct: 319 LVPTEITMVGVLYACSHCGLVDDGFMYFNRMKEEYNIAPRIEHLGCM 365
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 21/192 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S ++ +G E F M P T V++L+ A+ +
Sbjct: 187 VSWNSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTASAEIGALALGRRVHVY 246
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEE 145
N V AL+D+YAK G ++ A VF+ M R WT+L+ G + +E
Sbjct: 247 LTKVGLVENSHVGNALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVGLAVNGFGKE 306
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-LWMHRYVPKQDFKDNVRVCNTLM 204
ALE F +M+ + P +T++ VL C++ + G ++ +R + + + ++
Sbjct: 307 ALELFGIMEREKLVPTEITMVGVLYACSHCGLVDDGFMYFNRMKEEYNIAPRIEHLGCMV 366
Query: 205 DVYSRFGCIEFA 216
D+ R G ++ A
Sbjct: 367 DLLGRAGKVKEA 378
>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 150/280 (53%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEA-ALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-------- 96
V W++ I + I +A AL + +YG NP+ T T+L CA
Sbjct: 277 VCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHC 336
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ V +L+ MYAK G MD A D M D ++A+++G V+ Y E+
Sbjct: 337 HMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEK 396
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL FR MQ SG+ P T+I++L C+++ L G H Y + F ++ +CN ++D
Sbjct: 397 ALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIID 456
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ G I +R++F RM R ++SWN++I+G+ ++G EAL F +Q K D+V+
Sbjct: 457 MYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVT 516
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH+GL+ +G +F M + + + P++ H+ C+
Sbjct: 517 LIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICM 556
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 21/232 (9%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
+ V W I + SG ++ + M G P++ TF LL C+
Sbjct: 71 SVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIH 130
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDY 142
S ++ VSTALL MYAK G + A +F+ + D W A++ F
Sbjct: 131 THAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHAL 190
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+ + MQ +GV P+ T++S+L L G +H Y + F DNV +
Sbjct: 191 HAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTA 250
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
L+D+Y++ + +AR++F ++K+ V W+++I G+ ++ + +AL ++ M
Sbjct: 251 LLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDM 302
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/192 (19%), Positives = 81/192 (42%), Gaps = 4/192 (2%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
S++ +T L + + LA VFD + W ++ + F++++ +
Sbjct: 38 SDSDAAATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLH 97
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M GV P T +L C++++ L +G +H + ++ V L+ +Y++ G
Sbjct: 98 MLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGH 157
Query: 213 IEFARQVFQRM--HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
+ A+ +F + R +V+WN++I F+ + + + MQ+ + + L
Sbjct: 158 LYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSIL 217
Query: 271 TACSHAGLIEDG 282
A + G
Sbjct: 218 PTIGQANALHQG 229
>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Brachypodium distachyon]
Length = 802
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 151/276 (54%), Gaps = 20/276 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V WTS I+ + ++ EA M P+ TF +LL + +
Sbjct: 118 VSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQIHAL 177
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+V V +ALLDMYA+ G+MD+AT VFD + + W AL++GF ++ E A
Sbjct: 178 AVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETA 237
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F MQ +G E + T S+ + A + L G W+H ++ K K V NT++D+
Sbjct: 238 LMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDM 297
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G + AR+VF+R+ + LV+WNS++ FA G EA+ +F M+K +++SF
Sbjct: 298 YAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISF 357
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
LTACSH GL+++G YFD++K+ Y + P+IEH+
Sbjct: 358 LCILTACSHGGLVKEGKHYFDMIKE-YNLEPEIEHY 392
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 2/190 (1%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+ + + +L+ +Y K G + A VFD MR D WT+L+ G+ + D EA+
Sbjct: 83 AGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPG 142
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M +P+ T S+L GIG +H K D+ ++V V + L+D+Y+R G
Sbjct: 143 MLKGRFKPNGFTFASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGK 202
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ A VF ++ + VSWN++I GFA G AL F MQ+ F+ +++ +A
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSA 262
Query: 273 CSHAGLIEDG 282
+ G +E G
Sbjct: 263 LAGIGALEQG 272
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
+ + CA + L +H ++ F + + N+L+ +Y + G + A +VF +M +
Sbjct: 56 AFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNK 115
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+VSW S+I G+A N EA+ M KG FK + +F L A
Sbjct: 116 DMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA 161
>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata]
gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]
Length = 1251
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 150/285 (52%), Gaps = 26/285 (9%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T V W S G +A + M P TF+ L + C + +
Sbjct: 816 TVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPDLSTFINLAASCQNPQTLTQGRLIH 875
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
++ + MY+K G A ++FD+M R C WT +++G+ ++ +
Sbjct: 876 SHAIHLGTDQDIEAINTFISMYSKSGDSCSARLLFDIMPSRTCVSWTVMISGYAEKGDMD 935
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF----KDNVRVC 200
EAL F M +GV PD +T++S+++ C +L IG W+ + D KDNV VC
Sbjct: 936 EALALFHAMAKTGVNPDLVTLLSLISGCGKFGSLEIGKWID---GRADMYGCKKDNVMVC 992
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N L+D+YS+ G I+ AR +F ++T+V+W ++I G+A+NG EA+E F+ M +K
Sbjct: 993 NALIDMYSKCGSIDEARDIFDNTSEKTMVTWTTMIAGYALNGIFLEAMELFSKMIDLDYK 1052
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ ++F L AC+H+G +E G +YF IMK++Y +SP ++H+ C+
Sbjct: 1053 PNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCM 1097
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 116/242 (47%), Gaps = 21/242 (8%)
Query: 62 LEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTAL 104
+E+ L F M+ G P++ TF + CA ++V V TA
Sbjct: 630 VESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVHTHLIKSPFWSDVFVGTAT 689
Query: 105 LDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+DM+ K +D A VF+ M R W A+L+GF + + ++ FR M++ + PD
Sbjct: 690 VDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTDKVFSLFREMRLDEIPPDS 749
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
+T+++++ + ++L + MH + + V NT + Y + G ++ A+ VF+
Sbjct: 750 VTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNTWISAYGKCGDLDSAKLVFEA 809
Query: 223 MHK--RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
+ + RT+VSWNS+ FAV G +A ++ LM + FK D +F +C + +
Sbjct: 810 IDRGDRTVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPDLSTFINLAASCQNPQTLT 869
Query: 281 DG 282
G
Sbjct: 870 QG 871
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 4/169 (2%)
Query: 121 FDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI 180
F + + W + V R+ E+L FR M+ G EP+ T V CA + +G
Sbjct: 607 FPGLSSVNAWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGY 666
Query: 181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAV 240
+H ++ K F +V V +D++ + +++A +VF+RM R +WN+++ GF
Sbjct: 667 CEMVHTHLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQ 726
Query: 241 NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
+G + F M+ D V+ + + S E L+ +M
Sbjct: 727 SGHTDKVFSLFREMRLDEIPPDSVTVMTLIQSAS----FEKSLKLLKVM 771
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 14/138 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
T V WT+ I+ + +G LEA F++M P+HITF+ +L CA S +
Sbjct: 1019 TMVTWTTMIAGYALNGIFLEAMELFSKMIDLDYKPNHITFLAVLQACAH--------SGS 1070
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
L + F M V+++ G D ++ +++ ++ +EALE M +PD
Sbjct: 1071 LEKGWEYFHIM---KQVYNISPGLDHYSCMVDLLGRKGKLDEALELIHNM---SAKPDAG 1124
Query: 164 TIISVLNVCANVRTLGIG 181
++L+ C R + I
Sbjct: 1125 IWGALLSACKIHRNVKIA 1142
>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial [Vitis vinifera]
gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 130/212 (61%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVM 153
+++ V L+ MY+K G + A +FD M G WTA++ G+ ++ +EA+ F M
Sbjct: 291 SDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAM 350
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ G +PD +TIIS+++ C L +G W+ Y KDN+ VCN L+DVY++ G +
Sbjct: 351 EAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSM 410
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ AR++F M +++LVSW ++I G A+NG EAL F M + K + ++F L AC
Sbjct: 411 DNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQAC 470
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+HAG +E G + F++M K+Y+++P ++H+ C+
Sbjct: 471 NHAGFLEKGWECFNLMTKVYKINPGLDHYSCM 502
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 119/252 (47%), Gaps = 21/252 (8%)
Query: 32 SIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA 91
+ Q+ N S + T QW SSI+ G +A L F +M+ G P+++TF ++ C+
Sbjct: 6 ATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACS 65
Query: 92 DFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTA 132
+ ++ V T+++DMY K ++ A +F M R W +
Sbjct: 66 KLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNS 125
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
++ GF + + + + F M I G+ D +T+I + + +++ L + +H + K
Sbjct: 126 MILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIG 185
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEY 250
+V V NT + Y++ G A VF + K +T VSWNS+I G+A +A+ +
Sbjct: 186 IDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGF 245
Query: 251 FNLMQKGVFKTD 262
F M G F+ D
Sbjct: 246 FKKMLCGGFRAD 257
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 75/139 (53%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W + + V + Y +AL FR M+ +G+EP+ LT SV C+ + L +H +V
Sbjct: 22 WNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVV 81
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
K F+ ++ V +++D+Y + + FA +F RM KR + SWNS+I+GFA GFV +
Sbjct: 82 KSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVS 141
Query: 250 YFNLMQKGVFKTDEVSFTG 268
F M + D V+ G
Sbjct: 142 LFCEMGIEGIRADSVTVIG 160
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 141/245 (57%), Gaps = 33/245 (13%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK-------RDYFE 144
P +N ++ +L++MY K +D A VF+ M R W L++G V+ R FE
Sbjct: 122 PKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFE 181
Query: 145 E------------------------ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI 180
E ALE+FR MQ+ +E D ++++SVL CA + L +
Sbjct: 182 ELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGALEL 241
Query: 181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAV 240
G W+H Y K F ++ VCN L++VY++ G ++ R++F +M++R ++SW+++IVG A
Sbjct: 242 GKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLAN 301
Query: 241 NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIE 300
+G EA+E F MQK + + ++F G L+AC+HAGL+ +GL YF+ M++ + P +E
Sbjct: 302 HGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNIEPGVE 361
Query: 301 HHGCI 305
H+GC+
Sbjct: 362 HYGCL 366
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 20/200 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T WT+ +S + R GC A F RM++ I+ V++L CA +
Sbjct: 187 TIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGALELGKWIH 246
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++ V AL+++YAK G MD +F M D W+ ++ G
Sbjct: 247 IYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAR 306
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDNVRVCNTL 203
EA+E F+ MQ + VEP+ +T + +L+ CA+ L GL + + D + V L
Sbjct: 307 EAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNIEPGVEHYGCL 366
Query: 204 MDVYSRFGCIEFARQVFQRM 223
+++ G ++ A ++ ++M
Sbjct: 367 VNLLGLSGRLDQALELIKKM 386
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 31/154 (20%)
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD T V+ CA + +G +H + K K N + N+L+++Y + ++ A +V
Sbjct: 89 PDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRV 148
Query: 220 FQRMHKRTLVSWN-------------------------------SIIVGFAVNGFVGEAL 248
F+ M +R VSWN +I+ G+A G AL
Sbjct: 149 FEEMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVAL 208
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
E+F MQ + DE+S L AC+ G +E G
Sbjct: 209 EFFRRMQMVDIELDEISLVSVLPACAQLGALELG 242
>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
Length = 642
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 151/280 (53%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V W + I+ + R G +A F +M +T + +L CA +
Sbjct: 74 VSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHAL 133
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N + ++L+ MYAK G ++ A VF+ M R WT+++ G + F+EA
Sbjct: 134 VVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEA 193
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
++ FR MQI+GV+ D TI +V++ C + L +G ++H Y + V N+L+D+
Sbjct: 194 VDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDM 253
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVS 265
YS+ G + A Q+F+ + KR + +W +I+GFA+NG EAL+ F M+ + +EV
Sbjct: 254 YSKCGDVNKAYQIFRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVI 313
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G LTACSH GL+E G +F M K+Y + P+IEH+GC+
Sbjct: 314 FLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCM 353
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R 226
++ A V +L +G H K + V N L+++YS AR V +
Sbjct: 12 ISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWAS 71
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+VSWN+II G+ G +AL+ F+ M K + DEV+ L AC+ G ++ G
Sbjct: 72 DVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVG 127
>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 579
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 155/279 (55%), Gaps = 20/279 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLY-GTNPSHITFVTLLSGCADFP-------- 94
+ WT+ IS + + I + ALE + L G P+ T+ ++L C
Sbjct: 78 NVISWTTMISAYSKCK-IHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDVRMLHCG 136
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
++V V +AL+D++AK G + A VFD M D W +++ GF + + A
Sbjct: 137 IIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVA 196
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F+ M+ +G + T+ SVL C + L +G+ H ++ K D ++ + N L+D+
Sbjct: 197 LELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLILNNALVDM 254
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G +E AR+VF +M +R +++W+++I G A NG+ EAL+ F LM+ K + ++
Sbjct: 255 YCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITI 314
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSHAGL+EDG YF MKK+Y ++P EH+GC+
Sbjct: 315 VGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCM 353
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 97/186 (52%), Gaps = 11/186 (5%)
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L++MY KF ++ A +FD M R WT +++ + K ++ALE +M GV P+
Sbjct: 54 LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPN 113
Query: 162 YLTIISVLNVC---ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
T SVL C ++VR L G + K+ + +V V + L+DV+++ G E A
Sbjct: 114 VYTYSSVLRACNGMSDVRMLHCG------IIKEGLESDVYVRSALIDVFAKLGEPEDALS 167
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF M + WNSII GFA N ALE F M++ F ++ + T L AC+ L
Sbjct: 168 VFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLAL 227
Query: 279 IEDGLQ 284
+E G+Q
Sbjct: 228 LELGMQ 233
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 71/140 (50%), Gaps = 8/140 (5%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
+Q G+ D T ++ C + R + G + R++ + + + N L+++Y +F
Sbjct: 4 LQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNL 63
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+ A Q+F +M +R ++SW ++I ++ +ALE LM + + + +++ L A
Sbjct: 64 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRA 123
Query: 273 CS--------HAGLIEDGLQ 284
C+ H G+I++GL+
Sbjct: 124 CNGMSDVRMLHCGIIKEGLE 143
>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 602
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 142/266 (53%), Gaps = 22/266 (8%)
Query: 62 LEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------------SNNVMVSTA 103
L AA F M P+ TF LL CA P + + VS
Sbjct: 108 LRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNT 167
Query: 104 LLDMYAKFGR--MDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
L+ MY+ FG + A VFD M W+A++ G+V+ +A++ FR MQ +GV+
Sbjct: 168 LIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQ 227
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
D +T+I VL ++ L + W+ R+V ++ +V +CN L+D ++ G ++ A V
Sbjct: 228 ADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAV 287
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F+ M +R++VSW S+I A+ G EA+ F M+ D+V+F G LTACSHAG++
Sbjct: 288 FEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMV 347
Query: 280 EDGLQYFDIMKKIYRVSPQIEHHGCI 305
++G YFD MK Y + P+IEH+GC+
Sbjct: 348 DEGCGYFDAMKVEYGIEPKIEHYGCM 373
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 21/221 (9%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
++ V W++ I + R G +A F M+ G +T + +L+ D +
Sbjct: 193 ESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWV 252
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
+V + AL+D AK G +D A VF+ M R WT++++
Sbjct: 253 RRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRG 312
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNT 202
+EA+ F M+++GV PD + I VL C++ + G + + + +
Sbjct: 313 KEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGC 372
Query: 203 LMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
++D++ R G +E A + + M + V W S++ +G
Sbjct: 373 MVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHG 413
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 157/297 (52%), Gaps = 37/297 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ W++ I+ + + GC EA F +M L G+ P+ +T ++LLS CA +
Sbjct: 361 ITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAY 420
Query: 96 -------------------NNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTA 132
++MV AL+DMY+K A +FD + R WT
Sbjct: 421 SLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTV 480
Query: 133 LLNGFVKRDYFEEALEYFRVM--QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
++ G+ + +AL+ F M + V P+ TI +L CA++ L +G +H YV +
Sbjct: 481 MIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTR 540
Query: 191 Q-DFKDNVR-VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
+++ +V V N L+D+YS+ G ++ AR VF M KR VSW S++ G+ ++G EAL
Sbjct: 541 HHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEAL 600
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ F+ MQK F D++SF L ACSH+G+++ GL YFDIM++ Y V EH+ C+
Sbjct: 601 DIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACV 657
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 126/277 (45%), Gaps = 28/277 (10%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----- 95
T V W + H + G + A RM GT P H T L C + PS
Sbjct: 110 TPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGR 169
Query: 96 ------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCD---FWTALLNGFV 138
+NV V AL+ MY++ G ++ A++VFD + +G D W +++ V
Sbjct: 170 ALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHV 229
Query: 139 KRDYFEEALEYFRVMQI------SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
K ALE F M + + D ++I+++L CA+++ L +H Y +
Sbjct: 230 KGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNG 289
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
+ VCN L+D Y++ G + A +VF M + +VSWN+++ G+ +G G A E F
Sbjct: 290 TFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFE 349
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
M+K D ++++ + + G ++ L F M
Sbjct: 350 NMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM 386
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 146/339 (43%), Gaps = 78/339 (23%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALE-FTRMRLY----GTNPSH--ITFVTLLSGC 90
++ ID + W S ++ H + G ALE F+ M + TN I+ V +L C
Sbjct: 211 TRKGIDDVISWNSIVAAHVK-GSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPAC 269
Query: 91 ADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMR-------- 125
A + + V AL+D YAK G M+ A VF+VM
Sbjct: 270 ASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWN 329
Query: 126 ------------GCDF-----------------WTALLNGFVKRDYFEEALEYFRVMQIS 156
G F W+A++ G+ +R +EAL+ F+ M +
Sbjct: 330 AMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILD 389
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ------------DFKDNVRVCNTLM 204
G EP+ +TIIS+L+ CA++ L G+ +H Y K+ +++ V N L+
Sbjct: 390 GSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALI 449
Query: 205 DVYSRFGCIEFARQVFQRM--HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
D+YS+ + AR +F + +R +V+W +I G+A G +AL+ F+ M +
Sbjct: 450 DMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVA 509
Query: 263 EVSFTGA--LTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299
++T + L AC+H + G Q + + + P +
Sbjct: 510 PNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSV 548
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 139/260 (53%), Gaps = 24/260 (9%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDM 107
WT+ I H G ++ A F M P +++ TA+L
Sbjct: 96 WTAIIHGHALRGDVVSAQQLFDTM----------------------PEKSLVSLTAMLTC 133
Query: 108 YAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
YAK G +D A V+FD M D W +++G+ + EAL FR M + +P+ +T+
Sbjct: 134 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 193
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
+SVL+ C + L G W+H Y+ + NV V L+D+YS+ G +E AR VF ++
Sbjct: 194 LSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDD 253
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
+ +V+WNS+IVG+A++GF EAL+ F M + ++F G L+AC H+G + +G
Sbjct: 254 KDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDI 313
Query: 286 FDIMKKIYRVSPQIEHHGCI 305
F+ MK Y + P+IEH+GC+
Sbjct: 314 FNKMKDEYGIEPKIEHYGCM 333
>gi|27545050|gb|AAO18456.1| hypothetical protein, 3'-partial [Oryza sativa Japonica Group]
Length = 382
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 141/266 (53%), Gaps = 22/266 (8%)
Query: 62 LEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------------SNNVMVSTA 103
L AA F M P+ TF LL CA P + + VS
Sbjct: 108 LRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNT 167
Query: 104 LLDMYAKFGRMDLATV--VFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
L+ MY+ FG L VFD M W+A++ G+V+ +A++ FR MQ +GV+
Sbjct: 168 LIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQ 227
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
D +T+I VL ++ L + W+ R+V ++ +V +CN L+D ++ G ++ A V
Sbjct: 228 ADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAV 287
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F+ M +R++VSW S+I A+ G EA+ F M+ D+V+F G LTACSHAG++
Sbjct: 288 FEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMV 347
Query: 280 EDGLQYFDIMKKIYRVSPQIEHHGCI 305
++G YFD MK Y + P+IEH+GC+
Sbjct: 348 DEGCGYFDAMKVEYGIEPKIEHYGCM 373
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
++ V W++ I + R G +A F M+ G +T + +L+ D +
Sbjct: 193 ESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWV 252
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
+V + AL+D AK G +D A VF+ M R WT++++
Sbjct: 253 RRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRG 312
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
+EA+ F M+++GV PD + I VL C++
Sbjct: 313 KEAVRVFEEMKVAGVPPDDVAFIGVLTACSH 343
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 135/217 (62%), Gaps = 2/217 (0%)
Query: 91 ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
+ N + A++ YAK G + A +FD + D W++++ + + +F ++LE
Sbjct: 570 SQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLE 629
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
FR MQ + V+PD + I SVL+ CA++ L +G W+H YV + + K + + N+L+D+++
Sbjct: 630 LFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFA 689
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ GC++ A QVF M ++ +SWNSII+G A NGF EAL F M + +EV+F G
Sbjct: 690 KCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLG 749
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L AC++ L+++GL +F+ MK ++ + PQ++H+GC+
Sbjct: 750 VLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCV 786
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 127/216 (58%), Gaps = 3/216 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P NV+ ++ +A +G ++ A ++FD M R WT L++G+ + + EA+ F
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R M G+ P +T+++V+ +N+ + +G +H Y K+ + RV N+L+D+Y++
Sbjct: 61 RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120
Query: 211 GCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G ++ + +VF M +R LVSW SII GFA++G EALE F M++ + + ++F
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSV 180
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ ACSH GL+E GL +F M Y + P+I+H GCI
Sbjct: 181 INACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCI 216
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 134/298 (44%), Gaps = 50/298 (16%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD--FPSN----- 96
TT W + + +S +A + + + + G P ++TF +L CA P
Sbjct: 374 TTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMH 433
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++ VS +L+ +YA G + A +FD M D W +L+ G+ +R+ F+
Sbjct: 434 SHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFK 493
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E L F +MQ V+ D +T++ V++ C ++ + M RY+ + + +V + NTL+
Sbjct: 494 EVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLI 553
Query: 205 DVYSRFGCIEFARQVFQRMHKRT-------------------------------LVSWNS 233
D Y R G ++ A +VF +M + L+SW+S
Sbjct: 554 DYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSS 613
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+I ++ ++LE F MQ+ K D V L+AC+H G ++ G D +++
Sbjct: 614 MICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRR 671
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 21/198 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V WT I + R+ EA F M G +PS IT + ++ ++
Sbjct: 37 VVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHG 96
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFE 144
++ V +L+D+YAK G + + VFD M R WT++++GF
Sbjct: 97 YCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSV 156
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTL 203
EALE F M+ +G+ P+ +T +SV+N C++ + GL + V + + ++ +
Sbjct: 157 EALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCI 216
Query: 204 MDVYSRFGCIEFARQVFQ 221
+D+ R G + A Q+ +
Sbjct: 217 IDMLGRAGRLCEAEQIIE 234
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 114/298 (38%), Gaps = 65/298 (21%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL- 104
V WTS IS G +EA F MR G P+ ITF+++++ C S+ +V L
Sbjct: 140 VSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINAC----SHGGLVEQGLA 195
Query: 105 ---------------------LDMYAKFGRMDLATVVFD---VMRGCDFWTALLNGFVKR 140
+DM + GR+ A + + V W LL K
Sbjct: 196 FFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSK- 254
Query: 141 DYFEEALEYFRVMQISGVE----PDYLTIISVLNVCAN----------------VRTLGI 180
Y E + + IS +E D+ + +VLN V+ G+
Sbjct: 255 -YGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIVKVPGL 313
Query: 181 GLWMHR-YVPKQDFK--------DNVRVCNTLMDVYSRFGCIE-----FARQVFQRMHKR 226
L + R +V + K + C M R ++ FA +VF+++
Sbjct: 314 ALVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESP 373
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
T WN+++ G A + +A+ ++ Q+ K D ++F L AC+ ++G Q
Sbjct: 374 TTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQ 431
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 157/278 (56%), Gaps = 16/278 (5%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMR---LYGTNPSHITFVTLLSGCA------ 91
++ + V WT+ I + R G + EA F M + N +V + GC
Sbjct: 187 SVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKM--GCVGLAREL 244
Query: 92 --DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEAL 147
+ NV+ T+++ Y G ++ A ++FD+M + W A++ G+ + +AL
Sbjct: 245 FNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDAL 304
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
E FR MQ + VEP+ +T++ VL A++ L +G W+HR+ ++ + R+ L+D+Y
Sbjct: 305 ELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMY 364
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
++ G I A+ F+ M +R SWN++I GFAVNG EALE F M + F +EV+
Sbjct: 365 AKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMI 424
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L+AC+H GL+E+G ++F+ M++ + ++PQ+EH+GC+
Sbjct: 425 GVLSACNHCGLVEEGRRWFNAMER-FGIAPQVEHYGCM 461
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 29/238 (12%)
Query: 78 PSHITFVTLLSGCADFPSN-----------------NVMVSTALLDMYAKFGRMDLATVV 120
P TF L+ GCA + ++ V+TAL+DMY KFG + A V
Sbjct: 123 PDGYTFTALVKGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKV 182
Query: 121 FDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL 178
FD M R WTA++ G+ + EA F M+ + D + ++++ + +
Sbjct: 183 FDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEME----DRDIVAFNAMIDGYVKMGCV 238
Query: 179 GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF 238
G+ R + + + NV +++ Y G +E A+ +F M ++ + +WN++I G+
Sbjct: 239 GLA----RELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGY 294
Query: 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG--LQYFDIMKKIYR 294
N +ALE F MQ + +EV+ L A + G ++ G + F + KK+ R
Sbjct: 295 CQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDR 352
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 143 FEEALEYFRVM--QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
F + FR + Q PD T +++ CA G G +H V K ++ V
Sbjct: 104 FSQPFTLFRDLRRQAPPFTPDGYTFTALVKGCATRVATGEGTLLHGMVLKNGVCFDLYVA 163
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
L+D+Y +FG + AR+VF M R+ VSW ++IVG+A G + EA F+ M+
Sbjct: 164 TALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEME----D 219
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
D V+F + G + + F+ M++ VS
Sbjct: 220 RDIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVS 255
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 157/276 (56%), Gaps = 19/276 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------ 92
TV W S I + G + EA F M T +++ T+L G
Sbjct: 183 TVSWNSMIGGLVKVGELGEARRLFDEMPERDT----VSWNTILDGYVKAGEMNAAFELFE 238
Query: 93 -FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
P+ NV+ + ++ Y+K G MD+A ++FD M + WT +++G+ ++ ++A+
Sbjct: 239 KMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINL 298
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
+ M+ +G++ D T+IS+L+ CA LG+G +H + + FK + V N L+D+Y++
Sbjct: 299 YNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAK 358
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G +E A +F M ++ +VSWN+II G A++G +AL+ F+ M+ F D+V+F G
Sbjct: 359 CGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGV 418
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L AC+HAG +++GL YF M++ Y V P++EH+GC+
Sbjct: 419 LCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCM 454
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 8/194 (4%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISG 157
V L+ ++ +M LA VF+ ++ D + L+ V+ A F MQ SG
Sbjct: 51 VGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSG 110
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC--IEF 215
V D T +L C+ + + +H V K F ++ V N+L+D Y + G +
Sbjct: 111 VCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAA 170
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
AR+VF+ M +R VSWNS+I G G +GEA F+ M + D VS+ L
Sbjct: 171 ARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMP----ERDTVSWNTILDGYVK 226
Query: 276 AGLIEDGLQYFDIM 289
AG + + F+ M
Sbjct: 227 AGEMNAAFELFEKM 240
>gi|255540005|ref|XP_002511067.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550182|gb|EEF51669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 318
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 127/205 (61%), Gaps = 3/205 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V++ + L+DMYAK +MD A VFD + R WT+L+ G+ + + ++E LE FR +Q
Sbjct: 79 DVILGSCLIDMYAKCAQMDNAREVFDKIPVRNLVCWTSLIVGYARLNMYKEGLELFRELQ 138
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
I+GV D + V++ C ++ L G W+H Y + N+ V N L+D+YS+ G IE
Sbjct: 139 IAGVIADAALVACVVSACGHMGALAQGRWVHTYCERNGIDMNLSVRNALIDMYSKCGDIE 198
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGALTAC 273
A Q+F M K+ L SW ++I GFA+NG+ EALE F ++ K +EV+F G L+AC
Sbjct: 199 KAHQIFNGMVKKDLFSWTAMISGFAMNGYSDEALELFAQVETCNDVKPNEVTFLGVLSAC 258
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQ 298
SH G ++ G QYF M +IY ++PQ
Sbjct: 259 SHGGFVDKGFQYFKAMSQIYHITPQ 283
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 80/154 (51%), Gaps = 1/154 (0%)
Query: 130 WTALLNGFVKRDYFEEALEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
W ++++G+++ + +AL+ F ++ + V D +T+++ L C + +G +H +
Sbjct: 12 WNSMISGYLQCERNGDALKVFGELLNDNFVRFDEVTLVNALTACGRTGFVNLGKKIHALI 71
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
F +V + + L+D+Y++ ++ AR+VF ++ R LV W S+IVG+A E L
Sbjct: 72 VVNGFVLDVILGSCLIDMYAKCAQMDNAREVFDKIPVRNLVCWTSLIVGYARLNMYKEGL 131
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
E F +Q D ++AC H G + G
Sbjct: 132 ELFRELQIAGVIADAALVACVVSACGHMGALAQG 165
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
R +VSWNS+I G+ G+AL+ F L+ + DEV+ ALTAC G + G
Sbjct: 7 RDVVSWNSMISGYLQCERNGDALKVFGELLNDNFVRFDEVTLVNALTACGRTGFVNLG 64
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 150/280 (53%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V W + I+ + R G +A F +M +T + +L CA +
Sbjct: 162 VSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHAL 221
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N + ++L+ MYAK G ++ A VF+ M R WT+++ G + F+EA
Sbjct: 222 VVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEA 281
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
++ FR MQI+GV+ D TI +V++ C + L +G ++H Y + V N+L+D+
Sbjct: 282 VDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDM 341
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVS 265
YS+ G + A Q+F + KR + +W +I+GFA+NG EAL+ F M+ + +EV
Sbjct: 342 YSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVI 401
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G LTACSH GL+E G +F M K+Y + P+IEH+GC+
Sbjct: 402 FLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCM 441
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R 226
++ A V +L +G H K + V N L+++YS AR V +
Sbjct: 100 ISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWAS 159
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+VSWN+II G+ G +AL+ F+ M K + DEV+ L AC+ G ++ G
Sbjct: 160 DVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVG 215
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 128/215 (59%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P +++ TA+L YAK G +D A V+FD M D W +++G+ + EAL F
Sbjct: 185 MPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF 244
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R M + +P+ +T++SVL+ C + L G W+H Y+ + NV V L+D+YS+
Sbjct: 245 RRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKC 304
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G +E AR VF ++ + +V+WNS+IVG+A++GF EAL+ F M + ++F G L
Sbjct: 305 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGIL 364
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+AC H+G + +G F+ MK Y + P+IEH+GC+
Sbjct: 365 SACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCM 399
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 94/208 (45%), Gaps = 37/208 (17%)
Query: 108 YAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
YA GR+D + +F + FWTA+++G R E+AL ++ M GVEP+ T
Sbjct: 72 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 131
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
S+L +C + G +H K F ++ V L+DVY+R G + A+Q+F M +
Sbjct: 132 SSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 187
Query: 226 RTLVS-------------------------------WNSIIVGFAVNGFVGEALEYFNLM 254
++LVS WN +I G+ NG EAL F M
Sbjct: 188 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 247
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDG 282
K K +EV+ L+AC G +E G
Sbjct: 248 LKAKAKPNEVTVLSVLSACGQLGALESG 275
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 159/281 (56%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WT+ IS + + G EA F M + GT P+ TF T+L+ C
Sbjct: 77 VSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSL 136
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+++ V ++LLDMYAK G++ A VFD + D TA+++G+ + EEA
Sbjct: 137 VIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEA 196
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ FR +Q G+ +Y+T SVL + + L G +H +V + V + N+L+D+
Sbjct: 197 LDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDM 256
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVS 265
YS+ G + ++R++F M +RT++SWN+++VG++ +G EA+E F LM ++ K D V+
Sbjct: 257 YSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVT 316
Query: 266 FTGALTACSHAGLIEDGLQ-YFDIMKKIYRVSPQIEHHGCI 305
F L+ CSH G+ + GL+ +++++ + P+IEH+GC+
Sbjct: 317 FLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCV 357
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 108/201 (53%), Gaps = 5/201 (2%)
Query: 86 LLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
++ C + P V + T L+ +Y K + A V D M R WTA+++G+ +R Y
Sbjct: 36 MIKTCYEPP---VYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYA 92
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EAL F M +SG P+ T +VL C + +G +H V K F+ ++ V ++L
Sbjct: 93 SEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSL 152
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G I AR+VF + +R +VS +II G+A G EAL+ F +Q+ +++
Sbjct: 153 LDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNY 212
Query: 264 VSFTGALTACSHAGLIEDGLQ 284
V++ LTA S ++ G Q
Sbjct: 213 VTYASVLTALSGLAALDHGRQ 233
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 71/139 (51%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M I G+E ++ SVL C + + G +H ++ K ++ V + L+ +Y++ C
Sbjct: 1 MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+ AR+V M +R +VSW ++I G++ G+ EAL F M +E +F LT+
Sbjct: 61 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120
Query: 273 CSHAGLIEDGLQYFDIMKK 291
C+ + + G Q ++ K
Sbjct: 121 CTSSSGFQLGRQIHSLVIK 139
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 147/252 (58%), Gaps = 6/252 (2%)
Query: 57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDL 116
RSGC A ++ + + +Y T + + + +V+ L+ +A+ G+M
Sbjct: 147 RSGCDSSAIVQNSLIEMY-TRAGDLALAHKVFD--EMRERDVVSWNMLISAHARLGQMRK 203
Query: 117 ATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
AT +F+ M + WTA+++G+ + A++ FR MQ G EPD ++I++VL CA
Sbjct: 204 ATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQ 263
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ L +G W++ Y + + +CN LM++Y++ GCI+ A Q+F M + ++SW+++
Sbjct: 264 LGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTV 323
Query: 235 IVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
I G A +G EA+ F M+K G + + ++F G L+ACS+AGL+++GL +FD M +Y
Sbjct: 324 IGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVY 383
Query: 294 RVSPQIEHHGCI 305
V P +EH+GC+
Sbjct: 384 GVEPGVEHYGCV 395
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 38/198 (19%)
Query: 132 ALLNGFVKRDYFEEALE-YFRVMQISGVEPD------YLTIISVLNVCANVRTLGIGLWM 184
A++ + + +A+ Y R+++ PD T +L C L +G +
Sbjct: 82 AMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQV 141
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA----- 239
H +V + + V N+L+++Y+R G + A +VF M +R +VSWN +I A
Sbjct: 142 HTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQM 201
Query: 240 ---------------------VNGF--VGE---ALEYFNLMQKGVFKTDEVSFTGALTAC 273
V+G+ VG+ A++ F MQ F+ D+VS L AC
Sbjct: 202 RKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPAC 261
Query: 274 SHAGLIEDGLQYFDIMKK 291
+ G +E G + K+
Sbjct: 262 AQLGALELGRWIYAYCKR 279
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 147/252 (58%), Gaps = 6/252 (2%)
Query: 57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDL 116
RSGC A ++ + + +Y T + + + +V+ L+ +A+ G+M
Sbjct: 147 RSGCDSSAIVQNSLIEMY-TRAGDLALAHKVFD--EMRERDVVSWNMLISAHARLGQMRK 203
Query: 117 ATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
AT +F+ M + WTA+++G+ + A++ FR MQ G EPD ++I++VL CA
Sbjct: 204 ATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQ 263
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ L +G W++ Y + + +CN LM++Y++ GCI+ A Q+F M + ++SW+++
Sbjct: 264 LGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTV 323
Query: 235 IVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
I G A +G EA+ F M+K G + + ++F G L+ACS+AGL+++GL +FD M +Y
Sbjct: 324 IGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVY 383
Query: 294 RVSPQIEHHGCI 305
V P +EH+GC+
Sbjct: 384 GVEPGVEHYGCV 395
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 38/198 (19%)
Query: 132 ALLNGFVKRDYFEEALE-YFRVMQISGVEPD------YLTIISVLNVCANVRTLGIGLWM 184
A++ + + +A+ Y R+++ PD T +L C L +G +
Sbjct: 82 AMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQV 141
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA----- 239
H +V + + V N+L+++Y+R G + A +VF M +R +VSWN +I A
Sbjct: 142 HTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQM 201
Query: 240 ---------------------VNGF--VGE---ALEYFNLMQKGVFKTDEVSFTGALTAC 273
V+G+ VG+ A++ F MQ F+ D+VS L AC
Sbjct: 202 RKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPAC 261
Query: 274 SHAGLIEDGLQYFDIMKK 291
+ G +E G + K+
Sbjct: 262 AQLGALELGRWIYAYCKR 279
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 130/211 (61%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+V + L+DMY + G + A +FD M D WT+++ G+ + F +A++ F+ M
Sbjct: 159 DVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMM 218
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ V+PD +T+ SVL+ CA++ L +G +H Y+ + + ++ V N+L+D+Y + G +E
Sbjct: 219 AAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVE 278
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +VF RM + VSW S+I G AVNGF AL+ F+ M + + +F G L AC+
Sbjct: 279 KALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACA 338
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
HAGL+ GL+YF+ M+ ++ + P ++H+GC+
Sbjct: 339 HAGLVNKGLEYFESMESVHGLVPAMKHYGCV 369
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 103/185 (55%), Gaps = 2/185 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG 157
VS AL+ MYA G++ A +FD M D W L+ G+ + + ++E L F M +
Sbjct: 61 VSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAAN 120
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
++ D +T++ ++ C+++ M +Y+ + + + +V + NTL+D+Y R G + AR
Sbjct: 121 IKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAAR 180
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
++F M KR ++SW S+I G++ +A++ F M K D+V+ L+AC+H G
Sbjct: 181 KLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLG 240
Query: 278 LIEDG 282
++ G
Sbjct: 241 KLDVG 245
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%)
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
V+ + N+ I +H + K F+ + V N L+ +Y+ G + FA+++F M R
Sbjct: 30 VVALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRD 89
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
LVSWN++I G++ E L F+ M K D V+ + ACSH G
Sbjct: 90 LVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLG 139
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 128/212 (60%), Gaps = 5/212 (2%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
+ V +LL +YA G + A VFD M D W +++NGF + EEAL + M
Sbjct: 156 IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS 215
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
G++PD TI+S+L+ CA + L +G +H Y+ K N+ N L+D+Y+R G +E
Sbjct: 216 KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 275
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ--KGVFKTDEVSFTGALTAC 273
A+ +F M + VSW S+IVG AVNGF EA+E F M+ +G+ E++F G L AC
Sbjct: 276 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC-EITFVGILYAC 334
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH G++++G +YF M++ Y++ P+IEH GC+
Sbjct: 335 SHCGMVKEGFEYFRRMREEYKIEPRIEHFGCM 366
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISG-VEPD---YLTIISVLNVCANVRTLGIGLWM 184
W L+ G+ + A +R M++SG VEPD Y +I + A+VR +G +
Sbjct: 87 IWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVR---LGETI 143
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
H V + F + V N+L+ +Y+ G + A +VF +M ++ LV+WNS+I GFA NG
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
EAL + M K D + L+AC+ G + G + M K+
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV 251
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 24/220 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I+ +G EA +T M G P T V+LLS CA +
Sbjct: 188 VAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVY 247
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N+ S LLD+YA+ GR++ A +FD M + WT+L+ G + +EA
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 307
Query: 147 LEYFRVMQ-ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN--TL 203
+E F+ M+ G+ P +T + +L C++ + G R + ++++K R+ + +
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRM-REEYKIEPRIEHFGCM 366
Query: 204 MDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
+D+ +R G ++ A + + M + +V W +++ V+G
Sbjct: 367 VDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406
>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
Length = 611
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 143/257 (55%), Gaps = 20/257 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADF-----------------PSNNVMVSTALLDMYAK 110
F RM G P TFV+LL CA + + V+ L++MYA+
Sbjct: 126 FVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAE 185
Query: 111 FGRMDLATVVFDVMRG-CDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G + A V+FD M G C + A++ V+ EAL FR MQ G++P +T+ISV
Sbjct: 186 CGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISV 245
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ CA + L +G W+H Y+ K V+V L+D+Y++ G +E A VFQ M R
Sbjct: 246 LSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDK 305
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
+W+ ++V +A +G+ EA+ F M+K K D+V+F G L ACSH+G++ +GLQYFD
Sbjct: 306 QAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDS 365
Query: 289 MKKIYRVSPQIEHHGCI 305
M++ Y + I+H+GC+
Sbjct: 366 MRE-YGIVSGIKHYGCV 381
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 20/222 (9%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
+ V + + I+ RS EA + F M+ G P+ +T +++LS CA +
Sbjct: 202 ECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWI 261
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYF 143
+ V V+TAL+DMYAK G ++ A VF M D W+ ++ + Y
Sbjct: 262 HDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYG 321
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EA+ F M+ G++PD +T + VL C++ + GL + + ++ +
Sbjct: 322 REAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCV 381
Query: 204 MDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV 244
D+ +R G +E A + + K T + W +++ A +G V
Sbjct: 382 TDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDV 423
>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 974
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 151/269 (56%), Gaps = 22/269 (8%)
Query: 59 GCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------------FPSNNVMV 100
G + EA F +++ G P+ +TF LL GC F S++ MV
Sbjct: 590 GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMV 649
Query: 101 STALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
+LL +Y R + +F + +G WTAL++G+ ++++ E+AL++++ M+
Sbjct: 650 CVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDN 709
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
+ PD SVL CA + +L G +H + F + C++L+D+Y++ G ++ +
Sbjct: 710 ILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSL 769
Query: 218 QVFQRMHKRT-LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
QVF+ M +R ++SWNS+IVG A NG+ EALE F M++ DEV+F G L+ACSHA
Sbjct: 770 QVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHA 829
Query: 277 GLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G + +G + FD+M Y++ P+++H GC+
Sbjct: 830 GRVSEGRKVFDLMVNNYKLQPRVDHLGCM 858
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 19/268 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
V W IS H + G EA F ++ G + + ++LS A
Sbjct: 273 NVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVH 332
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+NV V +AL++MYAK +MD A VF+ + R W A+L GF + +
Sbjct: 333 AQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQ 392
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E +E+F M+ G +PD T S+ + CA++ L G +H + K F N+ V N L+
Sbjct: 393 EVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALV 452
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G ++ AR+ F+ M VSWN+IIVG+ + EA F M DEV
Sbjct: 453 DMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEV 512
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKI 292
S ++AC++ ++ G Q ++ K+
Sbjct: 513 SLASIVSACANVQELKRGQQCHCLLVKV 540
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 135/265 (50%), Gaps = 21/265 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + + ++G E F+ M+ +G P TF ++ S CA
Sbjct: 376 VLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTV 435
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
++N+ V+ AL+DMYAK G + A F++M+ D W A++ G+V+ +Y +EA
Sbjct: 436 MIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEA 495
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
FR M +GV PD +++ S+++ CANV+ L G H + K + ++L+D+
Sbjct: 496 FFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDM 555
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G + AR VF M R +VS N++I G+ + G + EA+ F +Q K EV+F
Sbjct: 556 YVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTF 614
Query: 267 TGALTACSHAGLIEDGLQ-YFDIMK 290
G L C A ++ G Q + +MK
Sbjct: 615 AGLLDGCDGAFMLNLGRQIHGQVMK 639
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 129/249 (51%), Gaps = 20/249 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
TV WT+ I+ + R G +EA F RM+ G P IT VT+++
Sbjct: 208 TVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNA--------------- 252
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
Y GR+ A +F + + W +++G KR + EEA+ +F ++ +G++
Sbjct: 253 ---YVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATR 309
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
++ SVL+ A++ L G +H K+ DNV V + L+++Y++ ++ A+QVF
Sbjct: 310 SSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNS 369
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ +R +V WN+++ GFA NG E +E+F+ M++ + DE +FT +AC+ + G
Sbjct: 370 LGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFG 429
Query: 283 LQYFDIMKK 291
Q +M K
Sbjct: 430 GQLHTVMIK 438
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 99/254 (38%), Gaps = 54/254 (21%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV--------- 98
W S +S + G F M + P+ TF +LS C+ N
Sbjct: 110 WNSVLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVF 169
Query: 99 --------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
L+DMYAK + A +VFD D WTAL+ G+V+ + EA++
Sbjct: 170 KTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVK 229
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F MQ G PD +T+++V+N Y
Sbjct: 230 VFDRMQRVGHAPDQITLVTVVN-----------------------------------AYV 254
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
G + AR++F ++ +V+WN +I G A GF EA+ +F ++K K S
Sbjct: 255 ALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGS 314
Query: 269 ALTACSHAGLIEDG 282
L+A + ++ G
Sbjct: 315 VLSAIASLSMLNYG 328
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 2/190 (1%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQIS 156
++ ++D+Y K G +D A F + D W ++L+ ++ F ++ F M
Sbjct: 77 LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNH 136
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
V P+ T VL+ C+ ++ + G +H V K F L+D+Y++ + A
Sbjct: 137 EVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDA 196
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
R VF VSW ++I G+ +GF EA++ F+ MQ+ D+++ + A
Sbjct: 197 RLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVAL 256
Query: 277 GLIEDGLQYF 286
G + D + F
Sbjct: 257 GRLADARKLF 266
>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 153/280 (54%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
++ W++ ++ + ++G LEA F+RM G PS T V +L+ C+D
Sbjct: 287 SITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHS 346
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
++ +TAL+DMYAK G + A FD + R WT+L++G+V+ EE
Sbjct: 347 FLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEE 406
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL +R M+ +G+ P+ T+ SVL C+++ TL +G +H + K F V + + L
Sbjct: 407 ALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALST 466
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ G +E VF+R + +VSWN++I G + NG EALE F M + D+V+
Sbjct: 467 MYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVT 526
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F ++ACSH G +E G YF++M + P+++H+ C+
Sbjct: 527 FVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACM 566
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 100/202 (49%), Gaps = 6/202 (2%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++ V T+L+ MY K G ++ VF M R W+ +++G+ R EEA++ F +
Sbjct: 151 GDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLF 210
Query: 154 ---QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+ G + DY+ +VL+ A +G+G +H K V + N L+ +YS+
Sbjct: 211 LREKEEGSDSDYV-FTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKC 269
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
+ A ++F R ++W++++ G++ NG EA++ F+ M K E + G L
Sbjct: 270 ESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVL 329
Query: 271 TACSHAGLIEDGLQYFDIMKKI 292
ACS +E+G Q + K+
Sbjct: 330 NACSDICYLEEGKQLHSFLLKL 351
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 38/172 (22%)
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
+ P T++ L + R L G +H + + ++ N L++ Y++ G + A
Sbjct: 10 LNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAH 69
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK--------------GVFKTDE 263
+F + + +VSWNS+I G++ NG + + L ++ G+FK +
Sbjct: 70 SIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAES 129
Query: 264 VSFTGALTACSH------------------------AGLIEDGLQYFDIMKK 291
+ + +H AGL+EDGL+ F M +
Sbjct: 130 SLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPE 181
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 156/318 (49%), Gaps = 58/318 (18%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WTS +S H R G +E F RMR+ G + +LS D +
Sbjct: 1075 VTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGY 1134
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRG------------------CD-- 128
N + V +L+ +Y K G ++ A ++F ++ CD
Sbjct: 1135 VVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEA 1194
Query: 129 ---------------------FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
W+A++ GF + EEALE FR MQ++ V+ + +TI S
Sbjct: 1195 FAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIAS 1254
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
VL+VCA + L +G +H +V + N+ V N L+++Y++ G + VF+++ +
Sbjct: 1255 VLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKD 1314
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
L+SWN+++ G+ ++G A+ F+ M K F+ D V+F L+ACSHAGL+ +G + FD
Sbjct: 1315 LISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFD 1374
Query: 288 IMKKIYRVSPQIEHHGCI 305
M K +RV PQ+EH+ C+
Sbjct: 1375 KMIKEFRVEPQMEHYACM 1392
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 129/305 (42%), Gaps = 66/305 (21%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----------- 96
W S + + G EA + RMR G + TF ++ CA S
Sbjct: 941 WNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVV 1000
Query: 97 ------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
N+ V L+ MY K GRMD A VF+ M R C W +++G+ A E
Sbjct: 1001 EMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASE 1060
Query: 149 YFRVMQISGVEPDYLTIISVLNVCA-------------NVRTLGIGLW------------ 183
FR+M +G+EP+ +T S+L+ A +R GIG
Sbjct: 1061 MFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSV 1120
Query: 184 ----------MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
+H YV K F++ + V N+L+ +Y + G + AR +F + + +VSWN+
Sbjct: 1121 DLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNA 1180
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDE--------VSFTGALTACSHAGLIEDGLQY 285
+I +A G+ EA F ++ KTDE VS++ + + G E+ L+
Sbjct: 1181 LISSYADLGWCDEAFAIFLQLE----KTDEYPMVRPNVVSWSAVIGGFASKGQGEEALEL 1236
Query: 286 FDIMK 290
F M+
Sbjct: 1237 FRRMQ 1241
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 101/192 (52%), Gaps = 5/192 (2%)
Query: 104 LLDMYAKFGRMDLATVVFDV-----MRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
++ +YA FG + A VF+V W ++L V Y EEALE + M+ GV
Sbjct: 910 VVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGV 969
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
D T V+ CA + + + +H +V + F+ N+ V N LM +Y + G ++ AR+
Sbjct: 970 SADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARK 1029
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF+RM R+ VSWN+++ G+A+N A E F +M + + V++T L++ + G
Sbjct: 1030 VFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQ 1089
Query: 279 IEDGLQYFDIMK 290
+ ++ F M+
Sbjct: 1090 HVETMELFGRMR 1101
>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
Length = 671
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 143/257 (55%), Gaps = 20/257 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADF-----------------PSNNVMVSTALLDMYAK 110
F RM G P TFV+LL CA + + V+ L++MYA+
Sbjct: 126 FVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAE 185
Query: 111 FGRMDLATVVFDVMRG-CDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G + A V+FD M G C + A++ V+ EAL FR MQ G++P +T+ISV
Sbjct: 186 CGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISV 245
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ CA + L +G W+H Y+ K V+V L+D+Y++ G +E A VFQ M R
Sbjct: 246 LSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDK 305
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
+W+ ++V +A +G+ EA+ F M+K K D+V+F G L ACSH+G++ +GLQYFD
Sbjct: 306 QAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDS 365
Query: 289 MKKIYRVSPQIEHHGCI 305
M++ Y + I+H+GC+
Sbjct: 366 MRE-YGIVSGIKHYGCV 381
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 20/222 (9%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
+ V + + I+ RS EA + F M+ G P+ +T +++LS CA +
Sbjct: 202 ECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWI 261
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYF 143
+ V V+TAL+DMYAK G ++ A VF M D W+ ++ + Y
Sbjct: 262 HDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYG 321
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EA+ F M+ G++PD +T + VL C++ + GL + + ++ +
Sbjct: 322 REAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCV 381
Query: 204 MDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV 244
D+ +R G +E A + + K T + W +++ A +G V
Sbjct: 382 TDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDV 423
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 154/310 (49%), Gaps = 50/310 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W++ IS + ++G EA + F M G + V++LS CA
Sbjct: 270 VSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGL 329
Query: 95 ------SNNVMVSTALLDMYA-------------------------------KFGRMDLA 117
+ V + AL+ MY+ K G ++ A
Sbjct: 330 VIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKA 389
Query: 118 TVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
+FDVM D W+A+++G+ + D F E L F MQ+ + PD ++SV++ C ++
Sbjct: 390 RALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHL 449
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
L G W+H Y+ K K NV + TL+D+Y + GC+E A +VF M ++ + SWN++I
Sbjct: 450 AALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALI 509
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV 295
+G AVNG V +L+ F+ M+ +E++F G L AC H GL+++G +F M + + +
Sbjct: 510 IGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGI 569
Query: 296 SPQIEHHGCI 305
P ++H+GC+
Sbjct: 570 EPNVKHYGCM 579
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 126/277 (45%), Gaps = 55/277 (19%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV 98
+S + +V W S ++ + + G + EA L F +M P N+
Sbjct: 201 ESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQM----------------------PQRNI 238
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQIS 156
+ S +++ + K G++ A +F+ M D W+AL++G+ + +EEAL F M +
Sbjct: 239 VASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNAN 298
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS-------- 208
G+ D + ++SVL+ CA++ + G +H V + + V + N L+ +YS
Sbjct: 299 GMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDA 358
Query: 209 -----------------------RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
+ G +E AR +F M ++ +VSW+++I G+A +
Sbjct: 359 QKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFS 418
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
E L F+ MQ G + DE ++AC+H ++ G
Sbjct: 419 ETLALFHEMQLGQIRPDETILVSVISACTHLAALDQG 455
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 109 AKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
+ F +D + +FD + + W ++ +++ + E+AL +++M + V PD T
Sbjct: 86 SPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYP 145
Query: 167 SVLNVCANVRTLGIG-LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
V+ CA VR L G +H +V K F +V V NTL+++Y+ G + AR++F
Sbjct: 146 LVVQACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPV 204
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
VSWNSI+ G+ G V EA F+ M +
Sbjct: 205 LDSVSWNSILAGYVKKGDVEEAKLIFDQMPQ 235
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 134/220 (60%), Gaps = 7/220 (3%)
Query: 88 SGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ AD S NVM+ D Y K G + A +FDVM G + WT ++ + + EE
Sbjct: 137 AASADVVSWNVMI-----DGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEE 191
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+E FR MQ+ G+EPD + ++SVL+ C ++ + +G W+HR+V ++ + + N ++D
Sbjct: 192 AIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIID 251
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y + G ++ A +VF+ M ++++V+W ++I GFA++G EA+E F M+K ++++
Sbjct: 252 MYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDIT 311
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L+ CSH GL + G YF M Y++ P++EH+GC+
Sbjct: 312 FLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCM 351
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 21/219 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
V WT I + + EA F RM++ G P + +++LS C D
Sbjct: 173 VVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHR 232
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+ + A++DMY K G + A VF+ M + WT ++ GF E
Sbjct: 233 FVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLE 292
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLM 204
A+E FR M+ V P+ +T ++VL+VC++V +G W + + Q K V ++
Sbjct: 293 AVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMI 352
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
D+ R GC+ AR + Q M K W +++ +G
Sbjct: 353 DLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHG 391
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 163/312 (52%), Gaps = 52/312 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------DF 93
V W S ++ + G +A F RMR G +P+ +T V+++S CA D+
Sbjct: 309 VSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDY 368
Query: 94 PSNNVM-----VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK------- 139
N M V A +DM+ K G +++A +FD M D WT +++G+ K
Sbjct: 369 IDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIA 428
Query: 140 RDYFE------------------------EALEYFRVMQI--SGVEPDYLTIISVLNVCA 173
RD F+ EAL FR +Q+ SG PD +T++S L+ CA
Sbjct: 429 RDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACA 488
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
+ + IG W+H Y+ K+ + N + +L+D+YS+ G +E A +VF + + + W++
Sbjct: 489 QLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSA 548
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
+I G A++G A+E F MQ+ K + V+FT L ACSH+GL+++G + FD M+++Y
Sbjct: 549 MIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVY 608
Query: 294 RVSPQIEHHGCI 305
V P+ +H+ C+
Sbjct: 609 GVVPKTKHYSCM 620
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 37/233 (15%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYFEEALEYFR 151
++V V +L+ YA G +DLA +VF+++ G + W +++ GFV+ Y ++AL+ F
Sbjct: 273 DDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFE 332
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M+ GV P+ +T++SV++ CA L +G + Y+ + + N+ VCN +D++ + G
Sbjct: 333 RMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCG 392
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAV------------------------------- 240
+E AR +F M KR +VSW +II G+A
Sbjct: 393 EVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQ 452
Query: 241 NGFVGEALEYFNLMQ--KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+G EAL F +Q K + D+V+ L+AC+ G ++ G +KK
Sbjct: 453 SGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKK 505
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 5/172 (2%)
Query: 108 YAKFGRMDLATVVFDVMRGCDF--WTALLNGFV-KRDYFEEALEYFRVMQISGVEPDYLT 164
++ F +D A VFD + + W L+ D + L + R++ S P+ T
Sbjct: 183 FSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFT 242
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM- 223
++ A R +G +H K F D+V V N+L+ Y+ G ++ A VF+ +
Sbjct: 243 FPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIE 302
Query: 224 -HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
+ + +VSWNS++ GF G+ +AL+ F M+ + V+ ++AC+
Sbjct: 303 GNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACA 354
>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 867
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 150/278 (53%), Gaps = 20/278 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WT+ IS ++G +A F++MR G P+H T+ +L+ +P
Sbjct: 363 VSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT--VHYPVFVSEMHAEVI 420
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
+ V TALLD Y K G A VF+++ D W+A+L G+ + EEA +
Sbjct: 421 KTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAK 480
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLG-IGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
F + G++P+ T SV+N CA+ G H Y K + + V + L+ +Y
Sbjct: 481 LFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMY 540
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
++ G I+ A +VF+R +R LVSWNS+I G++ +G +ALE F+ MQK D V+F
Sbjct: 541 AKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFI 600
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G +TAC+HAGL+E G +YF+ M + ++P ++H+ C+
Sbjct: 601 GVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCM 638
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 97/181 (53%), Gaps = 2/181 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++V V T+L+DMY K ++ VFD M R WT+LL G+ + E F M
Sbjct: 126 DHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQM 185
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q GV P+ T+ +V+ N +GIGL +H V K F++ + V N+L+ +YSR G +
Sbjct: 186 QYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGML 245
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
AR VF +M R V+WNS+I G+ NG E E FN MQ K ++F + +C
Sbjct: 246 RDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSC 305
Query: 274 S 274
+
Sbjct: 306 A 306
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 131/268 (48%), Gaps = 25/268 (9%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---- 94
K I V W S I+ + R+G LE F +M+L G P+H+TF +++ CA
Sbjct: 254 KMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELAL 313
Query: 95 -------------SNNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFV 138
+ + +V TAL+ +K MD A +F +M + WTA+++G +
Sbjct: 314 VKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCL 373
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ ++A+ F M+ GV+P++ T ++L V V MH V K +++ +
Sbjct: 374 QNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSE----MHAEVIKTNYERSSS 429
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V L+D Y + G A +VF+ + + L++W++++ G+A G EA + F+ + K
Sbjct: 430 VGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEG 489
Query: 259 FKTDEVSFTGALTAC-SHAGLIEDGLQY 285
K +E +F+ + AC S E G Q+
Sbjct: 490 IKPNEFTFSSVINACASPTAAAEQGKQF 517
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 114/246 (46%), Gaps = 20/246 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WTS ++ + +G F +M+ G P+ T T+++ +
Sbjct: 160 VSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAM 219
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ V +L+ +Y++ G + A VFD M D+ W +++ G+V+ E
Sbjct: 220 VVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEV 279
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
E F MQ++GV+P ++T SV+ CA++R L + M K F + V LM
Sbjct: 280 FEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVA 339
Query: 207 YSRFGCIEFARQVFQRMHK-RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
S+ ++ A +F M + + +VSW ++I G NG +A+ F+ M++ K + +
Sbjct: 340 LSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFT 399
Query: 266 FTGALT 271
++ LT
Sbjct: 400 YSAILT 405
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
LL + + +EAL F + S ++PD T+ V N+CA +G +H K
Sbjct: 64 LLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVKFG 123
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
D+V V +L+D+Y + + R+VF M +R +VSW S++ G++ NG G E F
Sbjct: 124 LVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFC 183
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
MQ + + + + A + G++ GLQ
Sbjct: 184 QMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQ 215
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 150/280 (53%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V W + I+ + R G +A F +M +T + +L CA +
Sbjct: 74 VSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHAL 133
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N + ++L+ MYAK G ++ A VF+ M R WT+++ G + F+EA
Sbjct: 134 VVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEA 193
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
++ FR MQI+GV+ D TI +V++ C + L +G ++H Y + V N+L+D+
Sbjct: 194 VDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDM 253
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVS 265
YS+ G + A Q+F + KR + +W +I+GFA+NG EAL+ F M+ + +EV
Sbjct: 254 YSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVI 313
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G LTACSH GL+E G +F M K+Y + P+IEH+GC+
Sbjct: 314 FLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCM 353
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R 226
++ A V +L +G H K + V N L+++YS AR V +
Sbjct: 12 ISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWAS 71
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+VSWN+II G+ G +AL+ F+ M K + DEV+ L AC+ G ++ G
Sbjct: 72 DVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVG 127
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 129/211 (61%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V A++ YAK G +D A +F+ M R WTA++ G+ + D EA+ FR MQ
Sbjct: 204 DVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQ 263
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ VEPD + +++ L+ CA++ L +G W+H Y+ K V + N L+D+Y++ G IE
Sbjct: 264 LEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIE 323
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +VF+ M +++++W S+I G A++G EALE F+ M++ K +E++F L+AC
Sbjct: 324 KALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACC 383
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H GL+E G YF M Y + P+I+H+GC+
Sbjct: 384 HVGLVEMGRWYFKCMGTKYGIKPKIQHYGCM 414
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 104/219 (47%), Gaps = 21/219 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
+ WT+ I+ + + EA F RM+L P I + LS CA
Sbjct: 236 VISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHN 295
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
S V ++ AL+DMYAK G+++ A VF M + WT++++G E
Sbjct: 296 YIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGRE 355
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV-PKQDFKDNVRVCNTLM 204
ALE F M+ + ++P+ +T +++L+ C +V + +G W + + K K ++ ++
Sbjct: 356 ALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMI 415
Query: 205 DVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNG 242
D+ R G ++ A+++ + M + W S++ ++G
Sbjct: 416 DLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHG 454
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
F+D V N ++ Y++ G ++ AR +F+RM +R ++SW ++I G+A EA+ F
Sbjct: 202 FRD-VAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFR 260
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
MQ + DE++ AL+AC+H G +E G
Sbjct: 261 RMQLEEVEPDEIAMLAALSACAHLGALELG 290
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 131/215 (60%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P+ +++ +++D YAK G M++A +FD M + W+ +++G+ + +EAL F
Sbjct: 234 MPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLF 293
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R M G++PD ++++ ++ C+ + L G W+H Y+ + ++ V L+D+Y +
Sbjct: 294 RQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKC 353
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + AR++F M +R +VSWN +IVG +NGF EALE F M+ D++ F G L
Sbjct: 354 GSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVL 413
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSHA L+ +GL F+ MK +YR+ P++EH+GC+
Sbjct: 414 MACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCL 448
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 19/195 (9%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+V V L+ MY + G A VFD D W ++L G+V E A F
Sbjct: 142 GGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDE 201
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV-----CNTLMDVY 207
M V V ++ G G M + F D++ N+++D Y
Sbjct: 202 MPERDV------------VSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGY 249
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
++ G +E AR++F +M ++ ++SW+ +I G+A + EAL F M K D VS
Sbjct: 250 AKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVV 309
Query: 268 GALTACSHAGLIEDG 282
GA++ACS G ++ G
Sbjct: 310 GAVSACSQLGALDQG 324
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%)
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
E AL ++ M+ G+ D T VL C + L G + K+ F +V V N L
Sbjct: 92 ERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGL 151
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+ +Y R G +AR VF ++ LVSWNS++ G+ G + A F+ M
Sbjct: 152 ISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEM 202
>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 158/281 (56%), Gaps = 21/281 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------ 92
TV W + I+ + +G +A F++M +T + L CA
Sbjct: 161 TVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHA 220
Query: 93 -FPSN----NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+N N + ++L+ MYAK G+++ A +FD M R WT++++G+ + +E
Sbjct: 221 LLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKE 280
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A++ FR MQI+GV+ D TI +V++ C + L +G ++H Y ++ V N+L+D
Sbjct: 281 AIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLID 340
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEV 264
+YS+ G I+ A +F M KR SW ++I+GFA NG GEAL+ F M ++G +E+
Sbjct: 341 MYSKCGDIKKAYDIFCGMVKRDNFSW-TVIMGFAANGLSGEALDLFAQMEEEGGVMPNEI 399
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G LT+CSH GL+E G ++F M IY ++P+IEH+GC+
Sbjct: 400 TFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCM 440
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 4/192 (2%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFD-VMRGCD---FWTALLNGFVKRDYFEEALEYF 150
S++ V L++MY+ A V D +G W ++ G++ +AL+ F
Sbjct: 125 SSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAF 184
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M V D +T+++ L CA + +G H + F+ N + ++L+ +Y++
Sbjct: 185 SQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKC 244
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G +E AR++F M R V W S+I G+ G EA++ F MQ K D+ + + +
Sbjct: 245 GQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVV 304
Query: 271 TACSHAGLIEDG 282
++C G ++ G
Sbjct: 305 SSCGQMGALDLG 316
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D ++ + L+ A + ++ +G +H K + V NTL+++YS AR V
Sbjct: 92 DNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVL 151
Query: 221 QRMHKRT--LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
K VSWN+II G+ G +AL+ F+ M KG D+V+ AL AC+ +
Sbjct: 152 DSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCM 211
Query: 279 IEDG 282
++ G
Sbjct: 212 MKVG 215
>gi|147833682|emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
Length = 583
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 133/216 (61%), Gaps = 7/216 (3%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+BV ++ +L+ YA R+D A VFD M R W +++ FV+ F+ AL F M
Sbjct: 161 SBVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEM 220
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ---DFKDNVRVCNTLMDVYSRF 210
Q EPD TI S+ N CA + +L +G+W H ++ K+ D ++V + +L+D+Y +
Sbjct: 221 Q-KFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKXDADRVNDVLLNTSLVDMYCKC 279
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGA 269
G +E A Q+F RM KR + SWNS+I+GF+ +G V ALEYF M + + ++F G
Sbjct: 280 GSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGV 339
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+AC+H GL+ +G +YFD+M Y++ P++EH+GC+
Sbjct: 340 LSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCL 375
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 130 WTALLNGFVKR-DYFEEALE-YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
W AL+ + D + A+ Y R+++ V D T VL CA + L G +H
Sbjct: 94 WNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQ 153
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
+ K F BV + N+L+ Y+ ++FA+ VF RM +R+LVSWN +I F G A
Sbjct: 154 ILKLGFDSBVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAA 213
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
L F MQK F+ D + AC+ G + G+
Sbjct: 214 LNLFGEMQK-FFEPDGYTIQSIANACAGMGSLSLGM 248
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 161/285 (56%), Gaps = 26/285 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTN--PSHITFVTLLSGCADFPS-------- 95
V W + IS + +G EA LE + + TN P T VT++S CA S
Sbjct: 187 VSWNAMISGYVETGNYKEA-LELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVH 245
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+N+ + AL+D+Y+KFG ++ A +FD + D W L+ G+ + ++
Sbjct: 246 SWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYK 305
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ--DFKDNVRVCNT 202
EAL F+ M SG P+ +T++S+L CA++ + IG W+H Y+ K+ NV T
Sbjct: 306 EALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQT 365
Query: 203 -LMDVYSRFGCIEFARQVFQR-MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
L+D+Y++ G I+ A+QVF M R+L +WN++I GFA++G A + F+ M+ +
Sbjct: 366 SLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIE 425
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSH+G+++ G F M + Y ++P++EH+GC+
Sbjct: 426 PDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCM 470
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 114/195 (58%), Gaps = 4/195 (2%)
Query: 92 DFPSNNVMVS-TALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
D S+ +VS TAL+ Y G ++ A +FD + G D W A+++G+V+ ++EALE
Sbjct: 148 DISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALE 207
Query: 149 YFR-VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
F+ +M ++ V PD T+++V++ CA ++ +G +H ++ F N+++ N L+D+Y
Sbjct: 208 LFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLY 267
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
S+FG +E A ++F + + ++SWN++I G+ EAL F M + ++V+
Sbjct: 268 SKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTML 327
Query: 268 GALTACSHAGLIEDG 282
L AC+H G I+ G
Sbjct: 328 SILPACAHLGAIDIG 342
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 6/184 (3%)
Query: 117 ATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A VFD ++ + W + G AL+ + VM G+ PD T +L CA
Sbjct: 42 AISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAK 101
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ G +H +V K F ++ V +L+ +Y++ G +E AR+VF R +VS+ ++
Sbjct: 102 SKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTAL 161
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I G+ G++ A + F+ + D VS+ ++ G ++ L+ F M +
Sbjct: 162 IAGYVSRGYIESAQKLFD----EIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTN 217
Query: 295 VSPQ 298
V P
Sbjct: 218 VRPD 221
>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
Length = 515
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 144/282 (51%), Gaps = 20/282 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
+TV WT+ I+ + +G LEA R G P T V +L+ CA
Sbjct: 5 STVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETGEAVW 64
Query: 95 ---------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYF 143
+ +V V+TA LD+Y K G M+ A VFD M+ D W A++ G+ +
Sbjct: 65 AAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHP 124
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EAL+ F MQ+ G +PD T++ L+ C + L +G V + N + L
Sbjct: 125 REALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTAL 184
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G A VFQ+M +R ++ WN++I+G + G A M+K K ++
Sbjct: 185 IDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLND 244
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L +C+H GL+ DG QYF M +YR+SP+IEH+GC+
Sbjct: 245 NTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCM 286
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 159/281 (56%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WT+ IS + + G EA F M + GT P+ TF T+L+ C
Sbjct: 544 VSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSL 603
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+++ V ++LLDMYAK G++ A VFD + D TA+++G+ + EEA
Sbjct: 604 VIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEA 663
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ FR +Q G+ +Y+T SVL + + L G +H +V + V + N+L+D+
Sbjct: 664 LDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDM 723
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVS 265
YS+ G + ++R++F M +RT++SWN+++VG++ +G EA+E F LM ++ K D V+
Sbjct: 724 YSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVT 783
Query: 266 FTGALTACSHAGLIEDGLQ-YFDIMKKIYRVSPQIEHHGCI 305
F L+ CSH G+ + GL+ +++++ + P+IEH+GC+
Sbjct: 784 FLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCV 824
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 108/201 (53%), Gaps = 5/201 (2%)
Query: 86 LLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
++ C + P V + T L+ +Y K + A V D M R WTA+++G+ +R Y
Sbjct: 503 MIKTCYEPP---VYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYA 559
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EAL F M +SG P+ T +VL C + +G +H V K F+ ++ V ++L
Sbjct: 560 SEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSL 619
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G I AR+VF + +R +VS +II G+A G EAL+ F +Q+ +++
Sbjct: 620 LDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNY 679
Query: 264 VSFTGALTACSHAGLIEDGLQ 284
V++ LTA S ++ G Q
Sbjct: 680 VTYASVLTALSGLAALDHGRQ 700
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 71/139 (51%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M I G+E ++ SVL C + + G +H ++ K ++ V + L+ +Y++ C
Sbjct: 468 MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 527
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+ AR+V M +R +VSW ++I G++ G+ EAL F M +E +F LT+
Sbjct: 528 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 587
Query: 273 CSHAGLIEDGLQYFDIMKK 291
C+ + + G Q ++ K
Sbjct: 588 CTSSSGFQLGRQIHSLVIK 606
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 155/286 (54%), Gaps = 19/286 (6%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---- 94
K + V WT I + + I +A F M+ G P IT++ +++ CA
Sbjct: 323 KMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSL 382
Query: 95 -------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
+++V TAL+ MYAK G + A VFD M D W+A++ +V+
Sbjct: 383 AREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVE 442
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
EEA E F +M+ + VEPD +T I++LN C ++ L +G+ ++ K D ++ V
Sbjct: 443 NGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPV 502
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
N L+++ + G IE AR +F+ M +R +V+WN +I G++++G EAL+ F+ M K F
Sbjct: 503 GNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERF 562
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ + V+F G L+ACS AG +E+G ++F + + P +E +GC+
Sbjct: 563 RPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCM 608
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 122/250 (48%), Gaps = 19/250 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---------DFP 94
T V W + I+ + + G + EA F +M PS ITF+ +L C+ +F
Sbjct: 126 TVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFH 185
Query: 95 SNNVMVS--------TALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+ + V TAL+ MY K G MD A VFD + R + ++ G+ K E
Sbjct: 186 AQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGE 245
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+A + F MQ G +P+ ++ +S+L+ C+ L G +H D+VRV L+
Sbjct: 246 KAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALI 305
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+Y G IE AR+VF +M R +VSW +I G+A N + +A F MQ+ + D +
Sbjct: 306 RMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRI 365
Query: 265 SFTGALTACS 274
++ + AC+
Sbjct: 366 TYIHIINACA 375
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 2/180 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
N+ L+ +++ G M A FD + W A++ G+ + + +EA FR M
Sbjct: 95 NIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMV 154
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+EP +T + VL+ C++ L +G H V K F + R+ L+ +Y + G ++
Sbjct: 155 DEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMD 214
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
ARQVF ++KR + ++N +I G+A +G +A + F MQ+ FK + +SF L CS
Sbjct: 215 GARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCS 274
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 68/136 (50%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D T + + C +R G+G + ++ + + N+ NTL+ ++S G + ARQ F
Sbjct: 60 DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
+ +T+V+WN+II G+A G V EA F M + ++F L ACS ++
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179
Query: 281 DGLQYFDIMKKIYRVS 296
G ++ + K+ VS
Sbjct: 180 LGKEFHAQVIKVGFVS 195
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 129/211 (61%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V A++ YAK G +D A +F+ M R WTA++ G+ + D EA+ FR MQ
Sbjct: 204 DVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQ 263
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ VEPD + +++ L+ CA++ L +G W+H Y+ K V + N L+D+Y++ G IE
Sbjct: 264 LEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIE 323
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +VF+ M +++++W S+I G A++G EALE F+ M++ K +E++F L+AC
Sbjct: 324 KALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACC 383
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H GL+E G YF M Y + P+I+H+GC+
Sbjct: 384 HVGLVEMGRWYFKCMGTKYGIKPKIQHYGCM 414
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 104/219 (47%), Gaps = 21/219 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
+ WT+ I+ + + EA F RM+L P I + LS CA
Sbjct: 236 VISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHN 295
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
S V ++ AL+DMYAK G+++ A VF M + WT++++G E
Sbjct: 296 YIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGRE 355
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV-PKQDFKDNVRVCNTLM 204
ALE F M+ + ++P+ +T +++L+ C +V + +G W + + K K ++ ++
Sbjct: 356 ALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMI 415
Query: 205 DVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNG 242
D+ R G ++ A+++ + M + W S++ ++G
Sbjct: 416 DLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHG 454
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
F+D V N ++ Y++ G ++ AR +F+RM +R ++SW ++I G+A EA+ F
Sbjct: 202 FRD-VAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFR 260
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
MQ + DE++ AL+AC+H G +E G
Sbjct: 261 RMQLEEVEPDEIAMLAALSACAHLGALELG 290
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 154/311 (49%), Gaps = 53/311 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---------------- 91
WT+ I + G +E+ L + MR G P TF LL C+
Sbjct: 107 WTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTI 166
Query: 92 -------DFPSNNVMVS--------------------------TALLDMYAKFGRMDLAT 118
D N ++ T+L+ YAK G M+ A+
Sbjct: 167 LIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAAS 226
Query: 119 VVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR 176
+FD + D WTA++ G+ + EALE F MQ +GV+ D +T++ V++ CA +
Sbjct: 227 ELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLG 286
Query: 177 TLGIGLWMHRYVPKQDF--KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
W+ + F NV V + L+D+Y++ G +E A +VF+RM +R + S++S+
Sbjct: 287 AAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSM 346
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
IVGFA++G G A+E F+ M K K + V+F G LTACSHAG++E G Q F +M++ +
Sbjct: 347 IVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHG 406
Query: 295 VSPQIEHHGCI 305
V+P +H+ C+
Sbjct: 407 VAPSEDHYACM 417
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 34/206 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF------------ 93
V WT+ ++ + ++ EA F RM+ G +T V ++S CA
Sbjct: 238 VAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDV 297
Query: 94 -------PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
P++NV+V +AL+DMYAK G ++ A VF+ M R +++++ GF
Sbjct: 298 AEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAG 357
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-------HRYVPKQDFKDNV 197
A+E F M + ++P+ +T I VL C++ + G + H P +D
Sbjct: 358 AAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHY--- 414
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRM 223
++D+ R G +E A + + M
Sbjct: 415 ---ACMVDLLGRAGRLEEALNLVKMM 437
>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
Length = 645
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 144/281 (51%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
+TV WT+ I+ + +G + EA G P T V +L+ CA
Sbjct: 136 STVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVW 195
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ +V V+TA +D+Y K G M A VFD MR D W A++ G+ +
Sbjct: 196 RAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPR 255
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL+ F MQ G++PD + L+ C + L +G R V +F DN + L+
Sbjct: 256 EALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALI 315
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G A VFQ+M K+ ++ WN++I+G + G A M+K K ++
Sbjct: 316 DMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDN 375
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L +C+H GLI+DG +YF M K+Y +SP+IEH+GC+
Sbjct: 376 TFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCM 416
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 160 PDYLTIISVLNVCANV-RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
P +LTI L + + L G +H K N V +L+ +Y++ G + A++
Sbjct: 68 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 127
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
VF M + V W ++I + G + EA+ + D + LTAC+
Sbjct: 128 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACA 183
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 153/310 (49%), Gaps = 50/310 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------DF 93
V W S I + R E + F MR+ +T V ++ C ++
Sbjct: 862 VSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEY 921
Query: 94 PSNN-----VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF------------------- 129
N V + L+DMY + +DLA VFD MR +
Sbjct: 922 IEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAA 981
Query: 130 --------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
WT++++ + + F +A+ F+ M ++ V+PD +T+ SVL+ CA++
Sbjct: 982 RKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHI 1041
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
L +G +H Y+ K D ++ V N L+D+Y + G +E VF+ M KR VSW S+I
Sbjct: 1042 GALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVI 1101
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV 295
G AVNG AL F+LM + + +F G L AC+HAG+++ GL+YF+ M+++Y +
Sbjct: 1102 AGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGL 1161
Query: 296 SPQIEHHGCI 305
+P+++H+GC+
Sbjct: 1162 TPEMKHYGCV 1171
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 136/308 (44%), Gaps = 56/308 (18%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRM---RLYGTNPSHITFVTLLSGCADFPS----- 95
T W I ++ +EA + M L+G N +T+ LL CA +
Sbjct: 760 TLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNN---LTYPFLLKACARISNVSCTT 816
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+++ VS AL+ YA F + A VFD M D W +L+ G+ +
Sbjct: 817 VHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRR 876
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+ E L F M+++ V+ D +T++ V+ C + G+ M Y+ + + +V + NT
Sbjct: 877 YSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNT 936
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV------------------ 244
L+D+Y R ++ AR+VF RM R +VSWN++I+G+ G +
Sbjct: 937 LIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISW 996
Query: 245 -------------GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
G+A+ F M K DE++ L+AC+H G ++ G + ++K
Sbjct: 997 TSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRK 1056
Query: 292 IYRVSPQI 299
Y V+ I
Sbjct: 1057 -YDVNADI 1063
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 155/283 (54%), Gaps = 22/283 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFP--------- 94
+V W S I+ + ++GC EA F M R G P ++ V+LL C +
Sbjct: 188 SVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVE 247
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ N + +AL+ MYAK G ++ A +FD M D W A+++G+ + +
Sbjct: 248 GFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMAD 307
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA+ F M+ V + +T+ +VL+ CA + L +G + Y ++ F+ ++ V L+
Sbjct: 308 EAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALI 367
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM--QKGVFKTD 262
D+Y++ G ++ A++VF+ M ++ SWN++I A +G EAL F M + G + +
Sbjct: 368 DMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPN 427
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+++F G L+AC HAGL+++G + FD+M ++ + P+IEH+ C+
Sbjct: 428 DITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCM 470
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 120/237 (50%), Gaps = 20/237 (8%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAK 110
F RM P + TF CA+ S ++ + +L+ YA+
Sbjct: 110 FHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYAR 169
Query: 111 FGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM-QISGVEPDYLTIIS 167
G + A VFD + R W +++ G+ K EA+E FR M + G EPD ++++S
Sbjct: 170 CGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVS 229
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
+L C + L +G W+ +V ++ N + + L+ +Y++ G +E AR++F M R
Sbjct: 230 LLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARD 289
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+++WN++I G+A NG EA+ F+ M++ ++++ T L+AC+ G ++ G Q
Sbjct: 290 VITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQ 346
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL F M + PD T CAN+ +L H + K + ++L+
Sbjct: 106 ALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLIT 165
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEV 264
Y+R G + AR+VF + R VSWNS+I G+A G EA+E F M ++ F+ DE+
Sbjct: 166 AYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEM 225
Query: 265 SFTGALTACSHAGLIEDG 282
S L AC G +E G
Sbjct: 226 SLVSLLGACGELGDLELG 243
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 127/215 (59%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P +++ TA+L YAK G +D A V+FD M D W +++G+ + EAL F
Sbjct: 132 MPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF 191
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R M + +P+ +T++SVL+ C + L G W+H Y+ + NV V L+D+YS+
Sbjct: 192 RRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKC 251
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G +E AR VF ++ + +V+WNS+IVG+A+ GF EAL+ F M + ++F G L
Sbjct: 252 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGIL 311
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+AC H+G + +G F+ MK Y + P+IEH+GC+
Sbjct: 312 SACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCM 346
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 94/208 (45%), Gaps = 37/208 (17%)
Query: 108 YAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
YA GR+D + +F + FWTA+++G R E+AL ++ M GVEP+ T
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
S+L +C + G +H K F ++ V L+DVY+R G + A+Q+F M +
Sbjct: 79 SSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 134
Query: 226 RTLVS-------------------------------WNSIIVGFAVNGFVGEALEYFNLM 254
++LVS WN +I G+ NG EAL F M
Sbjct: 135 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 194
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDG 282
K K +EV+ L+AC G +E G
Sbjct: 195 LKAKAKPNEVTVLSVLSACGQLGALESG 222
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 128/212 (60%), Gaps = 5/212 (2%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
+ V +LL +YA G + A VFD M D W +++NGF + EEAL + M
Sbjct: 23 IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS 82
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
G++PD TI+S+L+ CA + L +G +H Y+ K N+ N L+D+Y+R G +E
Sbjct: 83 KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 142
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ--KGVFKTDEVSFTGALTAC 273
A+ +F M + VSW S+IVG AVNGF EA+E F M+ +G+ E++F G L AC
Sbjct: 143 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC-EITFVGILYAC 201
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH G++++G +YF M++ Y++ P+IEH GC+
Sbjct: 202 SHCGMVKEGFEYFRRMREEYKIEPRIEHFGCM 233
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 24/220 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I+ +G EA +T M G P T V+LLS CA +
Sbjct: 55 VAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVY 114
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N+ S LLD+YA+ GR++ A +FD M + WT+L+ G + +EA
Sbjct: 115 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 174
Query: 147 LEYFRVMQ-ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN--TL 203
+E F+ M+ G+ P +T + +L C++ + G R + ++++K R+ + +
Sbjct: 175 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRM-REEYKIEPRIEHFGCM 233
Query: 204 MDVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNG 242
+D+ +R G ++ A + + M + +V W +++ V+G
Sbjct: 234 VDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 273
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
A+VR +G +H V + F + V N+L+ +Y+ G + A +VF +M ++ LV+WN
Sbjct: 2 ADVR---LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 58
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
S+I GFA NG EAL + M K D + L+AC+ G + G + M K+
Sbjct: 59 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV 118
>gi|5059312|gb|AAD38962.1|AF149040_1 hypothetical protein-1 [Prunus dulcis]
Length = 205
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 118/181 (65%)
Query: 125 RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM 184
R C WTA+++G+ + EAL F M+ +G +PD +T++S+++ C+ L +G W+
Sbjct: 4 RTCVSWTAMISGYADKGDLNEALRLFHAMEAAGEKPDLVTVLSLVSGCSQTGALELGKWI 63
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
H Y +D++ VCN L+D+Y++ G + AR++ + RT+VSW ++I GFA+NG
Sbjct: 64 HNYAFSNGLRDSIVVCNALIDMYAKCGNVNSARELSYALPVRTVVSWTTMIAGFALNGNY 123
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
EAL+ F LM K + ++F L AC+HAGL+E G+++FD+MKK+Y+++P ++H C
Sbjct: 124 EEALDLFCLMVDLDLKPNHLTFLAILQACTHAGLLEKGMEFFDMMKKVYKINPGVDHFSC 183
Query: 305 I 305
+
Sbjct: 184 M 184
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 19/158 (12%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T V WT+ IS + G + EA F M G P +T ++L+SGC+ +
Sbjct: 5 TCVSWTAMISGYADKGDLNEALRLFHAMEAAGEKPDLVTVLSLVSGCSQTGALELGKWIH 64
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
++++V AL+DMYAK G ++ A + + R WT ++ GF +E
Sbjct: 65 NYAFSNGLRDSIVVCNALIDMYAKCGNVNSARELSYALPVRTVVSWTTMIAGFALNGNYE 124
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182
EAL+ F +M ++P++LT +++L C + L G+
Sbjct: 125 EALDLFCLMVDLDLKPNHLTFLAILQACTHAGLLEKGM 162
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M RT VSW ++I G+A G + EAL F+ M+ K D V+ ++ CS G +E G
Sbjct: 1 MSNRTCVSWTAMISGYADKGDLNEALRLFHAMEAAGEKPDLVTVLSLVSGCSQTGALELG 60
>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 713
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 153/280 (54%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
++ W++ ++ + ++G LEA F+RM G PS T V +L+ C+D
Sbjct: 276 SITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHS 335
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
++ +TAL+DMYAK G + A FD + R WT+L++G+V+ EE
Sbjct: 336 FLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEE 395
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL +R M+ +G+ P+ T+ SVL C+++ TL +G +H + K F V + + L
Sbjct: 396 ALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALST 455
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G +E VF+R + +VSWN++I G + NG EALE F M + D+V+
Sbjct: 456 MYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDVT 515
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F ++ACSH G +E G YF +M + + P+++H+ C+
Sbjct: 516 FVNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDHYACM 555
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 9/197 (4%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQI 155
++ V T+L+ MY K G L V + FW ++R + ++ + +
Sbjct: 153 GDIYVDTSLVGMYCKAGLKYLYMVYYG------FWLCYKKDVLRRQ-LKSSICFLEEKEK 205
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
+ DY+ +VL+ A +G+G +H K V + N L+ +YS+ +
Sbjct: 206 ES-DSDYV-FTAVLSSLAATVYVGLGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNE 263
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
A ++F R ++W++++ G++ NG EA++ F+ M K E + G L ACS
Sbjct: 264 ACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSD 323
Query: 276 AGLIEDGLQYFDIMKKI 292
+ +G Q + K+
Sbjct: 324 ICYLVEGKQLHSFLLKL 340
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 45/93 (48%)
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T++ L + R L G +H + + + N L++ Y++ G + A +F +
Sbjct: 18 TLLKALTHHSQHRNLVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNAI 77
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
+ +VSWNS+I G++ NG + + L ++
Sbjct: 78 ICKDVVSWNSLITGYSQNGGISSSHTVMQLFRE 110
>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
Length = 1124
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 144/281 (51%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
+TV WT+ I+ + +G + EA G P T V +L+ CA
Sbjct: 615 STVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVW 674
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ +V V+TA +D+Y K G M A VFD MR D W A++ G+ +
Sbjct: 675 RAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPR 734
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL+ F MQ G++PD + L+ C + L +G R V +F DN + L+
Sbjct: 735 EALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALI 794
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G A VFQ+M K+ ++ WN++I+G + G A M+K K ++
Sbjct: 795 DMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDN 854
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L +C+H GLI+DG +YF M K+Y +SP+IEH+GC+
Sbjct: 855 TFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCM 895
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Query: 160 PDYLTIISVLNVCANV-RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
P +LTI L + + L G +H K N V +L+ +Y++ G + A++
Sbjct: 547 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 606
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF M + V W ++I + G + EA+ + D + LTAC+
Sbjct: 607 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 666
Query: 279 IEDG 282
+ G
Sbjct: 667 LATG 670
>gi|115480209|ref|NP_001063698.1| Os09g0520300 [Oryza sativa Japonica Group]
gi|113631931|dbj|BAF25612.1| Os09g0520300 [Oryza sativa Japonica Group]
Length = 657
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 151/293 (51%), Gaps = 31/293 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------N 96
+ V W + + H RSG + F +M + G T L+ CA+ P +
Sbjct: 220 SNVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTCDDATLCILVDACAELPDPSTGFAIH 279
Query: 97 NVMVST---------------------ALLDMYAKFGRMDLATVVFDVMRGCDF--WTAL 133
V+V + +L+D +A+FG ++ A ++F+ + WTA+
Sbjct: 280 KVVVQSGWNGIPEIFESMKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAM 339
Query: 134 LNGFVKRDYFEEALEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
+ GF + EAL +F +++ ++PD T +VL+ CA+ L G +H +
Sbjct: 340 IGGFARNSLTSEALAHFVKMLTQEYIQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGG 399
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
F + V N L+D+Y++ G +E A VF +H++ LVSWN+++ GFA+NG EALE +
Sbjct: 400 FASYLYVANNLVDMYAKCGDVEGANNVFDAIHQKDLVSWNTMLFGFAINGLPKEALEVYE 459
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+M DEV+FTG LTACSH+GL+E G +F+ M ++ V P+ EH C+
Sbjct: 460 IMTYHNVSPDEVTFTGLLTACSHSGLLEQGRAFFESMMSVHGVQPKPEHLSCV 512
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
+L+ + G +E A ++F M ++ V+WN++++G + +G + L FN M
Sbjct: 195 SLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTC 254
Query: 262 DEVSFTGALTACSH 275
D+ + + AC+
Sbjct: 255 DDATLCILVDACAE 268
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 131/215 (60%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P + + ++ AK G +D A F M + WT++++GFV+ EA++ F
Sbjct: 71 MPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLF 130
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
++ V P+ +T++SVL CA++ L +G +H Y K FK NV VCNTL+D+Y +
Sbjct: 131 MKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKC 190
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
GC+E AR+VF M +RT+VSW+++I G A++G EAL F+ M K K + V+F G L
Sbjct: 191 GCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLL 250
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSH GLI++G ++F M Y V PQIEH+GC+
Sbjct: 251 HACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCV 285
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 20/206 (9%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
T V W++ I+ G EA F+ M G P+ +TF+ LL C+
Sbjct: 207 TVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHM---------G 257
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
L+D +F T + V+ + + +++ F + EEA E+ M I +P+ +
Sbjct: 258 LIDEGRRF--FASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPI---KPNGV 312
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
++L C + + + +++ + D D V + ++Y+ E A +V +
Sbjct: 313 VWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYV--VISNIYAEAERWEDAARVRKL 370
Query: 223 MHKRTL---VSWNSIIVGFAVNGFVG 245
M R + W+SI V V+ FV
Sbjct: 371 MKDRGVKKTSGWSSITVNGVVHEFVA 396
>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
Length = 609
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 129/212 (60%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVM 153
+++ V L+ MY+K G + A +FD M G WTA++ G ++ +EA+ F M
Sbjct: 291 SDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAM 350
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ G +PD +TIIS+++ C L +G W+ Y KDN+ VCN L+DVY++ G +
Sbjct: 351 EAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSM 410
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ AR++F M +++LVSW ++I G A+NG EAL F M + K + ++F L AC
Sbjct: 411 DNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQAC 470
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+HAG +E G + F++M K+Y+++P ++H+ C+
Sbjct: 471 NHAGFLEKGWECFNLMTKVYKINPGLDHYSCM 502
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 119/252 (47%), Gaps = 21/252 (8%)
Query: 32 SIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA 91
+ Q+ N S + T QW SSI+ G +A L F +M+ G P+++TF ++ C+
Sbjct: 6 ATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACS 65
Query: 92 DFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTA 132
+ ++ V T+++DMY K ++ A +F M R W +
Sbjct: 66 KLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNS 125
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
++ GF + + + + F M I G+ D +T+I + + +++ L + +H + K
Sbjct: 126 MIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIG 185
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEY 250
+V V NT + Y++ G A VF + K +T VSWNS+I G+A +A+ +
Sbjct: 186 IDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGF 245
Query: 251 FNLMQKGVFKTD 262
F M G F+ D
Sbjct: 246 FKKMLXGGFRAD 257
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 73/139 (52%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W + + V + Y +AL FR M+ +G+EP+ LT SV C+ + L +H +V
Sbjct: 22 WNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVV 81
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
K F+ ++ V +++D+Y + + FA +F RM R + SWNS+I GFA GFV +
Sbjct: 82 KSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVDRVVS 141
Query: 250 YFNLMQKGVFKTDEVSFTG 268
F M + D V+ G
Sbjct: 142 LFCEMGIEGIRADSVTVIG 160
>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
Length = 1100
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 144/281 (51%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
+TV WT+ I+ + +G + EA G P T V +L+ CA
Sbjct: 591 STVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVW 650
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ +V V+TA +D+Y K G M A VFD MR D W A++ G+ +
Sbjct: 651 RAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPR 710
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL+ F MQ G++PD + L+ C + L +G R V +F DN + L+
Sbjct: 711 EALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALI 770
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G A VFQ+M K+ ++ WN++I+G + G A M+K K ++
Sbjct: 771 DMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDN 830
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L +C+H GLI+DG +YF M K+Y +SP+IEH+GC+
Sbjct: 831 TFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCM 871
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Query: 160 PDYLTIISVLNVCANV-RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
P +LTI L + + L G +H K N V +L+ +Y++ G + A++
Sbjct: 523 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 582
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF M + V W ++I + G + EA+ + D + LTAC+
Sbjct: 583 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 642
Query: 279 IEDG 282
+ G
Sbjct: 643 LATG 646
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 136/216 (62%), Gaps = 2/216 (0%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEY 149
+ P + + T ++ YAK G ++ A ++FD M+ W ++++G+V+ + F+E L+
Sbjct: 165 EMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQM 224
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
FR+MQ +G+EPD ++S+L CA++ + IG+W+HRY+ + +VR+ L+D+Y++
Sbjct: 225 FRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAK 284
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G ++ A+++F M +R + WN++I G A+NG AL F+ M+K K D+++F
Sbjct: 285 CGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAI 344
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
TACS++G+ + ++ + M +Y + P+ EH+GCI
Sbjct: 345 FTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCI 380
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 34/189 (17%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
++ FV + ++ + M +G+ PD T+ VL CA +++ +G H K
Sbjct: 76 MIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLG 135
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA------------- 239
F ++ V NTL+ +YS FG + AR +F M T VSW +I G+A
Sbjct: 136 FWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFD 195
Query: 240 -------------VNGFV-----GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
++G+V E L+ F LMQ + DE L AC+H G +E
Sbjct: 196 EAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEI 255
Query: 282 GL---QYFD 287
G+ +Y D
Sbjct: 256 GVWVHRYLD 264
>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
Length = 624
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 151/276 (54%), Gaps = 20/276 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V WTS I+ + ++ EA M P+ TF +LL + +
Sbjct: 118 VSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHAL 177
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+V V +ALLDMYA+ G+MD+AT VFD + + W AL++GF ++ E A
Sbjct: 178 AVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETA 237
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F MQ +G E + T S+ + A + L G W+H ++ K K V NT++D+
Sbjct: 238 LMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDM 297
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G + AR+VF+R+ + LV+WNS++ FA G EA+ +F M+K ++++F
Sbjct: 298 YAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITF 357
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
LTACSH GL+++G YFD++K+ Y + P+IEH+
Sbjct: 358 LCILTACSHGGLVKEGKHYFDMIKE-YNLEPEIEHY 392
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 2/190 (1%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+ + +L+ +Y K G + A VFD MR D WT+L+ G+ + D EA+
Sbjct: 83 EGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPG 142
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M +P+ T S+L GIG +H K D+ ++V V + L+D+Y+R G
Sbjct: 143 MLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGK 202
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ A VF ++ + VSWN++I GFA G AL F MQ+ F+ +++ +
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSG 262
Query: 273 CSHAGLIEDG 282
+ G +E G
Sbjct: 263 LAGIGALEQG 272
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
+ + CA + L +H ++ F+ + + N+L+ +Y + G + A +VF +M K+
Sbjct: 56 AFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKK 115
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
+VSW S+I G+A N EA+ M KG FK + +F L A
Sbjct: 116 DMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAG 163
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 150/277 (54%), Gaps = 20/277 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------ 92
V W S I R G + A F M +++ T+L G A
Sbjct: 188 VVTWNSMIGGLVRCGELEGACKLFDEM----PERDMVSWNTMLDGYAKAGEMDRAFELFE 243
Query: 93 -FPSNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEY 149
P N++ + ++ Y+K G MD+A V+FD + WT ++ G+ ++ + EA E
Sbjct: 244 RMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATEL 303
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
+ M+ +G+ PD +IS+L CA LG+G +H + + F+ +V N +D+Y++
Sbjct: 304 YGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAK 363
Query: 210 FGCIEFARQVFQ-RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
GC++ A VF M K+ +VSWNS+I GFA++G +ALE F+ M F+ D +F G
Sbjct: 364 CGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVG 423
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L AC+HAGL+ +G +YF M+K+Y + PQ+EH+GC+
Sbjct: 424 LLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCM 460
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F MQ +G+ PD T +L C +L + +H +V K F ++ V N+L+D YSR
Sbjct: 108 FFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSR 167
Query: 210 FGC--IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
G ++ A +F M +R +V+WNS+I G G + A + F+ M + D VS+
Sbjct: 168 CGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMP----ERDMVSWN 223
Query: 268 GALTACSHAGLIEDGLQYFDIMKK 291
L + AG ++ + F+ M +
Sbjct: 224 TMLDGYAKAGEMDRAFELFERMPQ 247
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 151/278 (54%), Gaps = 22/278 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WT+ I+ + + +A L M G P+ T +LL + S
Sbjct: 82 VTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLH 141
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFE 144
+NV VS A+LDMYA+ ++ A ++FDVM + W AL+ G+ ++ +
Sbjct: 142 GLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGD 201
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+A F M V+P + T SVL CA++ +L G W+H + K K V NTL+
Sbjct: 202 KAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLL 261
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G IE A++VF R+ KR +VSWNS++ G++ +G AL+ F M + +++
Sbjct: 262 DMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDI 321
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
+F LTACSHAGL+++G YFD+MKK Y V PQI H+
Sbjct: 322 TFLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQISHY 358
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 103/200 (51%), Gaps = 4/200 (2%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+++++ LL++YAK G + A +FD M D WTAL+ G+ + D ++AL M
Sbjct: 48 DDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEM 107
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGI--GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
G++P+ T+ S+L + V + + G +H + + NV V ++D+Y+R
Sbjct: 108 LRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCH 167
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
+E A+ +F M + VSWN++I G+A G +A F+ M + K +++ L
Sbjct: 168 HLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLC 227
Query: 272 ACSHAGLIEDGLQYFDIMKK 291
AC+ G +E G +M K
Sbjct: 228 ACASMGSLEQGKWVHALMIK 247
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 60/111 (54%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
++L C ++ L G +H + F+D++ + NTL+++Y++ G + +AR++F M R
Sbjct: 20 TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+V+W ++I G++ + +AL M + K ++ + L A S G
Sbjct: 80 DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVG 130
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 138/237 (58%), Gaps = 4/237 (1%)
Query: 71 MRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCD 128
+R+Y + SHI+ L + NV + A+L YAK M A +FD M R
Sbjct: 152 IRMYSS--SHISDARKLFDGIPLTARNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLI 209
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
WTAL++G+ + +A+ FR MQ+ V PD +T+++VL+ CA + L +G W+ Y+
Sbjct: 210 SWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGALELGEWIRNYI 269
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
NV + N L+D+Y++ G I+ A +F+ M +T+V+W ++I G A++G +AL
Sbjct: 270 DIHGLHRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVTWTTMIAGLALHGLGTQAL 329
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
E F+ M++ K +E++F L+ACSH GL++ +F M+ Y + P+IEH+GC+
Sbjct: 330 EMFSRMERDRVKPNEITFIAVLSACSHVGLVQLARSFFTNMRSRYTIQPKIEHYGCM 386
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 157/285 (55%), Gaps = 21/285 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V W + IS + +G EA F M P T VT++S CA S
Sbjct: 228 VKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQ 287
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ + +L+D+Y+K G ++ A +F+ + D W L+ G+ +
Sbjct: 288 VHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNL 347
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVC 200
++EAL F+ M SG P+ +T++S+L CA++ + IG W+H Y+ K + + +
Sbjct: 348 YKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLR 407
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+L+D+Y++ G IE A QVF + ++L SWN++I GFA++G A + F+ M+K +
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIE 467
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACS +G+++ G F M + Y+++P++EH+GC+
Sbjct: 468 PDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCM 512
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 110/191 (57%), Gaps = 2/191 (1%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P +V+ TAL+ YA G ++ A +FD + D W A+++G+ + ++EALE F+
Sbjct: 196 PHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M + + PD T+++V++ CA ++ +G +H ++ F N+++ N+LMD+YS+ G
Sbjct: 256 EMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCG 315
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
+E A +F+ + + ++SWN++I G+ EAL F M + + ++V+ L
Sbjct: 316 ELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILP 375
Query: 272 ACSHAGLIEDG 282
AC+H G I+ G
Sbjct: 376 ACAHLGAIDIG 386
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 33/207 (15%)
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + A VF+ ++ + W + G AL+ + M G+ P+ T +
Sbjct: 81 FDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFL 140
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L CA + G +H +V K + ++ V +L+ VY + G +E AR+VF R R +
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDV 200
Query: 229 VS-------------------------------WNSIIVGFAVNGFVGEALEYFNLMQKG 257
VS WN++I G+A G EALE F M K
Sbjct: 201 VSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKT 260
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ DE + ++AC+ +G IE G Q
Sbjct: 261 NIRPDESTMVTVVSACAQSGSIELGRQ 287
>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 651
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 153/285 (53%), Gaps = 19/285 (6%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---- 95
S + + V W S I+ + ++A + M G +P T + LLS C +
Sbjct: 217 SGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHG 276
Query: 96 -------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKR 140
++V V L+ MY+K G + A +F+ M + C WT +++ + ++
Sbjct: 277 LLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEK 336
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
Y EA+ F M+ +G +PD +T++++++ C L +G W+ Y KDNV VC
Sbjct: 337 GYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNGLKDNVVVC 396
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N L+D+Y++ G A+++F M RT+VSW ++I A+NG V +ALE F +M + K
Sbjct: 397 NALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFFMMLEMGMK 456
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ ++F L AC+H GL+E GL+ F++M + Y ++P I+H+ C+
Sbjct: 457 PNHITFLAVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCM 501
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 119/261 (45%), Gaps = 21/261 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
T W S+ G A + F +M+ G P++ TF +L CA
Sbjct: 17 TLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIH 76
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+N+ V TA +DMY K GR++ A VF M R W A+L GF + + +
Sbjct: 77 AHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLD 136
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
R M++SG+ PD +T++ +++ V++L ++ + + +V V NTL+
Sbjct: 137 RLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLI 196
Query: 205 DVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
YS+ G + A +F ++ R++VSWNS+I +A +A+ + M G F D
Sbjct: 197 AAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPD 256
Query: 263 EVSFTGALTACSHAGLIEDGL 283
+ L++C + GL
Sbjct: 257 ISTILNLLSSCMQPKALFHGL 277
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 18/151 (11%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
T V WT+ I+ +G + +A F M G P+HITF+ +L CA + +V
Sbjct: 423 TVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACA----HGGLVERG 478
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
L ++ T + + G D ++ +++ ++ + EALE + M EPD
Sbjct: 479 L-------ECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMPF---EPDSG 528
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFK 194
++L+ C L + M +YV +Q F+
Sbjct: 529 IWSALLSAC----KLHGKMEMGKYVSEQLFE 555
>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 149/282 (52%), Gaps = 18/282 (6%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------- 91
K + V W I RSG ++ A F + N +T+ ++ G A
Sbjct: 48 KMSTRNAVSWIEMIDGFARSGDMVAARRTFNEVPFELKNV--VTWTVMIDGYASKGEMEA 105
Query: 92 ------DFPSNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYF 143
D P N V ++++ Y K G + A +FD +R W +L+ G+ + +
Sbjct: 106 ARLLFEDMPQRNFFVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFC 165
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EEAL+ F MQ G EPD +T++ VL+ CA + L +G +H+ + + K N V N L
Sbjct: 166 EEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNAL 225
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G + AR +F+RM + WNS+I GFAV+G EALE+F M++ K DE
Sbjct: 226 VDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDE 285
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++F L+AC H G +E GL+ F M++ Y +S I+H+GC+
Sbjct: 286 ITFLSVLSACVHGGFVEVGLEIFSKMER-YGLSASIKHYGCL 326
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 100/192 (52%), Gaps = 8/192 (4%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P NV+ A++ Y K G M A+V+FD M R W +++GF + A F
Sbjct: 18 MPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFARSGDMVAARRTF 77
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
++ + +T +++ A+ + + +P+++F V ++++ Y +
Sbjct: 78 N--EVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNF----FVWSSMISGYCKI 131
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G ++ AR +F R+ R LV+WNS+I G++ NGF EAL+ F MQ ++ DEV+ G L
Sbjct: 132 GNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVL 191
Query: 271 TACSHAGLIEDG 282
+AC+ L++ G
Sbjct: 192 SACAQLSLLDVG 203
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 19/197 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W S I + ++G EA F +M+ G P +T V +LS CA
Sbjct: 150 VNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKM 209
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N V AL+DMYAK G + A ++F+ M + W ++++GF +EA
Sbjct: 210 ICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEA 269
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE+F M+ S +PD +T +SVL+ C + + +GL + + + +++ L+D+
Sbjct: 270 LEFFGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEIFSKMERYGLSASIKHYGCLVDL 329
Query: 207 YSRFGCIEFARQVFQRM 223
R G I+ A + + M
Sbjct: 330 LGRAGRIQDAYHLIKSM 346
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 144/262 (54%), Gaps = 24/262 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V W + I+ + ++G + EA F M P NV+ A++
Sbjct: 292 VSWNTMIAGYVQNGSVKEAFKLFQIM----------------------PERNVISWNAVI 329
Query: 106 DMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
+A+ G+++ A +F M C+ W A++ G+ + E AL+ F MQ+ ++P+
Sbjct: 330 SGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTE 389
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T VL CA + L G H V + F+ +V V NTL+ +Y++ G IE AR+VF RM
Sbjct: 390 TFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRM 449
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
++ S +++IVG+A+NG E+LE F MQ K D V+F G L+AC HAGL+++G
Sbjct: 450 RQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGR 509
Query: 284 QYFDIMKKIYRVSPQIEHHGCI 305
QYFDIM + Y ++P +EH+GC+
Sbjct: 510 QYFDIMTRFYHITPAMEHYGCM 531
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 144/287 (50%), Gaps = 27/287 (9%)
Query: 30 QISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG 89
+I +TN K+ T + C+ G + EA M G P T+ +LL G
Sbjct: 14 RIKARTNTLKTKEGTGKGNDGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQG 73
Query: 90 CAD------------------FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDF 129
C + F ++ + L+ +Y K G + A VFD M +
Sbjct: 74 CLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVS 133
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
WTA++ + + ++ +EAL +F MQ G++P++ T S+L C ++ LG H +
Sbjct: 134 WTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLG---EFHDEIV 190
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
K F+ NV V N L+D+Y++ GCIEFAR++F +M +R +VSWN++I G+ NG + +AL+
Sbjct: 191 KGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALK 250
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
F + + K D +++ + + G +E+ ++ F+ M + VS
Sbjct: 251 LF----QEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVS 293
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 123/271 (45%), Gaps = 59/271 (21%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
+ V WT+ I+ + R EA F M+ G P+H TF ++L C D
Sbjct: 128 VKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGEFHD 187
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+NV V L+DMYAK G ++ A +FD M D W A++ G+V+ E+
Sbjct: 188 EIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIED 247
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL+ F+ +PK+D V NT+M
Sbjct: 248 ALKLFQ-----------------------------------EIPKRD----VITWNTMMA 268
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
Y++ G +E A ++F++M ++ LVSWN++I G+ NG V EA + F +M + + +S
Sbjct: 269 GYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMP----ERNVIS 324
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
+ ++ + G +E+ L+ F M + VS
Sbjct: 325 WNAVISGFAQNGQVEEALKLFKTMPECNVVS 355
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 148/266 (55%), Gaps = 19/266 (7%)
Query: 59 GCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVS 101
G ++ L + RM G S+ TF +++ CAD + +++ V
Sbjct: 168 GFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQ 227
Query: 102 TALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
AL+ +YAK M +A VFD M R W +L++G+ + +E++ F +M SG +
Sbjct: 228 AALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQ 287
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD TI+S+L+ C+ + L G W+H Y F NV + +L+++Y+R G + AR+V
Sbjct: 288 PDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREV 347
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F M +R +V+W ++I G+ ++G+ +A+E F M+ + + ++F L+AC+H+GLI
Sbjct: 348 FDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLI 407
Query: 280 EDGLQYFDIMKKIYRVSPQIEHHGCI 305
+DG + F MK+ Y + P +EH+ C+
Sbjct: 408 DDGRRVFSSMKEAYGLVPGVEHNVCM 433
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 95/188 (50%), Gaps = 2/188 (1%)
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
T L+ + G + A +F + D + +LL K + + + ++R M SG
Sbjct: 127 TKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAP 186
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
T SV+ CA++ L +G +H +V + ++ V L+ +Y++ ++ A++V
Sbjct: 187 QSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKV 246
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F M +RT+++WNS+I G+ NG E++ F+LM + F+ D + L++CS G +
Sbjct: 247 FDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGAL 306
Query: 280 EDGLQYFD 287
+ G D
Sbjct: 307 DFGCWLHD 314
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 17/192 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V WT+ IS + G +A FT MR YG P++ITFV +LS CA S +
Sbjct: 357 VTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAH--------SGLID 408
Query: 106 DMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
D F M A + ++ G + +++ F + +A ++ + + EP
Sbjct: 409 DGRRVFSSMKEA---YGLVPGVEHNVCMVDMFGRAGLLNDAYQFIK--KFIPKEPGPAVW 463
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS---RFGCIEFARQVFQR 222
S+L C R +G+ + +V + +N L ++Y+ R +E R + R
Sbjct: 464 TSMLGACRMHRNFDLGVKVAEHVLSVE-PENPGHYVMLSNIYALAGRMDRVEMVRNMMTR 522
Query: 223 MHKRTLVSWNSI 234
+ V +++I
Sbjct: 523 RRLKKQVGYSTI 534
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 130/215 (60%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P +++ +++D YA+ GRMD A +F+ M R W+ +++G V +EALEYF
Sbjct: 240 MPERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYF 299
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+ M G+ PD + + ++ CA + L G W+H Y+ K+ +V V L+D+Y +
Sbjct: 300 QSMLRCGLRPDRIAAVGAVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKC 359
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
GC++ A +F+ M +R++V+WN +IVG +GF +A+ F+ M+ D++S G L
Sbjct: 360 GCLDLAMLIFESMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGML 419
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
TAC+HAGL+ +GL+ F MKK + + P++EH+G +
Sbjct: 420 TACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGAL 454
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 117/277 (42%), Gaps = 52/277 (18%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDM 107
W ++I H + A L F RMR G P TF +L C P A L +
Sbjct: 82 WNTAIRLHAPAR-PRAALLYFARMRRCGVRPDAYTFPAVLKACGCAPG-----CRAGLLV 135
Query: 108 YAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
+A+ R LA +F V F+ +L+ R F+EA GV D ++ S
Sbjct: 136 HAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEA---------GGVSRDLVSWNS 186
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC--IEFARQVFQRMHK 225
++ +G+ M +P++D TL+D Y + G ++ AR++F +M +
Sbjct: 187 MVAGYVGCGEMGLAQEMFDEMPQKDTFSWA----TLIDGYGKQGGAGVDRARELFDQMPE 242
Query: 226 RTLVSWNSIIVGFA--------------------------VNGFVG-----EALEYFNLM 254
R LV WNS+I G+A ++G V EALEYF M
Sbjct: 243 RDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSM 302
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+ + D ++ GA++AC+ G +E G ++K
Sbjct: 303 LRCGLRPDRIAAVGAVSACAQLGALEQGRWLHSYLEK 339
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 158/281 (56%), Gaps = 20/281 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG---CADFPSNNVMV 100
T V WT+ +S + ++G +EA F+ MR P + V++L+ D +
Sbjct: 186 TIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIH 245
Query: 101 ST--------------ALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++ +L MYAK G++ A ++FD M+ + W A+++G+ K Y
Sbjct: 246 ASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAR 305
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA++ F M V PD ++I S ++ CA V +L M+ YV + D++D+V + + L+
Sbjct: 306 EAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALI 365
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D++++ G +E AR VF R R +V W+++IVG+ ++G EA+ + M++G ++V
Sbjct: 366 DMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDV 425
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L AC+H+G++ +G +F++M ++++PQ +H+ C+
Sbjct: 426 TFLGLLMACNHSGMVREGWWFFNLMAD-HKINPQQQHYACV 465
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 128/265 (48%), Gaps = 21/265 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------- 94
W + I + R+ +A L ++ M+L +P TF LL C+
Sbjct: 87 WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVF 146
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKRDYFEEA 146
+V V L+ +YAK R+ A VF+ + R WTA+++ + + EA
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEA 206
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F M+ V+PD++ ++SVLN ++ L G +H V K + + +L +
Sbjct: 207 LEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM 266
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G + A+ +F +M L+ WN++I G+A NG+ EA++ F+ M + D +S
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISI 326
Query: 267 TGALTACSHAGLIEDGLQYFDIMKK 291
T A++AC+ G +E ++ + +
Sbjct: 327 TSAISACAQVGSLEQARSMYEYVGR 351
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 107/203 (52%), Gaps = 7/203 (3%)
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVE 159
T L+ + FG + A VFD + W A++ G+ + ++F++AL + MQ++ V
Sbjct: 57 TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD T +L C+ + L +G ++H V + F +V V N L+ +Y++ + AR V
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176
Query: 220 FQ--RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
F+ + +RT+VSW +I+ +A NG EALE F+ M+K K D V+ L A +
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFT--- 233
Query: 278 LIEDGLQYFDIMKKIYRVSPQIE 300
++D Q I + ++ +IE
Sbjct: 234 CLQDLKQGRSIHASVVKMGLEIE 256
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 20/210 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ W + IS + ++G EA F M P I+ + +S CA S
Sbjct: 289 ILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEY 348
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEA 146
++V +S+AL+DM+AK G ++ A +VFD + R W+A++ G+ EA
Sbjct: 349 VGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREA 408
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ +R M+ GV P+ +T + +L C + + G W + + ++D+
Sbjct: 409 ISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDL 468
Query: 207 YSRFGCIEFARQVFQRMHKRTLVS-WNSII 235
R G ++ A +V + M + V+ W +++
Sbjct: 469 LGRAGHLDQAYEVIKCMPVQPGVTVWGALL 498
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 137/220 (62%), Gaps = 7/220 (3%)
Query: 88 SGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
S C D S N M+S Y K G ++ A +FD M D W+A+++G+ ++D F E
Sbjct: 350 SCCLDQISWNSMISG-----YVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTE 404
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
L F+ MQI G +PD ++SV++ C ++ L G W+H Y+ K K N+ + TL++
Sbjct: 405 TLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLIN 464
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y + GC+E A +VF+ + ++ + +WN++I+G A+NG V ++L+ F+ M++ +E++
Sbjct: 465 MYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEIT 524
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L AC H GL+++G ++F+ M + +++ P I+H+GC+
Sbjct: 525 FVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCM 564
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 118/253 (46%), Gaps = 28/253 (11%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVM 99
S++ V W S ++ + G + EA + RM P NV+
Sbjct: 187 SSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRM----------------------PERNVI 224
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG 157
S +++ ++ K G ++ A +F+ M+ D W+AL++ + + + +EEAL F+ M +G
Sbjct: 225 ASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANG 284
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
+ D + ++SVL+ C+ + + G +H V K + V + N L+ +YS + A+
Sbjct: 285 IMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQ 344
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
++F +SWNS+I G+ G + +A F+ M D VS++ ++ +
Sbjct: 345 KLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMP----DKDNVSWSAMISGYAQQD 400
Query: 278 LIEDGLQYFDIMK 290
+ L F M+
Sbjct: 401 RFTETLVLFQEMQ 413
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 99/214 (46%), Gaps = 27/214 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W++ IS + + E + F M++ GT P V+++S C +
Sbjct: 387 VSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAY 446
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N+++ T L++MY K G ++ A VF + +G W AL+ G +++
Sbjct: 447 IRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKS 506
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY----VPKQDFKDNVRVCNT 202
L+ F M+ GV P+ +T ++VL C R +G+ HR+ + + N++
Sbjct: 507 LKTFSEMKEHGVTPNEITFVAVLGAC---RHMGLVDEGHRHFNSMIQEHKIGPNIKHYGC 563
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVS-WNSII 235
++D+ R G ++ A ++ + M VS W +++
Sbjct: 564 MVDLLGRAGMLKEAEELIESMPMAPDVSTWGALL 597
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 41/181 (22%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
++V + L++MYA G + A VFD D W ++L G+V EEA + + M
Sbjct: 159 SDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRM 218
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
P++ NV N+++ ++ + G +
Sbjct: 219 -----------------------------------PER----NVIASNSMIVLFGKKGNV 239
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A ++F M ++ LVSW+++I + N EAL F M DEV L+AC
Sbjct: 240 EEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSAC 299
Query: 274 S 274
S
Sbjct: 300 S 300
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 4/164 (2%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
++ G+++R+ +A+ ++ M S V D T + C+ G + +V K
Sbjct: 97 MMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVG 156
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
F +V + NTL+++Y+ G + AR+VF +VSWNS++ G+ + G V EA + ++
Sbjct: 157 FDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYD 216
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
M + + ++ + G +E+ + F+ MK+ VS
Sbjct: 217 RMP----ERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVS 256
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 149/276 (53%), Gaps = 27/276 (9%)
Query: 50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------------- 95
SS S+H A + M YG +P+ F +L CA
Sbjct: 86 SSQSKH-------NAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKF 138
Query: 96 ---NNVMVSTALLDMYAK-FGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEY 149
+++ V ++ MY G M+ A +FD M D WTA++ G+ + A+
Sbjct: 139 GFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGL 198
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
FR MQI+GV PD +T++SVL+ C ++ L +G W+ Y+ K+ V + N L+D++++
Sbjct: 199 FRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAK 258
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G ++ A +F+ M KRT+VSW S+IVG A++G EA+ F M+ ++++F G
Sbjct: 259 CGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGL 318
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH+GL+E G QYF M + + + P+IEH+GC+
Sbjct: 319 LSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCM 354
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 140/251 (55%), Gaps = 23/251 (9%)
Query: 78 PSHITFVTLLSGCADFPSNN-----------------VMVSTALLDMY----AKFGRMDL 116
P+ T+ +L CA + N V V L+ MY G ++
Sbjct: 8 PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67
Query: 117 ATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A VFD M D W+A++ G+V+ +A+ FR MQI GV PD +T++SVL+ C
Sbjct: 68 ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTG 127
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ L +G W+ YV K+ + NV + N L+D++++ G ++ A +F+ M +R +VSW S+
Sbjct: 128 LGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSV 187
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I G A++G EA+ F M + D+V F G L+ACSH+GL++ G +YFD M+K +
Sbjct: 188 IGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFS 247
Query: 295 VSPQIEHHGCI 305
+ P+IEH+GC+
Sbjct: 248 IVPKIEHYGCM 258
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 151/310 (48%), Gaps = 50/310 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V W S I+ + R EA + +M P +T + ++S CA S
Sbjct: 221 VSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRY 280
Query: 97 ------NVMVS--TALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE-- 144
N+ +S AL+DMY K G ++ V+FD MR WT ++ G+ K +
Sbjct: 281 IEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMA 340
Query: 145 -----------------------------EALEYFRVMQISGVEPDYLTIISVLNVCANV 175
EALE FR MQ S ++PD +T++ L+ C+ +
Sbjct: 341 GKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQL 400
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
L G+W H Y+ K + +V + L+D+Y++ G + A QVF M +R ++W +II
Sbjct: 401 GALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAII 460
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV 295
G A+ G V +A+ YF+ M DE++F G LTAC H GL+E+G +YFD MK + +
Sbjct: 461 GGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNL 520
Query: 296 SPQIEHHGCI 305
SPQ +H+ C+
Sbjct: 521 SPQPKHYSCM 530
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 110/222 (49%), Gaps = 33/222 (14%)
Query: 103 ALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
++ M G LA VFD +R W +L+NG+V+R EA+ ++ M V+P
Sbjct: 194 GIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKP 253
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D +T+I V++ CA + +L +G +HRY+ + + + N LMD+Y + G +E + +F
Sbjct: 254 DEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLF 313
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVG-------------------------------EALE 249
M K+T+VSW ++IVG+A NG + EALE
Sbjct: 314 DNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALE 373
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
F MQ K D+V+ L+ACS G ++ G+ + +KK
Sbjct: 374 LFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKK 415
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 97/227 (42%), Gaps = 29/227 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + I ++ EA F M+ P +T + LS C+
Sbjct: 353 VAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNY 412
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
S +V + TAL+DMYAK G M A VF+ M R WTA++ G +A
Sbjct: 413 IKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDA 472
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV----RVCNT 202
+ YF M SG+ PD +T + VL C + + G +Y + + N+ + +
Sbjct: 473 IFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEG---RKYFDQMKSRFNLSPQPKHYSC 529
Query: 203 LMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSII--VGFAVNGFVGE 246
++++ R G +E A ++ + M + + W ++ G N +GE
Sbjct: 530 MVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGE 576
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 8/166 (4%)
Query: 130 WTALLNGFVKRDYFEEALE-YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
W A++ G V+ + ++ L Y R++ +G PD T + VCAN+ +G + V
Sbjct: 121 WNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQV 180
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K F ++ + N ++ + G A +VF R LVSWNS+I G+ EA+
Sbjct: 181 LKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAM 240
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
+ M K DEV+ G ++AC+ L+ + ++I+R
Sbjct: 241 GIYQQMITEHVKPDEVTMIGVVSACAQ-------LESLKLGREIHR 279
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 151/291 (51%), Gaps = 31/291 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
V W++ I+ + + G EA F +MRL G+ P+ +T V+LLSGCA
Sbjct: 333 VTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCH 392
Query: 92 ----------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGF 137
+ P +++MV AL+DMY+K A +FD++ R WT L+ G
Sbjct: 393 AIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGN 452
Query: 138 VKRDYFEEALEYFRVMQISG--VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195
+ EALE F M V P+ TI L CA + L G +H YV + F+
Sbjct: 453 AQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFES 512
Query: 196 NVR-VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+ V N L+D+YS+ G ++ AR VF MH+R VSW S++ G+ ++G EAL+ F M
Sbjct: 513 AMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEM 572
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
QK D V+F L ACSH+G+++ G+ YF+ M K + V P EH+ C+
Sbjct: 573 QKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACM 623
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 129/270 (47%), Gaps = 23/270 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T W I R G + + + RM+ G P H TF +L C + PS
Sbjct: 90 TVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVH 149
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF-----WTALLNGFVKRD 141
NV V L+ MY + G + A VFD MR W +++ +++
Sbjct: 150 AVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 209
Query: 142 YFEEALEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
A++ F R+ + G+ PD +++++VL CA+V G +H Y + ++V V
Sbjct: 210 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG 269
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N ++D+Y++ G +E A +VF+RM + +VSWN+++ G++ G +AL F +++ +
Sbjct: 270 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 329
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
+ V+++ + + GL + L F M+
Sbjct: 330 LNVVTWSAVIAGYAQRGLGFEALDVFRQMR 359
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V WTS ++ + G EA F M+ G P +TFV +L C S++ MV +
Sbjct: 547 VSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYAC----SHSGMVDQGI- 601
Query: 106 DMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
F M+ F V+ G + + +++ + +EA+E R M + ++ +
Sbjct: 602 ---NYFNGMNKD---FGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVAL 655
Query: 166 ISVLNVCANVR 176
+S V ANV
Sbjct: 656 LSACRVYANVE 666
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 131/214 (61%), Gaps = 2/214 (0%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P N++V ++ + ++L +F M D W +++ GF + ++EAL +F
Sbjct: 254 PMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFH 313
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M+ SGV P+ LT++S L+ CA+ L G W+H YV K D + + ++L+D+YS+ G
Sbjct: 314 EMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCG 373
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
I+ A Q+F+ +R L +W SI+ G A++G +AL YF+ M++ + D+V+ G L+
Sbjct: 374 DIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLS 433
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
AC+HAGL++ G YF M+K++ + P++EH+GC+
Sbjct: 434 ACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCM 467
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 39/236 (16%)
Query: 80 HITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR--GCDFWTALLNGF 137
H + V C++F VS ALL Y G + VFD MR G WT ++ +
Sbjct: 114 HASVVRTGFACSEF------VSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAY 167
Query: 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197
V + E+ALE FR M+ G+ PD + I +V++ C + LG+ MH ++ K + +
Sbjct: 168 VCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDA 227
Query: 198 RVCNTLMDVYSRFGCIEFA-------------------------------RQVFQRMHKR 226
V +TL+ Y G +++A +Q+FQ M R
Sbjct: 228 FVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDR 287
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+VSWNS+I GFA G EAL +F+ M+ + ++ L+AC+ G ++ G
Sbjct: 288 DVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTG 343
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 6/147 (4%)
Query: 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK 194
NG + RD L Y+ +G+ P+ T + +L + + + G +H V + F
Sbjct: 67 NGLITRD---PPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFA 123
Query: 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+ V L+ Y G + RQVF M + LV W II + F +ALE F M
Sbjct: 124 CSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTM 183
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIED 281
++ D V+ + ++AC GL+ D
Sbjct: 184 REVGLTPDMVAISTVVSAC---GLLGD 207
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 145/264 (54%), Gaps = 14/264 (5%)
Query: 49 TSSISRHC-RSGCILEAALEFTRMRLYGTN----PSHITFVTLLSGCADFPSNNVMVSTA 103
T I H + G LE + +R+Y + +H+ F L P+ +++
Sbjct: 129 TQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQL-------PTRDIVSWNI 181
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
++D Y KFG +D+A +F M + WT ++ GFV+ +EAL + M ++G++PD
Sbjct: 182 MIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPD 241
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
+T+ L+ CA + L G W+H Y+ K + K + + L D+Y + G +E A VF
Sbjct: 242 SITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFS 301
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
++ K+ + +W +II G A++G EAL++F MQK + ++FT LTACSHAGL E+
Sbjct: 302 KLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEE 361
Query: 282 GLQYFDIMKKIYRVSPQIEHHGCI 305
G F+ M +Y + P +EH+GC+
Sbjct: 362 GKSLFESMSSVYNIKPSMEHYGCM 385
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 93/222 (41%), Gaps = 36/222 (16%)
Query: 96 NNVMVSTALLDMYAKFGRMDLA--TVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFR 151
N + VST LL YA+ ++LA VVFD + + W +L + + E AL +
Sbjct: 41 NQLTVST-LLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYH 99
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M + V + T +L C+ + +H ++ K+ F V N+L+ VY+ G
Sbjct: 100 QMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISG 159
Query: 212 CIEFARQVFQRMHKRTLVSWNS-------------------------------IIVGFAV 240
I+ A +F ++ R +VSWN +IVGF
Sbjct: 160 NIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVR 219
Query: 241 NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
G EAL M K D ++ + +L+AC+ G +E G
Sbjct: 220 IGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQG 261
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 162/319 (50%), Gaps = 51/319 (15%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------ 91
SK V W S IS + G EA F RM++ P+ +T V +LS CA
Sbjct: 190 SKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLE 249
Query: 92 ------DFPSN-----NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFV 138
D+ N+++S A+LDMY K G ++ A +FD M D WT +++G+
Sbjct: 250 FGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYA 309
Query: 139 K-------RDYFE------------------------EALEYFRVMQIS-GVEPDYLTII 166
K R F+ EAL FR +Q++ +P+ +T+
Sbjct: 310 KVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLA 369
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S L CA + + +G W+H Y+ KQ K N + +L+D+YS+ G +E A +VF + +R
Sbjct: 370 STLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERR 429
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
+ W+++I G A++G A++ F+ MQ+ K + V+FT L ACSH+GL+++G +F
Sbjct: 430 DVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFF 489
Query: 287 DIMKKIYRVSPQIEHHGCI 305
+ M+ +Y V P +H+ C+
Sbjct: 490 NQMRPVYGVVPGSKHYACM 508
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 105/193 (54%), Gaps = 6/193 (3%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+++ +S +L+ Y+ G +D A +VF + D W ++++GFV+ EEAL+ F+ M
Sbjct: 164 SDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRM 223
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
++ P+ +T++ VL+ CA L G W Y+ + N+ + N ++D+Y + G +
Sbjct: 224 KMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSL 283
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E AR++F +M ++ +VSW ++I G+A G A F++M + D ++ +++
Sbjct: 284 EDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMP----REDITAWNALISSY 339
Query: 274 SHAGLIEDGLQYF 286
G ++ L F
Sbjct: 340 QQNGKPKEALAIF 352
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
Query: 114 MDLATVVFDVMRGCDF--WTALLNGFVKRDY-FEEALEYFRVMQISGVEPDYLTIISVLN 170
+D A VFD + + W L+ F + L + +++ S P+ T V+
Sbjct: 80 LDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIK 139
Query: 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS 230
V +L G +H V K F ++ + N+L+ YS G ++ A VF ++ ++ +VS
Sbjct: 140 AATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVS 199
Query: 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
WNS+I GF G EAL+ F M+ + + V+ G L+AC+
Sbjct: 200 WNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACA 243
>gi|302797815|ref|XP_002980668.1| hypothetical protein SELMODRAFT_113147 [Selaginella moellendorffii]
gi|300151674|gb|EFJ18319.1| hypothetical protein SELMODRAFT_113147 [Selaginella moellendorffii]
Length = 402
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 149/278 (53%), Gaps = 18/278 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF------------ 93
+ WT +I+ H + G EA F M+L G P+ ITF+ L+ C+
Sbjct: 52 ILWTETIAEHTKRGMAKEALRIFQTMQLNGVAPNKITFLAALNACSRLEDLGDIHDKIVQ 111
Query: 94 --PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
+N MV+T ++ Y+KF A VFD +R D + ++ + K EE+L
Sbjct: 112 GGAESNPMVATTIIHRYSKFSSSGKARQVFDKVRDPDVFVYNVMVAAYAKDGLHEESLGL 171
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN-VRVCNTLMDVYS 208
F+ MQ+ G+ PD +T +++L+ C + R L G +HR + + + + L+ +YS
Sbjct: 172 FQRMQMEGITPDKITFLAMLDSCQDERALKTGFLVHRMIEETGLGSAMIDISTGLISMYS 231
Query: 209 RFGCIEFARQVFQR-MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
+ G +E A+ VFQ+ M +R++++W+SII +A + V +ALE F MQ+ F V+F
Sbjct: 232 KCGDLEAAKAVFQKAMEERSVITWSSIIAAYAHHNRVSQALELFEEMQQSGFAPSPVTFL 291
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH GL+ + YF M + Y ++P +H+GC+
Sbjct: 292 SVLSACSHRGLLYRAITYFASMIQDYGLTPLGQHYGCV 329
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
++ +Y + G + A + Q M + ++ W I G EAL F MQ
Sbjct: 24 KNIVKMYLKCGSVMDASKTLQEMVEPDVILWTETIAEHTKRGMAKEALRIFQTMQLNGVA 83
Query: 261 TDEVSFTGALTACS 274
++++F AL ACS
Sbjct: 84 PNKITFLAALNACS 97
>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 1441
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 151/269 (56%), Gaps = 22/269 (8%)
Query: 59 GCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------------FPSNNVMV 100
G + EA F +++ G P+ +TF LL GC F S++ MV
Sbjct: 590 GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMV 649
Query: 101 STALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
+LL +Y R + +F + +G WTAL++G+ ++++ E+AL++++ M+
Sbjct: 650 CVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDN 709
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
+ PD SVL CA + +L G +H + F + C++L+D+Y++ G ++ +
Sbjct: 710 ILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSL 769
Query: 218 QVFQRMHKRT-LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
QVF+ M +R ++SWNS+IVG A NG+ EALE F M++ DEV+F G L+ACSHA
Sbjct: 770 QVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHA 829
Query: 277 GLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G + +G + FD+M Y++ P+++H GC+
Sbjct: 830 GRVSEGRKVFDLMVNNYKLLPRVDHLGCM 858
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 19/268 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
V W IS H + G EA F ++ G + + ++LS A
Sbjct: 273 NVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVH 332
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+NV V +AL++MYAK +MD A VF+ + R W A+L GF + +
Sbjct: 333 AQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQ 392
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E +E+F M+ G +PD T S+ + CA++ L G +H + K F N+ V N L+
Sbjct: 393 EVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALV 452
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G ++ AR+ F+ M VSWN+IIVG+ + EA F M DEV
Sbjct: 453 DMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEV 512
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKI 292
S ++AC++ ++ G Q ++ K+
Sbjct: 513 SLASIVSACANVQELKRGQQCHCLLVKV 540
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 135/265 (50%), Gaps = 21/265 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + + ++G E F+ M+ +G P TF ++ S CA
Sbjct: 376 VLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTV 435
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
++N+ V+ AL+DMYAK G + A F++M+ D W A++ G+V+ +Y +EA
Sbjct: 436 MIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEA 495
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
FR M +GV PD +++ S+++ CANV+ L G H + K + ++L+D+
Sbjct: 496 FFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDM 555
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G + AR VF M R +VS N++I G+ + G + EA+ F +Q K EV+F
Sbjct: 556 YVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTF 614
Query: 267 TGALTACSHAGLIEDGLQ-YFDIMK 290
G L C A ++ G Q + +MK
Sbjct: 615 AGLLDGCDGAFMLNLGRQIHGQVMK 639
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 129/249 (51%), Gaps = 20/249 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
TV WT+ I+ + R G +EA F RM+ G P IT VT +
Sbjct: 208 TVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVT------------------V 249
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
++ Y GR+ A +F + + W +++G KR + EEA+ +F ++ +G++
Sbjct: 250 VNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATR 309
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
++ SVL+ A++ L G +H K+ DNV V + L+++Y++ ++ A+QVF
Sbjct: 310 SSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNS 369
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ +R +V WN+++ GFA NG E +E+F+ M++ + DE +FT +AC+ + G
Sbjct: 370 LGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFG 429
Query: 283 LQYFDIMKK 291
Q +M K
Sbjct: 430 GQLHTVMIK 438
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 99/254 (38%), Gaps = 54/254 (21%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV--------- 98
W S +S + G F M + P+ TF +LS C+ N
Sbjct: 110 WNSVLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVF 169
Query: 99 --------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
L+DMYAK + A +VFD D WTAL+ G+V+ + EA++
Sbjct: 170 KTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVK 229
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F MQ G PD +T+++V+N Y
Sbjct: 230 VFDRMQRVGHAPDQITLVTVVN-----------------------------------AYV 254
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
G + AR++F ++ +V+WN +I G A GF EA+ +F ++K K S
Sbjct: 255 ALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGS 314
Query: 269 ALTACSHAGLIEDG 282
L+A + ++ G
Sbjct: 315 VLSAIASLSMLNYG 328
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 2/190 (1%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQIS 156
++ ++D+Y K G +D A F + D W ++L+ ++ F ++ F M
Sbjct: 77 LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNH 136
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
V P+ T VL+ C+ ++ + G +H V K F L+D+Y++ + A
Sbjct: 137 EVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDA 196
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
R VF VSW ++I G+ +GF EA++ F+ MQ+ D+++ + A
Sbjct: 197 RLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVAL 256
Query: 277 GLIEDGLQYF 286
G + D + F
Sbjct: 257 GRLADARKLF 266
>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Vitis vinifera]
Length = 607
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 133/216 (61%), Gaps = 7/216 (3%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++V ++ +L+ YA R+D A VFD M R W +++ FV+ F+ AL F M
Sbjct: 161 SDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEM 220
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ---DFKDNVRVCNTLMDVYSRF 210
Q EPD TI S+ N CA + +L +G+W H ++ K+ D ++V + +L+D+Y +
Sbjct: 221 Q-KFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNTSLVDMYCKC 279
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGA 269
G +E A Q+F RM KR + SWNS+I+GF+ +G V ALEYF M + + ++F G
Sbjct: 280 GSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGV 339
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+AC+H GL+ +G +YFD+M Y++ P++EH+GC+
Sbjct: 340 LSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCL 375
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 130 WTALLNGFVKR-DYFEEALE-YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
W AL+ + D + A+ Y R+++ V D T VL CA + L G +H
Sbjct: 94 WNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQ 153
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
+ K F +V + N+L+ Y+ ++FA+ VF RM +R+LVSWN +I F G A
Sbjct: 154 ILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAA 213
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
L F MQK F+ D + AC+ G + G+
Sbjct: 214 LNLFGEMQK-FFEPDGYTIQSIANACAGMGSLSLGM 248
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 148/266 (55%), Gaps = 19/266 (7%)
Query: 59 GCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVS 101
G ++ L + RM G S+ TF +++ CAD + +++ V
Sbjct: 104 GFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQ 163
Query: 102 TALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
AL+ +YAK M +A VFD M R W +L++G+ + +E++ F +M SG +
Sbjct: 164 AALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQ 223
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD TI+S+L+ C+ + L G W+H Y F NV + +L+++Y+R G + AR+V
Sbjct: 224 PDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREV 283
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F M +R +V+W ++I G+ ++G+ +A+E F M+ + + ++F L+AC+H+GLI
Sbjct: 284 FDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLI 343
Query: 280 EDGLQYFDIMKKIYRVSPQIEHHGCI 305
+DG + F MK+ Y + P +EH+ C+
Sbjct: 344 DDGRRVFSSMKEAYGLVPGVEHNVCM 369
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 95/188 (50%), Gaps = 2/188 (1%)
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
T L+ + G + A +F + D + +LL K + + + ++R M SG
Sbjct: 63 TKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAP 122
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
T SV+ CA++ L +G +H +V + ++ V L+ +Y++ ++ A++V
Sbjct: 123 QSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKV 182
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F M +RT+++WNS+I G+ NG E++ F+LM + F+ D + L++CS G +
Sbjct: 183 FDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGAL 242
Query: 280 EDGLQYFD 287
+ G D
Sbjct: 243 DFGCWLHD 250
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 17/192 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V WT+ IS + G +A FT MR YG P++ITFV +LS CA S +
Sbjct: 293 VTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAH--------SGLID 344
Query: 106 DMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
D F M A + ++ G + +++ F + +A ++ + + EP
Sbjct: 345 DGRRVFSSMKEA---YGLVPGVEHNVCMVDMFGRAGLLNDAYQFIK--KFIPKEPGPAVW 399
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS---RFGCIEFARQVFQR 222
S+L C R +G+ + +V + +N L ++Y+ R +E R + R
Sbjct: 400 TSMLGACRMHRNFDLGVKVAEHVLSVE-PENPGHYVMLSNIYALAGRMDRVEMVRNMMTR 458
Query: 223 MHKRTLVSWNSI 234
+ V +++I
Sbjct: 459 RRLKKQVGYSTI 470
>gi|413925046|gb|AFW64978.1| hypothetical protein ZEAMMB73_457124 [Zea mays]
Length = 592
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 153/281 (54%), Gaps = 20/281 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------- 91
TV W + IS + R G +A F +M +T + L A
Sbjct: 25 TVSWNTIISGYLRCGMPNKALQAFGQMVKEPVRLDDVTLLNALVASAKAGKAKVGRLCHS 84
Query: 92 ----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+ N + ++L+ MYAK G ++ A VF M R WT++++G+ + F++
Sbjct: 85 LVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKK 144
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A++ FR MQI+G++ D TI +V++ CA + L +G ++H Y + V N+L+D
Sbjct: 145 AVDLFRDMQITGMKADDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLID 204
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEV 264
+YS+ G I A ++F + KR + SW ++I+GF VNG EAL+ F M+ +G +EV
Sbjct: 205 MYSKCGDITKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCNEALDLFAQMEGEGKVMPNEV 264
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G LT+CSH GL+E G +F M +Y ++P+IEH+GC+
Sbjct: 265 TFLGVLTSCSHGGLVEQGFHHFQRMSMVYNLAPRIEHYGCM 305
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 129/215 (60%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P+ +++ +++D YAK G M++A +FB M + W+ +++G+ +EAL F
Sbjct: 234 MPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLF 293
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R M G++PD ++++ ++ C+ + L G W+H Y+ + ++ V L+D+Y +
Sbjct: 294 RQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKC 353
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + AR +F M +R +VSWN +IVG +NGF EALE F M+ D++ F G L
Sbjct: 354 GSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVL 413
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSHA L+ +GL F+ MK +YR+ P++EH+GC+
Sbjct: 414 MACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCL 448
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 19/195 (9%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+V V L+ MY + G A VFD D W ++L G+V E A F
Sbjct: 142 GGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDE 201
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV-----CNTLMDVY 207
M V V ++ G G M + F D++ N+++D Y
Sbjct: 202 MPERDV------------VSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGY 249
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
++ G +E AR++F +M ++ ++SW+ +I G+A + EAL F M K D VS
Sbjct: 250 AKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVV 309
Query: 268 GALTACSHAGLIEDG 282
GA++ACS G ++ G
Sbjct: 310 GAVSACSQLGALDQG 324
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%)
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
E AL ++ M+ G+ D T VL C + L G + K+ F +V V N L
Sbjct: 92 ERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGL 151
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+ +Y R G +AR VF ++ LVSWNS++ G+ G + A F+ M
Sbjct: 152 ISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEM 202
>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
Length = 773
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 130/209 (62%), Gaps = 2/209 (0%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQIS 156
+V+ ALL +Y++ G + A +FD M R W +L+ G VK++ EA+E FR+MQ
Sbjct: 213 VVNNALLRLYSEDGCFEEALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGK 272
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
G+ ++T+ ++L VCA V LG G +H + K K + V N+L+D+Y++ G +++
Sbjct: 273 GMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYC 332
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
R+VF M + L SWN++I G+A+NG + EA+E F M F D ++F L+ CSHA
Sbjct: 333 RRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHA 392
Query: 277 GLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
GL +DG + F++MK + +SP +EH+ C+
Sbjct: 393 GLADDGCRLFEMMKMDHGISPTVEHYACL 421
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 5/201 (2%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVF-----DVMRGCDFWTALLNGFVKRDYFEEALEYF 150
NN + L+ +++ GR+D A VF DV W A+ G+ + Y +EAL +
Sbjct: 106 NNPTLKGKLITLFSVCGRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLLY 165
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M + L C+++ L G +H V K + V N L+ +YS
Sbjct: 166 YEMVCQFGQLGNFAFSMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLYSED 225
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
GC E A ++F M R LVSWNS+I G V EA+E F +MQ V+ T L
Sbjct: 226 GCFEEALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTIL 285
Query: 271 TACSHAGLIEDGLQYFDIMKK 291
C+ + G + ++ K
Sbjct: 286 PVCARVTALGSGKEIHAVIVK 306
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 21/220 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I+ + + EA F M+ G S +T T+L CA +
Sbjct: 244 VSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAV 303
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ V +L+DMYAK G MD VF+ M+G D W L+ G+ EA
Sbjct: 304 IVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEA 363
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP-KQDFKDNVRVCNTLMD 205
+E F+ M SG PD +T I++L+ C++ G + + V L+D
Sbjct: 364 MESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDHGISPTVEHYACLVD 423
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV 244
V R G I+ A ++ + M K T W S++ ++G V
Sbjct: 424 VLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNV 463
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 153/317 (48%), Gaps = 57/317 (17%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I+ + ++G +EA F M P +T +++S CA +
Sbjct: 219 VSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHAR 278
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM----------------------- 124
N++++S A +DMYAK R+ A +FD M
Sbjct: 279 VVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKA 338
Query: 125 ----------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
R W AL+ G+ + EEAL F +++ V P + T ++L CA+
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACAD 398
Query: 175 VRTLGIGLWMHRYVPKQDFK------DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
+ L +G+ H +V K FK D++ V N+L+D+Y + GC+E VF++M +R
Sbjct: 399 LADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDC 458
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
VSWN++I+GFA NG+ EALE F M K D ++ G L+AC HAG +E+G YF
Sbjct: 459 VSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSS 518
Query: 289 MKKIYRVSPQIEHHGCI 305
M + + V+P +H+ C+
Sbjct: 519 MTRDFGVAPLRDHYTCM 535
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 101/194 (52%), Gaps = 2/194 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYF 150
P NV +++ K G +D A +F M D W ++++GF + D EEAL YF
Sbjct: 81 MPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYF 140
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+M G + T S L+ C+ + + G+ +H + K +V + + L+D+YS+
Sbjct: 141 AMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKC 200
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + A+QVF M R +VSWNS+I + NG EAL+ F +M + + DEV+ +
Sbjct: 201 GNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVI 260
Query: 271 TACSHAGLIEDGLQ 284
+AC+ I+ G +
Sbjct: 261 SACASLSAIKVGQE 274
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 129/288 (44%), Gaps = 51/288 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN---------- 97
W S +S + EA F M G + TF + LS C+ N
Sbjct: 120 WNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIA 179
Query: 98 -------VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
V + +AL+DMY+K G ++ A VFD M R W +L+ + + EAL+
Sbjct: 180 KSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALK 239
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDNVRVCNTLMDVY 207
F+VM S VEPD +T+ SV++ CA++ + +G +H V K D ++++ + N +D+Y
Sbjct: 240 VFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMY 299
Query: 208 SRFGCIEFARQVFQ-------------------------------RMHKRTLVSWNSIIV 236
++ I+ AR +F +M +R +VSWN++I
Sbjct: 300 AKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIA 359
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
G+ NG EAL F L+++ +F L AC+ + G+Q
Sbjct: 360 GYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQ 407
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 33/226 (14%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + I+ + ++G EA F ++ P+H TF +L CAD
Sbjct: 352 VSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVH 411
Query: 95 ------------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKR 140
+++ V +L+DMY K G ++ +VF M R C W A++ GF +
Sbjct: 412 VLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQN 471
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW----MHRYVPKQDFKDN 196
Y EALE FR M SG +PD++T+I VL+ C + + G M R +D+
Sbjct: 472 GYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDH 531
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVN 241
++D+ R G +E A+ + + M + V W S++ V+
Sbjct: 532 Y---TCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVH 574
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 32/156 (20%)
Query: 168 VLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
+L+ C ++ I + +H V K F + V + N L+D Y++ G +E RQ+F +M +R
Sbjct: 25 LLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQR 84
Query: 227 TLVSWNSIIVGFAVNGFVG-------------------------------EALEYFNLMQ 255
+ +WNS++ G GF+ EAL YF +M
Sbjct: 85 NVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMH 144
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
K F +E +F L+ACS + G+Q ++ K
Sbjct: 145 KEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAK 180
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 156/318 (49%), Gaps = 58/318 (18%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WTS +S H R G +E F RMR+ G + +LS D +
Sbjct: 237 VTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGY 296
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRG------------------CD-- 128
N + V +L+ +Y K G ++ A ++F ++ CD
Sbjct: 297 VVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEA 356
Query: 129 ---------------------FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
W+A++ GF + EEALE FR MQ++ V+ + +TI S
Sbjct: 357 FAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIAS 416
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
VL+VCA + L +G +H +V + N+ V N L+++Y++ G + VF+++ +
Sbjct: 417 VLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKD 476
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
L+SWN+++ G+ ++G A+ F+ M K F+ D V+F L+ACSHAGL+ +G + FD
Sbjct: 477 LISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFD 536
Query: 288 IMKKIYRVSPQIEHHGCI 305
M K +RV PQ+EH+ C+
Sbjct: 537 KMIKEFRVEPQMEHYACM 554
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 129/305 (42%), Gaps = 66/305 (21%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----------- 96
W S + + G EA + RMR G + TF ++ CA S
Sbjct: 103 WNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVV 162
Query: 97 ------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
N+ V L+ MY K GRMD A VF+ M R C W +++G+ A E
Sbjct: 163 EMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASE 222
Query: 149 YFRVMQISGVEPDYLTIISVLNVCA-------------NVRTLGIGLW------------ 183
FR+M +G+EP+ +T S+L+ A +R GIG
Sbjct: 223 MFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSV 282
Query: 184 ----------MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
+H YV K F++ + V N+L+ +Y + G + AR +F + + +VSWN+
Sbjct: 283 DLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNA 342
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDE--------VSFTGALTACSHAGLIEDGLQY 285
+I +A G+ EA F ++ KTDE VS++ + + G E+ L+
Sbjct: 343 LISSYADLGWCDEAFAIFLQLE----KTDEYPMVRPNVVSWSAVIGGFASKGQGEEALEL 398
Query: 286 FDIMK 290
F M+
Sbjct: 399 FRRMQ 403
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 5/196 (2%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDV-----MRGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ ++ +YA FG + A VF+V W ++L V Y EEALE + M+
Sbjct: 68 LAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMR 127
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
GV D T V+ CA + + + +H +V + F+ N+ V N LM +Y + G ++
Sbjct: 128 KLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMD 187
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
AR+VF+RM R+ VSWN+++ G+A+N A E F +M + + V++T L++ +
Sbjct: 188 DARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHA 247
Query: 275 HAGLIEDGLQYFDIMK 290
G + ++ F M+
Sbjct: 248 RCGQHVETMELFGRMR 263
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 154/281 (54%), Gaps = 20/281 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVST- 102
T V WTS IS + ++G +EA F+ MR P I V++L D S
Sbjct: 238 TIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIH 297
Query: 103 ----------------ALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFE 144
+L +YAK G + +A + F+ + FW A+++G+VK Y E
Sbjct: 298 GCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAE 357
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA+E FR+M+ + PD +T+ S + CA + +L + WM Y+ +F+++V V +L+
Sbjct: 358 EAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLI 417
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D Y++ G ++ AR VF R+ + +V W++++VG+ ++G E++ F+ M++ ++V
Sbjct: 418 DTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDV 477
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G LTAC ++GL+E+G F M+ Y + P+ +H+ C+
Sbjct: 478 TFVGLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYACV 517
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 19/252 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W + + + R G A + RM++ +P +F +L C+ P+
Sbjct: 141 WNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIF 200
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALE 148
++V V L+ +YAK G + A VF V R WT++++G+ + EAL
Sbjct: 201 RHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALR 260
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M+ + V PD++ ++SVL +V L G +H V K + + +L +Y+
Sbjct: 261 IFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYA 320
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G + AR F ++ +L+ WN++I G+ NG+ EA+E F LM+ + D ++ T
Sbjct: 321 KCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTS 380
Query: 269 ALTACSHAGLIE 280
++ AC+ G +E
Sbjct: 381 SIAACAQIGSLE 392
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 2/181 (1%)
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L++ + G + A +FD D W A++ + + +F A+E + MQ++ V PD
Sbjct: 113 LVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPD 172
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
+ VL C+ + L +G +H + + F+ +V V N L+ +Y++ G I A VF
Sbjct: 173 GFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFG 232
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
R+ RT+VSW SII G+A NG EAL F+ M+K + D ++ L A + +E
Sbjct: 233 RLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEH 292
Query: 282 G 282
G
Sbjct: 293 G 293
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 156/318 (49%), Gaps = 58/318 (18%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WTS +S H R G +E F RMR+ G + +LS D +
Sbjct: 237 VTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGY 296
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRG------------------CD-- 128
N + V +L+ +Y K G ++ A ++F ++ CD
Sbjct: 297 VVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEA 356
Query: 129 ---------------------FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
W+A++ GF + EEALE FR MQ++ V+ + +TI S
Sbjct: 357 FAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIAS 416
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
VL+VCA + L +G +H +V + N+ V N L+++Y++ G + VF+++ +
Sbjct: 417 VLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKD 476
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
L+SWN+++ G+ ++G A+ F+ M K F+ D V+F L+ACSHAGL+ +G + FD
Sbjct: 477 LISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFD 536
Query: 288 IMKKIYRVSPQIEHHGCI 305
M K +RV PQ+EH+ C+
Sbjct: 537 KMIKEFRVEPQMEHYACM 554
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 129/305 (42%), Gaps = 66/305 (21%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----------- 96
W S + + G EA + RMR G + TF ++ CA S
Sbjct: 103 WNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVV 162
Query: 97 ------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
N+ V L+ MY K GRMD A VF+ M R C W +++G+ A E
Sbjct: 163 EMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASE 222
Query: 149 YFRVMQISGVEPDYLTIISVLNVCA-------------NVRTLGIGLW------------ 183
FR+M +G+EP+ +T S+L+ A +R GIG
Sbjct: 223 MFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSV 282
Query: 184 ----------MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
+H YV K F++ + V N+L+ +Y + G + AR +F + + +VSWN+
Sbjct: 283 DLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNA 342
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDE--------VSFTGALTACSHAGLIEDGLQY 285
+I +A G+ EA F ++ KTDE VS++ + + G E+ L+
Sbjct: 343 LISSYADLGWCDEAFAIFLQLE----KTDEYPMVRPNVVSWSAVIGGFASKGQGEEALEL 398
Query: 286 FDIMK 290
F M+
Sbjct: 399 FRRMQ 403
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 5/196 (2%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDV-----MRGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ ++ +YA FG + A VF+V W ++L V Y EEALE + M+
Sbjct: 68 LAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMR 127
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
GV D T V+ CA + + + +H +V + F+ N+ V N LM +Y + G ++
Sbjct: 128 KLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMD 187
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
AR+VF+RM R+ VSWN+++ G+A+N A E F +M + + V++T L++ +
Sbjct: 188 DARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHA 247
Query: 275 HAGLIEDGLQYFDIMK 290
G + ++ F M+
Sbjct: 248 RCGQHVETMELFGRMR 263
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 147/277 (53%), Gaps = 19/277 (6%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------- 94
W I G L + +++M G P F L CA
Sbjct: 786 WNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLV 845
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
SN++ V AL+DMYAK G ++ A +VFD M D WT++++G+ Y E L
Sbjct: 846 CCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLG 905
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
+F +M+ SGV P+ ++I+SVL C N+ L G W H YV + F+ ++ V +MD+YS
Sbjct: 906 FFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYS 965
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G ++ AR +F + LV W+++I + ++G +A++ F+ M K + V+FT
Sbjct: 966 KCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTC 1025
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH+GL+E+G YF +M + + ++ ++ ++ C+
Sbjct: 1026 VLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACM 1062
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 145/288 (50%), Gaps = 24/288 (8%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN 97
SK + W++ I+ + + EA F M P+ +T V+ L CA S N
Sbjct: 265 SKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACA--VSRN 322
Query: 98 V-------------------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNG 136
+ VSTAL+DMY K D A +F + D W ALL+G
Sbjct: 323 LEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSG 382
Query: 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
+ + +++ FR M G++PD + ++ +L + + L +H YV + F N
Sbjct: 383 YAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSN 442
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
V V +L+++YS+ G + A ++F+ M R +V W+S+I + ++G GEALE F+ M K
Sbjct: 443 VFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVK 502
Query: 257 -GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303
+ + V+F L+ACSHAGL+E+GL+ FD M Y++ P EH G
Sbjct: 503 NSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFG 550
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 94/178 (52%), Gaps = 2/178 (1%)
Query: 107 MYAKFGRMDLATVVF-DVMRGCDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
MY F R+D A++VF D+ C F W ++ GF F +LE + M G++PD
Sbjct: 761 MYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFA 820
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
L CA + L G +H+++ +++ V L+D+Y++ G IE AR VF +M
Sbjct: 821 FPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMA 880
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
R LVSW S+I G+A NG+ E L +F+LM+ + VS L AC + G + G
Sbjct: 881 VRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKG 938
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 126/262 (48%), Gaps = 26/262 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGT---NPSHITFVTLLSGCA---------- 91
TV WTS ++ + ++ EA F++M + +P +T V+++S CA
Sbjct: 170 TVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDP--VTLVSVVSACAQLLNVKAGSC 227
Query: 92 --------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
+F + +V++ LL++YAK G +A +F M D W+ ++ + +
Sbjct: 228 VHGLVIRREFDGDLPLVNS-LLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNE 286
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
EAL F M EP+ +T++S L CA R L G +H+ + F+ + V
Sbjct: 287 AANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVST 346
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+D+Y + C + A +FQR+ K+ +VSW +++ G+A NG +++ F M +
Sbjct: 347 ALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQP 406
Query: 262 DEVSFTGALTACSHAGLIEDGL 283
D V+ L A S G+ + L
Sbjct: 407 DAVAVVKILAASSELGIFQQAL 428
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 5/185 (2%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMR--GCDFWTALLNGFVKRDYFEEALEYFRVM 153
++ +T L +YAK + A VFD W + L + + +EE L F +M
Sbjct: 34 HDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLM 93
Query: 154 Q-ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDNVRVCNTLMDVYSRFG 211
+G PD TI L CA +R L +G +H + K D ++ V + L+++YS+ G
Sbjct: 94 ICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCG 153
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGAL 270
+ A +VF+ + V W S++ G+ N EAL F+ M D V+ +
Sbjct: 154 QMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVV 213
Query: 271 TACSH 275
+AC+
Sbjct: 214 SACAQ 218
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
R+ +Y F I+ A VF+ + WN +I GFA +G +LE ++ M +
Sbjct: 753 RILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEK 812
Query: 258 VFKTDEVSFTGALTACSHAGL 278
K D+ +F AL +C AGL
Sbjct: 813 GLKPDKFAFPFALKSC--AGL 831
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 157/311 (50%), Gaps = 50/311 (16%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
T W S + ++A + F R+R Y P T ++L C +
Sbjct: 93 TFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHG 152
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM----------------------- 124
+N+ + ++ +YA G M A ++F+ M
Sbjct: 153 VVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEG 212
Query: 125 ----------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
R WT+++ G+V+ +EA+ F M+ +GV+ + +T+++VL CA+
Sbjct: 213 AYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACAD 272
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ L +G+ +H Y + FK NVR+ NTL+D+Y + GC+E A +VF+ M +RT+VSW+++
Sbjct: 273 LGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAM 332
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I G A++G EAL F+ M + + + V+F G L ACSH GLI +G ++F M + Y
Sbjct: 333 IGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYG 392
Query: 295 VSPQIEHHGCI 305
+ PQIEH+GC+
Sbjct: 393 IIPQIEHYGCM 403
>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 154/283 (54%), Gaps = 28/283 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEF--TRMRLYGTNPSHITFVTLLSGCADFP-------- 94
+ WTS IS R+ + + AL F + R +G +P TF T+L+ C +
Sbjct: 228 AICWTSIISAFTRND-VYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEV 286
Query: 95 ---------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
S NV V ++L+DMY K ++ + VFD M + WTALL G+ + F
Sbjct: 287 HAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDF 346
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH-RYVPKQDFKDNVRVCNT 202
E + FR G + D + +VL CA + + G +H +YV + ++D V +
Sbjct: 347 ESVIRIFR----EGKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTE-SA 401
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+Y++ GCI+FA ++F RM R L++WNS+I GFA NG GE + F+ M + + D
Sbjct: 402 LVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPD 461
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+SF G L ACSHAGL++ G +YF M ++Y + P IEH+ C+
Sbjct: 462 YISFVGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEHYNCM 504
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 120/252 (47%), Gaps = 21/252 (8%)
Query: 52 ISRHCRSGCILEA-----ALEFTRMR----LYGTNPSHITFVTLLSGCADFPSNNV---- 98
I ++C+SG + EA ++++TR+ Y + T + F S+ +
Sbjct: 32 IIQYCKSGSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTKAVSFTHGIQFHSHAIKSGL 91
Query: 99 ----MVSTALLDMYAKFG-RMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
V +LL +Y K G + A VFD + D WT+++ G+VK + +++LE F
Sbjct: 92 DTDRFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFL 151
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M G+EP+ T+ +V+ C+ + L +G H V + F N + L+D+Y R
Sbjct: 152 EMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNS 211
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGAL 270
++ A VF + + + W SII F N +AL +F ++ +K D +F L
Sbjct: 212 AVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVL 271
Query: 271 TACSHAGLIEDG 282
TAC + G ++ G
Sbjct: 272 TACGNLGRLKQG 283
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 24/219 (10%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--- 95
+ ++ V WT+ + +C++G E+ + R G +F T+L CA +
Sbjct: 324 RMSVKNLVSWTALLGGYCQNG-DFESVIRIFRE---GKKVDTYSFGTVLRACAGLAAVRQ 379
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK 139
+V+ +AL+D+YAK G +D A +F M R W +++ GF +
Sbjct: 380 GKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQ 439
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-LWMHRYVPKQDFKDNVR 198
E + F M G+ PDY++ + VL C++ + G + + K +
Sbjct: 440 NGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIE 499
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
N ++D+ R G +E A + + + R S ++++G
Sbjct: 500 HYNCMIDLLGRAGLLEEAENLIENANCRDEPSLWTVLLG 538
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 152/277 (54%), Gaps = 19/277 (6%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---------DFPSNNV 98
W + I + S + A + M L G +P+ TF +L C + S V
Sbjct: 75 WNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIV 134
Query: 99 MVS--------TALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
V L+ +YA G MD A V+FD M D W+ +++G+ + EAL+
Sbjct: 135 KVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALK 194
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
FR MQ V D T+ SV+ VC ++ L +G W+H Y+ K+ K +V + L+ +YS
Sbjct: 195 LFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYS 254
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G ++ A +VFQ M +R + +W+++I G+A++G +AL+ F+ M++ + V+FT
Sbjct: 255 KCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTS 314
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH+GL+E G Q F+ M Y+++PQI+H+GC+
Sbjct: 315 VLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCM 351
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 157/282 (55%), Gaps = 22/282 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------N 96
T V WTS IS + ++G +EA F++MR G P I V++L D +
Sbjct: 219 TIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIH 278
Query: 97 NVMVSTALLD----------MYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFE 144
++ L D YAK G + +A FD M+ + W A+++G+ K + E
Sbjct: 279 GFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAE 338
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA+ F M ++PD +T+ S + A V +L + WM YV K ++ ++ V +L+
Sbjct: 339 EAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLI 398
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDE 263
D+Y++ G +EFAR+VF R + +V W+++I+G+ ++G EA+ +++M Q GVF D
Sbjct: 399 DMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPND- 457
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F G LTAC+H+GL+++G + F MK + + P+ EH+ C+
Sbjct: 458 VTFIGLLTACNHSGLVKEGWELFHCMKD-FEIVPRNEHYSCV 498
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 121/252 (48%), Gaps = 19/252 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFP---------- 94
W + I + R+ + + MR G +P TF +L C DF
Sbjct: 122 WNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQII 181
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
++V V L+ +YAK G + +A VVFD + R WT++++G+ + EAL
Sbjct: 182 KYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALR 241
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M+ +GV+PD++ ++S+L +V L G +H +V K +D + +L Y+
Sbjct: 242 MFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYA 301
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G + A+ F +M ++ WN++I G+A NG EA+ F+ M K D V+
Sbjct: 302 KCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRS 361
Query: 269 ALTACSHAGLIE 280
A+ A + G +E
Sbjct: 362 AVLASAQVGSLE 373
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 2/189 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVM 153
+N + T L++ + G++ A +FD D W A++ + + + + + +E +R M
Sbjct: 86 HNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWM 145
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ +GV PD T VL C + G+ +H + K F +V V N L+ +Y++ G I
Sbjct: 146 RWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHI 205
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A+ VF ++ RT+VSW SII G+A NG EAL F+ M+ K D ++ L A
Sbjct: 206 GVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAY 265
Query: 274 SHAGLIEDG 282
+ +E G
Sbjct: 266 TDVDDLEQG 274
>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
Length = 607
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 142/266 (53%), Gaps = 22/266 (8%)
Query: 62 LEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------------SNNVMVSTA 103
L AA F M P+ TF LL CA P + + VS
Sbjct: 113 LRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHAAALKFGFATDQYVSNT 172
Query: 104 LLDMYAKFGRMDL--ATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVE 159
L+ MY+ FG L A VFD M W+A++ G+V+ +A+ FR MQ SGV
Sbjct: 173 LIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVR 232
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD +T+I VL A++ L + W+ R+V ++ +V +CN L+D ++ G ++ A V
Sbjct: 233 PDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAV 292
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
FQ M +RT+VSW S+I A+ G EA+ F M+ + D+V F G LTACSHAG++
Sbjct: 293 FQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMV 352
Query: 280 EDGLQYFDIMKKIYRVSPQIEHHGCI 305
++G YFD MK Y + P+IEH+GC+
Sbjct: 353 DEGYGYFDSMKMEYGIDPKIEHYGCM 378
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 21/220 (9%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
+ V W++ I + R G +A F M+ G P +T + +L+ A
Sbjct: 199 SVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVG 258
Query: 92 -----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+ +V + AL+D AK G +D A VF M R WT++++ +
Sbjct: 259 RFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGK 318
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTL 203
EA+ F M+ +GV PD + I VL C++ + G + + + +
Sbjct: 319 EAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCM 378
Query: 204 MDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
+D++ R G +E A + M K + W +++ +G
Sbjct: 379 VDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHG 418
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 153/281 (54%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V W S +S + ++G E F ++ +T +++L C +
Sbjct: 186 SIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIG 245
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
N ++T+L+DMYAK G++D A +FD M D W+A+++G+ + D +
Sbjct: 246 EYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCK 305
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL F MQ V P+ +T++SVL CA + G W+H Y+ K+ K V + L+
Sbjct: 306 EALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLI 365
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D Y++ G I+ + +VF+ M + + +W ++I G A NG ALE+F+ M + K ++V
Sbjct: 366 DFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDV 425
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L+ACSHA L++ G F+ M++ + + P+IEH+GC+
Sbjct: 426 TFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCM 466
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 127/253 (50%), Gaps = 20/253 (7%)
Query: 64 AALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLD 106
A L F +M TF ++L C+ + +N V L+
Sbjct: 105 ALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQ 164
Query: 107 MYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
MYA G++ +A VFD M R W ++L+G+ K ++E ++ FR + +E D +T
Sbjct: 165 MYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVT 224
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
+ISVL C + L IG + Y+ + + N + +L+D+Y++ G ++ AR++F M
Sbjct: 225 MISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMD 284
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG-L 283
KR +V+W+++I G+A EAL F+ MQKG +EV+ L +C+ G E G
Sbjct: 285 KRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKW 344
Query: 284 QYFDIMKKIYRVS 296
+F I KK +++
Sbjct: 345 VHFYIKKKKMKLT 357
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 78/153 (50%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
+ ++ G + + AL F+ M V+ D T SVL C+ ++ L G +H +
Sbjct: 89 YNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALIL 148
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
K FK N V NTL+ +Y+ G I AR VF M +R++V+WNS++ G+ NG E ++
Sbjct: 149 KSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVK 208
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
F + + + D+V+ L AC +E G
Sbjct: 209 LFRKILELRIEFDDVTMISVLMACGRLANLEIG 241
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 157/283 (55%), Gaps = 19/283 (6%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN---- 97
+ V WT I + +G I +A F M+ G P IT++ +++ CA + N
Sbjct: 322 VRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHARE 381
Query: 98 -------------VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
++VSTAL+ MYAK G + A VFD M R W+A++ +V+ Y
Sbjct: 382 IHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGY 441
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
EA E F +M+ S +EPD +T I++LN C ++ L +G+ ++ K D +V + N
Sbjct: 442 GTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNA 501
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+ + ++ G +E AR +F M +R +++WN++I G++++G EAL F+ M K F+ +
Sbjct: 502 LIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPN 561
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F G L+ACS AG +++G ++F + + + P ++ +GC+
Sbjct: 562 SVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCM 604
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 126/251 (50%), Gaps = 21/251 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC------------- 90
T V W + I+ + + G + EA F +M G PS ITF+++L C
Sbjct: 122 TVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVH 181
Query: 91 -----ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
A F S+ + TAL+ MY K G MD A VFD + R + ++ G+ K +
Sbjct: 182 AQVVTAGFVSD-FRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDW 240
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
E+A E F MQ G++P+ ++ +S+L+ C L G +H D++RV +L
Sbjct: 241 EKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSL 300
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+ +Y+ G IE AR+VF M R +VSW +I G+A NG + +A F MQ+ + D
Sbjct: 301 IRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDR 360
Query: 264 VSFTGALTACS 274
+++ + AC+
Sbjct: 361 ITYMHIMNACA 371
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 2/179 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
N+ L+ +Y+ G + A +FD + W AL+ G+ + + +EA FR M
Sbjct: 91 NIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMV 150
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
G+EP +T +SVL+ C++ L G +H V F + R+ L+ +Y + G ++
Sbjct: 151 DEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMD 210
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
ARQVF +H R + ++N ++ G+A +G +A E F MQ+ K +++SF L C
Sbjct: 211 DARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC 269
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
G D T + + C +R +G + ++ + + N+ NTL+ +YS G +
Sbjct: 51 GGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTE 110
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
ARQ+F + +T+V+WN++I G+A G V EA F M + ++F L ACS
Sbjct: 111 ARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSS 170
Query: 276 -AGL 278
AGL
Sbjct: 171 PAGL 174
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 145/269 (53%), Gaps = 26/269 (9%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV 98
KS + V W S I+ +C G + A F M TN + +++ T++ G
Sbjct: 211 KSCVRDLVSWNSMINGYC--GNLESARKLFDSM----TNKTMVSWTTMVVG--------- 255
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQIS 156
YA+ G +D+A +FD M D W A++ G+V + +EAL F MQ
Sbjct: 256 ---------YAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAM 306
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
+ PD +T++S L+ C+ + L +G+W+H Y+ K + NV + L+D+Y++ G I A
Sbjct: 307 NINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKA 366
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
QVFQ + R ++W +II G A++G A+ YF+ M DEV+F G L+AC H
Sbjct: 367 IQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHG 426
Query: 277 GLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
GL+E+G +YF M + +SP+++H+ C+
Sbjct: 427 GLVEEGRKYFSQMSSKFNLSPKLKHYSCM 455
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query: 130 WTALLNGFVKRDYFEEALE-YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
W + GF+ + EA+ Y RV+Q G +PD T + CA + + +G + +V
Sbjct: 118 WNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHV 177
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
F ++ V N ++ + G ++ AR++F + R LVSWNS+I G+ G + A
Sbjct: 178 LHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYC--GNLESAR 235
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
+ F+ M VS+T + + +GL++ + FD M
Sbjct: 236 KLFDSMTNKTM----VSWTTMVVGYAQSGLLDMAWKLFDEM 272
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 155/287 (54%), Gaps = 21/287 (7%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLLSGCA-----DF 93
+ + V W S IS + +S A F + G+ +P +T V+ LS C D
Sbjct: 190 ALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDL 249
Query: 94 PSN------------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK 139
+V V ++L+DMY+K G+++ A VFD + R WT+++ G+ +
Sbjct: 250 GKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQ 309
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
D F+EA+E FR MQI G D TI VL+ C + L G W+H Y + + ++
Sbjct: 310 SDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNA 369
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-GV 258
N L+ +YS+ G I+ A ++F + + + SW+++I G A+NG +AL F+ M+
Sbjct: 370 RNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISD 429
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ +E++F G L AC+H G ++ GL YF+ M +IY ++P IEH+GC+
Sbjct: 430 IRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCM 476
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 4/169 (2%)
Query: 118 TVVFDVMRGCDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR 176
T+ F + + F W + + + + E + + +M +G PD + VL CA +
Sbjct: 82 TLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLS 141
Query: 177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSI 234
L G +H K +V V N L+ +S G +E AR VF + R +VSWNS+
Sbjct: 142 LLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSM 201
Query: 235 IVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
I G+ + AL+ F L+ G DEV+ AL+ C GL++ G
Sbjct: 202 ISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLG 250
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%)
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
F+D V L S F+R +F ++HK + SWN + ++ + F E + +N
Sbjct: 57 FRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYN 116
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
LM + D SF L AC+ L+ G
Sbjct: 117 LMLRNGTLPDNYSFPFVLKACARLSLLHKG 146
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 157/311 (50%), Gaps = 50/311 (16%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
T W S + ++A + F R+R Y P T ++L C +
Sbjct: 93 TFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHG 152
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM----------------------- 124
+N+ + ++ +YA G M A ++F+ M
Sbjct: 153 VVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEG 212
Query: 125 ----------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
R WT+++ G+V+ +EA+ F M+ +GV+ + +T+++VL CA+
Sbjct: 213 AYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACAD 272
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ L +G+ +H Y + FK NVR+ NTL+D+Y + GC+E A +VF+ M +RT+VSW+++
Sbjct: 273 LGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAM 332
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I G A++G EAL F+ M + + + V+F G L ACSH GLI +G ++F M + Y
Sbjct: 333 IGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYG 392
Query: 295 VSPQIEHHGCI 305
+ PQIEH+GC+
Sbjct: 393 IIPQIEHYGCM 403
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 129/212 (60%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+V+ ST ++ Y+ G ++ A VF +R D WTA+++GFV+ + ALE FR M
Sbjct: 210 EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGM 269
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q V P+ TI+ VL+ C+ + L IG W+H Y+ K + + N+ V N L+++YSR G I
Sbjct: 270 QGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSI 329
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ A+ VF M R ++++N++I G ++NG +A+E F +M + V+F G L AC
Sbjct: 330 DEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNAC 389
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH GL++ G + F M + Y V PQIEH+GC+
Sbjct: 390 SHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCM 421
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 32/220 (14%)
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
LL +K +D A+ +F + +TAL++GFV + +A++ + M + PD
Sbjct: 87 LLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPD 146
Query: 162 YLTIISVLNVCA-----------NVRTLGIGLWMHRYVPK-------------------Q 191
+ S+L C + R L +GL +R V +
Sbjct: 147 NYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFE 206
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
+ ++V ++ YS G +E A VF R+ ++ V W ++I GF N + ALE F
Sbjct: 207 EMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAF 266
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
MQ + +E + L+ACS G +E G M+K
Sbjct: 267 RGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 306
>gi|242094978|ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
gi|241916202|gb|EER89346.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
Length = 657
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 125/211 (59%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+ +VSTAL +Y + M+ A +FD M + + W A+++G+ + E A+E F++MQ
Sbjct: 347 DALVSTALTTLYCRLNDMESARSIFDAMPEKTMESWNAMISGYAQNGLTEMAVELFQLMQ 406
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V+P+ TI S L+ CA + L +G W+HR + K++ + NV V L+D+Y++ G I
Sbjct: 407 ELNVQPNPTTISSTLSACAQLGALSLGTWVHRIIAKENLELNVYVMTALIDMYAKCGSIA 466
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
AR +F RM + +VSWN++I G+ ++G EAL+ + M +F L ACS
Sbjct: 467 EARSIFDRMDNKNVVSWNAMISGYGLHGRGAEALKLYKSMLDACILPTSSTFLSVLYACS 526
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H GL+++G + F +M YR+SP IEH C+
Sbjct: 527 HGGLVDEGQKVFRVMTNEYRISPGIEHCTCM 557
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 99/194 (51%), Gaps = 2/194 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG 157
V T L+ +Y+K G MD A +FD M D + AL++G+ E ++E F+ + S
Sbjct: 249 VVTGLMSLYSKCGDMDCARSLFDRMEDPDLVAYNALISGYSVNGMVESSVELFKELAASD 308
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
P+ T+++V+ V + + +H +V K + V L +Y R +E AR
Sbjct: 309 WRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESAR 368
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+F M ++T+ SWN++I G+A NG A+E F LMQ+ + + + + L+AC+ G
Sbjct: 369 SIFDAMPEKTMESWNAMISGYAQNGLTEMAVELFQLMQELNVQPNPTTISSTLSACAQLG 428
Query: 278 LIEDGLQYFDIMKK 291
+ G I+ K
Sbjct: 429 ALSLGTWVHRIIAK 442
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 7/186 (3%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYF-R 151
+ + V++AL +Y K ++D A VFD + D W LL G ALE F R
Sbjct: 146 AADTFVASALAKLYFKLSKVDDARKVFDAVPSPDTILWNTLLAGLPG----SVALEAFVR 201
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
++++ V PD T+ S L A + +G +H Y K ++ V LM +YS+ G
Sbjct: 202 MVEVGRVRPDSTTLASSLRAAAEASHVAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCG 261
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ AR +F RM LV++N++I G++VNG V ++E F + ++ + + +
Sbjct: 262 DMDCARSLFDRMEDPDLVAYNALISGYSVNGMVESSVELFKELAASDWRPNSSTLVAVIP 321
Query: 272 ACSHAG 277
S G
Sbjct: 322 VYSPFG 327
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 154/287 (53%), Gaps = 27/287 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
V WT I+ + ++ EA F M + P+ IT V L CA
Sbjct: 171 VAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQR 230
Query: 92 ----------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK 139
++N++++TA+L+MYAK GR+ +A +F+ M R W +++N + +
Sbjct: 231 IRKAGYDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQ 290
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
+ +EAL+ F M SGV PD T +SVL+VCA+ L +G +H Y+ K ++ +
Sbjct: 291 YERHQEALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISL 350
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-GV 258
L+D+Y++ G + A+++F + K+ +V W S+I G A++G EAL F MQ+
Sbjct: 351 ATALLDMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSS 410
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D +++ G L ACSH GL+E+ ++F +M ++Y + P EH+GC+
Sbjct: 411 LVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYGMVPGREHYGCM 457
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 119/255 (46%), Gaps = 28/255 (10%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----------- 96
W S I S + L + +M G +P H TF +L C
Sbjct: 72 WNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVIADQDCGKCIHSCIV 131
Query: 97 ------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
+ +T LL MY M VFD + + WT L+ G+VK + EAL+
Sbjct: 132 KSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALK 191
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-------KDNVRVCN 201
F M VEP+ +T+++ L CA+ R + G W+H+ + K + N+ +
Sbjct: 192 VFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILAT 251
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLMQKGVFK 260
++++Y++ G ++ AR +F +M +R +VSWNS+I + EAL+ +F++ GV+
Sbjct: 252 AILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYP 311
Query: 261 TDEVSFTGALTACSH 275
D+ +F L+ C+H
Sbjct: 312 -DKATFLSVLSVCAH 325
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 2/176 (1%)
Query: 109 AKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
++FG ++ A +V + W +++ GFV ++ +R M +G PD+ T
Sbjct: 49 SEFGDINYADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFP 108
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
VL C + G +H + K F+ + L+ +Y ++ +VF + K
Sbjct: 109 FVLKACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKW 168
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+V+W +I G+ N EAL+ F M + +E++ AL AC+H+ I+ G
Sbjct: 169 NVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTG 224
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD--VYSRFGCIEFARQVFQ 221
TI+S+L C ++R L +H + ++ + L+D V S FG I +A V +
Sbjct: 6 TILSLLAKCKSMRELKK---LHGLIVTTPTIKSIIPLSKLIDFCVDSEFGDINYADLVLR 62
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
++H ++ WNS+I GF + ++ + M + + D +F L AC
Sbjct: 63 QIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKAC 114
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 153/317 (48%), Gaps = 50/317 (15%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-- 96
+S + V W S I+ + R G EA + +M P +T + ++S A +
Sbjct: 215 ESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLAL 274
Query: 97 ---------------NVMVSTALLDMY-------------------------------AK 110
V ++ AL+DMY AK
Sbjct: 275 GRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAK 334
Query: 111 FGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
FG ++ A +F+ M D W AL+ GFV+ +EAL F MQ S V PD +T+++
Sbjct: 335 FGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNC 394
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ C+ + L +G+WMH YV K + NV + L+D+Y++ G I+ A QVF+ M R
Sbjct: 395 LSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNS 454
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
++W +II G A++G A+ YF+ M DE++F G L+AC H GL++ G YF
Sbjct: 455 LTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQ 514
Query: 289 MKKIYRVSPQIEHHGCI 305
M Y +SP+++H+ C+
Sbjct: 515 MTSKYGISPKLKHYSCL 531
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 127/288 (44%), Gaps = 51/288 (17%)
Query: 47 QWTSSISRHCRSGCILEAALEFTRMRLYGTN-PSHITFVTLLSGCADFP----------- 94
W +I + S + A L + M G+ P + T+ L CA F
Sbjct: 121 SWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGH 180
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEA 146
+++ V A++ + G + A +FD +R W +++NG+V+ +EA
Sbjct: 181 VIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEA 240
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ + M V PD +T+I V++ A + L +G +H+ + + V + N LMD+
Sbjct: 241 FDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDM 300
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA--------------------------V 240
Y + IE A+ +F+ M K+T+VSW ++++G+A +
Sbjct: 301 YIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALI 360
Query: 241 NGFV-----GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
GFV EAL F+ MQ D+++ L+ACS G ++ G+
Sbjct: 361 GGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGI 408
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 21/221 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V W + I ++ EA F M+ P IT V LS C+ +
Sbjct: 353 VVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHH 412
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
NV + TAL+DMYAK G + A VF+ M G + WTA++ G
Sbjct: 413 YVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHA 472
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLM 204
A+ YF M G+ PD +T I VL+ C + + G + ++ K ++ + L+
Sbjct: 473 AISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLV 532
Query: 205 DVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFV 244
D+ R G +E A ++ + M + V W ++ G ++G V
Sbjct: 533 DLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNV 573
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 151/279 (54%), Gaps = 22/279 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTR-MRLYGTNPSHITFVTLLSGCAD-------------- 92
WT+ I+ + + G E AL+ R M L P+H TF + L CA+
Sbjct: 343 WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHA 402
Query: 93 ----FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
F S N V+ +L+ MYA+ GR+D A FD++ + + +++ + K EEA
Sbjct: 403 VKLGFSSVNC-VANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEA 461
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F ++ G+ T S+L+ A++ T+G G +H V K K N VCN L+ +
Sbjct: 462 LELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISM 521
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
YSR G IE A QVF+ M R ++SW SII GFA +GF +ALE F+ M + + + V++
Sbjct: 522 YSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTY 581
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH GL+ +G ++F M + V P++EH+ C+
Sbjct: 582 IAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACM 620
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 27/267 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC--ADFPS-------- 95
+ W++ +S + A L F M G P+ F C A+F S
Sbjct: 134 ISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGF 193
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATV--VFDVM--RGCDFWTALLNGFVKRDYF 143
++V V L+DM+ K GR DL + VF+ M R WT ++ ++ Y
Sbjct: 194 VVKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYA 252
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EA++ F M +SG EPD T+ V++ CAN+ L +G +H + + V L
Sbjct: 253 GEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCL 312
Query: 204 MDVYSRF---GCIEFARQVFQRMHKRTLVSWNSIIVGFA-VNGFVGEALEYFNLMQKGVF 259
+++Y++ G + AR++F ++ + SW ++I G+ G+ EAL+ F M
Sbjct: 313 INMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHV 372
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYF 286
+ +F+ L AC++ + G Q F
Sbjct: 373 IPNHFTFSSTLKACANLAALRIGEQVF 399
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 1/150 (0%)
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+A+ M G PD T L C R+ IG +H + + D + + N+
Sbjct: 47 LHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNS 106
Query: 203 LMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+ +YS+ G E A +FQ M R L+SW++++ FA N AL F M + +
Sbjct: 107 LISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP 166
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+E F A ACS A + G F + K
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVVK 196
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 153/317 (48%), Gaps = 50/317 (15%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-- 96
+S + V W S I+ + R G EA + +M P +T + ++S A +
Sbjct: 215 ESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLAL 274
Query: 97 ---------------NVMVSTALLDMY-------------------------------AK 110
V ++ AL+DMY AK
Sbjct: 275 GRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAK 334
Query: 111 FGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
FG ++ A +F+ M D W AL+ GFV+ +EAL F MQ S V PD +T+++
Sbjct: 335 FGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNC 394
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ C+ + L +G+WMH YV K + NV + L+D+Y++ G I+ A QVF+ M R
Sbjct: 395 LSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNS 454
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
++W +II G A++G A+ YF+ M DE++F G L+AC H GL++ G YF
Sbjct: 455 LTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQ 514
Query: 289 MKKIYRVSPQIEHHGCI 305
M Y +SP+++H+ C+
Sbjct: 515 MTSKYGISPKLKHYSCL 531
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 127/288 (44%), Gaps = 51/288 (17%)
Query: 47 QWTSSISRHCRSGCILEAALEFTRMRLYGTN-PSHITFVTLLSGCADFP----------- 94
W +I + S + A L + M G+ P + T+ L CA F
Sbjct: 121 SWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGH 180
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEA 146
+++ V A++ + G + A +FD +R W +++NG+V+ +EA
Sbjct: 181 VIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEA 240
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ + M V PD +T+I V++ A + L +G +H+ + + V + N LMD+
Sbjct: 241 FDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDM 300
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA--------------------------V 240
Y + IE A+ +F+ M K+T+VSW ++++G+A +
Sbjct: 301 YIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALI 360
Query: 241 NGFV-----GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
GFV EAL F+ MQ D+++ L+ACS G ++ G+
Sbjct: 361 GGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGI 408
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 21/221 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V W + I ++ EA F M+ P IT V LS C+ +
Sbjct: 353 VVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHH 412
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
NV + TAL+DMYAK G + A VF+ M G + WTA++ G
Sbjct: 413 YVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHA 472
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLM 204
A+ YF M G+ PD +T I VL+ C + + G + ++ K ++ + L+
Sbjct: 473 AISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLV 532
Query: 205 DVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFV 244
D+ R G +E A ++ + M + V W ++ G ++G V
Sbjct: 533 DLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNV 573
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 142/257 (55%), Gaps = 19/257 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAK 110
F +M G NP+ TF+++L C+ N V TAL+DMYAK
Sbjct: 520 FNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAK 579
Query: 111 FGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
++ A +F+ + R WT ++ G+ + E+A++ F MQ GV+P+ T+ S
Sbjct: 580 NRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASS 639
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ C+ + TL G +H K ++ V + L+D+Y++ GC+E A VF + R
Sbjct: 640 LSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDT 699
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
VSWN+II G++ +G G+AL+ F M DEV+F G L+ACSH GLIE+G ++F+
Sbjct: 700 VSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNS 759
Query: 289 MKKIYRVSPQIEHHGCI 305
+ KIY ++P IEH+ C+
Sbjct: 760 LSKIYGITPTIEHYACM 776
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 122/266 (45%), Gaps = 21/266 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V W++ I+ + G EAA F RMR G P+ T +L+S D
Sbjct: 397 VSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHAC 456
Query: 93 -----FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
F +N V AL+ MY K G + VF+ D W ALL+GF + +
Sbjct: 457 VCKYGFEYDNT-VCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDT 515
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
L F M G P+ T IS+L C+++ + +G +H + K N V L+D
Sbjct: 516 GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVD 575
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ +E A +F R+ KR L +W I+ G+A +G +A++ F MQ+ K +E +
Sbjct: 576 MYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFT 635
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKK 291
+L+ CS ++ G Q + K
Sbjct: 636 LASSLSGCSRIATLDSGRQLHSMAIK 661
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 110/253 (43%), Gaps = 23/253 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
V WT+ I+ G A F MR G + T+ T L C+
Sbjct: 195 VSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAE 254
Query: 92 -----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
DF +++ V +AL+D+YAK G M LA VF M + W ALLNGF + E
Sbjct: 255 AIKVGDF--SDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAE 312
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+ L F M S + T+ +VL CAN L G +H + + + + L+
Sbjct: 313 KVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLV 372
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+YS+ G A +VF R+ +VSW++II G EA E F M+ ++
Sbjct: 373 DMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQF 432
Query: 265 SFTGALTACSHAG 277
+ ++A + G
Sbjct: 433 TLASLVSAATDLG 445
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 4/183 (2%)
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
+L+++YAK G + A VF + D WTAL+ GFV Y A+ F M+ GVE
Sbjct: 168 SLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEA 227
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
+ T + L C+ L G +H K DF D + V + L+D+Y++ G + A +V
Sbjct: 228 NEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSD-LFVGSALVDLYAKCGEMVLAERV 286
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F M K+ VSWN+++ GFA G + L F M + + + L C+++G +
Sbjct: 287 FLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNL 346
Query: 280 EDG 282
G
Sbjct: 347 RAG 349
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 62/117 (52%)
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
+L CA+ L G +H V K + + N+L++VY++ G +A +VF + +R
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+VSW ++I GF G+ A+ F M++ + +E ++ AL ACS +E G Q
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 126/213 (59%), Gaps = 3/213 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++V+ +++ YAK G +D + +FD M R W ++++G+V+ EALE F M
Sbjct: 195 HDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKM 254
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q+ G E T++S+LN CA++ L G W+H Y+ + F+ NV V ++D+Y + G +
Sbjct: 255 QVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSV 314
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG-VFKTDEVSFTGALTA 272
E A +VF+ +R L WNSII+G A+NG EA E+F+ ++ + K D VSF G LTA
Sbjct: 315 ENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTA 374
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
C H G I YF++M Y + P I+H+ CI
Sbjct: 375 CKHLGAINKARDYFELMMNKYEIEPSIKHYTCI 407
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 30/218 (13%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T+V W S IS + R+G ++EA F +M++ G S T V+LL+ CA +
Sbjct: 227 TSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVH 286
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDV--MRGCDFWTALLNGFVKRDYFE 144
NV+V TA++DMY K G ++ A VF+ RG W +++ G +
Sbjct: 287 DYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHER 346
Query: 145 EALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIG-----LWMHRYVPKQDFKDNVR 198
EA E+F ++ S ++PD ++ I VL C ++ + L M++Y + + +++
Sbjct: 347 EAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKY----EIEPSIK 402
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
++DV + G +E A ++ + M K + W S++
Sbjct: 403 HYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLL 440
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 101/233 (43%), Gaps = 37/233 (15%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
N + + AL + G ++ A +F M + W ++ F + + A+ F M
Sbjct: 59 NPIASTRALTFCASPSGNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDM 118
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM--------- 204
S ++P YLT SV A + G +H V K +++ +CNT++
Sbjct: 119 LYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLM 178
Query: 205 -----------------DV---------YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF 238
DV Y++ G I+ +R +F M RT VSWNS+I G+
Sbjct: 179 SEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGY 238
Query: 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
NG + EALE FN MQ F+ E + L AC+H G ++ G D +K+
Sbjct: 239 VRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKR 291
>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
Length = 440
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 125/209 (59%), Gaps = 2/209 (0%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQIS 156
+V+ AL+DMYAK G D A VF+ M D WT+L+ G V +EEAL F M+I
Sbjct: 3 LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
G+ PD + I +VL+ CA + L G +H K ++ V N+L+ +Y++ GCIE A
Sbjct: 63 GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
+VF M + +++W ++IVG+A NG E+L ++N M K D ++F G L ACSHA
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182
Query: 277 GLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
GL+E G YF M+++Y + P EH+ C+
Sbjct: 183 GLVEHGRSYFQSMEEVYGIKPGPEHYACM 211
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 21/227 (9%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---- 94
K T + WTS ++ +G EA F MR+ G +P I +LS CA+
Sbjct: 27 KMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEF 86
Query: 95 -------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
+++ V +L+ MYAK G ++ A VFD M D WTAL+ G+ +
Sbjct: 87 GKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQ 146
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVR 198
E+L ++ M SGV+PD++T I +L C++ + G + K
Sbjct: 147 NGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPE 206
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS-WNSIIVGFAVNGFV 244
++D+ R G + A+++ +M + + W +++ V+G V
Sbjct: 207 HYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNV 253
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 158/281 (56%), Gaps = 20/281 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG---CADFPSNNVMV 100
T V WT+ +S + ++G +EA F++MR P + V++L+ D +
Sbjct: 186 TIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIH 245
Query: 101 ST--------------ALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++ +L MYAK G++ A ++FD M+ + W A+++G+ K Y
Sbjct: 246 ASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAR 305
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA++ F M V PD ++I S ++ CA V +L M+ YV + D++D+V + + L+
Sbjct: 306 EAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALI 365
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D++++ G +E AR VF R R +V W+++IVG+ ++G EA+ + M++G ++V
Sbjct: 366 DMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDV 425
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L AC+H+G++ +G +F+ M ++++PQ +H+ C+
Sbjct: 426 TFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACV 465
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 128/265 (48%), Gaps = 21/265 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------- 94
W + I + R+ +A L ++ M+L +P TF LL C+
Sbjct: 87 WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVF 146
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKRDYFEEA 146
+V V L+ +YAK R+ A VF+ + R WTA+++ + + EA
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEA 206
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F M+ V+PD++ ++SVLN ++ L G +H V K + + +L +
Sbjct: 207 LEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM 266
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G + A+ +F +M L+ WN++I G+A NG+ EA++ F+ M + D +S
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISI 326
Query: 267 TGALTACSHAGLIEDGLQYFDIMKK 291
T A++AC+ G +E ++ + +
Sbjct: 327 TSAISACAQVGSLEQARSMYEYVGR 351
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 107/203 (52%), Gaps = 7/203 (3%)
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVE 159
T L+ + FG + A VFD + W A++ G+ + ++F++AL + MQ++ V
Sbjct: 57 TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD T +L C+ + L +G ++H V + F +V V N L+ +Y++ + AR V
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176
Query: 220 FQ--RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
F+ + +RT+VSW +I+ +A NG EALE F+ M+K K D V+ L A +
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFT--- 233
Query: 278 LIEDGLQYFDIMKKIYRVSPQIE 300
++D Q I + ++ +IE
Sbjct: 234 CLQDLKQGRSIHASVVKMGLEIE 256
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 135/213 (63%), Gaps = 3/213 (1%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
S++ V ++L++ Y+K + +A VFD + R W+A+++G+ + EAL FR
Sbjct: 124 SSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFRE 183
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
MQ+ G+EPD ++++ VL+ CA V L IG W+H Y+ K+ ++ + L+++Y++ GC
Sbjct: 184 MQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGC 243
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
IE AR++F M + +W+S+IVG A++G +AL F+ M++ K + V+F G L+A
Sbjct: 244 IEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSA 303
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
C+H GL+ DG +Y+ M ++ + P +EH+GC+
Sbjct: 304 CAHGGLVSDGKRYWSSMLEL-GIEPSMEHYGCM 335
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 22/196 (11%)
Query: 109 AKFGRMDLATVVFD------------VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQIS 156
+ FG D A +F V+RGC +T + + +E + F+ M
Sbjct: 35 SPFGNFDYARKIFSQIPNPGIFAYNSVIRGC-LYTKIPS--------KEPIHLFKDMVGK 85
Query: 157 GV-EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
G P+ T+ VL C+ + L G +H + + F + V ++L++ YS+ I
Sbjct: 86 GYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITI 145
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
AR+VF + +R LV W++++ G+A G + EAL F MQ + DEVS G L+AC+
Sbjct: 146 ARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAM 205
Query: 276 AGLIEDGLQYFDIMKK 291
G ++ G +KK
Sbjct: 206 VGALDIGKWVHAYIKK 221
>gi|242084478|ref|XP_002442664.1| hypothetical protein SORBIDRAFT_08g000860 [Sorghum bicolor]
gi|241943357|gb|EES16502.1| hypothetical protein SORBIDRAFT_08g000860 [Sorghum bicolor]
Length = 982
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 143/280 (51%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
TV WT+ I+ + +G EA R G P +T V +L+ CA
Sbjct: 655 TVSWTALITAYMDAGRAQEAVGVARRAFASGMRPDSVTAVRVLTACARVADLVNGEAVWK 714
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ N+ V+TA LD+Y K G MD A VFD M+ D W A++ G+ + +E
Sbjct: 715 VAEQEGIAGNMFVATAALDLYVKCGEMDKAREVFDKMKNKDVVTWAAMVGGYASNGHPQE 774
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
ALE F MQ+ G+ PD T+ L+ C + L +G + + + DN + L+D
Sbjct: 775 ALELFFAMQVEGMRPDCYTVSGALSACTRLGALDLGRRVVGMLHWDEVLDNPVLGTALID 834
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
Y++ G A VFQ+M KR ++ WN++++G + G A M K ++ +
Sbjct: 835 TYAKCGSTGEAWMVFQQMRKRDIIVWNAMVLGLGMTGHEKIAFALVGQMNKLGMTLNDNT 894
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L +C+H GL++DG +YF M ++Y +SP+IEH+GC+
Sbjct: 895 FIGLLCSCTHTGLVKDGQRYFHNMTQLYGISPRIEHYGCM 934
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 22/240 (9%)
Query: 65 ALEFTRMRLYG--TNPSHITFVTLLSGCADFPS------------------NNVMVSTAL 104
L +RL+ +PSH+TF + + P+ +N V T+L
Sbjct: 571 GLHLHALRLHSLLPDPSHLTFPFAIKAASRLPNPLTAGVQLHARSLKLPSHSNAHVLTSL 630
Query: 105 LDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
L++YAK GR+ A FD M G WTAL+ ++ +EA+ R SG+ PD
Sbjct: 631 LNLYAKCGRLLDAQKAFDEMLHPGTVSWTALITAYMDAGRAQEAVGVARRAFASGMRPDS 690
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
+T + VL CA V L G + + ++ N+ V +D+Y + G ++ AR+VF +
Sbjct: 691 VTAVRVLTACARVADLVNGEAVWKVAEQEGIAGNMFVATAALDLYVKCGEMDKAREVFDK 750
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M + +V+W +++ G+A NG EALE F MQ + D + +GAL+AC+ G ++ G
Sbjct: 751 MKNKDVVTWAAMVGGYASNGHPQEALELFFAMQVEGMRPDCYTVSGALSACTRLGALDLG 810
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 158/281 (56%), Gaps = 20/281 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG---CADFPSNNVMV 100
T V WT+ +S + ++G +EA F++MR P + V++L+ D +
Sbjct: 186 TIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIH 245
Query: 101 ST--------------ALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++ +L MYAK G++ A ++FD M+ + W A+++G+ K + +
Sbjct: 246 ASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAK 305
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+A++ F M V PD ++I S ++ CA V +L WM YV + D++D+V + + L+
Sbjct: 306 DAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALI 365
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D++++ G +E AR VF R R +V W+++IVG+ ++G EA+ + M++ ++V
Sbjct: 366 DMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDV 425
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L AC+H+G++ +G +F+ M ++++PQ +H+ CI
Sbjct: 426 TFLGLLIACNHSGMVREGWWFFNRMAD-HKINPQQQHYACI 465
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 21/254 (8%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------- 94
W + I + R+ +A L +++M+L +P TF LL C
Sbjct: 87 WNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVF 146
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKRDYFEEA 146
+V V L+ +YAK R+ A VF+ + R WTA+++ + + EA
Sbjct: 147 RLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEA 206
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F M+ V+PD + ++SVLN ++ L G +H V K + + +L +
Sbjct: 207 LEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTM 266
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G + A+ +F +M L+ WN++I G+A NGF +A++ F+ M + D +S
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISI 326
Query: 267 TGALTACSHAGLIE 280
T A++AC+ G +E
Sbjct: 327 TSAISACAQVGSLE 340
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 11/206 (5%)
Query: 102 TALLDMYAKFGRMDLATVVFDVM-RGCDF-WTALLNGFVKRDYFEEALEYFRVMQISGVE 159
T L+ + +G + A VFD + R F W A++ G+ + ++F++AL + MQ++ V
Sbjct: 57 TKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVS 116
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS---RFGCIEFA 216
PD T +L C + L +G ++H V + F+ +V V N L+ +Y+ R GC A
Sbjct: 117 PDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGC---A 173
Query: 217 RQVFQ--RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
R VF+ + +RT+VSW +I+ +A NG EALE F+ M+K K D V+ L A +
Sbjct: 174 RTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFT 233
Query: 275 HAGLIEDGLQ-YFDIMKKIYRVSPQI 299
+E G + +MK P +
Sbjct: 234 CLQDLEQGRSIHASVMKMGLETEPDL 259
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 154/311 (49%), Gaps = 51/311 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFP-------- 94
V W S I+ + GC EA F M P+ IT V +LS CA DF
Sbjct: 203 VSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSY 262
Query: 95 ------SNNVMVSTALLDMY-------------------------------AKFGRMDLA 117
++ +S A+LDMY AK G D A
Sbjct: 263 IERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAA 322
Query: 118 TVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVCAN 174
+FD M D W AL++ + + +EALE F +Q+S +PD +T++S L+ CA
Sbjct: 323 QGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQ 382
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ + +G W+H Y+ KQ K N + +L+D+Y + G ++ A VF + ++ + W+++
Sbjct: 383 LGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAM 442
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I G A++G +A+ F+ MQ+ K + V+FT L ACSH GL+E+G +F+ M+ +Y
Sbjct: 443 IAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYG 502
Query: 295 VSPQIEHHGCI 305
V P ++H+ C+
Sbjct: 503 VLPGVKHYACM 513
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 131/287 (45%), Gaps = 52/287 (18%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTN-PSHITFVTLLSGCADFPS----------- 95
W + I + S ++ L F RM + P TF L+ ++
Sbjct: 103 WNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMV 162
Query: 96 ------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEAL 147
++V + +L+ YAK G + L VF + R W +++ FV+ EEAL
Sbjct: 163 IKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEAL 222
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
E F+ M+ V+P+ +T++ VL+ CA G W+H Y+ + +++ + N ++D+Y
Sbjct: 223 ELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMY 282
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAV----------------------NGFVG 245
++ G +E A+++F +M ++ +VSW +++VG+A N +
Sbjct: 283 TKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALIS 342
Query: 246 ---------EALEYFNLMQ-KGVFKTDEVSFTGALTACSHAGLIEDG 282
EALE F+ +Q K DEV+ L+AC+ G ++ G
Sbjct: 343 AYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG 389
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 123/199 (61%), Gaps = 2/199 (1%)
Query: 109 AKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
AK G +D + +FD M R W ++++G+V++ F EA+E F MQ G++P T++
Sbjct: 174 AKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMV 233
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S+LN CA + L G W+H Y+ K +F N V ++D+YS+ G I+ A QVF+ K+
Sbjct: 234 SLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKK 293
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
L WNS+I+G A++G EA+ F+ ++ K D VSF G LTAC+HAG+++ YF
Sbjct: 294 GLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYF 353
Query: 287 DIMKKIYRVSPQIEHHGCI 305
+M + Y++ P I+H+ C+
Sbjct: 354 LLMSETYKIEPSIKHYSCM 372
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 29/222 (13%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------- 91
K + TV W S IS + R G EA F+RM+ G PS T V+LL+ CA
Sbjct: 188 KMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQ 247
Query: 92 -----------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFV 138
+F N++++ TA++DMY+K G +D A VF +G W +L+ G
Sbjct: 248 GEWIHDYIVKNNFALNSIVI-TAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLA 306
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV----RTLGIGLWMHRYVPKQDFK 194
EA+ F ++ S ++PD+++ I VL C + R L M +
Sbjct: 307 MSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSE---TYKIE 363
Query: 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
+++ + ++DV R G +E A ++ + M + W S++
Sbjct: 364 PSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLL 405
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 35/215 (16%)
Query: 112 GRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG--VEPDYLTIIS 167
G ++ A +VF +R + W ++ GF + A+ F M + +P LT S
Sbjct: 43 GDINYAYLVFTQIRNPNLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPS 102
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY-------------------- 207
V A + G +H V K +++ + NT++++Y
Sbjct: 103 VFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFD 162
Query: 208 -----------SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
++ G I+ +R++F +M R VSWNS+I G+ G EA+E F+ MQ+
Sbjct: 163 VVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQE 222
Query: 257 GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
K E + L AC+ G + G D + K
Sbjct: 223 EGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVK 257
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 129/216 (59%), Gaps = 3/216 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P+ + M A+L+ YA G +++ VFD M R W L+ G+VK F E LE F
Sbjct: 233 MPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESF 292
Query: 151 RVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
+ M + G V P+ T+++VL+ C+ + L +G W+H Y +K N+ V N L+D+Y++
Sbjct: 293 KRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAK 352
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G IE A VF + ++ ++SWN+II G A++G +AL F+ M+ + D V+F G
Sbjct: 353 CGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGI 412
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+AC+H GL++DG YF M Y + PQIEH+GC+
Sbjct: 413 LSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCM 448
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 18/188 (9%)
Query: 83 FVTLLSGCADFP--------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD 128
F+TLL C ++ +N V+ + ++F R+ A +FD + +
Sbjct: 15 FITLLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPN 74
Query: 129 F--WTALLNGFVKRDYFEEALEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185
W A+ G+++ + + + F + +I+G+ P+ T ++ C + + G +H
Sbjct: 75 TATWNAMFRGYLQNGHHRDTVVLFGELNRIAGM-PNCFTFPMIIKSCGKLEGVREGEEVH 133
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
K FK N V +L+D+YS+ GC+E A +VF MH+R +V W +II G+ + G V
Sbjct: 134 CCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVV 193
Query: 246 EALEYFNL 253
F+L
Sbjct: 194 SGRRLFDL 201
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 124/211 (58%), Gaps = 3/211 (1%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
+ V +LL +YA G + A VFD M D W +++NGF + EEAL + M +
Sbjct: 156 IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDL 215
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
G++PD TI+S+L+ CA + L +G H Y+ K N+ N L+D+Y+R G +E
Sbjct: 216 KGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 275
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTACS 274
A+ +F M + VSW S+IVG AVNG EA+E F N+ K E++F G L ACS
Sbjct: 276 AKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACS 335
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H G++++G +YF M + Y++ P+IEH GC+
Sbjct: 336 HCGMVKEGFEYFRRMSEEYKIEPRIEHFGCM 366
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 1/165 (0%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
W L+ G+ + A+ +R M+ SG VEPD T +L + + +G +H
Sbjct: 87 IWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSV 146
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
V + F + V N+L+ +Y+ G + A +VF +M ++ LV+WNS+I GFA NG EA
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
L + M K D + L+AC+ G + G ++ M K+
Sbjct: 207 LALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKV 251
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 24/220 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I+ +G EA +T M L G P T V+LLS CA +
Sbjct: 188 VAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVY 247
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N+ S LLD+YA+ GR++ A +FD M + WT+L+ G +EA
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEA 307
Query: 147 LEYFRVMQI-SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN--TL 203
+E F+ M+ G+ P +T + +L C++ + G R + +++K R+ + +
Sbjct: 308 IELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRM-SEEYKIEPRIEHFGCM 366
Query: 204 MDVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNG 242
+D+ +R G ++ A + +M + +V W +++ V+G
Sbjct: 367 VDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHG 406
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 148/281 (52%), Gaps = 23/281 (8%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD--------------- 92
+T+ I SG +A ++RM P + ++L C
Sbjct: 98 YTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRAL 157
Query: 93 --FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM------RGCDFWTALLNGFVKRDYFE 144
S+N +V ++++Y K G + A VF+ M + WTA+++GFV+ +
Sbjct: 158 KLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMN 217
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
ALE FR MQ V P+ TI+ VL+ C+ + L IG W+H Y+ K + + N+ V N L+
Sbjct: 218 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALI 277
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
++YSR G I+ A+ VF M R ++++N++I G ++NG +A+E F +M + V
Sbjct: 278 NMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNV 337
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L ACSH GL++ G + F M + Y V PQIEH+GC+
Sbjct: 338 TFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCM 378
>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 642
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 149/280 (53%), Gaps = 18/280 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPS----- 95
T+ W S I+ + G EA F RM G P+ IT ++ S CA D +
Sbjct: 215 TSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVR 274
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
NV+V TAL++MY K +D A FD M D W+ ++ G+ + E
Sbjct: 275 DLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLE 334
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+LE F M+ + P+ +T++ V++ CA + + + + Y Q + + L+D
Sbjct: 335 SLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALID 394
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y+R G + AR VF RM ++ +++WNS+I G A+NGF +A+ + M + + +E++
Sbjct: 395 MYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEIT 454
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L AC+HAGL++ G+ +F+ MK+ + VSPQ+EH CI
Sbjct: 455 FVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACI 494
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 100/191 (52%), Gaps = 3/191 (1%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ P + + L+ Y+K G +D A +FD M R W +++ + F EAL
Sbjct: 179 EMPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTL 238
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F M G P+ +TI SV ++CA L G + + + D + NV V LM++Y +
Sbjct: 239 FDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQ-NVIVHTALMEMYVK 297
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
I+ AR+ F RM +R +V+W+++I G+A NG E+LE F M+ + +EV+ G
Sbjct: 298 CRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGV 357
Query: 270 LTACSHAGLIE 280
++AC+ G E
Sbjct: 358 ISACAQLGSDE 368
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
KD + + N L+ YS+ G ++ AR++F M +RT SWNS+I +A G EAL F+
Sbjct: 183 KDPIPI-NCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDR 241
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
M + + ++ T + C+ +G ++ G + D++ +
Sbjct: 242 MLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGE 279
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 156/311 (50%), Gaps = 53/311 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLY--GTNPSHITFVTLLSGCADFPS---------- 95
W + I H G A F R NP+ + +L+ CA +
Sbjct: 79 WNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGLEAIADGLKVHAV 138
Query: 96 -------NNVMVSTALLDMYAKF-------------------------------GRMDLA 117
NN+ + T+L+DMY KF G ++ A
Sbjct: 139 VIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSGYCLCGDLESA 198
Query: 118 TVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ-ISGVEPDYLTIISVLNVCAN 174
VFD M R W A++ G+V+ + +A+E F MQ + GV PD +T++SVL+ CA+
Sbjct: 199 RRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVLSACAH 258
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
V L G W+ R+V + N+ + N L+D+Y++ G +E AR++F M +R ++SW+++
Sbjct: 259 VGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEEARRIFDGMRERDVISWSTM 318
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I G +G EA Y++ M + K +EV+F G L+ACSHAGL++ G++ F M + YR
Sbjct: 319 ICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSACSHAGLVDKGIELFSRMIQEYR 378
Query: 295 VSPQIEHHGCI 305
+ P++ H+GC+
Sbjct: 379 IVPKVGHYGCV 389
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V V+ L+ +Y G +DLA VFD M R W ++++ V+ ++ AL+ FR MQ
Sbjct: 176 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 235
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ---DFKDNVRVCNTLMDVYSRFG 211
S EPD T+ SVL+ CA + +L +G W H ++ ++ D +V V N+L+++Y + G
Sbjct: 236 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 294
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM--QKGVFKTDEVSFTGA 269
+ A QVFQ M KR L SWN++I+GFA +G EA+ +F+ M ++ + + V+F G
Sbjct: 295 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 354
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L AC+H G + G QYFD+M + Y + P +EH+GCI
Sbjct: 355 LIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCI 390
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 108/260 (41%), Gaps = 26/260 (10%)
Query: 29 PQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS 88
P I ++ S ST Q S++ C L+ FT Y P+
Sbjct: 22 PHIPPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPA--------- 72
Query: 89 GCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGF---VKRDYF 143
+ + +L + + F ++ A VFD + W L+ V R
Sbjct: 73 --------TLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRK-- 122
Query: 144 EEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
EEA +R M G PD T VL CA + G +H + K F +V V N
Sbjct: 123 EEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNG 182
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+ +Y GC++ AR+VF M +R+LVSWNS+I G AL+ F MQ+ F+ D
Sbjct: 183 LIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPD 241
Query: 263 EVSFTGALTACSHAGLIEDG 282
+ L+AC+ G + G
Sbjct: 242 GYTMQSVLSACAGLGSLSLG 261
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 140/258 (54%), Gaps = 20/258 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSNNV-----------------MVSTALLDMYAK 110
+ RM +PS+ TF +++ CAD + + V AL+ Y+K
Sbjct: 95 YRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSK 154
Query: 111 FGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G M+ A VFD M + W +L++GF + E+A+ F M+ SG EPD T +S+
Sbjct: 155 CGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSL 214
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ CA + +G W+H+Y+ + NV++ L+++YSR G + AR+VF +M + +
Sbjct: 215 LSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNV 274
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFD 287
+W ++I + +G+ +A++ FN M+ + V+F L+AC+HAGL+EDG +
Sbjct: 275 AAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYK 334
Query: 288 IMKKIYRVSPQIEHHGCI 305
M + YR+ P +EHH CI
Sbjct: 335 RMTESYRLIPGVEHHVCI 352
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 33/207 (15%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V W S +S ++G +A F +MR G P TFV+LLS CA +
Sbjct: 172 SVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVH 231
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
NV + TAL+++Y++ G + A VFD M+ + WTA+++ + Y +
Sbjct: 232 QYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGK 291
Query: 145 EALEYFRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWM-------HRYVPKQDFKDN 196
+A++ F M+ G P+ +T ++VL+ CA+ + G + +R +P +
Sbjct: 292 QAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEH--- 348
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRM 223
VC ++D+ R G ++ A + Q++
Sbjct: 349 -HVC--IVDMLGRAGFLDEAYRFIQQL 372
>gi|357153075|ref|XP_003576330.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g18840-like [Brachypodium distachyon]
Length = 535
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 127/216 (58%), Gaps = 5/216 (2%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
+ P +V A + +A+ G M+ A VF M G D W +L+ + K AL+
Sbjct: 216 EMPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGSYAKLGQCARALKV 275
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
FR MQ SGVEP LT++SVL C + L +G +H Y+ + + V N L+D+Y++
Sbjct: 276 FREMQDSGVEPTELTLVSVLGACTEIGELELGKGVHGYLSSKGVLADGYVGNALVDMYAK 335
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G +E ARQVF+ M R + WN++IVG +V+G+ EALE FN+M+ + D V+F G
Sbjct: 336 CGSLELARQVFESMSTRDITCWNAMIVGLSVHGYSREALELFNVMR---VEPDHVTFLGV 392
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L CSH+GL+++G F M + Y++ P ++H+GC+
Sbjct: 393 LIVCSHSGLVDEGRVXFRSMTEDYKIVPGVKHYGCM 428
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 170 NVCANVRTLG-----IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
N+CA G G+ +H V K + V N L+ +Y + G + AR+VF M
Sbjct: 128 NLCAAADGGGEGFVSKGMELHGCVLKLGCGADRYVQNALVSMYGKLGRLGDARKVFDGMP 187
Query: 225 KRTLVSWNSIIVGFAVNGFVGEA 247
R VSWN+++ A +G VG++
Sbjct: 188 ARNAVSWNALV---AAHGDVGDS 207
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 151/282 (53%), Gaps = 22/282 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFP---------- 94
V W S I+ + ++GC EA F M R G P ++ V++L C +
Sbjct: 183 VSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEG 242
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ N + +AL+ MYAK G + A +FD M D W A+++G+ + +E
Sbjct: 243 FVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADE 302
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F M+ V + +T+ +VL+ CA + L +G + Y ++ F+ ++ V L+D
Sbjct: 303 AISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALID 362
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM--QKGVFKTDE 263
+Y++ G + A++VF+ M ++ SWN++I A +G EAL F M + G + ++
Sbjct: 363 MYAKCGSLASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPND 422
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++F G L+AC HAGL+ +G + FD+M ++ + P+IEH+ C+
Sbjct: 423 ITFVGLLSACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCM 464
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 106/185 (57%), Gaps = 3/185 (1%)
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM-QISGVE 159
+L+ MY++ GR+ A VFD + D W +++ G+ K EA+E F M + G E
Sbjct: 156 SLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFE 215
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD ++++SVL C + L +G W+ +V ++ N + + L+ +Y++ G + AR++
Sbjct: 216 PDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRI 275
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F M R +++WN++I G+A NG EA+ F+ M++ ++++ T L+AC+ G +
Sbjct: 276 FDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGAL 335
Query: 280 EDGLQ 284
+ G Q
Sbjct: 336 DLGKQ 340
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW 231
CAN+ L H V K + ++L+ +YSR G + FAR+VF + +R LVSW
Sbjct: 126 CANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSW 185
Query: 232 NSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALTACSHAGLIEDG 282
NS+I G+A G EA+E F M ++ F+ DE+S L AC G +E G
Sbjct: 186 NSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELG 237
>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 593
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 149/280 (53%), Gaps = 18/280 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSN---- 96
T+ W S I+ + G EA F RM G P+ IT ++ S CA D +
Sbjct: 166 TSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVR 225
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
NV+V TAL++MY K +D A FD M D W+ ++ G+ + E
Sbjct: 226 DLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLE 285
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+LE F M+ + P+ +T++ V++ CA + + + + Y Q + + L+D
Sbjct: 286 SLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALID 345
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y+R G + AR VF RM ++ +++WNS+I G A+NGF +A+ + M + + +E++
Sbjct: 346 MYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEIT 405
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L AC+HAGL++ G+ +F+ MK+ + VSPQ+EH CI
Sbjct: 406 FVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACI 445
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 100/191 (52%), Gaps = 3/191 (1%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ P + + L+ Y+K G +D A +FD M R W +++ + F EAL
Sbjct: 130 EMPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALAL 189
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F M G P+ +TI SV ++CA L G + + + D + NV V LM++Y +
Sbjct: 190 FDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQ-NVIVHTALMEMYVK 248
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
I+ AR+ F RM +R +V+W+++I G+A NG E+LE F M+ + +EV+ G
Sbjct: 249 CRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGV 308
Query: 270 LTACSHAGLIE 280
++AC+ G E
Sbjct: 309 ISACAQLGSDE 319
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
KD + + N L+ YS+ G ++ AR++F M +RT SWNS+I +A G EAL F+
Sbjct: 134 KDPIPI-NCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDR 192
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
M + + ++ T + C+ +G ++ G + D++ +
Sbjct: 193 MLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGE 230
>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 621
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 162/330 (49%), Gaps = 58/330 (17%)
Query: 34 QTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF 93
Q S+ V WTS IS + RSG EA F MR+ G S ++S CAD
Sbjct: 132 QRMESEGMEPNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADL 191
Query: 94 PS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRG---------- 126
+ V +AL+ +Y K G ++ A +F M+
Sbjct: 192 GAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALI 251
Query: 127 --------CD-----------------------FWTALLNGFVKRDYFEEALEYFRVMQI 155
CD W+A+++GF + +EALE FR MQ
Sbjct: 252 TSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQH 311
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
+ + + +TI +VL++CA + L +G +H +V + +N+ V N L+++Y++ GC++
Sbjct: 312 AKILANAVTISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKE 371
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
+F++ ++ L+SWNS+I G+ ++G ALE F+ M K FK D V+F L++CSH
Sbjct: 372 GHMIFEKTERKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSH 431
Query: 276 AGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+GL+ +G + FD M K YR+ PQ+EH+ C+
Sbjct: 432 SGLVHEGRRLFDQMLKKYRIEPQMEHYACM 461
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 60/291 (20%)
Query: 60 CILEAALEFT--RMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMV 100
C+L A+ RMR GT TF ++ CA S +++ V
Sbjct: 20 CMLVLAISVMPRRMRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHV 79
Query: 101 STALLDMYAKFGRMDLATVVFDVMRGCDF------------------------------- 129
L+ MYAK GRM A +FD M +
Sbjct: 80 GNELIGMYAKLGRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGM 139
Query: 130 ------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
WT+L++ + + + EEA+E F +M++ GVE + V+++CA++
Sbjct: 140 EPNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKI 199
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H Y K F++ V + L+ VY + G + A +F M ++L SWN++I A G
Sbjct: 200 IHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGL 259
Query: 244 VGEALEYFNLMQKG----VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
EALE F+ +++ + + VS++ + + G ++ L+ F M+
Sbjct: 260 CDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQ 310
>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
Length = 624
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 151/276 (54%), Gaps = 20/276 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V WTS I+ + ++ +EA M P+ TF +LL + +
Sbjct: 118 VSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHAL 177
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+V V +ALLDMYA+ G+MD+AT VFD + + W AL++GF ++ E A
Sbjct: 178 AVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESA 237
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F M +G E + T SV + A + L G W+H +V K K V NTL+D+
Sbjct: 238 LMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDM 297
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G + AR+VF R+ + LV+WNS++ FA G EA+ +F M+K ++++F
Sbjct: 298 YAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITF 357
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
LTACSH GL+++G +YF++MK+ Y + P+I+H+
Sbjct: 358 LCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHY 392
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 20/212 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN-------- 97
V W + IS R G A + F M G +H T+ ++ S A +
Sbjct: 219 VSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAH 278
Query: 98 ---------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
V LLDMYAK G M A VFD + D W ++L F + +EA
Sbjct: 279 VIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEA 338
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ +F M+ SGV + +T + +L C++ + G + + D + + T++ +
Sbjct: 339 VSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVAL 398
Query: 207 YSRFGCIEFARQ-VFQRMHKRTLVSWNSIIVG 237
R G + +A +F+ + T W +++
Sbjct: 399 LGRAGLLNYALVFIFKMPMEPTAAVWGALLAA 430
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S + CA + L +H ++ F + + N+L+ +Y + + AR VF +M ++
Sbjct: 56 SFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRK 115
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+VSW S+I G+A N EA+ M KG FK + +F L A
Sbjct: 116 DMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAA 162
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 154/309 (49%), Gaps = 51/309 (16%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA--DFPSNNVM------ 99
WT+ IS R+G EA F+ MR G V +++ CA + N M
Sbjct: 234 WTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAF 293
Query: 100 ---------VSTALLDMYAKF-------------------------------GRMDLATV 119
V AL+ MY+ F G + A
Sbjct: 294 RAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKE 353
Query: 120 VFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
+F VM D WT +++G V+ D EAL F MQ G++PD +T++SV++ C N+ +
Sbjct: 354 LFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSS 413
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
L G MH Y+ + + V + +L+D+Y + GC+E A +VF M +R WN++IVG
Sbjct: 414 LEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVG 473
Query: 238 FAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
A+NG V ++L+ F+ M+ T +E++FTG L+AC HAGL+E+G +F +M+ Y +
Sbjct: 474 LAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHII 533
Query: 297 PQIEHHGCI 305
P I H+GC+
Sbjct: 534 PNIRHYGCM 542
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 6/202 (2%)
Query: 91 ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
A P ++++ ++ + G +D A VFD + D WTA+++ F + F EAL
Sbjct: 193 ARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALA 252
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M+ G D ++ V+ CA + G H + + V N L+ +YS
Sbjct: 253 LFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYS 312
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
F + AR++F SWNS+I G+ NG V +A E F +M D VS+T
Sbjct: 313 SFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMP----DKDNVSWTT 368
Query: 269 ALTACSHAGLIEDGLQYFDIMK 290
++ C + L F+ M+
Sbjct: 369 MISGCVQNDQSSEALTIFNNMQ 390
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD T + CA R + G +H + + F N+ + N LM +YS GC+ AR+V
Sbjct: 101 PDCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKV 160
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDE-VSFTGALTACSHAG 277
F VSWN+I+ + V +A+ F M ++G VS G A
Sbjct: 161 FDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEAR 220
Query: 278 LIEDGLQYFDI 288
+ DG++ D+
Sbjct: 221 KVFDGVERKDV 231
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 151/313 (48%), Gaps = 53/313 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRM--RLYGTNPSHITFVTLLSGCADFP--------- 94
V W +S + R E+ F M + +P+ +T V +LS C+
Sbjct: 203 VTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIY 262
Query: 95 ---------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF---------------- 129
N+++ AL+DM+A G MD A VFD M+ D
Sbjct: 263 NKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRI 322
Query: 130 -----------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC 172
WTA+++G+++ + F+E L FR MQ+S V+PD T++S+L C
Sbjct: 323 DLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTAC 382
Query: 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
A++ L +G W Y+ K K++ + N L+D+Y + G +E A+++F M K+ +W
Sbjct: 383 AHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWT 442
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
++IVG A NG EAL F+ M + DE+++ G + AC+H GL+ G +F M
Sbjct: 443 AMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQ 502
Query: 293 YRVSPQIEHHGCI 305
+ + P + H+GC+
Sbjct: 503 HGIKPNLTHYGCM 515
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 125/289 (43%), Gaps = 54/289 (18%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD--------------- 92
W + I + R C + M ++ P TF LL G
Sbjct: 103 WNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAV 162
Query: 93 ---FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEAL 147
F +N+ V + +++ G ++ A +FD+ G + W +L+G+ + +EE+
Sbjct: 163 IHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESK 222
Query: 148 EYFRVMQ--ISGVEPDYLTIISVLNVCANVRTLGIGLWMH-RYVPKQDFKDNVRVCNTLM 204
F M+ V P+ +T++ +L+ C+ ++ L G ++ +Y+ + + N+ + N L+
Sbjct: 223 RLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALI 282
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA------------------------- 239
D+++ G ++ AR VF M R ++SW SI+ GFA
Sbjct: 283 DMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTA 342
Query: 240 -VNGFV-----GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
++G++ E L F MQ K DE + LTAC+H G +E G
Sbjct: 343 MIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELG 391
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 151/280 (53%), Gaps = 22/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V WT+ I+ G + L F +M G NP+ TF+++L C+
Sbjct: 258 VSWTALITGFVAEG--YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHA 315
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEE 145
N V TAL+DMYAK ++ A +F+ + R WT ++ G+ + E+
Sbjct: 316 QIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEK 375
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A++ F MQ GV+P+ T+ S L+ C+ + TL G +H K ++ V + L+D
Sbjct: 376 AVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVD 435
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ GC+E A VF + R VSWN+II G++ +G G+AL+ F M DEV+
Sbjct: 436 MYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVT 495
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L+ACSH GLIE+G ++F+ + KIY ++P IEH+ C+
Sbjct: 496 FIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACM 535
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 111/262 (42%), Gaps = 20/262 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----- 96
I QW +S + EA F MR + F +L+S A N
Sbjct: 52 IQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGES 111
Query: 97 ------------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTA--LLNGFVKRDY 142
++++S A + MY K ++ F M + + LL+GF +
Sbjct: 112 IHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTET 171
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
++ + + G EP+ T IS+L CA+ L G +H V K + + N+
Sbjct: 172 CDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNS 231
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L++VY++ G +A +VF + +R +VSW ++I GF G+ G L FN M F +
Sbjct: 232 LVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGY-GSGLRIFNQMLAEGFNPN 290
Query: 263 EVSFTGALTACSHAGLIEDGLQ 284
+F L +CS ++ G Q
Sbjct: 291 MYTFISILRSCSSLSDVDLGKQ 312
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V V+ L+ +Y G +DLA VFD M R W ++++ V+ ++ AL+ FR MQ
Sbjct: 185 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 244
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ---DFKDNVRVCNTLMDVYSRFG 211
S EPD T+ SVL+ CA + +L +G W H ++ ++ D +V V N+L+++Y + G
Sbjct: 245 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 303
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM--QKGVFKTDEVSFTGA 269
+ A QVFQ M KR L SWN++I+GFA +G EA+ +F+ M ++ + + V+F G
Sbjct: 304 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 363
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L AC+H G + G QYFD+M + Y + P +EH+GCI
Sbjct: 364 LIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCI 399
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 108/260 (41%), Gaps = 26/260 (10%)
Query: 29 PQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS 88
P I ++ S ST Q S++ C L+ FT Y P+
Sbjct: 31 PHIPPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPA--------- 81
Query: 89 GCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGF---VKRDYF 143
+ + +L + + F ++ A VFD + W L+ V R
Sbjct: 82 --------TLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRK-- 131
Query: 144 EEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
EEA +R M G PD T VL CA + G +H + K F +V V N
Sbjct: 132 EEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNG 191
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+ +Y GC++ AR+VF M +R+LVSWNS+I G AL+ F MQ+ F+ D
Sbjct: 192 LIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPD 250
Query: 263 EVSFTGALTACSHAGLIEDG 282
+ L+AC+ G + G
Sbjct: 251 GYTMQSVLSACAGLGSLSLG 270
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 149/274 (54%), Gaps = 20/274 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
WTS I+ + ++ EA M P+ TF +LL S
Sbjct: 133 WTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTV 192
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALE 148
++V V +ALLDMYA+ GRMD+A VFD + + W AL+ GF ++ E L
Sbjct: 193 KYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLL 252
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F MQ +G E + T SV + A + L G W+H ++ K + + V NT++D+Y+
Sbjct: 253 MFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYA 312
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G + AR+VF R+ K+ +V+WNS++ FA G EA+ +F M+K ++++F
Sbjct: 313 KSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLS 372
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
LTACSH GL+++G QYFD+MK+ Y + P+I+H+
Sbjct: 373 ILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHY 405
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 2/190 (1%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+ +V + +L+ +Y K G + A VFD M D WT+L+ G+ + D +EAL
Sbjct: 96 AGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPG 155
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M +P+ T S+L + GIG +H K D+ D+V V + L+D+Y+R G
Sbjct: 156 MLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGR 215
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ A VF ++ + VSWN++I GFA G L F MQ+ F+ +++ +A
Sbjct: 216 MDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSA 275
Query: 273 CSHAGLIEDG 282
+ G +E G
Sbjct: 276 IAGIGALEQG 285
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S++ CA R+L +H ++ F +V + N+L+ +Y + G + AR+VF M R
Sbjct: 69 SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ SW S+I G+A N EAL M +G FK + +F L A
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAA 175
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 20/210 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + I+ R G L F M+ G +H T+ ++ S A +
Sbjct: 232 VSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAH 291
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ V +LDMYAK G M A VFD + D W ++L F + EA
Sbjct: 292 MIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREA 351
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ +F M+ GV + +T +S+L C++ + G + + + + + T++D+
Sbjct: 352 VTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDL 411
Query: 207 YSRFGCIEFARQ-VFQRMHKRTLVSWNSII 235
R G + A +F+ K T W +++
Sbjct: 412 LGRAGLLNDALVFIFKMPMKPTAAVWGALL 441
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 124/215 (57%), Gaps = 3/215 (1%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFR 151
P+ +VM +L+ YA G + +F+ M R W AL+ G+ + F E L F+
Sbjct: 175 PNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFK 234
Query: 152 VMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M + G V P+ T+++VL+ CA + L +G W+H Y +K NV V N LMD+Y++
Sbjct: 235 RMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKC 294
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G +E A VF+ M + L+SWN+II G AV+G +AL F+ M+ D ++F G L
Sbjct: 295 GVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGIL 354
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
AC+H GL+EDG YF M Y + P+IEH+GCI
Sbjct: 355 CACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCI 389
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 83/198 (41%), Gaps = 21/198 (10%)
Query: 47 QWTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLLSGCADFPS---------- 95
W + I + R+GC E F RM + GT P+ T V +LS CA +
Sbjct: 212 SWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVY 271
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
NV V AL+DMYAK G ++ A VF M D W ++ G + +A
Sbjct: 272 AESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADA 331
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMD 205
L F M+I+G PD +T I +L C ++ + G + + ++D
Sbjct: 332 LNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVD 391
Query: 206 VYSRFGCIEFARQVFQRM 223
+ R G + A ++M
Sbjct: 392 LLGRAGLLAHAVDFIRKM 409
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 2/127 (1%)
Query: 114 MDLATVVFDVMR--GCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV 171
M+ A VFD + W A+ G+ + + ++ + FR M+ V P+ T +L
Sbjct: 1 MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60
Query: 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW 231
C + L G +H +V K F+ N V TL+D+Y+ G I A +VF M +R +++W
Sbjct: 61 CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120
Query: 232 NSIIVGF 238
++I G+
Sbjct: 121 TAMINGY 127
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 48/245 (19%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAK 110
F +M+ P+ TF +L C + N V+T L+DMYA
Sbjct: 39 FRQMKGLDVMPNCFTFPVILKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYAS 98
Query: 111 FGRMDLATVVFDVM--RGCDFWTALLNGFV-------KRDYFEEALEYFRVM---QISGV 158
G + A VF M R WTA++NG++ R F+ A E V+ ISG
Sbjct: 99 GGAIHAAYRVFGEMIERNVIAWTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISG- 157
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
Y+ V+ R L +P +D V NT+++ Y+ G + +
Sbjct: 158 ---YIEAKDVI----RAREL------FDKMPNKD----VMSWNTVLNGYASNGDVMACER 200
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVSFTGALTACSHAG 277
+F+ M +R + SWN++I G+ NG E L F ++ G ++ + L+AC+ G
Sbjct: 201 LFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLG 260
Query: 278 LIEDG 282
++ G
Sbjct: 261 ALDLG 265
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 156/285 (54%), Gaps = 25/285 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + I+ + +G EA F M P T V+++S CA S
Sbjct: 162 VSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSW 221
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+++ + AL+D+Y+K G ++ A +F+ + D W L+ G+ +
Sbjct: 222 VDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNL 281
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ--DFKDNVRVC 200
++EAL F+ M SG P+ +T++SVL CA++ + IG W+H Y+ K+ + +
Sbjct: 282 YKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLR 341
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+L+D+Y++ G IE A QVF M R+L SWN++I GFA++G A + F+ M+ +
Sbjct: 342 TSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVE 401
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+++F G L+ACSH+GL++ G Q F M + Y ++P++EH+GC+
Sbjct: 402 PDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCM 446
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 130/290 (44%), Gaps = 56/290 (19%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD---FPSNNVM----- 99
W + + H S + A + RM G P+ +F LL CA F +
Sbjct: 32 WNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVL 91
Query: 100 ---------VSTALLDMYAKFGRMDLATVVFD-----------------VMRGCDF---- 129
V T+L+ MYA+ G ++ A VFD RG DF
Sbjct: 92 KLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRG-DFRSAR 150
Query: 130 -------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR 176
W A++ G+V+ +EEALE F+ M + V PD T++SV++ CA
Sbjct: 151 KVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSG 210
Query: 177 TLGIGLWMHRYV----PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
++ +G +H +V F ++++ N L+D+YS+ G +E A +F+ + + +VSWN
Sbjct: 211 SIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWN 270
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
++I G+ EAL F M + ++V+ L AC+H G I+ G
Sbjct: 271 TLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIG 320
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 33/207 (15%)
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + A VF+ ++ + W +L G ALE + M G P+ + +
Sbjct: 11 FDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFL 70
Query: 169 LNVCA-----------NVRTLGIGLWMHRYVPK------------QDFKD--------NV 197
L CA + + L +G + RYV +D + +V
Sbjct: 71 LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
C L+ Y+ G AR+VF + +R +VSWN++I G+ NG EALE F M +
Sbjct: 131 VSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRT 190
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ DE + ++AC+ +G IE G Q
Sbjct: 191 NVRPDEGTLVSVVSACAQSGSIELGRQ 217
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 154/309 (49%), Gaps = 51/309 (16%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA--DFPSNNVM------ 99
WT+ IS R+G EA F+ MR G V +++ CA + N M
Sbjct: 234 WTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAF 293
Query: 100 ---------VSTALLDMYAKF-------------------------------GRMDLATV 119
V AL+ MY+ F G + A
Sbjct: 294 RAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKE 353
Query: 120 VFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
+F VM D WT +++G V+ D EAL F MQ G++PD +T++SV++ C N+ +
Sbjct: 354 LFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSS 413
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
L G MH Y+ + + V + +L+D+Y + GC+E A +VF M +R WN++IVG
Sbjct: 414 LEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVG 473
Query: 238 FAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
A+NG V ++L+ F+ M+ T +E++FTG L+AC HAGL+E+G +F +M+ Y +
Sbjct: 474 LAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHII 533
Query: 297 PQIEHHGCI 305
P I H+GC+
Sbjct: 534 PNIRHYGCM 542
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 6/202 (2%)
Query: 91 ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
A P ++++ ++ + G +D A VFDV+ D WTA+++ F + F EAL
Sbjct: 193 ARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALA 252
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M+ G D ++ V+ CA + G H + + V N L+ +YS
Sbjct: 253 LFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYS 312
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
F + AR++F SWNS+I G+ NG V +A E F +M D VS+T
Sbjct: 313 SFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMP----DKDNVSWTT 368
Query: 269 ALTACSHAGLIEDGLQYFDIMK 290
++ C + L F+ M+
Sbjct: 369 MISGCVQNDQSSEALTIFNNMQ 390
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD T + CA R + G +H + + F N+ + N LM +YS GC+ AR+V
Sbjct: 101 PDCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKV 160
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALTACSHAGL 278
F VSWN+I+ + V +A+ F M ++G + + ++ G+
Sbjct: 161 FDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGA-----AAVSSMVSLFGRRGM 215
Query: 279 IEDGLQYFDIMKK 291
+++ + FD++++
Sbjct: 216 VDEARKVFDVVER 228
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V V+ L+ +Y G +DLA VFD M R W ++++ V+ ++ AL+ FR MQ
Sbjct: 162 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 221
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ---DFKDNVRVCNTLMDVYSRFG 211
S EPD T+ SVL+ CA + +L +G W H ++ ++ D +V V N+L+++Y + G
Sbjct: 222 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 280
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM--QKGVFKTDEVSFTGA 269
+ A QVFQ M KR L SWN++I+GFA +G EA+ +F+ M ++ + + V+F G
Sbjct: 281 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 340
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L AC+H G + G QYFD+M + Y + P +EH+GCI
Sbjct: 341 LIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCI 376
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 87/185 (47%), Gaps = 9/185 (4%)
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGF---VKRDYFEEALEYFRVMQISG- 157
+L + + F ++ A VFD + W L+ V R EEA +R M G
Sbjct: 66 ILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRK--EEAFMLYRKMLERGE 123
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
PD T VL CA + G +H + K F +V V N L+ +Y GC++ AR
Sbjct: 124 SSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLAR 183
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+VF M +R+LVSWNS+I G AL+ F MQ+ F+ D + L+AC+ G
Sbjct: 184 KVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLG 242
Query: 278 LIEDG 282
+ G
Sbjct: 243 SLSLG 247
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 136/216 (62%), Gaps = 2/216 (0%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDV--MRGCDFWTALLNGFVKRDYFEEALEY 149
+ P + + T ++ YA G +D A +FD+ ++ W A+++G+V+ + F+E L
Sbjct: 165 EMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHM 224
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
FR+MQ++ VEPD I+++L+ CA++ L G+W+HRY+ + +RV L+D+Y++
Sbjct: 225 FRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAK 284
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G ++ A+ +F M +R V WN++I G A++G A++ F M+K K D ++F
Sbjct: 285 CGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAV 344
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACS++G++++G++ ++ M ++++ P+ EH+GC+
Sbjct: 345 LAACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCV 380
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 110/239 (46%), Gaps = 37/239 (15%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN-- 97
+T+ T W + IS + ++ C E F M+L P VT+LS CA + +
Sbjct: 197 ATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTG 256
Query: 98 ---------------VMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKR 140
+ VST L+DMYAK G +DLA +F+ M D W A+++G
Sbjct: 257 IWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMD 316
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL--GIGLW-----MHRYVPKQDF 193
E A++ F M+ +G++PD +T I+VL C+N + GI +W +H+ PK +
Sbjct: 317 GDGEGAIKLFMEMEKAGIKPDNITFIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEH 376
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----RTLVSWNSIIVGFAVNGFVGEA 247
V +D+ SR G E A V QR+ K V+W + + +G +A
Sbjct: 377 YGCV------IDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQA 429
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 32/188 (17%)
Query: 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186
C F T ++ + R F A+ F + +G+ PD T+ VL A + + +G +H
Sbjct: 71 CIFNT-MIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHA 129
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA------- 239
K N V N+L+ +Y F + ARQVF M + + VSW +I G+A
Sbjct: 130 CTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDT 189
Query: 240 -------------------VNGFV-----GEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
++G+V E L F LMQ + DE L+AC+H
Sbjct: 190 ARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAH 249
Query: 276 AGLIEDGL 283
G ++ G+
Sbjct: 250 MGALDTGI 257
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 147/280 (52%), Gaps = 17/280 (6%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP-------- 94
D V W S + R G EA F M TF ++L+ C
Sbjct: 329 DDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHG 388
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N +VS AL+DMYAK G MD A VF+ M D WT+L+ G+ + + EE
Sbjct: 389 LIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEE 448
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+L+ F M+++GV PD + S+L+ CA + L G +H K + + V N+L+
Sbjct: 449 SLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVA 508
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ GC++ A +F M + +++W +IIVG+A NG +L++++ M + D ++
Sbjct: 509 MYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFIT 568
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L ACSHAGL+++G +YF M K+Y + P EH+ C+
Sbjct: 569 FIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACM 608
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 118/243 (48%), Gaps = 27/243 (11%)
Query: 55 HCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNN 97
+C+ GC +EA F MRL G S T ++L C+ N
Sbjct: 137 YCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGN 196
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF-------WTALLNGFVKRDYFEEALEYF 150
V V T L+DMYAK + A +F +G +F WTA++ G+ + +A+E+F
Sbjct: 197 VFVVTGLVDMYAKCKCVSEAEFLF---KGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFF 253
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R M GVE + T ++L C++V G +H ++ K F NV V + L+D+Y++
Sbjct: 254 RYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKC 313
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G ++ A+ + + M +VSWNS++VGF +G EAL F M K D+ +F L
Sbjct: 314 GDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVL 373
Query: 271 TAC 273
C
Sbjct: 374 NCC 376
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 15/190 (7%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD-----FWTALLNGFVKRDYFEEA 146
D S N M+S+ Y GR+ A +FD GC W+++++G+ K EA
Sbjct: 95 DEYSWNTMISS-----YVNVGRLVEARELFD---GCSCKSSITWSSIISGYCKFGCKVEA 146
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ FR M++ G + T+ SVL VC+++ + G +H +V K F+ NV V L+D+
Sbjct: 147 FDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDM 206
Query: 207 YSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
Y++ C+ A +F+ + ++ V W +++ G+A NG +A+E+F M + ++
Sbjct: 207 YAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQY 266
Query: 265 SFTGALTACS 274
+F LTACS
Sbjct: 267 TFPTILTACS 276
>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 697
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 149/274 (54%), Gaps = 20/274 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
WTS I+ + ++ EA M P+ TF +LL S
Sbjct: 133 WTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTV 192
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALE 148
++V V +ALLDMYA+ GRMD+A VFD + + W AL+ GF ++ E L
Sbjct: 193 KYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLL 252
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F MQ +G E + T SV + A + L G W+H ++ K + + V NT++D+Y+
Sbjct: 253 MFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYA 312
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G + AR+VF R+ K+ +V+WNS++ FA G EA+ +F M+K ++++F
Sbjct: 313 KSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLS 372
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
LTACSH GL+++G QYFD+MK+ Y + P+I+H+
Sbjct: 373 ILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHY 405
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 2/190 (1%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+ +V + +L+ +Y K G + A VFD M D WT+L+ G+ + D +EAL
Sbjct: 96 AGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPG 155
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M +P+ T S+L + GIG +H K D+ D+V V + L+D+Y+R G
Sbjct: 156 MLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGR 215
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ A VF ++ + VSWN++I GFA G L F MQ+ F+ +++ +A
Sbjct: 216 MDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSA 275
Query: 273 CSHAGLIEDG 282
+ G +E G
Sbjct: 276 IAGIGALEQG 285
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S++ CA R+L +H ++ F +V + N+L+ +Y + G + AR+VF M R
Sbjct: 69 SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ SW S+I G+A N EAL M +G FK + +F L A
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAA 175
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 20/210 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + I+ R G L F M+ G +H T+ ++ S A +
Sbjct: 232 VSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAH 291
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ V +LDMYAK G M A VFD + D W ++L F + EA
Sbjct: 292 MIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREA 351
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ +F M+ GV + +T +S+L C++ + G + + + + + T++D+
Sbjct: 352 VTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDL 411
Query: 207 YSRFGCIEFARQ-VFQRMHKRTLVSWNSII 235
R G + A +F+ K T W +++
Sbjct: 412 LGRAGLLNDALVFIFKMPMKPTAAVWGALL 441
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 151/281 (53%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W S IS + + EA F M G P+ ++ V++L C +
Sbjct: 194 VSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEF 253
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+ N + +AL+ MY K G + A +FD M+ D W A++ G+ + EEA
Sbjct: 254 VVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEA 313
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
++ F+ M++S PD +T+I +L+ CA++ L +G + Y ++ F+D+V V L+D+
Sbjct: 314 IKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDM 373
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM--QKGVFKTDEV 264
Y++ G ++ A +VF M K+ VSWN++I A +G EAL F M + G +++
Sbjct: 374 YAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDI 433
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L+AC HAGL+++G + F +M + + P+IEH+ C+
Sbjct: 434 TFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCM 474
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 129/240 (53%), Gaps = 20/240 (8%)
Query: 65 ALEF-TRMRLYGTNPSHITFVTLLSGCADFPS--NNVM---------------VSTALLD 106
ALEF +RM+ G P+++T+ L C++ + N M VS +L+
Sbjct: 111 ALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLIT 170
Query: 107 MYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
MYA+ G+M A VFD + D W ++++G+ K + EA+ FR M +G +P+ ++
Sbjct: 171 MYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMS 230
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
++SVL C + L +G W+ +V + N + + L+ +Y + G + AR++F M
Sbjct: 231 LVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMK 290
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
K+ V+WN++I G+A NG EA++ F M+ D+++ G L+AC+ G ++ G Q
Sbjct: 291 KKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQ 350
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 125/215 (58%), Gaps = 3/215 (1%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFR 151
P N+M +L Y K G ++LA +F M D W+ ++ GF YFEEA +FR
Sbjct: 199 PVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFR 258
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
+Q G+ P+ ++ VL+ CA L G +H ++ K V V N L+D YS+ G
Sbjct: 259 ELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCG 318
Query: 212 CIEFARQVFQR-MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
+ A+ VF+R M++R +VSW S++ A++G EA+ F+ M++ + DE++F L
Sbjct: 319 NVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLL 378
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSHAGL+E G +YFD MK +Y + P IEH+GC+
Sbjct: 379 YACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCM 413
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 63/213 (29%)
Query: 133 LLNGFVKRDYFEEAL-EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
L+ G + D +++L ++ + + S PD + ++ AN+R++ +G+ +H
Sbjct: 76 LIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVH 135
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-------------------------- 225
++ V TL+ +Y G + FAR+VF M +
Sbjct: 136 GLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELF 195
Query: 226 -----RTLVSWNSIIVGFAVNG-------------------------------FVGEALE 249
R L+SWN ++ G+ G + EA
Sbjct: 196 DLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFS 255
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+F +Q+ + +E S TG L+AC+ AG +E G
Sbjct: 256 FFRELQRKGMRPNETSLTGVLSACAQAGALEFG 288
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 150/281 (53%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPS----- 95
T+ W S I+ + G EA F +M G +P+ IT T+ S CA D +
Sbjct: 174 TSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAK 233
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
NV+V TAL++MY K +D A FD M R W+ ++ G+ E
Sbjct: 234 AWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHE 293
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+LE F M+ + +P+ +T++ VL+ CA + + +G + Y+ Q + + L+D
Sbjct: 294 SLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALID 353
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + AR VF RM ++ +++WNS+I G A+NGF +A+ + M + +E++
Sbjct: 354 MYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEIT 413
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYR-VSPQIEHHGCI 305
F LTAC+HAGL++ G+ +F MKK + SPQ+EH CI
Sbjct: 414 FLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACI 454
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 34/222 (15%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM----------------RGCDF---------- 129
+V V TAL+D YAK G MD A + F+ M R D
Sbjct: 111 GDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLIIGYSRSGDVEEARRLFDSM 170
Query: 130 -------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182
W +++ + F+EAL F M G P+ +TI +V ++CA L G
Sbjct: 171 PRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGR 230
Query: 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG 242
+V ++D + NV V LM++Y + I+ AR+ F RM +R +V+W+++I G++ NG
Sbjct: 231 RAKAWVSEEDLQ-NVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNG 289
Query: 243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
E+LE F M+ K +EV+ G L+AC+ G E G Q
Sbjct: 290 RPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQ 331
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
VL CA G H + + +V V L+D Y++ G ++ A F+ M +
Sbjct: 84 VLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKD 143
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
+ N +I+G++ +G V EA F+ M + KT S+ + +H G ++ L FD
Sbjct: 144 PIPMNCLIIGYSRSGDVEEARRLFDSMPR---KTS-ASWNSMIACYAHGGEFQEALTLFD 199
Query: 288 IM 289
M
Sbjct: 200 QM 201
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 153/317 (48%), Gaps = 57/317 (17%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I+ ++G +EA F M P +T +++S CA +
Sbjct: 219 VSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGR 278
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM----------------------- 124
N++++S A +DMYAK R+ A +FD M
Sbjct: 279 VVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA 338
Query: 125 ----------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
R W AL+ G+ + EEAL F +++ V P + + ++L CA+
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACAD 398
Query: 175 VRTLGIGLWMHRYVPKQDFK------DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
+ L +G+ H +V K FK D++ V N+L+D+Y + GC+E VF++M +R
Sbjct: 399 LAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDC 458
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
VSWN++I+GFA NG+ EALE F M + K D ++ G L+AC HAG +E+G YF
Sbjct: 459 VSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSS 518
Query: 289 MKKIYRVSPQIEHHGCI 305
M + + V+P +H+ C+
Sbjct: 519 MTRDFGVAPLRDHYTCM 535
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 103/194 (53%), Gaps = 2/194 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYF 150
P N+ +++ K G +D A +F M D W ++++GF + D EEAL YF
Sbjct: 81 MPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYF 140
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+M G + + SVL+ C+ + + G+ +H + K F +V + + L+D+YS+
Sbjct: 141 AMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKC 200
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + A++VF M R +VSWNS+I F NG EAL+ F +M + + DEV+ +
Sbjct: 201 GNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVI 260
Query: 271 TACSHAGLIEDGLQ 284
+AC+ I+ G +
Sbjct: 261 SACASLSAIKVGQE 274
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 51/288 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN---------- 97
W S +S + EA F M G + +F ++LS C+ N
Sbjct: 120 WNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIA 179
Query: 98 -------VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
V + +AL+DMY+K G ++ A VFD M R W +L+ F + EAL+
Sbjct: 180 KSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALD 239
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDNVRVCNTLMDVY 207
F++M S VEPD +T+ SV++ CA++ + +G +H V K D ++++ + N +D+Y
Sbjct: 240 VFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMY 299
Query: 208 SRFGCIEFARQVFQ-------------------------------RMHKRTLVSWNSIIV 236
++ I+ AR +F +M +R +VSWN++I
Sbjct: 300 AKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIA 359
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
G+ NG EAL F L+++ SF L AC+ + G+Q
Sbjct: 360 GYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQ 407
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 33/226 (14%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + I+ + ++G EA F ++ P+H +F +L CAD
Sbjct: 352 VSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVH 411
Query: 95 ------------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKR 140
+++ V +L+DMY K G ++ +VF M R C W A++ GF +
Sbjct: 412 VLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQN 471
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW----MHRYVPKQDFKDN 196
Y EALE FR M SG +PD++T+I VL+ C + + G M R +D+
Sbjct: 472 GYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDH 531
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVN 241
++D+ R G +E A+ + + M + V W S++ V+
Sbjct: 532 Y---TCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVH 574
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 32/156 (20%)
Query: 168 VLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
+L+ C + I + ++H V K F + + + N L+D YS+ G +E RQVF +M +R
Sbjct: 25 LLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQR 84
Query: 227 TLVSWNSIIVGFAVNGFVG-------------------------------EALEYFNLMQ 255
+ +WNS++ G GF+ EAL YF +M
Sbjct: 85 NIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMH 144
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
K F +E SF L+ACS + G+Q ++ K
Sbjct: 145 KEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAK 180
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 150/286 (52%), Gaps = 19/286 (6%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---- 94
K ++ V WT+ I+ + G A F RMR +P+ TF ++SGCA+
Sbjct: 277 KMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEW 336
Query: 95 -------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
+ ++ V +++ MYAK G++ ++V+F M D W+ ++ G+ +
Sbjct: 337 GEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQ 396
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
+ EA E M++ G +P + SVL+ C N+ L G +H YV + V
Sbjct: 397 GGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMV 456
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
+ L+++Y + G IE A ++F +VSW ++I G+A +G+ E ++ F + +
Sbjct: 457 LSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGL 516
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D V+F G L+ACSHAGL++ G +YF+ M K Y++SP EH+GC+
Sbjct: 517 RPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCM 562
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 135/300 (45%), Gaps = 29/300 (9%)
Query: 10 LRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQ-----WTSSISRHCRSGCILEA 64
+ Q LP + + L K + N++ D Q WT+ IS + + EA
Sbjct: 44 ISQTDLPESNKQLKELVKTGHL----GNARRMFDKMSQKDEISWTTLISGYVNANDSSEA 99
Query: 65 ALEFTRMRLYG---TNP-------------SHITFVTLLSGCADFPS--NNVMVSTALLD 106
L F MR+ +P S + + LL G A N+V V +ALLD
Sbjct: 100 LLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLD 159
Query: 107 MYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
MY K G++ VF M R WTA++ G V+ Y +EAL YF M S VE D T
Sbjct: 160 MYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYT 219
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
L CA+ L G +H K+ F + V NTL +Y++ G +E+ +F++M
Sbjct: 220 FAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMS 279
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
R +VSW +II G A++ F M++ +E +F ++ C++ IE G Q
Sbjct: 280 MRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQ 339
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 144/281 (51%), Gaps = 20/281 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
T V WTS I+ + R G A F M+ G P ++L+ CA
Sbjct: 418 TVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVH 477
Query: 92 DFPSNNVM-----VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
D+ N + VS AL DMYAK G M A VF M+ D W ++ G+ K
Sbjct: 478 DYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPN 537
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL F MQ +PD T+ +L CA++ L G +H Y + + ++ V N ++
Sbjct: 538 EALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVV 596
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y + G + AR +F + + LVSW +I G+ ++G+ EA+ FN M+ + DEV
Sbjct: 597 DMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEV 656
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SF L ACSH+GL+++G + F+IMKK ++ P +EH+ C+
Sbjct: 657 SFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACM 697
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 130/265 (49%), Gaps = 22/265 (8%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---------------- 91
W IS + SG E+ F +M G P+ TF ++L A
Sbjct: 219 WNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLIC 278
Query: 92 --DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEAL 147
F S N +V++ L+ Y ++ A +FD + D W ++++G+VK + +
Sbjct: 279 KLGFNSYNTVVNS-LISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGI 337
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDV 206
E F M + GV+ D T+++V CAN+ TL +G +H Y K D VR NTL+D+
Sbjct: 338 EIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDM 397
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
YS+ G + A +VF+RM ++T+VSW S+I G+ G A++ F+ M+ D +
Sbjct: 398 YSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAV 457
Query: 267 TGALTACSHAGLIEDGLQYFDIMKK 291
T L AC+ G ++ G D +++
Sbjct: 458 TSILNACAINGNLKSGKIVHDYIRE 482
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 21/261 (8%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD----- 92
+KS +D + + I C G L+ A+E +N + ++L CA+
Sbjct: 110 TKSYMDVELDSSRKIVEFCEVG-DLKNAMELL-CSSQNSNFDLGAYCSILQLCAERKSIR 167
Query: 93 --------FPSNNVMV----STALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFV 138
S+ VM+ L+ MY K G + +VFD + W +++ +
Sbjct: 168 DGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYS 227
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ E++ F+ M G++P+ T S+L A V + G +H + K F
Sbjct: 228 GSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNT 287
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V N+L+ Y + A+++F + R ++SWNS+I G+ NG +E F M
Sbjct: 288 VVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFG 347
Query: 259 FKTDEVSFTGALTACSHAGLI 279
D + AC++ G +
Sbjct: 348 VDIDLATMVNVFVACANIGTL 368
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 60/126 (47%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S+L +CA +++ G + + + + L+ +Y + G ++ R VF ++ +
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES 214
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
+ WN +I ++ +G GE++ F M + K + +F+ L + +E+G Q
Sbjct: 215 KIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVH 274
Query: 287 DIMKKI 292
++ K+
Sbjct: 275 GLICKL 280
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V V+ L+ +Y G +DLA VFD M R W ++++ V+ ++ AL+ FR MQ
Sbjct: 242 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 301
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ---DFKDNVRVCNTLMDVYSRFG 211
S EPD T+ SVL+ CA + +L +G W H ++ ++ D +V V N+L+++Y + G
Sbjct: 302 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 360
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM--QKGVFKTDEVSFTGA 269
+ A QVFQ M KR L SWN++I+GFA +G EA+ +F+ M ++ + + V+F G
Sbjct: 361 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 420
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L AC+H G + G QYFD+M + Y + P +EH+GCI
Sbjct: 421 LIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCI 456
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 87/185 (47%), Gaps = 9/185 (4%)
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGF---VKRDYFEEALEYFRVMQISG- 157
+L + + F ++ A VFD + W L+ V R EEA +R M G
Sbjct: 146 ILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRK--EEAFMLYRKMLERGE 203
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
PD T VL CA + G +H + K F +V V N L+ +Y GC++ AR
Sbjct: 204 SSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLAR 263
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+VF M +R+LVSWNS+I G AL+ F MQ+ F+ D + L+AC+ G
Sbjct: 264 KVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLG 322
Query: 278 LIEDG 282
+ G
Sbjct: 323 SLSLG 327
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 123/199 (61%), Gaps = 2/199 (1%)
Query: 109 AKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
AK G +D + +FD M R W ++++G+V+ F +ALE F+ MQ+ +EP T++
Sbjct: 199 AKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMV 258
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S+LN CA + + G W+H Y+ K+ F+ N V ++D+YS+ G I+ A QVFQ +R
Sbjct: 259 SLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRR 318
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
L WNS+I+G A+NG EAL+ F+++Q + D+VSF LTAC H G+++ YF
Sbjct: 319 GLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTACDHTGMVDKAKDYF 378
Query: 287 DIMKKIYRVSPQIEHHGCI 305
+M+ Y++ P I+H C+
Sbjct: 379 LLMRDKYKIKPGIKHFSCM 397
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 27/221 (12%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------- 91
K ++ V W S IS + R+G +A F +M++ PS T V+LL+ CA
Sbjct: 213 KMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQ 272
Query: 92 -----DFPSN-----NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK 139
D+ N +V TA++DMY+K G +D A VF RG W +++ G
Sbjct: 273 GEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAM 332
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG----LWMHRYVPKQDFKD 195
EAL+ F V+Q S + PD ++ I+VL C + + L M K K
Sbjct: 333 NGQENEALQLFSVLQSSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRD---KYKIKP 389
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
++ + ++DV R G +E A ++ + MH + W S++
Sbjct: 390 GIKHFSCMVDVLGRAGLLEEAEELIRSMHVDPDAIIWGSLL 430
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 92/221 (41%), Gaps = 35/221 (15%)
Query: 112 GRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE-YFRVMQISGVEPDYLTIISV 168
G ++ A +VF ++ + W ++ GF + + ++ Y ++ S V+P LT SV
Sbjct: 69 GDINYAYLVFVQIQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSV 128
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
A + G +H + K +++ + NT++ +Y G AR+VF R +
Sbjct: 129 FKAFAQLDLASEGAQLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDI 188
Query: 229 VSWNSIIVGFAVNGFVGE-------------------------------ALEYFNLMQKG 257
V+WN++I+G A G V E ALE F MQ
Sbjct: 189 VAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVE 248
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIM-KKIYRVSP 297
+ E + L AC+ G I G D M KK + ++P
Sbjct: 249 RIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNP 289
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 149/286 (52%), Gaps = 19/286 (6%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---- 94
K ++ V WT+ I+ + G A F RMR +P+ TF ++SGCA+
Sbjct: 277 KMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEW 336
Query: 95 -------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
+ ++ V +++ MYAK G++ ++V+F M D W+ ++ G+ +
Sbjct: 337 GEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQ 396
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
+ EA E M++ G +P + SVL+ C N+ L G +H YV + V
Sbjct: 397 GGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMV 456
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
+ L+++Y + G IE A ++F +VSW ++I G+A +G+ E ++ F + +
Sbjct: 457 LSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGL 516
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D V+F G L+ACSHAGL++ G YF+ M K Y++SP EH+GC+
Sbjct: 517 RPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCM 562
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 135/300 (45%), Gaps = 29/300 (9%)
Query: 10 LRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQ-----WTSSISRHCRSGCILEA 64
+ Q LP + + L K + N++ D Q WT+ IS + + EA
Sbjct: 44 ISQTDLPESNKQLKELVKTGHL----GNARRMFDKMSQKDEISWTTLISGYVNANDSSEA 99
Query: 65 ALEFTRMRLYG---TNP-------------SHITFVTLLSGCADFPS--NNVMVSTALLD 106
L F MR+ +P S + + LL G A N+V V +ALLD
Sbjct: 100 LLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLD 159
Query: 107 MYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
MY K G++ VF M R WTA++ G V+ Y +EAL YF M S VE D T
Sbjct: 160 MYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYT 219
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
L CA+ L G +H K+ F + V NTL +Y++ G +E+ +F++M
Sbjct: 220 FAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMS 279
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
R +VSW +II G A++ F M++ +E +F ++ C++ IE G Q
Sbjct: 280 MRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQ 339
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 153/281 (54%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
T V W S + + ++G +A F +M G +P+ +T + L CAD
Sbjct: 313 TVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVH 372
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+++ V +L+ MY+K R+D+A+ +F+ + G W A++ G+ +
Sbjct: 373 KFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVS 432
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL F M+ G++PD T++SV+ A + W+H + + N+ V L+
Sbjct: 433 EALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALV 492
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+YS+ G I AR++F + R +++WN++I G+ +G AL+ F+ M+KG + +++
Sbjct: 493 DMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDI 552
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++ ++ACSH+GL+++GL++F MK+ Y + P ++H+G +
Sbjct: 553 TYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAM 593
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 131/248 (52%), Gaps = 19/248 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + I+ ++G +A RM+ G P IT VT+L AD
Sbjct: 214 VSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGY 273
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+ V +STAL DMY+K G ++ A ++FD M + W ++++G+V+ E+A
Sbjct: 274 AIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKA 333
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ F M G++P +TI+ L+ CA++ L G ++H++V + + ++ V N+L+ +
Sbjct: 334 IAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISM 393
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
YS+ ++ A +F ++ RT VSWN++I+G+A NG V EAL F+ M+ K D +
Sbjct: 394 YSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTM 453
Query: 267 TGALTACS 274
+ A +
Sbjct: 454 VSVIPALA 461
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 117/241 (48%), Gaps = 20/241 (8%)
Query: 62 LEAALEFT-RMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTA 103
LE AL F RMR P F LL C D + NV T
Sbjct: 128 LETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTG 187
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
+++MYAK ++D A +FD M D W ++ GF + + ++ALE MQ G PD
Sbjct: 188 VVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPD 247
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
+T+++VL A+V L +G +H Y + F V + L D+YS+ G +E AR +F
Sbjct: 248 SITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFD 307
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
M ++T+VSWNS++ G+ NG +A+ F M + V+ AL AC+ G +E
Sbjct: 308 GMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLER 367
Query: 282 G 282
G
Sbjct: 368 G 368
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 2/189 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
N + T L+ +++K+G ++ A VF+ + + + +L G+ K E AL + M
Sbjct: 79 NEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRM 138
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ V+P +L VC + L G +H + F NV ++++Y++ I
Sbjct: 139 RYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQI 198
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ A ++F RM +R LVSWN+II GF+ NGF +ALE MQ + D ++ L A
Sbjct: 199 DDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAA 258
Query: 274 SHAGLIEDG 282
+ GL+ G
Sbjct: 259 ADVGLLMVG 267
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 153/281 (54%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
T V W S + + ++G +A F +M G +P+ +T + L CAD
Sbjct: 313 TVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVH 372
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+++ V +L+ MY+K R+D+A+ +F+ + G W A++ G+ +
Sbjct: 373 KFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVS 432
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL F M+ G++PD T++SV+ A + W+H + + N+ V L+
Sbjct: 433 EALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALV 492
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+YS+ G I AR++F + R +++WN++I G+ +G AL+ F+ M+KG + +++
Sbjct: 493 DMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDI 552
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++ ++ACSH+GL+++GL++F MK+ Y + P ++H+G +
Sbjct: 553 TYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAM 593
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 131/248 (52%), Gaps = 19/248 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + I+ ++G +A RM+ G P IT VT+L AD
Sbjct: 214 VSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGY 273
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+ V +STAL DMY+K G ++ A ++FD M + W ++++G+V+ E+A
Sbjct: 274 AIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKA 333
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ F M G++P +TI+ L+ CA++ L G ++H++V + + ++ V N+L+ +
Sbjct: 334 IAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISM 393
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
YS+ ++ A +F ++ RT VSWN++I+G+A NG V EAL F+ M+ K D +
Sbjct: 394 YSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTM 453
Query: 267 TGALTACS 274
+ A +
Sbjct: 454 VSVIPALA 461
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 117/241 (48%), Gaps = 20/241 (8%)
Query: 62 LEAALEFT-RMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTA 103
LE AL F RMR P F LL C D + NV T
Sbjct: 128 LETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTG 187
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
+++MYAK ++D A +FD M D W ++ GF + + ++ALE MQ G PD
Sbjct: 188 VVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPD 247
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
+T+++VL A+V L +G +H Y + F V + L D+YS+ G +E AR +F
Sbjct: 248 SITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFD 307
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
M ++T+VSWNS++ G+ NG +A+ F M + V+ AL AC+ G +E
Sbjct: 308 GMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLER 367
Query: 282 G 282
G
Sbjct: 368 G 368
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 2/189 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
N + T L+ +++K+G ++ A VF+ + + + +L G+ K E AL + M
Sbjct: 79 NEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRM 138
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ V+P +L VC + L G +H + F NV ++++Y++ I
Sbjct: 139 RYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQI 198
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ A ++F RM +R LVSWN+II GF+ NGF +ALE MQ + D ++ L A
Sbjct: 199 DDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAA 258
Query: 274 SHAGLIEDG 282
+ GL+ G
Sbjct: 259 ADVGLLMVG 267
>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
Length = 785
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 130/212 (61%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+ ++V +L+DMYAK G+ + A ++F + R WTA+++ +V++ ++EE L+ F M
Sbjct: 344 SEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKM 403
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ + V D T S+L A++ +L +G +H ++ K F NV + L+DVY++ G I
Sbjct: 404 RQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSI 463
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ A Q FQ M R +VSWN++I +A NG L+ F M + D VSF G L+AC
Sbjct: 464 KDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSAC 523
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH+GL+E+GL +F+ M +IY++ P+ EH+ +
Sbjct: 524 SHSGLVEEGLWHFNSMTQIYKLDPRREHYASV 555
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 109/260 (41%), Gaps = 54/260 (20%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN------ 97
T V WT I + + EA F +M+ GT P ++TFVTLLSGC N
Sbjct: 108 TAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQ 167
Query: 98 -----------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEA 146
++V L+D Y K R+DLA +F M
Sbjct: 168 TQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMP--------------------- 206
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANV--RTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E D T +VL CAN+ + +G +H +V K +F NV V N L+
Sbjct: 207 ------------EIDSFTFAAVL--CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALL 252
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D YS+ + AR++F M ++ VS+N II G+A +G A + F +Q F +
Sbjct: 253 DFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQF 312
Query: 265 SFTGALTACSHAGLIEDGLQ 284
F L+ S+ E G Q
Sbjct: 313 PFATMLSIASNTLDWEMGRQ 332
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 2/190 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQ 154
NV VS ALLD Y+K + A +FD M D + +++G+ + A + FR +Q
Sbjct: 244 NVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQ 303
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ + ++L++ +N +G +H + V N+L+D+Y++ G E
Sbjct: 304 FTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFE 363
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +F + R+ V W ++I + GF E L+ FN M++ D+ +F L A +
Sbjct: 364 EAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASA 423
Query: 275 HAGLIEDGLQ 284
+ G Q
Sbjct: 424 SIASLSLGKQ 433
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 23/214 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V WT+ IS + + G E F +MR TF +LL A S
Sbjct: 376 SAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLH 435
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+NV +ALLD+YAK G + A F M R W A+++ + + E
Sbjct: 436 SFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAE 495
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN--T 202
L+ F+ M +SG++PD ++ + VL+ C++ + GLW H Q +K + R + +
Sbjct: 496 ATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLW-HFNSMTQIYKLDPRREHYAS 554
Query: 203 LMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
++D+ R G A ++ M + W+S++
Sbjct: 555 VVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVL 588
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 4/133 (3%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFR 151
P N + + ++ Y K G + A +FD M R WT L+ G+ + + F+EA E F
Sbjct: 74 PHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFV 133
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
MQ G EPDY+T +++L+ C N +G + + + K + + V NTL+D Y +
Sbjct: 134 QMQRCGTEPDYVTFVTLLSGC-NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKS 192
Query: 211 GCIEFARQVFQRM 223
++ A Q+F+ M
Sbjct: 193 NRLDLACQLFKEM 205
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
N N ++ Y + G + AR++F M +RT V+W +I G++ EA E F MQ
Sbjct: 77 NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 136
Query: 256 KGVFKTDEVSFTGALTACS 274
+ + D V+F L+ C+
Sbjct: 137 RCGTEPDYVTFVTLLSGCN 155
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
+ N RV N L + G + ARQ+F++M + VS N +I G+ +G +GEA + F+
Sbjct: 49 RSNFRVGNFLKN-----GELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFD- 102
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
G+ + V++T + S ++ + F M++
Sbjct: 103 ---GMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQR 137
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 150/281 (53%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPS----- 95
T+ W S I+ + G EA F +M G +P+ IT T+ S CA D +
Sbjct: 174 TSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAK 233
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
NV+V TAL++MY K +D A FD M R W+ ++ G+ E
Sbjct: 234 AWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHE 293
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+LE F M+ + +P+ +T++ VL+ CA + + +G + Y+ Q + + L+D
Sbjct: 294 SLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALID 353
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + AR VF RM ++ +++WNS+I G A+NGF +A+ + M + +E++
Sbjct: 354 MYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEIT 413
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYR-VSPQIEHHGCI 305
F LTAC+HAGL++ G+ +F MKK + SPQ+EH CI
Sbjct: 414 FLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACI 454
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 34/222 (15%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM----------------RGCDF---------- 129
+V V TAL+D YAK G MD A + F+ M R D
Sbjct: 111 GDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLITGYSRSGDVEEARRLFDSM 170
Query: 130 -------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182
W +++ + F+EAL F M G P+ +TI +V ++CA L G
Sbjct: 171 PRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGR 230
Query: 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG 242
+V ++D + NV V LM++Y + I+ AR+ F RM +R +V+W+++I G++ NG
Sbjct: 231 RAKAWVSEEDLQ-NVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNG 289
Query: 243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
E+LE F M+ K +EV+ G L+AC+ G E G Q
Sbjct: 290 RPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQ 331
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
VL CA G H + + +V V L+D Y++ G ++ A F+ M +
Sbjct: 84 VLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKD 143
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
+ N +I G++ +G V EA F+ M + KT S+ + +H G ++ L FD
Sbjct: 144 PIPMNCLITGYSRSGDVEEARRLFDSMPR---KTS-ASWNSMIACYAHGGEFQEALTLFD 199
Query: 288 IM 289
M
Sbjct: 200 QM 201
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 31/291 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
V W++ I+ + + G EA F +M L G+ P+ +T V+LLSGCA
Sbjct: 352 VTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCH 411
Query: 92 ----------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGF 137
+ P +++MV AL+DMY+K A +FD++ R WT L+ G
Sbjct: 412 AIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGN 471
Query: 138 VKRDYFEEALEYFRVMQISG--VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195
+ EALE F M V P+ TI L CA + L G +H YV + F+
Sbjct: 472 AQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFES 531
Query: 196 NVR-VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+ V N L+D+YS+ G ++ AR VF MH+R VSW S++ G+ ++G EAL+ F M
Sbjct: 532 AMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEM 591
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
QK D V+F L ACSH+G+++ G+ YF+ M K + V P EH+ C+
Sbjct: 592 QKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACM 642
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 144/315 (45%), Gaps = 40/315 (12%)
Query: 15 LPHQQNRNQNLKKRPQISIQ---TNNSKS-----------TIDTTVQWTSSISRHCRSGC 60
L HQQ Q L P I T NS + + T W I R G
Sbjct: 66 LTHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGF 125
Query: 61 ILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-----------------NVMVSTA 103
+ + + RM+ G P H TF +L C + PS NV V
Sbjct: 126 LEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNG 185
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDF-----WTALLNGFVKRDYFEEALEYF-RVMQISG 157
L+ MY + G + A VFD MR W +++ +++ A++ F R+ + G
Sbjct: 186 LVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLG 245
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
+ PD +++++VL CA+V G +H Y + ++V V N ++D+Y++ G +E A
Sbjct: 246 IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEAN 305
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+VF+RM + +VSWN+++ G++ G +AL F +++ + + V+++ + + G
Sbjct: 306 KVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRG 365
Query: 278 LIEDGLQYFDIMKKI 292
L G + D+ +++
Sbjct: 366 L---GFEALDVFRQM 377
>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like, partial [Vitis vinifera]
Length = 825
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 130/212 (61%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+ ++V +L+DMYAK G+ + A ++F + R WTA+++ +V++ ++EE L+ F M
Sbjct: 384 SEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKM 443
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ + V D T S+L A++ +L +G +H ++ K F NV + L+DVY++ G I
Sbjct: 444 RQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSI 503
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ A Q FQ M R +VSWN++I +A NG L+ F M + D VSF G L+AC
Sbjct: 504 KDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSAC 563
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH+GL+E+GL +F+ M +IY++ P+ EH+ +
Sbjct: 564 SHSGLVEEGLWHFNSMTQIYKLDPRREHYASV 595
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 127/262 (48%), Gaps = 23/262 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN------ 97
T V WT I + + EA F +M+ GT P ++TFVTLLSGC N
Sbjct: 113 TAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQ 172
Query: 98 -----------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++V L+D Y K R+DLA +F M D + A++ G+ K E
Sbjct: 173 TQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDE 232
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANV--RTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+A+ F MQ SG++P T +VL CAN+ + +G +H +V K +F NV V N
Sbjct: 233 KAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNA 290
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D YS+ + AR++F M ++ VS+N II G+A +G A + F +Q F
Sbjct: 291 LLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRK 350
Query: 263 EVSFTGALTACSHAGLIEDGLQ 284
+ F L+ S+ E G Q
Sbjct: 351 QFPFATMLSIASNTLDWEMGRQ 372
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 6/188 (3%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFR 151
P N + + ++ Y K G + A +FD M R WT L+ G+ + + F+EA E F
Sbjct: 79 PHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFV 138
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
MQ G EPDY+T +++L+ C N +G + + + K + + V NTL+D Y +
Sbjct: 139 QMQRCGTEPDYVTFVTLLSGC-NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKS 197
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
++ A Q+F+ M + VS+N++I G++ +G +A+ F MQ K E +F L
Sbjct: 198 NRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL 257
Query: 271 TACSHAGL 278
C++ GL
Sbjct: 258 --CANIGL 263
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 114/261 (43%), Gaps = 23/261 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-------- 96
+V + + I+ + + G +A F M+ G P+ TF +L CA+ +
Sbjct: 215 SVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQI 272
Query: 97 -----------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYF 143
NV VS ALLD Y+K + A +FD M D + +++G+
Sbjct: 273 HSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKH 332
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
+ A + FR +Q + + ++L++ +N +G +H + V N+L
Sbjct: 333 KYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSL 392
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G E A +F + R+ V W ++I + GF E L+ FN M++ D+
Sbjct: 393 VDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQ 452
Query: 264 VSFTGALTACSHAGLIEDGLQ 284
+F L A + + G Q
Sbjct: 453 ATFASLLRASASIASLSLGKQ 473
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 23/214 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V WT+ IS + + G E F +MR TF +LL A S
Sbjct: 416 SAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLH 475
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+NV +ALLD+YAK G + A F M R W A+++ + + E
Sbjct: 476 SFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAE 535
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN--T 202
L+ F+ M +SG++PD ++ + VL+ C++ + GLW H Q +K + R + +
Sbjct: 536 ATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLW-HFNSMTQIYKLDPRREHYAS 594
Query: 203 LMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
++D+ R G A ++ M + W+S++
Sbjct: 595 VVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVL 628
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
+ N RV N L + G + ARQ+F++M + VS N +I G+ +G +GEA + F+
Sbjct: 54 RSNFRVGNFLKN-----GELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFD- 107
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
G+ + V++T + S ++ + F M++
Sbjct: 108 ---GMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQR 142
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 152/277 (54%), Gaps = 20/277 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------ 92
V W S I R G + A F M + +++ T+L G A
Sbjct: 188 VVTWNSMIGGLVRCGELQGACKLFDEM----PDRDMVSWNTMLDGYAKAGEMDTAFELFE 243
Query: 93 -FPSNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEY 149
P N++ + ++ Y+K G MD+A ++FD ++ WT ++ G+ ++ EA E
Sbjct: 244 RMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATEL 303
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
+ M+ +G+ PD ++S+L CA LG+G +H + + F+ +V N +D+Y++
Sbjct: 304 YGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAK 363
Query: 210 FGCIEFARQVFQ-RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
GC++ A VF M K+ +VSWNS+I GFA++G +ALE F+ M + F+ D +F G
Sbjct: 364 CGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVG 423
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L AC+HAGL+ +G +YF M+K+Y + PQ+EH+GC+
Sbjct: 424 LLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCM 460
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F MQ +G+ PD T +L C+ +L + +H +V K F ++ V N+L+D YSR
Sbjct: 108 FFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSR 167
Query: 210 FG--CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
G ++ A +F M +R +V+WNS+I G G + A + F+ M D VS+
Sbjct: 168 CGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMP----DRDMVSWN 223
Query: 268 GALTACSHAGLIEDGLQYFDIM 289
L + AG ++ + F+ M
Sbjct: 224 TMLDGYAKAGEMDTAFELFERM 245
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 150/284 (52%), Gaps = 20/284 (7%)
Query: 42 IDTTVQWTSSISRHCRSG-CILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------ 94
+ + WT+ I+ + +SG C EA F M P+H TF ++L CA+
Sbjct: 211 VHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGE 270
Query: 95 -----------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRD 141
++ V +L+ MY++ G M+ A FDV+ + + ++N + K
Sbjct: 271 QVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSL 330
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
EEA E F ++ +G + T S+L+ +++ +G G +H + K FK N+ +CN
Sbjct: 331 NSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICN 390
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+ +YSR G IE A QVF M ++SW S+I GFA +GF ALE F+ M +
Sbjct: 391 ALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSP 450
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+EV++ L+ACSH GLI +GL++F MK + + P++EH+ C+
Sbjct: 451 NEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACV 494
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 25/272 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V W++ IS + + EA F M G P+ F + C++
Sbjct: 8 VSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGF 67
Query: 93 -----FPSNNVMVSTALLDMYAKF-GRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+ ++V V AL+DM+ K G ++ A VFD M R WT ++ F + +
Sbjct: 68 LLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSR 127
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+A++ F M +SG PD T+ V++ CA + L +G H V K +V V +L+
Sbjct: 128 DAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLV 187
Query: 205 DVYSRF---GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG-EALEYFNLMQKGVFK 260
D+Y++ G ++ AR+VF RM ++SW +II G+ +G EA+E F M +G K
Sbjct: 188 DMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVK 247
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
+ +F+ L AC++ I G Q + ++ K+
Sbjct: 248 PNHFTFSSVLKACANLSDIWLGEQVYALVVKM 279
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
+KR LVSW+++I +A N EA+ F M + F +E FTG ACS+ I G
Sbjct: 3 NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62
Query: 284 QYFDIMKK 291
F + K
Sbjct: 63 IIFGFLLK 70
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 135/218 (61%), Gaps = 6/218 (2%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P +++ STA++ YAK G ++ A +FD M R W +++G+ + + +AL F
Sbjct: 187 MPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLF 246
Query: 151 RVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
+ + G +PD +T+++ L+ C+ + L G W+H +V + NV+VC L+D+YS+
Sbjct: 247 QKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSK 306
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ--KGVFKTDEVSFT 267
G +E A VF ++ +V+WN++I G+A++G+ +AL FN MQ G+ TD ++F
Sbjct: 307 CGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTD-ITFI 365
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L AC+HAGL+ +G++ F+ M + Y + P+IEH+GC+
Sbjct: 366 GTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCL 403
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 38/209 (18%)
Query: 108 YAKFGRMDLATVVFDVMRGCDFW--TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
YA G++ + +F D + TA +N ++A + + S + P+ T
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
S+L C+ G +H +V K + V L+DVY++ G + A++VF RM +
Sbjct: 134 SSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPE 189
Query: 226 RTL-------------------------------VSWNSIIVGFAVNGFVGEALEYF-NL 253
R+L VSWN +I G+A +GF +AL F L
Sbjct: 190 RSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKL 249
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ +G K DE++ AL+ACS G +E G
Sbjct: 250 LAEGKPKPDEITVVAALSACSQIGALETG 278
>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 134/215 (62%), Gaps = 5/215 (2%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
S+N++++T L+D+Y+ + + A VFD + D W L++ + +AL F +
Sbjct: 201 SDNLLLTT-LMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDI 259
Query: 153 MQIS--GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
MQ + G EPD +T + +L CAN+ L G +H Y+ + + + +CN+L+ +YSR
Sbjct: 260 MQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLCNSLITMYSRC 319
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G +E A +F+RM +R +VSW+++I GFA++G+ EA+E F MQ+ D+ + TG L
Sbjct: 320 GRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVL 379
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ACSH GL++DGL +FD M K++ + P I H+GC+
Sbjct: 380 SACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCM 414
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 124/294 (42%), Gaps = 30/294 (10%)
Query: 13 PFLPHQQNRNQNLKKRPQISIQTNN-SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRM 71
PFL +++ + + ++ QT+ KS ++ Q S I + +L+ R
Sbjct: 35 PFLDSEESPSTASENHRRLQHQTHPLPKSRDESENQLISLIKSCSKKTHLLQIHAHIIRT 94
Query: 72 RLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT 131
L +H + LS A PS ++ S+ + M + ++VM
Sbjct: 95 SLI---QNHFISLQFLSRAALSPSRDMGYSSQVFSQI-----MKPSGSQYNVM------- 139
Query: 132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
+ + E+ +R M+ GV P+ L+ V+ C + +L GL +H + +
Sbjct: 140 --IRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARILRD 197
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
+ + + TLMD+YS E A +VF + + VSWN +I N +AL F
Sbjct: 198 GHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMF 257
Query: 252 NLMQKGV--FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303
++MQ F+ D+V+ L AC++ G +E G RV IE HG
Sbjct: 258 DIMQSTADGFEPDDVTCLLLLQACANLGALEFG----------ERVHNYIEEHG 301
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 149/284 (52%), Gaps = 20/284 (7%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----- 95
++ T V WTS I+ + R G EA F M G +P T T+L CA S
Sbjct: 60 SVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGK 119
Query: 96 ------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
+N+ V AL+DMYAK G M+ A VF M D W ++ G+ K
Sbjct: 120 DVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNS 179
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
EAL F M + ++PD T+ +L CA++ +L G +H ++ + F + +V N
Sbjct: 180 LPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVAN 238
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+D+Y + G AR +F + + L++W +I G+ ++GF A+ FN M++ +
Sbjct: 239 ALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEP 298
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
DEVSF L ACSH+GL+++G ++F++M+ V P++EH+ CI
Sbjct: 299 DEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACI 342
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 102/183 (55%), Gaps = 3/183 (1%)
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
LLDMYAK G +D A +VFD+M R WT+L+ + + +EA+ F M GV PD
Sbjct: 39 LLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPD 98
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
TI +VL+ CA +L G +H Y+ + D + N+ VCN LMD+Y++ G +E A VF
Sbjct: 99 IFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFL 158
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
M + ++SWN++I G++ N EAL F M + K D + L AC+ ++
Sbjct: 159 EMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEM-KPDGTTLACILPACASLASLDR 217
Query: 282 GLQ 284
G +
Sbjct: 218 GKE 220
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%)
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
++S+L CAN + +G +H K CNTL+D+Y++ G ++ A VF M
Sbjct: 1 MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
RT+V+W S+I +A G EA+ F+ M + D + T L AC+ G +E+G
Sbjct: 61 VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENG 118
>gi|357154306|ref|XP_003576739.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
mitochondrial-like [Brachypodium distachyon]
Length = 620
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 146/295 (49%), Gaps = 31/295 (10%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
I V W + + + RSG + L F +MR+ G T L+ CA+ P
Sbjct: 182 IGNNVAWNTLLMGYSRSGNAKQCLLVFNKMRMSGLCCDDATLCILVDACAELPYPPTGFA 241
Query: 95 ---------------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WT 131
S ++ +L+D Y + G ++ A V+F + + WT
Sbjct: 242 IHKIVVQSGWNAIPEIFESMESRTIVSWNSLIDAYMRLGHIEQAAVLFRIAPATNAISWT 301
Query: 132 ALLNGFVKRDYFEEALEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
A++ GF + +EAL F +++ + PD T +VL+ CA +L G +H +
Sbjct: 302 AMIGGFARNGSADEALALFVKMLTQDDIHPDSFTFGAVLHACATASSLASGRMIHGCAFR 361
Query: 191 QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 250
+ + V N+LMD+Y++ G +E A VF + K+ LVSWN+++ GFA+NG+ EALE
Sbjct: 362 TGYASYLYVANSLMDMYAKCGDVEGATNVFHAVLKKDLVSWNTMLFGFAINGWAKEALEV 421
Query: 251 FNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ M DEV+F G LTACSH+GL+E G +F+ M ++ + P EH C+
Sbjct: 422 YRRMLSHDACPDEVTFAGLLTACSHSGLLEQGRTFFESMVSVHGLKPTPEHLSCV 476
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 85/199 (42%), Gaps = 21/199 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLY-GTNPSHITFVTLLSGCADFPS-------- 95
+ WT+ I R+G EA F +M +P TF +L CA S
Sbjct: 297 AISWTAMIGGFARNGSADEALALFVKMLTQDDIHPDSFTFGAVLHACATASSLASGRMIH 356
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ + V+ +L+DMYAK G ++ AT VF + D W +L GF + +
Sbjct: 357 GCAFRTGYASYLYVANSLMDMYAKCGDVEGATNVFHAVLKKDLVSWNTMLFGFAINGWAK 416
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-LWMHRYVPKQDFKDNVRVCNTL 203
EALE +R M PD +T +L C++ L G + V K + +
Sbjct: 417 EALEVYRRMLSHDACPDEVTFAGLLTACSHSGLLEQGRTFFESMVSVHGLKPTPEHLSCV 476
Query: 204 MDVYSRFGCIEFARQVFQR 222
+D+Y+R G I A ++ R
Sbjct: 477 LDMYARSGNIAAAIEMLDR 495
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 26/197 (13%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEY 149
+ P N + +LL Y G+M +A +FD M + W LL G+ + ++ L
Sbjct: 148 EMPERNALSWCSLLHAYVASGQMKVAQELFDEMPIGNNVAWNTLLMGYSRSGNAKQCLLV 207
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F M++SG+ D T+ +++ CA + G +H+ V V S
Sbjct: 208 FNKMRMSGLCCDDATLCILVDACAELPYPPTGFAIHKIV-----------------VQSG 250
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
+ I ++F+ M RT+VSWNS+I + G + +A F + T+ +S+T
Sbjct: 251 WNAIP---EIFESMESRTIVSWNSLIDAYMRLGHIEQAAVLFRIAP----ATNAISWTAM 303
Query: 270 LTACSHAGLIEDGLQYF 286
+ + G ++ L F
Sbjct: 304 IGGFARNGSADEALALF 320
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 120 VFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
VFD M R W A+L + + AL F + PD ++ + L+ A++R+
Sbjct: 48 VFDAMPCRDAVAWNAMLTAYARAGQPRAALGLF----VRAHAPDAFSLTAALSAAADLRS 103
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
G +H + + + + V N L+ +Y+R + A + F+ M +R +SW S++
Sbjct: 104 PDAGAQLHARLLRLGLRAPLPVGNALVAMYARCARADDAARAFREMPERNALSWCSLLHA 163
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
+ +G + A E F+ M G + V++ L S +G + L F+ M+
Sbjct: 164 YVASGQMKVAQELFDEMPIG----NNVAWNTLLMGYSRSGNAKQCLLVFNKMR 212
>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 144/270 (53%), Gaps = 19/270 (7%)
Query: 55 HCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF-----------------PSNN 97
+ ++G + EA L + M P + F T L CAD +
Sbjct: 5 YSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGPD 64
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQI 155
+V+ LL +Y + + VFD M R W +L++GFVK D EAL+ FR MQ
Sbjct: 65 QVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQR 124
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
G+ ++T+ ++L +CA V L G +H + K + +V V N+L+D+Y + G +++
Sbjct: 125 EGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDY 184
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
R++F M + L SWN+++ G+A+NG++ A++ FN M + D+V+F L+ CSH
Sbjct: 185 GRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSH 244
Query: 276 AGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
AGL EDG + F M+ + VSP +EH+ C+
Sbjct: 245 AGLTEDGQKLFHRMEMDFGVSPSLEHYACL 274
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 1/160 (0%)
Query: 136 GFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195
G+ K + EAL + M + +EP + L CA++R L +G +H V K
Sbjct: 4 GYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGP 63
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
+ V N L+ +Y++ C +VF +M +R + SWNS+I GF +GEAL+ F MQ
Sbjct: 64 DQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQ 123
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQ-YFDIMKKIYR 294
+ V+ T L C+ + G + + I+K R
Sbjct: 124 REGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARR 163
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 21/210 (10%)
Query: 47 QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------- 95
W S IS + + EA F RM+ G S +T T+L CA +
Sbjct: 98 SWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTILPICARVTALLSGKEIHAQI 157
Query: 96 ------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEAL 147
+V+V +L+DMY K G +D +FD MR D W +L G+ Y A+
Sbjct: 158 VKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAM 217
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-HRYVPKQDFKDNVRVCNTLMDV 206
+ F M G+ PD +T I++L+ C++ G + HR ++ L+D+
Sbjct: 218 DLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDM 277
Query: 207 YSRFGCIEFARQVFQRMHKRTLVS-WNSII 235
R G I+ A V + M +T S W S++
Sbjct: 278 LGRAGRIDAALVVVKNMPMKTSGSIWGSLL 307
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 21/110 (19%)
Query: 47 QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA--------------- 91
W + ++ + +G + A F M G P +TF+ LLSGC+
Sbjct: 199 SWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRM 258
Query: 92 --DFPSNNVMVSTA-LLDMYAKFGRMDLATVVFDVM---RGCDFWTALLN 135
DF + + A L+DM + GR+D A VV M W +LLN
Sbjct: 259 EMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLN 308
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 132/216 (61%), Gaps = 7/216 (3%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
D + NVM++ Y K G A +FD M R WT ++ G+ + E+A+E
Sbjct: 143 DVVAWNVMIAG-----YVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEV 197
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
FR MQ+ G+E D + ++SVL C ++ + +G W+HR+V ++ + + N+++D+Y +
Sbjct: 198 FRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIPLMNSIIDMYMK 257
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
GCIE A +VF+ M ++++V+W ++I GFA++G +A+E F M++ + V+F
Sbjct: 258 CGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFCRMERENMAPNAVTFLAI 317
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH GL + G YF+IM YR+ P++EH+GC+
Sbjct: 318 LSACSHVGLTDLGRWYFNIMVSQYRIKPRVEHYGCM 353
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 98/222 (44%), Gaps = 21/222 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V WT+ I + + +A F RM++ G + +++L+ C D +
Sbjct: 175 VVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHR 234
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+ + +++DMY K G ++ A VF+ M + WT L+ GF +
Sbjct: 235 FVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQ 294
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLM 204
A+E F M+ + P+ +T +++L+ C++V +G W + Q K V ++
Sbjct: 295 AVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRVEHYGCMV 354
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVG 245
D+ R GC++ A+ + + M K W +++ +G G
Sbjct: 355 DLLGRAGCLKEAQDLVKNMPLKANAAIWGALLAAARTHGDAG 396
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 128/215 (59%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P+ +V++ TA++D Y K G ++ A ++F+ M R W+A++ + + F+E L F
Sbjct: 175 IPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLF 234
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R MQ +G P+ ++SVL CA++ L GLW+H Y + +F N + L+D+YS+
Sbjct: 235 RRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKC 294
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
GC+E A FQ + + +WN++I G A+NG ++LE FN M + E +F L
Sbjct: 295 GCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVL 354
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
TAC+HA L+++GL+ F+ M Y V PQ+EH+ C+
Sbjct: 355 TACTHARLVKEGLKLFEQMSSNYGVEPQLEHYACL 389
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 22/199 (11%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------- 91
+ W++ ++ + R G E F RM+ GT P+ V++L+ CA
Sbjct: 211 AISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHS 270
Query: 92 -----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFE 144
+F SN ++ +TAL+DMY+K G ++ A F + D W A+++G
Sbjct: 271 YAKQCNFDSNPIL-ATALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAW 329
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTL 203
++LE F M +G +P T ++VL C + R + GL + + + + L
Sbjct: 330 KSLELFNKMISNGTQPTETTFVAVLTACTHARLVKEGLKLFEQMSSNYGVEPQLEHYACL 389
Query: 204 MDVYSRFGCIEFARQVFQR 222
+D+ +R G + A + +
Sbjct: 390 VDLMARAGMLAEAEKFIEE 408
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 39/196 (19%)
Query: 124 MRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLG---- 179
+R + +++ G+V A+ + M G+ + T ++ C TLG
Sbjct: 74 LRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACT---TLGSSSK 130
Query: 180 -IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF 238
IG +H +V F ++ V + L++ YS + AR +F R+ R +V W ++I G+
Sbjct: 131 LIGCLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGY 190
Query: 239 AVNGFV-------------------------------GEALEYFNLMQKGVFKTDEVSFT 267
G V E L F MQ+ +E
Sbjct: 191 GKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLV 250
Query: 268 GALTACSHAGLIEDGL 283
LTAC+H G + GL
Sbjct: 251 SVLTACAHLGALAQGL 266
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 9/222 (4%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P +++ TA+L YAK G + A V+F+ M D W +++G+ + EAL +F
Sbjct: 178 MPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFF 237
Query: 151 R-------VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
R V P+ +T+++VL+ C V L G W+H YV K NVRV L
Sbjct: 238 RKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTAL 297
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y + G +E AR+VF M + +V+WNS+I+G+ ++GF EAL+ F+ M K +
Sbjct: 298 VDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSD 357
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++F LTAC+HAGL+ G + FD MK Y + P++EH+GC+
Sbjct: 358 ITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCM 399
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 26/166 (15%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTR-------MRLYGTNPSHITFVTLLSGCA--- 91
+ V W I + + GC EA + F + P+ IT V +LS C
Sbjct: 211 MKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVG 270
Query: 92 ---------DFPSN-----NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLN 135
+ N NV V TAL+DMY K G ++ A VFDVM G D W +++
Sbjct: 271 ALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIM 330
Query: 136 GFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG 181
G+ + +EAL+ F M GV+P +T ++VL CA+ + G
Sbjct: 331 GYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKG 376
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 10/181 (5%)
Query: 108 YAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
YA G + + +F + WT ++N D F AL Y+ M ++P+ T+
Sbjct: 65 YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTL 124
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
S+L C TL +H + K ++ V L+D Y+R G + A+++F M +
Sbjct: 125 SSLLKAC----TLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPE 180
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
R+LVS+ +++ +A +G + EA F +G+ D V + + + G + L +
Sbjct: 181 RSLVSYTAMLTCYAKHGMLPEARVLF----EGMGMKDVVCWNVMIDGYAQHGCPNEALVF 236
Query: 286 F 286
F
Sbjct: 237 F 237
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 133/213 (62%), Gaps = 2/213 (0%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
+ +V+ T+++ Y + G + LA FD M R WT +++G+++ F E+LE FR
Sbjct: 299 ARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFRE 358
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
MQ +G+ PD T++SVL CA++ +L IG W+ Y+ K K++V V N L+D+Y + GC
Sbjct: 359 MQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGC 418
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
E A++VF M +R +W +++VG A NG EA++ F MQ + D++++ G L+A
Sbjct: 419 SEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSA 478
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
C+H+G+++ ++F M+ +R+ P + H+GC+
Sbjct: 479 CNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCM 511
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 128/290 (44%), Gaps = 55/290 (18%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG---------CADFP-- 94
V W + I + C E + M G P TF LL+G C
Sbjct: 100 VVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHC 159
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYF 143
+N+ V AL+ MY+ G MD+A VFD R C W +++G+ + +
Sbjct: 160 HVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFD--RRCKEDVFSWNLMISGYNRMKEY 217
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EE++E M+ + V P +T++ VL+ C+ V+ + +H YV + + ++R+ N L
Sbjct: 218 EESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENAL 277
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA------------------------ 239
++ Y+ G ++ A ++F+ M R ++SW SI+ G+
Sbjct: 278 VNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWT 337
Query: 240 --VNGFV-----GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
++G++ E+LE F MQ DE + LTAC+H G +E G
Sbjct: 338 IMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG 387
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 34/217 (15%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT I + R+GC E+ F M+ G P T V++L+ CA S
Sbjct: 334 ISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTY 393
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
N+V+V AL+DMY K G + A VF M D WTA++ G +EA
Sbjct: 394 IDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEA 453
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL--- 203
++ F MQ ++PD +T + VL+ C + G+ ++ K + + R+ +L
Sbjct: 454 IKVFFQMQDMSIQPDDITYLGVLSACNHS---GMVDQARKFFAK--MRSDHRIEPSLVHY 508
Query: 204 ---MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+D+ R G ++ A ++ ++M ++ NSI+ G
Sbjct: 509 GCMVDMLGRAGLVKEAYEILRKMP----MNPNSIVWG 541
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 134/218 (61%), Gaps = 5/218 (2%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
+ P +V+ TA+L YAK G +D A +FD M DF W A+++G+ + EAL
Sbjct: 190 EMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRL 249
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP-KQDFKDNVRVCNTLMDVYS 208
FR M SGV+PD + II L+ A + T G W+H YV + + N RV L+D+Y
Sbjct: 250 FRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYC 309
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVSFT 267
+ G +E A VF + + +V WN++I G+A++G +ALE F+ L +G++ TD ++F
Sbjct: 310 KCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTD-ITFI 368
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSH+GL+++G Q+F M++ Y + P+IEH+GC+
Sbjct: 369 GLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCM 406
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 93/257 (36%), Gaps = 50/257 (19%)
Query: 86 LLSGCADFPSNNVMVSTA--------------LLDMYAKFGRMDLATVVFDVMRGCD--F 129
LL+GCA + + A L YA R+DL + + F
Sbjct: 41 LLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVF 100
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
+T+ ++ R AL M G+ P T+ S L C L +G +H Y
Sbjct: 101 YTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHAYAF 157
Query: 190 KQDFKDNVRVCNTLMDVYSR-------------------------------FGCIEFARQ 218
K + V L+ +Y+R G ++ AR+
Sbjct: 158 KLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARE 217
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
+F M + + WN++I G+ +G EAL F M + DEV+ AL+A + G
Sbjct: 218 LFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGT 277
Query: 279 IEDGLQYFDIMKKIYRV 295
E G +K RV
Sbjct: 278 AESGRWLHSYVKNSRRV 294
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 134/218 (61%), Gaps = 5/218 (2%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
+ P +V+ TA+L YAK G +D A +FD M DF W A+++G+ + EAL
Sbjct: 189 EMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRL 248
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP-KQDFKDNVRVCNTLMDVYS 208
FR M SGV+PD + II L+ A + T G W+H YV + + N RV L+D+Y
Sbjct: 249 FRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYC 308
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVSFT 267
+ G +E A VF + + +V WN++I G+A++G +ALE F+ L +G++ TD ++F
Sbjct: 309 KCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTD-ITFI 367
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSH+GL+++G Q+F M++ Y + P+IEH+GC+
Sbjct: 368 GLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCM 405
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 93/257 (36%), Gaps = 50/257 (19%)
Query: 86 LLSGCADFPSNNVMVSTA--------------LLDMYAKFGRMDLATVVFDVMRGCD--F 129
LL+GCA + + A L YA R+DL + + F
Sbjct: 40 LLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVF 99
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
+T+ ++ R AL M G+ P T+ S L C L +G +H Y
Sbjct: 100 YTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHAYAF 156
Query: 190 KQDFKDNVRVCNTLMDVYSR-------------------------------FGCIEFARQ 218
K + V L+ +Y+R G ++ AR+
Sbjct: 157 KLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARE 216
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
+F M + + WN++I G+ +G EAL F M + DEV+ AL+A + G
Sbjct: 217 LFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGT 276
Query: 279 IEDGLQYFDIMKKIYRV 295
E G +K RV
Sbjct: 277 AESGRWLHSYVKNSRRV 293
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 133/213 (62%), Gaps = 2/213 (0%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
+ +V+ T+++ Y + G + LA FD M R WT +++G+++ F E+LE FR
Sbjct: 299 ARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFRE 358
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
MQ +G+ PD T++SVL CA++ +L IG W+ Y+ K K++V V N L+D+Y + GC
Sbjct: 359 MQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGC 418
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
E A++VF M +R +W +++VG A NG EA++ F MQ + D++++ G L+A
Sbjct: 419 SEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSA 478
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
C+H+G+++ ++F M+ +R+ P + H+GC+
Sbjct: 479 CNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCM 511
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 128/290 (44%), Gaps = 55/290 (18%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG---------CAD---- 92
V W + I + C E + M G P TF LL+G C
Sbjct: 100 VVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHC 159
Query: 93 -----FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYF 143
+N+ V AL+ MY+ G MD+A VFD R C W +++G+ + +
Sbjct: 160 HVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFD--RRCKEDVFSWNLMISGYNRMKEY 217
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EE++E M+ + V P +T++ VL+ C+ V+ + +H YV + + ++R+ N L
Sbjct: 218 EESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENAL 277
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA------------------------ 239
++ Y+ G ++ A ++F+ M R ++SW SI+ G+
Sbjct: 278 VNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWT 337
Query: 240 --VNGFV-----GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
++G++ E+LE F MQ DE + LTAC+H G +E G
Sbjct: 338 IMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG 387
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 34/217 (15%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT I + R+GC E+ F M+ G P T V++L+ CA S
Sbjct: 334 ISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTY 393
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
N+V+V AL+DMY K G + A VF M D WTA++ G +EA
Sbjct: 394 IDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEA 453
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL--- 203
++ F MQ ++PD +T + VL+ C + G+ ++ K + + R+ +L
Sbjct: 454 IKVFFQMQDMSIQPDDITYLGVLSACNHS---GMVDQARKFFAK--MRSDHRIEPSLVHY 508
Query: 204 ---MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+D+ R G ++ A ++ ++M ++ NSI+ G
Sbjct: 509 GCMVDMLGRAGLVKEAYEILRKMP----MNPNSIVWG 541
>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 526
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 130/214 (60%), Gaps = 5/214 (2%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYFEEALEYFRV 152
N V A++ Y K G + A +FD M D WTA+++G+ + EA++ FR
Sbjct: 175 NGCVLNAMIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAMISGYTQAHNPNEAIKLFRR 234
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
MQ+ V+PD + I++VL+ CA++ L +G W+H Y+ K V + N+L+D+Y++ G
Sbjct: 235 MQLENVKPDEIAILAVLSACADLGALHLGEWIHNYIEKHKLSKIVPLYNSLIDMYAKSGN 294
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGALT 271
I A ++F+ M +T+++W ++I G A++G EAL F+ M+K K +EV+F L+
Sbjct: 295 IRKALELFENMKHKTIITWTTMIAGLALHGLGKEALRVFSCMEKEDRVKPNEVTFIAILS 354
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSH GL+E G YF M+ Y + P+IEH+GC+
Sbjct: 355 ACSHVGLVELGRDYFTSMRSRYGIEPKIEHYGCM 388
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 113/256 (44%), Gaps = 32/256 (12%)
Query: 34 QTNNSKSTIDTTVQ-------WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL 86
+N++ D+ ++ WT+ IS + ++ EA F RM+L P I + +
Sbjct: 191 DVSNARKLFDSMLERDKDVFSWTAMISGYTQAHNPNEAIKLFRRMQLENVKPDEIAILAV 250
Query: 87 LSGCADFP-----------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF 129
LS CAD S V + +L+DMYAK G + A +F+ M+
Sbjct: 251 LSACADLGALHLGEWIHNYIEKHKLSKIVPLYNSLIDMYAKSGNIRKALELFENMKHKTI 310
Query: 130 --WTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGL-WMH 185
WT ++ G +EAL F M+ V+P+ +T I++L+ C++V + +G +
Sbjct: 311 ITWTTMIAGLALHGLGKEALRVFSCMEKEDRVKPNEVTFIAILSACSHVGLVELGRDYFT 370
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNG-- 242
+ + + ++D+ R G ++ A+++ RM + W S++ G
Sbjct: 371 SMRSRYGIEPKIEHYGCMIDLLGRAGHLQEAKEMVLRMPFEANAAIWGSLLAASTRCGDA 430
Query: 243 -FVGEALEYFNLMQKG 257
EAL + +++ G
Sbjct: 431 ELAEEALRHLTVLEPG 446
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 31/168 (18%)
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ FR ++ G+ D ++ VL + G+G +H NV VC++L+
Sbjct: 96 AVSIFRSVRRLGLSFDSYSLPYVLKSVVCLNDFGLGKQIHCVGVVTGLDKNVSVCSSLIQ 155
Query: 206 VYS-----------------------------RFGCIEFARQVFQRMHKR--TLVSWNSI 234
+YS + G + AR++F M +R + SW ++
Sbjct: 156 MYSCYDVCSARKLFDEFGGNGCVLNAMIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAM 215
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
I G+ EA++ F MQ K DE++ L+AC+ G + G
Sbjct: 216 ISGYTQAHNPNEAIKLFRRMQLENVKPDEIAILAVLSACADLGALHLG 263
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 154/281 (54%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WT+ IS + + G +A F +M GT P+ TF T+L+ C
Sbjct: 125 VSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSH 184
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+V V ++LLDMYAK G++ A +F + D TA+++G+ + EEA
Sbjct: 185 IIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEA 244
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE FR +Q G++ +Y+T SVL + + L G +H ++ + + V + N+L+D+
Sbjct: 245 LELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDM 304
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVS 265
YS+ G + +AR++F +H+RT++SWN+++VG++ +G E LE FNLM + K D V+
Sbjct: 305 YSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVT 364
Query: 266 FTGALTACSHAGLIEDGLQ-YFDIMKKIYRVSPQIEHHGCI 305
L+ CSH GL + G+ ++D+ V P +H+GC+
Sbjct: 365 VLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCV 405
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 131/216 (60%), Gaps = 7/216 (3%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
D S N M+S Y K +D A +FD M D W+++++G+ + D F+E L
Sbjct: 441 DLISWNSMISG-----YLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLAL 495
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F+ MQ+SG +PD T++SV++ CA + L G W+H Y+ + NV + TL+D+Y +
Sbjct: 496 FQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMK 555
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
GC+E A +VF M ++ + +WN++I+G A+NG V +L+ F+ M+K +E++F G
Sbjct: 556 CGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGV 615
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L AC H GL+++G +F M +++ P ++H+GC+
Sbjct: 616 LGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCM 651
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 117/279 (41%), Gaps = 56/279 (20%)
Query: 37 NSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN 96
N S +D+ V W S ++ + G + EA + +M P
Sbjct: 272 NESSVLDS-VSWNSILAGYIEIGNVEEAKHIYHQM----------------------PER 308
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+++ S +++ ++ G + A +FD M D W+AL+ F + + +EEA+ F M
Sbjct: 309 SIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMH 368
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
GV D + +S L+ CAN+ + +G +H K + + + N L+ +YS+ G I
Sbjct: 369 KIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIM 428
Query: 215 FARQVFQRMHKRTLVSWNS-------------------------------IIVGFAVNGF 243
AR++F + L+SWNS +I G+A N
Sbjct: 429 VARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDL 488
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
E L F MQ FK DE + ++AC+ +E G
Sbjct: 489 FDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG 527
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 27/215 (12%)
Query: 35 TNNSKSTIDT-----TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG 89
+N+K+ D+ V W+S IS + ++ E F M++ G P T V+++S
Sbjct: 458 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 517
Query: 90 CADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFW 130
CA + NV++ T L+DMY K G ++ A VF M +G W
Sbjct: 518 CARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTW 577
Query: 131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
AL+ G E +L+ F M+ V P+ +T + VL C ++ + G H Y
Sbjct: 578 NALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQ-HHFYSMI 636
Query: 191 QDFK--DNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
D K NV+ ++D+ R G ++ A ++ RM
Sbjct: 637 HDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRM 671
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 6/145 (4%)
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A ++ M + + D T ++ C+ R+ +H +V K F +V V NTL++
Sbjct: 197 AFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN 256
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEV 264
+S + A +VF VSWNSI+ G+ G V EA ++ M ++ + ++ +
Sbjct: 257 CFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSM 316
Query: 265 SFTGALTACSHAGLIEDGLQYFDIM 289
+ GL+ + + FD M
Sbjct: 317 -----IVLFGMRGLVVEACKLFDEM 336
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 144/270 (53%), Gaps = 19/270 (7%)
Query: 55 HCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNN 97
+ R+ L A FT++ G P TF +LL CA S N
Sbjct: 96 YARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSEN 155
Query: 98 VMVSTALLDMYAKFGRMDLATVVFD-VMRGCDF-WTALLNGFVKRDYFEEALEYFRVMQI 155
V V L++MY MD A VFD + C + A++ G+ + EAL FR +Q
Sbjct: 156 VYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQA 215
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
++P +T++SVL+ CA + L +G WMH YV K F V+V L+D+Y++ G ++
Sbjct: 216 RNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDD 275
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
A VF+ M R +W+++I+ +A++G +A+ F M+K + DE++F G L ACSH
Sbjct: 276 AVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSH 335
Query: 276 AGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
GL+E+G +YF M+ Y V P I+H+GC+
Sbjct: 336 TGLVEEGFEYFYGMRDKYGVIPGIKHYGCM 365
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 2/180 (1%)
Query: 114 MDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV 171
M A +FD + D + + G+ + D A F + SG+ PD T S+L
Sbjct: 71 MQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKA 130
Query: 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW 231
CA+ + L G +H K +NV VC TL+++Y+ ++ AR+VF ++ + +V++
Sbjct: 131 CASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTY 190
Query: 232 NSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
N++I G+A EAL F +Q K +V+ L++C+ G ++ G + +KK
Sbjct: 191 NAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKK 250
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 145/257 (56%), Gaps = 19/257 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSN-----------------NVMVSTALLDMYAK 110
++RM L +PS+ TF +++ CAD + +V V AL+ +Y K
Sbjct: 99 YSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGK 158
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G + A VFD +R W ++++G+ + + +EA+ F M+ +GVEPD T +SV
Sbjct: 159 CGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSV 218
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ CA++ +G W+H Y+ NV + +L+++Y R G + AR+VF M +R +
Sbjct: 219 LSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNV 278
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
V+W ++I G+ NG+ +A+E F+ M++ + ++F L+AC+HAGL+ +G + F
Sbjct: 279 VAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFAS 338
Query: 289 MKKIYRVSPQIEHHGCI 305
+++ Y + P +EH+ C+
Sbjct: 339 IREEYHLVPGVEHNVCL 355
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 95/184 (51%), Gaps = 3/184 (1%)
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFE-EALEYFRVMQISGV 158
T LL++ G + +F + D +T+L+ K F +L ++ M +S V
Sbjct: 48 TKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNV 107
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
P T SV+ CA++ L G +H +V F +V V L+ +Y + G + AR+
Sbjct: 108 SPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARK 167
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF ++ +R++V+WNS+I G+ NGF EA+ F+ M++ + D +F L+AC+H G
Sbjct: 168 VFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGA 227
Query: 279 IEDG 282
G
Sbjct: 228 FSLG 231
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 19/157 (12%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V W S IS + ++G EA F RM+ G P TFV++LS CA +
Sbjct: 176 SIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVH 235
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
NV++ T+L++MY + G + A VFD M R WTA+++G+ Y
Sbjct: 236 EYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGS 295
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG 181
+A+E F M+ +G+ P+ +T ++VL+ CA+ + G
Sbjct: 296 QAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEG 332
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 156/315 (49%), Gaps = 50/315 (15%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSN- 96
T T V W S I + G EA L F +MR +G P TFV LLS C+ D
Sbjct: 150 TDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGR 209
Query: 97 -------------NVMVSTALLDMYAK-------------------------------FG 112
+++V AL+DMYAK G
Sbjct: 210 YVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHG 269
Query: 113 RMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN 170
+++A +FD M G + W ++++ +++ + EAL+ F M+ S V PD T++S+L
Sbjct: 270 SIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILA 329
Query: 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS 230
C+ + L +G +H Y+ V + N+L+D+Y++ G + A +F M + LVS
Sbjct: 330 ACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVS 389
Query: 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
WN II A++G EA++ F MQ DE++ TG L+ACSH+GL++ GL YFD M
Sbjct: 390 WNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMG 449
Query: 291 KIYRVSPQIEHHGCI 305
IYRV +IEH+ C+
Sbjct: 450 VIYRVPREIEHYACM 464
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 121/280 (43%), Gaps = 50/280 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
+ S I + S ++A L F RM G +P+ T +L C +
Sbjct: 56 YNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAI 115
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
+ V V AL+ +Y G + A +FD + W +++ G+ ++EA
Sbjct: 116 KLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFL 175
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
FR M+ G+EPD T +++L+VC+ R L +G ++H + K ++ V N L+D+Y+
Sbjct: 176 LFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYA 235
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG----------------------- 245
+ G + A+ +F R ++ +VSW S+I +A +G +
Sbjct: 236 KCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISC 295
Query: 246 --------EALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
EAL+ FN M+ DE + L ACS G
Sbjct: 296 YLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLG 335
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 135/212 (63%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+V++ ++D Y + G +++A +FD M R W ++ G+ + +F+EA+E FR M
Sbjct: 168 GDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREM 227
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q++ V P+Y+T++SVL + + L +G W+H Y + + + + + L+D+Y++ G I
Sbjct: 228 QMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSI 287
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A QVF+ + KR +V+W++II G A++G + L++F M++ +V++ G L+AC
Sbjct: 288 EKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSAC 347
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SHAGL+ +G +FD M ++ + P+IEH+GC+
Sbjct: 348 SHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCM 379
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 28/189 (14%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V W I+ + +SG EA F M++ P+++T V++L + +
Sbjct: 200 SVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVH 259
Query: 96 -----NNV----MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
NN+ ++ +AL+DMYAK G ++ A VF+ + R W+ ++ G +
Sbjct: 260 LYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAK 319
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+ L++F M+ +GV P +T I +L+ C++ + G W F VRV + L
Sbjct: 320 DTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWF--------FDHMVRV-SGLE 370
Query: 205 DVYSRFGCI 213
+GC+
Sbjct: 371 PRIEHYGCM 379
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
K+ +V + N ++D Y R G +E AR +F M +R++VSWN +I G+A +G EA+E
Sbjct: 163 KRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVE 222
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
F MQ + V+ L A S G +E G
Sbjct: 223 VFREMQMAEVPPNYVTLVSVLPAMSRLGALELG 255
>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
Length = 513
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 148/274 (54%), Gaps = 20/274 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
WTS I+ + ++ EA M P+ TF +LL S
Sbjct: 9 WTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTV 68
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALE 148
++V V +ALLDMYA+ GRMD+A VFD + + W AL+ GF ++ E L
Sbjct: 69 KYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLL 128
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F MQ +G E + T SV + A + L G W+H ++ K + + V NT++D+Y+
Sbjct: 129 MFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYA 188
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G + AR+VF + K+ LV+WNS++ FA G EA+ +F M+K ++++F
Sbjct: 189 KSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLS 248
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
LTACSH GL+++G QYFD+MK+ + + P+I+H+
Sbjct: 249 ILTACSHGGLVKEGKQYFDMMKE-HNLEPEIDHY 281
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 20/210 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + I+ R G L F M+ G +H T+ ++ S A +
Sbjct: 108 VSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAH 167
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ V +LDMYAK G M A VFD + D W ++L F + EA
Sbjct: 168 MIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREA 227
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ +F M+ GV + +T +S+L C++ + G + + + + + T++D+
Sbjct: 228 VTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDL 287
Query: 207 YSRFGCIEFARQ-VFQRMHKRTLVSWNSII 235
R G + A +F+ K T W +++
Sbjct: 288 LGRAGLLNDALVFIFKMPMKPTAAVWGALL 317
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 131/211 (62%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++MV LL MYAK G ++ A F+ M R +TA+++G+V+ EE L F MQ
Sbjct: 359 DLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQ 418
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+SG+ P+ T+ SVL CA++ L G H Y F + +CN L+D+Y++ G I+
Sbjct: 419 LSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKID 478
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
AR+VF RMHKR +VSWN++I+ + ++G EAL F+ MQ K D+V+F ++ACS
Sbjct: 479 TARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACS 538
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H+GL+ +G +F+ M + + + P++EH+ C+
Sbjct: 539 HSGLVAEGKYWFNAMTQDFGIIPRMEHYACM 569
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 122/255 (47%), Gaps = 25/255 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V W I + +G EA + +M YG P+ TF +L C+
Sbjct: 84 VVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHC 143
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGF-VKRDYFE 144
+NV VSTAL+D YAK G +D A VFD M D W ++++GF + ++
Sbjct: 144 DIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYD 203
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E MQ + V P+ TI+ VL A V +L G +H + ++ F +V V ++
Sbjct: 204 EVARLLVQMQ-NDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGIL 262
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFN---LMQKGVFK 260
DVY + CI++AR++F M + V+W++++ + V F+ EALE F +++ V
Sbjct: 263 DVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIV 322
Query: 261 TDEVSFTGALTACSH 275
V+ + C++
Sbjct: 323 LSAVTLATVIRVCAN 337
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 11/192 (5%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEALEYFRV 152
+V+V T +LD+Y K +D A +FD+M + W+A++ +V D+ EALE F
Sbjct: 253 GDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELF-- 310
Query: 153 MQISGVEPDYL-----TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
Q+ ++ D + T+ +V+ VCAN+ L G +H Y K F ++ V NTL+ +Y
Sbjct: 311 CQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMY 370
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
++ G I A + F M R VS+ +II G+ NG E L F MQ ++ +
Sbjct: 371 AKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLA 430
Query: 268 GALTACSH-AGL 278
L AC+H AGL
Sbjct: 431 SVLPACAHLAGL 442
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 6/184 (3%)
Query: 104 LLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
L+D+Y + +A VFD M + W L+ + +EEA++ + M G+
Sbjct: 57 LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
P+ T VL C+ ++ G +H + + + NV V L+D Y++ GC++ A++V
Sbjct: 117 PNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEV 176
Query: 220 FQRMHKRTLVSWNSIIVGFAVN-GFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
F +MHKR +V+WNS+I GF+++ G E MQ V + + G L A +
Sbjct: 177 FDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDV-SPNSSTIVGVLPAVAQVNS 235
Query: 279 IEDG 282
+ G
Sbjct: 236 LRHG 239
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 24/201 (11%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
V +T+ IS + ++G E F M+L G NP T ++L CA
Sbjct: 391 AVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHC 450
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+ + M+ AL+DMYAK G++D A VFD M RG W ++ + E
Sbjct: 451 YAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLE 510
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-LWMHRYVPKQDFKDNVRVCN--T 202
AL F MQ G++PD +T I +++ C++ + G W + QDF R+ +
Sbjct: 511 ALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMT--QDFGIIPRMEHYAC 568
Query: 203 LMDVYSRFGCIEFARQVFQRM 223
++D+ SR G + ++M
Sbjct: 569 MVDLLSRAGLFKEVHSFIEKM 589
>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 878
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 148/276 (53%), Gaps = 16/276 (5%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG-------------CAD 92
V WT+ I ++ +A F +M G P+H T+ T+L+G
Sbjct: 374 VTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKA 433
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
+ V+TALLD Y K G + + VF + D W+A+L G + E+A+E F
Sbjct: 434 YYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVF 493
Query: 151 RVMQISGVEPDYLTIISVLNVCAN-VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
+ GV+P+ T SV+N C++ T+ G +H K + + V + L+ +YS+
Sbjct: 494 IQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSK 553
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G IE A +VF R +R +VSWNS+I G+ +G +ALE F +MQ D+V+F G
Sbjct: 554 KGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGV 613
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTAC+HAGL+E+G +YF+IM K Y + +IEH+ C+
Sbjct: 614 LTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCM 649
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 13/202 (6%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V V T+L+DMY K + +FD M + WT+LL+G+ + +E + MQ
Sbjct: 138 DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQ 197
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ GV P+ T +VL A+ + G+ +H + K F+ VCN L+ +Y + +
Sbjct: 198 MEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVG 257
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A VF M R V+WN +I G+A GF E + F+ M+ K F AL CS
Sbjct: 258 DAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCS 317
Query: 275 -----------HAGLIEDGLQY 285
H G++++G ++
Sbjct: 318 QQRELNFTKQLHCGVVKNGYEF 339
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 117/278 (42%), Gaps = 23/278 (8%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
I V WTS +S + R+G E +M++ G NP+ TF T+L AD
Sbjct: 167 IKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQ 226
Query: 95 ----------SNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDY 142
V AL+ MY K + A VFD V+R W ++ G+ +
Sbjct: 227 VHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGF 286
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+ E + F M+++GV+ + L +C+ R L +H V K ++ +
Sbjct: 287 YLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTA 346
Query: 203 LMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
LM YS+ ++ A ++F +V+W ++I GF N +A++ F M + +
Sbjct: 347 LMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRP 406
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299
+ +++ L + L + Q I+K Y P +
Sbjct: 407 NHFTYSTVLAGKPSSLLSQLHAQ---IIKAYYEKVPSV 441
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 81/168 (48%)
Query: 124 MRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
++ + LL F + ++ EAL F+ + SG+ D LT+ L VC + +G
Sbjct: 66 LKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQ 125
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H K F ++V V +L+D+Y + E R +F M + +VSW S++ G+A NG
Sbjct: 126 VHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGL 185
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
E + N MQ + +F L A + +IE G+Q ++ K
Sbjct: 186 NDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVK 233
>gi|115446089|ref|NP_001046824.1| Os02g0468800 [Oryza sativa Japonica Group]
gi|47497329|dbj|BAD19370.1| selenium binding protein-like protein [Oryza sativa Japonica Group]
gi|113536355|dbj|BAF08738.1| Os02g0468800 [Oryza sativa Japonica Group]
gi|125582005|gb|EAZ22936.1| hypothetical protein OsJ_06625 [Oryza sativa Japonica Group]
Length = 603
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 147/281 (52%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVM---- 99
+ V WT+ S + G LE F RMR G N + V L+S F + +V
Sbjct: 219 SVVTWTALASGYLLRGDYLEVFDLFNRMRGVGKNVDSVVLVNLISAAVLFGNLSVAKGVH 278
Query: 100 -------------VSTALLDMYAKFGRMDLATVVFDV--MRGCDFWTALLNGFVKRDYFE 144
++ +L+++YAK G ++ A VFD M WT++++G+V+ +
Sbjct: 279 ALIIKLGFECEEDLAASLINLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLN 338
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL F M + +EP+ T+ SVL+ CA + + +G + RV L+
Sbjct: 339 EALVMFDSMVCANIEPNEATLSSVLSACAKLGSANLGKKVEEQAIATGLHSEPRVATGLI 398
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+YS+FG I AR++F+ + R + W+++I G+A NG EAL F M+ F+ D +
Sbjct: 399 DMYSKFGSINLARKIFEGVTNRDIAVWSAMINGYACNGEGSEALVLFKEMKNKGFQPDGI 458
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+FT LTAC+++GL+++GL+ F M Y + P IEHH C+
Sbjct: 459 AFTHVLTACNYSGLVDEGLECFHSMTMEYGIEPSIEHHMCM 499
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 20/254 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN------ 97
T V W ++ + RS + E+ F MR G PS T V +LSGC D S +
Sbjct: 117 TLVSWNCMVAAYGRSSQVEESVAVFNAMRRAGVRPSEGTLVGVLSGCVDSVSASNPGMCV 176
Query: 98 ------------VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
+ V ++L M + +D A ++FD + + WTAL +G++ R +
Sbjct: 177 YGFSVKSGLDAGLPVLNSVLTMLVRGSHLDAARLLFDGICNKSVVTWTALASGYLLRGDY 236
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
E + F M+ G D + ++++++ L + +H + K F+ + +L
Sbjct: 237 LEVFDLFNRMRGVGKNVDSVVLVNLISAAVLFGNLSVAKGVHALIIKLGFECEEDLAASL 296
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+++Y++ G +E AR+VF +H +V W S+I G+ G + EAL F+ M + +E
Sbjct: 297 INLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLNEALVMFDSMVCANIEPNE 356
Query: 264 VSFTGALTACSHAG 277
+ + L+AC+ G
Sbjct: 357 ATLSSVLSACAKLG 370
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 5/179 (2%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
V V T+LLDMYAK GR+ A +FD M W ++ + + EE++ F M+
Sbjct: 87 VFVRTSLLDMYAKCGRLPDARRLFDEMPRPTLVSWNCMVAAYGRSSQVEESVAVFNAMRR 146
Query: 156 SGVEPDYLTIISVLNVCAN-VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+GV P T++ VL+ C + V G+ ++ + K + V N+++ + R ++
Sbjct: 147 AGVRPSEGTLVGVLSGCVDSVSASNPGMCVYGFSVKSGLDAGLPVLNSVLTMLVRGSHLD 206
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK-TDEVSFTGALTA 272
AR +F + +++V+W ++ G+ + G E + FN M +GV K D V ++A
Sbjct: 207 AARLLFDGICNKSVVTWTALASGYLLRGDYLEVFDLFNRM-RGVGKNVDSVVLVNLISA 264
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%)
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T S+ CA +R +G +H + V V +L+D+Y++ G + AR++F M
Sbjct: 54 TFPSLAKSCAALRLPRLGAAVHAHALLAGAASAVFVRTSLLDMYAKCGRLPDARRLFDEM 113
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ TLVSWN ++ + + V E++ FN M++ + E + G L+ C
Sbjct: 114 PRPTLVSWNCMVAAYGRSSQVEESVAVFNAMRRAGVRPSEGTLVGVLSGC 163
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 139/263 (52%), Gaps = 25/263 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V W + ++ R G + A + F RM P N+ +L
Sbjct: 173 VAWNAVVTACFRCGDVKGADMMFNRM----------------------PFRNLTSWNVML 210
Query: 106 DMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
Y K G ++LA +F M D W+ ++ GF +F EA +FR +Q G+ P+ +
Sbjct: 211 AGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEV 270
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
++ L+ CA+ + G +H ++ K F V V N L+D YS+ G + AR VF+RM
Sbjct: 271 SLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERM 330
Query: 224 -HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
KR++VSW S+I G A++G+ EA++ F+ M++ + D ++F L ACSHAGLIE G
Sbjct: 331 PEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKG 390
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
+YF MK IY + P IEH+GC+
Sbjct: 391 YEYFYKMKDIYNIEPAIEHYGCM 413
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 85/213 (39%), Gaps = 63/213 (29%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
L+ G + D + +L F M+ P D + +L A+ R+L G+ +H
Sbjct: 76 LIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVH 135
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQ------------------------------ 221
++ V TL+ +YS G + FA++VF+
Sbjct: 136 GLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMF 195
Query: 222 -RMHKRTLVSWN-------------------------------SIIVGFAVNGFVGEALE 249
RM R L SWN ++IVGFA NGF EA
Sbjct: 196 NRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFG 255
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+F +Q+ + +EVS TGAL+AC+ AG IE G
Sbjct: 256 FFRELQQVGMRPNEVSLTGALSACADAGAIEFG 288
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 156/281 (55%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V WT+ I+ + R + E F RM P+ IT ++L+ C +
Sbjct: 196 SIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLH 255
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++ ++TAL+DMY K G + A +FD M+ D WTA+++ + + + +
Sbjct: 256 AYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCID 315
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
A + F M+ +GV P+ LT++S+L++CA L +G W H Y+ KQ + +V + L+
Sbjct: 316 YAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALI 375
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G I A+++F R + +WN ++ G+ ++G+ +AL+ F M+ K +++
Sbjct: 376 DMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDI 435
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F GAL ACSHAGL+ +G F+ M + + P++EH+GC+
Sbjct: 436 TFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCM 476
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 143/331 (43%), Gaps = 56/331 (16%)
Query: 4 PAIATILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISR----HCR-- 57
P +T + P P Q++N++ +K P T N+ +D T Q + I+R H +
Sbjct: 26 PPPSTFTKTPQNPSPQHQNKH-QKHPSF---TPNNHLCLDQTQQLHAHITRTHFNHAQQV 81
Query: 58 SGCILEA----ALE-FTRMRLYGTNPSHITFVTLLSGCAD------------FPSNNVMV 100
S E+ AL +T MR ++L C+ F N +V
Sbjct: 82 SFSPFESHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLV 141
Query: 101 S-----TALLDMYAKFGRMDLATVVFDVMRGCDF------------------------WT 131
S AL+ MY++ G + A ++FD M D WT
Sbjct: 142 SDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWT 201
Query: 132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
A++ G+++ + EE F M V P+ +T++S++ C V + +G +H Y+ +
Sbjct: 202 AMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRN 261
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
F ++ + L+D+Y + G I AR +F M + +++W ++I +A + A + F
Sbjct: 262 GFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLF 321
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M+ + +E++ L+ C+ G ++ G
Sbjct: 322 VQMRDNGVRPNELTMVSLLSLCAVNGALDMG 352
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 141/258 (54%), Gaps = 20/258 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSNNV-----------------MVSTALLDMYAK 110
+ RM +PS+ TF +++ CAD + + V AL+ Y+K
Sbjct: 95 YRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSK 154
Query: 111 FGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G M+ A VFD M + W +L++GF + +EA++ F M+ SG EPD T +S+
Sbjct: 155 CGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSL 214
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ CA + +G W+H+Y+ + NV++ L+++YSR G + AR+VF +M + +
Sbjct: 215 LSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNV 274
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFD 287
+W ++I + +G+ +A+E FN M+ + V+F L+AC+HAGL+E+G +
Sbjct: 275 AAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYK 334
Query: 288 IMKKIYRVSPQIEHHGCI 305
M K YR+ P +EHH C+
Sbjct: 335 RMTKSYRLIPGVEHHVCM 352
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 20/167 (11%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN------- 96
+ V W S +S ++G EA F +MR G P TFV+LLS CA +
Sbjct: 172 SIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVH 231
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
NV + TAL+++Y++ G + A VFD M+ + WTA+++ + Y +
Sbjct: 232 QYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQ 291
Query: 145 EALEYFRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
+A+E F M+ G P+ +T ++VL+ CA+ + G +++ + K
Sbjct: 292 QAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTK 338
>gi|218190710|gb|EEC73137.1| hypothetical protein OsI_07160 [Oryza sativa Indica Group]
Length = 603
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 147/281 (52%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVM---- 99
+ V WT+ S + G LE F RMR G N + V L+S F + +V
Sbjct: 219 SVVTWTALASGYLLRGDYLEVFDLFNRMRGVGQNVDSVVLVNLISAAVLFGNLSVAKGVH 278
Query: 100 -------------VSTALLDMYAKFGRMDLATVVFDV--MRGCDFWTALLNGFVKRDYFE 144
++ +L+++YAK G ++ A VFD M WT++++G+V+ +
Sbjct: 279 ALIIKLGFECEEDLAASLINLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLN 338
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL F M + +EP+ T+ SVL+ CA + + +G + RV L+
Sbjct: 339 EALVMFDSMVCANIEPNEATLSSVLSACAKLGSANLGKKVEEQAIATGLHSEPRVATGLI 398
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+YS+FG I AR++F+ + R + W+++I G+A NG EAL F M+ F+ D +
Sbjct: 399 DMYSKFGSINLARKIFEGVTNRDIAVWSAMINGYACNGEGSEALVLFKEMKNKGFQPDGI 458
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+FT LTAC+++GL+++GL+ F M Y + P IEHH C+
Sbjct: 459 AFTHVLTACNYSGLVDEGLECFHSMTMEYGIEPSIEHHMCM 499
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 20/254 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN------ 97
T V W ++ + RS + E+ F MR G PS T V +LSGC D S +
Sbjct: 117 TLVSWNCMVAAYGRSSQVEESVAVFNAMRRAGVRPSEGTLVGVLSGCVDSVSASNPGMCV 176
Query: 98 ------------VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
+ V ++L M + +D A ++FD + + WTAL +G++ R +
Sbjct: 177 YGFSVKSGLDAGLPVLNSVLTMLVRGSHLDAARLLFDGICNKSVVTWTALASGYLLRGDY 236
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
E + F M+ G D + ++++++ L + +H + K F+ + +L
Sbjct: 237 LEVFDLFNRMRGVGQNVDSVVLVNLISAAVLFGNLSVAKGVHALIIKLGFECEEDLAASL 296
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+++Y++ G +E AR+VF +H +V W S+I G+ G + EAL F+ M + +E
Sbjct: 297 INLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLNEALVMFDSMVCANIEPNE 356
Query: 264 VSFTGALTACSHAG 277
+ + L+AC+ G
Sbjct: 357 ATLSSVLSACAKLG 370
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 3/178 (1%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
V V T+LLDMYAK GR+ A +FD M W ++ + + EE++ F M+
Sbjct: 87 VFVRTSLLDMYAKCGRLPDARRLFDEMPRPTLVSWNCMVAAYGRSSQVEESVAVFNAMRR 146
Query: 156 SGVEPDYLTIISVLNVCAN-VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+GV P T++ VL+ C + V G+ ++ + K + V N+++ + R ++
Sbjct: 147 AGVRPSEGTLVGVLSGCVDSVSASNPGMCVYGFSVKSGLDAGLPVLNSVLTMLVRGSHLD 206
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
AR +F + +++V+W ++ G+ + G E + FN M+ D V ++A
Sbjct: 207 AARLLFDGICNKSVVTWTALASGYLLRGDYLEVFDLFNRMRGVGQNVDSVVLVNLISA 264
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%)
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T S+ CA +R +G +H + V V +L+D+Y++ G + AR++F M
Sbjct: 54 TFPSLAKSCAALRLPRLGAAVHAHALLAGAASAVFVRTSLLDMYAKCGRLPDARRLFDEM 113
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ TLVSWN ++ + + V E++ FN M++ + E + G L+ C
Sbjct: 114 PRPTLVSWNCMVAAYGRSSQVEESVAVFNAMRRAGVRPSEGTLVGVLSGC 163
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 135/211 (63%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V++ ++D Y + G +++A +FD M R W ++ G+ + +F+EA+E FR MQ
Sbjct: 192 DVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQ 251
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
++ V P+Y+T++SVL + + L +G W+H Y + + + + + L+D+Y++ G IE
Sbjct: 252 MAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIE 311
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A QVF+ + KR +V+W++II G A++G + L++F M++ +V++ G L+ACS
Sbjct: 312 KALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACS 371
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
HAGL+ +G +FD M ++ + P+IEH+GC+
Sbjct: 372 HAGLVNEGRWFFDHMVRVSGLEPRIEHYGCM 402
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V W I+ + +SG EA F M++ P+++T V++L + +
Sbjct: 223 SVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVH 282
Query: 96 -----NNV----MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
NN+ ++ +AL+DMYAK G ++ A VF+ + R W+ ++ G +
Sbjct: 283 LYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAK 342
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
+ L++F M+ +GV P +T I +L+ C++ + G W
Sbjct: 343 DTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRW 381
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
K+ +V + N ++D Y R G +E AR +F M +R++VSWN +I G+A +G EA+E
Sbjct: 186 KRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVE 245
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
F MQ + V+ L A S G +E G
Sbjct: 246 VFREMQMAEVPPNYVTLVSVLPAMSRLGALELG 278
>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Cucumis sativus]
Length = 712
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 153/287 (53%), Gaps = 26/287 (9%)
Query: 41 TIDTTVQWTSSISRHCRSG---CILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-- 95
T+D V WT+ ++ + + G C L+A F RMR P+ TF ++S CA+F
Sbjct: 280 TLDV-VSWTTIVTAYIQMGKEDCGLQA---FKRMRASNVIPNEYTFSAVISCCANFARLK 335
Query: 96 ---------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFV 138
N + V+ +++ +Y+K G + + VF M+ D W+ ++ +
Sbjct: 336 WGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYS 395
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ Y EEA EY M+ G +P+ + SVL+VC ++ L G +H +V +
Sbjct: 396 QVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSM 455
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
VC+ L+ +Y++ G I A ++F K ++SW ++I G+A +G EA+E F +QK
Sbjct: 456 VCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVG 515
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D V+F G LTACSHAG+++ G YF+ M K Y ++P EH+GC+
Sbjct: 516 LRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCM 562
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 126/290 (43%), Gaps = 42/290 (14%)
Query: 30 QISIQTNNSKSTID--------TTVQWTSSISRHCRSGCILEAALEFTRMRL-------- 73
+I ++TN+ K D V WT+ IS + S EA F++MRL
Sbjct: 57 KILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDP 116
Query: 74 -----------------YGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDL 116
YGTN + T L N+V V +ALLDMY K G +
Sbjct: 117 FLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLV-------NSVFVGSALLDMYMKIGEIGR 169
Query: 117 ATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
+ VFD M R WTA++ G V+ Y E L YF M S VE D L A+
Sbjct: 170 SCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASAD 229
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
L G +H K+ F +N V N+L +Y++ G +++ F++M +VSW +I
Sbjct: 230 SGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTI 289
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ + G L+ F M+ +E +F+ ++ C++ ++ G Q
Sbjct: 290 VTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQ 339
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 147/285 (51%), Gaps = 25/285 (8%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVM--- 99
D V W S I R G +A F +MR + I TL S F S VM
Sbjct: 4 DDEVSWNSLILGCVREGFEEDALSFFQKMR---SRDMKIDEYTLPSVLNSFASMKVMQNA 60
Query: 100 -----------------VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKR 140
V+ AL+DMYAK G++D A +VF M D WT+L+ G+
Sbjct: 61 ISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHN 120
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
+EEA++ F M+ISGV PD + + SVL+ CA + + G +H + K + ++ V
Sbjct: 121 GSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVD 180
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N+L+ +Y++ G I A + F M R ++SW ++IVG+A NG +L++++ M K
Sbjct: 181 NSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTK 240
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D ++F G L ACSH GL+ G YF+ M K+Y + P EH+ C+
Sbjct: 241 PDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACM 285
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 25/246 (10%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--- 94
SK V WTS ++ + +G EA F +MR+ G P I ++LS CA+
Sbjct: 100 SKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMD 159
Query: 95 --------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFV 138
+++ V +L+ MYAK G + A FD M D WTAL+ G+
Sbjct: 160 FGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYA 219
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNV 197
+ + +L+++ M +G +PDY+T I +L C++ LG G + K K
Sbjct: 220 QNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGP 279
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
++D+ R G + A+ + +M V W +++ V+ + LE + K
Sbjct: 280 EHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVH----KELELGEMAAK 335
Query: 257 GVFKTD 262
+F+ +
Sbjct: 336 NLFELE 341
>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g47840-like [Cucumis
sativus]
Length = 712
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 153/287 (53%), Gaps = 26/287 (9%)
Query: 41 TIDTTVQWTSSISRHCRSG---CILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-- 95
T+D V WT+ ++ + + G C L+A F RMR P+ TF ++S CA+F
Sbjct: 280 TLDV-VSWTTIVTAYIQMGKEDCGLQA---FKRMRASNVIPNEYTFSAVISCCANFARLK 335
Query: 96 ---------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFV 138
N + V+ +++ +Y+K G + + VF M+ D W+ ++ +
Sbjct: 336 WGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYS 395
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ Y EEA EY M+ G +P+ + SVL+VC ++ L G +H +V +
Sbjct: 396 QVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSM 455
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
VC+ L+ +Y++ G I A ++F K ++SW ++I G+A +G EA+E F +QK
Sbjct: 456 VCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVG 515
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D V+F G LTACSHAG+++ G YF+ M K Y ++P EH+GC+
Sbjct: 516 LRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCM 562
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 125/290 (43%), Gaps = 42/290 (14%)
Query: 30 QISIQTNNSKSTID--------TTVQWTSSISRHCRSGCILEAALEFTRMRL-------- 73
+I ++TN+ K D V WT+ IS + S EA F++MRL
Sbjct: 57 KILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDP 116
Query: 74 -----------------YGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDL 116
YGTN + L N+V V +ALLDMY K G +
Sbjct: 117 FLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLV-------NSVFVGSALLDMYMKIGEIGR 169
Query: 117 ATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
+ VFD M R WTA++ G V+ Y E L YF M S VE D L A+
Sbjct: 170 SCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASAD 229
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
L G +H K+ F +N V N+L +Y++ G +++ F++M +VSW +I
Sbjct: 230 SGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTI 289
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ + G L+ F M+ +E +F+ ++ C++ ++ G Q
Sbjct: 290 VTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQ 339
>gi|52076160|dbj|BAD46673.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 678
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 151/313 (48%), Gaps = 51/313 (16%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V W + + H RSG + F +M + G T L+ CA+ P
Sbjct: 220 SNVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTCDDATLCILVDACAELPDPSTGFAIH 279
Query: 96 --------------NNVMVS--------------------------TALLDMYAKFGRMD 115
NN ++S +L+D +A+FG ++
Sbjct: 280 KVVVQSGWNGIPEVNNSLISFYTKFSLLDCAVQIFESMKTRTTASWNSLIDAHARFGYIE 339
Query: 116 LATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF-RVMQISGVEPDYLTIISVLNVC 172
A ++F+ + WTA++ GF + EAL +F +++ ++PD T +VL+ C
Sbjct: 340 QAALLFESAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEYIQPDDFTFGAVLHAC 399
Query: 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
A+ L G +H + F + V N L+D+Y++ G +E A VF +H++ LVSWN
Sbjct: 400 ASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANNVFDAIHQKDLVSWN 459
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
+++ GFA+NG EALE + +M DEV+FTG LTACSH+GL+E G +F+ M +
Sbjct: 460 TMLFGFAINGLPKEALEVYEIMTYHNVSPDEVTFTGLLTACSHSGLLEQGRAFFESMMSV 519
Query: 293 YRVSPQIEHHGCI 305
+ V P+ EH C+
Sbjct: 520 HGVQPKPEHLSCV 532
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 6/209 (2%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ P N + +LL + G M+LA +FD M + W LL G + ++ L
Sbjct: 184 EMPERNALSWCSLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLAL 243
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F M +SG+ D T+ +++ CA + G +H+ V + + V N+L+ Y++
Sbjct: 244 FNQMWMSGLTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTK 303
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
F ++ A Q+F+ M RT SWNS+I A G++ +A F + +T+ +S+T
Sbjct: 304 FSLLDCAVQIFESMKTRTTASWNSLIDAHARFGYIEQAALLF----ESAPETNIISWTAM 359
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQ 298
+ + L + L +F M + P
Sbjct: 360 IGGFARNSLTSEALAHFVKMLTQEYIQPD 388
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 130/211 (61%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
N++ AL+ +AK G + A +FD M D WT+++ G+ + F +A++ F+ M
Sbjct: 282 NIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMM 341
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ V+PD +T+ SVL+ CA++ L +G +H Y+ + + ++ V N+L+D+Y + G +E
Sbjct: 342 AAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVE 401
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +VF RM + VSW S+I G AVNGF AL+ F+ M + + +F G L AC+
Sbjct: 402 KALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACA 461
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
HAGL+ GL+YF+ M+ ++ + P ++H+GC+
Sbjct: 462 HAGLVNKGLEYFESMESVHGLVPAMKHYGCV 492
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 129/265 (48%), Gaps = 23/265 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSNN--- 97
T V W I +S +EA +TRM G +++T + L CA D S
Sbjct: 80 TLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIH 139
Query: 98 -----------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ VS AL+ MYA G++ A +FD M D W L+ G+ + + ++
Sbjct: 140 VHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYK 199
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E L F M + ++ D +T++ ++ C+++ M +Y+ + + + +V + NTL+
Sbjct: 200 EVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLI 259
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y R E A+ VF RM +R +VSWN++++G A G + A + F+ M K D +
Sbjct: 260 DMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMP----KRDVI 315
Query: 265 SFTGALTACSHAGLIEDGLQYFDIM 289
S+T +T S A D ++ F M
Sbjct: 316 SWTSMITGYSQASQFSDAVKLFQEM 340
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 8/177 (4%)
Query: 101 STALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
ST L + F +++ T+V W ++ G + D+ EA+ + M G+
Sbjct: 63 STNLHKAHLVFNQIECPTLVV--------WNHMIRGLSQSDHPVEAIHMYTRMHHQGITG 114
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
+ LT+I + CA V + G +H + K F+ + V N L+ +Y+ G + FA+++F
Sbjct: 115 NNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMF 174
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
M R LVSWN++I G++ E L F+ M K D V+ + ACSH G
Sbjct: 175 DGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLG 231
>gi|326528345|dbj|BAJ93354.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 609
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 150/286 (52%), Gaps = 25/286 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG---CADFPSNNVM-- 99
V WTS ISR +SG L+A F M P + VT+L D P
Sbjct: 179 VVSWTSLISRLVQSGSPLQALRLFAAMMCCDVRPDFVLLVTVLKAYMELDDLPGAQSAHS 238
Query: 100 ------------VSTALLDMYAKFGRMDLATVVFDVMR----GCDFWTALLNGFVKRDYF 143
V T L MYAKFG + A +FD + W A+++G+ K
Sbjct: 239 LVVKGGFDDEQDVVTTLTAMYAKFGCIVAARALFDRIPPPRVNVILWNAMISGYSKNGLA 298
Query: 144 EEALEYFRVMQI--SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
EA+ F+ MQ+ + PD +T+ SV+ CA + + + +WM YV + + +++V V
Sbjct: 299 SEAVHLFKQMQVFARSMSPDSVTLRSVIMACAQLGSTELAVWMEDYVRRSECREDVLVNT 358
Query: 202 TLMDVYSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
L+D+Y++ G I AR+VF++MH +R +V W+++I G+ +G + EA+ F M+
Sbjct: 359 ALIDMYAKSGSIAHARRVFEQMHAQERDVVVWSALISGYGAHGHLAEAVGLFEDMKLAGV 418
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
K ++V+F G L+AC+HAG +E G YF MK +++ P+ +H+ C+
Sbjct: 419 KPNDVTFLGLLSACNHAGAVEKGWFYFHSMKPDHKIEPRHQHYACV 464
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 8/197 (4%)
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYFEEALEYFRVMQISGV 158
+L+ MY G A VFD MR C+ WT+L++ V+ +AL F M V
Sbjct: 151 SLIPMYFSCGDAGRARRVFDGMRDCERDVVSWTSLISRLVQSGSPLQALRLFAAMMCCDV 210
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
PD++ +++VL + L H V K F D V TL +Y++FGCI AR
Sbjct: 211 RPDFVLLVTVLKAYMELDDLPGAQSAHSLVVKGGFDDEQDVVTTLTAMYAKFGCIVAARA 270
Query: 219 VFQRM--HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ--KGVFKTDEVSFTGALTACS 274
+F R+ + ++ WN++I G++ NG EA+ F MQ D V+ + AC+
Sbjct: 271 LFDRIPPPRVNVILWNAMISGYSKNGLASEAVHLFKQMQVFARSMSPDSVTLRSVIMACA 330
Query: 275 HAGLIEDGLQYFDIMKK 291
G E + D +++
Sbjct: 331 QLGSTELAVWMEDYVRR 347
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 154/276 (55%), Gaps = 19/276 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------- 91
V W S I + G + EA F M + +++ T+L G
Sbjct: 12 VVSWNSMIRGLLKVGELSEACKLFDEMPM----KDAVSWNTILDGYVKAGEMNKAFGLFE 67
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
P NV+ + ++ Y K G M++A ++FD M + WT +++G+ + ++A+
Sbjct: 68 SMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRS 127
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F M+ +G++PD T+IS+L CA LG+G +H + + +K +V V N L+D+Y++
Sbjct: 128 FEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAK 187
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G ++ A VF M K+ LVSWN ++ G A++G +AL+ F++M++ F+ D+V+
Sbjct: 188 CGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAV 247
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L AC HAG +++G++YF+ M++ Y + P IEH+GC+
Sbjct: 248 LCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCM 283
>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
Length = 886
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 157/297 (52%), Gaps = 37/297 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ W++ I+ + + G EA F +M LYG+ P+ +T ++LLS CA +
Sbjct: 361 ITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAY 420
Query: 96 -------------------NNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTA 132
+++V AL+DMY+K A +F+ + R WT
Sbjct: 421 SLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTV 480
Query: 133 LLNGFVKRDYFEEALEYFRVM--QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
++ G+ + +AL+ F M + V P+ TI +L CA++ +L +G +H YV +
Sbjct: 481 MIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTR 540
Query: 191 Q-DFKDNVR-VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
+++ +V V N L+D+YS+ G ++ AR VF M KR VSW S++ G+ ++G EAL
Sbjct: 541 HHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEAL 600
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ F+ MQK F D++SF L ACSH+G+++ GL YFDIM+ Y V +H+ C+
Sbjct: 601 DIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACV 657
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 124/273 (45%), Gaps = 28/273 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V W + H G + A RM GT P H T L C + PS
Sbjct: 114 AVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHG 173
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCD---FWTALLNGFVKRDY 142
+NV V AL+ MY++ G ++ A++VFD + +G D W +++ VK
Sbjct: 174 LICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSN 233
Query: 143 FEEALEYFRVM------QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
AL+ F M + + D ++I+++L CA+++ L +H Y + +
Sbjct: 234 PRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFAD 293
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
VCN L+D Y++ G ++ A VF M + +VSWN+++ G+ +G G A E F M+K
Sbjct: 294 AFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRK 353
Query: 257 GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
D ++++ + + G ++ L F M
Sbjct: 354 ENIPLDVITWSAVIAGYAQRGYGQEALDTFQQM 386
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 136/323 (42%), Gaps = 76/323 (23%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLY----GTNPSH--ITFVTLLSGCA 91
++ ID + W S ++ H + A F+ M TN I+ V +L CA
Sbjct: 211 TRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACA 270
Query: 92 DFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMR--------- 125
+ + V AL+D YAK G M A VF+VM
Sbjct: 271 SLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNA 330
Query: 126 -----------GCDF-----------------WTALLNGFVKRDYFEEALEYFRVMQISG 157
G F W+A++ G+ +R Y +EAL+ F+ M + G
Sbjct: 331 MVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYG 390
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ------------DFKDNVRVCNTLMD 205
EP+ +TIIS+L+ CA++ L G+ H Y K+ +++ V N L+D
Sbjct: 391 SEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALID 450
Query: 206 VYSRFGCIEFARQVFQRM--HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+YS+ + AR +F + +R +V+W +I G+A G +AL+ F+ M +
Sbjct: 451 MYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAP 510
Query: 264 VSFTGA--LTACSHAGLIEDGLQ 284
++T + L AC+H + G Q
Sbjct: 511 NAYTISCILMACAHLSSLRMGKQ 533
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 148/279 (53%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ I +SG EA + M+ G P+ +T+ ++L+ C+ +
Sbjct: 395 ISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQ 454
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+ V L++MY+ G + A VFD M R + A++ G+ + +EA
Sbjct: 455 VVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEA 514
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F +Q G++PD +T I++LN CAN +L +H V K F + V N L+
Sbjct: 515 LKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVST 574
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G A VF++M KR ++SWN+II G A +G +AL+ F M+ K D V+F
Sbjct: 575 YAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTF 634
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSHAGL+E+G +YF M + + + P IEH+GC+
Sbjct: 635 VSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCM 673
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 130/259 (50%), Gaps = 21/259 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
+ V WT +I + G E A E F +M G P+ IT++++L+ + +
Sbjct: 191 SVVSWTITIGGYADCG-RSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAV 249
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYF 143
++ V TAL+ MYAK G VF+ + D W ++ G + Y+
Sbjct: 250 HSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYW 309
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EEA E + MQ GV P+ +T + +LN C N L G +H V K F ++ V N L
Sbjct: 310 EEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNAL 369
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+ +YSR G I+ AR VF +M ++ ++SW ++I G A +GF EAL + MQ+ + +
Sbjct: 370 ISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNR 429
Query: 264 VSFTGALTACSHAGLIEDG 282
V++T L ACS +E G
Sbjct: 430 VTYTSILNACSSPAALEWG 448
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 124/259 (47%), Gaps = 21/259 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN------- 96
T W + + + + G I +A +M+ +G P T ++ LS C P
Sbjct: 90 TVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKS-PGALEWGREI 148
Query: 97 -----------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
+V V+ +L+MYAK G ++ A VFD M + WT + G+
Sbjct: 149 HFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRS 208
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
E A E F+ M+ GV P+ +T ISVLN ++ L G +H + + + V L
Sbjct: 209 ETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTAL 268
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+ +Y++ G + RQVF+++ R L++WN++I G A G+ EA E +N MQ+ ++
Sbjct: 269 VKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNK 328
Query: 264 VSFTGALTACSHAGLIEDG 282
+++ L AC ++ + G
Sbjct: 329 ITYVILLNACVNSAALHWG 347
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 99/184 (53%), Gaps = 4/184 (2%)
Query: 103 ALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
AL++MY + G ++ A V+ + R W A++ G+++ Y E+AL+ R MQ G+
Sbjct: 63 ALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGL 122
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
PD TI+S L+ C + L G +H + +V+V N ++++Y++ G IE AR+
Sbjct: 123 APDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEARE 182
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF +M K+++VSW I G+A G A E F M++ + +++ L A S
Sbjct: 183 VFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAA 242
Query: 279 IEDG 282
++ G
Sbjct: 243 LKWG 246
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A++ + +Q G + + + +L C V+ L G +H+++ + + N L++
Sbjct: 7 AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66
Query: 206 VYSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+Y + G IE ARQV++++ +RT+ SWN+++VG+ G++ +AL+ MQ+ D
Sbjct: 67 MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126
Query: 264 VSFTGALTACSHAGLIEDGLQ-YFDIMK 290
+ L++C G +E G + +F M+
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQ 154
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 149/278 (53%), Gaps = 21/278 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
+ V WT+ I + R G + A F M F L+ G
Sbjct: 167 SLVSWTALIGGYVRRGDMGNAWFLFKLM----PGRDSAAFNLLIDGYVKVGDMESARSLF 222
Query: 92 -DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
+ P NV+ T+++ Y G + A +FD M + W A++ G+ + EAL+
Sbjct: 223 DEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALK 282
Query: 149 YFRVMQISGV-EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
FR +Q S V EP+ +T++S+L A + L +G W+HR+V ++ V VC +L+D+Y
Sbjct: 283 LFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMY 342
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
+ G I AR+VF + K+ +WN++I GFA+NG EALE F+ MQ+ K ++++ T
Sbjct: 343 LKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEGIKPNDITMT 402
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L+ACSH GL+E+G F M + +SP+IEH+GC+
Sbjct: 403 GVLSACSHGGLVEEGKGQFKAMIE-SGLSPKIEHYGCL 439
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 15/191 (7%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ VSTAL+DMYAKFG + LA VF+ M R WTAL+ G+V+R A F++M
Sbjct: 136 DMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGNAWFLFKLMP 195
Query: 155 ISGVEPDYLTIISVLNV--CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
L I + V + R+L +P++ NV +++ Y G
Sbjct: 196 GRDSAAFNLLIDGYVKVGDMESARSL------FDEMPER----NVISWTSMIYGYCNNGD 245
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG-VFKTDEVSFTGALT 271
+ AR +F M ++ LVSWN++I G+ N EAL+ F +Q VF+ +EV+ L
Sbjct: 246 VLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILP 305
Query: 272 ACSHAGLIEDG 282
A + G +E G
Sbjct: 306 AIATLGALELG 316
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLLSGCADFPS--------- 95
V W + I +C++ EA F ++ P+ +T V++L A +
Sbjct: 262 VSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHR 321
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
V V T+L+DMY K G + A VF + + W AL+NGF E
Sbjct: 322 FVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASE 381
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
ALE F MQ G++P+ +T+ VL+ C++ + G + + + + L+D
Sbjct: 382 ALEAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQFKAMIESGLSPKIEHYGCLVD 441
Query: 206 VYSRFGCIEFARQVFQRM 223
+ R GC++ A + + M
Sbjct: 442 LLGRAGCLDEAENLIKSM 459
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD T + CA + GL H +V K F ++ V L+D+Y++FG + AR+V
Sbjct: 100 PDNFTFTVLAKCCALRMAVWEGLETHGHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKV 159
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F M R+LVSW ++I G+ G +G A F LM D +F + G +
Sbjct: 160 FNDMPDRSLVSWTALIGGYVRRGDMGNAWFLFKLMP----GRDSAAFNLLIDGYVKVGDM 215
Query: 280 EDGLQYFDIMKK 291
E FD M +
Sbjct: 216 ESARSLFDEMPE 227
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 157/283 (55%), Gaps = 24/283 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V W + I+ + + C E ALE F M P T V++LS CA S
Sbjct: 181 VSWNAMITGYVEN-CGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHT 239
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+++ + A + +Y+K G +++A+ +F+ + D W L+ G+ + ++
Sbjct: 240 LVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYK 299
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVCNT 202
EAL F+ M SG P+ +T++SVL CA++ + IG W+H Y+ K + + + +
Sbjct: 300 EALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTS 359
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+Y++ G IE A QVF M ++L SWN++I GFA++G A + F+ M+K + D
Sbjct: 360 LIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPD 419
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+++ G L+ACSH+GL++ G F + + Y ++P++EH+GC+
Sbjct: 420 DITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCM 462
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 118/266 (44%), Gaps = 51/266 (19%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPS--------NNVM---------VSTALLDMYAK 110
+ RM G P+ TF LL CA + VM T+L+ MYA+
Sbjct: 71 YVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYAR 130
Query: 111 FGRMDLATVVFDVMRGCDF---------------------------------WTALLNGF 137
GR++ A VFD D W A++ G+
Sbjct: 131 NGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGY 190
Query: 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDN 196
V+ +EEALE F+ M + V PD T++SVL+ CA ++ +G +H V F +
Sbjct: 191 VENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSS 250
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
+++ N + +YS+ G +E A +F+ + + +VSWN++I G+ EAL F M +
Sbjct: 251 LKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLR 310
Query: 257 GVFKTDEVSFTGALTACSHAGLIEDG 282
++V+ L AC+H G I+ G
Sbjct: 311 SGESPNDVTMLSVLPACAHLGAIDIG 336
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 90/226 (39%), Gaps = 42/226 (18%)
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + A VF+ + + W +L G LE + M G P+ T +
Sbjct: 30 FDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFL 89
Query: 169 LNVCANVRTLGIGLWMHRYVPK-----------------------QDFKD--------NV 197
L CA +T G +H V K +D + +V
Sbjct: 90 LKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDV 149
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
C L+ Y+ G + AR+VF + +R +VSWN++I G+ N EALE F M +
Sbjct: 150 VSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRT 209
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303
+ DE + L+AC+ +G IE G + ++ +HHG
Sbjct: 210 NVRPDEGTLVSVLSACAQSGSIELGREIHTLVD---------DHHG 246
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 149/281 (53%), Gaps = 20/281 (7%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD-------- 92
T V W ++++ R G + A F M T +++ T+L G A
Sbjct: 263 TTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDT----VSWNTMLDGYAKAGEAEKAF 318
Query: 93 -----FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
P NV+ + ++ Y K G M++A V+FD M + WT +++ ++ EE
Sbjct: 319 ELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEE 378
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A F M + +E D + ++S+L CA +L +G +HR+V ++ + VCN LMD
Sbjct: 379 AGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMD 438
Query: 206 VYSRFGCIEFARQVFQ-RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
++ + GC+ A +F + ++ LVSWN II GFA++G +ALE F M++ F D V
Sbjct: 439 MFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAV 498
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ L+AC+H GL+E+G ++F M+ Y + PQIEH+GC+
Sbjct: 499 TLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCM 539
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+ + V AL+D Y+K + A VFD M D W + V++ + A F
Sbjct: 233 AEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDE 292
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M E D ++ ++L+ A + + +P + NV +T++ Y + G
Sbjct: 293 MP----EKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGR----NVVSWSTVVSAYCKKGD 344
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+E AR +F +M + LV+W ++ A G V EA F M + D ++ L A
Sbjct: 345 MEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAA 404
Query: 273 CSHAGLIEDGLQYFDIMKKIYR 294
C+ +G + G K+I+R
Sbjct: 405 CAESGSLALG-------KRIHR 419
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
H +V K ++ V N L+D YS+ + A++VF M R +VSWN+ + G V
Sbjct: 224 HAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEV 283
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
A F+ M + D VS+ L + AG E + F M
Sbjct: 284 DAARSMFDEMP----EKDTVSWNTMLDGYAKAGEAEKAFELFQRM 324
>gi|326504782|dbj|BAK06682.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 686
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 150/285 (52%), Gaps = 25/285 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG---CADFPSNNVM--- 99
V WTS ISR +SG L+A F M P + VT+L D P
Sbjct: 257 VSWTSLISRLVQSGSPLQALRLFAAMMCCDVRPDFVLLVTVLKAYMELDDLPGAQSAHSL 316
Query: 100 -----------VSTALLDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYFE 144
V T L MYAKFG + A +FD + W A+++G+ K
Sbjct: 317 VVKGGFDDEQDVVTTLTAMYAKFGCIVAARALFDRIPPPRVNVILWNAMISGYSKNGLAS 376
Query: 145 EALEYFRVMQI--SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
EA+ F+ MQ+ + PD +T+ SV+ CA + + + +WM YV + + +++V V
Sbjct: 377 EAVHLFKQMQVFARSMSPDSVTLRSVIMACAQLGSTELAVWMEDYVRRSECREDVLVNTA 436
Query: 203 LMDVYSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
L+D+Y++ G I AR+VF++MH +R +V W+++I G+ +G + EA+ F M+ K
Sbjct: 437 LIDMYAKSGSIAHARRVFEQMHAQERDVVVWSALISGYGAHGHLAEAVGLFEDMKLAGVK 496
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++V+F G L+AC+HAG +E G YF MK +++ P+ +H+ C+
Sbjct: 497 PNDVTFLGLLSACNHAGAVEKGWFYFHSMKPDHKIEPRHQHYACV 541
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 8/197 (4%)
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYFEEALEYFRVMQISGV 158
+L+ MY G A VFD MR C+ WT+L++ V+ +AL F M V
Sbjct: 228 SLIPMYFSCGDAGRARRVFDGMRDCERDVVSWTSLISRLVQSGSPLQALRLFAAMMCCDV 287
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
PD++ +++VL + L H V K F D V TL +Y++FGCI AR
Sbjct: 288 RPDFVLLVTVLKAYMELDDLPGAQSAHSLVVKGGFDDEQDVVTTLTAMYAKFGCIVAARA 347
Query: 219 VFQRM--HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ--KGVFKTDEVSFTGALTACS 274
+F R+ + ++ WN++I G++ NG EA+ F MQ D V+ + AC+
Sbjct: 348 LFDRIPPPRVNVILWNAMISGYSKNGLASEAVHLFKQMQVFARSMSPDSVTLRSVIMACA 407
Query: 275 HAGLIEDGLQYFDIMKK 291
G E + D +++
Sbjct: 408 QLGSTELAVWMEDYVRR 424
>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
Length = 529
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 151/280 (53%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + I+ + C + M P+ +T V++LS C+ +
Sbjct: 146 VMWNALIAAYAHGNCPYKVREVSYDMVSSNVKPNGVTAVSILSVCSSLRALREGKAVHGY 205
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+V V AL+D+Y+K G + A VF +M R WT+L+NG+ + EA
Sbjct: 206 VTKNLIEXDVFVHNALIDVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEA 265
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMD 205
L +F+ M+ + PD +T++ V+ +C+ +R+ +G W+ +YV K K++ + N LMD
Sbjct: 266 LGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKTGLVKESPAIANVLMD 325
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
++++ G I+ A Q+F M ++T+VSW +I G A+ G AL F MQ+ FK D +
Sbjct: 326 MHAKCGNIKRACQIFDGMEEKTIVSWTIMIQGLAMYGHGLSALVRFCQMQREGFKPDSLV 385
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L+ACSHAGL+++G + F M+ Y + P +EH+GC+
Sbjct: 386 FLSLLSACSHAGLVDEGWRCFSSMEADYHIXPWMEHYGCM 425
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 125/276 (45%), Gaps = 21/276 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
T W + I + EA L + +R G T V ++ C P
Sbjct: 44 TYTWNTIIRGYLEGNDPEEAILIYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHG 103
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
V++ TALL MY F +FD M R W AL+ + + +
Sbjct: 104 QIFKLGFEFEVIIQTALLSMYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYK 163
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
E M S V+P+ +T +S+L+VC+++R L G +H YV K + +V V N L+D
Sbjct: 164 VREVSYDMVSSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDVFVHNALID 223
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
VYS+ G I A QVFQ M R +VSW S+I G++ N EAL +F M+ + DE++
Sbjct: 224 VYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEIT 283
Query: 266 FTGALTACSHAGLIEDG--LQYFDIMKKIYRVSPQI 299
G + CS E G + + + + + SP I
Sbjct: 284 VLGVVCMCSKLRSFELGEWISQYVVKTGLVKESPAI 319
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 140/257 (54%), Gaps = 20/257 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADF-----------------PSNNVMVSTALLDMYAK 110
F RM G P TFV+LL CA +++ V L++MYA+
Sbjct: 121 FVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAE 180
Query: 111 FGRMDLATVVFDVMRG-CDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G A V+F G C + A++ V+ EAL FR MQ G++P +T+ISV
Sbjct: 181 CGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISV 240
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ CA + L +G W+H YV K V+V L+D+Y++ G +E A VFQ M +
Sbjct: 241 LSACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDR 300
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
+W+ +IV +A +G+ EA+ F M+K K D+++F G L ACSH+GL+ +GLQYFD
Sbjct: 301 QAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDD 360
Query: 289 MKKIYRVSPQIEHHGCI 305
MK + + P I+H+GC+
Sbjct: 361 MKD-HGIVPGIKHYGCV 376
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 75/169 (44%), Gaps = 5/169 (2%)
Query: 129 FWTALLNGFVKRD--YFEEALEYFRV---MQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
++ LL G+ + EA RV M GV PD T +S+L CA R G
Sbjct: 95 WYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQ 154
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
H K D+ V TL+++Y+ G AR +F +VS+N++I +
Sbjct: 155 AHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSR 214
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
GEAL F MQ K V+ L+AC+ G +E G D ++KI
Sbjct: 215 PGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHDYVRKI 263
>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
Length = 549
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 143/275 (52%), Gaps = 19/275 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLL---SGCADFP-------- 94
V W + + G EA + +M G P T ++L + CAD
Sbjct: 137 VSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGSEVHGF 196
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N+V V ++L+DMYA R D + VFD + R W ++L G + EEA
Sbjct: 197 AVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEA 256
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L FR M +GV P +T S++ VC N+ +L G +H YV + F+DNV + ++L+D+
Sbjct: 257 LGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDM 316
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G I A +F RM +VSW ++I+G+A++G EAL F M+ G K + ++F
Sbjct: 317 YCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITF 376
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEH 301
LTACSHAGL++ G +YF M Y + P +EH
Sbjct: 377 LAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEH 411
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL--TIISVLNVCANVRTLGIGLWMHRY 187
W + + +F +A+ F M+ + ++ + L CA + +G +H
Sbjct: 17 WAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSALGASLHAL 76
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGC-------------------IEFARQVFQRMHKRTL 228
+ + N L+++Y + C +E R+VF M +R +
Sbjct: 77 AIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFDEMIERDV 136
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
VSWN++++G A G EAL M + F+ D + + L
Sbjct: 137 VSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVL 178
>gi|356555244|ref|XP_003545944.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 521
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 150/285 (52%), Gaps = 24/285 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYG--TNPSHITFVTLLSGCADFPS------- 95
V WTS +S +SG +A FT M P+ T V L C+ +
Sbjct: 122 VVSWTSLVSGLAKSGFEAQALHHFTNMNAKPKIVRPNAATLVAALCACSSLGALGLGKSA 181
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
NV+ A+L++YAK G + A +FD + D WT LL G+ + Y
Sbjct: 182 HAYGLRMLIFDGNVIFDNAVLELYAKCGALKNAQNLFDKVFARDVVSWTTLLMGYARGGY 241
Query: 143 FEEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYV-PKQDFKDNVRVC 200
EEA F+ M ++ EP+ T+++VL+ A++ L +G W+H Y+ + D + +
Sbjct: 242 CEEAFAVFKRMVLNAEAEPNEATVVTVLSASASIGALSLGQWVHSYIDSRYDLVVDGNIE 301
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N L+++Y + G ++ +VF + + +SW ++I G A+NG+ + LE F+ M V +
Sbjct: 302 NALLNMYVKCGDMQMGLRVFDMIVHKDAISWGTVICGLAMNGYEKKTLELFSRMLVEVVE 361
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D+V+F G L+ACSHAGL+ +G+ +F M+ Y + PQ+ H+GC+
Sbjct: 362 PDDVTFIGVLSACSHAGLVNEGVMFFKAMRDFYGIVPQMRHYGCM 406
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
++ T L C + + L +H ++ K ++ + N+L+ Y + A +F
Sbjct: 55 NHYTFTHALRACYSHHSRSKALEIHAHLVKSGHYLDLFLQNSLLHFYLAHNDVVSASNLF 114
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM--QKGVFKTDEVSFTGALTACSHAGL 278
+ + +VSW S++ G A +GF +AL +F M + + + + + AL ACS G
Sbjct: 115 RSIPSPDVVSWTSLVSGLAKSGFEAQALHHFTNMNAKPKIVRPNAATLVAALCACSSLGA 174
Query: 279 IEDG 282
+ G
Sbjct: 175 LGLG 178
>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Brachypodium distachyon]
Length = 598
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 122/213 (57%), Gaps = 5/213 (2%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
V V +L+ +Y G + A VFD + R W ++LNGF E L FR M
Sbjct: 157 VFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREM 216
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
PD T++SVL CA + L +G +H +V K N N L+D+Y++ G +
Sbjct: 217 LEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGV 276
Query: 214 EFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+ AR++F M RT+VSW S+IVG AVNGF +AL+ F++M++ E++ G L A
Sbjct: 277 DDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYA 336
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
CSH GL++DG +YFD MK Y ++P+IEH GC+
Sbjct: 337 CSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCM 369
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD T +L CA + L G +H K V V N+L+ +Y G E A +V
Sbjct: 120 PDTHTYPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRV 179
Query: 220 FQRM--HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
F + +R LVSWNS++ GFA NG E L F M + F D + LTAC+ G
Sbjct: 180 FDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIG 239
Query: 278 LIEDGLQYFDIMKKI 292
++ G + + K+
Sbjct: 240 VLALGRRVHVFVAKV 254
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 30/229 (13%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S ++ +G E F M P T V++L+ CA+
Sbjct: 191 VSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVF 250
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEE 145
N AL+D+YAK G +D A +F M R WT+L+ G + +
Sbjct: 251 VAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMD 310
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP--KQDFKDNVRV--CN 201
AL+ F +M+ + P +T++ VL C++ + G RY K ++ R+
Sbjct: 311 ALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGF---RYFDQMKAEYGITPRIEHLG 367
Query: 202 TLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGF--VGEA 247
++D+ R G +E A M + V W +++ A++ +GEA
Sbjct: 368 CMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEA 416
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 135/218 (61%), Gaps = 6/218 (2%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P +++ STA++ YAK G ++ A +FD M R W +++G+ + + +AL F
Sbjct: 185 MPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLF 244
Query: 151 RVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
+ + G +PD +T+++ L+ C+ + L G W+H +V + NV+VC L+D+YS+
Sbjct: 245 QKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSK 304
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ--KGVFKTDEVSFT 267
G +E A VF ++ +V+WN++I G+A++G+ +AL F+ MQ G+ TD ++F
Sbjct: 305 CGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTD-ITFI 363
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L AC+HAGL+ +G+Q F+ M + Y + P+IEH+GC+
Sbjct: 364 GTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCL 401
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 38/209 (18%)
Query: 108 YAKFGRMDLATVVFDVMRGCDFW--TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
YA G++ + +F D + TA +N ++A + + S + P+ T
Sbjct: 72 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTF 131
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
S+L C+ G +H +V K + V L+D+Y++ G + A++VF RM +
Sbjct: 132 SSILKSCSTKS----GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPE 187
Query: 226 RTL-------------------------------VSWNSIIVGFAVNGFVGEALEYF-NL 253
R+L VSWN +I G++ +GF +AL F L
Sbjct: 188 RSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKL 247
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ G K DE++ AL+ACS G +E G
Sbjct: 248 LADGKPKPDEITVVAALSACSQIGALETG 276
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 151/310 (48%), Gaps = 50/310 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVS---- 101
V W S I + + E F MR +T V ++ C+ + V+ S
Sbjct: 224 VSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKY 283
Query: 102 -------------TALLDMYAKFGRMDLATVVFDVM------------------------ 124
+L+DMY + G +DLA VFD M
Sbjct: 284 IEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAA 343
Query: 125 ---------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
R WT +++G + + +AL+ F+ M + V+PD +T+ SVL+ C+++
Sbjct: 344 KKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHL 403
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
L G +H Y+ + D K +V V N L+D+Y + G ++ A +VF M K+ VSW S+I
Sbjct: 404 GLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMI 463
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV 295
+G AVNGFV E F+ M + + SF G L AC+HAGL++ GL+YF+ M+ +Y +
Sbjct: 464 LGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGL 523
Query: 296 SPQIEHHGCI 305
P+++H+GC+
Sbjct: 524 RPEMKHYGCV 533
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 111/218 (50%), Gaps = 33/218 (15%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
+ + +L+ MY FG + A VFD M D W +L+ G+ + + F+E L+ F +M+
Sbjct: 192 LFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMRE 251
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
+ V D +T++ V+ C+ + G+ M +Y+ + +V + N+L+D+Y R G ++
Sbjct: 252 ANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDL 311
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFV------------------------------- 244
AR+VF RM ++ +VSWN+++ G+A G +
Sbjct: 312 ARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQC 371
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+AL+ F M K DE++ + L+ACSH GL++ G
Sbjct: 372 SDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTG 409
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 133 LLNGFVKRDYFEEAL-EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
L+ G + + EA+ Y +M G+ D LT I + C+ V+ + G H V K
Sbjct: 127 LIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKL 186
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
F + + N+L+ +Y FG + +A++VF +M R LVSWNS+I G++ E L+ F
Sbjct: 187 GFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLF 246
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
NLM++ D V+ + ACS+ L EDG+
Sbjct: 247 NLMREANVTADSVTMVKVILACSY--LCEDGV 276
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 20/202 (9%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
I + WT IS ++ +A F M P IT ++LS C+
Sbjct: 352 IRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQT 411
Query: 95 ----------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDY 142
++V V AL+DMY K G +D A VF M+ D WT+++ G +
Sbjct: 412 VHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGF 471
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCN 201
+ E F M G++P + + I +L C + + GL + + ++
Sbjct: 472 VDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYG 531
Query: 202 TLMDVYSRFGCIEFARQVFQRM 223
++D+ SR G ++ A + ++M
Sbjct: 532 CVVDLLSRSGELDRAYEFIKQM 553
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 149/281 (53%), Gaps = 20/281 (7%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD-------- 92
T V W ++++ R G + A F M T +++ T+L G A
Sbjct: 191 TTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDT----VSWNTMLDGYAKAGEAEKAF 246
Query: 93 -----FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
P NV+ + ++ Y K G M++A V+FD M + WT +++ ++ EE
Sbjct: 247 ELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEE 306
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A F M + +E D + ++S+L CA +L +G +HR+V ++ + VCN LMD
Sbjct: 307 AGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMD 366
Query: 206 VYSRFGCIEFARQVFQ-RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
++ + GC+ A +F + ++ LVSWN II GFA++G +ALE F M++ F D V
Sbjct: 367 MFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAV 426
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ L+AC+H GL+E+G ++F M+ Y + PQIEH+GC+
Sbjct: 427 TLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCM 467
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+ + V AL+D Y+K + A VFD M D W + V++ + A F
Sbjct: 161 AEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDE 220
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M E D ++ ++L+ A + + +P + NV +T++ Y + G
Sbjct: 221 MP----EKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGR----NVVSWSTVVSAYCKKGD 272
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+E AR +F +M + LV+W ++ A G V EA F M + D ++ L A
Sbjct: 273 MEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAA 332
Query: 273 CSHAGLIEDGLQYFDIMKKIYR 294
C+ +G + G K+I+R
Sbjct: 333 CAESGSLALG-------KRIHR 347
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
H +V K ++ V N L+D YS+ + A++VF M R +VSWN+ + G V
Sbjct: 152 HAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEV 211
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
A F+ M + D VS+ L + AG E + F M
Sbjct: 212 DAARSMFDEMP----EKDTVSWNTMLDGYAKAGEAEKAFELFQRM 252
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 127/212 (59%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++V V ++L+DMYA R D + VFD + R W ++L G + +EAL FR M
Sbjct: 206 DDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRM 265
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
SG++P +T S++ C N+ +L +G +H YV + F NV + ++L+D+Y + G +
Sbjct: 266 LHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNV 325
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
AR++F R+ +VSW ++I+G A++G EAL F+ M+ G K + ++F LTAC
Sbjct: 326 SIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTAC 385
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SHAGL++ G +YF+ M Y + P +EHH +
Sbjct: 386 SHAGLVDKGWKYFNSMSDHYGIVPSLEHHAAL 417
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 16/201 (7%)
Query: 100 VSTALLDMYAKFG-------RMDLATVV-------FDVMRGCDF--WTALLNGFVKRDYF 143
+ ALL++Y K MD + VV FD M D W L+ G +
Sbjct: 95 AANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRH 154
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EAL R M G +PD T+ SVL + A + G+ +H + + F D+V V ++L
Sbjct: 155 GEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSL 214
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y+ +++ +VF + R + WNS++ G A NG V EAL F M K
Sbjct: 215 IDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMP 274
Query: 264 VSFTGALTACSHAGLIEDGLQ 284
V+F+ + AC + + G Q
Sbjct: 275 VTFSSLIPACGNLASLLLGKQ 295
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 21/215 (9%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ + W S ++ ++G + EA F RM G P +TF +L+ C + S
Sbjct: 236 VRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQ 295
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
NV +S++L+DMY K G + +A +FD ++ D WTA++ G
Sbjct: 296 LHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGP 355
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCN 201
EAL F M++ ++P+++T ++VL C++ + G + + ++
Sbjct: 356 AREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHA 415
Query: 202 TLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
L D R G +E A M K T W++++
Sbjct: 416 ALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLL 450
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 11/129 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V WT+ I H G EA + F RM L P+HITF+ +L+ C+ L+
Sbjct: 341 VSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACS---------HAGLV 391
Query: 106 DMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
D K+ + + + ++ + AL + + EEA + M+I + T+
Sbjct: 392 DKGWKY--FNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTL 449
Query: 166 ISVLNVCAN 174
+ V N
Sbjct: 450 LRACKVHKN 458
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 131/216 (60%), Gaps = 7/216 (3%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
D S N M+S Y K +D A +FD M D W+++++G+ + D F+E L
Sbjct: 306 DLISWNSMISG-----YLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLAL 360
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F+ MQ+SG +PD T++SV++ CA + L G W+H Y+ + NV + TL+D+Y +
Sbjct: 361 FQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMK 420
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
GC+E A +VF M ++ + +WN++I+G A+NG V +L+ F+ M+K +E++F G
Sbjct: 421 CGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGV 480
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L AC H GL+++G +F M +++ P ++H+GC+
Sbjct: 481 LGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCM 516
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 117/279 (41%), Gaps = 56/279 (20%)
Query: 37 NSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN 96
N S +D+ V W S ++ + G + EA + +M P
Sbjct: 137 NESSVLDS-VSWNSILAGYIEIGNVEEAKHIYHQM----------------------PER 173
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+++ S +++ ++ G + A +FD M D W+AL+ F + + +EEA+ F M
Sbjct: 174 SIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMH 233
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
GV D + +S L+ CAN+ + +G +H K + + + N L+ +YS+ G I
Sbjct: 234 KIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIM 293
Query: 215 FARQVFQRMHKRTLVSWNS-------------------------------IIVGFAVNGF 243
AR++F + L+SWNS +I G+A N
Sbjct: 294 VARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDL 353
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
E L F MQ FK DE + ++AC+ +E G
Sbjct: 354 FDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG 392
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 27/215 (12%)
Query: 35 TNNSKSTIDT-----TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG 89
+N+K+ D+ V W+S IS + ++ E F M++ G P T V+++S
Sbjct: 323 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 382
Query: 90 CADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFW 130
CA + NV++ T L+DMY K G ++ A VF M +G W
Sbjct: 383 CARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTW 442
Query: 131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
AL+ G E +L+ F M+ V P+ +T + VL C ++ + G H Y
Sbjct: 443 NALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQ-HHFYSMI 501
Query: 191 QDFK--DNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
D K NV+ ++D+ R G ++ A ++ RM
Sbjct: 502 HDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRM 536
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 8/182 (4%)
Query: 111 FGRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F +D +F+ + C W ++ +++ + A ++ M + + D T +
Sbjct: 25 FIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLL 84
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
+ C+ R+ +H +V K F +V V NTL++ +S + A +VF
Sbjct: 85 IQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDS 144
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
VSWNSI+ G+ G V EA ++ M ++ + ++ + + GL+ + + FD
Sbjct: 145 VSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSM-----IVLFGMRGLVVEACKLFD 199
Query: 288 IM 289
M
Sbjct: 200 EM 201
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 129/212 (60%), Gaps = 2/212 (0%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P N++V ++ + ++L +F M D W +++ GF + ++EAL +F
Sbjct: 254 PMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFH 313
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M+ SGV P+ LT++S L+ CA+ L G W+H YV K D + + ++L+D+YS+ G
Sbjct: 314 EMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCG 373
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
I+ A Q+F+ +R L +W SI+ G A++G +AL YF+ M++ + D+V+ G L+
Sbjct: 374 DIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLS 433
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303
AC+HAGL++ G YF M+K++ + P++EH+G
Sbjct: 434 ACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYG 465
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 39/236 (16%)
Query: 80 HITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR--GCDFWTALLNGF 137
H + V C++F VS ALL Y G + VFD MR G WT ++ +
Sbjct: 114 HASVVRTGFACSEF------VSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAY 167
Query: 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197
V + E+ALE FR M+ G+ PD + + +V++ C + LG+ MH ++ K + +
Sbjct: 168 VCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDA 227
Query: 198 RVCNTLMDVYSRFGCIEFA-------------------------------RQVFQRMHKR 226
V +TL+ Y G +++A +Q+FQ M R
Sbjct: 228 FVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDR 287
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+VSWNS+I GFA G EAL +F+ M+ + ++ L+AC+ G ++ G
Sbjct: 288 DVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTG 343
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 6/147 (4%)
Query: 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK 194
NG + RD L Y+ +G+ P+ T + +L + + + G +H V + F
Sbjct: 67 NGLITRD---PPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFA 123
Query: 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+ V L+ Y G + RQVF M + LV W II + F +ALE F M
Sbjct: 124 CSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTM 183
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIED 281
++ D V+ + ++AC GL+ D
Sbjct: 184 REVGLTPDMVAVSTVVSAC---GLLGD 207
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 150/281 (53%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W S IS + + EA F M G P+ ++ V++L C +
Sbjct: 194 VSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEF 253
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+ N + +AL+ MY K G + A +FD M+ D W A++ G+ + EEA
Sbjct: 254 VVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEA 313
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
++ F+ M++S PD +T+I +L+ CA++ L +G + Y ++ F+D+V V L+D+
Sbjct: 314 IKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDM 373
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM--QKGVFKTDEV 264
Y++ G ++ A +VF M + VSWN++I A +G EAL F M + G +++
Sbjct: 374 YAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDI 433
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L+AC HAGL+++G + F +M + + P+IEH+ C+
Sbjct: 434 TFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCM 474
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 129/240 (53%), Gaps = 20/240 (8%)
Query: 65 ALEF-TRMRLYGTNPSHITFVTLLSGCADFPS--NNVM---------------VSTALLD 106
ALEF +RM+ G P+++T+ L C++ + N M VS +L+
Sbjct: 111 ALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLIT 170
Query: 107 MYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
MYA+ G+M A VFD + D W ++++G+ K + EA+ FR M +G +P+ ++
Sbjct: 171 MYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMS 230
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
++SVL C + L +G W+ +V + N + + L+ +Y + G + AR++F M
Sbjct: 231 LVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMK 290
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
K+ V+WN++I G+A NG EA++ F M+ D+++ G L+AC+ G ++ G Q
Sbjct: 291 KKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQ 350
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 147/263 (55%), Gaps = 26/263 (9%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTALLDMY-- 108
+ MR + +P+ TF +L CA + V L+ MY
Sbjct: 215 YNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCC 274
Query: 109 ----AKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
G + A VFD ++ W+A++ G+ + A+ FR MQ++GV PD
Sbjct: 275 CCQDGSSGPVS-AKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDE 333
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
+T++SVL+ CA++ L +G W+ Y+ +++ +V +CN L+D++++ G ++ A +VF+
Sbjct: 334 ITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFRE 393
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M RT+VSW S+IVG A++G EA+ F+ M + D+V+F G L+ACSH+GL++ G
Sbjct: 394 MKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKG 453
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
YF+ M+ ++ + P+IEH+GC+
Sbjct: 454 HYYFNTMENMFSIVPKIEHYGCM 476
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 105/239 (43%), Gaps = 33/239 (13%)
Query: 31 ISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC 90
+S + +S + +V W++ I + R+G A F M++ G P IT V++LS C
Sbjct: 284 VSAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSAC 343
Query: 91 ADFPS-------------NNVMVST----ALLDMYAKFGRMDLATVVFDVM--RGCDFWT 131
AD + N+M S AL+DM+AK G +D A VF M R WT
Sbjct: 344 ADLGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWT 403
Query: 132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW-------M 184
+++ G EA+ F M GV+PD + I VL+ C++ + G + M
Sbjct: 404 SMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENM 463
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
VPK + ++D+ SR G + A + + M + V W SI+ G
Sbjct: 464 FSIVPK------IEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARG 516
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 10/175 (5%)
Query: 129 FWTALLNGFVKRDYFE-EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
+ L+ F + + + AL ++ M+ V P+ T VL CA + L +G +H
Sbjct: 193 LFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHAS 252
Query: 188 VPKQDFKDNVRVCNTLMDVY------SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN 241
+ K F+++ V NTL+ +Y G + A++VF + V+W+++I G+A
Sbjct: 253 MVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVS-AKKVFDESPVKDSVTWSAMIGGYARA 311
Query: 242 GFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG--LQYFDIMKKIYR 294
G A+ F MQ DE++ L+AC+ G +E G L+ + K I R
Sbjct: 312 GNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMR 366
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 139/263 (52%), Gaps = 21/263 (7%)
Query: 63 EAALEFTRMRLYGTNPSHITFVTLLSGCADF-------PSNNVMVSTA----------LL 105
EAA RM G P TFV+LL CA ++ V V T L+
Sbjct: 106 EAARVLARMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKTGAADHEYVLPTLI 165
Query: 106 DMYAKFGRMDLATVVFDVMRGCD---FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+MYA+ G A +F + D + A++ V+ EAL FR MQ G++P
Sbjct: 166 NMYAECGDARSARAMFGRVPNGDCVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTS 225
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
+T+ SVL+ CA + L +G W+H YV K V+V L+D+Y + G +E A VFQ
Sbjct: 226 VTVTSVLSACALLGALELGRWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDVFQG 285
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M R +W+ +IV +A + + EA+ F M+K + D V+F G L ACSH+G++ +G
Sbjct: 286 MESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYACSHSGMVSEG 345
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
LQYFD M++ Y + P I+H+GC+
Sbjct: 346 LQYFDSMRE-YGIVPGIKHYGCV 367
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 20/222 (9%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
D V + + I+ RS EA + F M+ G P+ +T ++LS CA +
Sbjct: 188 DCVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALELGRWI 247
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYF 143
+ V V+TAL+DMY K G ++ A VF M D W+ ++ + Y
Sbjct: 248 HEYVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDVFQGMESRDRQAWSVMIVAYANHSYG 307
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EA+ F M+ G+ PD +T + VL C++ + GL + + ++ +
Sbjct: 308 REAISLFEEMKKQGIRPDAVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVPGIKHYGCV 367
Query: 204 MDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV 244
D+ +R G +E A + + + T + W +++ +G V
Sbjct: 368 TDLLARSGQLEKAYKFIDELPIQPTAILWRTLLSACGSHGAV 409
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 153/287 (53%), Gaps = 27/287 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPS------- 95
V WT I+ + + EA F M G P+ IT V L CA DF +
Sbjct: 160 VAWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARSRDFDTGQWVHQH 219
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK 139
+N++++TA+L+MYAK G +A +F+ M R W +++N + +
Sbjct: 220 IRKAGYDPFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQ 279
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
+ +EAL+ F M SG+ PD T +SVL+VCA++ L +G +H Y+ K ++ +
Sbjct: 280 YERHKEALDLFFDMWTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISL 339
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-GV 258
L+D+Y++ G + A+++F + KR +V W S+I G A++G EAL F M +
Sbjct: 340 ATALLDMYAKTGGLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSS 399
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D +++ G L ACSH GL+E+ ++F +M ++Y + P EH+GC+
Sbjct: 400 LVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYSIVPGREHYGCM 446
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 28/228 (12%)
Query: 75 GTNPSHITFVTLLSGCADFPSN-----------------NVMVSTALLDMYAKFGRMDLA 117
G +P H TF +L C + +T LL MY M
Sbjct: 88 GYSPDHFTFPFVLKACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSG 147
Query: 118 TVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
VFD + + WT L+ G+V + EAL+ F+ M GVEP+ +T+++ L CA
Sbjct: 148 LKVFDNIPIWNVVAWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARS 207
Query: 176 RTLGIGLWMHRYVPKQDF-------KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
R G W+H+++ K + N+ + ++++Y++ G + AR +F +M +R +
Sbjct: 208 RDFDTGQWVHQHIRKAGYDPFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNI 267
Query: 229 VSWNSIIVGFAVNGFVGEALE-YFNLMQKGVFKTDEVSFTGALTACSH 275
VSWNS+I + EAL+ +F++ G++ D+ +F L+ C+H
Sbjct: 268 VSWNSMINAYNQYERHKEALDLFFDMWTSGIYP-DKATFLSVLSVCAH 314
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 82 TFVTLLSGCA---DFPSNNVMVSTALLD--MYAKFGRMDLATVVFDVMRGCD--FWTALL 134
T ++LL+ C + ++ + L+D + + FG ++ A +VF + W +++
Sbjct: 6 TILSLLARCKSMRELKKLRGLILSKLIDFCVDSXFGDINNADLVFRQIDAPSVYIWNSMI 65
Query: 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK 194
GFV ++ +R + +G PD+ T VL C + G +H + K F+
Sbjct: 66 RGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVLKACCAIADQDCGKCIHCCIVKSGFE 125
Query: 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+ L+ +Y ++ +VF + +V+W +I G+ N EAL+ F M
Sbjct: 126 ADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAGYVNNNQPYEALKVFKDM 185
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ +E++ AL C+ + + G
Sbjct: 186 SHCGVEPNEITMVNALIXCARSRDFDTG 213
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 145/263 (55%), Gaps = 23/263 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
V W + I+ G +A +M+ G P+ T V +L C
Sbjct: 175 VVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCL----------- 223
Query: 105 LDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+YA+ +FDVM R W+A++ G+V D +EAL+ FR+MQ+SG++PD
Sbjct: 224 --LYAR--------KIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDL 273
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T++ VL C+++ L G H Y+ + F + +CN L+D+YS+ G I FAR+VF R
Sbjct: 274 TTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNR 333
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M + +VSWN++I+G+ ++G EAL F+ + K D+++F L++CSH+GL+ +G
Sbjct: 334 MDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEG 393
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
+FD M + + + P++EH C+
Sbjct: 394 RLWFDAMSRDFSIVPRMEHCICM 416
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 119/304 (39%), Gaps = 66/304 (21%)
Query: 7 ATILRQPFLPHQQNRNQN-LKKRPQISIQTNN---SKSTID-----TTVQWTSSISRHCR 57
A + Q FL + N + + L K ++ + N ++ D + + W I +
Sbjct: 27 AKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAW 86
Query: 58 SGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMV 100
+G A + M G P+ T+ +L C+ + ++V V
Sbjct: 87 NGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFV 146
Query: 101 STALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGV 158
TAL+D YAK G + A +F M D W A++ G ++A++ MQ G+
Sbjct: 147 CTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGI 206
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
P+ TI+ VL C C+ +AR+
Sbjct: 207 CPNSSTIVGVLPTCQ--------------------------------------CLLYARK 228
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
+F M R VSW+++I G+ + + EAL+ F +MQ D + G L ACSH
Sbjct: 229 IFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAA 288
Query: 279 IEDG 282
++ G
Sbjct: 289 LQHG 292
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 57/119 (47%)
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
+ +L C ++L +H++ K + V + L +Y + AR++F +
Sbjct: 12 LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+++ WN II +A NG A++ ++ M + ++ ++ L ACS IEDG++
Sbjct: 72 PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130
>gi|125564403|gb|EAZ09783.1| hypothetical protein OsI_32071 [Oryza sativa Indica Group]
Length = 628
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 151/313 (48%), Gaps = 51/313 (16%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V W + + H RSG + F +M + G T L+ CA+ P
Sbjct: 170 SNVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTCDDATLCILVDACAELPDPSTGFAIH 229
Query: 96 --------------NNVMVS--------------------------TALLDMYAKFGRMD 115
NN ++S +L+D +A+FG ++
Sbjct: 230 KVVVQSGWNGIPEVNNSLISFYTKFSLLDCAVQIFESMKTRTTASWNSLIDAHARFGYIE 289
Query: 116 LATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF-RVMQISGVEPDYLTIISVLNVC 172
A ++F+ + WTA++ GF + EAL +F +++ ++PD T +VL+ C
Sbjct: 290 QAALLFESAPETNIISWTAMIGGFARNGLTSEALAHFVKMLTQEYIQPDDFTFGAVLHAC 349
Query: 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
A+ L G +H + F + V N L+D+Y++ G +E A VF +H++ LVSWN
Sbjct: 350 ASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANNVFDAIHQKDLVSWN 409
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
+++ GFA+NG EALE + +M DEV+FTG LTACSH+GL+E G +F+ M +
Sbjct: 410 TMLFGFAINGLPKEALEVYEIMTYHNVSPDEVTFTGLLTACSHSGLLEQGRAFFESMMSV 469
Query: 293 YRVSPQIEHHGCI 305
+ V P+ EH C+
Sbjct: 470 HGVQPKPEHLSCV 482
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 6/209 (2%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ P N + +LL + G M+LA +FD M + W LL G + ++ L
Sbjct: 134 EMPERNALSWCSLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLAL 193
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F M +SG+ D T+ +++ CA + G +H+ V + + V N+L+ Y++
Sbjct: 194 FNQMWMSGLTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTK 253
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
F ++ A Q+F+ M RT SWNS+I A G++ +A L+ + +T+ +S+T
Sbjct: 254 FSLLDCAVQIFESMKTRTTASWNSLIDAHARFGYIEQAA----LLFESAPETNIISWTAM 309
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQ 298
+ + GL + L +F M + P
Sbjct: 310 IGGFARNGLTSEALAHFVKMLTQEYIQPD 338
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 155/279 (55%), Gaps = 20/279 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLY-GTNPSHITFVTLLSGCADF--------- 93
V WT+ IS + + + + ALEF + L G P+ T+ ++L C
Sbjct: 30 NVVSWTTMISAYS-AAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACDGLFNLRQLHCC 88
Query: 94 -----PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++V V +AL+D+Y+++G ++ A VFD M D W++++ GF + +EA
Sbjct: 89 IIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEA 148
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F+ M+ +G T+ SVL C + L +G +H +V K D ++ + N L+D+
Sbjct: 149 LRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYD--QDLILNNALLDM 206
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G +E A VF RM ++ ++SW+++I G A NG+ EAL+ F M+ K + V+
Sbjct: 207 YCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTI 266
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSHAGL+E+GL YF MK+++ + P EH+GC+
Sbjct: 267 VGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCM 305
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 96/186 (51%), Gaps = 11/186 (5%)
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L++MY KFG + A VFD M R WT +++ + ++ALE+ +M GV P+
Sbjct: 6 LINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPN 65
Query: 162 YLTIISVLNVCA---NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
T SVL C N+R L H + K +V V + L+DVYSR+G +E A +
Sbjct: 66 MFTYSSVLRACDGLFNLRQL------HCCIIKIGLDSDVFVRSALIDVYSRWGELENALR 119
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF M LV W+SII GFA N EAL F M++ F + + T L AC+ L
Sbjct: 120 VFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLAL 179
Query: 279 IEDGLQ 284
+E G Q
Sbjct: 180 LELGRQ 185
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N L+++Y +FG + A+ VF +M R +VSW ++I ++ +ALE+ LM + +
Sbjct: 4 NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63
Query: 261 TDEVSFTGALTACS 274
+ +++ L AC
Sbjct: 64 PNMFTYSSVLRACD 77
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
+ W++ I+ ++G EA F M++ G P+++T V +L C S+ +V L
Sbjct: 228 VISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFAC----SHAGLVEEGL 283
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
++ +F + G + + +++ + EA++ M+ EPD +T
Sbjct: 284 YYFHS-------MKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEME---CEPDAVT 333
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195
++LN C R + + + + + + D +D
Sbjct: 334 WRALLNACRVHRNVDVAIHAAKQILRLDPQD 364
>gi|357138796|ref|XP_003570973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 472
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 129/216 (59%), Gaps = 6/216 (2%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
S+++ TAL++MY G A VFD M+ D WT +++G+V EA+E F+
Sbjct: 151 SSHLFTQTALMNMYFVCGLAAPARRVFDEMQARDVVVWTGMVSGYVDTGMHLEAVEVFQE 210
Query: 153 MQISGVE---PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
M+ G E P+ TI+SV + CA + +L W+H YV K F ++ V N LMD+Y +
Sbjct: 211 MR-RGEEVASPNVATIVSVASACAGLGSLEYAKWLHGYVEKLGFGSDLIVTNALMDMYGK 269
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G +E AR +F MH++ L SW +II G A +G V E L F+ MQK D +F
Sbjct: 270 CGGVESARALFNLMHEKDLHSWTTIISGLASHGHVKEGLALFSSMQKMGVLPDSTTFIVV 329
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSHAGL+++G+ F+ M+ Y+V+P I+H+GC+
Sbjct: 330 LSACSHAGLVDEGMCIFNSMESKYKVTPDIKHYGCM 365
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 22/200 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYG--TNPSHITFVTLLSGCADFPS-------- 95
V WT +S + +G LEA F MR +P+ T V++ S CA S
Sbjct: 186 VVWTGMVSGYVDTGMHLEAVEVFQEMRRGEEVASPNVATIVSVASACAGLGSLEYAKWLH 245
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++++V+ AL+DMY K G ++ A +F++M D WT +++G + +
Sbjct: 246 GYVEKLGFGSDLIVTNALMDMYGKCGGVESARALFNLMHEKDLHSWTTIISGLASHGHVK 305
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV-PKQDFKDNVRVCNTL 203
E L F MQ GV PD T I VL+ C++ + G+ + + K +++ +
Sbjct: 306 EGLALFSSMQKMGVLPDSTTFIVVLSACSHAGLVDEGMCIFNSMESKYKVTPDIKHYGCM 365
Query: 204 MDVYSRFGCIEFARQVFQRM 223
+D++SR G + A Q+ M
Sbjct: 366 VDLFSRAGLLSRAFQLIDSM 385
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 148/279 (53%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ I +SG EA F M+ G P+ +T+ ++L+ C+ +
Sbjct: 513 ISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQ 572
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ V+ L++MY+ G + A VFD M D + A++ G+ + +EA
Sbjct: 573 VIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEA 632
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F +Q G++PD +T I++LN CAN +L +H V K + + + N L+
Sbjct: 633 LKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVST 692
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G A VF +M KR ++SWN+II G A +G + L+ F M+ K D V+F
Sbjct: 693 YAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTF 752
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSHAGL+E+G +YF M + + ++P IEH+GC+
Sbjct: 753 VSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCM 791
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 129/264 (48%), Gaps = 21/264 (7%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLL---SGCADFP 94
K + V WT I + G E A E F +M+ G P+ IT++ +L SG A
Sbjct: 304 KMETKSVVSWTIIIGGYADCGHS-EIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALK 362
Query: 95 --------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFV 138
+++ V TAL+ MYAK G VF+ + D W ++ G
Sbjct: 363 WGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 422
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ +EEA E + MQ G+ P+ +T + +LN C N L G +H V K F ++
Sbjct: 423 EGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDIS 482
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V N L+ +Y+R G I+ AR +F +M ++ ++SW ++I G A +G EAL F MQ+
Sbjct: 483 VQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAG 542
Query: 259 FKTDEVSFTGALTACSHAGLIEDG 282
K + V++T L ACS ++ G
Sbjct: 543 LKPNRVTYTSILNACSSPAALDWG 566
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 143/296 (48%), Gaps = 36/296 (12%)
Query: 24 NLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITF 83
++++ Q+ + N+++ T+ + W + + + + G I EA M+ +G T
Sbjct: 191 SIEEARQVWNKLNHTERTVHS---WNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATT 247
Query: 84 VTLLSGCADFPSN------------------NVMVSTALLDMYAKFGRMDLATVVFDVM- 124
+ LLS C PS +V V+ +L+MYAK G + A VFD M
Sbjct: 248 MRLLSSCKS-PSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKME 306
Query: 125 -RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
+ WT ++ G+ + E A E F+ MQ GV P+ +T I+VLN + L G
Sbjct: 307 TKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKT 366
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H ++ + ++ V L+ +Y++ G + RQVF+++ R L++WN++I G A G
Sbjct: 367 VHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGN 426
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACS-----------HAGLIEDGLQYFDI 288
EA E ++ MQ+ +++++ L AC H+ +++DG FDI
Sbjct: 427 WEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFM-FDI 481
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 95/184 (51%), Gaps = 4/184 (2%)
Query: 103 ALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
AL++MY + G ++ A V++ + R W A++ G+V+ Y EEAL+ R MQ G+
Sbjct: 181 ALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGL 240
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
T + +L+ C + L G +H K +V V N ++++Y++ G I AR+
Sbjct: 241 ALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEARE 300
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF +M +++VSW II G+A G A E F MQ+ + +++ L A S
Sbjct: 301 VFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAA 360
Query: 279 IEDG 282
++ G
Sbjct: 361 LKWG 364
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 146/280 (52%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV------ 98
V W + I+ ++G E F M P T+ ++L CA + N
Sbjct: 449 AVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHT 508
Query: 99 -----------MVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEE 145
V AL+DMY K G ++ A + D + W A+++GF E+
Sbjct: 509 RIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSED 568
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A ++F M GV PD T +VL+ CAN+ T+G+G +H + KQ+ + +V +C+TL+D
Sbjct: 569 AHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVD 628
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ G ++ ++ +F++ R V+WN+++ G+A +G EAL+ F MQ K + +
Sbjct: 629 MYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHAT 688
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L AC+H GL++ GL YFD+M Y + PQ EH+ C+
Sbjct: 689 FVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCM 728
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 119/258 (46%), Gaps = 19/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W++ I+ ++ +E F M+ G S + +L CA +
Sbjct: 248 VSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSH 307
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++++V TA LDMYAK GRM A V M C + A++ G+ + D +A
Sbjct: 308 ALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQA 367
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F+++ +G+ D +T+ LN CA++R G +H K N+ V N ++D+
Sbjct: 368 LKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDM 427
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + + A +F M +R VSWN+II NG E L +F M + D+ ++
Sbjct: 428 YGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTY 487
Query: 267 TGALTACSHAGLIEDGLQ 284
L AC+ + G++
Sbjct: 488 GSVLKACAGRQALNTGME 505
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 19/248 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN-------- 97
V W S IS ++G ++ F M G + +L C +
Sbjct: 147 VSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGL 206
Query: 98 ---------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
V+ +ALL MYAK R+D + VF + ++ W+A++ G V+ D E
Sbjct: 207 VVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEG 266
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F+ MQ GV S+ CA + L +G +H + K F ++ V +D+
Sbjct: 267 LELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDM 326
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G + A++V M K +L S+N+IIVG+A + +AL+ F L+ K DE++
Sbjct: 327 YAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITL 386
Query: 267 TGALTACS 274
+GAL AC+
Sbjct: 387 SGALNACA 394
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 33/189 (17%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM---------------------------------RG 126
VS L+ MY K +D A VFD M R
Sbjct: 86 VSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERD 145
Query: 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186
W ++++GF++ ++++ F M GV D ++ VL C + +G+ +H
Sbjct: 146 VVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHG 205
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
V K F +V + L+ +Y++ ++ + VF + ++ VSW+++I G N E
Sbjct: 206 LVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVE 265
Query: 247 ALEYFNLMQ 255
LE F MQ
Sbjct: 266 GLELFKEMQ 274
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N+++ Y+ G ++ AR+ F M +R +VSWNS+I GF NG ++++ F M +
Sbjct: 119 NSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVG 178
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
D S L AC + G+Q ++ K
Sbjct: 179 FDRASLAVVLKACGALEECDMGVQVHGLVVK 209
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T + C+ +L G H + F+ V N LM +Y + +++A +VF +M
Sbjct: 51 TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKM 110
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+ R +VS+NSII G+A G + A ++F M
Sbjct: 111 YLRDVVSYNSIISGYASCGEMDIARKFFYEM 141
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 135/216 (62%), Gaps = 2/216 (0%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDV--MRGCDFWTALLNGFVKRDYFEEALEY 149
+ P + + T ++ YA G +D A +FD+ ++ W A+++G+V+ + F+E L
Sbjct: 165 EMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHM 224
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
FR+MQ++ VEPD I+++L+ CA++ L G+W+HRY+ + +RV L+D+Y++
Sbjct: 225 FRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAK 284
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G ++ A+ +F M +R V WN++I G A++G A++ F M+K K D ++F
Sbjct: 285 CGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAV 344
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACS++G++++G++ ++ M ++++ P+ EH+GC+
Sbjct: 345 WXACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCV 380
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 109/239 (45%), Gaps = 37/239 (15%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN-- 97
+T+ T W + IS + ++ C E F M+L P VT+LS CA + +
Sbjct: 197 ATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTG 256
Query: 98 ---------------VMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKR 140
+ VST L+DMYAK G +DLA +F+ M D W A+++G
Sbjct: 257 IWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMD 316
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL--GIGLW-----MHRYVPKQDF 193
E A++ F M+ +G++PD +T I+V C+N + GI +W +H+ PK +
Sbjct: 317 GDGEGAIKLFMEMEKAGIKPDNITFIAVWXACSNSGMVDEGIRIWNRMSTVHKIEPKSEH 376
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----RTLVSWNSIIVGFAVNGFVGEA 247
V +D+ SR G E A V QR+ K V+W + + +G +A
Sbjct: 377 YGCV------IDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQA 429
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 32/188 (17%)
Query: 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186
C F T ++ + R F A+ F + +G+ PD T+ VL A + + +G +H
Sbjct: 71 CIFNT-MIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHA 129
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA------- 239
K N V N+L+ +Y F + ARQVF M + + VSW +I G+A
Sbjct: 130 CTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDT 189
Query: 240 -------------------VNGFV-----GEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
++G+V E L F LMQ + DE L+AC+H
Sbjct: 190 ARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAH 249
Query: 276 AGLIEDGL 283
G ++ G+
Sbjct: 250 MGALDTGI 257
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 150/265 (56%), Gaps = 23/265 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + I+ + +SG EA + F M P+ T +++LS CA S
Sbjct: 222 VSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLSVLSACAQSGSLKMGNWVSSW 281
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+N+ V AL+DMYAK G ++ A +F+ ++ + W ++ G+ ++EA
Sbjct: 282 IEEHGLESNIKVMNALIDMYAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEA 341
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVCNTLM 204
L FR M S VEP+ +T++S+L CAN+ LG+G W+H Y+ K ++ +N + +L+
Sbjct: 342 LGLFRQMLQSNVEPNDVTLLSILPACANLGALGLGKWIHAYIDKNMKNLANNA-LWTSLI 400
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G IE A Q+F M+ ++L SWN++I GFA++G A+ F+ M K D +
Sbjct: 401 DMYAKCGNIEVANQIFDGMNPKSLASWNAMISGFAMHGQADLAISLFSRMTKEGLVPDNI 460
Query: 265 SFTGALTACSHAGLIEDG-LQYFDI 288
+F G L+AC+HAGL++ G + +F I
Sbjct: 461 TFIGVLSACNHAGLLDLGHINHFHI 485
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 105/188 (55%), Gaps = 2/188 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V+ TAL+ YA G +D A +FD + R W A++ G+ + FEEAL +F M
Sbjct: 189 DVVSYTALITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEML 248
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ V P+ T++SVL+ CA +L +G W+ ++ + + N++V N L+D+Y++ G +E
Sbjct: 249 RANVTPNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLE 308
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +F+ + + ++SWN +I G+ EAL F M + + ++V+ L AC+
Sbjct: 309 NALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTLLSILPACA 368
Query: 275 HAGLIEDG 282
+ G + G
Sbjct: 369 NLGALGLG 376
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 96/194 (49%), Gaps = 7/194 (3%)
Query: 109 AKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
+ +G + A ++F + + W ++ G + A++Y+ M SG P+ T
Sbjct: 69 SPYGDLSYALLLFKSIGKPNQIIWNNIIRGLSLSESPILAIQYYVDMISSGFTPNTYTYP 128
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
VL CA + + G +H + K F ++ V +L+ +Y + G + AR VF+R R
Sbjct: 129 FVLKSCARISSTHEGKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLVFERSSMR 188
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
+VS+ ++I G+A GF+ +ALE F+ + D VS+ + + +G E+ L +F
Sbjct: 189 DVVSYTALITGYASRGFLDQALELFD----EIPVRDVVSWNAMIAGYTQSGRFEEALIFF 244
Query: 287 DIMKKIYRVSPQIE 300
+ M + V+P +
Sbjct: 245 EEMLRA-NVTPNMS 257
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD--VYSRFGCIEFARQVFQRM 223
+++L+ C N++TL +H V K + + L++ V S +G + +A +F+ +
Sbjct: 28 LTLLSTCKNLKTLK---QIHSQVIKTGLHNTHFALSKLIEFCVISPYGDLSYALLLFKSI 84
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
K + WN+II G +++ A++Y+ M F + ++ L +C+ +G
Sbjct: 85 GKPNQIIWNNIIRGLSLSESPILAIQYYVDMISSGFTPNTYTYPFVLKSCARISSTHEGK 144
Query: 284 Q 284
Q
Sbjct: 145 Q 145
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 155/277 (55%), Gaps = 12/277 (4%)
Query: 33 IQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGT--NPSHITFVTLLSGC 90
++ K ++D +Q I RH G + ++ + + +Y T + ++V C
Sbjct: 120 VKACTQKGSLDMGIQAHGQIIRH---GFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISC 176
Query: 91 ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
D S MV+ Y K G + A +FD M + W+ +++G+ K +F++A+E
Sbjct: 177 LDVVSWTSMVAG-----YIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIE 231
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
+ ++Q GV + ++SV+ CA++ L +G H Y+ + N+ + L+D+Y+
Sbjct: 232 LYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYA 291
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
R G I+ A VF ++ R +SW ++I GFA++G+ +ALEYF+ M+K E++FT
Sbjct: 292 RCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTA 351
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH GL+E GL+ F+ MK+ YR+ P++EH+GC+
Sbjct: 352 VLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCM 388
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 33/224 (14%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+V ++ L+ + +D A VF ++ + + + + GF +++ ++ +
Sbjct: 46 DVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSK 105
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+G+ PD LT ++ C +L +G+ H + + F +V V N+L+ +YS G I+
Sbjct: 106 RNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIK 165
Query: 215 FARQVFQRMHKRTLVSWNSIIV-------------------------------GFAVNGF 243
A VF+R+ +VSW S++ G+A N F
Sbjct: 166 SASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSF 225
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
+A+E + L+Q +E + +C+H G +E G + D
Sbjct: 226 FDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHD 269
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 133/232 (57%), Gaps = 7/232 (3%)
Query: 80 HITFVTLLSGCADFPSNNVMVS-TALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNG 136
++ FV D+ N M S +L YA+ G+MD A +FD M D WT +++G
Sbjct: 149 NLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISG 208
Query: 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
++ YF EAL+ F M G+ P+ T+ S L CAN+ L G WMH Y+ K + + N
Sbjct: 209 CLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMN 268
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQ---RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
R+ L+D+Y++ G +EFA ++F R+ KR + WN++I GFAV+G EA+E F
Sbjct: 269 ERLLAGLIDMYAKCGELEFASKLFNSNPRL-KRKVWPWNAMIGGFAVHGKSKEAIEVFEQ 327
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
M+ ++V+F L ACSH +E+G YF+ M YRV P++EH+GC+
Sbjct: 328 MKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCL 379
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 23/213 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF------------ 93
V WT+ IS + G +EA F M G +P+ T + L+ CA+
Sbjct: 200 VSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVY 259
Query: 94 -PSNNVMVS----TALLDMYAKFGRMDLATVVFD----VMRGCDFWTALLNGFVKRDYFE 144
NN+ ++ L+DMYAK G ++ A+ +F+ + R W A++ GF +
Sbjct: 260 IKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSK 319
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTL 203
EA+E F M+I V P+ +T +++LN C++ + G + + K + L
Sbjct: 320 EAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCL 379
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVS-WNSII 235
+D+ R G ++ A ++ MH V+ W +++
Sbjct: 380 VDLLGRAGRLKEAEEIISSMHLTPDVAIWGALL 412
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
K ++N+ V N L+ +Y + AR+VF R + SWN ++ G+A G + EA +
Sbjct: 130 KLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQ 189
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
F+ M + D VS+T ++ C G + L F M
Sbjct: 190 LFDEMP----EKDVVSWTTMISGCLQVGYFMEALDIFHNM 225
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 118/192 (61%), Gaps = 3/192 (1%)
Query: 117 ATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A VF++M D W +++NGF EAL ++ M GVEPD T++S+L+ CA
Sbjct: 60 AYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAE 119
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNS 233
+ TL +G H Y+ K N+ N L+D+Y++ G I AR++F M +R +VSW S
Sbjct: 120 LATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTS 179
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
+IVG AVNGF EALE+F M++ E++F G L ACSH G++ +G +YF MK+ Y
Sbjct: 180 LIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQY 239
Query: 294 RVSPQIEHHGCI 305
+ P+IEH+GC+
Sbjct: 240 DIVPRIEHYGCM 251
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 22/222 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I+ +G EA + RM G P T V+LLS CA+ +
Sbjct: 73 VAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVY 132
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEE 145
N+ + ALLD+YAK G + A +FD M R WT+L+ G + +E
Sbjct: 133 MVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKE 192
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLM 204
ALE+F+ M+ G+ P +T + VL C++ + G + R + D + ++
Sbjct: 193 ALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMV 252
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVG 245
D+ R G ++ A Q M + V W +++ ++G +G
Sbjct: 253 DLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLG 294
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
KD V + +T++ Y E A +VF+ M ++ +V+WNS+I GFA+NG EAL +
Sbjct: 44 KDTVTL-DTMITAY-----FESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKR 97
Query: 254 MQKGVFKTDEVSFTGALTACS 274
M + D + L+AC+
Sbjct: 98 MGSEGVEPDGFTMVSLLSACA 118
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 149/263 (56%), Gaps = 21/263 (7%)
Query: 63 EAALEFTRMRLYG-TNPSHITFVTLLSGCADFPS--------NNVM---------VSTAL 104
E + F +M G NP+ T +L C+ + NV+ V TAL
Sbjct: 143 EPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETAL 202
Query: 105 LDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
++ YAK + LA+ VFD + R W+ +++G+ + EAL FR MQ +GV PD
Sbjct: 203 VNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDE 262
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
+T++SV++ CA L G W+H Y+ KQ + ++ + L+++Y++ GCIE A++VF
Sbjct: 263 VTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDA 322
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M + +W+S+IVG A+NG +ALE F M++ K + V+F G L+AC+H+GL+ +G
Sbjct: 323 MPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEG 382
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
+Y+ M + + + P +E +GC+
Sbjct: 383 RRYWSSMLE-FGIVPSMELYGCM 404
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Query: 109 AKFGRMDLATVVFDVMRGCDF--WTALLNGFVK-RDYFEEALEYFRVMQISGV-EPDYLT 164
+ +G +D A +F ++ + W +++ G + + +E + FR M G P+ T
Sbjct: 104 SPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFT 163
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
+ VL C+ V L G +H V K F + V L++ Y++ I A +VF +
Sbjct: 164 MAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEIT 223
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
R LV+W+++I G+A G V EAL F MQK DEV+ ++AC+ +G ++ G
Sbjct: 224 DRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG 281
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE--ALEYFNLMQKGVFKTDEVS 265
S +G I++AR++F ++ + + SWNS+I G + + + + + ++++G + +
Sbjct: 104 SPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFT 163
Query: 266 FTGALTACSHAGLIEDGLQ-YFDIMKKIYRVSPQIE 300
L ACS +E+G Q + +++K + SP +E
Sbjct: 164 MAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVE 199
>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
Length = 852
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 153/288 (53%), Gaps = 20/288 (6%)
Query: 37 NSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS- 95
+S ID + ++ IS + +G EA F + G P+ + ++L CA +
Sbjct: 407 DSSKAIDVVIG-STMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAM 465
Query: 96 ----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGF 137
V +AL+DMYAK GR+DL+ +F + D W ++++ F
Sbjct: 466 KLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSF 525
Query: 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197
+ EEAL FR M + GV+ +TI SVL+ CA++ + G +H V K + ++
Sbjct: 526 AQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADL 585
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
+ L+D+Y + G +E+A +VF+ M ++ VSWNSII + G V E++ MQ+
Sbjct: 586 FAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEE 645
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
FK D V+F ++AC+HAG +++GL+ F M + Y+++P++EH C+
Sbjct: 646 GFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACM 693
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 124/267 (46%), Gaps = 23/267 (8%)
Query: 28 RPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNP---SHITFV 84
R +++ ++ + + W I +G A L + +M + + P SH TF
Sbjct: 92 RDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSH-TFP 150
Query: 85 TLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--R 125
++ CA + ++ V +AL+ MYA G + A VFD M R
Sbjct: 151 YVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAER 210
Query: 126 GCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185
C W +++G+VK A+E F M+ SG EP++ T+ L+V A L G+ +H
Sbjct: 211 DCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLH 270
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
K + V V NTL+ +Y++ C++ ++F M + LV+WN +I G NGFV
Sbjct: 271 TLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVD 330
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTA 272
+AL F MQK + D V+ L A
Sbjct: 331 QALLLFCDMQKSGIRPDSVTLVSLLPA 357
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 115/256 (44%), Gaps = 19/256 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + + ++G + A F MR G P+ T LS A
Sbjct: 213 VLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTL 272
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ V V+ L+ MYAK +D +F +M D W +++G V+ + ++A
Sbjct: 273 AVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQA 332
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F MQ SG+ PD +T++S+L ++ G +H Y+ + +V + + L+D+
Sbjct: 333 LLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDI 392
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + + A+ V+ +V +++I G+ +NG EA++ F + + + + V+
Sbjct: 393 YFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAI 452
Query: 267 TGALTACSHAGLIEDG 282
L AC+ ++ G
Sbjct: 453 ASVLPACASMAAMKLG 468
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 10/190 (5%)
Query: 76 TNPSHITFVTLLSG---CADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM-RG---CD 128
+PSH++ + G A + + + T L+ MY R A VF + RG C
Sbjct: 50 VSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACA 109
Query: 129 F-WTALLNGFVKRDYFEEALEYFRVM--QISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185
W L+ G + AL ++ M S PD T V+ CA + + +G +H
Sbjct: 110 LPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVH 169
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
R ++ V + L+ +Y+ G + ARQVF M +R V WN ++ G+ G V
Sbjct: 170 RTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVS 229
Query: 246 EALEYFNLMQ 255
A+E F M+
Sbjct: 230 SAVELFGDMR 239
>gi|125606358|gb|EAZ45394.1| hypothetical protein OsJ_30043 [Oryza sativa Japonica Group]
Length = 494
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 151/313 (48%), Gaps = 51/313 (16%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V W + + H RSG + F +M + G T L+ CA+ P
Sbjct: 36 SNVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTCDDATLCILVDACAELPDPSTGFAIH 95
Query: 96 --------------NNVMVS--------------------------TALLDMYAKFGRMD 115
NN ++S +L+D +A+FG ++
Sbjct: 96 KVVVQSGWNGIPEVNNSLISFYTKFSLLDCAVQIFESMKTRTTASWNSLIDAHARFGYIE 155
Query: 116 LATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF-RVMQISGVEPDYLTIISVLNVC 172
A ++F+ + WTA++ GF + EAL +F +++ ++PD T +VL+ C
Sbjct: 156 QAALLFESAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEYIQPDDFTFGAVLHAC 215
Query: 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
A+ L G +H + F + V N L+D+Y++ G +E A VF +H++ LVSWN
Sbjct: 216 ASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANNVFDAIHQKDLVSWN 275
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
+++ GFA+NG EALE + +M DEV+FTG LTACSH+GL+E G +F+ M +
Sbjct: 276 TMLFGFAINGLPKEALEVYEIMTYHNVSPDEVTFTGLLTACSHSGLLEQGRAFFESMMSV 335
Query: 293 YRVSPQIEHHGCI 305
+ V P+ EH C+
Sbjct: 336 HGVQPKPEHLSCV 348
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 6/206 (2%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFR 151
P N + +LL + G M+LA +FD M + W LL G + ++ L F
Sbjct: 2 PERNALSWCSLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFN 61
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M +SG+ D T+ +++ CA + G +H+ V + + V N+L+ Y++F
Sbjct: 62 QMWMSGLTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTKFS 121
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ A Q+F+ M RT SWNS+I A G++ +A L+ + +T+ +S+T +
Sbjct: 122 LLDCAVQIFESMKTRTTASWNSLIDAHARFGYIEQAA----LLFESAPETNIISWTAMIG 177
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSP 297
+ L + L +F M + P
Sbjct: 178 GFARNSLTSEALAHFVKMLTQEYIQP 203
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 153/287 (53%), Gaps = 20/287 (6%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS-----GCADF 93
+S TV WT+ I+ + ++ C EA F +MRL + +T ++L G ADF
Sbjct: 167 ESPFQDTVAWTALINGYVKNDCPGEALKCFVKMRLRDRSVDAVTVASILRAAALVGDADF 226
Query: 94 ---------PSNNVM----VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFV 138
+ V V +AL+DMY K G + A VF+ + R WT L+ G+V
Sbjct: 227 GRWVHGFYVEAGRVQLDGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYV 286
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ + F++AL F M V P+ T+ SVL+ CA + L G +H+Y+ NV
Sbjct: 287 QSNKFQDALRAFWDMLSDNVAPNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMNVT 346
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
+ L+D+Y++ G I+ A +VF+ M + + +W II G AV+G AL F M K
Sbjct: 347 LGTALVDMYAKCGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSG 406
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ +EV+F G L ACSH G +E+G + F++MK Y + P+++H+GC+
Sbjct: 407 IQPNEVTFVGVLAACSHGGFVEEGKRLFELMKHAYHLKPEMDHYGCM 453
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 22/207 (10%)
Query: 73 LYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTA 132
LY T ++ F+T L C F N +T LL ++FD + + T
Sbjct: 36 LYSTQDNNTLFLTKLLQCVPFSQNQ---NTCLL-------------LLFDTINTPN--TR 77
Query: 133 LLNGFVKR-DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-HRYVPK 190
LLN + + +L + ++ GV+PD T +L + +++ +M + + K
Sbjct: 78 LLNKMIAACSHPHISLLCYAKLRQKGVQPDKHTFPLLLKTFS--KSIAQNPFMIYAQIFK 135
Query: 191 QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 250
F ++ + N L+ ++ G +E ARQVF + V+W ++I G+ N GEAL+
Sbjct: 136 LGFDLDLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWTALINGYVKNDCPGEALKC 195
Query: 251 FNLMQKGVFKTDEVSFTGALTACSHAG 277
F M+ D V+ L A + G
Sbjct: 196 FVKMRLRDRSVDAVTVASILRAAALVG 222
>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 608
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 148/279 (53%), Gaps = 26/279 (9%)
Query: 48 WTSSISRHCRSGCILEA-ALEFTRMRLYGTNPSHITFVTLLSGCADFP------------ 94
WT+ +S ++ EA L + R G P TF T+L+ C +
Sbjct: 231 WTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKL 290
Query: 95 -----SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEAL 147
+NV+V ++LLDMY K G + A VF+ M + W+ALL G+ + E+A+
Sbjct: 291 ITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAI 350
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH-RYVPKQDFKDNVRVCNTLMDV 206
E FR M+ E D +VL CA + + +G +H +YV + F NV V + L+D+
Sbjct: 351 EMFREME----EKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCF-GNVIVESALIDL 405
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + GCI++A +V+ +M R +++WN+++ A NG EA+ +FN M K K D +SF
Sbjct: 406 YGKSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISF 465
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTAC H GL+E+G YF +M K Y + P EH+ C+
Sbjct: 466 IAVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCM 504
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 4/189 (2%)
Query: 100 VSTALLDMYAKFG-RMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQIS 156
V +LL +Y K G M VFD M + WT++++G+V +ALE F M
Sbjct: 97 VGNSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSF 156
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
G++P+ T+ S + C + + +G H V F+ N + +TL +Y A
Sbjct: 157 GLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDA 216
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEVSFTGALTACSH 275
R+VF M + ++ W +++ F+ N EAL F M +G D +F LTAC +
Sbjct: 217 RRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGN 276
Query: 276 AGLIEDGLQ 284
++ G +
Sbjct: 277 LRRLKQGKE 285
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 154/283 (54%), Gaps = 21/283 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
V WT+ IS + + G EA F +M T P+ TF T+LS C F
Sbjct: 75 NVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIH 134
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
N++ V ++LLDMYAK GR+ A VF+ + D TA+++G+ + E
Sbjct: 135 SHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 194
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EALE F +Q G+ +Y+T S+L + + L G +H +V + + V + N+L+
Sbjct: 195 EALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLI 254
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDE 263
D+YS+ G + +AR++F M RT++SWN+++VG++ +G E ++ F LM ++ K D
Sbjct: 255 DMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDS 314
Query: 264 VSFTGALTACSHAGLIEDGLQYFD-IMKKIYRVSPQIEHHGCI 305
V+F L+ CSH GL + GL+ FD +M + IEH+GC+
Sbjct: 315 VTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCV 357
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 108/189 (57%), Gaps = 2/189 (1%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
V +ST L+ +Y K + A VFD MR + WTA+++G+ +R + EAL F M
Sbjct: 45 VYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLR 104
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
S EP+ T +VL+ C +G +H ++ K+++++++ V ++L+D+Y++ G I
Sbjct: 105 SDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHE 164
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
AR VF+ + +R +VS +II G+A G EALE F +Q+ ++ V++ LTA S
Sbjct: 165 ARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSG 224
Query: 276 AGLIEDGLQ 284
++ G Q
Sbjct: 225 LAALDHGKQ 233
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M I G E + +LN C N R + G +H ++ K + V + L+ +Y++ C
Sbjct: 1 MAIQGPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC 60
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+ AR VF M +R +VSW ++I G++ GF EAL F M + + +E +F L++
Sbjct: 61 LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSS 120
Query: 273 CSHAGLIEDGLQ-YFDIMKKIYR 294
C+ E G Q + I K+ Y
Sbjct: 121 CTGFSGFELGRQIHSHIFKRNYE 143
>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 127/210 (60%), Gaps = 3/210 (1%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQIS 156
+V +AL+ MY K G M A VFD + D W AL+ G+ + +EA+ F M+ +
Sbjct: 269 LVGSALVGMYEKCGEMAEARRVFDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSMRQA 328
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
G PD +T++ VL+ CA V L +G + RY ++ F NV V L+D+YS+ G + A
Sbjct: 329 GARPDKITLVGVLSACAAVGALELGTELDRYALQRGFYSNVYVGTALVDMYSKCGDLTRA 388
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEVSFTGALTACSH 275
QVF+++ + SWN++I G A NG EA+ F LM+K + D+++F G L+AC H
Sbjct: 389 IQVFEKLPCKNEASWNALICGLAFNGRGQEAIRQFELMRKQEGLRPDDITFIGVLSACVH 448
Query: 276 AGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
AGL++DG ++FD + +++ P+IEH+ C+
Sbjct: 449 AGLLKDGRRWFDSLTSEFQIIPKIEHYSCM 478
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 96/185 (51%), Gaps = 3/185 (1%)
Query: 103 ALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISG-VE 159
+L+ MY+ GR A VFD + R W +++ + ++A FR M G V
Sbjct: 171 SLVTMYSNLGRPRAARRVFDGILRRDVVSWNSMIKAYQAAGMKDDAARMFRAMVAEGAVP 230
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
P+ +T+ VL C + L +G W+ +V + V + L+ +Y + G + AR+V
Sbjct: 231 PNAVTVAVVLAACRDAGDLALGRWLEEWVKSVGMEVGSLVGSALVGMYEKCGEMAEARRV 290
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F + + V+WN++I G+A NG EA+ F+ M++ + D+++ G L+AC+ G +
Sbjct: 291 FDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSMRQAGARPDKITLVGVLSACAAVGAL 350
Query: 280 EDGLQ 284
E G +
Sbjct: 351 ELGTE 355
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M + + PD T+ +L A H + K ++ ++L+ +YS G
Sbjct: 122 MLRAALRPDAYTLPFLLLAAARCPAPAFAASAHALLQKLGLHNHDHTVHSLVTMYSNLGR 181
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALT 271
AR+VF + +R +VSWNS+I + G +A F M +G + V+ L
Sbjct: 182 PRAARRVFDGILRRDVVSWNSMIKAYQAAGMKDDAARMFRAMVAEGAVPPNAVTVAVVLA 241
Query: 272 ACSHAG 277
AC AG
Sbjct: 242 ACRDAG 247
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 151/282 (53%), Gaps = 22/282 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRL-YGTNPSHITFVTLLSGCADFPS--------- 95
V W S +S + + G EA F R+R G P ++ V++L C +
Sbjct: 184 VSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEG 243
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N + +AL+ MY+K G + + +FD M DF W A ++ + + +E
Sbjct: 244 FVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADE 303
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F M+ +GV+P+ +T+ +VL+ CA++ L +G M Y + + ++ V L+D
Sbjct: 304 AISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALID 363
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM--QKGVFKTDE 263
+Y++ G +E A++VF M ++ SWN++I A +G EAL F M + G + ++
Sbjct: 364 MYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPND 423
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++F L+AC HAGL+++G + FD+M ++ + P+IEH+ C+
Sbjct: 424 ITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCM 465
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAK 110
+ +M+ +P++ TF + CA+ N+ +++ MY +
Sbjct: 105 YHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFR 164
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF-RVMQISGVEPDYLTIIS 167
G +A VFD + D W +LL+G+ K + EA+E F R+ + SG EPD ++++S
Sbjct: 165 CGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVS 224
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
VL C + L +G W+ +V ++ K N + + L+ +YS+ G + +R++F M R
Sbjct: 225 VLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRD 284
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
++WN+ I +A NG EA+ F+ M++ ++V+ T L+AC+ G ++ G Q
Sbjct: 285 FITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQ 341
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L + M+ + P+ T V CAN+ + + H V K ++ N+++ +
Sbjct: 102 LHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTM 161
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVS 265
Y R G AR+VF + ++ LVSWNS++ G+A GF EA+E F L ++ F+ DE+S
Sbjct: 162 YFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMS 221
Query: 266 FTGALTACSHAGLIEDG 282
L AC G +E G
Sbjct: 222 LVSVLGACGELGDLELG 238
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 142/279 (50%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WTS I+ + + C +A F M+ G P +I + +SGCA
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHAR 471
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
S +V + AL+++YA+ GR+ A F+ + D W L++GF + EEA
Sbjct: 472 IYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEA 531
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F M SGV+ + T +S L+ AN+ + G +H V K V N L+ +
Sbjct: 532 LKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISL 591
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G E A+ F M +R VSWN+II + +G EAL+ F+ M+K K ++V+F
Sbjct: 592 YGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTF 651
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSH GL+E+GL YF M Y + P+ +H+ C+
Sbjct: 652 IGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACV 690
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 132/269 (49%), Gaps = 24/269 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
TV + + IS H + G E ALE F M+ G +P +T +LL+ CA
Sbjct: 209 TVTFNTLISGHAQCG-HGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLH 267
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFE 144
S++ ++ +LLD+Y K G ++ A V+F+ + W +L F + +
Sbjct: 268 SYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLA 327
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
++ E F MQ +G+ P+ T +L C R + +G +H K F+ ++ V L+
Sbjct: 328 KSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLI 387
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+YS++G +E AR+V + + ++ +VSW S+I G+ + +AL F MQK D +
Sbjct: 388 DMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNI 447
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIY 293
A++ C+ + GLQ I +IY
Sbjct: 448 GLASAISGCAGINAMRQGLQ---IHARIY 473
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 2/188 (1%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQIS 156
+V L+D+Y+K G + A VF+ + D W A+L+G+ + EEAL +R M +
Sbjct: 78 IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
GV P + SVL+ C G +H K F + V N ++ +Y R G A
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLA 197
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
+VF M R V++N++I G A G ALE F MQ D V+ + L AC+
Sbjct: 198 ERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASL 257
Query: 277 GLIEDGLQ 284
G ++ G Q
Sbjct: 258 GDLQKGTQ 265
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 117/258 (45%), Gaps = 19/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + +S + ++G EA + +M G P+ ++LS C
Sbjct: 109 VSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQ 168
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVKRDYFEEA 146
+ + V A++ +Y + G LA VF M D T L++G + + E A
Sbjct: 169 GYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHA 228
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F MQ SG+ PD +TI S+L CA++ L G +H Y+ K + + +L+D+
Sbjct: 229 LEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDL 288
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G +E A +F + +V WN ++V F + ++ E F MQ + ++ ++
Sbjct: 289 YVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTY 348
Query: 267 TGALTACSHAGLIEDGLQ 284
L C+ I+ G Q
Sbjct: 349 PCILRTCTCTREIDLGEQ 366
>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 153/291 (52%), Gaps = 31/291 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ W++ I+ + + G EA F +M+LYG P+ +T +LLSGCA +
Sbjct: 336 ITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAY 395
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGF 137
++++V L+DMYAK +A +FD + G D WT ++ G+
Sbjct: 396 VIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGY 455
Query: 138 VKRDYFEEALEYFRVM--QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195
+ +AL+ F + Q + ++P+ T+ L CA + L +G +H Y + + +
Sbjct: 456 AQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENES 515
Query: 196 NV-RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
V V N L+D+YS+ G I+ AR VF M R +VSW S++ G+ ++G EAL F+ M
Sbjct: 516 EVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQM 575
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
QK F D ++F L ACSH+G+++ G+ YF M K + ++P EH+ C+
Sbjct: 576 QKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACM 626
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 134/283 (47%), Gaps = 30/283 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T W + I R + G + + + +M+ G P H TF +L C + PS
Sbjct: 91 TVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVH 150
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFD-----VMRGCDFWTALLNGFVKRD 141
+NV + +++ MY + G +D A +FD + W ++L +V+
Sbjct: 151 AIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGG 210
Query: 142 YFEEALEY-FRVMQISGVE--PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
AL FR+ ++ PD +T++++L CA+V L G +H + + D+V
Sbjct: 211 QSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVF 270
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V N L+ +Y++ + A +VF+ + K+ +VSWN+++ G++ G AL F +MQ+
Sbjct: 271 VGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEED 330
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMK--KIYRVSPQI 299
K D ++++ + + G G + D+ + ++Y + P +
Sbjct: 331 IKLDVITWSAVIAGYAQKG---HGFEALDVFRQMQLYGLEPNV 370
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 149/263 (56%), Gaps = 21/263 (7%)
Query: 63 EAALEFTRMRLYG-TNPSHITFVTLLSGCADFPS--------NNVM---------VSTAL 104
E + F +M G NP+ T +L C+ + NV+ V TAL
Sbjct: 74 EPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETAL 133
Query: 105 LDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
++ YAK + LA+ VFD + R W+ +++G+ + EAL FR MQ +GV PD
Sbjct: 134 VNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDE 193
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
+T++SV++ CA L G W+H Y+ KQ + ++ + L+++Y++ GCIE A++VF
Sbjct: 194 VTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDA 253
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M + +W+S+IVG A+NG +ALE F M++ K + V+F G L+AC+H+GL+ +G
Sbjct: 254 MPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEG 313
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
+Y+ M + + + P +E +GC+
Sbjct: 314 RRYWSSMLE-FGIVPSMELYGCM 335
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Query: 109 AKFGRMDLATVVFDVMRGCDF--WTALLNGFVK-RDYFEEALEYFRVMQISGV-EPDYLT 164
+ +G +D A +F ++ + W +++ G + + +E + FR M G P+ T
Sbjct: 35 SPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFT 94
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
+ VL C+ V L G +H V K F + V L++ Y++ I A +VF +
Sbjct: 95 MAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEIT 154
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
R LV+W+++I G+A G V EAL F MQK DEV+ ++AC+ +G ++ G
Sbjct: 155 DRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG 212
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE--ALEYFNLMQKGVFKTDEVS 265
S +G I++AR++F ++ + + SWNS+I G + + + + + ++++G + +
Sbjct: 35 SPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFT 94
Query: 266 FTGALTACSHAGLIEDGLQ-YFDIMKKIYRVSPQIE 300
L ACS +E+G Q + +++K + SP +E
Sbjct: 95 MAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVE 130
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 142/279 (50%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WTS I+ + + C +A F M+ G P +I + +SGCA
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHAR 471
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
S +V + AL+++YA+ GR+ A F+ + D W L++GF + EEA
Sbjct: 472 IYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEA 531
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F M SGV+ + T +S L+ AN+ + G +H V K V N L+ +
Sbjct: 532 LKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISL 591
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G E A+ F M +R VSWN+II + +G EAL+ F+ M+K K ++V+F
Sbjct: 592 YGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTF 651
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSH GL+E+GL YF M Y + P+ +H+ C+
Sbjct: 652 IGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACV 690
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 132/269 (49%), Gaps = 24/269 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
TV + + IS H + G E ALE F M+ G +P +T +LL+ CA
Sbjct: 209 TVTFNTLISGHAQCG-HGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLH 267
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFE 144
S++ ++ +LLD+Y K G ++ A V+F+ + W +L F + +
Sbjct: 268 SYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLA 327
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
++ E F MQ +G+ P+ T +L C R + +G +H K F+ ++ V L+
Sbjct: 328 KSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLI 387
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+YS++G +E AR+V + + ++ +VSW S+I G+ + +AL F MQK D +
Sbjct: 388 DMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNI 447
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIY 293
A++ C+ + GLQ I +IY
Sbjct: 448 GLASAISGCAGINAMRQGLQ---IHARIY 473
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 2/188 (1%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQIS 156
+V L+D+Y+K G + A VF+ + D W A+L+G+ + EEAL +R M +
Sbjct: 78 IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
GV P + SVL+ C G +H K F + V N ++ +Y R G A
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLA 197
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
+VF M R V++N++I G A G ALE F MQ D V+ + L AC+
Sbjct: 198 ERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASL 257
Query: 277 GLIEDGLQ 284
G ++ G Q
Sbjct: 258 GDLQKGTQ 265
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 117/258 (45%), Gaps = 19/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + +S + ++G EA + +M G P+ ++LS C
Sbjct: 109 VSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQ 168
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVKRDYFEEA 146
+ + V A++ +Y + G LA VF M D T L++G + + E A
Sbjct: 169 GYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHA 228
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F MQ SG+ PD +TI S+L CA++ L G +H Y+ K + + +L+D+
Sbjct: 229 LEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDL 288
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G +E A +F + +V WN ++V F + ++ E F MQ + ++ ++
Sbjct: 289 YVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTY 348
Query: 267 TGALTACSHAGLIEDGLQ 284
L C+ I+ G Q
Sbjct: 349 PCILRTCTCTREIDLGEQ 366
>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 843
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 154/288 (53%), Gaps = 20/288 (6%)
Query: 37 NSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN 96
+S ID + ++ IS + +G EA F + G P+ + ++L CA +
Sbjct: 407 DSSKAIDVVIG-STMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAM 465
Query: 97 NV-----------------MVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGF 137
+ V +AL+DMYAK GR+DL+ +F + D W ++++ F
Sbjct: 466 KLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSF 525
Query: 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197
+ EEAL FR M + GV+ +TI SVL+ CA++ + G +H V K + ++
Sbjct: 526 AQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADL 585
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
+ L+D+Y + G +E+A +VF+ M ++ VSWNSII + G V E++ MQ+
Sbjct: 586 FAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEE 645
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
FK D V+F ++AC+HAG +++GL+ F M + Y+++P++EH C+
Sbjct: 646 GFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACM 693
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 124/267 (46%), Gaps = 23/267 (8%)
Query: 28 RPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNP---SHITFV 84
R +++ ++ + + W I +G A L + +M + + P SH TF
Sbjct: 92 RDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSH-TFP 150
Query: 85 TLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--R 125
++ CA + ++ V +AL+ MYA G + A VFD M R
Sbjct: 151 YVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAER 210
Query: 126 GCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185
C W +++G+VK A+E F M+ SG EP++ T+ L+V A L G+ +H
Sbjct: 211 DCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLH 270
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
K + V V NTL+ +Y++ C++ ++F M + LV+WN +I G NGFV
Sbjct: 271 TLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVD 330
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTA 272
+AL F MQK + D V+ L A
Sbjct: 331 QALLLFCDMQKSGIRPDSVTLVSLLPA 357
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 115/256 (44%), Gaps = 19/256 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + + ++G + A F MR G P+ T LS A
Sbjct: 213 VLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTL 272
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ V V+ L+ MYAK +D +F +M D W +++G V+ + ++A
Sbjct: 273 AVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQA 332
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F MQ SG+ PD +T++S+L ++ G +H Y+ + +V + + L+D+
Sbjct: 333 LLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDI 392
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + + A+ V+ +V +++I G+ +NG EA++ F + + + + V+
Sbjct: 393 YFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAI 452
Query: 267 TGALTACSHAGLIEDG 282
L AC+ ++ G
Sbjct: 453 ASVLPACASMAAMKLG 468
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 10/190 (5%)
Query: 76 TNPSHITFVTLLSG---CADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM-RG---CD 128
+PSH++ + G A + + + T L+ MY R A VF + RG C
Sbjct: 50 VSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACA 109
Query: 129 F-WTALLNGFVKRDYFEEALEYFRVM--QISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185
W L+ G + AL ++ M S PD T V+ CA + + +G +H
Sbjct: 110 LPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVH 169
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
R ++ V + L+ +Y+ G + ARQVF M +R V WN ++ G+ G V
Sbjct: 170 RTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVS 229
Query: 246 EALEYFNLMQ 255
A+E F M+
Sbjct: 230 SAVELFGDMR 239
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 140/263 (53%), Gaps = 19/263 (7%)
Query: 62 LEAALEFTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTAL 104
L + +T+M G P TF T+L A +NV VSTAL
Sbjct: 124 LHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTAL 183
Query: 105 LDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
++MY + A VFD + R W AL+ G+ F + ++ FR MQI+G +P
Sbjct: 184 VNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVE 243
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
+T++ VL CA++ L G W+ Y+ + NV V L+D+Y++ G ++ A ++F+
Sbjct: 244 VTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKA 303
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M + + +WN +I G+A+NG AL+ F+ M FK DEV+F G L AC H GL+ +G
Sbjct: 304 MRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEG 363
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
YF MK+ + + P+IEH+GC+
Sbjct: 364 RTYFTSMKEEFGLRPRIEHYGCM 386
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 153/312 (49%), Gaps = 50/312 (16%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV----- 98
T V W S I+ + + G EA L F M+ G P T V LLS + ++
Sbjct: 199 TLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVH 258
Query: 99 ------------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGF------- 137
+V+ AL+DMYAK G + A VFD M D WT ++N +
Sbjct: 259 LHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLID 318
Query: 138 ------------------------VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173
V+ + EA++ F M SGV + T++++L+ C+
Sbjct: 319 CALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCS 378
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
++ L +G H Y+ + + +CN ++D+Y++ G ++ A VF M ++ VSWN
Sbjct: 379 HMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNV 438
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
II A++G+ EA+E F MQ DE++FTG L+ACSH+GL++ G YF+IM +
Sbjct: 439 IIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTF 498
Query: 294 RVSPQIEHHGCI 305
+SP +EH+ C+
Sbjct: 499 GISPDVEHYACM 510
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 124/273 (45%), Gaps = 50/273 (18%)
Query: 62 LEAALEFTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTAL 104
+++ L + RM G P+ T +L CA ++ V A+
Sbjct: 116 IKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAI 175
Query: 105 LDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
L++Y G + A VFD + R W +++NG+ K EEA+ FR MQ G+EPD
Sbjct: 176 LNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDV 235
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T++ +L+V +G ++H ++ + + V N LMD+Y++ G ++ A+ VF +
Sbjct: 236 FTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQ 295
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM----------------QKGVFK------ 260
M + +VSW +I +A +G + ALE+FN M Q+G++
Sbjct: 296 MLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLF 355
Query: 261 ---------TDEVSFTGALTACSHAGLIEDGLQ 284
++ + L++CSH G + G Q
Sbjct: 356 YRMCDSGVMANDTTLVAILSSCSHMGDLALGKQ 388
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 72/145 (49%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
L+ G+ ++L +R M G+ P+ TI VL CA +G+ +H K
Sbjct: 105 LIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLG 164
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
+ V N ++++Y G I AR+VF + +RTLVSWNS+I G++ G EA+ F
Sbjct: 165 MGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFR 224
Query: 253 LMQKGVFKTDEVSFTGALTACSHAG 277
MQ+ + D + G L+ + G
Sbjct: 225 EMQEVGLEPDVFTLVGLLSVSTKHG 249
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 14/137 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
V W I G EA F +M+ G P ITF LLS C+ + L
Sbjct: 433 AVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACS---------HSGL 483
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
+D + ++ + F + + + +++ +R EA+ + M V+PD +
Sbjct: 484 VDTGQHY--FEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMP---VKPDVVV 538
Query: 165 IISVLNVCANVRTLGIG 181
++L C L IG
Sbjct: 539 WSALLGACRTYGNLAIG 555
>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 764
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 151/286 (52%), Gaps = 19/286 (6%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV 98
+S V WT+ IS ++G +A F +M +G S T ++++ CA S N+
Sbjct: 328 RSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNL 387
Query: 99 MVST-----------------ALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK 139
S +L+ M+AK G +D +++VFD M R W A++ G+ +
Sbjct: 388 GTSVHGYMFRHELPMDIATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQ 447
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
Y +AL F M+ PD +TI+S+L CA+ L +G W+H +V + + + V
Sbjct: 448 NGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILV 507
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
+L+D+Y + G ++ A++ F +M LVSW++IIVG+ +G AL +++ +
Sbjct: 508 DTSLVDMYCKCGDLDIAQRCFNQMPSHDLVSWSAIIVGYGYHGKGETALRFYSKFLESGM 567
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
K + V F L++CSH GL+E GL ++ M + + ++P +EHH C+
Sbjct: 568 KPNHVIFLSVLSSCSHNGLVEQGLNIYESMTRDFGIAPNLEHHACV 613
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 122/248 (49%), Gaps = 16/248 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WTS I + R+G + EA F MR G PS +T ++LL G ++
Sbjct: 136 VPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLLFGVSELAHVQCLHGSAIL 195
Query: 96 ----NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
+++ +S ++L MY K ++ + +FD M D W +L++ + + Y E L
Sbjct: 196 YGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLL 255
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
+ M+I G EPD T SVL+V A+ L +G +H + + F + V +L+ +Y +
Sbjct: 256 LKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLK 315
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G I+ A ++F+R + +V W ++I G NG +AL F M K K+ +
Sbjct: 316 GGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASV 375
Query: 270 LTACSHAG 277
+TAC+ G
Sbjct: 376 ITACAQLG 383
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 125/275 (45%), Gaps = 24/275 (8%)
Query: 27 KRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL 86
KR +S+ +S S T + + I+ H G + + M TF +L
Sbjct: 18 KRYVVSLPHPSSASA--TINSFNAIINHHSSQGAHRQVLATYASMLKTHVPSDAYTFPSL 75
Query: 87 LSGCADFP-----------------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGC 127
L C+ S + ++++L++ YAKFG D+A VFD M R
Sbjct: 76 LKACSSLNLFSLGLSLHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDFMPERNV 135
Query: 128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
WT+++ + + EA F M+ G++P +T++S+L V L +H
Sbjct: 136 VPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLL---FGVSELAHVQCLHGS 192
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
F ++ + N+++ +Y + IE++R++F M +R LVSWNS++ +A G++ E
Sbjct: 193 AILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEV 252
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
L M+ F+ D +F L+ + G ++ G
Sbjct: 253 LLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLG 287
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 140/279 (50%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I + ++ EA + F +M G P+ ++ + L CAD
Sbjct: 303 VSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
NV V +L+ MY K +D A +F + R W A++ GF + EA
Sbjct: 363 SVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEA 422
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L YF MQ V+PD T +SV+ A + W+H V + NV V L+D+
Sbjct: 423 LNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDM 482
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G I AR +F M +R + +WN++I G+ +G ALE F MQKG + + V+F
Sbjct: 483 YAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTF 542
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++ACSH+GL+E GL+ F +MK+ Y + P ++H+G +
Sbjct: 543 LSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAM 581
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 123/259 (47%), Gaps = 27/259 (10%)
Query: 62 LEAALEF-TRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTA 103
L+ AL+F RMR P F LL C D S ++ T
Sbjct: 116 LDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTG 175
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L +MYAK ++ A VFD M D W ++ G+ + ALE +M ++P
Sbjct: 176 LENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPS 235
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
++TI+SVL + +R + IG +H Y + F V + L+D+Y++ G ++ AR +F
Sbjct: 236 FITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFD 295
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
M +R +VSWNS+I + N EA+ F M K +VS GAL AC+ G +E
Sbjct: 296 GMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLER 355
Query: 282 GLQYFDIMKKIYRVSPQIE 300
G + I+++S ++E
Sbjct: 356 G-------RFIHKLSVELE 367
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 2/186 (1%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQIS 156
+ T L+ ++ ++G +D A VF+ + + + +L GF K ++AL++F M+
Sbjct: 70 LFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDD 129
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
VEP +L VC + L +G +H + K F ++ L ++Y++ + A
Sbjct: 130 EVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEA 189
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
R+VF RM +R LVSWN+I+ G++ NG ALE NLM + K ++ L A S
Sbjct: 190 RKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSAL 249
Query: 277 GLIEDG 282
LI G
Sbjct: 250 RLIRIG 255
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 19/158 (12%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
T V W + I ++G +EA F++M+ P T+V++++ A+
Sbjct: 402 TIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIH 461
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
NV V+TAL+DMYAK G + +A ++FD+M R W A+++G+ +
Sbjct: 462 GVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGK 521
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182
ALE F MQ + P+ +T +SV++ C++ + GL
Sbjct: 522 AALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGL 559
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 151/280 (53%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSG-CILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
+ WT+ I+ + +SG C EA F +M P+H +F ++L C +
Sbjct: 126 MSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 185
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
++ V +L+ MYA+ GRM+ A FD++ + + A+++G+ K EE
Sbjct: 186 YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 245
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A F + +G+ T S+L+ A++ +G G +H + K +K N +CN L+
Sbjct: 246 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALIS 305
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YSR G IE A QVF M R ++SW S+I GFA +GF ALE F+ M + K +E++
Sbjct: 306 MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 365
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ L+ACSH G+I +G ++F+ M K + + P++EH+ C+
Sbjct: 366 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACM 405
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 121/262 (46%), Gaps = 23/262 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WT I+R + GC +A F M L G P T+ ++LS C +
Sbjct: 22 VTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 81
Query: 95 ------SNNVMVSTALLDMYAKF---GRMDLATVVFDVMRGCDF--WTALLNGFVKR-DY 142
+ +V V +L+DMYAK G +D + VF+ M + WTA++ + + +
Sbjct: 82 VIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGEC 141
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+EA+E F M + P++ + SVL C N+ G ++ Y K V N+
Sbjct: 142 DKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS 201
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+ +Y+R G +E AR+ F + ++ LVS+N+I+ G+A N EA FN +
Sbjct: 202 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 261
Query: 263 EVSFTGALTACSHAGLIEDGLQ 284
+F L+ + G + G Q
Sbjct: 262 AFTFASLLSGAASIGAMGKGEQ 283
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 6/182 (3%)
Query: 117 ATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A VFD M R WT ++ F + +A++ F M++SG PD T SVL+ C
Sbjct: 9 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF---GCIEFARQVFQRMHKRTLVSW 231
+ L +G +H V + +V V +L+D+Y++ G ++ +R+VF++M + ++SW
Sbjct: 69 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128
Query: 232 NSIIVGFAVNGFVG-EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
+II +A +G EA+E F M G + + SF+ L AC + G Q +
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188
Query: 291 KI 292
K+
Sbjct: 189 KL 190
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 145/282 (51%), Gaps = 19/282 (6%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
D + W+ I+R+ +S EA F RMR P+ T +LL CA
Sbjct: 310 DDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQI 369
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYF 143
NV VS AL+DMYAK GRM+ + +F C W ++ G+V+
Sbjct: 370 HCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNG 429
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
E+AL F+ M V+ +T SVL CA + L G +H K + N V N L
Sbjct: 430 EKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNAL 489
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G I+ AR VF + + VSWN++I G++V+G GEAL+ F M + K D+
Sbjct: 490 IDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDK 549
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F G L+ACS+AGL++ G YF M + Y + P EH+ C+
Sbjct: 550 VTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCM 591
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 134/268 (50%), Gaps = 20/268 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV------- 98
V WT ++ + + C E+ F+RMR+ G P++ TF ++L C NV
Sbjct: 212 VSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGC 271
Query: 99 ----------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
V L+D+Y K G +D A VF+ M D W+ ++ + + + EEA
Sbjct: 272 AFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEA 331
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+E F M+ V P+ T+ S+L CA++ L +G +H +V K NV V N LMD+
Sbjct: 332 IEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDM 391
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G +E + Q+F T VSWN++IVG+ G +AL F M + + EV++
Sbjct: 392 YAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTY 451
Query: 267 TGALTACSHAGLIEDGLQYFDI-MKKIY 293
+ L AC+ +E G Q + +K IY
Sbjct: 452 SSVLRACAGIAALEPGSQIHSLSVKTIY 479
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 2/181 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
++ V TAL+D Y+ G + A VFD + D WT ++ +V+ + FEE+L+ F M
Sbjct: 178 SDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRM 237
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+I G +P+ T SVL C + +G +H K + + + V L+D+Y + G +
Sbjct: 238 RIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDV 297
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ A QVF+ M K ++ W+ +I +A + EA+E F M++G+ ++ + L AC
Sbjct: 298 DDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQAC 357
Query: 274 S 274
+
Sbjct: 358 A 358
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 23/217 (10%)
Query: 90 CADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEAL 147
C D +NN+ LL+ Y K+ + A +FD M R + L+ G+ + F EA+
Sbjct: 76 CLDLFANNI-----LLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAI 130
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
F +Q G E + +VL + + +G +H V K F + V L+D Y
Sbjct: 131 GLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCY 190
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
S G E ARQVF + + +VSW ++ + N E+L+ F+ M+ FK + +F
Sbjct: 191 SVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFA 250
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
L AC GL+ F++ K + HGC
Sbjct: 251 SVLKACV-------GLEVFNVGKAV---------HGC 271
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 19/163 (11%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-- 95
S+S T V W + I + ++G +A + F M + +T+ ++L CA +
Sbjct: 406 SESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALE 465
Query: 96 ---------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFV 138
N +V AL+DMYAK G + A +VFD++R D W A+++G+
Sbjct: 466 PGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYS 525
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG 181
+ EAL+ F M + +PD +T + +L+ C+N L G
Sbjct: 526 VHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRG 568
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 144/310 (46%), Gaps = 50/310 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFPS--------- 95
V W IS + G +A F RM R T V+ LS C+ +
Sbjct: 97 VSWNGLISSYVGHGRFEDAISVFQRMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYR 156
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD-------------------- 128
+V AL+DM+ K G +D A +FD MR +
Sbjct: 157 YVVTEFEMSVRTGNALVDMFCKCGCLDKARAIFDSMRDKNVKCWTSMVSGYVSNGRTDEA 216
Query: 129 -------------FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
WTA++NG+V+ + F+EALE FR MQ + + PD ++S+L CA
Sbjct: 217 RELFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQT 276
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
L G W+H Y+ + + V L+D+Y++ GCIE A VF M +R SW S+I
Sbjct: 277 GALEQGKWIHGYIRENRVTVDKVVGTALVDMYAKCGCIETALGVFYEMKERDTASWTSLI 336
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV 295
G A NG G AL+ + M+ + D+++F LTACSH G + +G + F M + +++
Sbjct: 337 YGLATNGMSGRALDLYYEMENVGVRLDDITFVAVLTACSHGGFVAEGRRIFYSMTERHKI 396
Query: 296 SPQIEHHGCI 305
P+ EH+ C+
Sbjct: 397 QPKSEHYSCL 406
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 106/217 (48%), Gaps = 35/217 (16%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF-RVMQIS 156
V +L+ MYA G+M++ VFD M D W L++ +V FE+A+ F R+ + S
Sbjct: 67 VCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQRMSRES 126
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
++ D TI+S L+ C+ ++ L IG ++RYV + F+ +VR N L+D++ + GC++ A
Sbjct: 127 NLKADEGTIVSTLSACSVLKNLEIGERIYRYVVTE-FEMSVRTGNALVDMFCKCGCLDKA 185
Query: 217 RQVFQRMHKRTLVSWNSIIVGFA--------------------------VNGFV-----G 245
R +F M + + W S++ G+ +NG+V
Sbjct: 186 RAIFDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFD 245
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
EALE F MQ + D LT C+ G +E G
Sbjct: 246 EALELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQG 282
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
+L + F + L F ++ G+ PD T+ VL +R + G +H Y K
Sbjct: 1 MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
+ + VCN+LM +Y+ G +E +VF M +R +VSWN +I + +G +A+ F
Sbjct: 61 LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQ 120
Query: 253 LM-QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
M ++ K DE + L+ACS L+ +I ++IYR
Sbjct: 121 RMSRESNLKADEGTIVSTLSACSV-------LKNLEIGERIYR 156
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 35/220 (15%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------ 92
+S + V WT+ ++ + + EA F M+ P + V+LL+GCA
Sbjct: 222 RSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQ 281
Query: 93 -------FPSNNV----MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
N V +V TAL+DMYAK G ++ A VF M+ D WT+L+ G
Sbjct: 282 GKWIHGYIRENRVTVDKVVGTALVDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLAT 341
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-------HRYVPKQD 192
AL+ + M+ GV D +T ++VL C++ + G + H+ PK +
Sbjct: 342 NGMSGRALDLYYEMENVGVRLDDITFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSE 401
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH---KRTLV 229
+ L+D+ R G ++ A ++ +MH +TLV
Sbjct: 402 HY------SCLIDLLCRAGLLDEAEELIDKMHGERDKTLV 435
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 125/204 (61%), Gaps = 2/204 (0%)
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L+ YA+ GR+ A +FD M R W+A++NG+V+ EAL F MQ GV PD
Sbjct: 283 LITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPD 342
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
++ VL CA + L G W+H Y+ + + V + L+D+Y++ G ++ A +VF+
Sbjct: 343 DTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFK 402
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
M ++ +++W ++I G A++G EALE F+ M++ K D+++F GAL AC+H GL++
Sbjct: 403 VMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDK 462
Query: 282 GLQYFDIMKKIYRVSPQIEHHGCI 305
G + FD M + Y + P+IEH+GC+
Sbjct: 463 GRELFDSMVRKYGIKPKIEHYGCM 486
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 21/214 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF----------- 93
V W++ ++ + ++G EA F RM+ G P V +L+ CA
Sbjct: 308 AVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHG 367
Query: 94 --PSNNVMVS----TALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+NN+ ++ TAL+DMYAK G M LA VF VM+ + WT ++ G E
Sbjct: 368 YLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSE 427
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-HRYVPKQDFKDNVRVCNTLM 204
ALE F M+ GV+PD + I L C + + G + V K K + ++
Sbjct: 428 ALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMV 487
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVG 237
D+ +R G + AR++ ++M K + W +++ G
Sbjct: 488 DLLARNGLLNEAREMVEKMPMKPDALIWGALMAG 521
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
NTL+ Y+R G + AR +F M R VSW++++ G+ G EAL F MQ +
Sbjct: 281 NTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVR 340
Query: 261 TDEVSFTGALTACSHAGLIEDG 282
D+ G L AC+ G++E G
Sbjct: 341 PDDTVLVGVLAACAQLGVLEQG 362
>gi|147788829|emb|CAN73311.1| hypothetical protein VITISV_018159 [Vitis vinifera]
Length = 725
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 152/281 (54%), Gaps = 24/281 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WTS IS + G EA EF M + P+ T V+++S C +
Sbjct: 77 VSWTSIISGLSKCGFDEEAIGEFLSMDV---KPNTSTLVSVVSACCGLRAVRFGKAIHGY 133
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+N+++ ALLD Y K G + A +F M R WT ++ G + EEA
Sbjct: 134 SLRSMDGDNIILDNALLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLAQGGLCEEA 193
Query: 147 LEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVP-KQDFKDNVRVCNTLM 204
+E F+ M G P+ +T+++VL C+++ L +G W+H Y+ + D + V N L+
Sbjct: 194 VEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNLGRWVHSYISIRYDLVVDGNVGNALI 253
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
++Y++ + A +VF + + ++SW++II G A+NG AL++F+LM D+V
Sbjct: 254 NMYAKCSDMYMAVRVFNELTHKDMISWSTIIGGMAMNGHGMHALQFFSLMLVHGVSPDDV 313
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L+ACSHAGL+E GL +F M +Y ++PQ++H+ C+
Sbjct: 314 TFIGLLSACSHAGLVEQGLIFFKAMNNVYGIAPQMQHYACM 354
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 102/260 (39%), Gaps = 14/260 (5%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
+ W++ I +G + A F+ M ++G +P +TF+ LLS C S+ +V L+
Sbjct: 278 ISWSTIIGGMAMNGHGMHALQFFSLMLVHGVSPDDVTFIGLLSAC----SHAGLVEQGLI 333
Query: 106 DMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
A V+ + + +++ + + EEA + R M + P + +
Sbjct: 334 FFKA-------MNNVYGIAPQMQHYACMVDMYGRAGLLEEAEAFIRGMPMEAEGPIWGAL 386
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
++ + N + G R + NT +R+ R + + M
Sbjct: 387 LNACKIHGNEKMFGXIBQSLRNAKGVSIGTLALLSNTYASS-NRWDDANKVRDMMRDMGL 445
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
+ + + I V +N + G A F K D +F G +A SH L+E G +
Sbjct: 446 KKMSGCSWIEVDAMINRYDG-ANRSFAFAGKSRVLPDIATFIGLFSASSHKELVEQGFVF 504
Query: 286 FDIMKKIYRVSPQIEHHGCI 305
+ P+I+H+ C+
Sbjct: 505 LGATND-DGIMPKIQHYACV 523
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
++ T L +++ L L +H K ++ + NTL+ Y FA+ VF
Sbjct: 9 NHFTFTHALIASSSLHALHKTLEIHARAIKSGHYSDIFIQNTLLHSYVVENNXVFAKSVF 68
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ + +VSW SII G + GF EA+ F M K + + ++AC
Sbjct: 69 KSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSMD---VKPNTSTLVSVVSAC 118
>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 148/279 (53%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WT+ I + + G A F RMR +P+ TF ++SGCA
Sbjct: 236 VSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAH 295
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+++ V+ +++ MY+K ++DLA+ VF + D W+ +++G+ + EEA
Sbjct: 296 VIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEA 355
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+Y M+ G P+ SVL+VC N+ L G +H +V + N V + L+++
Sbjct: 356 FDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINM 415
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
YS+ G I+ A ++F +VSW ++I G+A +G+ EA++ F + K + D V+F
Sbjct: 416 YSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTF 475
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACSHAGL++ G YF+ + K++++ P +H+GC+
Sbjct: 476 IAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCM 514
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 132/276 (47%), Gaps = 29/276 (10%)
Query: 36 NNSKSTIDTTVQ-----WTSSISRHCRSGCILEAALEFTRM-----------------RL 73
NN++ D +Q WT+ IS + EA F++M +
Sbjct: 18 NNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALKA 77
Query: 74 YGTNPSHITFVTLLSGCA---DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCD 128
G N S ++F L G + DF N+V V +AL+DMY K G++D +VF M R
Sbjct: 78 CGLNMS-VSFGESLHGYSVKTDFV-NSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVV 135
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
WTA++ G V+ Y +EAL YF M I V D T S L CA+ L G +H
Sbjct: 136 SWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQT 195
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K+ F V NTL +Y++ G +++ ++F+ M +R +VSW +II+ G A+
Sbjct: 196 LKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAV 255
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ F M++ +E +F ++ C+ G IE G Q
Sbjct: 256 KAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQ 291
>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
Length = 839
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 148/280 (52%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-------- 96
+V W + I+ ++ C + M YG P T+ ++L CA S
Sbjct: 404 SVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHG 463
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ VS+ ++DMY K G + A + D + G + W ++++GF EE
Sbjct: 464 KAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEE 523
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A ++F M GV+PD+ T +VL+ CAN+ T+ +G +H + KQ+ + + +TL+D
Sbjct: 524 AQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVD 583
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + + +F++ K VSWN++I G+A++G EALE F MQ+ + +
Sbjct: 584 MYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHAT 643
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L ACSH GL++DG +YF +M Y++ PQ+EH C+
Sbjct: 644 FVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACM 683
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 104/258 (40%), Gaps = 19/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + +S +C+ G ++ M G P T LL C
Sbjct: 102 VSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAV 161
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+V +AL+DMY K ++ A F M R W A + G V+ + +
Sbjct: 162 AVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRG 221
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F MQ G+ SV CA + L +H + K F + V ++DV
Sbjct: 222 LELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDV 281
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ + AR+ F + T+ + N+++VG G EAL+ F M + D VS
Sbjct: 282 YAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSL 341
Query: 267 TGALTACSHAGLIEDGLQ 284
+G +AC+ GLQ
Sbjct: 342 SGVFSACAEVKGYLQGLQ 359
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 119/265 (44%), Gaps = 35/265 (13%)
Query: 45 TVQWTSSISRHCRSGCILEA----ALE-FTRMRLYGTNPSHITFVTLLSGCADFP----- 94
+V W ++I+ GC+ LE F +M+ G S + ++ CA
Sbjct: 202 SVSWGAAIA-----GCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTA 256
Query: 95 ------------SNNVMVSTALLDMYAKFGRMDLATVVF-----DVMRGCDFWTALLNGF 137
S + +V TA++D+YAK + A F ++ C+ A++ G
Sbjct: 257 RQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACN---AMMVGL 313
Query: 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197
V+ EAL+ F+ M SG+ D +++ V + CA V+ GL +H K F +V
Sbjct: 314 VRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDV 373
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
V N ++D+Y + + A VFQ M +R VSWN+II N + + Y N M +
Sbjct: 374 CVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRY 433
Query: 258 VFKTDEVSFTGALTACSHAGLIEDG 282
+ D+ ++ L AC+ +E G
Sbjct: 434 GMEPDDFTYGSVLKACAGLQSLEYG 458
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 2/184 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P + + +L YA G A +F M D W ALL+G+ +R F +++
Sbjct: 65 MPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLS 124
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M GV PD T+ +L C + L +G+ +H K + +VR + L+D+Y +
Sbjct: 125 VEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKC 184
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
+E A + F M +R VSW + I G N LE F MQ+ + ++
Sbjct: 185 RSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVF 244
Query: 271 TACS 274
+C+
Sbjct: 245 RSCA 248
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 6/120 (5%)
Query: 164 TIISVLNVCANV--RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
T + +CA L G H + F V N L+ +Y+R G AR VF
Sbjct: 4 TFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFD 63
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
M R VSWN+++ +A G G A F M D VS+ L+ G+ D
Sbjct: 64 VMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMP----DPDVVSWNALLSGYCQRGMFRD 119
>gi|147771209|emb|CAN67545.1| hypothetical protein VITISV_030949 [Vitis vinifera]
Length = 598
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 155/287 (54%), Gaps = 20/287 (6%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------ 92
++ + V W + I+ + ++ A F MR+ ++ V+L+S C +
Sbjct: 206 ETNVRDLVSWNTMIAGYAKNNDCRNAFSLFREMRIGNVECDRVSLVSLISACTNXRDLHM 265
Query: 93 ---------FPSNNVMV--STALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
+M+ TAL++MY+K G ++L VFD + + W +++ G+V+
Sbjct: 266 GKAVHAFIKVSGMEMMIHFETALINMYSKCGSIELGRKVFDELADENIASWNSMIYGYVE 325
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDNVR 198
+ EAL + V+Q ++PD +T++ +++ C + L G+ ++ Y+ D +
Sbjct: 326 CGFNIEALSLWNVIQSRKIKPDEVTMLGLISACRSSGDLHQGIQINSYIESSDHLSGSTV 385
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
+CN L+D+Y++ G ++ A VF +M +R ++SW SIIVG+A+NG EAL F M
Sbjct: 386 LCNALIDMYAKCGSMDRAETVFSKMPRRDVISWTSIIVGYAINGEGEEALLAFRKMGAEK 445
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ + V+F G L+AC HAGL++ G +DIM K Y + P+IEH GC+
Sbjct: 446 IEPNSVTFLGVLSACDHAGLVDKGKNLYDIMCKYYHIEPKIEHCGCM 492
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 116/226 (51%), Gaps = 19/226 (8%)
Query: 78 PSHITFVTLLSGCADFPSNNV-----------------MVSTALLDMYAKFGRMDLATVV 120
P+++T V L+SGC +F ++ V AL+ +YA+F MD A +
Sbjct: 144 PNYVTLVILISGCVEFGRFSIGNSLHSYCCKTSLDLKNEVRNALIHLYAEFEYMDAAAKL 203
Query: 121 FDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL 178
F D W ++ G+ K + A FR M+I VE D ++++S+++ C N R L
Sbjct: 204 FHETNVRDLVSWNTMIAGYAKNNDCRNAFSLFREMRIGNVECDRVSLVSLISACTNXRDL 263
Query: 179 GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF 238
+G +H ++ + + L+++YS+ G IE R+VF + + SWNS+I G+
Sbjct: 264 HMGKAVHAFIKVSGMEMMIHFETALINMYSKCGSIELGRKVFDELADENIASWNSMIYGY 323
Query: 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
GF EAL +N++Q K DEV+ G ++AC +G + G+Q
Sbjct: 324 VECGFNIEALSLWNVIQSRKIKPDEVTMLGLISACRSSGDLHQGIQ 369
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 11/188 (5%)
Query: 97 NVMVSTALLDMYAKFGR-MDLATVVFDVMRGCDFWTA--LLNGFVKRDYFEEALEYFRVM 153
NV V AL+ +Y+ + M A +FD + T +++GFVK F + F +
Sbjct: 74 NVNVLNALVYLYSSAEKSMGCACALFDKIPEKTIVTVNCMISGFVKNKRFHAGVGLFNRV 133
Query: 154 QISG----VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ--DFKDNVRVCNTLMDVY 207
G V+P+Y+T++ +++ C IG +H Y K D K+ VR N L+ +Y
Sbjct: 134 LGGGFDLRVKPNYVTLVILISGCVEFGRFSIGNSLHSYCCKTSLDLKNEVR--NALIHLY 191
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
+ F ++ A ++F + R LVSWN++I G+A N A F M+ G + D VS
Sbjct: 192 AEFEYMDAAAKLFHETNVRDLVSWNTMIAGYAKNNDCRNAFSLFREMRIGNVECDRVSLV 251
Query: 268 GALTACSH 275
++AC++
Sbjct: 252 SLISACTN 259
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 151/280 (53%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSG-CILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
+ WT+ I+ + +SG C EA F +M P+H +F ++L C +
Sbjct: 121 MSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 180
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
++ V +L+ MYA+ GRM+ A FD++ + + A+++G+ K EE
Sbjct: 181 YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 240
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A F + +G+ T S+L+ A++ +G G +H + K +K N +CN L+
Sbjct: 241 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALIS 300
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YSR G IE A QVF M R ++SW S+I GFA +GF ALE F+ M + K +E++
Sbjct: 301 MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 360
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ L+ACSH G+I +G ++F+ M K + + P++EH+ C+
Sbjct: 361 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACM 400
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 121/262 (46%), Gaps = 23/262 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WT I+R + GC +A F M L G P T+ ++LS C +
Sbjct: 17 VTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 76
Query: 95 ------SNNVMVSTALLDMYAKF---GRMDLATVVFDVMRGCDF--WTALLNGFVKR-DY 142
+ +V V +L+DMYAK G +D + VF+ M + WTA++ + + +
Sbjct: 77 VIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGEC 136
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+EA+E F M + P++ + SVL C N+ G ++ Y K V N+
Sbjct: 137 DKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS 196
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+ +Y+R G +E AR+ F + ++ LVS+N+I+ G+A N EA FN +
Sbjct: 197 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 256
Query: 263 EVSFTGALTACSHAGLIEDGLQ 284
+F L+ + G + G Q
Sbjct: 257 AFTFASLLSGAASIGAMGKGEQ 278
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 6/182 (3%)
Query: 117 ATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A VFD M R WT ++ F + +A++ F M++SG PD T SVL+ C
Sbjct: 4 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF---GCIEFARQVFQRMHKRTLVSW 231
+ L +G +H V + +V V +L+D+Y++ G ++ +R+VF++M + ++SW
Sbjct: 64 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123
Query: 232 NSIIVGFAVNGFVG-EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
+II +A +G EA+E F M G + + SF+ L AC + G Q +
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183
Query: 291 KI 292
K+
Sbjct: 184 KL 185
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 159/289 (55%), Gaps = 22/289 (7%)
Query: 37 NSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYG-TNPSHITFVTLLSGCADFPS 95
++ ID + ++ IS + +G + E AL+ R L P+ +T ++L CA +
Sbjct: 402 DAARAIDVVIG-STVISGYVLNG-MSEKALQMFRYLLEQCIKPNAVTVASVLPACASISA 459
Query: 96 -----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNG 136
V +AL+DMYAK GR+DL+ +F M D W ++++
Sbjct: 460 LPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISS 519
Query: 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
F + +EAL+ FR M + G++ + +TI S L+ CA++ + G +H + K K +
Sbjct: 520 FSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKAD 579
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
+ + L+D+Y++ G +E A +VF+ M + VSWNSII + +G V E++ + + MQ+
Sbjct: 580 IFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQE 639
Query: 257 GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+K D V+F ++AC+HAGL+E+GLQ F M K Y ++P++EH C+
Sbjct: 640 EGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACM 688
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 130/268 (48%), Gaps = 19/268 (7%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
D V W IS ++G + EA F M G P +T V+LL D
Sbjct: 306 DDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEV 365
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYF 143
+ + +AL+D+Y K + A ++D R D + +++G+V
Sbjct: 366 HGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMS 425
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
E+AL+ FR + ++P+ +T+ SVL CA++ L +G +H YV + ++ V + L
Sbjct: 426 EKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESAL 485
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
MD+Y++ G ++ + +F +M + V+WNS+I F+ NG EAL+ F M K +
Sbjct: 486 MDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNN 545
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKK 291
V+ + AL+AC+ I G + ++ K
Sbjct: 546 VTISSALSACASLPAIYYGKEIHGVIIK 573
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 2/190 (1%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
+++V V +AL+ MY+ G + A FD M R C W +++G++K A+ FR
Sbjct: 173 ASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRN 232
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M++SG EP++ T+ L+VCA L G+ +H K + V V NTL+ +Y++ C
Sbjct: 233 MRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRC 292
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ A ++F+ + + LV+WN +I G NG + EAL F M + + D V+ L A
Sbjct: 293 LDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPA 352
Query: 273 CSHAGLIEDG 282
+ ++ G
Sbjct: 353 LTDLNGLKQG 362
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 114/248 (45%), Gaps = 19/248 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC---ADFPSN------ 96
V W + + ++G + A F MR+ G P+ T LS C AD S
Sbjct: 208 VLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSL 267
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
V V+ LL MYAK +D A +F+++ D W +++G V+ +EA
Sbjct: 268 AVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEA 327
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F M SG PD +T++S+L ++ L G +H Y+ + + + + L+D+
Sbjct: 328 LGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDI 387
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + + AR ++ +V +++I G+ +NG +AL+ F + + K + V+
Sbjct: 388 YFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTV 447
Query: 267 TGALTACS 274
L AC+
Sbjct: 448 ASVLPACA 455
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 7/203 (3%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDF-WTALLNGFVKRDYFEEALEYF 150
N++ + T LL MY R A VF + G W L+ GF + A+ ++
Sbjct: 68 NHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFY 127
Query: 151 RVM--QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
M + PD T+ V+ CA + + +G +HR +V V + L+ +YS
Sbjct: 128 VKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYS 187
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
G + AR F M R V WN ++ G+ G VG A+ F M+ + + +
Sbjct: 188 DAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLAC 247
Query: 269 ALTACSHAGLIEDGLQYFDIMKK 291
L+ C+ + G+Q + K
Sbjct: 248 FLSVCAAEADLLSGVQLHSLAVK 270
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 25/114 (21%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W S IS + G + E+ RM+ G P H+TF+ L+S CA
Sbjct: 612 VSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQC 671
Query: 95 -SNNVMVS------TALLDMYAKFGRMD-----LATVVFDVMRGCDFWTALLNG 136
+ +++ ++D+Y++ GR+D +A + F G W ALL+
Sbjct: 672 MTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAG--IWGALLHA 723
>gi|296083914|emb|CBI24302.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 152/281 (54%), Gaps = 24/281 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WTS IS + G EA EF M + P+ T V+++S C +
Sbjct: 143 VSWTSIISGLSKCGFDEEAIGEFLSMDV---KPNTSTLVSVVSACCGLRAVRFGKAIHGY 199
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+N+++ ALLD Y K G + A +F M R WT ++ G + EEA
Sbjct: 200 SLRSMDGDNIILDNALLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLAQGGLCEEA 259
Query: 147 LEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVP-KQDFKDNVRVCNTLM 204
+E F+ M G P+ +T+++VL C+++ L +G W+H Y+ + D + V N L+
Sbjct: 260 VEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNLGRWVHSYISTRYDLVVDGNVGNALI 319
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
++Y++ + A +VF + + ++SW++II G A+NG AL++F+LM D+V
Sbjct: 320 NMYAKCSDMYMAVRVFNELTHKDMISWSTIIGGMAMNGHGMHALQFFSLMLVHGVSPDDV 379
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L+ACSHAGL+E GL +F M +Y ++PQ++H+ C+
Sbjct: 380 TFIGLLSACSHAGLVEQGLIFFKAMNNVYGIAPQMQHYACM 420
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
++AL + M + ++ T L +++ L L +H K ++ + NTL
Sbjct: 58 QDALLLYNQMVLHRTSHNHFTFTHALIASSSLHALHKTLEIHARAIKSGHYSDIFIQNTL 117
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+ Y FA+ VF+ + +VSW SII G + GF EA+ F M K +
Sbjct: 118 LHSYVVENNFVFAKSVFKSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSMD---VKPNT 174
Query: 264 VSFTGALTAC 273
+ ++AC
Sbjct: 175 STLVSVVSAC 184
>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g27610-like [Cucumis sativus]
Length = 878
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 147/276 (53%), Gaps = 16/276 (5%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG-------------CAD 92
V WT+ I ++ +A F +M G P+H T+ T+L+G
Sbjct: 374 VTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKA 433
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
+ V+TALLD Y K G + + VF + D W+A+L G + E+A+E F
Sbjct: 434 YYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVF 493
Query: 151 RVMQISGVEPDYLTIISVLNVCAN-VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
+ GV+P+ T SV+N C++ T+ G +H K + + V + L+ +YS+
Sbjct: 494 IQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSK 553
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G IE A +VF R +R +VSWNS+I G+ +G +ALE F +MQ D+V+F G
Sbjct: 554 KGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGV 613
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTAC+HAGL+E+G +YF+IM K Y + + EH+ C+
Sbjct: 614 LTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCM 649
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 13/202 (6%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V V T+L+DMY K + +FD M + WT+LL+G+ + +E + MQ
Sbjct: 138 DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQ 197
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ GV P+ T +VL A+ + G+ +H + K F+ VCN L+ +Y + +
Sbjct: 198 MEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVG 257
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A VF M R V+WN +I G+A GF E + F+ M+ K F AL CS
Sbjct: 258 DAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCS 317
Query: 275 -----------HAGLIEDGLQY 285
H G++++G ++
Sbjct: 318 QQRELNFTKQLHCGVVKNGYEF 339
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 117/278 (42%), Gaps = 23/278 (8%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
I V WTS +S + R+G E +M++ G NP+ TF T+L AD
Sbjct: 167 IKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQ 226
Query: 95 ----------SNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDY 142
V AL+ MY K + A VFD V+R W ++ G+ +
Sbjct: 227 VHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGF 286
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+ E + F M+++GV+ + L +C+ R L +H V K ++ +
Sbjct: 287 YLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTA 346
Query: 203 LMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
LM YS+ ++ A ++F +V+W ++I GF N +A++ F M + +
Sbjct: 347 LMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRP 406
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299
+ +++ L + L + Q I+K Y P +
Sbjct: 407 NHFTYSTVLAGKPSSLLSQLHAQ---IIKAYYEKVPSV 441
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 81/168 (48%)
Query: 124 MRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
++ + LL F + ++ EAL F+ + SG+ D LT+ L VC + +G
Sbjct: 66 LKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQ 125
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H K F ++V V +L+D+Y + E R +F M + +VSW S++ G+A NG
Sbjct: 126 VHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGL 185
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
E + N MQ + +F L A + +IE G+Q ++ K
Sbjct: 186 NDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVK 233
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 151/282 (53%), Gaps = 22/282 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRL-YGTNPSHITFVTLLSGCADFPS--------- 95
V W S +S + + G EA F R+R G P ++ V++L C +
Sbjct: 184 VSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEG 243
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N + +AL+ MY+K G + + +FD M DF W A ++ + + +E
Sbjct: 244 FVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADE 303
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F M+ +GV+P+ +T+ +VL+ CA++ L +G M Y + + ++ V L+D
Sbjct: 304 AISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALID 363
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM--QKGVFKTDE 263
+Y++ G +E A++VF M ++ SWN++I A +G EAL F M + G + ++
Sbjct: 364 MYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPND 423
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++F L+AC HAGL+++G + FD+M ++ + P+IEH+ C+
Sbjct: 424 ITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCM 465
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAK 110
+ +M+ +P++ TF + CA+ N+ +++ MY +
Sbjct: 105 YHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFR 164
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF-RVMQISGVEPDYLTIIS 167
G +A VFD + D W +LL+G+ K + EA+E F R+ + SG EPD ++++S
Sbjct: 165 CGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVS 224
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
VL C + L +G W+ +V ++ K N + + L+ +YS+ G + +R++F M R
Sbjct: 225 VLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRD 284
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
++WN+ I +A NG EA+ F+ M++ ++V+ T L+AC+ G ++ G Q
Sbjct: 285 FITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQ 341
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L + M+ + P+ T V CAN+ + + H V K ++ N+++ +
Sbjct: 102 LHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTM 161
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVS 265
Y R G AR+VF + ++ LVSWNS++ G+A GF EA+E F L ++ F+ DE+S
Sbjct: 162 YFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMS 221
Query: 266 FTGALTACSHAGLIEDG 282
L AC G +E G
Sbjct: 222 LVSVLGACGELGDLELG 238
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 133/252 (52%), Gaps = 24/252 (9%)
Query: 56 CRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMD 115
C+ GC+ +A F MR NV T+++ Y GR+D
Sbjct: 193 CKCGCLDKARAVFDSMR----------------------DKNVKCWTSMVFGYVSTGRID 230
Query: 116 LATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173
A V+F+ ++ WTA++NG+V+ + F+EALE FR MQ +G+ PD ++S+L CA
Sbjct: 231 EARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCA 290
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
L G W+H Y+ + + V L+D+Y++ GCIE A +VF + +R SW S
Sbjct: 291 QTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTS 350
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
+I G A+NG G AL+ + M+ + D ++F LTAC+H G + +G + F M + +
Sbjct: 351 LIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERH 410
Query: 294 RVSPQIEHHGCI 305
V P+ EH C+
Sbjct: 411 NVQPKSEHCSCL 422
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 108/217 (49%), Gaps = 35/217 (16%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM-QIS 156
VS +L+ MYA G++++ VFD M R W L++ +V FE+A+ F+ M Q S
Sbjct: 83 VSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQES 142
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
++ D TI+S L+ C+ ++ L IG ++R+V + F+ +VR+ N L+D++ + GC++ A
Sbjct: 143 NLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTE-FEMSVRIGNALVDMFCKCGCLDKA 201
Query: 217 RQVFQRMHKRTLVSWNSIIVGFA--------------------------VNGFV-----G 245
R VF M + + W S++ G+ +NG+V
Sbjct: 202 RAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFD 261
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
EALE F MQ + D LT C+ G +E G
Sbjct: 262 EALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQG 298
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 8/167 (4%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
+ +L F + L F ++ G+ PD T+ VL +R + G +H Y
Sbjct: 13 MYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYA 72
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K + + V N+LM +Y+ G IE +VF M +R +VSWN +I + NG +A+
Sbjct: 73 VKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAI 132
Query: 249 EYFNLM-QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
F M Q+ K DE + L+ACS L+ +I ++IYR
Sbjct: 133 GVFKRMSQESNLKFDEGTIVSTLSACS-------ALKNLEIGERIYR 172
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 20/209 (9%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------ 92
+S + V WT+ ++ + + EA F M+ G P + V+LL+GCA
Sbjct: 238 RSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQ 297
Query: 93 -------FPSNNV----MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
N V +V TAL+DMYAK G ++ A VF ++ D WT+L+ G
Sbjct: 298 GKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAM 357
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-HRYVPKQDFKDNVR 198
AL+ + M+ GV D +T ++VL C + + G + H + + +
Sbjct: 358 NGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSE 417
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
C+ L+D+ R G ++ A ++ +M +
Sbjct: 418 HCSCLIDLLCRAGLLDEAEELIDKMRGES 446
>gi|414887968|tpg|DAA63982.1| TPA: hypothetical protein ZEAMMB73_972364 [Zea mays]
Length = 700
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 152/282 (53%), Gaps = 23/282 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLLSGCADFPS--------- 95
V W S + + R+G + E M G P+ +T +L+ C D +
Sbjct: 184 VSWNSMVKAYERAGMVAEVEGMLRSMVTEGAVAPNGVTLAVVLTACRDAGNLVLGRWVEE 243
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ ++ +AL+ MY K G M A VFD +R D W A++ G+ + E
Sbjct: 244 WVRSAGMEVDSLIGSALVGMYEKCGEMAEARRVFDGIRHKDVVAWNAMITGYAQNGMSNE 303
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F M+ +G+ PD +T++ VL+ CA V L +G+ + Y ++ +NV V L+D
Sbjct: 304 AIALFHSMREAGLCPDKITLVGVLSSCAAVGALKLGVELDTYAMRRGLYNNVYVGTALVD 363
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM--QKGVFKTDE 263
+Y++ G +E A VF +M + SWN++I G A NG +A++ F LM +KG+ + D+
Sbjct: 364 MYAKCGDLEKATHVFGKMPFKNEASWNALICGLAFNGRGYDAIQQFELMRDEKGL-QPDD 422
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++F G L+AC HAGL+E G Q F+ + ++++ P+IEH+ CI
Sbjct: 423 ITFIGVLSACVHAGLLEYGRQLFNSLTPVFKIIPRIEHYSCI 464
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
V PD T+ +L A + H + K D+ ++L+ +YS AR
Sbjct: 113 VRPDAYTLPFLLLAAARCPAPALARSAHALLEKIGLGDHDHTVHSLITMYSCLDDHLAAR 172
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTACSHA 276
+VF + R +VSWNS++ + G V E +++ +G + V+ LTAC A
Sbjct: 173 RVFDGISHRDVVSWNSMVKAYERAGMVAEVEGMLRSMVTEGAVAPNGVTLAVVLTACRDA 232
Query: 277 G 277
G
Sbjct: 233 G 233
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 129/211 (61%), Gaps = 3/211 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+++ V T+L++ Y K + A VF+ M R WTA+++G + +EA+E FR M
Sbjct: 125 SSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREM 184
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q +G++PD +T++SV++ CA L IG W+H Y+ K ++ + L+D+Y++ GCI
Sbjct: 185 QKAGIQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALVDMYAKCGCI 244
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A+QVF M + +W+S+I+GFA +G +A++ F M + D V+F L+AC
Sbjct: 245 ERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSAC 304
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
+H GL+ G +++ +M + + + P +EH+GC
Sbjct: 305 AHGGLVSRGRRFWSLMLE-FGIEPSVEHYGC 334
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 99/189 (52%), Gaps = 4/189 (2%)
Query: 109 AKFGRMDLATVVFDVMRGCDF--WTALLNGFVK-RDYFEEALEYFRVMQISGVE-PDYLT 164
+ FG ++ A VF + + W +L+ G+ + +E + F+ + +G P+ T
Sbjct: 35 SPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFT 94
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
+ VL CA V G GL +H +V K F ++ V +L++ Y + I FAR+VF+ M
Sbjct: 95 LAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMP 154
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
R LV+W ++I G A G V EA+E F MQK + D ++ ++AC+ AG ++ G
Sbjct: 155 VRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGCW 214
Query: 285 YFDIMKKIY 293
++K +
Sbjct: 215 LHAYIEKYF 223
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 20/212 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
V WT+ IS H R G + EA F M+ G P +T V+++S CA
Sbjct: 159 VAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGCWLHAY 218
Query: 92 ---DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
F ++ +STAL+DMYAK G ++ A VF M + W++++ GF ++A
Sbjct: 219 IEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDA 278
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
++ F+ M + V PD++T ++VL+ CA+ + G + + + +V +D+
Sbjct: 279 IDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDL 338
Query: 207 YSRFGCIEFARQVFQRMH-KRTLVSWNSIIVG 237
R G +E A ++ M +W S+++G
Sbjct: 339 LCRSGLVEEAYRITTTMKIPPNAATWRSLLMG 370
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 125/204 (61%), Gaps = 2/204 (0%)
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L+ YA+ GR+ A +FD M R W+A++NG+V+ EAL F MQ GV PD
Sbjct: 283 LITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPD 342
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
++ VL CA + L G W+H Y+ + + V + L+D+Y++ G ++ A +VF+
Sbjct: 343 DTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFK 402
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
M ++ +++W ++I G A++G EALE F+ M++ K D+++F GAL AC+H GL++
Sbjct: 403 VMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDK 462
Query: 282 GLQYFDIMKKIYRVSPQIEHHGCI 305
G + FD M + Y + P+IEH+GC+
Sbjct: 463 GRELFDSMVRKYGIKPKIEHYGCM 486
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 21/214 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF----------- 93
V W++ ++ + ++G EA F RM+ G P V +L+ CA
Sbjct: 308 AVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHG 367
Query: 94 --PSNNVMVS----TALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+NN+ ++ TAL+DMYAK G M LA VF VM+ + WT ++ G E
Sbjct: 368 YLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSE 427
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-HRYVPKQDFKDNVRVCNTLM 204
ALE F M+ GV+PD + I L C + + G + V K K + ++
Sbjct: 428 ALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMV 487
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVG 237
D+ +R G + AR++ ++M K + W +++ G
Sbjct: 488 DLLARNGLLNEAREMVEKMPMKPDALIWGALMAG 521
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
NTL+ Y+R G + AR +F M R VSW++++ G+ G EAL F MQ +
Sbjct: 281 NTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVR 340
Query: 261 TDEVSFTGALTACSHAGLIEDG 282
D+ G L AC+ G++E G
Sbjct: 341 PDDTVLVGVLAACAQLGVLEQG 362
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 149/275 (54%), Gaps = 19/275 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------D 92
V W S IS + G EA F M I++ T+L G +
Sbjct: 188 VSWNSMISGLAKGGLYEEARKVFDEM----PEKDGISWNTMLDGYVKVGKMDDAFKLFDE 243
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P NV+ + ++ Y K G M++A ++FD M + WT +++GF ++ EA+ F
Sbjct: 244 MPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLF 303
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M+ + ++ D T++S+L CA LG+G +H + +FK + N L+D+Y++
Sbjct: 304 DQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKC 363
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + A VF + + +VSWN+++ G A++G +ALE F M++ F ++V+ G L
Sbjct: 364 GRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVL 423
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
AC+HAGLI+DG++YF M++ Y + P++EH+GC+
Sbjct: 424 CACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCM 458
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 9/205 (4%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMR--GCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ V L+ ++ +M LAT F+ ++ + ++ +A F MQ
Sbjct: 51 DLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQ 110
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC-- 212
G D T +L VC L + +H + K F +V V N+L+D YS+ G
Sbjct: 111 RDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCG 170
Query: 213 IEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
I A+++F M +R +VSWNS+I G A G EA + F+ M + D +S+ L
Sbjct: 171 ISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMP----EKDGISWNTMLD 226
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVS 296
G ++D + FD M + VS
Sbjct: 227 GYVKVGKMDDAFKLFDEMPERNVVS 251
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 131/214 (61%), Gaps = 3/214 (1%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
+ +V + A+L+ YAK G + A +F+ M R WTAL+ G+ + + +A+ FR
Sbjct: 145 TGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRR 204
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSRFG 211
MQ+ VEPD + ++ L CA + L +G W+ Y+ + N+ + N L+D+Y++ G
Sbjct: 205 MQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSG 264
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
I+ A QVF+ M+ +T+++W ++I G A++G EALE F+ M++ K ++++F L+
Sbjct: 265 DIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILS 324
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSH GL++ G YF+ M Y + P+IEH+GC+
Sbjct: 325 ACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCM 358
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 22/219 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ I+ + ++ +A F RM+L P I + L+ CA +
Sbjct: 180 ISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHY 239
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
N+ ++ AL+DMYAK G + A VF+ M + WT ++ G E
Sbjct: 240 IDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTE 299
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW-MHRYVPKQDFKDNVRVCNTLM 204
ALE F M+ + V+P+ +T I++L+ C++V + G W +R + + + + ++
Sbjct: 300 ALEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMI 359
Query: 205 DVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNG 242
D+ R G ++ A+ + +M + V W S++ +G
Sbjct: 360 DLLGRAGHLKEAQTLLAQMPFEPNAVIWGSLLAACNTHG 398
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 35/165 (21%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMH----RYVPKQDFK-------------- 194
+Q++G+ PD + L ++ G +H R+ D
Sbjct: 69 IQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGS 128
Query: 195 -----------------DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+V + N +++ Y++ G + AR +F+RM +R ++SW ++I G
Sbjct: 129 GCICDARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITG 188
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+A +A+ F MQ + DE++ ALTAC+ G +E G
Sbjct: 189 YAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELG 233
>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
gi|194689034|gb|ACF78601.1| unknown [Zea mays]
gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
Length = 606
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 137/257 (53%), Gaps = 20/257 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADF-----------------PSNNVMVSTALLDMYAK 110
F RM G P TFV+LL CA + + V L++MYA+
Sbjct: 121 FVRMLEEGVAPDTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAE 180
Query: 111 FGRMDLATVVFDVMRG-CDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G A V F G C + A++ V+ EAL FR MQ G+ P +T+ISV
Sbjct: 181 CGDARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISV 240
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ CA + L +G W+H YV K V+V L+D+Y++ G +E A VFQ M R
Sbjct: 241 LSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDR 300
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
+W+ +IV +A +G+ EA+ F M+K K D+++F G L ACSH+GL+ +GL+YFD
Sbjct: 301 QAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDD 360
Query: 289 MKKIYRVSPQIEHHGCI 305
MK + + P I+H+GC+
Sbjct: 361 MKD-HGIVPGIKHYGCV 376
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 30/227 (13%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
D V + + I+ RS EA + F M+ G NP+ +T +++LS CA +
Sbjct: 197 DCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWL 256
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYF 143
+ V VSTAL+DMYAK G ++ A VF M D W+ ++ + Y
Sbjct: 257 HDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGYG 316
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN-----VR 198
EA+ F M+ G++PD +T + +L C++ + GL RY D KD+ ++
Sbjct: 317 REAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGL---RYF--DDMKDHGIVPGIK 371
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV 244
+ D+ +R G +E A + + T + W +++ +G V
Sbjct: 372 HYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDV 418
>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Brachypodium distachyon]
Length = 1206
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 145/284 (51%), Gaps = 19/284 (6%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------ 94
T D + W+ ISR+ + +A F RM +P+ + ++L CA+ P
Sbjct: 694 TNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGK 753
Query: 95 -----------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRD 141
+ + V AL+D+YAK M+ + +F +R + W ++ G+ K
Sbjct: 754 QIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSG 813
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
+ E AL FR M+ + V +T SVL CA+ ++ +H + K F + V N
Sbjct: 814 FGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSN 873
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
+L+D Y++ GCI AR++F+ + + LVSWN+II G+AV+G A E F++M K K
Sbjct: 874 SLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKA 933
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++++F L+ C GL+ GL FD M+ + + P +EH+ CI
Sbjct: 934 NDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCI 977
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 19/266 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS----------------- 88
V + + + H G EA+ F R+R G + T+L
Sbjct: 497 VSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHAC 556
Query: 89 GCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
C N V +AL+D Y+ G + A VFD + G D WTA+++ + + D E
Sbjct: 557 ACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENT 616
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F M+++ + + + SVL + ++ +G +H K + V L+D+
Sbjct: 617 LQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDM 676
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G IE AR F+ + ++ W+ +I +A +A E F M + +E S
Sbjct: 677 YAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSL 736
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKI 292
+ L AC++ L++ G Q + KI
Sbjct: 737 SSVLQACANMPLLDLGKQIHNHAIKI 762
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 2/178 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ + LL+MY K G A VFD + R + L+ G R FEEA F+ ++
Sbjct: 464 DLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLR 523
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
G E + + +VL + + TLG+ +H K N V + L+D YS G +
Sbjct: 524 WEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVS 583
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
AR+VF + + V+W +++ ++ N L+ F+ M+ V K + + T L A
Sbjct: 584 DARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRA 641
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 129/211 (61%), Gaps = 3/211 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+++ V T+L++ Y K + A VF+ M R WTA+++G + +EA+E FR M
Sbjct: 125 SSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREM 184
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q +G++PD +T++SV++ CA L IG W+H Y+ K ++ + L+D+Y++ GCI
Sbjct: 185 QKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCI 244
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A+QVF M + +W+S+I+GFA +G +A++ F M + D V+F L+AC
Sbjct: 245 ERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSAC 304
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
+H GL+ G +++ +M + + + P +EH+GC
Sbjct: 305 AHGGLVSRGRRFWSLMLE-FGIEPSVEHYGC 334
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 4/178 (2%)
Query: 109 AKFGRMDLATVVFDVMRGCDF--WTALLNGFVK-RDYFEEALEYFRVMQISGVE-PDYLT 164
+ FG ++ A VF + + W +L+ G+ + +E + F+ + +G P+ T
Sbjct: 35 SPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFT 94
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
+ VL CA V G GL +H +V K F ++ V +L++ Y + I FAR+VF+ M
Sbjct: 95 LAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMP 154
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
R LV+W ++I G A G V EA+E F MQK + D ++ ++AC+ AG ++ G
Sbjct: 155 VRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIG 212
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 20/212 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V WT+ IS H R G + EA F M+ G P +T V+++S CA
Sbjct: 159 VAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAY 218
Query: 93 ----FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
F ++ +STAL+DMYAK G ++ A VF M + W++++ GF ++A
Sbjct: 219 IEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDA 278
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
++ F+ M + V PD++T ++VL+ CA+ + G + + + +V +D+
Sbjct: 279 IDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDL 338
Query: 207 YSRFGCIEFARQVFQRMH-KRTLVSWNSIIVG 237
R G +E A ++ M +W S+++G
Sbjct: 339 LCRSGLVEEAYRITTTMKIPPNAATWRSLLMG 370
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 83/205 (40%), Gaps = 17/205 (8%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVS 101
+ T W+S I G +A F +M P H+TF+ +LS CA
Sbjct: 256 VKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAH--------- 306
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L+ +F + L F + + + ++ + EEA +R+ + P+
Sbjct: 307 GGLVSRGRRFWSLMLE---FGIEPSVEHYGCKVDLLCRSGLVEEA---YRITTTMKIPPN 360
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDF--KDNVRVCNTLMDVYSRFGCIEFARQV 219
T S+L C + L +G + RY+ + + +N + + L S++ + R+V
Sbjct: 361 AATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKV 420
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFV 244
+ + + +SI V V+ FV
Sbjct: 421 MKEKCIKPVPGCSSIEVDGVVHEFV 445
>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 151/280 (53%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSG-CILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
+ WT+ I+ + +SG C EA F +M P+H +F ++L C +
Sbjct: 319 MSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 378
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
++ V +L+ MYA+ GRM+ A FD++ + + A+++G+ K EE
Sbjct: 379 YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 438
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A F + +G+ T S+L+ A++ +G G +H + K +K N +CN L+
Sbjct: 439 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALIS 498
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YSR G IE A QVF M R ++SW S+I GFA +GF ALE F+ M + K +E++
Sbjct: 499 MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 558
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ L+ACSH G+I +G ++F+ M K + + P++EH+ C+
Sbjct: 559 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACM 598
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 125/273 (45%), Gaps = 27/273 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V W++ +S + +A F M G P+ F ++ C++
Sbjct: 112 VSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGF 171
Query: 93 -----FPSNNVMVSTALLDMYAKFGRMDLATV--VFDVM--RGCDFWTALLNGFVKRDYF 143
+ +V V L+DM+ K G DL + VFD M R WT ++ F +
Sbjct: 172 VVKTGYLEADVCVGCELIDMFVK-GSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCA 230
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
+A++ F M++SG PD T SVL+ C + L +G +H V + +V V +L
Sbjct: 231 RDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSL 290
Query: 204 MDVYSRF---GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG-EALEYFNLMQKGVF 259
+D+Y++ G ++ +R+VF++M + ++SW +II + +G EA+E F M G
Sbjct: 291 VDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHI 350
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
+ + SF+ L AC + G Q + K+
Sbjct: 351 RPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 383
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 97/191 (50%), Gaps = 5/191 (2%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEALEYFRVMQI 155
+V L+ +Y+K G + A ++F+ M R W+A+++ F +A+ F M
Sbjct: 80 VVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE 139
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSR-FGCI 213
G P+ +V+ C+N +G ++ +V K + + +V V L+D++ + G +
Sbjct: 140 LGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDL 199
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A +VF +M +R LV+W +I FA G +A++ F M+ + D +++ L+AC
Sbjct: 200 GSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 259
Query: 274 SHAGLIEDGLQ 284
+ GL+ G Q
Sbjct: 260 TELGLLALGKQ 270
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
A +M PD T +L C R +G +HR + + + + V NT
Sbjct: 25 LHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNT 84
Query: 203 LMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+ +YS+ G E AR +F+ M +KR LVSW++++ FA N +A+ F M + F
Sbjct: 85 LISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP 144
Query: 262 DEVSFTGALTACSHA 276
+E F + ACS+A
Sbjct: 145 NEYCFAAVIRACSNA 159
>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
Length = 967
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 124/208 (59%), Gaps = 2/208 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVM 153
N+V V ++L+DMYA +MD + VFD CD W ++L G+ + EEAL FR M
Sbjct: 520 NDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRM 579
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+GV P +T S++ N+ L +G +H Y+ + F DN+ + ++L+D+Y + G +
Sbjct: 580 LQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNV 639
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ AR+VF + +VSW ++I+G+A++G EA F M+ G K + ++F LTAC
Sbjct: 640 DIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTAC 699
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEH 301
SHAGL+++G +YF+ M Y P +EH
Sbjct: 700 SHAGLVDNGWKYFNSMSNQYGFVPSLEH 727
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 2/167 (1%)
Query: 120 VFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
VFD M R W L+ G + +EAL R M G PD T+ +VL + A
Sbjct: 443 VFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECAD 502
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+ G+ +H Y K F ++V V ++L+D+Y+ ++++ +VF V WNS++ G
Sbjct: 503 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAG 562
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+A NG V EAL F M + + V+F+ + A + L+ G Q
Sbjct: 563 YAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQ 609
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 22/225 (9%)
Query: 32 SIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA 91
S++ +S S D V W S ++ + ++G + EA F RM G P +TF +L+
Sbjct: 541 SMKVFDSFSDCDA-VLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFG 599
Query: 92 DFP-----------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTA 132
+ ++N+ +S++L+DMY K G +D+A VF+ ++ D WTA
Sbjct: 600 NLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTA 659
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ- 191
++ G+ EA F M++ V+P+++T ++VL C++ + G + Q
Sbjct: 660 MIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQY 719
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
F ++ C L D R G ++ A M K T W++++
Sbjct: 720 GFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLL 764
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 127/212 (59%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
N++ A++ YAK G + A +F+ M D WT+++ G+ EA++ F+ M
Sbjct: 278 KNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEM 337
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+S V+PD +T+ + L+ CA++ +L G +H Y+ K D K +V V N+L+D+Y + G +
Sbjct: 338 MVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVV 397
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A QVF M R VSW SII G AVNGF AL F+ M K +F G L AC
Sbjct: 398 EKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLAC 457
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+H GL++ G+++F M+ YR++P+++H+GC+
Sbjct: 458 AHVGLVDKGVEHFKSMENTYRLAPEMKHYGCV 489
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 137/298 (45%), Gaps = 50/298 (16%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
T + W I +S +A + M G SH+TF+ L CA
Sbjct: 77 TLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVR 136
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+ + VS AL+ MY FG + +A VFD M R W +++ G+ + + F+
Sbjct: 137 VHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFK 196
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+ L+ FR MQ V D +T++ ++ + +G ++ +Y+ + ++ + NTL+
Sbjct: 197 KVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLI 256
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV-------------------- 244
D+Y R G I+FA +VF +M ++ +VSWN++I+G+A G +
Sbjct: 257 DMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTS 316
Query: 245 -----------GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
EA++ F M + K DE++ AL+AC+H G ++ G D ++K
Sbjct: 317 MIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRK 374
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 20/199 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
+ WTS I + + EA F M + P IT T LS CA S
Sbjct: 311 VISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHD 370
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
++V V +L+DMY K G ++ A VF+ M+ D WT++++G + E
Sbjct: 371 YIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAES 430
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLM 204
AL F M G+ P + T + VL CA+V + G+ + + ++ ++
Sbjct: 431 ALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVV 490
Query: 205 DVYSRFGCIEFARQVFQRM 223
D+ R G ++ A ++M
Sbjct: 491 DLLCRSGYLDMAYNFIKKM 509
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 144/281 (51%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN------- 96
T+ W I + S EA F MR G P+++TF LL CA +
Sbjct: 95 ATMPWNFIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFH 154
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+V V L++ Y RM A VFD M R W A++ V+ F+
Sbjct: 155 AIAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMTERTLVSWNAVITACVENFCFD 214
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA++YF M G EPD T++ +L+ CA + L +G W+H V + NV++ +
Sbjct: 215 EAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFV 274
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G + AR VF + ++++ +W+++I+G A +GF EA+E F M + V
Sbjct: 275 DMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANEAIELFTNMTSSPIVPNHV 334
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L ACSHAGL++ YF++M+++Y + P + H+G +
Sbjct: 335 TFIGVLCACSHAGLVDKSYHYFNLMERVYGIKPMMIHYGSM 375
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 152/309 (49%), Gaps = 50/309 (16%)
Query: 47 QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------- 95
W + + +A F R+R + +P H T +L C+
Sbjct: 80 HWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYV 139
Query: 96 ------NNVMVSTALLDMYAKFGRMDLATVVFDVM------------------------- 124
+N+ + ++ +YA G + +A VFD M
Sbjct: 140 EKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAY 199
Query: 125 --------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR 176
R WT+++ G+ + +EA++ F M+ +G+ P+ +T+++VL CA++
Sbjct: 200 KLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMG 259
Query: 177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIV 236
L +G +H + + ++ N+RVCNTL+D+Y + GC+E A ++F M +RT+VSW+++I
Sbjct: 260 NLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIA 319
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
G A +G +AL FN M K + V+F G L ACSH G++E G +YF M + Y +
Sbjct: 320 GLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIV 379
Query: 297 PQIEHHGCI 305
P+IEH+GC+
Sbjct: 380 PRIEHYGCM 388
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 117 ATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A ++F ++ + W L F + D +A+ F ++ + PD+ T VL C+
Sbjct: 66 AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN-- 232
+ + G +H YV K + N+ + N ++ +Y+ G I AR+VF +M +R +++WN
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185
Query: 233 -----------------------------SIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
S+I G+A G EA++ F M+ +E
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245
Query: 264 VSFTGALTACSHAGLIEDGLQYFD 287
V+ L AC+ G + G + D
Sbjct: 246 VTVVAVLVACADMGNLVLGRRIHD 269
>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 151/280 (53%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSG-CILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
+ WT+ I+ + +SG C EA F +M P+H +F ++L C +
Sbjct: 301 MSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 360
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
++ V +L+ MYA+ GRM+ A FD++ + + A+++G+ K EE
Sbjct: 361 YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 420
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A F + +G+ T S+L+ A++ +G G +H + K +K N +CN L+
Sbjct: 421 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALIS 480
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YSR G IE A QVF M R ++SW S+I GFA +GF ALE F+ M + K +E++
Sbjct: 481 MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 540
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ L+ACSH G+I +G ++F+ M K + + P++EH+ C+
Sbjct: 541 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACM 580
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 125/273 (45%), Gaps = 27/273 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V W++ +S + +A F M G P+ F ++ C++
Sbjct: 94 VSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGF 153
Query: 93 -----FPSNNVMVSTALLDMYAKFGRMDLATV--VFDVM--RGCDFWTALLNGFVKRDYF 143
+ +V V L+DM+ K G DL + VFD M R WT ++ F +
Sbjct: 154 VVKTGYLEADVCVGCELIDMFVK-GSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCA 212
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
+A++ F M++SG PD T SVL+ C + L +G +H V + +V V +L
Sbjct: 213 RDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSL 272
Query: 204 MDVYSRF---GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG-EALEYFNLMQKGVF 259
+D+Y++ G ++ +R+VF++M + ++SW +II + +G EA+E F M G
Sbjct: 273 VDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHI 332
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
+ + SF+ L AC + G Q + K+
Sbjct: 333 RPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 365
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 97/191 (50%), Gaps = 5/191 (2%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEALEYFRVMQI 155
+V L+ +Y+K G + A ++F+ M R W+A+++ F +A+ F M
Sbjct: 62 VVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE 121
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSR-FGCI 213
G P+ +V+ C+N +G ++ +V K + + +V V L+D++ + G +
Sbjct: 122 LGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDL 181
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A +VF +M +R LV+W +I FA G +A++ F M+ + D +++ L+AC
Sbjct: 182 GSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 241
Query: 274 SHAGLIEDGLQ 284
+ GL+ G Q
Sbjct: 242 TELGLLALGKQ 252
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
A +M PD T +L C R +G +HR + + + + V NT
Sbjct: 7 LHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNT 66
Query: 203 LMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+ +YS+ G E AR +F+ M +KR LVSW++++ FA N +A+ F M + F
Sbjct: 67 LISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP 126
Query: 262 DEVSFTGALTACSHA 276
+E F + ACS+A
Sbjct: 127 NEYCFAAVIRACSNA 141
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 152/309 (49%), Gaps = 50/309 (16%)
Query: 47 QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------- 95
W + + +A F R+R + +P H T +L C+
Sbjct: 80 HWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYV 139
Query: 96 ------NNVMVSTALLDMYAKFGRMDLATVVFDVM------------------------- 124
+N+ + ++ +YA G + +A VFD M
Sbjct: 140 EKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAY 199
Query: 125 --------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR 176
R WT+++ G+ + +EA++ F M+ +G+ P+ +T+++VL CA++
Sbjct: 200 KLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMG 259
Query: 177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIV 236
L +G +H + + ++ N+RVCNTL+D+Y + GC+E A ++F M +RT+VSW+++I
Sbjct: 260 NLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIA 319
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
G A +G +AL FN M K + V+F G L ACSH G++E G +YF M + Y +
Sbjct: 320 GLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIV 379
Query: 297 PQIEHHGCI 305
P+IEH+GC+
Sbjct: 380 PRIEHYGCM 388
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 117 ATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A ++F ++ + W L F + D +A+ F ++ + PD+ T VL C+
Sbjct: 66 AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN-- 232
+ + G +H YV K + N+ + N ++ +Y+ G I AR+VF +M +R +++WN
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185
Query: 233 -----------------------------SIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
S+I G+A G EA++ F M+ +E
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245
Query: 264 VSFTGALTACSHAGLIEDGLQYFD 287
V+ L AC+ G + G + D
Sbjct: 246 VTVVAVLVACADMGNLVLGRRIHD 269
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 24/208 (11%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
T V W++ I+ G +A F +M G P+ +TF+ +L C+
Sbjct: 310 TVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSH----------- 358
Query: 104 LLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
+ M K GR A++ D ++ + + +++ F + +EA E+ M I+ P+
Sbjct: 359 -MGMVEK-GRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIA---PN 413
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDNVRVCNTLMDVYSRFGCIEFARQVF 220
+ ++L C + + + R++ K D D V L ++Y+ G E +V
Sbjct: 414 GVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYV--VLSNIYAEAGRWEDVARVR 471
Query: 221 QRMHKRTL---VSWNSIIVGFAVNGFVG 245
+ M R + W+SI+V V FV
Sbjct: 472 KLMRDRGVKKTPGWSSIMVEGVVYNFVA 499
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 139/260 (53%), Gaps = 24/260 (9%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDM 107
WT+ IS H R G + A F M P NV A++D
Sbjct: 145 WTTMISAHVRDGDMASAGRLFDEM----------------------PEKNVATWNAMIDG 182
Query: 108 YAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
Y K G + A +F+ M D WT ++N + + ++E + F + G+ PD +T+
Sbjct: 183 YGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTM 242
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
+V++ CA++ L +G +H Y+ Q F +V + ++L+D+Y++ G I+ A VF ++
Sbjct: 243 TTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQT 302
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
+ L WN II G A +G+V EAL F M++ + + V+F LTAC+HAG IE+G ++
Sbjct: 303 KNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRW 362
Query: 286 FDIMKKIYRVSPQIEHHGCI 305
F M + Y ++PQ+EH+GC+
Sbjct: 363 FMSMVQDYCIAPQVEHYGCM 382
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 64/127 (50%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
+ AL+ G V Y E+AL ++ M + V P + S++ C + G +H +V
Sbjct: 44 FNALIRGCVHCCYSEQALVHYMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVW 103
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
K F +V V TL++ YS FG + +R+VF M +R + +W ++I +G + A
Sbjct: 104 KHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGR 163
Query: 250 YFNLMQK 256
F+ M +
Sbjct: 164 LFDEMPE 170
>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
Length = 864
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-------- 96
+V W + I+ ++ C + M G P T+ ++L CA S
Sbjct: 419 SVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHG 478
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ VS+ ++DMY K G + A + D + G + W ++++GF EE
Sbjct: 479 KAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEE 538
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A +F M GV+PD+ T +VL+ CAN+ T+ +G +H + KQ+ + + +TL+D
Sbjct: 539 AQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVD 598
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + + +F++ K VSWN++I G+A++G EALE F MQ+ + +
Sbjct: 599 MYAKCGNMPDSLLMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHAT 658
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L ACSH GL++DG QYF +M Y++ PQ+EH C+
Sbjct: 659 FVAVLRACSHVGLLDDGCQYFHLMTSRYKLVPQLEHFACM 698
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 120/263 (45%), Gaps = 29/263 (11%)
Query: 45 TVQWTSSISRHCRSGCILEA----ALE-FTRMRLYGTNPSHITFVTLLSGCADFP----- 94
+V W ++I+ GC+ +E F +M+ G S + + CA P
Sbjct: 217 SVSWGAAIA-----GCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTA 271
Query: 95 ------------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKR 140
S++ +V TA++D+YAK G + A F + + A++ G V+
Sbjct: 272 RQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRT 331
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
EA++ F+ M SGV D +++ V + CA V+ GL +H K F +V V
Sbjct: 332 GLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVR 391
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N ++D+Y + + A VFQ M +R VSWN+II N + + + N M + +
Sbjct: 392 NAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGME 451
Query: 261 TDEVSFTGALTACSHAGLIEDGL 283
D+ ++ L AC+ +E GL
Sbjct: 452 PDDFTYGSVLKACAGLQSLEYGL 474
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 114/295 (38%), Gaps = 25/295 (8%)
Query: 15 LPHQQNRNQNLKKRPQISIQTNNSKSTIDTT------VQWTSSISRHCRSGCILEAALEF 68
+PH+ + N + ++ +++ T V W + IS +C+ G +
Sbjct: 80 MPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLS 139
Query: 69 TRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTALLDMYAKF 111
M G T LL C +V +AL+DMY K
Sbjct: 140 MEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKC 199
Query: 112 GRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
+D A F M R W A + G V+ + + +E F MQ G+ S
Sbjct: 200 RSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAF 259
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
CA + L +H + K F + V ++DVY++ G + AR+ F + +
Sbjct: 260 RSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVE 319
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ N+++VG G EA++ F M + D +S +G +AC+ GLQ
Sbjct: 320 TCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQ 374
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 9/205 (4%)
Query: 72 RLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF-- 129
R GT +H F T+ P + + +L Y G D A +F M D
Sbjct: 66 RCGGTAHAHGVFDTM-------PHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVS 118
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W L++G+ + F ++ M GV D T+ +L C + L +G+ +H
Sbjct: 119 WNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAV 178
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
K + +VR + L+D+Y + ++ A + F M +R VSW + I G N +E
Sbjct: 179 KTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGME 238
Query: 250 YFNLMQKGVFKTDEVSFTGALTACS 274
F MQ+ + ++ A +C+
Sbjct: 239 LFVQMQRLGLGVSQPAYASAFRSCA 263
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 22/204 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V W + I + G LEA F RM+ P+H TFV +L C+ LL
Sbjct: 622 VSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACS---------HVGLL 672
Query: 106 DMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
D ++ L T + ++ + + +++ + +EALE+ R M I E D +
Sbjct: 673 DDGCQY--FHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPI---EADAVVW 727
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC---IEFARQVFQ- 221
++L++C + + + V + D D+ V L +VY+ G + R++ +
Sbjct: 728 KTLLSICKIRQDVEVAETAASNVLRLD-PDDASVYILLSNVYAGSGKWVDVSRTRRLMRQ 786
Query: 222 -RMHKRTLVSWNSIIVGFAVNGFV 244
R+ K SW I V ++GF+
Sbjct: 787 GRLRKEPGCSW--IEVQSEMHGFL 808
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 164 TIISVLNVCANV--RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
T + +CA+ L G H + F V N L+ +Y+R G A VF
Sbjct: 19 TFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFD 78
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
M R VSWN+++ + G A F M
Sbjct: 79 TMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTM 111
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 156/287 (54%), Gaps = 22/287 (7%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD----- 92
SK++I + WT+ I+ + + E F +M G P+ IT ++L+ C
Sbjct: 289 SKASI---ISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALE 345
Query: 93 -------FPSNN-----VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFV 138
F N ++++TA +DMY K G + A VFD + D W+A+++ +
Sbjct: 346 LGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYA 405
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ + +EA + F M G+ P+ T++S+L +CA +L +G W+H Y+ KQ K ++
Sbjct: 406 QNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMI 465
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
+ + +D+Y+ G I+ A ++F R + WN++I GFA++G ALE F M+
Sbjct: 466 LKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALG 525
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++++F GAL ACSH+GL+++G + F M + +P++EH+GC+
Sbjct: 526 VTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCM 572
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 143/307 (46%), Gaps = 37/307 (12%)
Query: 12 QPFLPH-QQNRNQNLKKRPQ-----ISIQTNNSKSTIDTTVQWTSS--------ISRHCR 57
+P +PH QQ + NL + Q I +N S ++ SS I+ + +
Sbjct: 42 KPNVPHIQQELHINLNETQQLHGHFIKTSSNCSYRVPLAALESYSSNAAIHSFLITSYIK 101
Query: 58 SGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMV 100
+ C +AA + MR T + ++L C PS +V V
Sbjct: 102 NNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFV 161
Query: 101 STALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGV 158
AL+ MY++ G + LA ++FD + D W+ ++ + + +EAL+ R M + V
Sbjct: 162 CNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRV 221
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD--FKDNVRVCNTLMDVYSRFGCIEFA 216
+P + +IS+ +V A + L +G MH YV + K V +C L+D+Y + + +A
Sbjct: 222 KPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYA 281
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTACSH 275
R+VF + K +++SW ++I + + E + F ++ +G+F +E++ + C
Sbjct: 282 RRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMF-PNEITMLSLVKECGT 340
Query: 276 AGLIEDG 282
AG +E G
Sbjct: 341 AGALELG 347
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 144/279 (51%), Gaps = 24/279 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH--ITFVTLLSGC------------ 90
V WTS I+ G IL A L R RL+ P + + ++SG
Sbjct: 265 VVAWTSMIN-----GYILSADLVSAR-RLFDLAPERDVVLWNIMVSGYIEGGDMVEARKL 318
Query: 91 -ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEAL 147
+ P+ +VM +L YA G ++ +F+ M R W AL+ G+ F E L
Sbjct: 319 FXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVL 378
Query: 148 EYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
F R++ S V P+ T+++VL+ CA + L +G W+H Y K NV V N LMD+
Sbjct: 379 GSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDM 438
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G IE A VF+ M + L+SWN++I G A++ +AL F M+ K D ++F
Sbjct: 439 YAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITF 498
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L AC+H GL+EDG YF M Y + PQIEH+GC+
Sbjct: 499 IGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCM 537
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQ 154
N ++ L+ + A RM A +FD + + W ++ G+ + + + E + F M+
Sbjct: 132 NEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMK 191
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ P+ T VL C + L G +H ++ K F+ N V TL+D+YS G +
Sbjct: 192 GMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVG 251
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
A ++F M +R +V+W S+I G+ ++ + A F+L
Sbjct: 252 DAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDL 290
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 28/255 (10%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W S + +S E F +M+ P+ TF +L C +
Sbjct: 167 WNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLI 226
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
N V T L+DMY+ G + A +F M R WT+++NG++ A
Sbjct: 227 KCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARR 286
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F + E D + + N+ + G + R + + +V NT++ Y+
Sbjct: 287 LFDLAP----ERD----VVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYA 338
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVSFT 267
G +E +F+ M +R + SWN++I G+A NG E L F ++ + ++ +
Sbjct: 339 TNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLV 398
Query: 268 GALTACSHAGLIEDG 282
L+AC+ G ++ G
Sbjct: 399 TVLSACARLGALDLG 413
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 129/216 (59%), Gaps = 7/216 (3%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
D S N M+S Y + G + A ++F M D W+A+++G+ + + F EAL
Sbjct: 336 DLISWNSMISG-----YLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALAL 390
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F+ MQ+ GV PD ++S ++ C ++ TL +G W+H Y+ + + NV + TL+D+Y +
Sbjct: 391 FQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMK 450
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
GC+E A +VF M ++ + +WN++I+G A+NG V ++L F M+K +E++F G
Sbjct: 451 CGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGV 510
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L AC H GL+ DG YF+ M +++ I+H+GC+
Sbjct: 511 LGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCM 546
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 36/226 (15%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYFEEALE 148
P N + S +++ ++ + G ++ A +F+ +RG + W+A+++ + + + EEAL
Sbjct: 197 MPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALV 256
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M+ SGV D + ++S L+ C+ V + +G W+H K +D V + N L+ +YS
Sbjct: 257 LFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYS 316
Query: 209 --------------------------------RFGCIEFARQVFQRMHKRTLVSWNSIIV 236
R G I+ A +F M ++ +VSW+++I
Sbjct: 317 SCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMIS 376
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
G+A + EAL F MQ + DE + A++AC+H ++ G
Sbjct: 377 GYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLG 422
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 21/211 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W++ IS + + C EA F M+L+G P V+ +S C +
Sbjct: 369 VSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAY 428
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
NV++ST L+DMY K G ++ A VF M +G W A++ G E++
Sbjct: 429 ISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQS 488
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMD 205
L F M+ +G P+ +T + VL C ++ + G + + + + + N++ ++D
Sbjct: 489 LNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVD 548
Query: 206 VYSRFGCIEFARQVFQRM-HKRTLVSWNSII 235
+ R G ++ A ++ M + +W +++
Sbjct: 549 LLGRAGLLKEAEELIDSMPMAPDVATWGALL 579
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+AL ++++ S +PD T +L CA + G +H + F +V V NTLM
Sbjct: 88 QALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLM 147
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
++Y+ G + AR+VF+ LVSWN+++ G+ G V EA F +G+ + + +
Sbjct: 148 NLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVF----EGMPERNTI 203
Query: 265 SFTGALTACSHAGLIEDGLQYFD 287
+ + G +E + F+
Sbjct: 204 ASNSMIALFGRKGCVEKARRIFN 226
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 132/218 (60%), Gaps = 5/218 (2%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
+ P +V+ TA+L YA G +D A +FD + DF W A+++G+ + EAL+
Sbjct: 179 EMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQL 238
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDNVRVCNTLMDVYS 208
FR M S EPD +T++ VL+ A + T+ G W+H YV + NVRV L+D+Y
Sbjct: 239 FRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYC 298
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFT 267
+ G +E A VF + + +V WN++I G+A++G +ALE F L +G++ TD ++F
Sbjct: 299 KCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTD-ITFI 357
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSH+GL+E+G +F M+ Y + P+IEH+GC+
Sbjct: 358 GLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCM 395
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 82/208 (39%), Gaps = 36/208 (17%)
Query: 108 YAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
YA GR+D + + + F+T+ ++ R L M G+ P T+
Sbjct: 66 YAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTL 125
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV------------------- 206
+ L C R L +G +H Y K + V L+ +
Sbjct: 126 SASLPAC---RGLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPD 182
Query: 207 ------------YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
Y+ G ++ AR++F + ++ + WN++I G+ +G EAL+ F M
Sbjct: 183 PHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRM 242
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ + DEV+ L+A + G +E G
Sbjct: 243 LRSSAEPDEVTVVLVLSAVAQLGTVESG 270
>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
protein [Oryza sativa Japonica Group]
gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 751
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 143/280 (51%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
++ WT+ ++ ++G LEA F RMR G TF ++L+ C +
Sbjct: 243 SITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHA 302
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+NV V +AL+DMY+K + LA VF M R WTA++ G+ + EE
Sbjct: 303 YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEE 362
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F MQ+ G++PD T+ SV++ CAN+ +L G H + V N L+
Sbjct: 363 AVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVT 422
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y + G IE A ++F M VSW +++ G+A G E ++ F M K D V+
Sbjct: 423 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVT 482
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L+ACS AGL+E G YFD M+K + + P +H+ C+
Sbjct: 483 FIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCM 522
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 33/219 (15%)
Query: 100 VSTALLDMYAKFG----------RMDLATVV---------------------FDVM--RG 126
V + L+DMYAK G M+ TVV F +M R
Sbjct: 183 VGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRD 242
Query: 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186
WT ++ G + EAL+ FR M+ GV D T S+L C + L G +H
Sbjct: 243 SITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHA 302
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
Y+ + ++DNV V + L+D+YS+ I A VF+RM R ++SW ++IVG+ N E
Sbjct: 303 YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEE 362
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
A+ F+ MQ K D+ + +++C++ +E+G Q+
Sbjct: 363 AVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQF 401
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 34/227 (14%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ P N+ ALL A + +F M R + AL+ GF +++
Sbjct: 73 EMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQL 132
Query: 150 FR-VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
+R +++ V P +T+ +++ V + + +G +H V + F V + L+D+Y+
Sbjct: 133 YRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYA 192
Query: 209 RFGCIEFARQVFQRMHKRTLV-------------------------------SWNSIIVG 237
+ G I AR+VFQ M +T+V +W +++ G
Sbjct: 193 KMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTG 252
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
NG EAL+ F M+ D+ +F LTAC +E+G Q
Sbjct: 253 LTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQ 299
>gi|222623741|gb|EEE57873.1| hypothetical protein OsJ_08529 [Oryza sativa Japonica Group]
Length = 500
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 162/337 (48%), Gaps = 77/337 (22%)
Query: 25 LKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSG--CILEAALEFTRMRLYGTNPSHIT 82
L + PQ + D WTS+I+R + G AAL P+ +T
Sbjct: 45 LPQPPQNPTPKPRRRPPRDVA-SWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVT 103
Query: 83 FVTLLSGCADFPSN--------------------NVMVSTALLDMY-------------- 108
+T+LS CAD PS+ ++++ST L+ Y
Sbjct: 104 LLTVLSACADSPSSPLARRLALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLALQLFD 163
Query: 109 ------------------AKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALE 148
A G + A VFD M D WTAL++G VK +EA++
Sbjct: 164 AMPVRSAVTYNTVISGPHAGTGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAID 223
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
FR + R G+ R++ + + NVR+ N+L+D+Y+
Sbjct: 224 CFR-----------------RHASGRCRA-GLRHADSRHL--RGLERNVRIANSLIDMYA 263
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
R G +E ARQVF M KRT+VSWNS+IVGFA NG +A+E+F M++ FK D V+FTG
Sbjct: 264 RCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTG 323
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTACSH GL ++GL+Y+D+M+ Y ++ ++EH+GC+
Sbjct: 324 VLTACSHGGLTDEGLRYYDLMRPNYGIAARMEHYGCV 360
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
NV ++ +L+DMYA+ G+++LA VF MR W +++ GF +A+E+F M+
Sbjct: 251 NVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMR 310
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV-PKQDFKDNVRVCNTLMDVYSRFGCI 213
G +PD +T VL C++ GL + + P + ++D+ R G +
Sbjct: 311 REGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRPNYGIAARMEHYGCVVDLLGRSGQL 370
Query: 214 EFARQVFQRMHKR-TLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
E A +V M R V + G ++G VG A + LMQ
Sbjct: 371 EEAMRVVTTMPMRPNEVVLGAFFAGCRMHGDVGMAEQ---LMQ 410
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 131/212 (61%), Gaps = 3/212 (1%)
Query: 97 NVMVSTALLDMYAK-FGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVM 153
++ V ++ MY+ G ++ A VFD M D W+A++ G+ + EA+ FR M
Sbjct: 166 DIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREM 225
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q++ V PD +T++S+L+ C ++ L +G W+ Y+ + + V V N L+D++++ G I
Sbjct: 226 QMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDI 285
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A ++F+ M+++T+VSW S+IVG A++G EA F M D+V+F G L+AC
Sbjct: 286 SKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSAC 345
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH+GL+E G +YF M K Y++ P+IEH+GC+
Sbjct: 346 SHSGLVERGREYFGSMMKKYKLVPKIEHYGCM 377
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 8/195 (4%)
Query: 96 NNVMVSTALLDMYAKFGRMD-LATVVFDVMRGCDFWTALLNGFVKRDYFE------EALE 148
NN +V T + + D A+ +F + A L + R Y + +AL
Sbjct: 59 NNPLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALA 118
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
+ +M + P+ T VL CA + L +G +H V K F ++ V NT++ +YS
Sbjct: 119 LYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYS 178
Query: 209 -RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
G I AR+VF M K V+W+++I G+A G EA+ F MQ DE++
Sbjct: 179 CCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMV 238
Query: 268 GALTACSHAGLIEDG 282
L+AC+ G +E G
Sbjct: 239 SMLSACTDLGALELG 253
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 152/327 (46%), Gaps = 62/327 (18%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC---------- 90
T +T W I H RS ++ F RM L G + T+ LLS C
Sbjct: 86 TAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGE 145
Query: 91 -------------------------------ADF------------PSNNVMVSTALLDM 107
DF P +NV+ +LL
Sbjct: 146 QIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAG 205
Query: 108 YAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
Y + G D A VFD M R WT ++ GF + + AL F M+ +GVE D + +
Sbjct: 206 YVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVAL 265
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPK----QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
++ L+ CA + L +G W+H YV + + V + N L+ +Y+ G ++ A +VF+
Sbjct: 266 VAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFE 325
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM---QKGVFKTDEVSFTGALTACSHAGL 278
+ +R VSW+SII GFA G EA+ F LM + + DE++F GALTACSHAGL
Sbjct: 326 EIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGL 385
Query: 279 IEDGLQYFDIMKKIYRVSPQIEHHGCI 305
I DG++ F M K + V PQIEH+GC+
Sbjct: 386 ISDGIRLFQSMHKTFGVIPQIEHYGCM 412
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
I SVL C + R L +H + F + N L+ +Y FG + A++VF+ +
Sbjct: 30 IFSVLKSCVSFRNLAK---IHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDIT 86
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ WN II G + +++E F M + + +++ L+AC + L +G Q
Sbjct: 87 APSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQ 146
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 160/319 (50%), Gaps = 52/319 (16%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGT--NPSHITFVTLLSGC------ 90
+S + V W + I + R G EA F RM P +T + +SGC
Sbjct: 185 RSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDL 244
Query: 91 -----------ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGF 137
+D S V + AL+DMY K G +++A VF+ + R WT ++ GF
Sbjct: 245 ELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGF 304
Query: 138 VK----------------RDYF---------------EEALEYFRVMQISGVEPDYLTII 166
K RD F +EAL F MQ + V PD +T++
Sbjct: 305 AKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMV 364
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
++L C+ + L +G+W+HRY+ K +V + +L+D+Y++ G IE A +F+ + ++
Sbjct: 365 NLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEK 424
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
++W ++I G A +G EA+E+F M + K DE++F G L+AC HAGL+++G ++F
Sbjct: 425 NALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFF 484
Query: 287 DIMKKIYRVSPQIEHHGCI 305
+M+ Y + +++H+ C+
Sbjct: 485 SLMETKYHLERKMKHYSCM 503
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 129/281 (45%), Gaps = 55/281 (19%)
Query: 71 MRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAKFGR 113
+R P H+TF LL CA ++V V A + G
Sbjct: 116 LRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGP 175
Query: 114 MDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYF--RVMQISGVEPDYLTIISVL 169
M+ A +FD +R W L+ G+V+R EALE F V + + V PD +T+I+ +
Sbjct: 176 MEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAV 235
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
+ C +R L +G +H +V VR+ N LMD+Y + G +E A+ VF+R+ RT+V
Sbjct: 236 SGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVV 295
Query: 230 SWNSIIVGFA--------------------------VNGFV-----GEALEYFNLMQKGV 258
SW ++IVGFA + G+V EAL F+ MQ+
Sbjct: 296 SWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEAS 355
Query: 259 FKTDEVSFTGALTACSHAGLIEDGL---QYFDIMKKIYRVS 296
DE++ LTACS G +E G+ +Y + + ++ V+
Sbjct: 356 VVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVA 396
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 8/151 (5%)
Query: 135 NGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193
+G V+R L +R + SG PD+LT +L CA +R G G +V +
Sbjct: 102 HGVVRR-----CLPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGL 156
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
+V V N S G +E AR++F R R LVSWN++I G+ G EALE F
Sbjct: 157 DSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWR 216
Query: 254 M--QKGVFKTDEVSFTGALTACSHAGLIEDG 282
M + V + DEV+ A++ C +E G
Sbjct: 217 MVAEDAVVRPDEVTMIAAVSGCGQMRDLELG 247
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 28/238 (11%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----------- 96
W + ++ + + EA F M+ P IT V LL+ C+ +
Sbjct: 328 WNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIE 387
Query: 97 ------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
+V + T+L+DMYAK G ++ A +F + + WTA++ G + EA+E
Sbjct: 388 KHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIE 447
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP-KQDFKDNVRVCNTLMDVY 207
+FR M G +PD +T I VL+ C + + G + K + ++ + ++D+
Sbjct: 448 HFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLL 507
Query: 208 SRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
R G ++ A Q+ M + V W +I + G + +L +K K E+
Sbjct: 508 GRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNI-------SLGEKAAMKLVEI 558
>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
Length = 742
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 143/280 (51%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
++ WT+ ++ ++G LEA F RMR G TF ++L+ C +
Sbjct: 243 SITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHA 302
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+NV V +AL+DMY+K + LA VF M R WTA++ G+ + EE
Sbjct: 303 YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEE 362
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F MQ+ G++PD T+ SV++ CAN+ +L G H + V N L+
Sbjct: 363 AVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVT 422
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y + G IE A ++F M VSW +++ G+A G E ++ F M K D V+
Sbjct: 423 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVT 482
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L+ACS AGL+E G YFD M+K + + P +H+ C+
Sbjct: 483 FIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCM 522
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 33/219 (15%)
Query: 100 VSTALLDMYAKFG----------RMDLATVV---------------------FDVM--RG 126
V + L+DMYAK G M+ TVV F +M R
Sbjct: 183 VGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRD 242
Query: 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186
WT ++ G + EAL+ FR M+ GV D T S+L C + L G +H
Sbjct: 243 SITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHA 302
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
Y+ + ++DNV V + L+D+YS+ I A VF+RM R ++SW ++IVG+ N E
Sbjct: 303 YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEE 362
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
A+ F+ MQ K D+ + +++C++ +E+G Q+
Sbjct: 363 AVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQF 401
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 34/227 (14%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ P N+ ALL A + +F M R + AL+ GF +++
Sbjct: 73 EMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQL 132
Query: 150 FR-VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
+R +++ V P +T+ +++ V + + +G +H V + F V + L+D+Y+
Sbjct: 133 YRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYA 192
Query: 209 RFGCIEFARQVFQRMHKRTLV-------------------------------SWNSIIVG 237
+ G I AR+VFQ M +T+V +W +++ G
Sbjct: 193 KMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTG 252
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
NG EAL+ F M+ D+ +F LTAC +E+G Q
Sbjct: 253 LTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQ 299
>gi|255542942|ref|XP_002512534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548495|gb|EEF49986.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 444
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 155/302 (51%), Gaps = 50/302 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W++ IS + ++G EA + F +M YG + V++LS CA +
Sbjct: 125 VSWSALISGYEQNGRYEEALVTFGKMNAYGIMVDEVVVVSVLSACAHLFAVKTGKLVHSL 184
Query: 96 -------NNVMVSTALLDMYA-------------------------------KFGRMDLA 117
+ V + AL+ MY+ K G ++ A
Sbjct: 185 AVKIGIESYVNLQNALIHMYSSCREIDSAQKLFNVGYSLDQISWNSMISGYLKCGEIEKA 244
Query: 118 TVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
+FD+M D W+A+++G+ + D F E L F+ MQ+ GV+PD T++SV++ C ++
Sbjct: 245 KALFDIMNDKDLVSWSAMISGYAQHDRFAETLALFQEMQLDGVKPDETTLVSVVSACTHL 304
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
L G W+H Y+ K K NV + TL+D+Y +FGC+E A +VF M ++ + +WN++I
Sbjct: 305 AALDQGKWIHLYLRKNGLKINVILGTTLIDMYMKFGCVEDALEVFHGMKEKGVSTWNAVI 364
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV 295
+G A+NG V +L+ F+ M+ +E++F L AC H GL+E+G +F M + +++
Sbjct: 365 LGLALNGLVHMSLDTFSEMKDCGVVPNEITFVAVLVACRHMGLVEEGRCHFSSMIQEHKI 424
Query: 296 SP 297
P
Sbjct: 425 EP 426
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
++ FV+R+Y ++ ++ M VEPD T +L C+ G +H +V K
Sbjct: 1 MMRAFVQRNYPYYCMDMYKWMLQENVEPDNFTYPILLQSCSLRVAKFDGKLIHCHVLKMS 60
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQR----------------------------MH 224
F +V V NTL+++YS + AR+VF M
Sbjct: 61 FNFDVYVQNTLINLYSVCQNLGDARKVFDESPVLDLVSWNSILAGKGDVTEAYRLFSEMC 120
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
K+ LVSW+++I G+ NG EAL F M DEV L+AC+H ++ G
Sbjct: 121 KKDLVSWSALISGYEQNGRYEEALVTFGKMNAYGIMVDEVVVVSVLSACAHLFAVKTG 178
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 151/279 (54%), Gaps = 21/279 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
V WT+ IS + S + + AL+ M G P+ T+ ++L C P+
Sbjct: 120 NVVSWTTMISAY--SNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQLHCG 177
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++V V +AL+D+Y+K+ +D A VFD M D W +++ GF + EA
Sbjct: 178 IIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEA 237
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F+ M+ +G D T+ SVL C + L +G +H +V K F ++ + N L+D+
Sbjct: 238 LNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDM 295
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G +E A F RM ++ ++SW++++ G A NG+ +ALE F M++ + + ++
Sbjct: 296 YCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITV 355
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSHAGL+E G YF MKK++ V P EH+GC+
Sbjct: 356 LGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCL 394
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 103/200 (51%), Gaps = 13/200 (6%)
Query: 90 CADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEAL 147
C + +V+T LL+MY KF ++ A +FD M R WT +++ + + ++AL
Sbjct: 83 CKGYEPKMFVVNT-LLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNK-LNDKAL 140
Query: 148 EYFRVMQISGVEPDYLTIISVLNVC---ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+ +M GV P+ T SVL C N+R L G + K + +V V + L+
Sbjct: 141 KCLILMFREGVRPNMFTYSSVLRACDGLPNLRQLHCG------IIKTGLESDVFVRSALI 194
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
DVYS++ ++ A VF M R LV WNSII GFA N EAL F M++ F D+
Sbjct: 195 DVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQA 254
Query: 265 SFTGALTACSHAGLIEDGLQ 284
+ T L AC+ L+E G Q
Sbjct: 255 TLTSVLRACTGLALLELGRQ 274
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
A+ M+ GV D +T ++ C+ + G +H ++ + ++ + V NT
Sbjct: 36 LHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNT 95
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+++Y +F +E A +F M +R +VSW ++I ++ N +AL+ LM + + +
Sbjct: 96 LLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPN 154
Query: 263 EVSFTGALTACS--------HAGLIEDGLQ 284
+++ L AC H G+I+ GL+
Sbjct: 155 MFTYSSVLRACDGLPNLRQLHCGIIKTGLE 184
>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 472
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 126/209 (60%), Gaps = 3/209 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG 157
V TALLD Y K G+++ A VF + D W+A+L G+ + E A++ F + G
Sbjct: 34 VGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGG 93
Query: 158 VEPDYLTIISVLNVCANVR-TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
++P+ T S+LNVCA ++G G H + K ++ V + L+ +Y++ G IE A
Sbjct: 94 IKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESA 153
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
+VF+R ++ LVSWNS+I G+A +G +AL+ F M+K K D V+F G AC+HA
Sbjct: 154 EEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHA 213
Query: 277 GLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
GL+E+G +YFDIM + +++P EH+ C+
Sbjct: 214 GLVEEGEKYFDIMVRDCKIAPTKEHNSCM 242
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 37/207 (17%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V W++ ++ + ++G A F + G P+ TF ++L+ CA ++
Sbjct: 64 VAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHG 123
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
++ VS+ALL MYAK G ++ A VF R D W ++++G+ + +
Sbjct: 124 FAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMK 183
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC----- 200
AL+ F+ M+ V+ D +T I V C + + G +Y F VR C
Sbjct: 184 ALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEG---EKY-----FDIMVRDCKIAPT 235
Query: 201 ----NTLMDVYSRFGCIEFARQVFQRM 223
+ ++D+YSR G +E A +V + M
Sbjct: 236 KEHNSCMVDLYSRAGQLEKAMKVIENM 262
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 51/91 (56%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H V K +++ + V L+D Y + G +E A +VF + + +V+W++++ G+A G
Sbjct: 19 VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGE 78
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A++ F + KG K +E +F+ L C+
Sbjct: 79 TEAAIKMFGELTKGGIKPNEFTFSSILNVCA 109
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 146/281 (51%), Gaps = 20/281 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
+ V WTS I+ + R G + F M G +P T T+L CA
Sbjct: 316 SVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVH 375
Query: 92 DFPSNNVM-----VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++ N M VS AL+DMYAK G M A VF M+ D W ++ G+ K
Sbjct: 376 NYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPN 435
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL F MQ + +P+ +T+ +L CA++ L G +H ++ + F + V N L+
Sbjct: 436 EALNLFVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALV 494
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y + G + AR +F + ++ LVSW +I G+ ++G+ EA+ FN M+ + DEV
Sbjct: 495 DMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEV 554
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SF L ACSH+GL+++G +F++M+ + P+ EH+ CI
Sbjct: 555 SFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACI 595
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 126/258 (48%), Gaps = 20/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
+ W S IS + +G + F +M L G N T V++++GC++
Sbjct: 217 ISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGY 276
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+ ++ LLDMY+K G ++ A VF+ M R WT+++ G+ + + +
Sbjct: 277 AIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMS 336
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ F M+ G+ PD TI ++L+ CA L G +H Y+ + + ++ V N LMD+
Sbjct: 337 VRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDM 396
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G + A VF M + +VSWN++I G++ N EAL F MQ K + ++
Sbjct: 397 YAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITM 455
Query: 267 TGALTACSHAGLIEDGLQ 284
L AC+ +E G +
Sbjct: 456 ACILPACASLAALERGQE 473
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 100/181 (55%), Gaps = 2/181 (1%)
Query: 113 RMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN 170
R++ A +FD + D W ++++G+V E+ L+ F M + G+ D T++SV+
Sbjct: 200 RVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVA 259
Query: 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS 230
C+N L +G +H Y K F + + N L+D+YS+ G + A QVF+ M +R++VS
Sbjct: 260 GCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVS 319
Query: 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
W S+I G+A G ++ F+ M+K D + T L AC+ GL+E+G + +K
Sbjct: 320 WTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIK 379
Query: 291 K 291
+
Sbjct: 380 E 380
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 72/182 (39%), Gaps = 53/182 (29%)
Query: 151 RVMQISGVEP----DYLTIISVLNVCANVRTLGIGLWMHR-------------------- 186
R M++ P + T SVL +CA+++++ G +H
Sbjct: 86 RAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFM 145
Query: 187 YVPKQDFKDNVRV-----------CNTLMDVYSRFGC------------------IEFAR 217
YV D ++ R+ N LM+ Y++ G +E AR
Sbjct: 146 YVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESAR 205
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
++F + R ++SWNS+I G+ NG + L+ F M TD + + CS+ G
Sbjct: 206 KLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTG 265
Query: 278 LI 279
++
Sbjct: 266 ML 267
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 129/214 (60%), Gaps = 2/214 (0%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFR 151
PS +V+ ++D +A+ + +A FD M R W +L +++ + + L +F
Sbjct: 282 PSRDVVSWNCMIDGFARIKDVSMAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFD 341
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
+M PD +++SVL CA ++ L G W+H Y+ K ++ + L+ +Y++ G
Sbjct: 342 MMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHSYMKDNGIKPDMLLSTALLTMYAKCG 401
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ AR+VF +M ++++VSWNS+I+G+ ++G +ALE F M+KG ++ +F L+
Sbjct: 402 AMDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFREMEKGGPMPNDATFMSVLS 461
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSH+G++ +G YFD+M + YR+ P+ EH+GC+
Sbjct: 462 ACSHSGMVWNGWWYFDLMHRKYRIQPKPEHYGCL 495
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 27/232 (11%)
Query: 78 PSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVV 120
P+H TF + CAD S ++ V + + Y+ GR A +V
Sbjct: 156 PNHYTFPLVAKVCADIGSLREGQKVHALVVKFGFELDLFVRNSFIRFYSVCGRTSDARMV 215
Query: 121 FDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL 178
FD D W ++++G+VK A E F M E D T S+++ V +
Sbjct: 216 FDNGFVLDLVSWNSMIDGYVKNGELGLAREIFDEM----YERDIFTWNSMISGYVGVGDM 271
Query: 179 GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF 238
+ +P +D V N ++D ++R + A + F M R +VSWN ++ +
Sbjct: 272 EAARGLFDKMPSRD----VVSWNCMIDGFARIKDVSMAAKFFDEMPLRNVVSWNVMLALY 327
Query: 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
+ L +F++M G F DE S LTAC+ +++ G MK
Sbjct: 328 LRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHSYMK 379
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
Y+ M V P++ T V VCA++ +L G +H V K F+ ++ V N+ + YS
Sbjct: 145 YYEKMIAKWVLPNHYTFPLVAKVCADIGSLREGQKVHALVVKFGFELDLFVRNSFIRFYS 204
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
G AR VF LVSWNS+I G+ NG +G A E F+ M ++ D ++
Sbjct: 205 VCGRTSDARMVFDNGFVLDLVSWNSMIDGYVKNGELGLAREIFDEM----YERDIFTWNS 260
Query: 269 ALTACSHAGLIEDGLQYFDIM 289
++ G +E FD M
Sbjct: 261 MISGYVGVGDMEAARGLFDKM 281
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 127/212 (59%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
N++ A++ YAK G + A +F+ M D WT+++ G+ EA++ F+ M
Sbjct: 237 KNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEM 296
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+S V+PD +T+ + L+ CA++ +L G +H Y+ K D K +V V N+L+D+Y + G +
Sbjct: 297 MVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVV 356
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A QVF M R VSW SII G AVNGF AL F+ M K +F G L AC
Sbjct: 357 EKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLAC 416
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+H GL++ G+++F M+ YR++P+++H+GC+
Sbjct: 417 AHVGLVDKGVEHFKSMENTYRLAPEMKHYGCV 448
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 138/299 (46%), Gaps = 52/299 (17%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
T + W I +S +A + M G SH+TF+ L CA
Sbjct: 36 TLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVR 95
Query: 92 ------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
F S + VS AL+ MY FG + +A VFD M R W +++ G+ + + F
Sbjct: 96 VHSMKLGFESXS-FVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRF 154
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
++ L+ FR MQ V D +T++ ++ + +G ++ +Y+ + ++ + NTL
Sbjct: 155 KKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTL 214
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV------------------- 244
+D+Y R G I+FA +VF +M ++ +VSWN++I+G+A G +
Sbjct: 215 IDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWT 274
Query: 245 ------------GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
EA++ F M + K DE++ AL+AC+H G ++ G D ++K
Sbjct: 275 SMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRK 333
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 20/199 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
+ WTS I + + EA F M + P IT T LS CA S
Sbjct: 270 VISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHD 329
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
++V V +L+DMY K G ++ A VF+ M+ D WT++++G + E
Sbjct: 330 YIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAES 389
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLM 204
AL F M G+ P + T + VL CA+V + G+ + + ++ ++
Sbjct: 390 ALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVV 449
Query: 205 DVYSRFGCIEFARQVFQRM 223
D+ R G ++ A ++M
Sbjct: 450 DLLCRSGYLDMAYNFIKKM 468
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 128/206 (62%), Gaps = 3/206 (1%)
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
+++ Y K GR++ A +FDVM D W+A++ G V + EAL F M+ ++P
Sbjct: 340 SMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKP 399
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D +T++SV++ C+N+ L G +H Y+ K + + + +L+D+Y + GC+E A +VF
Sbjct: 400 DDVTLVSVISACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVF 459
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGALTACSHAGLI 279
+ ++ WN++IVG A+NG V +L+ F+ M+ G +E++FTG L+AC H GL+
Sbjct: 460 DMLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLV 519
Query: 280 EDGLQYFDIMKKIYRVSPQIEHHGCI 305
E+G Q+F +M+ Y++ P I H+GC+
Sbjct: 520 EEGRQFFKLMQNKYQIVPNIRHYGCM 545
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 29/255 (11%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
V W + ++ + R G + +A FTRM P + +A+
Sbjct: 172 AVSWNTILATYVRDGDVEQAVKVFTRM----------------------PERSAAAVSAM 209
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+ ++A+ G ++ A VFD D WTA+++ F + D F EAL F M+ G D
Sbjct: 210 VALFARRGMVEEARGVFDGAEHRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDE 269
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
++SV+ CA + G H V + V V N L+ +YS + AR++F
Sbjct: 270 AVMVSVVAACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDN 329
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
SWNS+I G+ NG V +A F++M D VS++ + C H +
Sbjct: 330 GESLDHFSWNSMISGYLKNGRVEDAKALFDVMP----DKDNVSWSAMIAGCVHNNQSSEA 385
Query: 283 LQYFDIMKKIYRVSP 297
L FD M+ + + P
Sbjct: 386 LNVFDSMRA-HEIKP 399
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 22/212 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN-------- 97
V W++ I+ + EA F MR + P +T V+++S C++ +
Sbjct: 367 VSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNLSALEQGKLVHEY 426
Query: 98 ---------VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+++ T+L+DMY K G M+ A VFD++ +G W A++ G +
Sbjct: 427 IRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTPCWNAVIVGLAMNGLVTRS 486
Query: 147 LEYFRVMQISGVE-PDYLTIISVLNVCANVRTLGIGLWMHRYVP-KQDFKDNVRVCNTLM 204
L+ F M+ +G P+ +T VL+ C + + G + + K N+R ++
Sbjct: 487 LDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYGCMV 546
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLV-SWNSII 235
D+ R G + A + Q M V +W +++
Sbjct: 547 DLLGRAGYVREAEDMIQSMPMSPDVPAWGALL 578
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD T + CA + GL +H + K F DN+ + N LM +YS GC+ AR+V
Sbjct: 104 PDTYTHPLLAAACAARGDVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRV 163
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
F VSWN+I+ + +G V +A++ F M +
Sbjct: 164 FDAGPVWDAVSWNTILATYVRDGDVEQAVKVFTRMPE 200
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 147/277 (53%), Gaps = 20/277 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------ 92
TV W S+++ R G + A F M + +++ T+L G
Sbjct: 219 TVSWNSAMAAMVRQGEVASARRMFDEM----PDKDTVSWNTVLDGYTKAGKMEDAFELFQ 274
Query: 93 -FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
P NV+ + ++ Y K G +++A V+FD M + WT +++ + EEA
Sbjct: 275 CMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRL 334
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F M+ + VE D ++S+L CA +L +G +HRYV + + VCN ++D++ +
Sbjct: 335 FTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCK 394
Query: 210 FGCIEFARQVFQ-RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
GC+ A VF + ++ VSWN+II GFA++G +AL++F M+ F+ D V+
Sbjct: 395 CGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMIN 454
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+AC+H G +E+G Q+F M++ Y + PQIEH+GC+
Sbjct: 455 VLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCM 491
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 17/201 (8%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+ V AL+D Y+K G A+ VF+ M R W + + V++ A F M
Sbjct: 186 EDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEM 245
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ D ++ +VL+ + + + +P++ NV +T++ Y + G I
Sbjct: 246 P----DKDTVSWNTVLDGYTKAGKMEDAFELFQCMPER----NVVSWSTVVSGYCKKGDI 297
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E AR +F +M + LV+W ++ A NG V EA F M++ + D + L AC
Sbjct: 298 EMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAAC 357
Query: 274 SHAGLIEDGLQYFDIMKKIYR 294
+ +G + G K+I+R
Sbjct: 358 AESGSLALG-------KRIHR 371
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H +V K ++ V N L+D YS+ G A +VF+ M +R VSWNS + G
Sbjct: 175 VHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGE 234
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
V A F+ M D VS+ L + AG +ED + F M + VS
Sbjct: 235 VASARRMFDEMP----DKDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVS 283
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 152/286 (53%), Gaps = 23/286 (8%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---------- 91
I V W + IS + G EA F M P T T+LS C
Sbjct: 172 IKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQ 231
Query: 92 --------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
F SN +V+ AL+D+Y+K G M+ A +F+ ++ D W L+ G+ +
Sbjct: 232 IHSWIDNHGFGSNLKLVN-ALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYIN 290
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ--DFKDNVRV 199
+ +EAL F+ M G P+ +T++S+L CA++ + IG W+H Y+ K+ N +
Sbjct: 291 HHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSL 350
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
+L+D+Y++ G IE A QVF + ++L S N++I GFA++G A + + M+K
Sbjct: 351 QTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGI 410
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D+++F G L+ACSHAGL + G + F M YR+ P++EH+GC+
Sbjct: 411 EPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCM 456
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 136/273 (49%), Gaps = 27/273 (9%)
Query: 13 PFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMR 72
PFL +++ ++ QI Q T+D V TS IS + ++G + +A
Sbjct: 82 PFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVH-TSLISMYAQNGIVEDA-------- 132
Query: 73 LYGTNPSHITFVTLLSGCADFPSNNVMVS-TALLDMYAKFGRMDLATVVFDVMRGCDF-- 129
H F D S+ +VS TA++ YA G MD A +FD + D
Sbjct: 133 -------HKVF--------DTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVS 177
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W A+++G+ + ++EALE F M V+PD T+ +VL+ C + + +G +H ++
Sbjct: 178 WNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWID 237
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
F N+++ N L+D+YS+ G +E A +F+ + + ++SWN++I G+A EAL
Sbjct: 238 NHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALL 297
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
F M K ++V+ L AC+H G I+ G
Sbjct: 298 VFQEMLKLGETPNDVTMLSILPACAHLGAIDIG 330
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 31/186 (16%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W ++ G AL + M G+ P+ T + CA + G +H +
Sbjct: 46 WNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQIL 105
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVF---------------------------QR 222
K ++ V +L+ +Y++ G +E A +VF Q+
Sbjct: 106 KYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQK 165
Query: 223 MHK----RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
M + +VSWN++I G+A G EALE FN M K K DE + L+ C+H+G
Sbjct: 166 MFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGN 225
Query: 279 IEDGLQ 284
+E G Q
Sbjct: 226 VELGRQ 231
>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 148/280 (52%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
+ W++ I+ + ++G +A F++M G PS T V +L C+D +
Sbjct: 279 AITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHG 338
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ +TAL+DMYAKFG A FD + D WT+++ G+V+ EE
Sbjct: 339 YLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEE 398
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL + MQ+ + P+ LT+ SVL C+N+ L G +H K + + + L
Sbjct: 399 ALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALST 458
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G +E +F+RM +R +VSWN++I G + NG EALE F M+ K D ++
Sbjct: 459 MYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHIT 518
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L+ACSH G+++ G YF++M + + P++EH+ C+
Sbjct: 519 FVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACM 558
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 136/310 (43%), Gaps = 51/310 (16%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTR----------------------------- 70
++ID +S ++ +C+ GC+ EA F R
Sbjct: 142 ASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVF 201
Query: 71 --MRLYGTNPSHITFVTLLSG--CADFPSNN---------------VMVSTALLDMYAKF 111
MRL N + F ++LS C +F + V V AL+ MYAK
Sbjct: 202 GLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKC 261
Query: 112 GRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
G ++ + ++F++ + W+AL+ G+ + +AL+ F M +G P T++ VL
Sbjct: 262 GNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVL 321
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
C++V + G H Y+ K ++ + L+D+Y++FG AR+ F + + LV
Sbjct: 322 KACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLV 381
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
W SII G+ NG EAL + MQ +E++ L ACS+ +E G Q
Sbjct: 382 LWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHART 441
Query: 290 KKIYRVSPQI 299
K Y + P++
Sbjct: 442 IK-YGLGPEL 450
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 102/222 (45%), Gaps = 34/222 (15%)
Query: 79 SHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNG 136
+HI + LS C ++ +NN L+ YAK G + A +VF+ ++ + + L++G
Sbjct: 31 AHIIKIPYLSSC-NYLANN------LIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHG 83
Query: 137 FV----KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA----------NVRTLGIGL 182
K F LE FR M + + PD T V A V LGI
Sbjct: 84 LSHNGSKGSNF--VLELFRRMIANNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGI-- 139
Query: 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG 242
K D+V V ++L++ Y + GC+ AR++F RM +R LVSW ++I G+A
Sbjct: 140 -------KTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQ 192
Query: 243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
EAL F LM+ +E FT L+A ++ G Q
Sbjct: 193 MAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQ 234
>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 160/301 (53%), Gaps = 27/301 (8%)
Query: 32 SIQTNNSKSTIDT-----TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL 86
S+ +++K+ D+ V W S I+ +G LEA F RMRL G + F T+
Sbjct: 241 SLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATV 300
Query: 87 LSGCADFPSN-----------------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD- 128
+ CA+ ++ + TAL+ Y+K +D A +F +M G
Sbjct: 301 IKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQN 360
Query: 129 --FWTALLNGFVKRDYFEEALEYF-RVMQISGVEPDYLTIISVLNVCAN-VRTLGIGLWM 184
WTA+++G+V+ + A+ F ++ + GVEP+ T SVLN CA ++ G
Sbjct: 361 VVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQF 420
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
H K F + + V + L+ +Y++ G IE A +VF+R R LVSWNS+I G+A +G
Sbjct: 421 HSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCG 480
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
++L+ F M+ + D ++F G ++AC+HAGL+ +G +YFD+M K Y + P +EH+ C
Sbjct: 481 KKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSC 540
Query: 305 I 305
+
Sbjct: 541 M 541
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 2/181 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+V V T+L+DMY K ++ VFD MR + WT+LL G+ + E+AL+ F MQ
Sbjct: 126 DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQ 185
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ G++P+ T +VL A + G+ +H V K + V N+++++YS+ +
Sbjct: 186 LEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVS 245
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A+ VF M R VSWNS+I GF NG EA E F M+ K + F + C+
Sbjct: 246 DAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCA 305
Query: 275 H 275
+
Sbjct: 306 N 306
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 129/267 (48%), Gaps = 24/267 (8%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ V WTS ++ + ++G +A F++M+L G P+ TF +L G A +
Sbjct: 155 VKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ 214
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
+ + V ++++MY+K + A VFD M R W +++ GFV
Sbjct: 215 VHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGL 274
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
EA E F M++ GV+ +V+ +CAN++ + +H V K ++ +
Sbjct: 275 DLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTA 334
Query: 203 LMDVYSRFGCIEFARQVFQRMHK-RTLVSWNSIIVGFAVNGFVGEALEYFNLM--QKGVF 259
LM YS+ I+ A ++F MH + +VSW +II G+ NG A+ F M ++GV
Sbjct: 335 LMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGV- 393
Query: 260 KTDEVSFTGALTACSH-AGLIEDGLQY 285
+ +E +F+ L AC+ +E G Q+
Sbjct: 394 EPNEFTFSSVLNACAAPTASVEQGKQF 420
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
LL F + D +EAL F ++ SG D ++ VL VC + +G +H K
Sbjct: 63 LLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCG 122
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
F ++V V +L+D+Y + +E +VF M + +VSW S++ G+ NG +AL+ F+
Sbjct: 123 FVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFS 182
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
MQ K + +F L + G +E G+Q
Sbjct: 183 QMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ 214
>gi|449506393|ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 614
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 127/209 (60%), Gaps = 4/209 (1%)
Query: 101 STALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
+ L+ +Y+K G ++ A VF+ R W A++ G + +EA+ F ++ SG+
Sbjct: 302 ESGLISLYSKIGDLECACKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGL 361
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYV--PKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
EPD TI+SV + C ++ L + L MH++V K K N+ + N+L+D+Y + G ++ A
Sbjct: 362 EPDDFTIVSVTSACGSLGNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCGRMDLA 421
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
+VF M R + SW S+IVG+A++G V +ALE F M++ ++V+F G L+AC H
Sbjct: 422 MKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMREAGVPPNQVTFVGVLSACVHG 481
Query: 277 GLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G+I +G YFD+MK +Y PQ+ H+GC+
Sbjct: 482 GMINEGKHYFDMMKNVYGFKPQLPHYGCM 510
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 33/243 (13%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W + I+ + G EA F ++R G P T V++ S C +
Sbjct: 333 WNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGNLELSLQMHKFVF 392
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+N+++ +L+DMY K GRMDLA VF M R WT+L+ G+ ++A
Sbjct: 393 QVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQA 452
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD---FKDNVRVCNTL 203
LE F+ M+ +GV P+ +T + VL+ C + + G H + ++ FK + +
Sbjct: 453 LENFQFMREAGVPPNQVTFVGVLSACVHGGMINEG--KHYFDMMKNVYGFKPQLPHYGCM 510
Query: 204 MDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG------FVGEALEYFNLMQK 256
+D+ S+ G +E AR++ + M K + W +I G +G + G+ L+
Sbjct: 511 VDLLSKAGLLEEARRMIEEMPMKANSIIWGCLIGGCEKHGNVEIGEWAGKHLQELEPWND 570
Query: 257 GVF 259
GV+
Sbjct: 571 GVY 573
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 1/187 (0%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
+M T +L++Y + L T + + +W ++ + + + AL + M +G
Sbjct: 201 LMNCTNVLELYQIHAHV-LRTNMLENHPSSFYWNIIIRSYTRLEVPRIALFVYIAMLQAG 259
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
+ PD T+ V + +GL +H + F+ + + L+ +YS+ G +E A
Sbjct: 260 ILPDCYTLPIVFKALSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECAC 319
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+VF++ H R L SWN+II G + G EA+ F +++ + D+ + +AC G
Sbjct: 320 KVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLG 379
Query: 278 LIEDGLQ 284
+E LQ
Sbjct: 380 NLELSLQ 386
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 148/280 (52%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC--------------- 90
V WT+ I R+ LEA F M+ G + +T V++L
Sbjct: 170 VSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGF 229
Query: 91 ---ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
A +V + ++L+DMY K G D A VFD M R WTAL+ G+V+ FE+
Sbjct: 230 YLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEK 289
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+ F M S V P+ T+ SVL+ CA+V L G +H YV K + N V TL+D
Sbjct: 290 GMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLID 349
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
Y++ GC+E A VF+R+ ++ + +W ++I GFA +G+ A++ F+ M +EV+
Sbjct: 350 FYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVT 409
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L+AC+H GL+E+G + F MK+ + + P+ +H+ C+
Sbjct: 410 FIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACM 449
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 19/236 (8%)
Query: 66 LEFTRMRLYGTNPSHITFVTLLSGCADFPSNN----------------VMVSTALLDMYA 109
L + +MR G PS TF LL N + V +L+ Y+
Sbjct: 90 LSYRQMRRNGVVPSRHTFPPLLKAVFKLRDANPFQFHAHILKFGFDSDLFVRNSLISGYS 149
Query: 110 KFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
G + + VFD D WTA+++GFV+ D EA+ YF M+ SGV + +T++S
Sbjct: 150 NCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVS 209
Query: 168 VLNVCANVRTLGIGLWMHR-YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
VL + G +H Y+ + +V + ++L+D+Y + GC + A++VF M R
Sbjct: 210 VLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSR 269
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+V+W ++I G+ + + F M K +E + + L+AC+H G + G
Sbjct: 270 NVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRG 325
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 3/150 (2%)
Query: 129 FWTALLNGFVKRDYFEEALEY--FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186
W +L+ F R L + +R M+ +GV P T +L +R H
Sbjct: 69 LWDSLVGHFSGRVTLNRRLSFLSYRQMRRNGVVPSRHTFPPLLKAVFKLRDAN-PFQFHA 127
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
++ K F ++ V N+L+ YS G EF +VF + +VSW ++I GF N E
Sbjct: 128 HILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLE 187
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
A+ YF M++ +E++ L A A
Sbjct: 188 AMTYFVEMKRSGVAANEMTVVSVLKATRKA 217
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 155/288 (53%), Gaps = 20/288 (6%)
Query: 37 NSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS- 95
++ ID + ++ IS + +G EA F + P+ +T ++L GCA +
Sbjct: 402 DAARAIDVVIG-STMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAAL 460
Query: 96 ----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGF 137
V +AL+DMYAK GR+DL+ +F M D W ++++ F
Sbjct: 461 PLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSF 520
Query: 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197
+ +EAL+ FR M + G++ + +TI + L+ CA++ + G +H K K ++
Sbjct: 521 SQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADI 580
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
+ L+D+Y++ G +E A +VF+ M + VSWNSII + +G V E++ + MQ+
Sbjct: 581 FAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEE 640
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+K D V+F ++AC+HAGL+E+G+Q F M K Y ++P++EH C+
Sbjct: 641 GYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACM 688
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 2/190 (1%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
+N+V V +AL+ MYA G + A FD + R C W +++G +K + A+ FR
Sbjct: 173 ANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRN 232
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M+ SG EP++ T+ L+VCA L G +H K + V V NTL+ +Y++ C
Sbjct: 233 MRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQC 292
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ A ++F+ M + LV+WN +I G NG EA F MQ+ + D ++ L A
Sbjct: 293 LDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPA 352
Query: 273 CSHAGLIEDG 282
+ ++ G
Sbjct: 353 LTDLNGLKQG 362
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 115/258 (44%), Gaps = 19/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSN------ 96
V W + ++G + A F MR G P+ T LS CA D S
Sbjct: 208 VLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSL 267
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
V V+ LL MYAK +D A +F++M D W +++G V+ F EA
Sbjct: 268 AVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEA 327
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
F MQ SG PD +T++S+L ++ L G +H Y+ + +V + + L+D+
Sbjct: 328 FGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDI 387
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + + A+ ++ +V +++I G+ +NG EAL+ F + + K + V+
Sbjct: 388 YFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTI 447
Query: 267 TGALTACSHAGLIEDGLQ 284
L C+ + G Q
Sbjct: 448 ASVLPGCASMAALPLGQQ 465
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 7/203 (3%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF-----WTALLNGFVKRDYFEEALEYF 150
N++ + T LL MY R A VF + W L+ GF A+ ++
Sbjct: 68 NHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFY 127
Query: 151 RVM--QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
M + PD T+ V+ CA + + +G +HR ++V V + L+ +Y+
Sbjct: 128 VKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYA 187
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
G + AR F + +R V WN ++ G G V A+ F M+ + + +
Sbjct: 188 DAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLAC 247
Query: 269 ALTACSHAGLIEDGLQYFDIMKK 291
L+ C+ + G Q + K
Sbjct: 248 FLSVCATDADLLSGAQLHSLAVK 270
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 126/214 (58%), Gaps = 2/214 (0%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFR 151
P+ +V++ TA++D Y K G ++ A ++F+ M R W+A++ + + F+E L FR
Sbjct: 448 PNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFR 507
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
MQ +G P+ ++SVL CA++ L GLW+H Y + +F N + L+D+YS+ G
Sbjct: 508 RMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCG 567
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
C+E A FQ + + +WN++I G A+NG ++LE FN M + E +F LT
Sbjct: 568 CVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLT 627
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
AC+HA L+ +GL+ F+ M Y V PQ EH+ C+
Sbjct: 628 ACTHARLVREGLKLFEQMSSNYGVEPQXEHYACL 661
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 21/158 (13%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------- 91
+ W++ ++ + R G E F RM+ GT P+ V++L+ CA
Sbjct: 483 AISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHS 542
Query: 92 -----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFE 144
+F SN ++ +TAL+DMY+K G ++ A F + D W A+++G
Sbjct: 543 YAKQCNFDSNPIL-ATALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAW 601
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182
++LE F M +G +P T ++VL C + R + GL
Sbjct: 602 KSLELFNKMISNGTQPTETTFVAVLTACTHARLVREGL 639
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 39/196 (19%)
Query: 124 MRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLG---- 179
+R + +++ G+V A+ + M G+ + T ++ C TLG
Sbjct: 346 LRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACT---TLGSSSK 402
Query: 180 -IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF 238
IG +H +V F ++ V + L++ YS + AR +F R+ R +V W ++I G+
Sbjct: 403 LIGCLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGY 462
Query: 239 AVNGFV-------------------------------GEALEYFNLMQKGVFKTDEVSFT 267
G V E L F MQ+ +E
Sbjct: 463 GKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLV 522
Query: 268 GALTACSHAGLIEDGL 283
LTAC+H G + GL
Sbjct: 523 SVLTACAHLGALAQGL 538
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 140/257 (54%), Gaps = 19/257 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAK 110
F + G P TF +LL CA + +N+ + L++MYA+
Sbjct: 118 FGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAE 177
Query: 111 FGRMDLATVVFDVM-RGCDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
M+ A VFD M + C + A++ G+ + EAL FR +Q S +EP +T++SV
Sbjct: 178 CNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSV 237
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
+ CA + L +G W+H YV K+ F V+V L+D++++ G + A +F+ M R
Sbjct: 238 IMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDT 297
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
+W+++IV FA +G +A+ F M++ + DE++F G L ACSHAGL+E G YF
Sbjct: 298 QAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYS 357
Query: 289 MKKIYRVSPQIEHHGCI 305
M K Y ++P I+H+GC+
Sbjct: 358 MSKTYGITPGIKHYGCM 374
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 2/180 (1%)
Query: 114 MDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV 171
MD A +FD + D + + G+ + + A F + SG+ PD T S+L
Sbjct: 80 MDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKA 139
Query: 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW 231
CA+ + L G+ +H + K N+ +C TL+++Y+ + AR VF M + +VS+
Sbjct: 140 CASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 199
Query: 232 NSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
N+II G+A + EAL F +Q + +V+ + +C+ G ++ G + +KK
Sbjct: 200 NAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKK 259
>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 643
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 124/208 (59%), Gaps = 2/208 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVM 153
N+V V ++L+DMYA +MD + VFD CD W ++L G+ + EEAL FR M
Sbjct: 203 NDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRM 262
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+GV P +T S++ N+ L +G +H Y+ + F DN+ + ++L+D+Y + G +
Sbjct: 263 LQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNV 322
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ AR+VF + +VSW ++I+G+A++G EA F M+ G K + ++F LTAC
Sbjct: 323 DIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTAC 382
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEH 301
SHAGL+++G +YF+ M Y P +EH
Sbjct: 383 SHAGLVDNGWKYFNSMSNQYGFVPSLEH 410
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 2/167 (1%)
Query: 120 VFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
VFD M R W L+ G + +EAL R M G PD T+ +VL + A
Sbjct: 126 VFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECAD 185
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+ G+ +H Y K F ++V V ++L+D+Y+ ++++ +VF V WNS++ G
Sbjct: 186 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAG 245
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+A NG V EAL F M + + V+F+ + A + L+ G Q
Sbjct: 246 YAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQ 292
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 22/225 (9%)
Query: 32 SIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA 91
S++ +S S D V W S ++ + ++G + EA F RM G P +TF +L+
Sbjct: 224 SMKVFDSFSDCDA-VLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFG 282
Query: 92 DFP-----------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTA 132
+ ++N+ +S++L+DMY K G +D+A VF+ ++ D WTA
Sbjct: 283 NLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTA 342
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ- 191
++ G+ EA F M++ V+P+++T ++VL C++ + G + Q
Sbjct: 343 MIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQY 402
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
F ++ C L D R G ++ A M K T W++++
Sbjct: 403 GFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLL 447
>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 529
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 155/283 (54%), Gaps = 26/283 (9%)
Query: 46 VQWTSSISRHCRSGC---ILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN------ 96
V W + I+ + C + E + + R + P+ +T V++LS C+ +
Sbjct: 146 VMWNALIAAYAHGNCPYKVREVSYDMVRSNV---KPNGVTAVSILSVCSSLRALREGKAV 202
Query: 97 -----------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
+V V AL+ +Y+K G + A VF +M R WT+L+NG+ +
Sbjct: 203 HGYVTKNLIEFDVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCP 262
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNT 202
EAL +F+ M+ + PD +T++ V+ +C+ +R+ +G W+ +YV K K++ + N
Sbjct: 263 NEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGLLKESPAIANA 322
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
LMD++++ G I A Q+F M ++T+VSW +I G A++G AL F MQ+ FK D
Sbjct: 323 LMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLAMHGHGLSALVRFCQMQREGFKPD 382
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ F L+ACSHAGL+++G + F M+ Y +SP +EH+GC+
Sbjct: 383 SLVFLSLLSACSHAGLVDEGWRCFSSMEADYHISPWMEHYGCM 425
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 80/173 (46%), Gaps = 2/173 (1%)
Query: 112 GRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
G +A + D + G D W ++ G+++ + EEA+ + ++ G++ D T++ V+
Sbjct: 27 GTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILVYNHVRKKGLKVDTYTLVFVI 86
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
C + G +H + K F+ V + L+++Y F +Q+F M +R LV
Sbjct: 87 KACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLNLYGLFDEDCGLQQIFDEMPQRDLV 146
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
WN++I +A + E M + K + V+ L+ CS + +G
Sbjct: 147 MWNALIAAYAHGNCPYKVREVSYDMVRSNVKPNGVTAVSILSVCSSLRALREG 199
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 144/280 (51%), Gaps = 24/280 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH--ITFVTLLSGCAD--------- 92
V WTS I+ G IL A L R RL+ P + + ++SG +
Sbjct: 201 NVVAWTSMIN-----GYILSADLVSAR-RLFDLAPERDVVLWNIMVSGYIEGGDMVEARK 254
Query: 93 ----FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
P+ +VM +L YA G ++ +F+ M R W AL+ G+ F E
Sbjct: 255 LFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEV 314
Query: 147 LEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
L F R++ S V P+ T+++VL+ CA + L +G W+H Y K NV V N LMD
Sbjct: 315 LGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMD 374
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G IE A VF+ M + L+SWN++I G A++ +AL F M+ K D ++
Sbjct: 375 MYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGIT 434
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L AC+H GL+EDG YF M Y + PQIEH+GC+
Sbjct: 435 FIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCM 474
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQ 154
N ++ L+ + A RM A +FD + + W ++ G+ + + + E + F M+
Sbjct: 69 NEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMK 128
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ P+ T VL C + L G +H ++ K F+ N V TL+D+YS G +
Sbjct: 129 GMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVG 188
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
A ++F M +R +V+W S+I G+ ++ + A F+L
Sbjct: 189 DAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDL 227
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 28/255 (10%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W S + +S E F +M+ P+ TF +L C +
Sbjct: 104 WNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLI 163
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
N V T L+DMY+ G + A +F M R WT+++NG++ A
Sbjct: 164 KCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARR 223
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F + E D + + N+ + G + R + + +V NT++ Y+
Sbjct: 224 LFDLAP----ERD----VVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYA 275
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVSFT 267
G +E +F+ M +R + SWN++I G+A NG E L F ++ + ++ +
Sbjct: 276 TNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLV 335
Query: 268 GALTACSHAGLIEDG 282
L+AC+ G ++ G
Sbjct: 336 TVLSACARLGALDLG 350
>gi|449435190|ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 609
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 127/209 (60%), Gaps = 4/209 (1%)
Query: 101 STALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
+ L+ +Y+K G ++ A VF+ R W A++ G + +EA+ F ++ SG+
Sbjct: 297 ESGLISLYSKIGDLECACKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGL 356
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYV--PKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
EPD TI+SV + C ++ L + L MH++V K K N+ + N+L+D+Y + G ++ A
Sbjct: 357 EPDDFTIVSVTSACGSLGNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCGRMDLA 416
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
+VF M R + SW S+IVG+A++G V +ALE F M++ ++V+F G L+AC H
Sbjct: 417 MKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMREAGVPPNQVTFVGVLSACVHG 476
Query: 277 GLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G+I +G YFD+MK +Y PQ+ H+GC+
Sbjct: 477 GMINEGKHYFDMMKNVYGFKPQLPHYGCM 505
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 33/243 (13%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W + I+ + G EA F ++R G P T V++ S C +
Sbjct: 328 WNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGNLELSLQMHKFVF 387
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+N+++ +L+DMY K GRMDLA VF M R WT+L+ G+ ++A
Sbjct: 388 QVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQA 447
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD---FKDNVRVCNTL 203
LE F+ M+ +GV P+ +T + VL+ C + + G H + ++ FK + +
Sbjct: 448 LENFQFMREAGVPPNQVTFVGVLSACVHGGMINEG--KHYFDMMKNVYGFKPQLPHYGCM 505
Query: 204 MDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG------FVGEALEYFNLMQK 256
+D+ S+ G +E AR++ + M K + W +I G +G + G+ L+
Sbjct: 506 VDLLSKAGLLEEARRMIEEMPMKANSIIWGCLIGGCEKHGNVEIGEWAGKHLQELEPWND 565
Query: 257 GVF 259
GV+
Sbjct: 566 GVY 568
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 1/187 (0%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
+M T +L++Y + L T + + +W ++ + + + AL + M +G
Sbjct: 196 LMNCTNVLELYQIHAHV-LRTNMLENHPSSFYWNIIIRSYTRLEVPRIALFVYIDMLRAG 254
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
+ PD T+ V + +GL +H + F+ + + L+ +YS+ G +E A
Sbjct: 255 ILPDCYTLPIVFKALSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECAC 314
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+VF++ H R L SWN+II G + G EA+ F +++ + D+ + +AC G
Sbjct: 315 KVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLG 374
Query: 278 LIEDGLQ 284
+E LQ
Sbjct: 375 NLELSLQ 381
>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19191, mitochondrial; Flags: Precursor
gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 148/282 (52%), Gaps = 20/282 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD---------FP 94
T V W S + G +A + M P TF+ L + C +
Sbjct: 220 TVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIH 279
Query: 95 SNNVMVST--------ALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
S+ + + T + MY+K A ++FD+M R C WT +++G+ ++ +
Sbjct: 280 SHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMD 339
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-DNVRVCNTL 203
EAL F M SG +PD +T++S+++ C +L G W+ K DNV +CN L
Sbjct: 340 EALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNAL 399
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+YS+ G I AR +F ++T+V+W ++I G+A+NG EAL+ F+ M +K +
Sbjct: 400 IDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNH 459
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++F L AC+H+G +E G +YF IMK++Y +SP ++H+ C+
Sbjct: 460 ITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCM 501
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 21/264 (7%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---- 95
S + + W I +E+ L F M+ G P++ TF + CA
Sbjct: 12 SGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCC 71
Query: 96 -------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKR 140
++V V TA +DM+ K +D A VF+ M R W A+L+GF +
Sbjct: 72 EMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQS 131
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
+ ++A FR M+++ + PD +T+++++ + ++L + MH + V V
Sbjct: 132 GHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVA 191
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
NT + Y + G ++ A+ VF+ + + RT+VSWNS+ ++V G +A + LM +
Sbjct: 192 NTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREE 251
Query: 259 FKTDEVSFTGALTACSHAGLIEDG 282
FK D +F +C + + G
Sbjct: 252 FKPDLSTFINLAASCQNPETLTQG 275
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
T V WT+ I+ + +G LEA F++M P+HITF+ +L CA S +
Sbjct: 423 TVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAH--------SGS 474
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
L + F M V+++ G D ++ +++ ++ EEALE R M +PD
Sbjct: 475 LEKGWEYFHIM---KQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMS---AKPDAG 528
Query: 164 TIISVLNVCANVRTLGIG 181
++LN C R + I
Sbjct: 529 IWGALLNACKIHRNVKIA 546
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 157/322 (48%), Gaps = 57/322 (17%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----- 95
T+ + V W S I+ + ++G + EA F M G P +T +++S CA +
Sbjct: 213 TVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQ 272
Query: 96 -------------NNVMVSTALLDMYAKFGRMDLATVVFDVM------------------ 124
N++++ ALLDMYAK R++ A ++FD+M
Sbjct: 273 QIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKA 332
Query: 125 ---------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
+ W AL+ G + EEAL FR+++ V P + T ++L
Sbjct: 333 SKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLL 392
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFK------DNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
N CAN+ L +G H +V K F+ +V V N+L+D+Y + G +E +VFQ M
Sbjct: 393 NACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHM 452
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
++ VSWN++IVG+A NGF +ALE F M + D V+ G L ACSHAGL+++G
Sbjct: 453 LEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGR 512
Query: 284 QYFDIMKKIYRVSPQIEHHGCI 305
YF M + + P +H+ C+
Sbjct: 513 YYFRSMTAQHGLMPLKDHYTCM 534
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 134/265 (50%), Gaps = 26/265 (9%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W S IS + G EA + F +M +G + +F + LS CA
Sbjct: 119 WNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVY 178
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
++V + +AL+DMY+K GR++ A VFD M R W +L+ + + +EAL+
Sbjct: 179 RSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALK 238
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDNVRVCNTLMDVY 207
F M GVEPD +T+ SV++ CA + + G +H V K D F++++ + N L+D+Y
Sbjct: 239 IFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMY 298
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSF 266
++ I AR +F M R++VS S++ G+A V A F N+M K D +++
Sbjct: 299 AKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVK-----DVITW 353
Query: 267 TGALTACSHAGLIEDGLQYFDIMKK 291
+ C+ G E+ L F ++K+
Sbjct: 354 NALIAGCTQNGENEEALILFRLLKR 378
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 10/206 (4%)
Query: 89 GCADFP--------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFV 138
GC D N+ +++ + K G +D A +F+ M D W ++++GF
Sbjct: 68 GCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFE 127
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ F+EAL YF M G + + S L+ CA ++ L +G +H V + ++ +V
Sbjct: 128 QHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVY 187
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
+ + L+D+YS+ G +E+A+ VF M R+ VSWNS+I + NG V EAL+ F M K
Sbjct: 188 MGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCG 247
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQ 284
+ DEV+ ++AC+ I++G Q
Sbjct: 248 VEPDEVTLASVVSACATISAIKEGQQ 273
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 33/234 (14%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--- 94
S + + W + I+ ++G EA + F ++ P+H TF LL+ CA+
Sbjct: 343 SNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQ 402
Query: 95 --------------------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTA 132
++V V +L+DMY K G ++ VF M + C W A
Sbjct: 403 LGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNA 462
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
++ G+ + + +ALE F M SG PD++T+I VL C++ L G + R + Q
Sbjct: 463 MIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQH 522
Query: 193 ----FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR-TLVSWNSIIVGFAVN 241
KD+ ++D+ R G +E A+ + + M + + W S++ V+
Sbjct: 523 GLMPLKDHY---TCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVH 573
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
+LN CA R+ +H + K F + N L+DVY + GC++ AR++F RM +R
Sbjct: 25 LLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERN 84
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
+ SWNSII F +GF+ +A+ F M + D+ S+ ++ G ++ L YF
Sbjct: 85 IFSWNSIICAFTKSGFLDDAVHIFEKMP----QVDQCSWNSMISGFEQHGRFDEALVYFA 140
Query: 288 IM 289
M
Sbjct: 141 QM 142
>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
Length = 787
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 125/211 (59%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+ +VSTAL +Y + M+ A +FD M + + W A+++G+ + E A+ F++MQ
Sbjct: 347 DALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQ 406
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V+P+ +TI S L+ CA++ L +G W+HR + K+ + NV V L+D+Y++ G I
Sbjct: 407 ELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIA 466
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
AR +F RM + +VSWN++I G+ ++G EAL+ + M +F + ACS
Sbjct: 467 EARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACS 526
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H GL+++G + F +M YR++P IEH C+
Sbjct: 527 HGGLVDEGQKVFRVMTNEYRITPGIEHCTCM 557
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 7/186 (3%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYF-R 151
+ + V++AL +Y K R D A VFD + D W LL G EALE F R
Sbjct: 146 AADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPG----SEALEAFVR 201
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
++ V PD T+ S L A + +G +H Y K ++ V LM +YS+ G
Sbjct: 202 MVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCG 261
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ A+ +F RM LV++N++I G++VNG V ++E F + ++ + + +
Sbjct: 262 DMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIP 321
Query: 272 ACSHAG 277
S G
Sbjct: 322 VYSPFG 327
>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
Length = 751
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 143/280 (51%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
++ WT+ ++ ++G LEA F RMR G TF ++L+ C +
Sbjct: 243 SITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHA 302
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+NV V +AL+DMY+K + LA VF M R WTA++ G+ + EE
Sbjct: 303 YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEE 362
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F MQ+ G++PD T+ SV++ CAN+ +L G H + V N L+
Sbjct: 363 AVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVT 422
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y + G IE A ++F M VSW +++ G+A G E ++ F M K D V+
Sbjct: 423 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVT 482
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L+ACS AGL+E G YFD M+K + + P +H+ C+
Sbjct: 483 FIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCM 522
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 33/219 (15%)
Query: 100 VSTALLDMYAKFG----------RMDLATVV---------------------FDVM--RG 126
V + L+DMYAK G M+ TVV F +M R
Sbjct: 183 VGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRD 242
Query: 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186
WT ++ G + EAL+ FR M+ GV D T S+L C + G +H
Sbjct: 243 SITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHA 302
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
Y+ + ++DNV V + L+D+YS+ I A VF+RM R ++SW ++IVG+ N E
Sbjct: 303 YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEE 362
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
A+ F+ MQ K D+ + +++C++ +E+G Q+
Sbjct: 363 AVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQF 401
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 94/202 (46%), Gaps = 7/202 (3%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ P N+ ALL A + +F M R + AL+ GF +++
Sbjct: 73 EMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQL 132
Query: 150 FR-VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
+R +++ V P +T+ +++ V + + +G +H V + F V + L+D+Y+
Sbjct: 133 YRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYA 192
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G I AR+VFQ M +T+V +N++I G + +A F LM D +++T
Sbjct: 193 KMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLM----VDRDSITWTT 248
Query: 269 ALTACSHAGLIEDGLQYFDIMK 290
+T + GL + L F M+
Sbjct: 249 MVTGLTQNGLQLEALDVFRRMR 270
>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
Length = 708
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/279 (35%), Positives = 150/279 (53%), Gaps = 26/279 (9%)
Query: 48 WTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFPS----------- 95
WTS IS R+ EA F M R +G P TF T+L+ C +
Sbjct: 289 WTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKV 348
Query: 96 ------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEAL 147
NV+V ++L+DMY K G + + +FD M + W+ALL G+ + F+ +
Sbjct: 349 ITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVI 408
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH-RYVPKQDFKDNVRVCNTLMDV 206
+ FR M+ + D ++L CA + + G +H +Y+ K ++D V V + L+D+
Sbjct: 409 QIFRKME----KVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRD-VIVESALVDL 463
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ GCIE+A+ +F +M R L++WNS+I GFA NG EAL FN M K K D +SF
Sbjct: 464 YAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISF 523
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSH GL+++G +YF M K Y + IEH+ C+
Sbjct: 524 IGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCM 562
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 126/261 (48%), Gaps = 24/261 (9%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
+ + WTS IS + R G + + F +M YG P+ T ++ C++
Sbjct: 182 VKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRI 241
Query: 95 ----------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N ++++AL+DM+ + +D A +FD + D WT++++ + D+
Sbjct: 242 FHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDF 301
Query: 143 FEEALEYFRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
F+EAL +F MQ G+ PD T +VL C N+ L G +H V F NV V +
Sbjct: 302 FDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVES 361
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
+L+D+Y + G + ++++F RM + VSW++++ G+ NG ++ F M+ K
Sbjct: 362 SLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKME----KV 417
Query: 262 DEVSFTGALTACSHAGLIEDG 282
D F L C+ + G
Sbjct: 418 DLYCFGTILRTCAGLAAVRQG 438
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 94/188 (50%), Gaps = 6/188 (3%)
Query: 100 VSTALLDMYAKFGRMDLATV--VFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
V +LL +Y K G D VFD + D WT++++G+V+ +LE F M
Sbjct: 155 VGNSLLTLYFKLG-TDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLA 213
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
GVEP+ T+ +V+ C+ + L +G H V + F N + + L+D++ R ++
Sbjct: 214 YGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDD 273
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG-VFKTDEVSFTGALTACS 274
ARQ+F + + + W SII N F EAL +F MQ+ D +F LTAC
Sbjct: 274 ARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACG 333
Query: 275 HAGLIEDG 282
+ G ++ G
Sbjct: 334 NLGRLKQG 341
>gi|449527549|ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 487
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 123/212 (58%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+V+V T ++D Y K G ++ A V+FD M R W+A++ + + F E L FR M
Sbjct: 175 KDVVVWTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQM 234
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q + P+ I+SVL CA++ + GLWMH Y + N + L+D+YS+ G I
Sbjct: 235 QKKNIVPNDSVIVSVLTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYI 294
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A +VF+ + + +WN++I GFA+ G V ++LE F+ M + E +F L AC
Sbjct: 295 ESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATFVSILAAC 354
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+HA ++E GL++FD M +YRV PQ EH+ C+
Sbjct: 355 THAKMVERGLEFFDQMYPVYRVQPQFEHYACV 386
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 89/198 (44%), Gaps = 20/198 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
+ W++ ++ + R E F +M+ P+ V++L+ CA +
Sbjct: 208 VISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIVSVLTACAHLGAITQGLWMHS 267
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
+N +++TAL+DMY+K G ++ A VF+ + D W A+++GF +
Sbjct: 268 YAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVVK 327
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLM 204
+LE F M SG + T +S+L C + + + GL + + P + ++
Sbjct: 328 SLELFDKMIASGTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQFEHYACVV 387
Query: 205 DVYSRFGCIEFARQVFQR 222
D+ +R G +E A + +
Sbjct: 388 DLMARAGMVEDAEKFVEE 405
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 136/217 (62%), Gaps = 3/217 (1%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEY 149
+ PS NV+ + ++ YAK G +D A + FD D W A+++G+V+ F+E+L
Sbjct: 167 EIPSLNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYL 226
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYS 208
FR+MQ++ + PD +S+L+ CA++ L IG+W+H+++ + +VR+ +L+D+Y+
Sbjct: 227 FRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQLKLVPLSVRLSTSLLDMYA 286
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G +E A+++F M+ R +V WN++I G A++G AL+ F M+K K D+++F
Sbjct: 287 KCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVKPDDITFIA 346
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
TACS++G+ +GL D M +Y + P+ EH+GC+
Sbjct: 347 VFTACSYSGMAYEGLMLLDKMCSVYNIVPKSEHYGCL 383
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 95/212 (44%), Gaps = 37/212 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMV------- 100
W + IS + ++ C E+ F M+L P FV++LS CA + + V
Sbjct: 207 WGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHLN 266
Query: 101 -----------STALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEAL 147
ST+LLDMYAK G ++LA +FD M D W A+++G + AL
Sbjct: 267 QLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGAL 326
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-------HRYVPKQDFKDNVRVC 200
+ F M+ GV+PD +T I+V C+ GL + + VPK +
Sbjct: 327 KLFYDMEKVGVKPDDITFIAVFTACSYSGMAYEGLMLLDKMCSVYNIVPKSEHY------ 380
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
L+D+ SR G E A + +++ SWN
Sbjct: 381 GCLVDLLSRAGLFEEAMVMIRKITN----SWN 408
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 31/185 (16%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
+ L+ F+ + F+ AL+ F M S ++PD TI VL C G +H Y
Sbjct: 75 YNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHDCSFGKMIHGYSS 134
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA---------- 239
K ++ V N+LM +Y FG + AR VF + +VSW+ +I G+A
Sbjct: 135 KLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARL 194
Query: 240 ----------------VNGFV-----GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
++G+V E+L F LMQ DE F L+AC+H G
Sbjct: 195 FFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGA 254
Query: 279 IEDGL 283
+E G+
Sbjct: 255 LEIGV 259
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 156/319 (48%), Gaps = 57/319 (17%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
V W I+ + ++G +EA F RM G P +T +++S CA +
Sbjct: 221 NVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIH 280
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--------------------- 124
N++++ AL+DMYAK GR++ A VFD M
Sbjct: 281 ARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASV 340
Query: 125 ------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC 172
+ W AL+ G+ + EEAL FR+++ V P + T ++LN
Sbjct: 341 KAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNAS 400
Query: 173 ANVRTLGIGLWMHRYVPKQDFK------DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
AN+ L +G H +V K F+ ++ V N+L+D+Y + G +E +VF+ M ++
Sbjct: 401 ANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEK 460
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
VSWN++I+G+A NG+ EALE F M + K D V+ G L ACSHAGL+E+G +YF
Sbjct: 461 DHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYF 520
Query: 287 DIMKKIYRVSPQIEHHGCI 305
M K + + P +H+ C+
Sbjct: 521 FSMTKEHGLLPVKDHYTCM 539
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 107/191 (56%), Gaps = 4/191 (2%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYF-RVM 153
NV +++ ++G +D + +F +M D W +++ GF + D FEEAL++F R+
Sbjct: 89 NVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMH 148
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ V DY + S L+ C+ ++ L +G +H + K + +V + + L+D YS+ G +
Sbjct: 149 RDDFVLNDY-SFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLV 207
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
AR+VF M ++ +VSWN +I + NG EALE F M + FK DEV+ ++AC
Sbjct: 208 GCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSAC 267
Query: 274 SHAGLIEDGLQ 284
+ ++G+Q
Sbjct: 268 ATLAAFKEGVQ 278
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 24/264 (9%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------- 94
W S I+ + EA F RM + +F + LS C+
Sbjct: 124 WNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLIS 183
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
S +V + + L+D Y+K G + A VFD M + W L+ + + EALE
Sbjct: 184 KSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALE 243
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDNVRVCNTLMDVY 207
F M G +PD +T+ SV++ CA + G+ +H V K D F++++ + N L+D+Y
Sbjct: 244 AFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMY 303
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
++ G + AR VF RM R VS +++ G+A + V A F ++ + D VS+
Sbjct: 304 AKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIK----QKDIVSWN 359
Query: 268 GALTACSHAGLIEDGLQYFDIMKK 291
+ + G E+ L F ++K+
Sbjct: 360 ALIAGYTQNGENEEALGLFRMLKR 383
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 31/162 (19%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D +L++C +R+ +H + + F + V + N L+DVY + G +++AR+VF
Sbjct: 23 DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82
Query: 221 QRMHKRTL-------------------------------VSWNSIIVGFAVNGFVGEALE 249
RM +R + SWNS+I GFA + EAL+
Sbjct: 83 DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+F M + F ++ SF L+ACS ++ G Q ++ K
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISK 184
>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03880, mitochondrial; Flags: Precursor
gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 151/278 (54%), Gaps = 20/278 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLY-GTNPSHITFVTLLSGCADFP--------- 94
+ WT+ IS + + I + ALE + L P+ T+ ++L C
Sbjct: 127 VISWTTMISAYSKCK-IHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGI 185
Query: 95 -----SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEAL 147
++V V +AL+D++AK G + A VFD M D W +++ GF + + AL
Sbjct: 186 IKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVAL 245
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
E F+ M+ +G + T+ SVL C + L +G+ H ++ K D ++ + N L+D+Y
Sbjct: 246 ELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLILNNALVDMY 303
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
+ G +E A +VF +M +R +++W+++I G A NG+ EAL+ F M+ K + ++
Sbjct: 304 CKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIV 363
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSHAGL+EDG YF MKK+Y + P EH+GC+
Sbjct: 364 GVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCM 401
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 11/186 (5%)
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L++MY KF ++ A +FD M R WT +++ + K ++ALE +M V P+
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPN 161
Query: 162 YLTIISVLNVC---ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
T SVL C ++VR L G + K+ + +V V + L+DV+++ G E A
Sbjct: 162 VYTYSSVLRSCNGMSDVRMLHCG------IIKEGLESDVFVRSALIDVFAKLGEPEDALS 215
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF M + WNSII GFA N ALE F M++ F ++ + T L AC+ L
Sbjct: 216 VFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLAL 275
Query: 279 IEDGLQ 284
+E G+Q
Sbjct: 276 LELGMQ 281
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 131 TALLNGFVKRDY---FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
T LL+ F + Y A++ +Q G+ D T ++ C + R + G + R+
Sbjct: 27 TLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRH 86
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
+ + + + N L+++Y +F + A Q+F +M +R ++SW ++I ++ +A
Sbjct: 87 LYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKA 146
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACS--------HAGLIEDGLQ 284
LE LM + + + +++ L +C+ H G+I++GL+
Sbjct: 147 LELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLE 191
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV------ 98
V W + I+ H ++G + F M G P T+ ++L CA + + N
Sbjct: 442 AVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHN 501
Query: 99 -----------MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
V AL+DMY+K G M+ A + D + + W A+++GF + EE
Sbjct: 502 RIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEE 561
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A + F M GV+PD T ++L+ CAN+ T+ +G +H + K++ + + + +TL+D
Sbjct: 562 AQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVD 621
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ G ++ + +F++ R V+WN+++ G+A +G EAL+ F MQ K + +
Sbjct: 622 MYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHAT 681
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L AC H GL+E GL YF M Y + PQ+EH+ C+
Sbjct: 682 FLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCV 721
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 123/258 (47%), Gaps = 19/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V W S IS + +G + F +M GT TF +L C+ +
Sbjct: 140 VSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGL 199
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+V+ +ALLDMYAK ++D + F M ++ W+A++ G V+ D
Sbjct: 200 AVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGG 259
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F+ MQ +GV T SV CA + L +G +H + K DF +V + +D+
Sbjct: 260 LELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDM 319
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + + A+++F + L S+N+IIVG+A + EAL F L+QK DEVS
Sbjct: 320 YMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSL 379
Query: 267 TGALTACSHAGLIEDGLQ 284
+GA AC+ +GLQ
Sbjct: 380 SGAFRACAVIKGDLEGLQ 397
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 3/199 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+N+ V+ A+LDMY K G + A +VF+ M R W A++ + E+ L F M
Sbjct: 409 SNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWM 468
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
SG+EPD T SVL CA + L G+ +H + K + V L+D+YS+ G +
Sbjct: 469 LQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMM 528
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A ++ R+ ++T+VSWN+II GF++ EA + F+ M + D ++ L C
Sbjct: 529 EKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTC 588
Query: 274 SHAGLIEDGLQ-YFDIMKK 291
++ +E G Q + I+KK
Sbjct: 589 ANLVTVELGKQIHAQIIKK 607
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 116/253 (45%), Gaps = 29/253 (11%)
Query: 46 VQWTSSISRHCRSGCI----LEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPS----- 95
V W++ I+ GC+ L LE F M+ G S TF ++ CA +
Sbjct: 241 VSWSAIIA-----GCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGS 295
Query: 96 ------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
+V++ TA LDMY K + A +F+ + + + A++ G+ + D
Sbjct: 296 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSD 355
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
EAL FR++Q SG+ D +++ CA ++ GL +H K + N+ V N
Sbjct: 356 KGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVAN 415
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
++D+Y + G + A VF+ M R VSWN+II NG + L F M + +
Sbjct: 416 AILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEP 475
Query: 262 DEVSFTGALTACS 274
DE ++ L AC+
Sbjct: 476 DEFTYGSVLKACA 488
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 88/220 (40%), Gaps = 33/220 (15%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVM--------------------------------- 124
V V+ L+ MY K ++ A VFD M
Sbjct: 77 VFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPE 136
Query: 125 RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM 184
R W +L++G++ + ++ F M G D T VL C+++ G G+ +
Sbjct: 137 RDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQI 196
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
H K F +V + L+D+Y++ ++ + Q F M ++ VSW++II G N +
Sbjct: 197 HGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDL 256
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
LE F MQK + +F +C+ + G Q
Sbjct: 257 RGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQ 296
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T + C++ + L G H + +FK V V N L+ +Y + +EFA +VF M
Sbjct: 44 TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+R VSWN+++ G+A G +G A + F+ M + D VS+ ++ H G
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMP----ERDVVSWNSLISGYLHNG 153
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 147/311 (47%), Gaps = 50/311 (16%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
T W I + +G +A L + M G +P TF ++ C D +
Sbjct: 95 TFTWNFMIRAYNYNGNSQQALLLYNLMICEGFSPDKFTFPFVIKACLDHSALDKGKEVHG 154
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFD------------------------- 122
+ +S L+D+Y K G +D A +FD
Sbjct: 155 FAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVSWTTFVAGLVACGELDT 214
Query: 123 --------VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
MR WTA++NG+VK +EA E F+ MQ++ V P+ T++ +L C
Sbjct: 215 ARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANVRPNGFTLVGLLRACTE 274
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ +L +G +H Y + FK V + L+D+YS+ G IE A++VF+ M K++L +WNS+
Sbjct: 275 LGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKVFEEMQKKSLATWNSM 334
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I V+GF EAL F M++ + D ++F G L AC + +E G +YF M + Y
Sbjct: 335 ITSLGVHGFGKEALALFAQMEEANVRPDAITFVGVLFACVNTNNVEAGYRYFKYMTEHYG 394
Query: 295 VSPQIEHHGCI 305
++P +EH+ C+
Sbjct: 395 ITPMLEHYTCM 405
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 42/245 (17%)
Query: 75 GTNPSHITFVTLLSGCADFPSNNV----MVSTALLDMYAKFGRMDLATVVFDVMRGCDF- 129
G+N +H+ V A NN+ ++ LL + + ++D AT++FD ++
Sbjct: 42 GSNFTHVKLVQ-----AKIIRNNLSDDQLLVRKLLRLCFSYQKVDYATLIFDQIQNPHTF 96
Query: 130 -WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
W ++ + ++AL + +M G PD T V+ C + L G +H +
Sbjct: 97 TWNFMIRAYNYNGNSQQALLLYNLMICEGFSPDKFTFPFVIKACLDHSALDKGKEVHGFA 156
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA--------- 239
K F + + NTLMD+Y + G +++AR++F +M R++VSW + + G
Sbjct: 157 IKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVSWTTFVAGLVACGELDTAR 216
Query: 240 -----------------VNGFVG-----EALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+NG+V EA E F MQ + + + G L AC+ G
Sbjct: 217 AAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANVRPNGFTLVGLLRACTELG 276
Query: 278 LIEDG 282
+E G
Sbjct: 277 SLELG 281
>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 630
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 151/278 (54%), Gaps = 20/278 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLY-GTNPSHITFVTLLSGCADFP--------- 94
+ WT+ IS + + I + ALE + L P+ T+ ++L C
Sbjct: 127 VISWTTMISAYSKCK-IHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGI 185
Query: 95 -----SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEAL 147
++V V +AL+D++AK G + A VFD M D W +++ GF + + AL
Sbjct: 186 IKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVAL 245
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
E F+ M+ +G + T+ SVL C + L +G+ H ++ K D ++ + N L+D+Y
Sbjct: 246 ELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLILNNALVDMY 303
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
+ G +E A +VF +M +R +++W+++I G A NG+ EAL+ F M+ K + ++
Sbjct: 304 CKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIV 363
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSHAGL+EDG YF MKK+Y + P EH+GC+
Sbjct: 364 GVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCM 401
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 11/186 (5%)
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L++MY KF ++ A +FD M R WT +++ + K ++ALE +M V P+
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPN 161
Query: 162 YLTIISVLNVC---ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
T SVL C ++VR L G + K+ + +V V + L+DV+++ G E A
Sbjct: 162 VYTYSSVLRSCNGMSDVRMLHCG------IIKEGLESDVFVRSALIDVFAKLGEPEDALS 215
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF M + WNSII GFA N ALE F M++ F ++ + T L AC+ L
Sbjct: 216 VFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLAL 275
Query: 279 IEDGLQ 284
+E G+Q
Sbjct: 276 LELGMQ 281
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 131 TALLNGFVKRDY---FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
T LL+ F + Y A++ +Q G+ D T ++ C + R + G + R+
Sbjct: 27 TLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRH 86
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
+ + + + N L+++Y +F + A Q+F +M +R ++SW ++I ++ +A
Sbjct: 87 LYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKA 146
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACS--------HAGLIEDGLQ 284
LE LM + + + +++ L +C+ H G+I++GL+
Sbjct: 147 LELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLE 191
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 132/211 (62%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
NV++ ++D + G + A +FD M R W +++G+ + +F EA+ F+ MQ
Sbjct: 203 NVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQ 262
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
S ++P+Y+T++SVL A + L +G W+H Y K + + + + L+D+YS+ G I+
Sbjct: 263 SSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSID 322
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A QVF+ + KR ++W++II FA++G +A+ +F+LM K ++V++ G L+ACS
Sbjct: 323 EALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACS 382
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
HAGL+E+G +F M K+ + P+IEH+GC+
Sbjct: 383 HAGLVEEGRSFFSHMVKVVGLQPRIEHYGCM 413
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 96/200 (48%), Gaps = 20/200 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V W IS + ++G +EA F M+ +P+++T V++L A +
Sbjct: 234 SVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIH 293
Query: 96 -----NNV----MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
N + ++ +AL+DMY+K G +D A VF+ + R W+A++ F E
Sbjct: 294 LYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAE 353
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNVRVCNTL 203
+A+ +F +M +GV P+ + I +L+ C++ + G ++ K + + +
Sbjct: 354 DAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCM 413
Query: 204 MDVYSRFGCIEFARQVFQRM 223
+D+ R G +E A ++ + M
Sbjct: 414 VDLLGRAGHLEEAEELIRNM 433
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 85/222 (38%), Gaps = 53/222 (23%)
Query: 114 MDLATVVFDVMR--GCDFWTALLNGFVKRD---YFEEALEYFRVMQISG-VEPDYLTIIS 167
+D A VF M C W +L + + EAL F M G V+P+ T S
Sbjct: 68 IDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDN-------VR---VCNTLMDVYS--------- 208
VL CA L G +H + K F ++ VR +C + D YS
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187
Query: 209 ----------------------------RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAV 240
R G I+ A+ +F M +R++VSWN +I G+A
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQ 247
Query: 241 NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
NG EA+ F MQ + V+ L A + G +E G
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG 289
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 151/280 (53%), Gaps = 25/280 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH--ITFVTLLSGCA----------- 91
TV W S + ++G + +A RL+ P I++ T+L G A
Sbjct: 185 TVSWNSMLGGLVKAGELRDAR------RLFDEMPQRDLISWNTMLDGYARCREMSKAFEL 238
Query: 92 --DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKRDYFEE 145
P N + + ++ Y+K G M++A V+FD M + WT ++ G+ ++ +E
Sbjct: 239 FEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKE 298
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A M SG++ D +IS+L C L +G+ +H + + + N V N L+D
Sbjct: 299 ADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLD 358
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G ++ A VF + K+ LVSWN+++ G V+G EA+E F+ M++ + D+V+
Sbjct: 359 MYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVT 418
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L +C+HAGLI++G+ YF M+K+Y + PQ+EH+GC+
Sbjct: 419 FIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCL 458
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+A F MQ G+ D T +L C+ L + MH ++ K ++ V N L+
Sbjct: 100 QAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALI 159
Query: 205 DVYSRFG--CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
D YSR G + A ++F++M +R VSWNS++ G G + +A F+ M + D
Sbjct: 160 DCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMP----QRD 215
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
+S+ L + + + F+ M + VS
Sbjct: 216 LISWNTMLDGYARCREMSKAFELFEKMPERNTVS 249
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 135/227 (59%), Gaps = 3/227 (1%)
Query: 81 ITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFV 138
+T+ ++SG + +V+ TA++ + G++D A F M D WTA+++G++
Sbjct: 181 VTWNAMISG-YNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYL 239
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ + ++EAL FR MQ S ++PD T++SVL CA + L +G W+ Y+ K K++
Sbjct: 240 RLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTF 299
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V N L+D+Y + G +E A +F + +R +W +++VG A+NG EAL F+ M K
Sbjct: 300 VGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKAS 359
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
DEV++ G L+AC+H G++++G ++F M + + P I H+GC+
Sbjct: 360 VTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCM 406
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 82/223 (36%), Gaps = 50/223 (22%)
Query: 110 KFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
+FG M A +FD + W + G+ + + + + M V+PD T
Sbjct: 60 EFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPF 119
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
+ L +G +H +V K NV N L+++YS G I+ AR +F K
Sbjct: 120 LFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSD 179
Query: 228 LVSWNSIIVGF------------AVNGFVG------------------------------ 245
+V+WN++I G+ V GFV
Sbjct: 180 VVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYL 239
Query: 246 ------EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
EAL F MQ K DE + LTAC+ G +E G
Sbjct: 240 RLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELG 282
>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
Length = 605
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 152/282 (53%), Gaps = 28/282 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEF--TRMRLYGTNPSHITFVTLLSGCADFP--------- 94
V WT+ IS R+ + E AL F + R + P + TF ++L+ C +
Sbjct: 229 VCWTTVISAFTRND-LYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIH 287
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
S NV+ ++L+DMY K G ++ + +FD M R W+ALL + +E
Sbjct: 288 AKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYE 347
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH-RYVPKQDFKDNVRVCNTL 203
+A+ FR M+ E D + +V+ CA + + G +H +Y+ K ++D V V + L
Sbjct: 348 KAVNLFREMK----EVDLYSFGTVIRACAGLAAVTPGKEIHCQYIRKGGWRD-VIVESAL 402
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ GCI FA +VF RM R L++WNS+I GFA NG G A++ F M K K D
Sbjct: 403 VDLYAKCGCINFAYRVFDRMPTRNLITWNSMIHGFAQNGSSGIAIQIFEAMIKEGIKPDC 462
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+SF G L ACSH GL++ YFD+M Y + P +EH+ C+
Sbjct: 463 ISFIGLLFACSHTGLVDQARHYFDLMTGKYGIKPGVEHYNCM 504
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 126/280 (45%), Gaps = 23/280 (8%)
Query: 25 LKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH-ITF 83
LK+ S + N K + +++ S I + C+SG + +A + LY + + + +
Sbjct: 5 LKRHCSSSFTSQNFKYSTHPSIK-LSQILQFCKSGLLNDALHLLNSIDLYDSRINKPLLY 63
Query: 84 VTLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATV-VFDVMR 125
+LL C S + V +LL +Y K G L T VFD +
Sbjct: 64 ASLLQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLGSDSLLTRRVFDGLF 123
Query: 126 GCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
D W +++ G+V+ A+E F M SG+EP+ T+ +V+ C+ + L +G
Sbjct: 124 VKDVVSWASMITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLGKC 183
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
H V ++ F N + ++L+D+Y R ARQ+F + + V W ++I F N
Sbjct: 184 FHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDL 243
Query: 244 VGEALEYFNLMQKG-VFKTDEVSFTGALTACSHAGLIEDG 282
EAL +F L + D +F LTAC + G + G
Sbjct: 244 YEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQG 283
>gi|18873857|gb|AAL79803.1|AC079874_26 putative pentatricopeptide repeat domain containing protein [Oryza
sativa Japonica Group]
Length = 391
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 128/212 (60%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
++ V++ ++DMY K G +D A + D + G W A+L+GF EEA ++F M
Sbjct: 13 SDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEM 72
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
G++PD+ T +VL+ CAN+ T+ +G +H + KQ+ D+ + +TL+D+Y++ G +
Sbjct: 73 LDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDM 132
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ VF+++ KR VSWN++I G+A++G EAL F MQK + +F L AC
Sbjct: 133 PDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRAC 192
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH GL +DG +YF +M Y++ PQ+EH C+
Sbjct: 193 SHVGLFDDGCRYFHLMTTHYKLEPQLEHFACM 224
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 19/150 (12%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V W + +S + EA F+ M G P H TF T+L CA+ +
Sbjct: 46 VVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHG 105
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
++ +S+ L+DMYAK G M + +VF+ + DF W A++ G+ E
Sbjct: 106 QIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVE 165
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANV 175
AL F MQ V P++ T ++VL C++V
Sbjct: 166 ALRMFERMQKENVVPNHATFVAVLRACSHV 195
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H V K + V +T++D+Y + G I+ A+++ R+ + +VSWN+I+ GF++N
Sbjct: 2 VHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKE 61
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
EA ++F+ M K D +F L C++ IE G Q
Sbjct: 62 SEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ 102
>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 615
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 141/262 (53%), Gaps = 20/262 (7%)
Query: 63 EAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN---------VMVSTA--------LL 105
EAA F RM G P TFV+LL CA + V V A L+
Sbjct: 125 EAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLI 184
Query: 106 DMYAKFGRMDLATVVFDVMRG-CDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
+MYA+ G A +F + G C + A++ V+ EAL FR MQ G++ +
Sbjct: 185 NMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSV 244
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T+ISVL+ CA + L +G W+H YV K V+V L+D+Y + G +E A VFQ M
Sbjct: 245 TLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGM 304
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
R +W+ +IV +A + + EA+ F M+K K D+V+F G L ACSH+GL+ +GL
Sbjct: 305 ESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGL 364
Query: 284 QYFDIMKKIYRVSPQIEHHGCI 305
QYFD M++ + + P I+H+GC+
Sbjct: 365 QYFDSMRE-FGLVPGIKHYGCV 385
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 24/225 (10%)
Query: 79 SHITFVT-LLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD---FWTALL 134
+H FVT LL+ C D + AK ++ A VFD + G ++ LL
Sbjct: 61 AHPAFVTRLLTLCTDQGA-------------AKPAQLSYARQVFDRIPGPGDVVWYNTLL 107
Query: 135 NGFVK-------RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
G+ + R EEA F M GV PD T +S+L CA R G H
Sbjct: 108 RGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGV 167
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
K ++ V TL+++Y+ G AR +F R+ +VS+N++I + GEA
Sbjct: 168 AVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEA 227
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
L F MQ K V+ L+AC+ G +E G + ++K+
Sbjct: 228 LVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKV 272
>gi|255575758|ref|XP_002528778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531781|gb|EEF33600.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 518
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 133/217 (61%), Gaps = 3/217 (1%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ PS +V+ ++D YAK + +A +F+ M R W +L ++K + E L+
Sbjct: 278 NMPSRDVVSWNCMIDGYAKIRNVSVARWLFNQMPFRNIVSWNIMLALYLKCKNYGECLKL 337
Query: 150 F-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F R+++ + P+ +++SVL CAN R L +G W+H Y+ + + + + L+ +Y+
Sbjct: 338 FDRMIEERELRPNKASLMSVLTACANFRRLDLGKWIHSYIKDNEVESDELLSTALLTMYA 397
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G ++FAR +F +M +++VSWNS+I+G+A+NG +ALE F M+K + +F
Sbjct: 398 KCGMMDFARHIFTKMPHKSVVSWNSMIMGYAINGHAEKALETFLEMEKSSMMPNAATFVS 457
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSHA L+ +G YFD+M++ Y++ P++EH GC+
Sbjct: 458 VLSACSHAELLLEGWWYFDLMQRKYKIEPKVEHCGCM 494
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
Y+ M V P+ T ++ VCA++ +L G H V K F+ + V N+L+ +YS
Sbjct: 143 YYDKMIAKWVLPNRYTFPLLVKVCADIGSLKEGQKAHACVVKFGFEFDAYVRNSLLHMYS 202
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
G + AR +F+ LVSWNS+I+G+ NG +G A E F+ M + D S+
Sbjct: 203 ACGRVLDARLLFESGFVLDLVSWNSMIIGYVKNGDIGLARELFDEMP----ERDAFSWNS 258
Query: 269 ALTACSHAGLIEDGLQYFDIM 289
++ AG +E + FD M
Sbjct: 259 MISGYVGAGDVEAAKKLFDNM 279
>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 155/286 (54%), Gaps = 32/286 (11%)
Query: 48 WTSSISRHCRSGCILEAALE-FTRMRLYGT-NPSHITFVTLLSGCA-------------- 91
W + I RS E A+E F RM G+ P TF LL CA
Sbjct: 92 WNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQ 151
Query: 92 ------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
D +V V +L+ +YA G + +A VF+ M R W +++ +V+ F
Sbjct: 152 IFKLGLDL---DVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLF 208
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD---FKDNVRVC 200
E AL+ F MQ S EPD T+ S+++ CA + L +G+W H YV ++ +V +
Sbjct: 209 ENALKLFVEMQNS-FEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLIN 267
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVF 259
++L+D+YS+ G + A+QVF+ M K L SWNS+I+ A++G AL+ F+ L++ F
Sbjct: 268 SSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQCFSRLVEMEKF 327
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ V+F G L+AC+H G++ DG +YFD+M Y++ P++EH+GC+
Sbjct: 328 LPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCL 373
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 32/225 (14%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--- 95
K + + V W I + +SG A F M+ P T +++S CA +
Sbjct: 186 KMPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQ-NSFEPDGYTMQSIVSACAGIGALSL 244
Query: 96 -----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNG 136
+V+++++L+DMY+K G + +A VF+ M D W +++
Sbjct: 245 GMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILA 304
Query: 137 FVKRDYFEEALEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDF 193
+ AL+ F R++++ P+ +T + VL+ C + + G +Y D+
Sbjct: 305 LAMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADG---RKYFDMMVNDY 361
Query: 194 KDNVRVCN--TLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
K R+ + L+D+ SR G I+ A ++ MH K V W S++
Sbjct: 362 KIEPRLEHYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLL 406
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 145/280 (51%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WT+ I R+G EA + F M+ G + +T V++L
Sbjct: 170 VTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGL 229
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+V + ++L+DMY K D A VFD M R WTAL+ G+V+ F++
Sbjct: 230 YLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDK 289
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+ F M S V P+ T+ SVL+ CA+V L G +H Y+ K + N TL+D
Sbjct: 290 GMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLID 349
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y + GC+E A VF+R+H++ + +W ++I GFA +G+ +A + F M +EV+
Sbjct: 350 LYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVT 409
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L+AC+H GL+E+G + F MK + + P+ +H+ C+
Sbjct: 410 FMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACM 449
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 129 FWTALLNGFVKRDYFEEALEY--FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186
W +L+ F L + +R M+ +GV P T +L +R H
Sbjct: 69 LWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHA 127
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
++ K + V N+L+ YS G +FA ++F + +V+W ++I GF NG E
Sbjct: 128 HIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASE 187
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
A+ YF M+K +E++ L A AG +ED
Sbjct: 188 AMVYFVEMKKTGVAANEMTVVSVLKA---AGKVED 219
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 152/327 (46%), Gaps = 62/327 (18%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC---------- 90
T +T W I H RS ++ F RM L G + T+ LLS C
Sbjct: 86 TAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGE 145
Query: 91 -------------------------------ADF------------PSNNVMVSTALLDM 107
DF P +NV+ +LL
Sbjct: 146 QIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRALYLFDEMPDSNVVGWNSLLAG 205
Query: 108 YAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
Y + G D A VFD M R WT ++ GF + + AL F M+ +GVE D + +
Sbjct: 206 YVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVAL 265
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPK----QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
++ L+ CA + L +G W+H YV + + V + N L+ +Y+ G ++ A ++F+
Sbjct: 266 VAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFE 325
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM---QKGVFKTDEVSFTGALTACSHAGL 278
+ +R VSW+SII GFA G EA+ F LM + + DE++F GALTACSHAGL
Sbjct: 326 EIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGL 385
Query: 279 IEDGLQYFDIMKKIYRVSPQIEHHGCI 305
I DG++ F M K + V PQIEH+GC+
Sbjct: 386 ISDGIRLFQSMHKTFGVIPQIEHYGCM 412
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
I SVL C + R L H + F + N L+ +Y FG + A++VF+ +
Sbjct: 30 IFSVLKSCVSFRNLAK---THAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDIT 86
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ WN II G + +++E F M + + +++ L+AC + L +G Q
Sbjct: 87 APSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQ 146
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 149/280 (53%), Gaps = 18/280 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T V W + I ++G EA F +M G P+ +T + +L CA+
Sbjct: 311 TVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVH 370
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF-WTALLNGFVKRDYFEE 145
+NV V +L+ MY+K R+D+A +F+ + + W A++ G+ + +E
Sbjct: 371 KLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNVTWNAMILGYAQNGCVKE 430
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL F +MQ G++ D T++ V+ A+ W+H + +NV V L+D
Sbjct: 431 ALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVD 490
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G I+ AR++F M +R +++WN++I G+ +G E L+ FN MQKG K ++++
Sbjct: 491 MYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDIT 550
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F ++ACSH+G +E+GL F M++ Y + P ++H+ +
Sbjct: 551 FLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAM 590
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 115/200 (57%), Gaps = 4/200 (2%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+N+ V TA++ +YAK ++D A +F+ M+ D WT L+ G+ + + + AL+ M
Sbjct: 178 SNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQM 237
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q +G +PD +T++S+L A+++ L IG +H Y + F+ V V N L+D+Y + G
Sbjct: 238 QEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSA 297
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTA 272
AR VF+ M +T+VSWN++I G A NG EA F ++ +G T V+ G L A
Sbjct: 298 RIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPT-RVTMMGVLLA 356
Query: 273 CSHAGLIEDGLQYFDIMKKI 292
C++ G +E G ++ K+
Sbjct: 357 CANLGDLERGWFVHKLLDKL 376
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 2/181 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFD-VMRGCD-FWTALLNGFVKRDYFEEALEYFRVM 153
N + T ++ ++ KFG A VF+ V D + +L G+ K +AL +F M
Sbjct: 77 NEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRM 136
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
V +L +C L G +H + F+ N+ V +M +Y++ I
Sbjct: 137 MCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQI 196
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ A ++F+RM + LVSW +++ G+A NG AL+ MQ+ K D V+ L A
Sbjct: 197 DNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAV 256
Query: 274 S 274
+
Sbjct: 257 A 257
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV------ 98
V W + I+ H ++G + F M G P T+ ++L CA + + N
Sbjct: 379 AVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHN 438
Query: 99 -----------MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
V AL+DMY+K G M+ A + D + + W A+++GF + EE
Sbjct: 439 RIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEE 498
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A + F M GV+PD T ++L+ CAN+ T+ +G +H + K++ + + + +TL+D
Sbjct: 499 AQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVD 558
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ G ++ + +F++ R V+WN+++ G+A +G EAL+ F MQ K + +
Sbjct: 559 MYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHAT 618
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L AC H GL+E GL YF M Y + PQ+EH+ C+
Sbjct: 619 FLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCV 658
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 3/199 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+N+ V+ A+LDMY K G + A +VF+ M R W A++ + E+ L F M
Sbjct: 346 SNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWM 405
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
SG+EPD T SVL CA + L G+ +H + K + V L+D+YS+ G +
Sbjct: 406 LQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMM 465
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A ++ R+ ++T+VSWN+II GF++ EA + F+ M + D ++ L C
Sbjct: 466 EKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTC 525
Query: 274 SHAGLIEDGLQ-YFDIMKK 291
++ +E G Q + I+KK
Sbjct: 526 ANLVTVELGKQIHAQIIKK 544
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 4/186 (2%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRM-DLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
DF +V++ TA LDMY K + D + +F+ + + + A++ G+ + D EAL
Sbjct: 241 DF-GTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALG 299
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
FR++Q SG+ D +++ CA ++ GL +H K + N+ V N ++D+Y
Sbjct: 300 MFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYG 359
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G + A VF+ M R VSWN+II NG + L F M + + DE ++
Sbjct: 360 KCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGS 419
Query: 269 ALTACS 274
L AC+
Sbjct: 420 VLKACA 425
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 97/258 (37%), Gaps = 71/258 (27%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQI 155
V V+ L+ MY K + A VFD M R W A+L G+ R A + F M
Sbjct: 77 VFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPG 136
Query: 156 SG---VEP------------DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
+G VE D T VL C+++ G G+ +H K F +V
Sbjct: 137 TGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTG 196
Query: 201 NTLMDVYSRF--------GCIEFARQV--------------------------------- 219
+ L+D+Y++ G +E +++
Sbjct: 197 SALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMY 256
Query: 220 -------------FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
F + L S+N+IIVG+A + EAL F L+QK DEVS
Sbjct: 257 MKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSL 316
Query: 267 TGALTACSHAGLIEDGLQ 284
+GA AC+ +GLQ
Sbjct: 317 SGAXRACAVIKGDLEGLQ 334
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T + C++ + L G H + +FK V V N L+ +Y + + FA +VF M
Sbjct: 44 TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGM 103
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+R VSWN+++ G+A G +G A + F+ M
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAM 134
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 152/279 (54%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ W+ I+R+ +S EA F RMR P++ TF ++L CA S
Sbjct: 304 IPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSC 363
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+NV VS A++D+YAK G ++ + +F+ + R W ++ G+V+ E A
Sbjct: 364 VLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERA 423
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ F M ++P +T SVL A++ L GL +H K + + V N+L+D+
Sbjct: 424 MNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDM 483
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G I AR F +M+KR VSWN++I G++++G EAL F++MQ K ++++F
Sbjct: 484 YAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTF 543
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L+ACS+AGL+ G +F+ M K Y + P IEH+ C+
Sbjct: 544 VGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCM 582
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 129/259 (49%), Gaps = 21/259 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPSNNV------ 98
V WT ++ + + C E +L+ F +MR+ G P++ T L C + NV
Sbjct: 203 VSWTGMVACYAEN-CFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHG 261
Query: 99 -----------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
V ALL++YAK G + A +F+ M D W+ ++ + + D +E
Sbjct: 262 CALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKE 321
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL+ F M+ + V P+ T SVL CA+ +L +G +H V K NV V N +MD
Sbjct: 322 ALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMD 381
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
VY++ G IE + ++F+ + R V+WN+IIVG+ G A+ F M + + EV+
Sbjct: 382 VYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVT 441
Query: 266 FTGALTACSHAGLIEDGLQ 284
++ L A + +E GLQ
Sbjct: 442 YSSVLRASASLAALEPGLQ 460
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 100/190 (52%), Gaps = 2/190 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+ V TAL+D Y+ G +D+A VFD + D WT ++ + + ++EE+L+ F M+
Sbjct: 170 DAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMR 229
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
I G +P+ TI L C + +G +H K + ++ V L+++Y++ G I
Sbjct: 230 IMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEII 289
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A+++F+ M K L+ W+ +I +A + EAL+ F M++ + +F L AC+
Sbjct: 290 DAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACA 349
Query: 275 HAGLIEDGLQ 284
+ ++ G Q
Sbjct: 350 SSVSLDLGKQ 359
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 18/212 (8%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
S ++ LL+ Y + + A+ +FD M + + L G+ + F +AL +
Sbjct: 67 SLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILR 126
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
+ G E + ++L + ++ + +H V K + V L+D YS G
Sbjct: 127 IFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGN 186
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ AR VF + + +VSW ++ +A N F E+L+ FN M+ +K + + +GAL +
Sbjct: 187 VDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKS 246
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
C GL+ F++ K + HGC
Sbjct: 247 CL-------GLEAFNVGKSV---------HGC 262
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 132/211 (62%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
NV++ ++D + G + A +FD M R W +++G+ + +F EA+ F+ MQ
Sbjct: 203 NVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQ 262
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
S ++P+Y+T++SVL A + L +G W+H Y K + + + + L+D+YS+ G I+
Sbjct: 263 SSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSID 322
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A QVF+ + KR ++W++II FA++G +A+ +F+LM K ++V++ G L+ACS
Sbjct: 323 KALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACS 382
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
HAGL+E+G +F M K+ + P+IEH+GC+
Sbjct: 383 HAGLVEEGRSFFSHMVKVVGLQPRIEHYGCM 413
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 96/200 (48%), Gaps = 20/200 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V W IS + ++G +EA F M+ +P+++T V++L A +
Sbjct: 234 SVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIH 293
Query: 96 -----NNV----MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
N V ++ +AL+DMY+K G +D A VF+ + R W+A++ F E
Sbjct: 294 LYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAE 353
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNVRVCNTL 203
+A+ +F +M +GV P+ + I +L+ C++ + G ++ K + + +
Sbjct: 354 DAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCM 413
Query: 204 MDVYSRFGCIEFARQVFQRM 223
+D+ R G +E A ++ + M
Sbjct: 414 VDLLGRAGHLEEAEELIRNM 433
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 84/222 (37%), Gaps = 53/222 (23%)
Query: 114 MDLATVVFDVMR--GCDFWTALLNGFVKRD---YFEEALEYFRVMQISG-VEPDYLTIIS 167
+D A VF M C W +L + + EAL F M G V+P+ T S
Sbjct: 68 IDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDN-------VR---VCNTLMDVYS--------- 208
VL CA L G +H + K F ++ VR +C + D YS
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187
Query: 209 ----------------------------RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAV 240
R G I+ A+ +F M R++VSWN +I G+A
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQ 247
Query: 241 NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
NG EA+ F MQ + V+ L A + G +E G
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG 289
>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Vitis vinifera]
Length = 633
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 151/282 (53%), Gaps = 26/282 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFPS-------- 95
+ WTS IS R+ EA F M R +G P TF T+L+ C +
Sbjct: 227 AICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVH 286
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
NV+V ++L+DMY K G + + +FD M + W+ALL G+ + F+
Sbjct: 287 AKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFK 346
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH-RYVPKQDFKDNVRVCNTL 203
++ FR M+ + D ++L CA + + G +H +Y+ K ++D V V + L
Sbjct: 347 SVIQIFRKME----KVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRD-VIVESAL 401
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ GCIE+A+ +F +M R L++WNS+I GFA NG EAL FN M K K D
Sbjct: 402 VDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDY 461
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+SF G L ACSH GL+++G +YF M K Y + IEH+ C+
Sbjct: 462 ISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCM 503
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 126/261 (48%), Gaps = 24/261 (9%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
+ + WTS IS + R G + + F +M YG P+ T ++ C++
Sbjct: 123 VKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRI 182
Query: 95 ----------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N ++++AL+DM+ + +D A +FD + D WT++++ + D+
Sbjct: 183 FHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDF 242
Query: 143 FEEALEYFRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
F+EAL +F MQ G+ PD T +VL C N+ L G +H V F NV V +
Sbjct: 243 FDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVES 302
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
+L+D+Y + G + ++++F RM + VSW++++ G+ NG ++ F M+ K
Sbjct: 303 SLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKME----KV 358
Query: 262 DEVSFTGALTACSHAGLIEDG 282
D F L C+ + G
Sbjct: 359 DLYCFGTILRTCAGLAAVRQG 379
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 94/188 (50%), Gaps = 6/188 (3%)
Query: 100 VSTALLDMYAKFGRMDLATV--VFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
V +LL +Y K G D VFD + D WT++++G+V+ +LE F M
Sbjct: 96 VGNSLLTLYFKLG-TDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLA 154
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
GVEP+ T+ +V+ C+ + L +G H V + F N + + L+D++ R ++
Sbjct: 155 YGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDD 214
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG-VFKTDEVSFTGALTACS 274
ARQ+F + + + W SII N F EAL +F MQ+ D +F LTAC
Sbjct: 215 ARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACG 274
Query: 275 HAGLIEDG 282
+ G ++ G
Sbjct: 275 NLGRLKQG 282
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 128/217 (58%), Gaps = 2/217 (0%)
Query: 91 ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALE 148
A P N+ +++ AK G + A +FD M D W+++++G++ ++EALE
Sbjct: 221 AQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALE 280
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F+ MQ P + SVL C+N+ + G W+H Y+ + K + + L+D+Y+
Sbjct: 281 IFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYA 340
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G ++ +VF+ M +R + +WN++I G A++G +ALE F+ +Q+G K + ++ G
Sbjct: 341 KCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVG 400
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTAC+HAG ++ GL+ F M++ Y V P++EH+GC+
Sbjct: 401 VLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCM 437
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 19/156 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
+ W+S + + +G EA F +M+ T P ++L+ C++ +
Sbjct: 260 ISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAY 319
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ ++ TALLDMYAK GR+D+ VF+ M+ + W A++ G E+A
Sbjct: 320 LKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDA 379
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182
LE F +Q ++P+ +T++ VL CA+ + GL
Sbjct: 380 LELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGL 415
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 39/226 (17%)
Query: 100 VSTALLDMYAK--FGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQI 155
VS ALL YA F D A VF + + W ++ G ++ + +A+ ++ M I
Sbjct: 67 VSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVI 126
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR----------------- 198
P+ T ++ C+ + + G +H +V K +V
Sbjct: 127 D-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLED 185
Query: 199 ------------VC-NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
VC NT++D Y + G +E A+ +F +M + + SWN +I G A G +G
Sbjct: 186 ARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLG 245
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+A + F+ M + DE+S++ + AG ++ L+ F M++
Sbjct: 246 DARKLFDEMS----ERDEISWSSMVDGYISAGRYKEALEIFQQMQR 287
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 128/217 (58%), Gaps = 2/217 (0%)
Query: 91 ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALE 148
A P N+ +++ AK G + A +FD M D W+++++G++ ++EALE
Sbjct: 221 AQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALE 280
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F+ MQ P + SVL C+N+ + G W+H Y+ + K + + L+D+Y+
Sbjct: 281 IFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYA 340
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G ++ +VF+ M +R + +WN++I G A++G +ALE F+ +Q+G K + ++ G
Sbjct: 341 KCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVG 400
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTAC+HAG ++ GL+ F M++ Y V P++EH+GC+
Sbjct: 401 VLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCM 437
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 19/156 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
+ W+S + + +G EA F +M+ T P ++L+ C++ +
Sbjct: 260 ISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAY 319
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ ++ TALLDMYAK GR+D+ VF+ M+ + W A++ G E+A
Sbjct: 320 LKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDA 379
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182
LE F +Q ++P+ +T++ VL CA+ + GL
Sbjct: 380 LELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGL 415
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 39/226 (17%)
Query: 100 VSTALLDMYAK--FGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQI 155
VS ALL YA F D A VF + + W ++ G ++ + +A+ ++ M I
Sbjct: 67 VSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVI 126
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR----------------- 198
P+ T ++ C+ + + G +H +V K +V
Sbjct: 127 D-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLED 185
Query: 199 ------------VC-NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
VC NT++D Y + G +E A+ +F +M + + SWN +I G A G +G
Sbjct: 186 ARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLG 245
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+A + F+ M + DE+S++ + AG ++ L+ F M++
Sbjct: 246 DARKLFDEMS----ERDEISWSSMVDGYISAGRYKEALEIFQQMQR 287
>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 147/279 (52%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ W++ I+ + ++G EA F M L G PS TFV +++ C+D +
Sbjct: 281 ITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGY 340
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+ TAL+DMYAK G + A FD ++ D WT++++G+ + E A
Sbjct: 341 SLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETA 400
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L + MQ+ + P LT+ SVL C+++ L G +H K F V + + L +
Sbjct: 401 LTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTM 460
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G +E VF+RM R +++WN++I G + NG +ALE F ++ G K D V+F
Sbjct: 461 YAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTF 520
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH GL+E G YF +M + + P++EH+ C+
Sbjct: 521 VNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACM 559
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 112/260 (43%), Gaps = 21/260 (8%)
Query: 46 VQWTSSISRHCRSGCI-LEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPSN------- 96
V W I+ + + G + +E F RMR T P+ TF + + + P
Sbjct: 77 VSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAH 136
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+V V ++L++MY K G M A VFD + R W +++G+
Sbjct: 137 ALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAF 196
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA E F +M+ D SVL+ + G +H K V N L+
Sbjct: 197 EAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALV 256
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+Y + GC++ A + F+ + ++W+++I G+A G EAL F M K E
Sbjct: 257 TMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEF 316
Query: 265 SFTGALTACSHAGLIEDGLQ 284
+F G + ACS G +E+G Q
Sbjct: 317 TFVGVINACSDIGALEEGKQ 336
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 21/235 (8%)
Query: 71 MRLYGTNPSHITFVTLLSGCA---DFPS--------------NNVMVSTALLDMYAKFGR 113
M LY P H +FV LL C D ++V ++ +L+++YAK G
Sbjct: 1 MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60
Query: 114 MDLATVVFDVMRGCDF--WTALLNGFVKRDY--FEEALEYFRVMQISGVEPDYLTIISVL 169
+ A +VF+ + D W L+NG+ ++ + +E F+ M+ P+ T V
Sbjct: 61 IVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVF 120
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
++ GL H K +V V ++L+++Y + GC+ AR+VF + +R V
Sbjct: 121 TAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTV 180
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
SW +II G+A+ EA E F LM++ D+ +T L+A + L+ G Q
Sbjct: 181 SWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQ 235
>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 611
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 142/264 (53%), Gaps = 22/264 (8%)
Query: 64 AALEFTRMRLYGTNPSHITFVTLLSGCADFPSN------------------NVMVSTALL 105
AA F M P+ TF LL CA P + + VS L+
Sbjct: 119 AAAFFPLMLRAAVAPNKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNTLI 178
Query: 106 DMYAKFGR--MDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
MY+ FG + A VF+ M W+A++ G+V+ +A+ FR MQ+SGV PD
Sbjct: 179 HMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPD 238
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
+T+I VL A++ L + W+ R+V ++ +V +CN L+D ++ G ++ A VF+
Sbjct: 239 EVTVIGVLAAAADLGALELTRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFE 298
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
M +RT+VSW S+I A+ G EA+ F M+ D+V+F G LTACSHAG++++
Sbjct: 299 GMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDE 358
Query: 282 GLQYFDIMKKIYRVSPQIEHHGCI 305
G YFD MK Y + P+IEH+GC+
Sbjct: 359 GRGYFDSMKTEYGIEPKIEHYGCM 382
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 21/221 (9%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA----------- 91
++ V W++ I + R+G +A + F M++ G P +T + +L+ A
Sbjct: 202 ESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWV 261
Query: 92 ------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
+ +V + AL+D AK G +D A VF+ M R WT++++
Sbjct: 262 GRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRG 321
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNT 202
+EA+ F M+ GV PD + I VL C++ + G + + + +
Sbjct: 322 KEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGC 381
Query: 203 LMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
++D++ R G +E + + M K + W +++ +G
Sbjct: 382 MVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHG 422
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 128/218 (58%), Gaps = 8/218 (3%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
S +V V+ L+ Y G +DLA VFD M R W ++++ V+ ++ AL+ FR
Sbjct: 164 SGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRD 223
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ---DFKDNVRVCNTLMDVYSR 209
MQ S EPD T+ SVL+ CA + +L +G W H ++ + D +V + N+L+++Y +
Sbjct: 224 MQKS-FEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCK 282
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK--GVFKTDEVSFT 267
G + A QVFQ M K L SWN++I+GFA +G EA+ F+ M K K + V+F
Sbjct: 283 CGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPNSVTFV 342
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L AC+H G++ G QYFD+M + Y + P +EH+GCI
Sbjct: 343 ALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCI 380
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 114/281 (40%), Gaps = 39/281 (13%)
Query: 8 TILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALE 67
++L P PH Q N P S N+ + + S++ C L+
Sbjct: 4 SLLLHPLSPHIQPANS-----PSASTAGNHHRRIL--------SLAETCSDMSQLKQLHA 50
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGC 127
FT Y P+ + + +L + + F ++ A VFD +
Sbjct: 51 FTLRTTYPDEPA-----------------TLFLYGKILQLSSSFSDVNYAFRVFDSIENH 93
Query: 128 D--FWTALLNGF---VKRDYFEEALEYFRVMQISGVE-PDYLTIISVLNVCANVRTLGIG 181
W L+ V R EEA +R M G PD T VL CA + L G
Sbjct: 94 SSFMWNTLIRACAHDVSRK--EEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEG 151
Query: 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN 241
+H + K F +V V N L+ Y GC++ AR+VF M +R+LVSWNS+I
Sbjct: 152 KQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRV 211
Query: 242 GFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
G AL+ F MQK F+ D + L+AC+ G + G
Sbjct: 212 GEYDSALQLFRDMQKS-FEPDGYTMQSVLSACAGLGSLSLG 251
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 126/215 (58%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
PS +++ ++D Y K G +++A +F M + WT+++ GFV+ +EAL
Sbjct: 172 LPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLL 231
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+ M ++G++PD +T+ L+ CA + L G W+H Y+ K K + + L+D+Y +
Sbjct: 232 QQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKC 291
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G ++ A VF ++ K+ + +W +II GFAV+G EAL++F MQK K +FT L
Sbjct: 292 GEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVL 351
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
TACSH GL+E+G F+ M Y + P +EH+GC+
Sbjct: 352 TACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCM 386
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 21/211 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WTS I R+G EA +M + G P IT LS CA +
Sbjct: 209 ISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTY 268
Query: 96 ---NNV----MVSTALLDMYAKFGRMDLATVVFDVM-RGCDF-WTALLNGFVKRDYFEEA 146
N + ++ AL+DMY K G M A +VF + + C + WTA++ GF EA
Sbjct: 269 IGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEA 328
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNVRVCNTLMD 205
L++F MQ +G++P T +VL C++ + G + + + K + ++D
Sbjct: 329 LDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVD 388
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
+ R G ++ A++ + M K W S++
Sbjct: 389 LLGRAGFLKEAKEFVESMPIKPNAAIWGSLL 419
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 35/214 (16%)
Query: 104 LLDMYA--KFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
LL YA +F + A +VFD + + W ++ + + EEAL + M +
Sbjct: 49 LLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIP 108
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
+ T +L C+ + L +H + K+ F V N+L+ VY+ G I+ A +
Sbjct: 109 HNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVL 168
Query: 220 FQRMHKRTLVSWNS-------------------------------IIVGFAVNGFVGEAL 248
F + R +VSWN+ +IVGF G EAL
Sbjct: 169 FDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEAL 228
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M K D+++ + +L+AC+ G +E G
Sbjct: 229 CLLQQMLVAGIKPDKITLSCSLSACAGLGALEQG 262
>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Vitis vinifera]
Length = 694
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 151/280 (53%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRL-YGTNPSHITFVTLLSGCADFP---------- 94
V W S +S G + F RMR G P+ +T ++++S CAD
Sbjct: 186 VSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHG 245
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
S V +L++MY K G +D A+ +F+ M R W +++ Y E+
Sbjct: 246 VVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEK 305
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
++ F +M+ +G+ PD T++++L C + +H Y+ + F ++ + L++
Sbjct: 306 GMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLN 365
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + + +F+ + R ++W +++ G+AV+ EA++ F+LM K + D V+
Sbjct: 366 LYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 425
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
FT L+ACSH+GL+E+G +YF+IM ++YRV P+++H+ C+
Sbjct: 426 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCM 465
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 32/208 (15%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
+ + V W S + H +G + F M+ G NP T V LL C D
Sbjct: 284 VRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAES 343
Query: 95 ----------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDY 142
+ +++++TALL++YAK GR++ + +F+ ++ D WTA+L G+
Sbjct: 344 IHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHAC 403
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANV-------RTLGIGLWMHRYVPKQDFKD 195
EA++ F +M GVE D++T +L+ C++ + I ++R P+ D
Sbjct: 404 GREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY- 462
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRM 223
+ ++D+ R G +E A ++ + M
Sbjct: 463 -----SCMVDLLGRSGRLEDAYELIKSM 485
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
R + ++ D + + L+ +Y + G E A+++F M + LVSWNS++ G + G++G
Sbjct: 144 RVIKSLNYSDGF-IGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLG 202
Query: 246 EALEYFNLMQ-KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
L F M+ + + +EV+ ++AC+ G +++G ++ K+
Sbjct: 203 ACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKL 250
>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 849
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 144/263 (54%), Gaps = 20/263 (7%)
Query: 63 EAALEFTRMRL-YGTNPSHITFVTLLSGCADFPSNNV-----------------MVSTAL 104
EAA++ R L G P+ + + L CA + + V +AL
Sbjct: 432 EAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESAL 491
Query: 105 LDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+DMY+K GR+DL+ +F M D W ++++ F + EEAL+ FR M + GV+ +
Sbjct: 492 MDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNN 551
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
+TI S+L+ CA + + G +H + K + ++ + L+D+Y + G +E A +VF+
Sbjct: 552 VTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEH 611
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M ++ VSWNSII + +G V E+++ MQ+ FK D V+F ++AC+HAG +++G
Sbjct: 612 MPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEG 671
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
L+ F M + Y + PQ+EH C+
Sbjct: 672 LRLFRCMTEEYHIEPQVEHLSCM 694
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 98/178 (55%), Gaps = 2/178 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ V +AL+ MYA G +D A VFD M R C W +++G+VK A+ FRVM+
Sbjct: 181 DMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMR 240
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
SG +P++ T+ L+VCA L G+ +H K + V V NTL+ +Y++ C+E
Sbjct: 241 ASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLE 300
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
A ++F M + LV+WN +I G NG V +AL F MQK + D V+ L A
Sbjct: 301 EAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPA 358
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 117/269 (43%), Gaps = 20/269 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSN------ 96
V W + + ++G + A F MR G +P+ T LS CA D S
Sbjct: 214 VLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTL 273
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
V V+ L+ MYAK ++ A +F +M D W +++G V+ ++A
Sbjct: 274 AVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDA 333
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F MQ SG++PD +T+ S+L + G +H Y+ + +V + + L+D+
Sbjct: 334 LRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDI 393
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + + A+ VF +V +++I G+ +N A++ F + K + V
Sbjct: 394 YFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMV 453
Query: 267 TGALTACSHAGLIEDGLQYFD-IMKKIYR 294
L AC+ + G + ++K Y
Sbjct: 454 ASTLPACASMAAMRIGQELHGYVLKNAYE 482
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 8/207 (3%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF-----WTALLNGFVKRDYFEEALEYFRVM- 153
+ T L+ MY R A VF + W L+ GF + A+ ++ M
Sbjct: 78 LQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMW 137
Query: 154 -QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
S PD T+ V+ CA + L +G +HR ++ V + L+ +Y+ G
Sbjct: 138 AHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGL 197
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ AR+VF M +R V WN ++ G+ G V A+ F +M+ + + L+
Sbjct: 198 LDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSV 257
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQI 299
C+ + G+Q + K Y + P++
Sbjct: 258 CAAEADLLSGVQLHTLAVK-YGLEPEV 283
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 144/280 (51%), Gaps = 24/280 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH--ITFVTLLSGCAD--------- 92
V WTS I+ G IL A L R RL+ P + + ++SG +
Sbjct: 43 NVVAWTSMIN-----GYILSADLVSAR-RLFDLAPERDVVLWNIMVSGYIEGGDMVEARK 96
Query: 93 ----FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
P+ +VM +L YA G ++ +F+ M R W AL+ G+ F E
Sbjct: 97 LFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEV 156
Query: 147 LEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
L F R++ S V P+ T+++VL+ CA + L +G W+H Y K NV V N LMD
Sbjct: 157 LGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMD 216
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G IE A VF+ M + L+SWN++I G A++ +AL F M+ K D ++
Sbjct: 217 MYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGIT 276
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L AC+H GL+EDG YF M Y + PQIEH+GC+
Sbjct: 277 FIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCM 316
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 142/279 (50%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WTS I+ + + C +A F M+ G P +I + +SGCA
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHAR 471
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTA--LLNGFVKRDYFEEA 146
S +V + AL+++YA+ GR+ A F+ M D T L++GF + EEA
Sbjct: 472 IYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEA 531
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F M SGV+ + T +S L+ AN+ + G +H V K V N L+ +
Sbjct: 532 LKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISL 591
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G E A+ F M +R VSWN+II + +G EAL+ F+ M+K K ++V+F
Sbjct: 592 YGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTF 651
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSH GL+E+GL YF M Y + P+ +H+ C+
Sbjct: 652 IGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACV 690
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 132/269 (49%), Gaps = 24/269 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
TV + + IS H + G E ALE F M+ G +P +T +LL+ CA
Sbjct: 209 TVTFNTLISGHAQCG-HGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLH 267
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFE 144
S++ ++ +LLD+Y K G ++ A V+F+ + W +L F + +
Sbjct: 268 SYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLA 327
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
++ E F MQ +G+ P+ T +L C R + +G +H K F+ ++ V L+
Sbjct: 328 KSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLI 387
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+YS++G +E AR+V + + ++ +VSW S+I G+ + +AL F MQK D +
Sbjct: 388 DMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNI 447
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIY 293
A++ C+ + GLQ I +IY
Sbjct: 448 GLASAISGCAGINAMRQGLQ---IHARIY 473
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 2/188 (1%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQIS 156
+V L+D+Y+K G + A VF+ + D W A+L+G+ + EEAL +R M +
Sbjct: 78 IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
GV P + SVL+ C G +H K F + V N ++ +Y R G A
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLA 197
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
+VF M R V++N++I G A G ALE F MQ D V+ + L AC+
Sbjct: 198 ERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASL 257
Query: 277 GLIEDGLQ 284
G ++ G Q
Sbjct: 258 GDLQKGTQ 265
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 119/265 (44%), Gaps = 19/265 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + +S + ++G EA + +M G P+ ++LS C
Sbjct: 109 VSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQ 168
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVKRDYFEEA 146
+ + V A++ +Y + G LA VF M D T L++G + + E A
Sbjct: 169 GYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHA 228
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F MQ SG+ PD +TI S+L CA++ L G +H Y+ K + + +L+D+
Sbjct: 229 LEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDL 288
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G +E A +F + +V WN ++V F + ++ E F MQ + ++ ++
Sbjct: 289 YVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTY 348
Query: 267 TGALTACSHAGLIEDGLQYFDIMKK 291
L C+ I+ G Q + K
Sbjct: 349 PCILRTCTCTREIDLGEQIHSLSVK 373
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 152/279 (54%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS---------------GC 90
V W + I+ + R+G E M P T ++L GC
Sbjct: 205 VSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGC 264
Query: 91 A--DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+ ++ V+++L+DMYAK R+ + VF ++ D W +++ G V+ F+E
Sbjct: 265 SIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEG 324
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L +FR M ++ ++P + S++ CA++ TL +G +H Y+ + F +N+ + ++L+D+
Sbjct: 325 LRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDM 384
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G I A+Q+F RM R +VSW ++I+G A++G +A+E F M+ K + V+F
Sbjct: 385 YAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAF 444
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTACSH GL+++ +YF+ M + + ++P +EH+ +
Sbjct: 445 MAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAV 483
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 32/173 (18%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W +++ + ++L F M SG+ PD+ SVL CA + L +G +H Y+
Sbjct: 74 WKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYII 133
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFA--------------------------------R 217
+ ++ N LM++YS+ +E + R
Sbjct: 134 RVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVR 193
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
++F+ M ++ LVSWN+II G A NG E L M K D + + L
Sbjct: 194 KIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVL 246
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 148/275 (53%), Gaps = 19/275 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V W S I ++G + A F M +++ T+L G
Sbjct: 190 VSWNSMIGGLVKAGDLGRARKLFDEM----AERDAVSWNTILDGYVKAGEMSQAFNLFEK 245
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P NV+ + ++ Y K G M++A ++FD M + WT +++GF ++ +EA +
Sbjct: 246 MPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLY 305
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M+ +G++PD T+IS+L CA L +G +H + K K +V V N L+D+Y++
Sbjct: 306 NQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKC 365
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G ++ A +F M R LVSWN ++ G A++G +A++ F+ MQ+ FK D+V+ L
Sbjct: 366 GRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAIL 425
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
AC+HAG ++ GL YF+ M++ + + P IEH+GC+
Sbjct: 426 CACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCM 460
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 8/205 (3%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVM 153
N++ V+ L+ ++ +M+LA VF+ ++ + + L+ V+ +A F M
Sbjct: 53 NDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDM 112
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC- 212
Q +G+ D T +L C L +H +V K F ++ V N+L+D YS+ G
Sbjct: 113 QKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLL 172
Query: 213 -IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
+ +A ++F M ++ LVSWNS+I G G +G A + F+ M + D VS+ L
Sbjct: 173 GVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMA----ERDAVSWNTILD 228
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVS 296
AG + F+ M + VS
Sbjct: 229 GYVKAGEMSQAFNLFEKMPERNVVS 253
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 126/208 (60%), Gaps = 2/208 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V+ +++ +AK G +D A +FD M R W ++++GFV+ F++AL+ FR MQ
Sbjct: 191 DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQ 250
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V+PD T++S+LN CA + G W+H Y+ + F+ N V L+D+Y + GCIE
Sbjct: 251 EKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIE 310
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
VF+ K+ L WNS+I+G A NGF A++ F+ +++ + D VSF G LTAC+
Sbjct: 311 EGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACA 370
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
H+G + ++F +MK+ Y + P I+H+
Sbjct: 371 HSGEVHRADEFFRLMKEKYMIEPSIKHY 398
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 117/268 (43%), Gaps = 24/268 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V W S IS R+G +A F M+ P T V+LL+ CA ++
Sbjct: 224 VSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEY 283
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N +V TAL+DMY K G ++ VF+ + W +++ G + E A
Sbjct: 284 IVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERA 343
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV-PKQDFKDNVRVCNTLMD 205
++ F ++ SG+EPD ++ I VL CA+ + R + K + +++ +++
Sbjct: 344 MDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVN 403
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
V G +E A + + M + V W+S++ G V A ++K DE
Sbjct: 404 VLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKK--LDPDET 461
Query: 265 SFTGALT-ACSHAGLIEDGLQYFDIMKK 291
L+ A + GL E+ ++ +MK+
Sbjct: 462 CGYVLLSNAYASYGLFEEAVEQRLLMKE 489
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 8/201 (3%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
S+ V S L A M+ A +VF + + W ++ GF + + E A+ F
Sbjct: 55 SDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFID 114
Query: 153 MQISG--VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M S V+P LT SV + G +H V K+ +D+ + NT++ +Y
Sbjct: 115 MLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTC 174
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
GC+ A ++F M +V+WNS+I+GFA G + +A F+ M + + VS+ +
Sbjct: 175 GCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMP----QRNGVSWNSMI 230
Query: 271 TACSHAGLIEDGLQYFDIMKK 291
+ G +D L F M++
Sbjct: 231 SGFVRNGRFKDALDMFREMQE 251
>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 151/280 (53%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRL-YGTNPSHITFVTLLSGCADFP---------- 94
V W S +S G + F RMR G P+ +T ++++S CAD
Sbjct: 129 VSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHG 188
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
S V +L++MY K G +D A+ +F+ M R W +++ Y E+
Sbjct: 189 VVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEK 248
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
++ F +M+ +G+ PD T++++L C + +H Y+ + F ++ + L++
Sbjct: 249 GMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLN 308
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + + +F+ + R ++W +++ G+AV+ EA++ F+LM K + D V+
Sbjct: 309 LYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 368
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
FT L+ACSH+GL+E+G +YF+IM ++YRV P+++H+ C+
Sbjct: 369 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCM 408
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 32/208 (15%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
+ + V W S + H +G + F M+ G NP T V LL C D
Sbjct: 227 VRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAES 286
Query: 95 ----------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDY 142
+ +++++TALL++YAK GR++ + +F+ ++ D WTA+L G+
Sbjct: 287 IHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHAC 346
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANV-------RTLGIGLWMHRYVPKQDFKD 195
EA++ F +M GVE D++T +L+ C++ + I ++R P+ D
Sbjct: 347 GREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY- 405
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRM 223
+ ++D+ R G +E A ++ + M
Sbjct: 406 -----SCMVDLLGRSGRLEDAYELIKSM 428
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
R + ++ D + + L+ +Y + G E A+++F M + LVSWNS++ G + G++G
Sbjct: 87 RVIKSLNYSDGF-IGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLG 145
Query: 246 EALEYFNLMQ-KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
L F M+ + + +EV+ ++AC+ G +++G ++ K+
Sbjct: 146 ACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKL 193
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 129/213 (60%), Gaps = 4/213 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCD--FWTALLNGFVKRDYFEEALEYFRV 152
++++ T LLD YAK G ++ A +FD M R + W +++ +V+ F A+ F+
Sbjct: 64 DMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQ 123
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
MQ V+P +T++S+L+ CA++ L +G W+H Y+ + K +V + N L+D+Y + G
Sbjct: 124 MQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGA 183
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+E A VF + ++ + WNSIIVG +NG EA+ F +M+K K D V+F G L+
Sbjct: 184 LEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSG 243
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
CSH+GL+ G +YF M +Y + P +EH+GC+
Sbjct: 244 CSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCM 276
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 99/216 (45%), Gaps = 30/216 (13%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
+V W + IS + + G A F +M+ P+ +T V+LLS CA +
Sbjct: 98 SVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHG 157
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+V++ AL+DMY K G ++ A VF + + W +++ G EE
Sbjct: 158 YIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEE 217
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ----DFKDNVRVCN 201
A+ F VM+ G++PD +T + +L+ C++ L G RY + + V
Sbjct: 218 AIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAG---QRYFSEMLGVYGLEPGVEHYG 274
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
++D+ R G ++ A ++ + M + NS+++G
Sbjct: 275 CMVDLLGRAGYLKEALELIRAMPMKP----NSMVLG 306
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 18/151 (11%)
Query: 150 FRVMQISGVEPDYLTIIS----------------VLNVCANVRTLGIGLWMHRYVPKQDF 193
RV SGV PD+L S +L CA +G H + K F
Sbjct: 2 IRVSLESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGF 61
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYF 251
+ ++ + L+D Y++ G +E AR +F M +R V+WN++I + G G A+ F
Sbjct: 62 EYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMF 121
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
MQ K EV+ L+AC+H G ++ G
Sbjct: 122 QQMQSENVKPTEVTMVSLLSACAHLGALDMG 152
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 157/319 (49%), Gaps = 52/319 (16%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYG--TNPSHITFVTLLSGCA----- 91
+S + V W + I + RSG EA F R+ G P +T + +SGCA
Sbjct: 181 ESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDL 240
Query: 92 -------DFPSNN-----VMVSTALLDMYAKFGRMDLATVV------------------- 120
+F N V + A++DMY K G ++LA V
Sbjct: 241 ELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGH 300
Query: 121 ------------FDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
FD M D W AL+ G+V+ +EA+ F MQ S V+P+ +T++
Sbjct: 301 ARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMV 360
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
++L+ C+ + L +G+W+H Y+ + +V + +L+D+Y++ G I+ A VF + +
Sbjct: 361 NLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQ 420
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
++W S+I G A +G EA+EYF M + DE++F G L+AC HAGL+E G Q+F
Sbjct: 421 NALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFF 480
Query: 287 DIMKKIYRVSPQIEHHGCI 305
+M Y + +++H+ C+
Sbjct: 481 SLMHAKYHLERKMKHYSCM 499
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 127/296 (42%), Gaps = 66/296 (22%)
Query: 52 ISRHCRSGCILEAALEFTRMRLYG--TNPSHITFVTLLSGCADFP--------------- 94
+ RHC L R L+ P H+TF L+ CA
Sbjct: 100 VDRHC---------LPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKL 150
Query: 95 --SNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYF 150
S +V V A + ++ G M A +FD +R W L+ G+V+ EALE F
Sbjct: 151 GFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELF 210
Query: 151 RVMQISG--VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
+ G V PD +T+I ++ CA + L +G +H +V + + VR+ N +MD+Y
Sbjct: 211 WRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYV 270
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFA--------------------------VNG 242
+ G +E A VF+R+ RT VSW ++IVG A + G
Sbjct: 271 KCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAG 330
Query: 243 FV-----GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL---QYFDIMK 290
+V EA+ F+ MQK +E++ L+ACS G +E G+ Y D K
Sbjct: 331 YVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHK 386
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 27/219 (12%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W + ++ + ++ EA F M+ +P+ IT V LLS C+ +
Sbjct: 324 WNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYID 383
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALE 148
+V + T+L+DMYAK G + A VF+ ++ WT+++ G + +EA+E
Sbjct: 384 RHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIE 443
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL----WMHRYVPKQDFKDNVRVCNTLM 204
YF+ M G++PD +T I VL+ C + + G MH K + ++ + ++
Sbjct: 444 YFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMH---AKYHLERKMKHYSCMI 500
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
D+ R G ++ A Q+ M V W ++ ++G
Sbjct: 501 DLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHG 539
>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 1 [Cucumis sativus]
gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 2 [Cucumis sativus]
Length = 517
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 147/281 (52%), Gaps = 24/281 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF------------ 93
V WTS IS + G EA +F M + P+ T VT LS C+
Sbjct: 130 VSWTSIISGLSKLGFEKEALSKFLSMNV---RPNSTTLVTALSACSSLRCLKLGKAIHGL 186
Query: 94 -----PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
NV++ ALLD Y + + A +F+ M D WT ++ G+ + EEA
Sbjct: 187 RMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEA 246
Query: 147 LEYFRVM-QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV-PKQDFKDNVRVCNTLM 204
+ F+ M + P+ T+++VL+ C+++ L +G W+H Y+ + D + V N L+
Sbjct: 247 VRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNALI 306
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
++Y + G +E A +F+ + + +VSW++II G A+NG +A F+LM D++
Sbjct: 307 NMYVKCGNMEMAILIFKAIEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGVSPDDI 366
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L+ACSH GLI G+ F+ MK +Y +SPQ+ H+ C+
Sbjct: 367 TFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYACM 407
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 3/142 (2%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
LL V + E L + M ++ T L C + GL +H ++ K
Sbjct: 34 LLGSLVNSIFPENGLFLYNQMLRYPSSHNHFTFTYALKACCFLHQTQKGLEIHAHLIKSG 93
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
++ + N+L+ Y G + A +F + +VSW SII G + GF EAL F
Sbjct: 94 HLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFL 153
Query: 253 LMQKGVFKTDEVSFTGALTACS 274
M + + + AL+ACS
Sbjct: 154 SMN---VRPNSTTLVTALSACS 172
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 156/279 (55%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + IS + ++G +A + M P T ++L A++ +
Sbjct: 202 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGY 261
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+V + ++L+DMYAK R+D + VF ++ D W +++ G V+ F+E
Sbjct: 262 AIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEG 321
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L++F+ M I+ ++P++++ S++ CA++ TL +G +H Y+ + F NV + + L+D+
Sbjct: 322 LKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDM 381
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G I AR +F +M +VSW ++I+G+A++G +A+ F M+ K + V+F
Sbjct: 382 YAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAF 441
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTACSHAGL+++ +YF+ M + YR+ P +EH+ +
Sbjct: 442 MAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAV 480
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 125/296 (42%), Gaps = 48/296 (16%)
Query: 37 NSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA----- 91
NS + TT+ W S I + G L + F +M G P H F ++L C
Sbjct: 63 NSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDL 122
Query: 92 DFPSN------------NVMVSTALLDMYAKFGRMDLATV-------------------- 119
F + ++ AL++MY+KF ++
Sbjct: 123 RFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKE 182
Query: 120 ---------VFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
VF++M D W +++G + E+AL R M + + PD T+ SV
Sbjct: 183 SYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSV 242
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L + A L G +H Y + + +V + ++L+D+Y++ ++ + +VF + +
Sbjct: 243 LPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDG 302
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+SWNSII G NG E L++F M K + VSF+ + AC+H + G Q
Sbjct: 303 ISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQ 358
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 34/210 (16%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD---FWTALLNGFVKRDYFEEALEY 149
PS +++ + +L +Y+ + + ++F+ + W +++ + F +L +
Sbjct: 36 LPSPSLL--STILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSF 93
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F M SG PD+ SVL C ++ L G +H + + ++ CN LM++YS+
Sbjct: 94 FIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSK 153
Query: 210 FGCIEFA-----------------------------RQVFQRMHKRTLVSWNSIIVGFAV 240
F +E R+VF+ M KR +VSWN++I G A
Sbjct: 154 FWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQ 213
Query: 241 NGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
NG +AL M + D + + L
Sbjct: 214 NGMHEDALMMVREMGNADLRPDSFTLSSVL 243
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 141/260 (54%), Gaps = 24/260 (9%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDM 107
WT+ IS H R+G + A F M P N A++D
Sbjct: 79 WTTMISVHARTGDMSSARQLFDEM----------------------PVRNTASWNAMIDG 116
Query: 108 YAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
Y++ ++ A ++F M D WT ++ + + F EAL F MQ +G++PD +T+
Sbjct: 117 YSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTM 176
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
++++ CA++ L +G +H Y + F +V + + L+D+Y++ G ++ + VF ++ K
Sbjct: 177 ATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRK 236
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
+ L WNSII G AV+G+ EAL F+ MQ+ K + V+F L AC+HAGL+E+G +
Sbjct: 237 KNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKR 296
Query: 286 FDIMKKIYRVSPQIEHHGCI 305
F M + + + P+IEH+GC+
Sbjct: 297 FLSMSRDFSIPPEIEHYGCM 316
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
V P T S++ C+ V LG G +H ++ K F +V V L+D Y G I AR
Sbjct: 6 VSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEAR 65
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+VF M +R + +W ++I A G + A + F+ M
Sbjct: 66 RVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEM 102
>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 143/281 (50%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN------- 96
T+ W I + S EA F MR G P+++TF LL CA +
Sbjct: 95 ATMPWNFIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFH 154
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+V V L+ Y RM A VFD M R W A++ V+ F+
Sbjct: 155 AIAIKCGLDLDVYVRNTLIYFYGSCKRMSGARKVFDEMTERTLVSWNAVITACVENFCFD 214
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA++YF M G EPD T++ +L+ CA + L +G W+H V + NV++ +
Sbjct: 215 EAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFV 274
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G + AR VF + ++++ +W+++I+G A +GF EA+E F M + V
Sbjct: 275 DMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANEAIELFTNMMSSPIVPNHV 334
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L ACSHAGL++ YF++M+++Y + P + H+G +
Sbjct: 335 TFIGVLCACSHAGLVDKSYHYFNLMERVYGIKPMMIHYGSM 375
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 153/294 (52%), Gaps = 35/294 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
V WT+ I+ + + GC EA F +M G+ P+ +T +++LS CA
Sbjct: 374 VTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAY 433
Query: 92 -----------DF--PSNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALL 134
DF ++MV AL+DMY+K A +FD + R WT ++
Sbjct: 434 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 493
Query: 135 NGFVKRDYFEEALEYFRVM--QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
G + +AL+ F M + GV P+ TI +L CA++ + IG +H YV +
Sbjct: 494 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 553
Query: 193 FKDNVR--VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 250
++ V N L+D+YS+ G ++ AR VF M +++ +SW S++ G+ ++G EAL+
Sbjct: 554 RYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDI 613
Query: 251 FNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
F+ M+K F D+++F L ACSH G+++ GL YFD M Y ++P+ EH+ C
Sbjct: 614 FDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAC 667
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 126/279 (45%), Gaps = 28/279 (10%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--- 95
+ T V W I H + G + A RM GT P H T +L C + PS
Sbjct: 121 RVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRC 180
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCD---FWTALLNG 136
+NV + AL+ MY++ G ++ A+++FD RG D W ++++
Sbjct: 181 GSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSA 240
Query: 137 FVKRDYFEEALEYFRVMQI------SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
VK AL+ F M + + D ++I+++L C +++ + +H +
Sbjct: 241 HVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIR 300
Query: 191 QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 250
+V V N L+D Y++ G +E A +VF M + +VSWN+++ G++ +G A E
Sbjct: 301 NGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFEL 360
Query: 251 FNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
F M+K D V++T + S G + L F M
Sbjct: 361 FKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 399
>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
Length = 1260
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 148/285 (51%), Gaps = 26/285 (9%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T V W S + G +A + M P TF+ L + C + +
Sbjct: 826 TVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIH 885
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
++ + MY+K A ++FD+M R C WT +++G+ ++ +
Sbjct: 886 SHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMD 945
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF----KDNVRVC 200
EAL F M SG +PD +T++S+++ C +L G W+ + D +DNV +C
Sbjct: 946 EALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWID---ARADIYGCKRDNVMIC 1002
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N L+D+YS+ G I AR +F ++T+V+W ++I G+A+NG EAL+ F+ M +K
Sbjct: 1003 NALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYK 1062
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ ++F L AC+H+G +E G +YF IMK++Y +SP ++H+ C+
Sbjct: 1063 PNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCM 1107
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 21/264 (7%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---- 95
S + + W I +E+ L F M+ G P++ TF + CA
Sbjct: 618 SGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCC 677
Query: 96 -------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKR 140
++V V TA +DM+ K +D A VF+ M R W A+L+GF +
Sbjct: 678 EMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQS 737
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
+ ++A FR M+++ + PD +T+++++ + ++L + MH + V V
Sbjct: 738 GHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVA 797
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
NT + Y + G ++ A+ VF+ + + RT+VSWNS+ ++V G +A + LM +
Sbjct: 798 NTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREE 857
Query: 259 FKTDEVSFTGALTACSHAGLIEDG 282
FK D +F +C + + G
Sbjct: 858 FKPDLSTFINLAASCQNPETLTQG 881
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
T V WT+ I+ + +G LEA F++M P+HITF+ +L CA S +
Sbjct: 1029 TVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAH--------SGS 1080
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
L + F M V+++ G D ++ +++ ++ EEALE R M +PD
Sbjct: 1081 LEKGWEYFHIM---KQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNM---SAKPDAG 1134
Query: 164 TIISVLNVCANVRTLGIG 181
++LN C R + I
Sbjct: 1135 IWGALLNACKIHRNVKIA 1152
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 157/318 (49%), Gaps = 51/318 (16%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF----- 93
+S+ V WT+ I + C EA F M L P+ +T + ++S C+D
Sbjct: 317 ESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEM 376
Query: 94 --------PSNNVMVS----TALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
N+ S ALLDMY K + A +FD M D WT+++NG+ K
Sbjct: 377 GKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAK 436
Query: 140 -------RDYFE------------------------EALEYFRVMQISGVEPDYLTIISV 168
R +F+ E+L+ F M GV P T++SV
Sbjct: 437 CGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSV 496
Query: 169 LNVCANVRTLGIGLWMHRY-VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
L+ C + L +G W+H+Y V + +V + N ++D+Y++ G I+ A +VF M +R
Sbjct: 497 LSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERN 556
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
L+SWN++I G+A NG +A+ F+ M+ F+ + ++F LTACSH GLI +G +YFD
Sbjct: 557 LISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFD 616
Query: 288 IMKKIYRVSPQIEHHGCI 305
M++ Y + P+ H+ C+
Sbjct: 617 NMERKYGIKPERGHYACM 634
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 112/206 (54%), Gaps = 8/206 (3%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
++V L+ YA+ G + A VFD D WT +++G+ D EEA+E F +M +
Sbjct: 292 LLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLL 351
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
S VEP+ +T+I+V++ C+++ L +G +H V +++ + ++ + N L+D+Y + C+
Sbjct: 352 SHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVD 411
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
AR++F RM + + SW S++ G+A G + A +F+ + + V ++ + S
Sbjct: 412 ARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTP----RKNAVCWSAMIAGYSQ 467
Query: 276 AGLIEDGLQYFDIMKKIYRVSPQIEH 301
++ L+ F M + R IEH
Sbjct: 468 NNKPKESLKLFHEMME--RGVVPIEH 491
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 10/194 (5%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGF--VKRDYFEEALE 148
FP + V+ AL A G + A +F+ + + W ++ G+ ++ F A
Sbjct: 190 FPVSRVIAFCAL----AHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIF--AFS 243
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
+F M VE D + + L C T+ G ++ V K F + V N L+ Y+
Sbjct: 244 FFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYA 303
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
G ++ ARQVF + +V+W ++I G+A + EA+E F LM + +EV+
Sbjct: 304 ERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIA 363
Query: 269 ALTACSHAGLIEDG 282
++ACS G +E G
Sbjct: 364 VVSACSDMGNLEMG 377
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 103/239 (43%), Gaps = 33/239 (13%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN------- 97
V W++ I+ + ++ E+ F M G P T V++LS C N
Sbjct: 455 AVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQ 514
Query: 98 -----------VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
V + A++DMYAK G +D AT VF M R W ++ G+ +
Sbjct: 515 YFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAK 574
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR------ 198
+A+ F M+ G EP+ +T +S+L C++ + G Y + K ++
Sbjct: 575 QAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEG---REYFDNMERKYGIKPERGHY 631
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTL-VSWNSIIVGFAVNGFVGEA-LEYFNLMQ 255
C ++D+ R G +E A ++ M + +W +++ ++G V A L NL++
Sbjct: 632 AC--MVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLR 688
>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
Length = 751
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 146/285 (51%), Gaps = 49/285 (17%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
V WTS I+ + C EA + M L+ P+ IT V +L CA
Sbjct: 172 VAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDR 231
Query: 92 -------DFPSN---NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRD 141
F SN NV+++TA++DMYAK C + N + + +
Sbjct: 232 TGQMGLDPFQSNSNFNVILATAIVDMYAK----------------CAY-----NQYGQAN 270
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
EAL+ F M+I+G +PD T + V+ CA++ L G +H YV K + D+ +
Sbjct: 271 ---EALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGT 327
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG-VFK 260
L+D+Y++ G E A+QVF + K+ + +W S+I+G A++G EAL +F MQ+
Sbjct: 328 ALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALI 387
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
DE+++ G L+ACSH G +EDG +F MK ++ + P +H+GC+
Sbjct: 388 PDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCM 432
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 107/261 (40%), Gaps = 52/261 (19%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN---------- 97
W S I + S EA + MR G P H TF +L C+ N
Sbjct: 73 WNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIV 132
Query: 98 -------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
V +TALL MYA G M+ A VFD + + WT+L+ G + D EA+
Sbjct: 133 KTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVR 192
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD-------NVRVCN 201
++ M++ V P+ +T+++VL CA R L G W+H + NV +
Sbjct: 193 VYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILAT 252
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
++D+Y++ ++ G EAL+ F+ M+ F
Sbjct: 253 AIVDMYAKCAYNQY--------------------------GQANEALDLFSDMRIAGFDP 286
Query: 262 DEVSFTGALTACSHAGLIEDG 282
D+ +F + AC+H G + G
Sbjct: 287 DKATFLCVIGACAHLGALVSG 307
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 2/171 (1%)
Query: 108 YAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
Y+ G ++ A VF+ + W +++ G+ + +EAL +R M+ G PD+ T
Sbjct: 49 YSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTF 108
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
VL C+ V +G +H + K F+ +V L+ +Y+ G +E A +VF + K
Sbjct: 109 PFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPK 168
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
+V+W S+I G N EA+ + M+ +E++ L AC+ +
Sbjct: 169 WNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARS 219
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 153/288 (53%), Gaps = 32/288 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V WT+ I + + G I EA L F RM + +++ +L G +
Sbjct: 57 VSWTAMIRGYVQEGLIEEAELLFWRM----PERNVVSWTVMLGGLIEDGRVDEARQLFDM 112
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNG------------FV 138
P +V+ ST ++D GR+ A +FD M R WT++++G
Sbjct: 113 MPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIY 172
Query: 139 KRDYFE-EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197
+R FE EAL F +MQ GV P + ++ISVL+VC ++ +L G +H + + F ++
Sbjct: 173 ERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDI 232
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
V + L+ +Y + G + A++VF R + +V WNSII G+A +GF +ALE F+ M
Sbjct: 233 YVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSS 292
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
DE++F G L+ACS+ G +++GL+ F+ MK Y+V P+ EH+ C+
Sbjct: 293 SIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACM 340
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 95/255 (37%), Gaps = 76/255 (29%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
T+ W +S + ++G I EA F +M P NV+ TA+
Sbjct: 25 TISWNGLVSGYVQNGMISEARKVFDKM----------------------PERNVVSWTAM 62
Query: 105 LDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+ Y + G ++ A ++F M R WT +L G ++ +EA + F +M +
Sbjct: 63 IRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPV------- 115
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
KD V N + + S IE AR++F
Sbjct: 116 -------------------------------KDVVASTNMIDGLCSEGRLIE-AREIFDE 143
Query: 223 MHKRTLVSWNSIIVG-------------FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
M +R +V+W S+I G + GF EAL F+LMQ+ + S
Sbjct: 144 MPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISV 203
Query: 270 LTACSHAGLIEDGLQ 284
L+ C ++ G Q
Sbjct: 204 LSVCGSLASLDHGRQ 218
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA-LEYFNLMQKGVF 259
N L+ Y + G I AR+VF +M +R +VSW ++I G+ G + EA L ++ + ++ V
Sbjct: 29 NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNV- 87
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
VS+T L G +++ Q FD+M
Sbjct: 88 ----VSWTVMLGGLIEDGRVDEARQLFDMM 113
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
AR++F +M + +SWN ++ G+ NG + EA + F+ M + + VS+T +
Sbjct: 13 ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMP----ERNVVSWTAMIRGYVQ 68
Query: 276 AGLIEDGLQYF 286
GLIE+ F
Sbjct: 69 EGLIEEAELLF 79
>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 647
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 152/280 (54%), Gaps = 22/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WTS I+ + ++ +A L F RM G P+ T +L+ C S
Sbjct: 141 VSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHAC 200
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD---FWTALLNGFVKRDYFEE 145
+NV V ++L+DMYA+ G + A +VFD + GC W AL+ G+ ++ EE
Sbjct: 201 CWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKL-GCKNEVSWNALIAGYARKGEGEE 259
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL F MQ G P T ++L+ C+++ L G W+H ++ K K V NTL+
Sbjct: 260 ALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLH 319
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G I A +VF ++ K +VS NS+++G+A +G EA + F+ M + + ++++
Sbjct: 320 MYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDIT 379
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F LTACSHA L+++G YF +M+K Y + P++ H+ I
Sbjct: 380 FLSVLTACSHARLLDEGKHYFGLMRK-YNIEPKVSHYATI 418
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 104/189 (55%), Gaps = 2/189 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+++++ +LL MYA+ G ++ A +FD M D WT+++ G+ + D +AL F M
Sbjct: 107 HDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRM 166
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
G EP+ T+ S++ C + + G +H K NV V ++L+D+Y+R G +
Sbjct: 167 LSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYL 226
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A VF ++ + VSWN++I G+A G EAL F MQ+ ++ E +++ L++C
Sbjct: 227 GEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSC 286
Query: 274 SHAGLIEDG 282
S G +E G
Sbjct: 287 SSMGCLEQG 295
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 20/210 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF------------ 93
V W + I+ + R G EA F RM+ G P+ T+ LLS C+
Sbjct: 242 VSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAH 301
Query: 94 ---PSNNVM--VSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVKRDYFEEA 146
S ++ V LL MYAK G + A VFD + D + ++L G+ + +EA
Sbjct: 302 LMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEA 361
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ F M G+EP+ +T +SVL C++ R L G + K + + V T++D+
Sbjct: 362 AQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDL 421
Query: 207 YSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
R G ++ A+ + M + T+ W +++
Sbjct: 422 LGRAGLLDQAKSFIEEMPIEPTVAIWGALL 451
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%)
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
L ++ +EPD ++L C + L G +H +V +FK ++ + N+L+
Sbjct: 58 GLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLF 117
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y+R G +E AR++F M R +VSW S+I G+A N +AL F M + +E +
Sbjct: 118 MYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFT 177
Query: 266 FTGALTACSHAGLIEDGLQ 284
+ + C + G Q
Sbjct: 178 LSSLVKCCGYMASYNCGRQ 196
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 153/294 (52%), Gaps = 35/294 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
V WT+ I+ + + GC EA F +M G+ P+ +T +++LS CA
Sbjct: 367 VTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAY 426
Query: 92 -----------DF--PSNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALL 134
DF ++MV AL+DMY+K A +FD + R WT ++
Sbjct: 427 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 486
Query: 135 NGFVKRDYFEEALEYFRVM--QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
G + +AL+ F M + GV P+ TI +L CA++ + IG +H YV +
Sbjct: 487 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 546
Query: 193 FKDNVR--VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 250
++ V N L+D+YS+ G ++ AR VF M +++ +SW S++ G+ ++G EAL+
Sbjct: 547 RYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDI 606
Query: 251 FNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
F+ M+K F D+++F L ACSH G+++ GL YFD M Y ++P+ EH+ C
Sbjct: 607 FDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAC 660
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 126/279 (45%), Gaps = 28/279 (10%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--- 95
+ T V W I H + G + A RM GT P H T +L C + PS
Sbjct: 114 RVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRC 173
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCD---FWTALLNG 136
+NV + AL+ MY++ G ++ A+++FD RG D W ++++
Sbjct: 174 GSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSA 233
Query: 137 FVKRDYFEEALEYFRVMQI------SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
VK AL+ F M + + D ++I+++L C +++ + +H +
Sbjct: 234 HVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIR 293
Query: 191 QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 250
+V V N L+D Y++ G +E A +VF M + +VSWN+++ G++ +G A E
Sbjct: 294 NGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFEL 353
Query: 251 FNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
F M+K D V++T + S G + L F M
Sbjct: 354 FKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 392
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 143/262 (54%), Gaps = 24/262 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V W S I+ + RSG + EA F +M + + +++ T++SG
Sbjct: 360 VCWNSMIAGYSRSGRMDEALNLFRQMPIKNS----VSWNTMISG---------------- 399
Query: 106 DMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
YA+ G+MD AT +F MR + W +L+ GF++ + + +AL+ +M G +PD
Sbjct: 400 --YAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQS 457
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T L+ CAN+ L +G +H Y+ K + +++ V N L+ +Y++ G ++ A QVF+ +
Sbjct: 458 TFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDI 517
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
L+SWNS+I G+A+NG+ +A + F M DEV+F G L+ACSHAGL GL
Sbjct: 518 ECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGL 577
Query: 284 QYFDIMKKIYRVSPQIEHHGCI 305
F M + + + P EH+ C+
Sbjct: 578 DIFKCMIEDFAIEPLAEHYSCL 599
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 116/258 (44%), Gaps = 36/258 (13%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMV 100
T V W ++ + +SG + A F ++ NP+ +++VT+L G A
Sbjct: 200 TERNVVSWNLMVAGYVKSGDLSSAWQLFEKI----PNPNAVSWVTMLCGLA--------- 246
Query: 101 STALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
K+G+M A +FD M + W A++ +V+ +EA++ F+ M
Sbjct: 247 ---------KYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMP---- 293
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
D ++ +++N V L ++ +P +D + LM + G I+ A Q
Sbjct: 294 HKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKD----ITAQTALMSGLIQNGRIDEADQ 349
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
+F R+ +V WNS+I G++ +G + EAL F M + VS+ ++ + AG
Sbjct: 350 MFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMP----IKNSVSWNTMISGYAQAGQ 405
Query: 279 IEDGLQYFDIMKKIYRVS 296
++ + F M++ VS
Sbjct: 406 MDRATEIFQAMREKNIVS 423
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 20/182 (10%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
N++ +++ + AK R+ A +FD M R W ++ G++ + EEA E F VM
Sbjct: 47 NLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMP 106
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
E D + ++ L + VP K + N ++ Y++ G
Sbjct: 107 ----ERDNFSWALMITCYTRKGKLEKARELLELVPD---KLDTACWNAMIAGYAKKGQFN 159
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-----------NLMQKGVFKTDE 263
A++VF++M + LVS+NS++ G+ NG + AL++F NLM G K+ +
Sbjct: 160 DAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGD 219
Query: 264 VS 265
+S
Sbjct: 220 LS 221
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
N+ N+++ V ++ I ARQ+F +M R LVSWN++I G+ N V EA E F++M
Sbjct: 47 NLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMP 106
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
+ D S+ +T + G +E + +++
Sbjct: 107 ----ERDNFSWALMITCYTRKGKLEKARELLELV 136
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 15/152 (9%)
Query: 108 YAKFGRMDLATVVFDVM-----RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
Y + G+++ A + +++ C W A++ G+ K+ F +A + F M D
Sbjct: 120 YTRKGKLEKARELLELVPDKLDTAC--WNAMIAGYAKKGQFNDAKKVFEQMPAK----DL 173
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
++ S+L + + L + ++ NV N ++ Y + G + A Q+F++
Sbjct: 174 VSYNSMLAGYTQNGKMHLALQFFESMTER----NVVSWNLMVAGYVKSGDLSSAWQLFEK 229
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+ VSW +++ G A G + EA E F+ M
Sbjct: 230 IPNPNAVSWVTMLCGLAKYGKMAEARELFDRM 261
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 159/313 (50%), Gaps = 54/313 (17%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTR-MRLYGTNPSHITFVTLLSGCADFP---------- 94
V W++ I R+ + ALE R M PS + V++++ AD
Sbjct: 191 VSWSTMIRSLSRNK-EFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHA 249
Query: 95 -----SNN----VMVSTALLDMYAKFGRMDLATVVFD------------VMRGCD----- 128
SNN V +TALLDMYAK G + LA +F+ ++ GC
Sbjct: 250 YVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRL 309
Query: 129 ----------------FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC 172
WTA+L+ + + + ++A F M+ SGV P +TI+S+L++C
Sbjct: 310 EEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLC 369
Query: 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
A L +G W+H Y+ K+ + + + L+D+Y++ G I A ++F R + WN
Sbjct: 370 AVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWN 429
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
+II GFA++G+ EAL+ F M++ K ++++F G L ACSHAGL+ +G + F+ M
Sbjct: 430 AIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHT 489
Query: 293 YRVSPQIEHHGCI 305
+ + PQIEH+GC+
Sbjct: 490 FGLVPQIEHYGCM 502
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+V V AL+ MY + ++ A +VFD M D W+ ++ + F+ ALE R M
Sbjct: 158 DVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMN 217
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT--LMDVYSRFGC 212
V P + ++S++N+ A+ + +G MH YV + +++ V T L+D+Y++ G
Sbjct: 218 FMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGH 277
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+ ARQ+F + ++T+VSW ++I G + + EA F+ Q D + +T L+A
Sbjct: 278 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQ----NRDVMIWTAMLSA 333
Query: 273 CSHAGLIEDGLQYFDIMK 290
+ A I+ FD M+
Sbjct: 334 YAQANCIDQAFNLFDQMR 351
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 23/212 (10%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---------------- 91
WT+ +S + ++ CI +A F +MR G P+ +T V+LLS CA
Sbjct: 327 WTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYID 386
Query: 92 -DFPSNNVMVSTALLDMYAKFGRMDLATVVF--DVMRGCDFWTALLNGFVKRDYFEEALE 148
+ + +++TAL+DMYAK G ++ A +F + R W A++ GF Y EEAL+
Sbjct: 387 KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALD 446
Query: 149 YFRVMQISGVEPDYLTIISVLNVC--ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
F M+ GV+P+ +T I +L+ C A + T G L+ + V + ++D+
Sbjct: 447 IFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLF-EKMVHTFGLVPQIEHYGCMVDL 505
Query: 207 YSRFGCIEFARQVFQRMH-KRTLVSWNSIIVG 237
R G ++ A ++ + M K + W +++
Sbjct: 506 LGRAGLLDEAHEMIKSMPIKPNTIVWGALVAA 537
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W ++ + KR+ AL + ++ E D SVL C V +G +H +V
Sbjct: 92 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
K+ +V V N LM +Y C+E+AR VF +M +R +VSW+++I + N ALE
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211
Query: 250 YFNLMQKGVFKTDEVSF 266
M + EV+
Sbjct: 212 LIREMNFMQVRPSEVAM 228
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 153/280 (54%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
+ W+ ISR+ +S EA F +MR P+ TF ++L CA +
Sbjct: 208 VIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHC 267
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
NV VS AL+D+YAK GR+D + +F + R W ++ G+V+ ++
Sbjct: 268 HVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDK 327
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL ++ M V+ +T SVL CA++ + +G +H K + +V V N L+D
Sbjct: 328 ALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALID 387
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G I+ AR VF + +R +SWN++I G++++G VGEAL+ F +MQ+ ++++
Sbjct: 388 MYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLT 447
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L+ACS+AGL++ G YF M + Y + P +EH+ C+
Sbjct: 448 FVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCM 487
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 122/259 (47%), Gaps = 19/259 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS-----GCADFP----- 94
TV + + I + +S + E F+R+ G + F T+L CA+
Sbjct: 6 TVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHA 65
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+N V TAL+D YA G ++ A FD + D WT ++ + + D F++
Sbjct: 66 CIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQD 125
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+L+ F M++ G P++ T VL C + +G +H V K ++ ++ V L+D
Sbjct: 126 SLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLD 185
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++FG +VF+ M K ++ W+ +I +A + EA+E F M++ ++ +
Sbjct: 186 LYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFT 245
Query: 266 FTGALTACSHAGLIEDGLQ 284
F L +C+ ++ G Q
Sbjct: 246 FASVLQSCASIENLQLGKQ 264
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 155/290 (53%), Gaps = 28/290 (9%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
I V W + IS + +G +A F M P T T++S CA S
Sbjct: 169 IKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQ 228
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+N+ + AL+D+Y+K G ++ A + + + D W L+ G+ +
Sbjct: 229 VHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNL 288
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN- 201
++EAL F+ M SG P+ +T++S+L CA++ + IG W+H Y+ K+ V V N
Sbjct: 289 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKK--LKGVVVTNA 346
Query: 202 -----TLMDVYSRFGCIEFARQVFQR-MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
+L+D+Y++ G I+ A QV R+L +WN++I GFA++G A + F+ M+
Sbjct: 347 SSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMR 406
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
K + D+++F G L+ACSH+G+++ G F M++ Y ++P++EH+GC+
Sbjct: 407 KNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCM 456
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 135/272 (49%), Gaps = 25/272 (9%)
Query: 13 PFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMR 72
PFL +++ K+ QI +D V TS IS + ++G + +A F R
Sbjct: 79 PFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVH-TSLISMYAQNGRLEDAQKVFDR-- 135
Query: 73 LYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--W 130
SH +V+ TAL+ YA G ++ A +FD + D W
Sbjct: 136 -----SSH---------------RDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSW 175
Query: 131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
A+++G+ + +++ALE F+ M + V+PD T+ +V++ CA ++ +G +H ++
Sbjct: 176 NAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWIND 235
Query: 191 QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 250
F N+++ N L+D+YS+ G +E A ++ + + + ++SWN++I G+ EAL
Sbjct: 236 HGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLL 295
Query: 251 FNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
F M + ++V+ L AC+H G I+ G
Sbjct: 296 FQEMLRSGETPNDVTMLSILPACAHLGAIDIG 327
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 33/207 (15%)
Query: 111 FGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F + A VF+ + + W + G AL+ + VM G+ P++ T +
Sbjct: 22 FDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFL 81
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L CA +T G +H +V K F ++ V +L+ +Y++ G +E A++VF R R +
Sbjct: 82 LKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDV 141
Query: 229 VSWNSIIVGFAVNGFV-------------------------------GEALEYFNLMQKG 257
VS+ ++I G+A G++ +ALE F M K
Sbjct: 142 VSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKT 201
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQ 284
K DE + ++AC+ +G IE G Q
Sbjct: 202 NVKPDESTMATVVSACAQSGSIELGRQ 228
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 139/256 (54%), Gaps = 8/256 (3%)
Query: 55 HC---RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKF 111
HC ++G + + + + + +Y TN I + G +F N + A++ Y
Sbjct: 114 HCQIIKAGIVPDTHIHSSLIHMY-TNSGSIDDAERVLG--EFSEENTLAKNAMISGYLTE 170
Query: 112 GRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
GR+D A +FD M D W+AL+ G+ K EAL F+ M +S + P+ ++S+L
Sbjct: 171 GRVDKARKMFDDMAAKDAASWSALITGYTKNGMHTEALALFQDMMVSHILPNEAALVSLL 230
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
+ C + TL G W+H Y+ K + ++ L+D+Y++ G IE +FQ+M +R +V
Sbjct: 231 SACGQLGTLHQGRWIHAYIDKTRVLMSTKLTTALIDMYAKSGSIECGYGLFQKMARRDVV 290
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
+W +I FA++G + + F+ M + ++V F L+ACSHAG +E+G QYF M
Sbjct: 291 TWGVMISAFAIHGHASKCFQLFDEMLADGIRPNKVIFVAILSACSHAGCVEEGRQYFSQM 350
Query: 290 KKIYRVSPQIEHHGCI 305
+ + + P IEH+GC+
Sbjct: 351 EHGFGIKPSIEHYGCM 366
>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Brachypodium distachyon]
Length = 734
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 144/280 (51%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
++ W++ I+ + ++G A F++M G P+ T V +L+ C+D +
Sbjct: 286 SITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHG 345
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
V V +AL+DMYAK G + A F+ D WTA++ G V+ FE+
Sbjct: 346 LMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQ 405
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL + M GV P+ LTI S+L CA + L G +H + K F V + L
Sbjct: 406 ALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALST 465
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ G +E VF+RM R +++WNSII GF+ NG +A+ F M+ D V+
Sbjct: 466 MYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVT 525
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L ACSH GL++ G YF M K Y ++P+++H+ C+
Sbjct: 526 FINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACM 565
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 108/203 (53%), Gaps = 7/203 (3%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
S+NV VSTALL+MY K G + A +VFD M R W A++ G+ R +EA E FR
Sbjct: 150 SSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFR- 208
Query: 153 MQISGVEP---DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
Q+ G P + +VL+ + L +G+ +H V K V V N+L+ +Y++
Sbjct: 209 -QMLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAK 267
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
GC++ A VF+ +R ++W+++I G++ NG A+ F+ M F E + G
Sbjct: 268 AGCMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGV 327
Query: 270 LTACSHAGLIEDGLQYFDIMKKI 292
L ACS G + +G Q +M K+
Sbjct: 328 LNACSDVGTLMEGKQAHGLMVKL 350
>gi|125557892|gb|EAZ03428.1| hypothetical protein OsI_25566 [Oryza sativa Indica Group]
Length = 519
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 148/286 (51%), Gaps = 26/286 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS-----GCADFPSN---- 96
V W +S + G + E F MR G TF LLS C D +
Sbjct: 73 VLWNVMVSCYSSHGLVRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSCYDHANLLLVL 132
Query: 97 ---------------NVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVK 139
+V+V+TALLDMYAK G++ A+ VFD V+R W A++ + K
Sbjct: 133 GSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGK 192
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
D +EA + F M G PD LT+ S+L+ CA++ +H Y ++ +D ++V
Sbjct: 193 HDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQV 252
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
N L+ VY + G ++ A++ F +H LV+W+S++ FA G A++ F+ M +
Sbjct: 253 GNALIMVYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQGI 312
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D ++F G L+ACSHAGLIEDG +YF +M + Y++ P +H C+
Sbjct: 313 RADGIAFLGVLSACSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACL 358
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 99/211 (46%), Gaps = 20/211 (9%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++ V+TAL D YAK G +D A VFD +R W +++ + E + F M
Sbjct: 39 SDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGLVRECWDVFGSM 98
Query: 154 QISGVEPDYLTIISVLNVCANVRT-------LGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ SG D T ++L+V A+ L +G +H V + +V V L+D+
Sbjct: 99 RRSGFPGDGFTFSALLSVRASSSCYDHANLLLVLGSSVHGIVIRLGLHLDVVVATALLDM 158
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G + A +VF M R VSWN+IIV + + EA + F M + F DE++
Sbjct: 159 YAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELTL 218
Query: 267 TGALTACS-----------HAGLIEDGLQYF 286
L++C+ HA + GLQ F
Sbjct: 219 ASLLSSCADMAAANEATQLHAYTVRRGLQDF 249
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%)
Query: 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
A VR +H K + RV L D Y++ G ++ AR+VF R V WN
Sbjct: 17 AGVRGRPACAAVHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWN 76
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ ++ +G V E + F M++ F D +F+ L+
Sbjct: 77 VMVSCYSSHGLVRECWDVFGSMRRSGFPGDGFTFSALLS 115
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 145/265 (54%), Gaps = 27/265 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
TV W + + + ++G + EAA E F RM P NV+ +
Sbjct: 225 TVSWNTILDGYTKAGEV-EAAFELFQRM----------------------PERNVVSWST 261
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
++ Y K G +++A V+FD M + WT +++ ++ +EA + F M+ + VE D
Sbjct: 262 MVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELD 321
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
++S+L CA +L +G +HRYV K++ + VCN L+D++ + GC+ A VF
Sbjct: 322 VAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFD 381
Query: 222 -RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
++ VSWNSII GFA++G +ALE F M++ F D V+ L+AC+H G ++
Sbjct: 382 TETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVD 441
Query: 281 DGLQYFDIMKKIYRVSPQIEHHGCI 305
+G ++F M++ Y + PQIEH+GC+
Sbjct: 442 EGRRHFSNMERDYGIMPQIEHYGCM 466
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 10/198 (5%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+ V AL+D Y+K G A VFD M D W + V+ + F M
Sbjct: 161 EDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM 220
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
E D ++ ++L+ + + + +P++ NV +T++ Y + G +
Sbjct: 221 P----EKDTVSWNTILDGYTKAGEVEAAFELFQRMPER----NVVSWSTMVSGYCKKGDL 272
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E AR +F +M + LV+W ++ A G V EA + F M++ + D + L AC
Sbjct: 273 EMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAAC 332
Query: 274 SHAGLIEDGLQYFDIMKK 291
+ +G + G + ++K
Sbjct: 333 AESGSLSLGKRIHRYVRK 350
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H +V K ++ V N L+D YS+ G AR+VF M +R +VSWN+ + G
Sbjct: 150 VHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGE 209
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
+ + F+ M + D VS+ L + AG +E + F M + VS
Sbjct: 210 LAGVRKLFDEMP----EKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVS 258
>gi|449469438|ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 528
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 122/212 (57%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+V+V T ++D Y K G ++ A V+FD M R W+A++ + + F E L FR M
Sbjct: 175 KDVVVWTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQM 234
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q + P+ I SVL CA++ + GLWMH Y + N + L+D+YS+ G I
Sbjct: 235 QKKNIVPNDSVIASVLTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYI 294
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A +VF+ + + +WN++I GFA+ G V ++LE F+ M + E +F L AC
Sbjct: 295 ESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATFVSILAAC 354
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+HA ++E GL++FD M +YRV PQ EH+ C+
Sbjct: 355 THAKMVERGLEFFDQMYPVYRVQPQFEHYACV 386
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 20/198 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
+ W++ ++ + R E F +M+ P+ ++L+ CA +
Sbjct: 208 VISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIASVLTACAHLGAITQGLWMHS 267
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
+N +++TAL+DMY+K G ++ A VF+ + D W A+++GF +
Sbjct: 268 YAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVVK 327
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLM 204
+LE F M SG + T +S+L C + + + GL + + P + ++
Sbjct: 328 SLELFDKMIASGTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQFEHYACVV 387
Query: 205 DVYSRFGCIEFARQVFQR 222
D+ +R G +E A + +
Sbjct: 388 DLMARAGMVEDAEKFVEE 405
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 145/265 (54%), Gaps = 27/265 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
TV W + + + ++G + EAA E F RM P NV+ +
Sbjct: 532 TVSWNTILDGYTKAGEV-EAAFELFQRM----------------------PERNVVSWST 568
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
++ Y K G +++A V+FD M + WT +++ ++ +EA + F M+ + VE D
Sbjct: 569 MVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELD 628
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
++S+L CA +L +G +HRYV K++ + VCN L+D++ + GC+ A VF
Sbjct: 629 VAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFD 688
Query: 222 -RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
++ VSWNSII GFA++G +ALE F M++ F D V+ L+AC+H G ++
Sbjct: 689 TETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVD 748
Query: 281 DGLQYFDIMKKIYRVSPQIEHHGCI 305
+G ++F M++ Y + PQIEH+GC+
Sbjct: 749 EGRRHFSNMERDYGIMPQIEHYGCM 773
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 10/198 (5%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+ V AL+D Y+K G A VFD M D W + V+ + F M
Sbjct: 468 EDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM 527
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
E D ++ ++L+ + + + +P++ NV +T++ Y + G +
Sbjct: 528 P----EKDTVSWNTILDGYTKAGEVEAAFELFQRMPER----NVVSWSTMVSGYCKKGDL 579
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E AR +F +M + LV+W ++ A G V EA + F M++ + D + L AC
Sbjct: 580 EMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAAC 639
Query: 274 SHAGLIEDGLQYFDIMKK 291
+ +G + G + ++K
Sbjct: 640 AESGSLSLGKRIHRYVRK 657
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H +V K ++ V N L+D YS+ G AR+VF M +R +VSWN+ + G
Sbjct: 457 VHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGE 516
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
+ + F+ M + D VS+ L + AG +E + F M + VS
Sbjct: 517 LAGVRKLFDEMP----EKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVS 565
>gi|77553484|gb|ABA96280.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125578286|gb|EAZ19432.1| hypothetical protein OsJ_34992 [Oryza sativa Japonica Group]
Length = 518
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 128/215 (59%), Gaps = 5/215 (2%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P N+ A + + G MD A +F M R W +L++G+ K + +AL F
Sbjct: 204 MPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIF 263
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+ MQ +G++P LT++ VL CA + L +G +HR + + + V N L+D+Y++
Sbjct: 264 QEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKC 323
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G ++ A++VF RM R + WN++IVGF+V+G EALE F+ M+ + + V+F G L
Sbjct: 324 GMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSMK---IEPNPVTFLGVL 380
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
TACSH GL+ +G +YF+ M + YR+ P ++H+GC+
Sbjct: 381 TACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCM 415
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 130/209 (62%), Gaps = 4/209 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRG---CDFWTALLNGFVKRDYFEEALEYFRVMQIS 156
V T LL++YAK + LA VFD M G W+A++ G+ + EAL FR MQ +
Sbjct: 165 VQTGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAA 224
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
V PD +T++SV++ CA L +G W+H ++ ++ ++ + L+D+Y++ G IE A
Sbjct: 225 DVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERA 284
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
+ VF M +R +W+++IVG A++G V AL+ F+ M + + + V+F G L+AC+H+
Sbjct: 285 KGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHS 344
Query: 277 GLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
GL+ +G +Y+ M+++ + P +E++GC+
Sbjct: 345 GLVNEGRRYWSTMQEL-GIKPSMENYGCM 372
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 20/210 (9%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W++ I + R G + EA F M+ NP +T V+++S CA +
Sbjct: 198 WSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFID 257
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
++ +STAL+DMYAK G ++ A VFD M R W+A++ G E AL+
Sbjct: 258 RKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALK 317
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M V P+ +T I VL+ CA+ + G + + K ++ ++D++
Sbjct: 318 LFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCMVDLFC 377
Query: 209 RFGCIEFARQVFQRMH-KRTLVSWNSIIVG 237
R ++ A M V W +++V
Sbjct: 378 RSSLLDEAYSFVTGMAIPPNSVIWRTLLVA 407
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 151/311 (48%), Gaps = 50/311 (16%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------ 92
V W I +C++G +A F MR P + T+LS C
Sbjct: 187 AVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHE 246
Query: 93 ------------------------------------FPSNNVMVSTALLDMYAKFGRMDL 116
S +++VSTA+L YAK G +
Sbjct: 247 FVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKD 306
Query: 117 ATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A +FD M D W+A+++G+ + D +EAL+ F M PD +T++SV++ C++
Sbjct: 307 ARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSH 366
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
V L W+H YV + F + V N L+D+Y++ G + AR+VF+ M ++ ++SW+S+
Sbjct: 367 VGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSM 426
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I FA++G A++ F M++ + + V+F G L AC HAGL+E+G + F M +
Sbjct: 427 INAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHG 486
Query: 295 VSPQIEHHGCI 305
+SP EH+GC+
Sbjct: 487 ISPTREHYGCM 497
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 105/217 (48%), Gaps = 33/217 (15%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
++ + T L+ MYA R+ A ++FD M D W +++G+ + ++++AL F M
Sbjct: 154 DDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDM 213
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ S ++PD + + +VL+ C + L G +H +V + + + L+++Y+ G +
Sbjct: 214 RSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAM 273
Query: 214 EFARQ-------------------------------VFQRMHKRTLVSWNSIIVGFAVNG 242
+ AR+ +F +M +R LV W+++I G+A +
Sbjct: 274 DLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESD 333
Query: 243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
EAL+ F+ M + D+++ ++ACSH G +
Sbjct: 334 QPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGAL 370
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Query: 129 FWTALLNGFVKRDYFEEAL-EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
F LL + + E+ + Y + I+ D + S+L + V GL +H
Sbjct: 87 FSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGL 146
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
K F D+ + L+ +Y+ I AR +F +M V+WN II G+ NG +A
Sbjct: 147 ASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDA 206
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
L F M+ K D V L+AC HAG + G + +K
Sbjct: 207 LRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVK 249
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 140/267 (52%), Gaps = 24/267 (8%)
Query: 59 GCILEA----ALEFTR-MRLYGTNPSHITFVTLL---SGCADFP--------------SN 96
GC E AL F R M G P T T+L + CAD +
Sbjct: 144 GCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDS 203
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V V ++L+DMYA R D + VFD + R W +LL G + EEAL FR M
Sbjct: 204 DVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRML 263
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+GV P +T S++ VC N+ +L G +H YV F+DNV + ++L+D+Y + G I
Sbjct: 264 QAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEIS 323
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +F +M +VSW ++I+G+A++G EAL F M+ G K + ++F LTACS
Sbjct: 324 IAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACS 383
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEH 301
HAGL++ G +YF M Y + P +EH
Sbjct: 384 HAGLVDKGWKYFKSMSNHYGIVPTLEH 410
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 21/176 (11%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL--TIISVLNVCANVRTLGIGLWMHRY 187
W + +F +A+ F M+ S + ++ + L CA + +G +H
Sbjct: 16 WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGC-------------------IEFARQVFQRMHKRTL 228
+ + N L+++Y + C E R+VF M +R +
Sbjct: 76 AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
VSWN++++G A G EAL + M + F+ D + + L + ++ GL+
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLE 191
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 11/136 (8%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV 98
K + V WT+ I + G EA + F RM L P+HITF+ +L+ C+
Sbjct: 331 KMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSH------ 384
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
L+D K+ + + + ++ + + AL + + +EA + MQI
Sbjct: 385 ---AGLVDKGWKYFKS--MSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPT 439
Query: 159 EPDYLTIISVLNVCAN 174
+ T++ V N
Sbjct: 440 ASVWSTLLRACRVHKN 455
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 146/276 (52%), Gaps = 20/276 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V W S+++ R G + A F M T +++ TLL G
Sbjct: 186 VSWNSAMAAMVRQGEVEGARRMFDEMLEKDT----VSWNTLLDGYTKAGDVEEAFKLFQC 241
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P NV+ + ++ Y K G M++A V+FD M + WT +++ + EEA + F
Sbjct: 242 MPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLF 301
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M+ + VE D ++S+L CA +L +G +HRYV + + VCN L+D++ +
Sbjct: 302 TQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKC 361
Query: 211 GCIEFARQVFQ-RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
GCI A VF + ++ VSWN+II GFA++G +AL++F M+ F D V+
Sbjct: 362 GCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINV 421
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+AC+H G +E+G +YF M++ Y V PQIEH+GC+
Sbjct: 422 LSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCM 457
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 94/201 (46%), Gaps = 17/201 (8%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+ V AL+D Y+K G A+ VF+ M R W + + V++ E A F M
Sbjct: 152 EDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEM 211
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+E D ++ ++L+ + + + +P++ NV +T++ Y + G +
Sbjct: 212 ----LEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMPER----NVVSWSTVVSGYCKKGDM 263
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E AR +F +M + LV+W ++ A NG V EA + F M++ + D + L AC
Sbjct: 264 EMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAAC 323
Query: 274 SHAGLIEDGLQYFDIMKKIYR 294
+ +G + G K+I+R
Sbjct: 324 AESGSLALG-------KRIHR 337
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H +V K ++ V N L+D YS+ G A +VF+ M +R +VSWNS + G
Sbjct: 141 VHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGE 200
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
V A F+ M + D VS+ L + AG +E+ + F M +
Sbjct: 201 VEGARRMFDEM----LEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMPE 244
>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 140/270 (51%), Gaps = 24/270 (8%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN 97
S+ ++ +V W S I+ + G EA F M C D S N
Sbjct: 350 SQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMV-----------------CKDMVSWN 392
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQI 155
M++ YA+ G+MD A +F+ M R W +L+ G+V+ + EAL F +M+
Sbjct: 393 TMIAA-----YAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQ 447
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
G +PD TI+ L AN+ L +G+ +H K F +++ V N ++ +Y++ G +
Sbjct: 448 QGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPE 507
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
A VF + + +VSWNS+I G+A+NG EA+E F +M DEV+FTG L+AC+H
Sbjct: 508 AENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNH 567
Query: 276 AGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G ++ GL F M + Y + PQ EH+ C+
Sbjct: 568 GGFVDQGLNLFKSMTETYSIKPQSEHYACV 597
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 119/262 (45%), Gaps = 25/262 (9%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF-------- 93
+ V W S +S + ++G ++ L+F S V G D
Sbjct: 168 VKNVVSWNSILSGYTKNG-KMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFK 226
Query: 94 --PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
P+ NV+ +L +A +GRM A +F+ M + W A++ +V+ + ++A +
Sbjct: 227 KIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKL 286
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F M E D ++ +++N V L + +P + N+ +++ Y +
Sbjct: 287 FMEMP----EKDSVSWTAMINGYVRVGKLLQAREILNLMPYK----NIAAQTAMINGYLQ 338
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G ++ A ++F ++ R V WNS+I G+A G EAL F Q+ V K D VS+
Sbjct: 339 SGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLF---QEMVCK-DMVSWNTM 394
Query: 270 LTACSHAGLIEDGLQYFDIMKK 291
+ A + AG ++ L+ F+ M++
Sbjct: 395 IAAYAQAGQMDKALEMFNEMQE 416
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
N+ N+++ Y++ G I AR++F M +R LVSWNS+I G+ N V +A F+ M
Sbjct: 45 NIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRM- 103
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
FK D S+T +T + G +E + F+++
Sbjct: 104 ---FKRDIYSWTLMITCYTRIGELEKARELFNLL 134
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 35/207 (16%)
Query: 52 ISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKF 111
IS+ RSG I EA F +M N++ +++ YAK
Sbjct: 22 ISQLGRSGRIEEAVAVFLQM----------------------TERNIVTYNSMISAYAKN 59
Query: 112 GRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
GR+ A +FD+M R W +++ G++ + E+A F M + D + ++
Sbjct: 60 GRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRM----FKRDIYSWTLMI 115
Query: 170 NVCANVRTLGIGLWMHRYVP-KQDFKDNVRVC-NTLMDVYSRFGCIEFARQVFQRMHKRT 227
+ L + +P KQD VC N L+ Y++ A+++F M +
Sbjct: 116 TCYTRIGELEKARELFNLLPDKQD-----TVCRNALIAGYAKKRLFREAKKLFDEMLVKN 170
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLM 254
+VSWNSI+ G+ NG + L++F M
Sbjct: 171 VVSWNSILSGYTKNGKMQLGLQFFEAM 197
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
F N+R+ R G IE A VF +M +R +V++NS+I +A NG + A E F+
Sbjct: 16 FTQNLRISQ-----LGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFD 70
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
LM + + VS+ + H L+ED + FD M K
Sbjct: 71 LMP----QRNLVSWNSMIAGYLHNELVEDAARLFDRMFK 105
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 41/256 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V W S I+ + + + +AA F RM I TL+ C
Sbjct: 78 VSWNSMIAGYLHNELVEDAARLFDRMF-----KRDIYSWTLMITC--------------- 117
Query: 106 DMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
Y + G ++ A +F+++ C AL+ G+ K+ F EA + F M + V
Sbjct: 118 --YTRIGELEKARELFNLLPDKQDTVCR--NALIAGYAKKRLFREAKKLFDEMLVKNV-- 171
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
++ S+L+ + +GL + ++ NV N ++D Y G ++ A F
Sbjct: 172 --VSWNSILSGYTKNGKMQLGLQFFEAMGER----NVVSWNLMVDGYVGVGDLDSAWMFF 225
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
+++ +VSW +++ GFA G + EA FN M + VS+ + A I+
Sbjct: 226 KKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMP----TKNLVSWNAMIGAYVRENQID 281
Query: 281 DGLQYFDIMKKIYRVS 296
D + F M + VS
Sbjct: 282 DAYKLFMEMPEKDSVS 297
>gi|115486992|ref|NP_001065983.1| Os12g0114400 [Oryza sativa Japonica Group]
gi|113648490|dbj|BAF29002.1| Os12g0114400, partial [Oryza sativa Japonica Group]
Length = 504
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 128/215 (59%), Gaps = 5/215 (2%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P N+ A + + G MD A +F M R W +L++G+ K + +AL F
Sbjct: 190 MPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIF 249
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+ MQ +G++P LT++ VL CA + L +G +HR + + + V N L+D+Y++
Sbjct: 250 QEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKC 309
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G ++ A++VF RM R + WN++IVGF+V+G EALE F+ M+ + + V+F G L
Sbjct: 310 GMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSMK---IEPNPVTFLGVL 366
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
TACSH GL+ +G +YF+ M + YR+ P ++H+GC+
Sbjct: 367 TACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCM 401
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 131/211 (62%), Gaps = 7/211 (3%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQ 154
NVMVS AK G ++ A +F+ M+ + W+A+++G++K Y++EALE F VMQ
Sbjct: 231 NVMVSGM-----AKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQ 285
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ P + SVL CAN+ L G W+H YV + + L+D+Y++ G ++
Sbjct: 286 REEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLD 345
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A VF++M K+ + +WN++I G ++G +A+E F MQK F+ + ++ G L+AC+
Sbjct: 346 MAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACA 405
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H+G++++GL+ F+ M+++Y + P +EH+GC+
Sbjct: 406 HSGMVDEGLRIFNSMEEVYGIEPGMEHYGCV 436
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 40/193 (20%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------F 93
+ W++ I + + G EA F M+ P ++L+ CA+ +
Sbjct: 259 ISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAY 318
Query: 94 PSNN-----VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+NN ++ TAL+DMYAK GR+D+A VF+ M + W A++ G E+A
Sbjct: 319 VNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDA 378
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+E F MQ P+ +T++ VL+ CA+ + GL R+ N++ +V
Sbjct: 379 IELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGL---------------RIFNSMEEV 423
Query: 207 YS------RFGCI 213
Y +GC+
Sbjct: 424 YGIEPGMEHYGCV 436
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 58/234 (24%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTALLDMYAK 110
+ +M + P+ T+ TL C S +V + +A + MY
Sbjct: 118 YYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGS 177
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
FG ++ A + D + A+++G++K E A E F M+ V
Sbjct: 178 FGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNV---------- 227
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
G W N ++ ++ G IE AR++F M ++
Sbjct: 228 ------------GSW-----------------NVMVSGMAKCGMIEEARELFNEMKEKNE 258
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+SW+++I G+ G+ EALE FN+MQ+ + + + L AC++ G ++ G
Sbjct: 259 ISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQG 312
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 39/227 (17%)
Query: 100 VSTALLDMYAK--FGRMDLATVVFDVMRGCDFW--TALLNGFVKRDYFEEALEYFRVMQI 155
VS L+ YA F ++ A VF+ + + + ++ G ++ + +A+ + M I
Sbjct: 64 VSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMI 123
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV---------------- 199
+ P+ T ++ C G+ +H +V KQ +V +
Sbjct: 124 AHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEG 183
Query: 200 --------------C-NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
C N ++D Y + G +E A+++F M + + SWN ++ G A G +
Sbjct: 184 ARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMI 243
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
EA E FN M+ + +E+S++ + G ++ L+ F++M++
Sbjct: 244 EEARELFNEMK----EKNEISWSAMIDGYIKGGYYKEALEVFNVMQR 286
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 134/217 (61%), Gaps = 5/217 (2%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P +V+ TA+L YA G +D A +FD + DF W A+++G+ + EAL F
Sbjct: 448 LPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLF 507
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP-KQDFKDNVRVCNTLMDVYSR 209
R M SGVEPD +T++ VL+ A + T+ G W+H YV + + +VRV L+D+Y +
Sbjct: 508 RRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCK 567
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTG 268
G + A VF + + +V WN++I G+A++G +ALE F ++G++ TD ++F G
Sbjct: 568 CGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTD-ITFIG 626
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACSH+G++E+G ++F M++ Y + P+IEH+GC+
Sbjct: 627 LLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCM 663
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 85/222 (38%), Gaps = 37/222 (16%)
Query: 108 YAKFGRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
YA GR+DL+ + R F+T+ ++ R + AL M G+ P T+
Sbjct: 333 YAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTL 392
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR---------------- 209
+ L C R L G +H Y K + V L+ +Y+R
Sbjct: 393 SASLPAC---RGLSPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLP 449
Query: 210 ----------------FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
G ++ AR +F + + V WN++I G+ +G EAL F
Sbjct: 450 DPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRR 509
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV 295
M + DEV+ L+A + G +E G +K RV
Sbjct: 510 MLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRV 551
>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
Length = 679
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 156/279 (55%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + IS + ++G +A + M P T ++L A++ +
Sbjct: 162 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGY 221
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+V + ++L+DMYAK R+D + VF ++ D W +++ G V+ F+E
Sbjct: 222 AIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEG 281
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L++F+ M I+ ++P++++ S++ CA++ TL +G +H Y+ + F NV + + L+D+
Sbjct: 282 LKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDM 341
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G I AR +F +M +VSW ++I+G+A++G +A+ F M+ K + V+F
Sbjct: 342 YAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAF 401
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTACSHAGL+++ +YF+ M + YR+ P +EH+ +
Sbjct: 402 MAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAV 440
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
R+VF+ M KR +VSWN++I G A NG +AL M + D + + L
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVL 203
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 152/274 (55%), Gaps = 13/274 (4%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGT---NPSHITFVTLLSGCA------DFP 94
+ V WT+ I + RSG + A F +M + N +V L C+ + P
Sbjct: 327 SQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMP 386
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+V+ T ++ Y+ G +D A +FD M + W A+++G+ + EAL+ F
Sbjct: 387 ERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHE 446
Query: 153 MQ-ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
MQ + +EPD +TI+SVL A++ L +G W+HR+V ++ V L+D+Y++ G
Sbjct: 447 MQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCG 506
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
I +R VF M ++ SWN++I FA+NG EAL F M F +E++ G L+
Sbjct: 507 EIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLS 566
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
AC+H+GL+E+G ++F M++ + ++P+IEH+GC+
Sbjct: 567 ACNHSGLVEEGKRWFKAMEE-FGLTPKIEHYGCM 599
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 13/205 (6%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ +TAL+DMYAKFG+MD A +FD M R WTAL+ G+V+ + A + F M
Sbjct: 296 DLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM- 354
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+E D ++++ + + + +P++ +V ++ YS G ++
Sbjct: 355 ---IEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPER----SVVSWTIMIYGYSSNGNLD 407
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEVSFTGALTAC 273
AR +F M ++ L SWN++I G+ N EAL+ F+ MQ + DEV+ L A
Sbjct: 408 SARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAI 467
Query: 274 SHAGLIEDG--LQYFDIMKKIYRVS 296
+ G ++ G + F KK+ R +
Sbjct: 468 ADLGALDLGGWVHRFVRRKKLDRAT 492
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 4/164 (2%)
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
R Y E Y + + + PD T + CA + G +H +V F ++
Sbjct: 240 RQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYA 299
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
L+D+Y++FG ++ AR++F M R+ VSW ++I G+ +G + A + F+ M
Sbjct: 300 ATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM----I 355
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303
+ D +F + A G + + FD M + VS I +G
Sbjct: 356 EKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYG 399
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 149/281 (53%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T W + + + ++ +A + +M G +P T +LL C+ S
Sbjct: 274 TVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIH 333
Query: 96 -----NNVMV----STALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
N + V +LL +Y G+ A V+FD M R W ++ G+ + +
Sbjct: 334 GFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPD 393
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA+ FR M G++P + I+ V C+ + L +G +H + K +++ V ++++
Sbjct: 394 EAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSII 453
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ GCI ++++F R+ ++ + SWN II G+ ++G EALE F M + K D+
Sbjct: 454 DMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDF 513
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+FTG L ACSHAGL+EDGL+YF+ M ++ + P++EH+ C+
Sbjct: 514 TFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCV 554
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF-RV 152
N+ +++T ++ MY+ G + +VFD +R + W A+++ + + + FE+A+ F +
Sbjct: 139 NDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSEL 198
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
+ ++ +PD T+ V+ CA + LG+G +H K D +V V N L+ +Y + G
Sbjct: 199 ISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGL 258
Query: 213 IEFA-RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
+E A ++VF M +T+ SWN+++ G+A N +AL+ + M D + L
Sbjct: 259 VEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLL 318
Query: 272 ACS 274
ACS
Sbjct: 319 ACS 321
>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
Length = 741
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 20/281 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
++ W++ I+ + ++G AA F +M G +P+ TFV +L+ +D +
Sbjct: 291 SITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHG 350
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD---FWTALLNGFVKRDYFE 144
V V +AL+DMYAK G A F + D WTA++ G V+ E
Sbjct: 351 LMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHE 410
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL + M GV P YLT+ SVL CA + L G +H + K F V L
Sbjct: 411 EALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALS 470
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+YS+ G +E + VF+RM R ++SWNSII GF+ +G +AL+ F M+ D +
Sbjct: 471 TMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHI 530
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F L ACSH GL++ G YF M K Y + P+++H+ CI
Sbjct: 531 TFINVLCACSHMGLVDRGWFYFRAMSKDYGLIPKLDHYACI 571
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 103/201 (51%), Gaps = 3/201 (1%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
SNNV VSTALL+MY K G + A VFD M R W A+++G+ EEA E FR+
Sbjct: 155 SNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRL 214
Query: 153 M-QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M Q +E + +VL+ + L IG+ +H V K V V N+L+ +Y++
Sbjct: 215 MLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAE 274
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
C++ A VF +R ++W+++I G+A NG A F M F E +F G L
Sbjct: 275 CMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILN 334
Query: 272 ACSHAGLIEDGLQYFDIMKKI 292
A S G + G Q +M K+
Sbjct: 335 ASSDMGALVVGKQAHGLMVKL 355
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 39/240 (16%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF----PSNN 97
+D V WT+ I+ H ++G EA + ++RM G PS++T ++L CA P
Sbjct: 390 VDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQ 449
Query: 98 V-------------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+ V TAL MY+K G ++ + VVF M D W ++++GF +
Sbjct: 450 LHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGR 509
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF----KDNVR 198
+AL+ F M++ G+ PD++T I+VL C+++ + G W + +D+ K +
Sbjct: 510 GRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLVDRG-WFYFRAMSKDYGLIPKLDHY 568
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRM---HKRTLVSWNSIIVG-------FAVNGFVGEAL 248
C ++D+ SR G ++ A+ + + H L W I++G F V + GE L
Sbjct: 569 AC--IVDILSRAGQLKEAKDFIESITIDHGTCL--WR-IVLGACRSLRDFDVGAYAGEQL 623
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 97/215 (45%), Gaps = 24/215 (11%)
Query: 95 SNNVMVSTALLDMYAKFGR--MDLATVVF-DV---MRGCDFWTALLNGFVKRDYFEEALE 148
+++ VS +L+ Y R + A VF D+ +R W +LLN + AL
Sbjct: 46 ASHTPVSNSLITFYCSPPRPLLGAAFAVFADIPAGLRDVASWNSLLNPLSRHQPLA-ALS 104
Query: 149 YFRVMQIS--GVEPDYLTIISVLNVCANVRTLGIGLWMHRY---VPKQDFKDNVRVCNTL 203
+FR M S V P + +V A V + G H + +P +NV V L
Sbjct: 105 HFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGAVAHAFACKLPSSSGSNNVFVSTAL 164
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTD 262
+++Y + G I AR+VF +M R VSW +++ G+A EA E F LM Q+ + +
Sbjct: 165 LNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKN 224
Query: 263 EVSFTGALTACS-----------HAGLIEDGLQYF 286
E T L+A S H +++DGL F
Sbjct: 225 EFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGF 259
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 157/317 (49%), Gaps = 58/317 (18%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I+ + ++G EA F RM G P +T +++S CA +
Sbjct: 214 VTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHAR 273
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM----------------------- 124
+++++ AL+DMYAK +++ A VFD M
Sbjct: 274 VVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKA 333
Query: 125 ----------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
R W AL+ G+ + EEAL FR+++ + P + T ++L+ CAN
Sbjct: 334 ARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACAN 393
Query: 175 VRTLGIGLWMHRYVPKQDFK------DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
+ L +G H +V KQ F+ ++ V N+L+D+Y + G IE +VF++M +R
Sbjct: 394 LADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDC 453
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
VSWN+IIVG+A NG+ EAL+ F M K D V+ G L ACSHAGL+E+G YF
Sbjct: 454 VSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFS 513
Query: 289 MKKIYRVSPQIEHHGCI 305
M++ + + P +H+ C+
Sbjct: 514 MEE-HGLIPLKDHYTCM 529
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 102/194 (52%), Gaps = 2/194 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYF 150
P N +L+ + K G +D A +F M D W ++++GF + D FEE+LEYF
Sbjct: 76 MPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYF 135
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M + + S L+ CA + L +G +H V K + +V + + L+D+YS+
Sbjct: 136 VKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKC 195
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + A +VF M +R LV+WNS+I + NG EALE F M + DEV+ +
Sbjct: 196 GSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVV 255
Query: 271 TACSHAGLIEDGLQ 284
+AC+ +++GLQ
Sbjct: 256 SACASLCALKEGLQ 269
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 126/279 (45%), Gaps = 51/279 (18%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------- 94
W S +S + E+ F +M + +F + LS CA
Sbjct: 115 WNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVS 174
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
S +V + +AL+DMY+K G + A VF M R W +L+ + + EALE
Sbjct: 175 KSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALE 234
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH-RYVPKQDFKDNVRVCNTLMDVY 207
F M SG+EPD +T+ SV++ CA++ L GL +H R V F+D++ + N L+D+Y
Sbjct: 235 VFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMY 294
Query: 208 SRFGCIEFARQVFQRMH-------------------------------KRTLVSWNSIIV 236
++ + AR+VF RM +R +VSWN++I
Sbjct: 295 AKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIA 354
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
G+ NG EAL F L+++ +F L+AC++
Sbjct: 355 GYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACAN 393
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 38/237 (16%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF---- 93
SK T V W + I+ + ++G EA F ++ P+H TF LLS CA+
Sbjct: 339 SKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLL 398
Query: 94 -------------------PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTA 132
+++ V +L+DMY K G ++ + VF+ M R C W A
Sbjct: 399 LGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNA 458
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG------LWMHR 186
++ G+ + Y EAL+ FR M + G +PD++T+I VL C++ + G + H
Sbjct: 459 IIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHG 518
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
+P +D ++D+ R GC+ A+ + + M V W S++ V+G
Sbjct: 519 LIPLKDHY------TCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHG 569
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
P+ +L+ C R+ +H + F + + N L+DVY + C++ AR++
Sbjct: 13 PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F RM +R +WNS+I +GF+ EA F M + D+ S+ ++ +
Sbjct: 73 FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMP----EPDQCSWNSMVSGFAQHDRF 128
Query: 280 EDGLQYFDIMKK 291
E+ L+YF M +
Sbjct: 129 EESLEYFVKMHR 140
>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g02750-like [Cucumis sativus]
Length = 741
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 140/270 (51%), Gaps = 24/270 (8%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN 97
S+ ++ +V W S I+ + G EA F M C D S N
Sbjct: 350 SQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMV-----------------CKDMVSWN 392
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQI 155
M++ YA+ G+MD A +F+ M R W +L+ G+V+ + EAL F +M+
Sbjct: 393 TMIAA-----YAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQ 447
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
G +PD TI+ L AN+ L +G+ +H K F +++ V N ++ +Y++ G +
Sbjct: 448 QGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPE 507
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
A VF + + +VSWNS+I G+A+NG EA+E F +M DEV+FTG L+AC+H
Sbjct: 508 AENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNH 567
Query: 276 AGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G ++ GL F M + Y + PQ EH+ C+
Sbjct: 568 GGFVDQGLNLFKSMTETYSIKPQSEHYACV 597
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 119/262 (45%), Gaps = 25/262 (9%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF-------- 93
+ V W S +S + ++G ++ L+F S V G D
Sbjct: 168 VKNVVSWNSILSGYTKNG-KMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFK 226
Query: 94 --PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
P+ NV+ +L +A +GRM A +F+ M + W A++ +V+ + ++A +
Sbjct: 227 KIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKL 286
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F M E D ++ +++N V L + +P + N+ +++ Y +
Sbjct: 287 FMEMP----EKDSVSWTAMINGYVRVGKLLQAREILNLMPYK----NIAAQTAMINGYLQ 338
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G ++ A ++F ++ R V WNS+I G+A G EAL F Q+ V K D VS+
Sbjct: 339 SGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLF---QEMVCK-DMVSWNTM 394
Query: 270 LTACSHAGLIEDGLQYFDIMKK 291
+ A + AG ++ L+ F+ M++
Sbjct: 395 IAAYAQAGQMDKALEMFNEMQE 416
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
N+ N+++ Y++ G I AR++F M +R LVSWNS+I G+ N V +A F+ M
Sbjct: 45 NIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRM- 103
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
FK D S+T +T + G +E + F+++
Sbjct: 104 ---FKRDIYSWTLMITCYTRIGELEKARELFNLL 134
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 35/207 (16%)
Query: 52 ISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKF 111
IS+ RSG I EA F +M N++ +++ YAK
Sbjct: 22 ISQLGRSGRIEEAVAVFLKM----------------------TERNIVTYNSMISAYAKN 59
Query: 112 GRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
GR+ A +FD+M R W +++ G++ + E+A F M + D + ++
Sbjct: 60 GRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRM----FKRDIYSWTLMI 115
Query: 170 NVCANVRTLGIGLWMHRYVP-KQDFKDNVRVC-NTLMDVYSRFGCIEFARQVFQRMHKRT 227
+ L + +P KQD VC N L+ Y++ A+++F M +
Sbjct: 116 TCYTRIGELEKARELFNLLPDKQD-----TVCRNALIAGYAKKRLFREAKKLFDEMLVKN 170
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLM 254
+VSWNSI+ G+ NG + L++F M
Sbjct: 171 VVSWNSILSGYTKNGKMQLGLQFFEAM 197
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
F N+R+ R G IE A VF +M +R +V++NS+I +A NG + A E F+
Sbjct: 16 FTQNLRISQ-----LGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFD 70
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
LM + + VS+ + H L+ED + FD M K
Sbjct: 71 LMP----QRNLVSWNSMIAGYLHNELVEDAARLFDRMFK 105
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 41/256 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V W S I+ + + + +AA F RM I TL+ C
Sbjct: 78 VSWNSMIAGYLHNELVEDAARLFDRMF-----KRDIYSWTLMITC--------------- 117
Query: 106 DMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
Y + G ++ A +F+++ C AL+ G+ K+ F EA + F M + V
Sbjct: 118 --YTRIGELEKARELFNLLPDKQDTVCR--NALIAGYAKKRLFREAKKLFDEMLVKNV-- 171
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
++ S+L+ + +GL + ++ NV N ++D Y G ++ A F
Sbjct: 172 --VSWNSILSGYTKNGKMQLGLQFFEAMGER----NVVSWNLMVDGYVGVGDLDSAWMFF 225
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
+++ +VSW +++ GFA G + EA FN M + VS+ + A I+
Sbjct: 226 KKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMP----TKNLVSWNAMIGAYVRENQID 281
Query: 281 DGLQYFDIMKKIYRVS 296
D + F M + VS
Sbjct: 282 DAYKLFMEMPEKDSVS 297
>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
Length = 693
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 142/284 (50%), Gaps = 20/284 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
+ +V W + I + +G EA F RM G + + + + L C +
Sbjct: 182 VRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRR 241
Query: 95 ----------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF---WTALLNGFVKRD 141
S+NV V+ AL+ YAK R DLA VF+ + W A++ GF + +
Sbjct: 242 VHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNE 301
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
E+A F MQ+ V PD T++SV+ A++ W+H Y + +V V
Sbjct: 302 CPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLT 361
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+D+YS+ G + AR++F R +++WN++I G+ +GF A+E F M+
Sbjct: 362 ALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLP 421
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+E +F L ACSHAGL+++G +YF MKK Y + P +EH+G +
Sbjct: 422 NETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTM 465
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 105/203 (51%), Gaps = 6/203 (2%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
++ + STAL +MY K R A VFD M D W A++ G+ + A+E
Sbjct: 48 ASESIASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVR 107
Query: 153 MQ--ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
MQ G PD +T++SVL CA+ R L +H + + + V V ++D Y +
Sbjct: 108 MQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKC 167
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGA 269
G +E AR VF M R VSWN++I G+A NG EA+ F ++Q+GV TD S A
Sbjct: 168 GAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTD-ASVLAA 226
Query: 270 LTACSHAGLIEDGLQYFDIMKKI 292
L AC G +++ + +++ ++
Sbjct: 227 LQACGELGYLDEVRRVHELLVRV 249
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 117/261 (44%), Gaps = 25/261 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLY--GTNPSHITFVTLLSGCADFPSNN------ 97
V W + ++ + R+G A RM+ G P +T V++L CAD + +
Sbjct: 83 VAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREVH 142
Query: 98 -----------VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
V VSTA+LD Y K G ++ A VFD M R W A+++G+
Sbjct: 143 AFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNAT 202
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA+ F M GV+ ++++ L C + L +H + + NV V N L+
Sbjct: 203 EAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALI 262
Query: 205 DVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
Y++ + A QVF + +K+T +SWN++I+GF N +A F MQ + D
Sbjct: 263 TTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDS 322
Query: 264 VSFTGALTACSHAGLIEDGLQ 284
+ + A + I D LQ
Sbjct: 323 FTLVSVIPAVAD---ISDPLQ 340
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 26/220 (11%)
Query: 27 KRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL 86
KR ++ Q N T + W + I ++ C +A F RM+L P T V++
Sbjct: 269 KRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSV 328
Query: 87 LSGCADFP-----------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF 129
+ AD +V V TAL+DMY+K GR+ +A +FD R
Sbjct: 329 IPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHV 388
Query: 130 --WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
W A+++G+ + + A+E F M+ +G P+ T +SVL C++ + G +Y
Sbjct: 389 ITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEG---QKY 445
Query: 188 VP--KQDF--KDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
K+D+ + + T++D+ R G ++ A + M
Sbjct: 446 FASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNM 485
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
P T ++L +CA L G +H + + L ++Y + AR+V
Sbjct: 14 PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ--KGVFKTDEVSFTGALTACSHA 276
F RM R V+WN+++ G+A NG A+E MQ +G + D V+ L AC+ A
Sbjct: 74 FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADA 132
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 150/279 (53%), Gaps = 21/279 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEF-TRMRLYGTNPSHITFVTLLSGCA------------- 91
V WT I+ + + G + + ALE +M+ P+ IT+ ++L GC
Sbjct: 264 VTWTLLIAGYAQQGQV-DVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHR 322
Query: 92 ----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ V AL+ MY K G + A +F + D WTA++ G+ + + +E
Sbjct: 323 YIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDE 382
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A++ FR MQ G++PD +T S L C++ L G +H+ + + +V + + L+
Sbjct: 383 AIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVS 442
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G ++ AR VF +M +R +V+W ++I G A +G EALEYF M+K K D+V+
Sbjct: 443 MYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVT 502
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
FT L+AC+H GL+E+G ++F M Y + P +EH+ C
Sbjct: 503 FTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSC 541
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 127/269 (47%), Gaps = 26/269 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
T+ + +S C+ G + EA M L GT F LL CA S
Sbjct: 61 TLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHA 120
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N + LL MYAK G + A VFD +R + WTA++ FV + E
Sbjct: 121 AILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLE 180
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A + + M+++G +PD +T +S+LN N L +G +H + K + RV +L+
Sbjct: 181 AYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVG 240
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G I A+ +F ++ ++ +V+W +I G+A G V ALE MQ+ ++++
Sbjct: 241 MYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKIT 300
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYR 294
+T L C+ +E G KK++R
Sbjct: 301 YTSILQGCTTPLALEHG-------KKVHR 322
>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 512
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 140/287 (48%), Gaps = 50/287 (17%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + IS + R + F M PS +T V++LS C+
Sbjct: 155 VTWNAMISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLSACSKLKDLESGQKVHKY 214
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF------------------- 129
+N++V AL+DMYA G M +A +F+ M+ D
Sbjct: 215 ISDHVVQSNLIVENALIDMYAACGEMSVALGIFESMKSRDVISWTAIVTGFANIGQLDIA 274
Query: 130 --------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
WTA+++G+++ + F+EAL F MQ S V+PD T++S+L CA +
Sbjct: 275 RKYFDQMPERDYVSWTAMIDGYLQVNCFKEALVLFHEMQTSNVKPDEFTMVSILTACAQL 334
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
L +G W+ Y+ K K++ V N L+D+Y + G +E AR +F M + +W ++I
Sbjct: 335 GALELGEWVRTYIDKNKVKNDAYVGNALIDMYFKCGNVEKARSIFNSMPRPDKFTWTAMI 394
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
VG A+NG+ EAL+ F M K DE+++ G L AC+H G++++G
Sbjct: 395 VGLAINGYGEEALDMFVQMLKASVTPDEITYVGVLCACTHTGMVDEG 441
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 33/220 (15%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+NV V AL++MY+ G D+A +FD+ D W A+++ + + +++ F M
Sbjct: 121 SNVFVQNALINMYSLCGLTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEM 180
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ V P +T++SVL+ C+ ++ L G +H+Y+ + N+ V N L+D+Y+ G +
Sbjct: 181 EKKRVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEM 240
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFA--------------------------VNGFV--- 244
A +F+ M R ++SW +I+ GFA ++G++
Sbjct: 241 SVALGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVN 300
Query: 245 --GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
EAL F+ MQ K DE + LTAC+ G +E G
Sbjct: 301 CFKEALVLFHEMQTSNVKPDEFTMVSILTACAQLGALELG 340
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 2/175 (1%)
Query: 110 KFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
+FG M+ A +FD + W +L G+ + D + + + M + V PD T
Sbjct: 34 EFGDMNYARQLFDTIPEPTVFHWNTMLKGYSRIDSPKLGVSMYLDMLKNDVLPDCYTYPF 93
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
++ G +H +V K NV V N L+++YS G + AR +F +K
Sbjct: 94 LIKGFKKDIAFEYGKELHCHVVKYGLGSNVFVQNALINMYSLCGLTDMARGIFDMSYKTD 153
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+V+WN++I + + F+ M+K V+ L+ACS +E G
Sbjct: 154 VVTWNAMISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLSACSKLKDLESG 208
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 123/211 (58%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V+ +++ AK G +D + +FD M R W ++++G+V+ EALE FR MQ
Sbjct: 189 DVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQ 248
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
VEP T++S+L+ CA++ L G W+H YV + F+ NV V ++D+Y + G I
Sbjct: 249 GERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIV 308
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +VF+ R L WNSII+G A+NG+ +A+EYF+ ++ K D VSF G LTAC
Sbjct: 309 KAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLTACK 368
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ G + YF +M Y + P I+H+ C+
Sbjct: 369 YIGAVGKARDYFSLMMNKYEIEPSIKHYTCM 399
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 29/217 (13%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T V W S IS + R+ ++EA F +M+ PS T V+LLS CA +
Sbjct: 220 TRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWVH 279
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDV--MRGCDFWTALLNGFVKRDYFE 144
NV+V TA++DMY K G + A VF+ RG W +++ G Y
Sbjct: 280 DYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALNGYER 339
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLG-----IGLWMHRYVPKQDFKDNVRV 199
+A+EYF ++ S ++PD+++ I VL C + +G L M++Y + + +++
Sbjct: 340 KAIEYFSKLEASDLKPDHVSFIGVLTACKYIGAVGKARDYFSLMMNKY----EIEPSIKH 395
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
+++V + +E A Q+ + M K + W S++
Sbjct: 396 YTCMVEVLGQAALLEEAEQLIKGMPLKADFIIWGSLL 432
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 33/213 (15%)
Query: 112 GRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
G ++ A ++F + + W ++ GF + A+ F M S V P LT SV
Sbjct: 72 GDINYAYLLFTTIPSPNLYCWNTIIRGFSRSSTPHLAISLFVDMLCSSVLPQRLTYPSVF 131
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
A + G +H V K + + + NT++ +Y+ G + AR+VF + +V
Sbjct: 132 KAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLDVV 191
Query: 230 SWNSIIVGFA--------------------------VNGFVG-----EALEYFNLMQKGV 258
+ NS+I+G A ++G+V EALE F MQ
Sbjct: 192 ACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGER 251
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+ E + L+AC+H G ++ G D +K+
Sbjct: 252 VEPSEFTMVSLLSACAHLGALKHGEWVHDYVKR 284
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 145/279 (51%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WTS I+ + + EA F M+L+G P +I + +S CA
Sbjct: 412 VSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSR 471
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
S +V + AL+++YA+ GR A +F+ + D W +++GF + +EEA
Sbjct: 472 VYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEA 531
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F M +GV+ + T +S ++ AN+ + G +H V K V N L+ +
Sbjct: 532 LEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISL 591
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G IE A+ F M +R VSWN+II + +G+ EAL+ F+ M++ K ++V+F
Sbjct: 592 YGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTF 651
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSH GL+E+GL YF M + + P+ +H+ C+
Sbjct: 652 IGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACV 690
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 126/268 (47%), Gaps = 24/268 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
V + + ISRH + G E+ALE F MRL G P +T +LL+ CA
Sbjct: 210 VTFNTLISRHAQCGNG-ESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHS 268
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
S + ++ +LLD+Y K G + A +F + W +L + + +
Sbjct: 269 YLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAK 328
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+ + F M +GV P+ T +L C + +G +H K F+ ++ V L+D
Sbjct: 329 SFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLID 388
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS++G ++ AR++ + + + +VSW S+I G+ + F EALE F MQ D +
Sbjct: 389 MYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIG 448
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIY 293
A++AC+ + G Q I ++Y
Sbjct: 449 LASAISACAGIKAMRQGQQ---IHSRVY 473
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 120/258 (46%), Gaps = 19/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + +S + R+G EA + +M G P+ ++LS C
Sbjct: 109 VSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQ 168
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVKRDYFEEA 146
+ +V AL+ +Y +FG + LA VF M CD T L++ + E A
Sbjct: 169 VYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESA 228
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F M++SG PD +TI S+L CA++ L G +H Y+ K + + +L+D+
Sbjct: 229 LEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDL 288
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G I A ++F+ + +V WN ++V + + ++ + F M + +E ++
Sbjct: 289 YVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTY 348
Query: 267 TGALTACSHAGLIEDGLQ 284
L C++AG I G Q
Sbjct: 349 PCLLRTCTYAGEINLGEQ 366
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 2/190 (1%)
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L+D+YAK G + A VF+ + D W A+L+G+ + EEA+ + M SGV P
Sbjct: 83 LIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPT 142
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
+ SVL+ C G +H V KQ V N L+ +Y RFG + A +VF
Sbjct: 143 PYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFS 202
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
M V++N++I A G ALE F M+ + D V+ L AC+ G +
Sbjct: 203 EMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNK 262
Query: 282 GLQYFDIMKK 291
G Q + K
Sbjct: 263 GKQLHSYLLK 272
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVF 259
N L+D+Y++ G ++ AR+VF+++ R VSW +++ G+A NG EA+ ++ M GV
Sbjct: 81 NLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVV 140
Query: 260 KTDEVSFTGALTACSHAGLIEDG 282
T V + L+AC+ A L E G
Sbjct: 141 PTPYV-LSSVLSACTKAALFEQG 162
>gi|255570402|ref|XP_002526160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534537|gb|EEF36236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 762
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 138/257 (53%), Gaps = 23/257 (8%)
Query: 63 EAALEFTRMRLYGTNPSHITFVTLLSGCAD------------------FPSNNVMVSTAL 104
EA + F +M+ G NPS ITF +LL GC ++ + +L
Sbjct: 470 EAIILFEKMQAEGLNPSEITFASLLDGCGGPEQLILGIQIHCLILKRGLQYDDDFLGVSL 529
Query: 105 LDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L MY K R A ++F + WTA+++G + + +EAL++++ M+ PD
Sbjct: 530 LGMYVKSLRKTDARILFSEFSNPKSTILWTAMISGLAQNNCSDEALQFYQEMRSCNALPD 589
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
T +SVL CA + ++G G +H + + + C+ L+D+Y++ G + + QVF+
Sbjct: 590 QATFVSVLRACAVLSSIGDGREIHSLIFRTGLDLDESTCSALIDMYAKCGDVRSSMQVFE 649
Query: 222 RMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
MH K ++SWNS+IVGFA NG+ AL FN M++ D+V+F G LTACSHAG +
Sbjct: 650 DMHSKNDVISWNSMIVGFAKNGYAENALRIFNEMKQAHVIPDDVTFLGVLTACSHAGRVS 709
Query: 281 DGLQYFDIMKKIYRVSP 297
+G Q FD MK + +P
Sbjct: 710 EGRQIFD-MKPSFVTAP 725
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 121/257 (47%), Gaps = 19/257 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-----DFP----- 94
V W IS H + G ++ F MR G + T ++LS A DF
Sbjct: 150 VVAWNVMISGHAQRGHETKSIELFCNMRKAGIKSTRSTLGSVLSAIASLTDLDFGLLVHA 209
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+NV V ++L++MYAK ++ A VFD + R W A++ G+ + Y E
Sbjct: 210 EAIKQGLDSNVYVGSSLINMYAKCKELEAAKKVFDPIDERNVVLWNAMVGGYAQNGYAHE 269
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+E M+ G PD T S+L+ CA + + G +H + K F N+ V N L+D
Sbjct: 270 VIELLSNMKSCGFHPDEFTYTSILSACACLEHVEGGRQLHSIIIKNKFASNLFVGNALID 329
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G +E AR+ F+ M R VSWN+IIVG+ EA F M DEVS
Sbjct: 330 MYAKSGFLEDARKQFELMKSRDNVSWNAIIVGYVQEEDEVEAFLMFQKMHLVGILPDEVS 389
Query: 266 FTGALTACSHAGLIEDG 282
L+AC++ E G
Sbjct: 390 LASILSACANVEGFEQG 406
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 130/249 (52%), Gaps = 20/249 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
TV WTS I+ + ++G EA F +M+ G P + FVT+++
Sbjct: 84 TVSWTSLIAGYVKAGLPEEALEVFEQMKKVGREPDQVAFVTVINA--------------- 128
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
Y GR+D A +F M + W +++G +R + +++E F M+ +G++
Sbjct: 129 ---YVALGRLDDALGLFFQMPNPNVVAWNVMISGHAQRGHETKSIELFCNMRKAGIKSTR 185
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T+ SVL+ A++ L GL +H KQ NV V ++L+++Y++ +E A++VF
Sbjct: 186 STLGSVLSAIASLTDLDFGLLVHAEAIKQGLDSNVYVGSSLINMYAKCKELEAAKKVFDP 245
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ +R +V WN+++ G+A NG+ E +E + M+ F DE ++T L+AC+ +E G
Sbjct: 246 IDERNVVLWNAMVGGYAQNGYAHEVIELLSNMKSCGFHPDEFTYTSILSACACLEHVEGG 305
Query: 283 LQYFDIMKK 291
Q I+ K
Sbjct: 306 RQLHSIIIK 314
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 136/274 (49%), Gaps = 33/274 (12%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
V W + + + ++G E + M+ G +P T+ ++LS CA
Sbjct: 251 VVLWNAMVGGYAQNGYAHEVIELLSNMKSCGFHPDEFTYTSILSACACLEHVEGGRQLHS 310
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
++N+ V AL+DMYAK G ++ A F++M+ D W A++ G+V+ + E
Sbjct: 311 IIIKNKFASNLFVGNALIDMYAKSGFLEDARKQFELMKSRDNVSWNAIIVGYVQEEDEVE 370
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A F+ M + G+ PD +++ S+L+ CANV G +H K + ++ ++L+D
Sbjct: 371 AFLMFQKMHLVGILPDEVSLASILSACANVEGFEQGKPIHCLSVKSGLETSLYAGSSLID 430
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA-VNGFVGEALEYFNLMQKGVFKTDEV 264
+Y++ G + A+++ + M + ++VS N++I G+A VN + EA+ F MQ E+
Sbjct: 431 MYAKCGDVGSAQKILKSMPEHSVVSINALIAGYAPVN--LEEAIILFEKMQAEGLNPSEI 488
Query: 265 SFTGALTACS-----------HAGLIEDGLQYFD 287
+F L C H +++ GLQY D
Sbjct: 489 TFASLLDGCGGPEQLILGIQIHCLILKRGLQYDD 522
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 97/240 (40%), Gaps = 65/240 (27%)
Query: 74 YGTNPSHITFVTLLSGCADFPS---------NNVMVS--------TALLDMYAKFGRMDL 116
+G P+ TF +LSGCA S N V + AL+DMYAK RM
Sbjct: 12 HGMWPNEFTFAIVLSGCARLDSVEFGRLVHCNVVKLGFEFSSFCVGALIDMYAKNNRMSD 71
Query: 117 ATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
VFD D WT+L+ G+VK EEALE F M+ G EPD + ++V+N
Sbjct: 72 CRRVFDGGVSLDTVSWTSLIAGYVKAGLPEEALEVFEQMKKVGREPDQVAFVTVIN---- 127
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
Y G ++ A +F +M +V+WN +
Sbjct: 128 -------------------------------AYVALGRLDDALGLFFQMPNPNVVAWNVM 156
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS-----------HAGLIEDGL 283
I G A G +++E F M+K K+ + L+A + HA I+ GL
Sbjct: 157 ISGHAQRGHETKSIELFCNMRKAGIKSTRSTLGSVLSAIASLTDLDFGLLVHAEAIKQGL 216
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---- 95
S +T+ WT+ IS ++ C EA + MR P TFV++L CA S
Sbjct: 550 SNPKSTILWTAMISGLAQNNCSDEALQFYQEMRSCNALPDQATFVSVLRACAVLSSIGDG 609
Query: 96 ---NNVMVST----------ALLDMYAKFGRMDLATVVFDVMRGCD---FWTALLNGFVK 139
++++ T AL+DMYAK G + + VF+ M + W +++ GF K
Sbjct: 610 REIHSLIFRTGLDLDESTCSALIDMYAKCGDVRSSMQVFEDMHSKNDVISWNSMIVGFAK 669
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG 181
Y E AL F M+ + V PD +T + VL C++ + G
Sbjct: 670 NGYAENALRIFNEMKQAHVIPDDVTFLGVLTACSHAGRVSEG 711
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%)
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ + ++ G+ P+ T VL+ CA + ++ G +H V K F+ + L+D+
Sbjct: 3 LKCYGLLWSHGMWPNEFTFAIVLSGCARLDSVEFGRLVHCNVVKLGFEFSSFCVGALIDM 62
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ + R+VF VSW S+I G+ G EALE F M+K + D+V+F
Sbjct: 63 YAKNNRMSDCRRVFDGGVSLDTVSWTSLIAGYVKAGLPEEALEVFEQMKKVGREPDQVAF 122
Query: 267 TGALTACSHAGLIEDGLQYF 286
+ A G ++D L F
Sbjct: 123 VTVINAYVALGRLDDALGLF 142
>gi|242082329|ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
gi|241942283|gb|EES15428.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
Length = 498
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 148/278 (53%), Gaps = 20/278 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------D 92
V W+ + + +G + A F RM G N IT+ +++G +
Sbjct: 192 VSWSVMVGAYAAAGELDVAREMFDRMPAIGRN--IITWNLMVTGFGRHGLLPLARKMFDE 249
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P N++ A+L YA G MD+A +FDVM D WT +++G+ + + + LE F
Sbjct: 250 MPIRNIVSWNAMLRGYAMNGEMDVARELFDVMPEKDVVSWTCMISGYAQAGRYAQTLELF 309
Query: 151 RVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD--FKDNVRVCNTLMDVY 207
R MQ G + P+ +T++SVL+ CA++ L G W H ++ K + + L+D+Y
Sbjct: 310 RTMQSHGDIRPNEVTMVSVLSACAHLTALEEGRWAHVFIDKHKMVLDNEFNLGAALIDMY 369
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
++ G + A ++F + ++ + +WN++I G AVN ++ F M+ K D+++F
Sbjct: 370 AKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDARRCIDVFEQMKMSEEKPDDITFV 429
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTAC+HAGL+++G QYF M V P+++H+GC+
Sbjct: 430 SVLTACAHAGLVDEGRQYFQSMSSACGVQPELKHYGCM 467
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 6/147 (4%)
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLG-IGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F + SG PD+ T ++ + + + G ++ ++ F + V N+L+ +Y+
Sbjct: 80 FSSLLRSGYLPDHFTFPPLVKSASRLSSFPRTGAQVYAQAARRGFLADTFVVNSLLAMYA 139
Query: 209 RFGCIEFARQVFQRMHK-RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
F R VF+ + +VSWN+++ G+A G +G A F+ M + VS++
Sbjct: 140 AFRDTASMRAVFESCAEVADVVSWNTVVFGYAKCGEIGNARRVFDEMP----HRNGVSWS 195
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYR 294
+ A + AG ++ + FD M I R
Sbjct: 196 VMVGAYAAAGELDVAREMFDRMPAIGR 222
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 145/265 (54%), Gaps = 27/265 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
TV W + + + ++G + EAA E F RM P NV+ +
Sbjct: 102 TVSWNTILDGYTKAGEV-EAAFELFQRM----------------------PERNVVSWST 138
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
++ Y K G +++A V+FD M + WT +++ ++ +EA + F M+ + VE D
Sbjct: 139 MVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELD 198
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
++S+L CA +L +G +HRYV K++ + VCN L+D++ + GC+ A VF
Sbjct: 199 VAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFD 258
Query: 222 -RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
++ VSWNSII GFA++G +ALE F M++ F D V+ L+AC+H G ++
Sbjct: 259 TETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVD 318
Query: 281 DGLQYFDIMKKIYRVSPQIEHHGCI 305
+G ++F M++ Y + PQIEH+GC+
Sbjct: 319 EGRRHFSNMERDYGIMPQIEHYGCM 343
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 17/201 (8%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+ V AL+D Y+K G A VFD M D W + V+ + F M
Sbjct: 38 EDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM 97
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
E D ++ ++L+ + + + +P++ NV +T++ Y + G +
Sbjct: 98 P----EKDTVSWNTILDGYTKAGEVEAAFELFQRMPER----NVVSWSTMVSGYCKKGDL 149
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E AR +F +M + LV+W ++ A G V EA + F M++ + D + L AC
Sbjct: 150 EMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAAC 209
Query: 274 SHAGLIEDGLQYFDIMKKIYR 294
+ +G + G K+I+R
Sbjct: 210 AESGSLSLG-------KRIHR 223
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H +V K ++ V N L+D YS+ G AR+VF M +R +VSWN+ + G
Sbjct: 27 VHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGE 86
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
+ + F+ M + D VS+ L + AG +E + F M + VS
Sbjct: 87 LAGVRKLFDEMP----EKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVS 135
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 141/280 (50%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
++ WT+ I+ ++G EA +F M + G TF ++L+ C F +
Sbjct: 235 SISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHA 294
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+N+ V +ALLDMY K + A VF MR + WTA+L G+ + Y EE
Sbjct: 295 YIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEE 354
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F MQ + + PD T+ SV++ CAN+ +L G H V V N L+
Sbjct: 355 AVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALIT 414
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y + G +E A Q+F M R VSW +++ G+A G E + F M D V+
Sbjct: 415 LYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVT 474
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L+ACS AGL+E G YF+ M K +R++P +H+ C+
Sbjct: 475 FVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCM 514
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 137/292 (46%), Gaps = 53/292 (18%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLL-----SGCADFP----- 94
V W S +S + +G I E+ + M G+ N + ITF T+L G D
Sbjct: 103 VSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHG 162
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFD----------------VMRGCDF-- 129
+ + V + L+DMYAK G ++ A +F+ ++R C F
Sbjct: 163 QIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLR-CRFIV 221
Query: 130 ----------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173
WT ++ G + F+EA++ F+ M I G D T SVL C
Sbjct: 222 EAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACG 281
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
L G +H Y+ + D++DN+ V + L+D+Y + +++A VF++M + ++SW +
Sbjct: 282 GFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTA 341
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
++VG+ NG+ EA+ F MQ+ D+ + +++C++ +E+G Q+
Sbjct: 342 MLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQF 393
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 100/199 (50%), Gaps = 7/199 (3%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P N+ LL Y+K G + VFD M D W +LL+G+ E++ +
Sbjct: 67 PQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYN 126
Query: 152 VMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+M G V + +T ++L + +N + +G +H + K ++ + V + L+D+Y++
Sbjct: 127 MMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKT 186
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G I A ++F+ + ++ +V +N++I G F+ EA + F+ M + D +S+T +
Sbjct: 187 GFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMP----EKDSISWTTII 242
Query: 271 TACSHAGLIEDGLQYFDIM 289
T + GL ++ + F M
Sbjct: 243 TGLTQNGLFKEAVDKFKEM 261
>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 500
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 128/212 (60%), Gaps = 8/212 (3%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
NVM+S Y K G + A +FDVM R WT ++ + + EA+E FR MQ
Sbjct: 139 NVMISG-----YVKSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQ 193
Query: 155 IS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ G+EPD + ++SVL+ C ++ + +G W+HR+V ++ + + N ++D+Y + GC+
Sbjct: 194 VEEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLCWQIPLMNAIIDMYVKLGCV 253
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A +VF+ M ++++V+W ++I GFA++G EA+E F M+ ++V+F L+AC
Sbjct: 254 RKAVEVFEGMDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLAILSAC 313
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH GL + G YF IM YR+ ++EH+GC+
Sbjct: 314 SHVGLTDLGRWYFKIMVSQYRIKQRVEHYGCM 345
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 130/211 (61%), Gaps = 7/211 (3%)
Query: 99 MVST--ALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQ 154
M+ST A++ +++ G +++A FD M+ D W+A+++G+++ F EALE F MQ
Sbjct: 235 MISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQ 294
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ P + SVL+ CAN+ L G W+H Y + + + + +L+D+Y++ G I+
Sbjct: 295 KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRID 354
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +VF++M + + SWN++I G A++G +A++ F+ M +E++F G L AC+
Sbjct: 355 LAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACA 411
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H GL++ GL F+ M+K Y V PQIEH+GCI
Sbjct: 412 HGGLVQKGLTIFNSMRKEYGVEPQIEHYGCI 442
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 24/211 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ W++ I + + GC +EA F +M+ P ++LS CA+ +
Sbjct: 268 ISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTY 327
Query: 96 ---NNV----MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N++ ++ T+L+DMYAK GR+DLA VF+ M + W A++ G E+A
Sbjct: 328 AKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDA 387
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLMD 205
++ F M I+ P+ +T + VLN CA+ + GL + + K+ + + ++D
Sbjct: 388 IDLFSKMDIN---PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVD 444
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
+ R G + A +V + + T W +++
Sbjct: 445 LLGRAGLLTEAEKVVSSIPTEPTPAVWGALL 475
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 93/207 (44%), Gaps = 39/207 (18%)
Query: 120 VFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
VFD +R + W ++ ++ + +A+ + M ++ P+ T +VL C++
Sbjct: 93 VFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGV 152
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC------------------------- 212
+ G+ +H ++ K + + ++ + +Y+ FG
Sbjct: 153 VAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMID 212
Query: 213 -------IEFARQVFQRMHKRTLVS-WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+E AR++F+ M R+++S WN++I GF+ G V A E+F+ M+ + DE+
Sbjct: 213 GYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMK----ERDEI 268
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKK 291
S++ + G + L+ F M+K
Sbjct: 269 SWSAMIDGYIQEGCFMEALEIFHQMQK 295
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 132/218 (60%), Gaps = 4/218 (1%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
+ P+ +V+ T L+ Y K G M+ A +FD + D WT +++GF + EA+ +
Sbjct: 207 EMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMF 266
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF--KDNVRVCNTLMDVY 207
F MQ GVE D +T+I V++ CA + W+ K +F K +V V + L+D+Y
Sbjct: 267 FEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMY 326
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
S+ G + A +VFQ M +R + S++S+I+GFA++G V +A++ F+ M K K + V+F
Sbjct: 327 SKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFI 386
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G LTACSHAG++E G Q F++M+K Y + P +H+ C+
Sbjct: 387 GVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCM 424
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 32/181 (17%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH-RY 187
+ AL+ G++ + +E+ E++ +M+ GV P T ++ C +G+G +H +
Sbjct: 113 LYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQT 172
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII------------ 235
+ F +++ V N+++D+Y + G +E R+VF M R ++SW +I
Sbjct: 173 ILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESA 232
Query: 236 -------------------VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
GFA N EA+ +F MQ+ +TDE++ G ++AC+
Sbjct: 233 GELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQL 292
Query: 277 G 277
G
Sbjct: 293 G 293
>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like, partial [Cucumis sativus]
Length = 472
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 24/281 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF------------ 93
V WTS IS + G EA +F M + P+ T VT LS C+
Sbjct: 85 VSWTSIISGLSKLGFEKEALSKFLSMNV---RPNSTTLVTALSTCSSLRCLKLGKAIHGL 141
Query: 94 -----PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
NV++ ALLD Y + + A +F+ M D WT ++ G+ + EEA
Sbjct: 142 RMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEA 201
Query: 147 LEYFRVM-QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV-PKQDFKDNVRVCNTLM 204
+ F+ M + P+ T+++VL+ C+++ L +G W+H Y+ + D + V N L+
Sbjct: 202 VRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNALI 261
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
++Y + G +E A +F+ + +VSW++II G A+NG +A F+LM D+V
Sbjct: 262 NMYVKCGNMEMAILIFKATEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGISPDDV 321
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L+ACSH GLI G+ F+ MK +Y +SPQ+ H+ C+
Sbjct: 322 TFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYACM 362
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
+ ++ T L C + GL +H ++ K ++ + N+L+ Y G + A
Sbjct: 14 ISHNHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSAS 73
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
+F + +VSW SII G + GF EAL F M + + + AL+ CS
Sbjct: 74 LIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSMN---VRPNSTTLVTALSTCS 127
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 145/284 (51%), Gaps = 19/284 (6%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------ 94
T D V WT+ IS + + EA F M G +I F + +S CA
Sbjct: 477 TEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGR 536
Query: 95 -----------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
S ++ + AL+ +YA+ GR+ A + F+ + D W L++GF +
Sbjct: 537 QIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSG 596
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
Y E+AL+ F M + +E + T S ++ AN+ + G +H + K+ F ++ V N
Sbjct: 597 YCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSN 656
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+ Y++ G IE AR+ F M ++ VSWN++I G++ +G+ EA+ F M++
Sbjct: 657 ALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMP 716
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ V+F G L+ACSH GL+ GL YF+ M K + + P+ H+ C+
Sbjct: 717 NHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACV 760
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 134/274 (48%), Gaps = 21/274 (7%)
Query: 31 ISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSG 89
+S + SK V + S IS + G + ALE FT+M+ P +T +LLS
Sbjct: 265 VSAEKVFSKMQSKDEVSFNSLISGLAQQG-FSDGALELFTKMKRDYLKPDCVTVASLLSA 323
Query: 90 CADFP-----------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FW 130
CA S++++V ALLD+Y + A +F + + W
Sbjct: 324 CASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLW 383
Query: 131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
+L F K D E+ FR MQI G+ P+ T S+L C +V L +G +H V K
Sbjct: 384 NVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIK 443
Query: 191 QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 250
F+ NV VC+ L+D+Y++ G ++ A + + + + +VSW ++I G+A + EAL++
Sbjct: 444 TGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKH 503
Query: 251 FNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
F M ++D + F+ A++AC+ + G Q
Sbjct: 504 FKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQ 537
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 111/237 (46%), Gaps = 20/237 (8%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSN------------------NVMVSTALLDMYA 109
F+ M +P+ I+F ++L C+ + ++S L+ +YA
Sbjct: 99 FSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYA 158
Query: 110 KFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
K G + A VFD + D W A+++GF + Y EEA+ F M +G+ P S
Sbjct: 159 KNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSS 218
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
VL+ C ++ +G +H V K VCN L+ +YSR A +VF +M +
Sbjct: 219 VLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKD 278
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
VS+NS+I G A GF ALE F M++ K D V+ L+AC+ G + G Q
Sbjct: 279 EVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQ 335
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 10/214 (4%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
N ++ L+D+Y G +D VF+ M R W +++GF+++ L+ F M
Sbjct: 43 NESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCM 102
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGI--GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
V P ++ SVL C+ R +GI +H + + + N L+ +Y++ G
Sbjct: 103 IEENVSPTEISFASVLRACSGHR-IGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNG 161
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFTGAL 270
I AR+VF + + VSW ++I GF+ NG+ EA+ F M G+F T V F+ L
Sbjct: 162 LIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYV-FSSVL 220
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
+ C+ L + G Q + +++ +E + C
Sbjct: 221 SGCTKIKLFDVGEQLHAL---VFKYGSSLETYVC 251
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M+ G+ + T I +L++C N +L +H + K F + +CN L+DVY G
Sbjct: 1 MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ +VF+ M R++ SW+ II GF L+ F+ M + E+SF L A
Sbjct: 61 LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120
Query: 273 CS 274
CS
Sbjct: 121 CS 122
>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1028
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 142/265 (53%), Gaps = 22/265 (8%)
Query: 63 EAALEFTRMRLYGTNPSHITFVTLLSGCAD------------------FPSNNVMVSTAL 104
EA + F M G NPS ITF T++ C F S + +L
Sbjct: 612 EAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISL 671
Query: 105 LDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L +Y RM A +F + + WT +++G + ++EEAL++++ M+ G PD
Sbjct: 672 LGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPD 731
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
T ++VL VC+ + +L G +H + + NTL+D+Y++ G ++ + QVF
Sbjct: 732 QATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFD 791
Query: 222 RMHKRT-LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
M +R+ +VSWNS+I G+A NG+ +AL+ F+ M++ DE++F G LTACSHAG +
Sbjct: 792 EMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVS 851
Query: 281 DGLQYFDIMKKIYRVSPQIEHHGCI 305
DG + F++M Y + +++H C+
Sbjct: 852 DGRKIFEMMIGQYGIEARVDHVACM 876
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 124/249 (49%), Gaps = 20/249 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
TV WT S + ++G EA + F RMR G P H+ FVT++
Sbjct: 226 TVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVI----------------- 268
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+ Y G++ A ++F M D W +++G KR A+EYF M+ S V+
Sbjct: 269 -NTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTR 327
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T+ SVL+ V L +GL +H K N+ V ++L+ +YS+ +E A +VF+
Sbjct: 328 STLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEA 387
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ +R V WN++I G+A NG + +E F M+ + D+ +FT L+ C+ + +E G
Sbjct: 388 LEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMG 447
Query: 283 LQYFDIMKK 291
Q+ I+ K
Sbjct: 448 SQFHSIIIK 456
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 117/258 (45%), Gaps = 19/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W IS H + GC + A F MR + T ++LS
Sbjct: 293 VAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAE 352
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
++N+ V ++L+ MY+K +M+ A VF+ + R W A++ G+ +
Sbjct: 353 AIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKV 412
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+E F M+ SG D T S+L+ CA L +G H + K+ N+ V N L+D+
Sbjct: 413 MELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDM 472
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G +E ARQ+F+ M R VSWN+II G+ + EA + F M +D
Sbjct: 473 YAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACL 532
Query: 267 TGALTACSHAGLIEDGLQ 284
L AC++ + G Q
Sbjct: 533 ASTLKACTNVHGLYQGKQ 550
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 121/261 (46%), Gaps = 24/261 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---------DFPS- 95
V W + I + +G + F M+ G N TF +LLS CA F S
Sbjct: 394 VLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSI 453
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYFE 144
N+ V AL+DMYAK G ++ A +F+ M CD W ++ G+V+ +
Sbjct: 454 IIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHM--CDRDNVSWNTIIGGYVQDENES 511
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA + F M G+ D + S L C NV L G +H K + ++L+
Sbjct: 512 EAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLI 571
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+YS+ G IE AR+VF M + ++VS N++I G++ N + + ++ KGV E+
Sbjct: 572 DMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQNNLEEAVVLFQEMLTKGV-NPSEI 630
Query: 265 SFTGALTACSHAGLIEDGLQY 285
+F + AC + G Q+
Sbjct: 631 TFATIVEACHKPESLTLGTQF 651
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 22/225 (9%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---- 95
S+ + V WT +S H ++G EA + MR G P TFVT+L C+ S
Sbjct: 692 SSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREG 751
Query: 96 -------------NNVMVSTALLDMYAKFGRMDLATVVFDVMR---GCDFWTALLNGFVK 139
+ + S L+DMYAK G M ++ VFD MR W +L+NG+ K
Sbjct: 752 RAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAK 811
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVR 198
Y E+AL+ F M+ S + PD +T + VL C++ + G + + Q + V
Sbjct: 812 NGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVD 871
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
++D+ R+G ++ A + + K W+S++ ++G
Sbjct: 872 HVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHG 916
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 11/188 (5%)
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCDFWT-----ALLNGFVKRDYFEEALEYFRVMQIS 156
++L+DMY+K G ++ A VF M W+ AL+ G+ + + EEA+ F+ M
Sbjct: 568 SSLIDMYSKCGIIEDARKVFSSMPE---WSVVSMNALIAGYSQNN-LEEAVVLFQEMLTK 623
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN-TLMDVYSRFGCIEF 215
GV P +T +++ C +L +G H + K F +L+ +Y +
Sbjct: 624 GVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAE 683
Query: 216 ARQVFQRMHK-RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +F + +++V W ++ G + NGF EAL+++ M+ D+ +F L CS
Sbjct: 684 ACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCS 743
Query: 275 HAGLIEDG 282
+ +G
Sbjct: 744 VLSSLREG 751
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 81/191 (42%), Gaps = 1/191 (0%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM-RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
+ A++D+YAK ++ A F+ + + W ++L+ + + L F + + +
Sbjct: 97 LGNAIVDLYAKCAQVSYAEKQFNSLEKDVTAWNSMLSMYSSIGQPGKVLRSFVSLFENLI 156
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
P+ T VL+ A + G +H + K + N L+D+Y++ + A++
Sbjct: 157 FPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQR 216
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF + V W + G+ G EA+ F M+ + D ++F + G
Sbjct: 217 VFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLGK 276
Query: 279 IEDGLQYFDIM 289
++D F M
Sbjct: 277 LKDARLLFGEM 287
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 150/281 (53%), Gaps = 20/281 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T V WTS+I+ + R G +A F M+ G P T +++ CA S
Sbjct: 636 TIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVH 695
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+N+ V+ AL++MYAK G ++ A +VF + D W ++ G+ +
Sbjct: 696 SYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPN 755
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EALE F MQ +PD +T+ VL CA + L G +H ++ ++ + ++ V L+
Sbjct: 756 EALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALV 814
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G + A+ +F + K+ L+SW +I G+ ++GF EA+ FN M+ + DE
Sbjct: 815 DMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDES 874
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SF+ L ACSH+GL+ +G ++F+ M+ V P++EH+ C+
Sbjct: 875 SFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACV 915
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 21/260 (8%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA----------- 91
D W +S + + G E+ F +M+ G + TF +L A
Sbjct: 433 DKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV 492
Query: 92 -------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
F SN +V++ L+ Y KFG ++ A +FD + D W +++NG V +
Sbjct: 493 HGYVLKLGFGSNTAVVNS-LIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGF 551
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
LE F M I GVE D T++SVL AN+ L +G +H + K F + V NT
Sbjct: 552 SGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNT 611
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+YS+ G + A +VF +M T+VSW S I + G +A+ F+ MQ + D
Sbjct: 612 LLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPD 671
Query: 263 EVSFTGALTACSHAGLIEDG 282
+ T + AC+ + ++ G
Sbjct: 672 IYTVTSIVHACACSSSLDKG 691
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 149/281 (53%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T W + + + ++ +A + +M G +P T +LL C+ S
Sbjct: 372 TVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIH 431
Query: 96 -----NNVMV----STALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
N + V +LL +Y G+ A V+FD M R W ++ G+ + +
Sbjct: 432 GFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPD 491
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA+ FR M G++P + I+ V C+ + L +G +H + K +++ V ++++
Sbjct: 492 EAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSII 551
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ GCI ++++F R+ ++ + SWN II G+ ++G EALE F M + K D+
Sbjct: 552 DMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDF 611
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+FTG L ACSHAGL+EDGL+YF+ M ++ + P++EH+ C+
Sbjct: 612 TFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCV 652
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 109/202 (53%), Gaps = 5/202 (2%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF-RV 152
N+ +++T ++ MY+ G + +VFD +R + W A+++ + + + FE+A+ F +
Sbjct: 32 NDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSEL 91
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
+ ++ +PD T+ V+ CA + LG+G +H K D +V V N L+ +Y + G
Sbjct: 92 ISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGL 151
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG--VFKTDEVSFTGAL 270
+E A +VF+ M +R LVSWNSII GF+ NGF+ E+ F M G F D + L
Sbjct: 152 VEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVL 211
Query: 271 TACSHAGLIEDGLQYFDIMKKI 292
C+ IE G+ + K+
Sbjct: 212 PVCAGEEDIEKGMAVHGLAVKL 233
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 114/252 (45%), Gaps = 26/252 (10%)
Query: 47 QWTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFPS---------- 95
QW + +S + R+ +A F+ + + P + T ++ CA
Sbjct: 67 QWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGM 126
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
++V V AL+ MY K G ++ A VF+ M R W +++ GF + + +E+
Sbjct: 127 ATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQES 186
Query: 147 LEYFRVMQISGVE---PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
FR M + G E PD T+++VL VCA + G+ +H K + + V N+L
Sbjct: 187 FNAFREMLV-GEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSL 245
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ--KGVFKT 261
+D+YS+ + A+ +F + K+ +VSWNS+I G+A V MQ K
Sbjct: 246 IDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKA 305
Query: 262 DEVSFTGALTAC 273
DE + L C
Sbjct: 306 DEFTILNVLPVC 317
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 109/253 (43%), Gaps = 25/253 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTN---PSHITFVTLLSGCADFP-------- 94
V W S I +G + E+ F M L G P T VT+L CA
Sbjct: 168 VSWNSIICGFSENGFLQESFNAFREM-LVGEESFVPDVATLVTVLPVCAGEEDIEKGMAV 226
Query: 95 ---------SNNVMVSTALLDMYAKFGRMDLATVVFDV--MRGCDFWTALLNGFVKRDYF 143
+ +MV+ +L+DMY+K + A ++FD + W +++ G+ + +
Sbjct: 227 HGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDV 286
Query: 144 EEALEYFRVMQI--SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
+ MQ + ++ D TI++VL VC L +H Y + + N V N
Sbjct: 287 CRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVAN 346
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
+ Y+R G + + +VF M +T+ SWN+++ G+A N +AL+ + M
Sbjct: 347 AFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDP 406
Query: 262 DEVSFTGALTACS 274
D + L ACS
Sbjct: 407 DWFTIGSLLLACS 419
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 146/278 (52%), Gaps = 24/278 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH--ITFVTLLSGCAD----------- 92
V WTS IS G IL + R RL+ P + + ++SG +
Sbjct: 190 VAWTSMIS-----GYILCNRVALAR-RLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLF 243
Query: 93 --FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
P + M +L+ YA G ++ +F+ M R W L+ G+ F E L
Sbjct: 244 DTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLR 303
Query: 149 YFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
F+ M I G V P+ T+++VL+ CA + L +G W+H Y FK ++ V N L+D+Y
Sbjct: 304 CFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMY 363
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
S+ G IE A +VF+ M + L++WNS+I G A +G +AL F+ M+ K D ++F
Sbjct: 364 SKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFI 423
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L +C+H GL+E+G YF+ M Y ++PQIEH+GC+
Sbjct: 424 GVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCM 461
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 29/261 (11%)
Query: 43 DTTVQWTSSISR-HCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
D V+ ++ISR + + E F +M+ P+ TF +L CA +
Sbjct: 85 DPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEE 144
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
N V+T L+D+Y+ + A +F M R WT++++G++ +
Sbjct: 145 IHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNR 204
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
A F + P+ ++ + V + +G + ++D + NT
Sbjct: 205 VALARRLFD------LAPERDVVLWNIMVSGYIE-IGDMKAARKLFDTMPYRDTMS-WNT 256
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKT 261
+++ Y+ G +E Q+F+ M +R + SWN +I G+A NG E L F ++ G+
Sbjct: 257 MLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVP 316
Query: 262 DEVSFTGALTACSHAGLIEDG 282
++ + L+AC+ G ++ G
Sbjct: 317 NDATLVTVLSACARLGALDLG 337
>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 767
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 155/294 (52%), Gaps = 34/294 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTN---PSHITFVTLLSGCADFP-------- 94
V W S IS +G A F M GT+ P+ +T + LL CA+
Sbjct: 234 VSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWV 293
Query: 95 -------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
+ +V+V TALLDM+A+ G + LA +FD + G + W+A++ G+ +
Sbjct: 294 HEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQ 353
Query: 140 RDYFEEALEYFRVMQISG------VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193
EEAL FR M + G V+P+ +T++SV+ C+ + +H+Y
Sbjct: 354 GSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGL 413
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYF 251
+ R+ + L+D+ ++ G IE RQVF M + RT+VSW+S+I ++G ALE F
Sbjct: 414 DQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELF 473
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ M+ G ++ +E+++ L+ACSHAGL+E G F+ M+K Y +SP +H+ C+
Sbjct: 474 SEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACL 527
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 112/251 (44%), Gaps = 40/251 (15%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADF----PSNNVMV-------------STALLDMYAK 110
FTRM+ + ++ TF LL CA P+ V + AL+D Y K
Sbjct: 40 FTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGK 99
Query: 111 FGRMDLATVVFDVMRGCDF----WTALLNGFVKRDYFEEALEYFRVM---------QISG 157
G A VFD M WTAL++ + +EA + F M + G
Sbjct: 100 CGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCG 159
Query: 158 VEPDYLTIISVLNVCA---NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V D +++ ++++ CA L G +H V K F + + N+++ +YS +
Sbjct: 160 V--DVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVG 217
Query: 215 FARQVFQRM--HKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKG--VFKTDEVSFTGA 269
A +VF + +R +VSWNS+I GF +NG AL F +++ +G + + V+
Sbjct: 218 GAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIAL 277
Query: 270 LTACSHAGLIE 280
L +C+ G +E
Sbjct: 278 LKSCAELGCVE 288
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 140/279 (50%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I + ++ EA L F +M G P+ ++ + L CAD
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
NV V +L+ MY K +D A +F + R W A++ GF + +A
Sbjct: 363 SVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDA 422
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L YF M+ V+PD T +SV+ A + W+H V + NV V L+D+
Sbjct: 423 LNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDM 482
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G I AR +F M +R + +WN++I G+ +GF ALE F MQKG K + V+F
Sbjct: 483 YAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTF 542
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++ACSH+GL+E GL+ F +MK+ Y + ++H+G +
Sbjct: 543 LSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAM 581
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 116/241 (48%), Gaps = 20/241 (8%)
Query: 62 LEAALEF-TRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTA 103
L+ AL+F RMR P F LL C D S ++ T
Sbjct: 116 LDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTG 175
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L +MYAK +++ A VFD M D W ++ G+ + ALE + M ++P
Sbjct: 176 LENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPS 235
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
++TI+SVL + +R + +G +H Y + F V + L+D+Y++ G +E ARQ+F
Sbjct: 236 FITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFD 295
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
M +R +VSWNS+I + N EA+ F M K +VS GAL AC+ G +E
Sbjct: 296 GMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLER 355
Query: 282 G 282
G
Sbjct: 356 G 356
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 2/183 (1%)
Query: 102 TALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
T L+ ++ ++G +D A VF+ + + + +L GF K ++AL++F M+ VE
Sbjct: 73 TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
P +L VC + L +G +H + K F ++ L ++Y++ + AR+V
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKV 192
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F RM +R LVSWN+I+ G++ NG ALE M + K ++ L A S LI
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252
Query: 280 EDG 282
G
Sbjct: 253 SVG 255
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 107/215 (49%), Gaps = 22/215 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
T V W + I ++G ++A F++MR P T+V++++ A+
Sbjct: 402 TLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIH 461
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
NV V+TAL+DMYAK G + +A ++FD+M R W A+++G+ + +
Sbjct: 462 GVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGK 521
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN--T 202
ALE F MQ ++P+ +T +SV++ C++ + GL Y+ K+++ + + +
Sbjct: 522 AALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCF-YMMKENYSIELSMDHYGA 580
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
++D+ R G + A +M + V+ ++G
Sbjct: 581 MVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLG 615
>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
Length = 580
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 148/272 (54%), Gaps = 20/272 (7%)
Query: 51 SISRHCRSGCILEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPS-------------- 95
S++R + AAL F R L P S F ++ CAD +
Sbjct: 75 SLTRATARRGLPAAALAFYRCLLAAALPFSSFAFTSVAKACADLSAIRAGMGIHAHAVLL 134
Query: 96 ---NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
+N V T+L+ +Y+K G++D+A +FD +R W A+++G+ + A+E +
Sbjct: 135 GLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYEQNGLAGRAIEVY 194
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R MQ++G PD T ++ L+ CA L +G + + + + + NV + L+++Y+R
Sbjct: 195 REMQMAGEAPDSATFVATLSACAQAGALDLGRQVDKLIVSERMEMNVVLGAALVNMYARC 254
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + AR+ F + +R +V+W S+I G+ ++G GEA++ FNLM++ ++V+F L
Sbjct: 255 GLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQQGPPPNDVTFVAVL 314
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
+AC+HAGL+ +G F MK +Y + P++EH+
Sbjct: 315 SACAHAGLVSEGRDAFASMKSVYGLVPRVEHY 346
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 95/199 (47%), Gaps = 32/199 (16%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V W + IS + ++G A + M++ G P TFV LS CA +
Sbjct: 170 SVVAWNAMISGYEQNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVD 229
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
NV++ AL++MYA+ G ++ A F+++ R WT+++ G+ +
Sbjct: 230 KLIVSERMEMNVVLGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHGG 289
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-------WMHRYVPKQDFKDNV 197
EA++ F +M+ G P+ +T ++VL+ CA+ + G ++ VP+ +
Sbjct: 290 EAVKLFNLMRQQGPPPNDVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVE----- 344
Query: 198 RVCNTLMDVYSRFGCIEFA 216
C +++D+Y R G ++ A
Sbjct: 345 HYC-SMVDMYGRAGLLDDA 362
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 35/154 (22%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD----------FP 94
V WTS I+ + G EA F MR G P+ +TFV +LS CA F
Sbjct: 272 VVTWTSMIAGYGMHGHGGEAVKLFNLMRQQGPPPNDVTFVAVLSACAHAGLVSEGRDAFA 331
Query: 95 SNNVMVS--------TALLDMYAKFGRMDLATVVFDVMR----------GCDFWTALLNG 136
S + +++DMY + G +D D MR G + WTA+L
Sbjct: 332 SMKSVYGLVPRVEHYCSMVDMYGRAGLLD------DAMRFIHDSIPGEPGPEVWTAMLGA 385
Query: 137 FVKRDYFEEALEYF-RVMQISGVEPDYLTIISVL 169
F +E R++ + P + ++S L
Sbjct: 386 CKMHKDFNLGVEVAERLIALEPESPSHRVLLSNL 419
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 130/209 (62%), Gaps = 4/209 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRG---CDFWTALLNGFVKRDYFEEALEYFRVMQIS 156
V T LL++YAK + LA VFD M G W+A++ G+ + EAL FR MQ +
Sbjct: 168 VQTGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAA 227
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
V PD +T++SV++ CA L +G W+H ++ ++ ++ + L+D+Y++ G IE A
Sbjct: 228 DVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERA 287
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
+ VF M +R +W+++IVG A++G V AL+ F+ M + + + V+F G L+AC+H+
Sbjct: 288 KGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHS 347
Query: 277 GLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
GL+ +G +Y+ M+++ + P +E++GC+
Sbjct: 348 GLVNEGRRYWSTMQEL-GIKPSMENYGCM 375
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 19/146 (13%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W++ I + R G + EA F M+ NP +T V+++S CA +
Sbjct: 201 WSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFID 260
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
++ +STAL+DMYAK G ++ A VFD M R W+A++ G E AL+
Sbjct: 261 RKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALK 320
Query: 149 YFRVMQISGVEPDYLTIISVLNVCAN 174
F M V P+ +T I VL+ CA+
Sbjct: 321 LFSRMLELKVRPNNVTFIGVLSACAH 346
>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
Length = 767
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 155/294 (52%), Gaps = 34/294 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTN---PSHITFVTLLSGCADFP-------- 94
V W S IS +G A F M GT+ P+ +T + LL CA+
Sbjct: 234 VSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWV 293
Query: 95 -------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
+ +V+V TALLDM+A+ G + LA +FD + G + W+A++ G+ +
Sbjct: 294 HEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQ 353
Query: 140 RDYFEEALEYFRVMQISG------VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193
EEAL FR M + G V+P+ +T++SV+ C+ + +H+Y
Sbjct: 354 GSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGL 413
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYF 251
+ R+ + L+D+ ++ G IE RQVF M + RT+VSW+S+I ++G ALE F
Sbjct: 414 DQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELF 473
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ M+ G ++ +E+++ L+ACSHAGL+E G F+ M+K Y +SP +H+ C+
Sbjct: 474 SEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACL 527
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 40/251 (15%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADF----PSNNVMV-------------STALLDMYAK 110
FTRM+ + ++ TF LL CA P+ V + AL+D Y K
Sbjct: 40 FTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGK 99
Query: 111 FGRMDLATVVFDVMRGCDF----WTALLNGFVKRDYFEEALEYFRVM---------QISG 157
G A VFD M WTAL++ + +EA F M + G
Sbjct: 100 CGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCG 159
Query: 158 VEPDYLTIISVLNVCA---NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V D +++ ++++ CA L G +H V K F + + N+++ +YS +
Sbjct: 160 V--DVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVG 217
Query: 215 FARQVFQRM--HKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKG--VFKTDEVSFTGA 269
A +VF + +R +VSWNS+I GF +NG AL F +++ +G + + V+
Sbjct: 218 GAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIAL 277
Query: 270 LTACSHAGLIE 280
L +C+ G +E
Sbjct: 278 LKSCAELGCVE 288
>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 736
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 144/281 (51%), Gaps = 20/281 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
++ W++ I+ + ++G AA F +M G P+ TFV +L+ C+D +
Sbjct: 291 SITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHC 350
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD---FWTALLNGFVKRDYFE 144
V V +AL+DMYAK G + A F + D WTA++ G V+ E
Sbjct: 351 LMVKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGEHE 410
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL + M G+ P YLT+ SVL CA + L +G +H + K F V L
Sbjct: 411 EALMLYSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQLHAQILKCRFSLGGSVGTALS 470
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+YS+ G +E + VF+RM R ++SWNSII F+ +G +AL+ F M+ D +
Sbjct: 471 TMYSKCGNLEDSMVVFRRMPDRDVISWNSIISVFSQHGRGSDALDMFEEMKLEGTAPDHI 530
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F L+ACSH GL++ G YF M K Y + P ++H+ C+
Sbjct: 531 TFINLLSACSHMGLVDRGWFYFRAMTKDYNLIPTLDHYACM 571
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 109/217 (50%), Gaps = 6/217 (2%)
Query: 79 SHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNG 136
+H L S C SNNV VSTALL+MY K G + A VFD M R W A+++G
Sbjct: 142 THALACKLPSSCG---SNNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSG 198
Query: 137 FVKRDYFEEALEYFRVM-QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195
+ EEA E FR+M Q +E + +VL+ + L +G +H V K
Sbjct: 199 YATGKCSEEAFELFRLMLQKCPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVG 258
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
V V N+L+ +Y++ C++ A +VF +R ++W+++I G+A NG A F M
Sbjct: 259 FVSVENSLVTMYAKAECMDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMH 318
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
F E +F G L ACS G + G Q +M K+
Sbjct: 319 SSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKL 355
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 33/237 (13%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV--- 98
+D V WT+ I+ H ++G EA + ++RM G PS++T ++L CA + ++
Sbjct: 390 VDDVVLWTAMITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQ 449
Query: 99 --------------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
V TAL MY+K G ++ + VVF M D W ++++ F +
Sbjct: 450 LHAQILKCRFSLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDVISWNSIISVFSQHGR 509
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCN 201
+AL+ F M++ G PD++T I++L+ C+++ + G + R + K + +
Sbjct: 510 GSDALDMFEEMKLEGTAPDHITFINLLSACSHMGLVDRGWFYFRAMTKDYNLIPTLDHYA 569
Query: 202 TLMDVYSRFGCIEFARQVFQRM---HKRTLVSWNSIIVG-------FAVNGFVGEAL 248
++D+ SR G ++ A+ + H L W I++G F V + GE L
Sbjct: 570 CMVDILSRAGQLKEAKDFIDSITIDHGTCL--WR-IVLGACRSLRDFDVGAYAGEQL 623
>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
Length = 799
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 126/211 (59%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+ V++ ++DMY K G +D A + D + G W A+L+GF E A ++F M
Sbjct: 422 DAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEAAQKFFSEML 481
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
G++PD+ T +VL+ CAN+ T+ +G +H + KQ+ D+ + +TL+D+Y++ G +
Sbjct: 482 DMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMP 541
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
+ VF+++ KR VSWN++I G+A++G EAL F MQK + +F L ACS
Sbjct: 542 DSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACS 601
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H GL +DG +YF +M Y++ PQ+EH C+
Sbjct: 602 HVGLFDDGCRYFHLMTTHYKLEPQLEHFACM 632
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 2/193 (1%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P + + +L Y+ G + A +FD M D W AL++G+ +R F+E+++ F
Sbjct: 79 PRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFV 138
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M GV PD T +L C+ + L +G+ +H K + +VR + L+D+Y +
Sbjct: 139 EMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCR 198
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ A F M +R VSW S I G N LE F MQ+ + S+ A
Sbjct: 199 SLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 258
Query: 272 ACSHAGLIEDGLQ 284
+C+ + G Q
Sbjct: 259 SCAAMSCLNTGRQ 271
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 101/249 (40%), Gaps = 33/249 (13%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + +S +C+ G E+ F M G +P TF LL C+
Sbjct: 115 VSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHAL 174
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+V +AL+DMY K +D A F M R W + + G V+ + +
Sbjct: 175 AVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRG 234
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F MQ G+ + S CA + L G +H + K F + V ++DV
Sbjct: 235 LELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDV 294
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ + AR+ F + T+ + N+++VG M + + D VS
Sbjct: 295 YAKANSLTDARRAFFGLPNHTVETSNAMMVGL--------------FMIRSSIRFDVVSL 340
Query: 267 TGALTACSH 275
+G +AC+
Sbjct: 341 SGVFSACAE 349
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 20/133 (15%)
Query: 63 EAALEF-TRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTAL 104
EAA +F + M G P H TF T+L CA+ + ++ +S+ L
Sbjct: 471 EAAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTL 530
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+DMYAK G M + +VF+ + DF W A++ G+ EAL F MQ V P++
Sbjct: 531 VDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNH 590
Query: 163 LTIISVLNVCANV 175
T ++VL C++V
Sbjct: 591 ATFVAVLRACSHV 603
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 56/234 (23%)
Query: 46 VQWTSSISRHCRSGCI--------LEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--- 94
V W S+I+ GC+ LE +E R+ L + PS + + CA
Sbjct: 216 VSWGSAIA-----GCVQNEQYVRGLELFIEMQRLGLGVSQPS---YASAFRSCAAMSCLN 267
Query: 95 --------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKR 140
S++ +V TA++D+YAK A + D R + L N V+
Sbjct: 268 TGRQLHAHAIKNKFSSDRVVGTAIVDVYAK------ANSLTDARRA---FFGLPNHTVET 318
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
A+ M S + D +++ V + CA + Y P Q +
Sbjct: 319 ---SNAMMVGLFMIRSSIRFDVVSLSGVFSACAETKG---------YFPGQQV--HCLAI 364
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+++D+Y + + A +FQ M ++ VSWN+II NG + + +FN M
Sbjct: 365 KSVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM 418
>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
Length = 597
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
+TV WT+ I+ + +G LEA G P T V +L+ CA
Sbjct: 141 STVSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVADLVTGEEVW 200
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ NV V+TA +D+Y K G MD A VFD M+ D W A++ G+ +
Sbjct: 201 TAAEKEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVGGYASNGHPR 260
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EALE F MQ+ G+ PD T+ L+ C + L +G + + + N + L+
Sbjct: 261 EALELFFAMQVEGMRPDCYTVAGALSACTRLGALDLGRRVVGMLQWDEVLGNPVLGTALI 320
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G A VFQ+M R ++ WN++I+G + G A M+K ++
Sbjct: 321 DMYAKCGSTGEAWMVFQKMRNRDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGMTLNDN 380
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L +C+H GL++DG +YF M ++Y + P+IEH+G +
Sbjct: 381 TFIGLLCSCTHTGLVKDGRRYFRNMTQLYHIRPRIEHYGIM 421
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 116/246 (47%), Gaps = 21/246 (8%)
Query: 66 LEFTRMRLYGTNPSHITFVTLLSGCADFPS------------------NNVMVSTALLDM 107
L R + NPSH+TF + + P +N V T+LL++
Sbjct: 60 LHVLRFHSHLPNPSHLTFPFAIKSASRLPDPLTAGAQLHARSLKLPSHSNPHVLTSLLNL 119
Query: 108 YAKFGRMDLATVVFDVMR---GCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
YA+ GR+ A FD MR WTAL+ ++ EA+ R SGV PD T
Sbjct: 120 YARCGRLHDAQKAFDEMRQPPSTVSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFT 179
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
+ VL CA V L G + K+ NV V +D+Y + G ++ AR VF +M
Sbjct: 180 AVRVLTACARVADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMK 239
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ +V+W +++ G+A NG EALE F MQ + D + GAL+AC+ G ++ G +
Sbjct: 240 NKDVVAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTRLGALDLGRR 299
Query: 285 YFDIMK 290
+++
Sbjct: 300 VVGMLQ 305
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 146/278 (52%), Gaps = 24/278 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH--ITFVTLLSGCAD----------- 92
V WTS IS G IL + R RL+ P + + ++SG +
Sbjct: 232 VAWTSMIS-----GYILCNRVALAR-RLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLF 285
Query: 93 --FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
P + M +L+ YA G ++ +F+ M R W L+ G+ F E L
Sbjct: 286 DTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLR 345
Query: 149 YFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
F+ M I G V P+ T+++VL+ CA + L +G W+H Y FK ++ V N L+D+Y
Sbjct: 346 CFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMY 405
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
S+ G IE A +VF+ M + L++WNS+I G A +G +AL F+ M+ K D ++F
Sbjct: 406 SKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFI 465
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L +C+H GL+E+G YF+ M Y ++PQIEH+GC+
Sbjct: 466 GVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCM 503
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 29/261 (11%)
Query: 43 DTTVQWTSSISR-HCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
D V+ ++ISR + + E F +M+ P+ TF +L CA +
Sbjct: 127 DPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEE 186
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
N V+T L+D+Y+ + A +F M R WT++++G++ +
Sbjct: 187 IHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNR 246
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
A F + P+ ++ + V + +G + ++D + NT
Sbjct: 247 VALARRLFD------LAPERDVVLWNIMVSGYIE-IGDMKAARKLFDTMPYRDTMS-WNT 298
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKT 261
+++ Y+ G +E Q+F+ M +R + SWN +I G+A NG E L F ++ G+
Sbjct: 299 MLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVP 358
Query: 262 DEVSFTGALTACSHAGLIEDG 282
++ + L+AC+ G ++ G
Sbjct: 359 NDATLVTVLSACARLGALDLG 379
>gi|357446587|ref|XP_003593569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482617|gb|AES63820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 528
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 151/282 (53%), Gaps = 25/282 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WTS IS + G EA F+ + + P+ +T V+ +S C+ +
Sbjct: 125 VSWTSLISGLSKCGFETEAIEAFSSINV---KPNALTLVSAISACSSIGAIKFGKAIHAY 181
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N++ A LD+YAK G A VF M D WT LL + + E
Sbjct: 182 GLKSLMIDGNIVFYNAALDLYAKCGFFSNARNVFVKMSKRDVISWTTLLMAYARGGQCGE 241
Query: 146 ALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTL 203
A+E F+ M +SG EP+ T+++VL+ CA++ +L +G W+H Y+ K+ D + + N L
Sbjct: 242 AVEVFKQMIVSGEAEPNESTVVTVLSACASIGSLSLGCWVHDYIEKRIDLDVDGNIGNAL 301
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+++Y + G ++ +VF + + ++SW ++I G A+NG+ + ++ F+ M D+
Sbjct: 302 VNMYVKCGDMKMGLKVFNMVVHKDVISWGTVICGLAMNGYGKQVVQMFSHMLVHGVLPDD 361
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F G L+ACSH GL+ +G+ +F M+ Y + PQ+ H+GC+
Sbjct: 362 VTFIGLLSACSHVGLVSEGMMFFKAMRDSYGIVPQMSHYGCM 403
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
++ T L C + GL +H + K + + NTL+ Y + A +VF
Sbjct: 57 NHYTFTHALKACCSYHAHAKGLEIHARLIKSGHIFDGFIKNTLLYFYLSSNDVVSATRVF 116
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
+ + +VSW S+I G + GF EA+E F+ + K + ++ A++ACS G I+
Sbjct: 117 KSIPSPDVVSWTSLISGLSKCGFETEAIEAFSSIN---VKPNALTLVSAISACSSIGAIK 173
Query: 281 DG 282
G
Sbjct: 174 FG 175
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 158/337 (46%), Gaps = 57/337 (16%)
Query: 26 KKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVT 85
K R S Q + V W S I+ + ++G +A F RM G P IT +
Sbjct: 198 KCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLAS 257
Query: 86 LLSGCADFPS------------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--- 124
+ S CA + N++++ AL+DMYAK R++ A +VFD M
Sbjct: 258 VASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317
Query: 125 ------------------------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
R W AL+ G+ + EEA+ F +++
Sbjct: 318 DVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLK 377
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF------KDNVRVCNTLMDVYS 208
+ P + T ++LN CAN+ L +G H ++ K F ++ V N+L+D+Y
Sbjct: 378 RESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYM 437
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G +E R VF+RM +R VSWN++IVG+A NG+ EALE F M + D V+ G
Sbjct: 438 KCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIG 497
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSHAGL+E+G YF M + + P +H+ C+
Sbjct: 498 VLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCM 534
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 2/185 (1%)
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
A+L KFG +D A +F M D W A+++GF +RD FEEAL + M
Sbjct: 89 NAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFV 148
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
+ + S L+ CA + L IG+ +H + K + +V + + L+D+YS+ + A++
Sbjct: 149 LNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRA 208
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F M R +VSWNS+I + NG G+ALE F M + DE++ +AC+ I
Sbjct: 209 FDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAI 268
Query: 280 EDGLQ 284
+GLQ
Sbjct: 269 REGLQ 273
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 110/201 (54%), Gaps = 9/201 (4%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
S +V + +AL+DMY+K + A FD M R W +L+ + + +ALE F
Sbjct: 183 SLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVR 242
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDNVRVCNTLMDVYSRFG 211
M G+EPD +T+ SV + CA++ + GL +H V K D +++++ + N L+D+Y++
Sbjct: 243 MMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCR 302
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA-LEYFNLMQKGVFKTDEVSFTGAL 270
+ AR VF RM R +VS S++ G+A V A L + N+M++ V VS+ +
Sbjct: 303 RVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNV-----VSWNALI 357
Query: 271 TACSHAGLIEDGLQYFDIMKK 291
+ G E+ ++ F ++K+
Sbjct: 358 AGYTQNGENEEAVRLFLLLKR 378
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 113/255 (44%), Gaps = 45/255 (17%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
V W + I+ + ++G EA F ++ P+H TF LL+ CA+
Sbjct: 349 NVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAH 408
Query: 95 --------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFV 138
+++ V +L+DMY K G ++ +VF+ M D W A++ G+
Sbjct: 409 THILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYA 468
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-------LWMHRYVPKQ 191
+ Y EALE FR M +SG PD++T+I VL+ C++ + G H VP +
Sbjct: 469 QNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVK 528
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNG------FV 244
D ++D+ R GC++ A + Q M + V W S++ V+G +V
Sbjct: 529 DHY------TCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYV 582
Query: 245 GEALEYFNLMQKGVF 259
E L + + G +
Sbjct: 583 AERLLEIDPLNSGPY 597
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
+L+ C +++ +H + K F + + N L+DVY + G +E AR+VF M +R
Sbjct: 25 LLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRN 84
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
SWN+++ G + EAL F M + D+ S+ ++ + E+ L++
Sbjct: 85 TFSWNAVLGALTKFGALDEALNLFKCMP----ERDQCSWNAMVSGFAQRDRFEEALRF 138
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 130/211 (61%), Gaps = 7/211 (3%)
Query: 99 MVST--ALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQ 154
M+ST A++ +++ G +++A FD M+ D W+A+++G+++ F EALE F MQ
Sbjct: 236 MISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQ 295
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ P + SVL+ CAN+ L G W+H Y + + + + +L+D+Y++ G I+
Sbjct: 296 KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRID 355
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +VF++M + + SWN++I G A++G +A++ F+ M +E++F G L AC+
Sbjct: 356 LAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNEITFVGVLNACA 412
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H GL++ GL F+ M+K Y V PQIEH+GCI
Sbjct: 413 HGGLVQKGLTIFNSMRKEYGVEPQIEHYGCI 443
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 24/211 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ W++ I + + GC +EA F +M+ P ++LS CA+ +
Sbjct: 269 ISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTY 328
Query: 96 ---NNV----MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N++ ++ T+L+DMYAK GR+DLA VF+ M + W A++ G E+A
Sbjct: 329 AKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDA 388
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLMD 205
++ F M I P+ +T + VLN CA+ + GL + + K+ + + ++D
Sbjct: 389 IDLFSKMDIY---PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVD 445
Query: 206 VYSRFGCIEFARQVFQRMHKR-TLVSWNSII 235
+ R G + A +V + T W +++
Sbjct: 446 LLGRAGLLTEAEKVVSSIPTEPTPAVWGALL 476
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 93/207 (44%), Gaps = 39/207 (18%)
Query: 120 VFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
VFD +R + W ++ ++ + +A+ + M ++ P+ T +VL C++
Sbjct: 94 VFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGV 153
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC------------------------- 212
+ G+ +H ++ K + + ++ + +Y+ FG
Sbjct: 154 VAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMID 213
Query: 213 -------IEFARQVFQRMHKRTLVS-WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+E AR++F+ M R+++S WN++I GF+ G V A E+F+ M+ + DE+
Sbjct: 214 GYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMK----ERDEI 269
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKK 291
S++ + G + L+ F M+K
Sbjct: 270 SWSAMIDGYIQEGCFMEALEIFHQMQK 296
>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g09040, mitochondrial; Flags: Precursor
gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1028
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 142/265 (53%), Gaps = 22/265 (8%)
Query: 63 EAALEFTRMRLYGTNPSHITFVTLLSGCAD------------------FPSNNVMVSTAL 104
EA + F M G NPS ITF T++ C F S + +L
Sbjct: 612 EAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISL 671
Query: 105 LDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L MY M A +F + + WT +++G + ++EEAL++++ M+ GV PD
Sbjct: 672 LGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPD 731
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
T ++VL VC+ + +L G +H + + NTL+D+Y++ G ++ + QVF
Sbjct: 732 QATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFD 791
Query: 222 RMHKRT-LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
M +R+ +VSWNS+I G+A NG+ +AL+ F+ M++ DE++F G LTACSHAG +
Sbjct: 792 EMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVS 851
Query: 281 DGLQYFDIMKKIYRVSPQIEHHGCI 305
DG + F++M Y + +++H C+
Sbjct: 852 DGRKIFEMMIGQYGIEARVDHVACM 876
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 125/249 (50%), Gaps = 20/249 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
TV WT S + ++G EA L F RMR G P H+ FVT++
Sbjct: 226 TVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVI----------------- 268
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+ Y + G++ A ++F M D W +++G KR A+EYF M+ S V+
Sbjct: 269 -NTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTR 327
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T+ SVL+ V L +GL +H K N+ V ++L+ +YS+ +E A +VF+
Sbjct: 328 STLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEA 387
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ ++ V WN++I G+A NG + +E F M+ + D+ +FT L+ C+ + +E G
Sbjct: 388 LEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMG 447
Query: 283 LQYFDIMKK 291
Q+ I+ K
Sbjct: 448 SQFHSIIIK 456
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 117/258 (45%), Gaps = 19/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W IS H + GC A F MR + T ++LS
Sbjct: 293 VAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAE 352
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
++N+ V ++L+ MY+K +M+ A VF+ + + FW A++ G+ +
Sbjct: 353 AIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKV 412
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+E F M+ SG D T S+L+ CA L +G H + K+ N+ V N L+D+
Sbjct: 413 MELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDM 472
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G +E ARQ+F+RM R V+WN+II + + EA + F M +D
Sbjct: 473 YAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACL 532
Query: 267 TGALTACSHAGLIEDGLQ 284
L AC+H + G Q
Sbjct: 533 ASTLKACTHVHGLYQGKQ 550
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 123/261 (47%), Gaps = 24/261 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---------DFPS- 95
V W + I + +G + F M+ G N TF +LLS CA F S
Sbjct: 394 VFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSI 453
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYFE 144
N+ V AL+DMYAK G ++ A +F+ M CD W ++ +V+ +
Sbjct: 454 IIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERM--CDRDNVTWNTIIGSYVQDENES 511
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA + F+ M + G+ D + S L C +V L G +H K ++ ++L+
Sbjct: 512 EAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLI 571
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+YS+ G I+ AR+VF + + ++VS N++I G++ N + + ++ +GV E+
Sbjct: 572 DMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNLEEAVVLFQEMLTRGV-NPSEI 630
Query: 265 SFTGALTACSHAGLIEDGLQY 285
+F + AC + G Q+
Sbjct: 631 TFATIVEACHKPESLTLGTQF 651
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 22/225 (9%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---- 95
S+ + V WT +S H ++G EA + MR G P TFVT+L C+ S
Sbjct: 692 SSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREG 751
Query: 96 -------------NNVMVSTALLDMYAKFGRMDLATVVFDVMR---GCDFWTALLNGFVK 139
+ + S L+DMYAK G M ++ VFD MR W +L+NG+ K
Sbjct: 752 RAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAK 811
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVR 198
Y E+AL+ F M+ S + PD +T + VL C++ + G + + Q + V
Sbjct: 812 NGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVD 871
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
++D+ R+G ++ A + + K W+S++ ++G
Sbjct: 872 HVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHG 916
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 107/261 (40%), Gaps = 28/261 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + I + + EA F RM L G + L C
Sbjct: 495 VTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCL 554
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT-----ALLNGFVKRDYF 143
++ ++L+DMY+K G + A VF + W+ AL+ G+ + +
Sbjct: 555 SVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPE---WSVVSMNALIAGYSQNN-L 610
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN-T 202
EEA+ F+ M GV P +T +++ C +L +G H + K+ F +
Sbjct: 611 EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGIS 670
Query: 203 LMDVYSRFGCIEFARQVFQRMHK-RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+ +Y + A +F + +++V W ++ G + NGF EAL+++ M+
Sbjct: 671 LLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLP 730
Query: 262 DEVSFTGALTACSHAGLIEDG 282
D+ +F L CS + +G
Sbjct: 731 DQATFVTVLRVCSVLSSLREG 751
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 1/191 (0%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM-RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
+ A++D+YAK ++ A FD + + W ++L+ + + L F + + +
Sbjct: 97 LGNAIVDLYAKCAQVSYAEKQFDFLEKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQI 156
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
P+ T VL+ CA + G +H + K + N L+D+Y++ I AR+
Sbjct: 157 FPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARR 216
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF+ + V W + G+ G EA+ F M+ + D ++F + G
Sbjct: 217 VFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGK 276
Query: 279 IEDGLQYFDIM 289
++D F M
Sbjct: 277 LKDARLLFGEM 287
>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
Length = 714
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 150/280 (53%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRL-YGTNPSHITFVTLLSGCADFP---------- 94
V W S +S G + F RMR G P+ +T ++++S CA
Sbjct: 206 VSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHG 265
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
S V +L++MY K G +D A+ +F+ M R W +++ Y E+
Sbjct: 266 VVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEK 325
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
++ F +M+ +G+ PD T++++L C + +H Y+ + F ++ + L++
Sbjct: 326 GMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLN 385
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + + +F+ + R ++W +++ G+AV+ EA++ F+LM K + D V+
Sbjct: 386 LYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 445
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
FT L+ACSH+GL+E+G +YF+IM ++YRV P+++H+ C+
Sbjct: 446 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCM 485
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 32/208 (15%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
+ + V W S + H +G + F M+ G NP T V LL C D
Sbjct: 304 VRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAES 363
Query: 95 ----------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDY 142
+ +++++TALL++YAK GR++ + +F+ ++ D WTA+L G+
Sbjct: 364 IHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHAC 423
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANV-------RTLGIGLWMHRYVPKQDFKD 195
EA++ F +M GVE D++T +L+ C++ + I ++R P+ D
Sbjct: 424 GREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY- 482
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRM 223
+ ++D+ R G +E A ++ + M
Sbjct: 483 -----SCMVDLLGRSGRLEDAYELIKSM 505
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
R + ++ D + + L+ +Y + G E A+++F M R LVSWNS++ G + G++G
Sbjct: 164 RVIKSLNYSDGF-IGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLG 222
Query: 246 EALEYFNLMQ-KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
L F M+ + + +EV+ ++AC+ G +++G ++ K+
Sbjct: 223 ACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKL 270
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 15/184 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
T+ WT+ ++ + C EA F M G H+TF LLS C+ + L
Sbjct: 408 TIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSH---------SGL 458
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
++ K+ ++ + V+ V D ++ +++ + E+A E + M + EP
Sbjct: 459 VEEGKKY--FEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPM---EPSSGV 513
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
++L C + +G + + D D+ R L ++YS G A +V M
Sbjct: 514 WGALLGACRVYGNVELGKEVAEQLLSLDPSDH-RNYIMLSNIYSAAGLWRXASKVRXLMK 572
Query: 225 KRTL 228
+R L
Sbjct: 573 ERRL 576
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 143/257 (55%), Gaps = 19/257 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCA-----------------DFPSNNVMVSTALLDMYAK 110
F M G P+ TF+++L C+ + +N V TAL+DMYAK
Sbjct: 504 FYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAK 563
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
++ A V F+ + D WT ++ + + + E+AL YFR MQ GV+P+ T+
Sbjct: 564 CMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGC 623
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ C+++ +L G +H V K ++ V + L+D+Y++ GC+E A +F+ + +R
Sbjct: 624 LSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDT 683
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
++WN+II G+A NG +AL F +M D V+FTG L+ACSH GL+E+G ++F+
Sbjct: 684 IAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNS 743
Query: 289 MKKIYRVSPQIEHHGCI 305
M + + +SP ++H C+
Sbjct: 744 MYRDFGISPTVDHCACM 760
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 109/248 (43%), Gaps = 19/248 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W ++ + + G + F M + T T+L GCA+ +
Sbjct: 280 VTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSL 339
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
N + L+DMY+K G A VF ++ D W+AL+ ++ EE+
Sbjct: 340 IIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEES 399
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
++ F +M++ P+ TI S+L+ N L G +H V K F+ +V V N L+ +
Sbjct: 400 IKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTM 459
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + GC+ ++++ M R L+SWN+ + G G L F M + F + +F
Sbjct: 460 YMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTF 519
Query: 267 TGALTACS 274
L +CS
Sbjct: 520 ISILGSCS 527
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 120/256 (46%), Gaps = 19/256 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-----DFPSN---- 96
V WT+ I G ++ F M+ G P+ T T L C+ D
Sbjct: 179 VSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQ 238
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
++ V +AL+D+YAK G ++LA+ +F M + W LLNG+ +R
Sbjct: 239 AFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGV 298
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F M V+ + T+ +VL CAN + L G +H + K ++ N + L+D+
Sbjct: 299 LKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDM 358
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
YS+ G A VF+ + K +V W+++I G E+++ F+LM+ G ++ +
Sbjct: 359 YSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTI 418
Query: 267 TGALTACSHAGLIEDG 282
L+A ++ G ++ G
Sbjct: 419 CSLLSAATNTGNLQYG 434
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 4/191 (2%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P +++ VS L+++YAK A +V M D WTAL+ G V + +++ F+
Sbjct: 145 PDSHLWVS--LVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQ 202
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
MQ G+ P+ T+ + L C+ L +G MH K ++ V + L+D+Y++ G
Sbjct: 203 EMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCG 262
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
IE A ++F M ++ V+WN ++ G+A G V L+ F M + K +E + T L
Sbjct: 263 EIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLK 322
Query: 272 ACSHAGLIEDG 282
C+++ ++ G
Sbjct: 323 GCANSKNLKQG 333
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 1/160 (0%)
Query: 126 GCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS-VLNVCANVRTLGIGLWM 184
GC+F + N + ++ + E + Q+ L S +L CA+ R+LG+ +
Sbjct: 75 GCEFKNVVHNFPYRFNFEHQKTEDAKGNQVCWSSKKKLKYYSSMLRECASKRSLGVAKAI 134
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
H + K + + +L++VY++ +AR V +M R +VSW ++I G GF
Sbjct: 135 HGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFA 194
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+++ F MQ +E + L ACS ++ G Q
Sbjct: 195 NDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 143/257 (55%), Gaps = 19/257 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCA-----------------DFPSNNVMVSTALLDMYAK 110
F M G P+ TF+++L C+ + +N V TAL+DMYAK
Sbjct: 504 FYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAK 563
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
++ A V F+ + D WT ++ + + + E+AL YFR MQ GV+P+ T+
Sbjct: 564 CMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGC 623
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ C+++ +L G +H V K ++ V + L+D+Y++ GC+E A +F+ + +R
Sbjct: 624 LSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDT 683
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
++WN+II G+A NG +AL F +M D V+FTG L+ACSH GL+E+G ++F+
Sbjct: 684 IAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNS 743
Query: 289 MKKIYRVSPQIEHHGCI 305
M + + +SP ++H C+
Sbjct: 744 MYRDFGISPTVDHCACM 760
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 109/248 (43%), Gaps = 19/248 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W ++ + + G + F M + T T+L GCA+ +
Sbjct: 280 VTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSL 339
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
N + L+DMY+K G A VF ++ D W+AL+ ++ EE+
Sbjct: 340 IIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEES 399
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
++ F +M++ P+ TI S+L+ N L G +H V K F+ +V V N L+ +
Sbjct: 400 IKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTM 459
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + GC+ ++++ M R L+SWN+ + G G L F M + F + +F
Sbjct: 460 YMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTF 519
Query: 267 TGALTACS 274
L +CS
Sbjct: 520 ISILGSCS 527
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 120/256 (46%), Gaps = 19/256 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-----DFPSN---- 96
V WT+ I G ++ F M+ G P+ T T L C+ D
Sbjct: 179 VSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQ 238
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
++ V +AL+D+YAK G ++LA+ +F M + W LLNG+ +R
Sbjct: 239 AFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGV 298
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F M V+ + T+ +VL CAN + L G +H + K ++ N + L+D+
Sbjct: 299 LKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDM 358
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
YS+ G A VF+ + K +V W+++I G E+++ F+LM+ G ++ +
Sbjct: 359 YSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTI 418
Query: 267 TGALTACSHAGLIEDG 282
L+A ++ G ++ G
Sbjct: 419 CSLLSAATNTGNLQYG 434
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 4/191 (2%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P +++ VS L+++YAK A +V M D WTAL+ G V + +++ F+
Sbjct: 145 PDSHLWVS--LVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQ 202
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
MQ G+ P+ T+ + L C+ L +G MH K ++ V + L+D+Y++ G
Sbjct: 203 EMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCG 262
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
IE A ++F M ++ V+WN ++ G+A G V L+ F M + K +E + T L
Sbjct: 263 EIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLK 322
Query: 272 ACSHAGLIEDG 282
C+++ ++ G
Sbjct: 323 GCANSKNLKQG 333
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 1/160 (0%)
Query: 126 GCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS-VLNVCANVRTLGIGLWM 184
GC+F + N + ++ + E + Q+ L S +L CA+ R+LG+ +
Sbjct: 75 GCEFKNVVHNFPYRFNFEHQKTEDAKGNQVCWSSKKKLKYYSSMLRECASKRSLGVAKAI 134
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
H + K + + +L++VY++ +AR V +M R +VSW ++I G GF
Sbjct: 135 HGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFA 194
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+++ F MQ +E + L ACS ++ G Q
Sbjct: 195 NDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 156/300 (52%), Gaps = 19/300 (6%)
Query: 25 LKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFV 84
+K R +S + K + + W + +S +C+ + F RM+ P T
Sbjct: 361 IKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLA 420
Query: 85 TLLSGCADFP-----------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGC 127
+LS C+ N++ V++ L+DMY+K G++ +A ++F+ M
Sbjct: 421 VILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTER 480
Query: 128 DF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185
D W ++++G EEA ++F+ M+ +G+ P + S++N CA + ++ G +H
Sbjct: 481 DVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIH 540
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
+ K + NV V + L+D+Y++ G ++ AR F M + +V+WN +I G+A NGF
Sbjct: 541 AQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGE 600
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+A++ F M + D V+F LT CSH+GL+++ + +F+ M+ Y ++P EH+ C+
Sbjct: 601 KAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEAIAFFNSMESTYGITPLAEHYTCL 660
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 130/278 (46%), Gaps = 30/278 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + I+ RS EA + M G P+H T ++LS C +
Sbjct: 106 VSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRCHGL 165
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
N+ V ALL MY K G ++ A +FD M + +TA++ G V+ ++A
Sbjct: 166 AVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDA 225
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCAN--------VRTLGIGLWMHRYVPKQDFKDNVR 198
L F M SGV D + + SVL CA VR +G +H + ++ F +
Sbjct: 226 LRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQH 285
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V N+L+D+Y++ ++ A +VF + + VSWN +I GF G +ALE NLM++
Sbjct: 286 VGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESG 345
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
+ +EV+++ L +C A + FD KI R S
Sbjct: 346 SEPNEVTYSNMLASCIKARDVLSARAMFD---KISRPS 380
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 17/251 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
+TV W I+ ++G +A M G+ P+ +T+ +L+ C + +V+ + A
Sbjct: 314 STVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASC--IKARDVLSARA 371
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
+ D K R + T W LL+G+ + + ++ +E FR MQ V+PD
Sbjct: 372 MFD---KISRPSVTT-----------WNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRT 417
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T+ +L+ C+ + L +G +H + +++ V + L+D+YS+ G I AR +F RM
Sbjct: 418 TLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRM 477
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
+R +V WNS+I G A++ EA ++F M+ E S+ + +C+ + G
Sbjct: 478 TERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGR 537
Query: 284 Q-YFDIMKKIY 293
Q + I+K Y
Sbjct: 538 QIHAQIVKDGY 548
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 7/200 (3%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P N A L + G +D A + D M R W ++ + + EALE +
Sbjct: 69 LPRPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELY 128
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M G+ P + T+ SVL+ C V L G H K +N+ V N L+ +Y++
Sbjct: 129 EGMLREGLVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKC 188
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G +E A ++F M VS+ +++ G G V +AL F M + + D V+ + L
Sbjct: 189 GGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVL 248
Query: 271 TACSHAGLIEDGLQYFDIMK 290
+C+ A E FD+++
Sbjct: 249 GSCAQACASE-----FDVVR 263
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLMQKGVF 259
N + R G ++ AR + M R +VSWN++I A + GEALE Y ++++G+
Sbjct: 78 NAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLV 137
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
T + L+AC ++DG + + K+
Sbjct: 138 PT-HFTLASVLSACGAVAALDDGRRCHGLAVKV 169
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 146/281 (51%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
T V W S IS + G + F RM G P+ T +L+ C+
Sbjct: 272 TVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVH 331
Query: 92 -----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ ++V ++++L+D+Y K G+++LA +F ++ W +++G+V
Sbjct: 332 GYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLF 391
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL F M+ S VEPD +T SVL C+ + L G +H + ++ +N V L+
Sbjct: 392 EALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALL 451
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G ++ A VF+ + KR LVSW S+I + +G ALE F M + K D V
Sbjct: 452 DMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRV 511
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F L+AC HAGL+++G YF+ M +Y + P++EH+ C+
Sbjct: 512 TFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCL 552
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 135/261 (51%), Gaps = 19/261 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN---------- 97
W + IS + +SG EA F MR +G P+ +T T +S CA N
Sbjct: 175 WNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELI 234
Query: 98 -------VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
+S+AL+DMY K G +++A VF+ M + W ++++G+ + ++
Sbjct: 235 NSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQ 294
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F+ M GV+P T+ S++ VC+ L G ++H Y + + +V + ++LMD+Y
Sbjct: 295 LFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYF 354
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G +E A +F+ + K +VSWN +I G+ G + EAL F+ M+K + D ++FT
Sbjct: 355 KCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTS 414
Query: 269 ALTACSHAGLIEDGLQYFDIM 289
LTACS +E G + +++
Sbjct: 415 VLTACSQLAALEKGEEIHNLI 435
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 104/188 (55%), Gaps = 2/188 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+++V ++L+ MYAK + A +F+ M D W +++ + + F+EALEYF +M+
Sbjct: 140 DIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMR 199
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
G EP+ +TI + ++ CA + L G+ +H + F + + + L+D+Y + G +E
Sbjct: 200 RFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLE 259
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +VF++M K+T+V+WNS+I G+ + G ++ F M K + + + CS
Sbjct: 260 MAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCS 319
Query: 275 HAGLIEDG 282
+ + +G
Sbjct: 320 RSARLLEG 327
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 101/193 (52%), Gaps = 4/193 (2%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-CD--FWTALLNGFVKRDYFEEALEYF-R 151
N++ + L+++Y D A VFD M C+ W L+ G+ K + EALE F +
Sbjct: 36 NDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEK 95
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
++ ++PD T SVL C + +G +H + K ++ V ++L+ +Y++
Sbjct: 96 LLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCN 155
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
E A +F M ++ + WN++I + +G EALEYF LM++ F+ + V+ T A++
Sbjct: 156 AFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAIS 215
Query: 272 ACSHAGLIEDGLQ 284
+C+ + G++
Sbjct: 216 SCARLLDLNRGME 228
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 142/276 (51%), Gaps = 21/276 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCAD------------ 92
V W S I + R G I E ALE F M ++ L+ G +
Sbjct: 181 VSWNSLIDGYARCGEI-ELALEMFEEM----PEKDSFSWTILIDGLSKSGKLEAARDVFD 235
Query: 93 -FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
P N + A+++ Y K G + A +FD M R W +++ G+ + F +AL+
Sbjct: 236 RMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKL 295
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F VM + P+Y TI+ ++ + + +LG G W+H Y+ K FK + + L+++YS+
Sbjct: 296 FEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSK 355
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G ++ A +VF+ + K+ L W S+IVG ++G V + LE F+ M + K ++F G
Sbjct: 356 CGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGV 415
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACSHAG ED +YF +M Y + P IEH+GC+
Sbjct: 416 LNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCL 451
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 98/198 (49%), Gaps = 9/198 (4%)
Query: 96 NNVMVSTALLDMYA--KFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
N+ VS+ LL +YA + + A +FD ++ W L+ +++ +A+ F
Sbjct: 45 NHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFC 104
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
+ V PD T+ VL CA + L G +H V K F + V ++L+ +YS+ G
Sbjct: 105 KLLCDFV-PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCG 163
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
IE R+VF RM + +VSWNS+I G+A G + ALE F M + D S+T +
Sbjct: 164 EIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMP----EKDSFSWTILID 219
Query: 272 ACSHAGLIEDGLQYFDIM 289
S +G +E FD M
Sbjct: 220 GLSKSGKLEAARDVFDRM 237
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 32/237 (13%)
Query: 35 TNNSKSTID-----TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG 89
+N +K D + V W S I+ + R+ +A F M +P++ T + +S
Sbjct: 258 SNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSA 317
Query: 90 CADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFW 130
+ S + ++ T L++MY+K G + A VF + + W
Sbjct: 318 ASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHW 377
Query: 131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
T+++ G E+ LE F M +G++P +T I VLN C++ G HRY
Sbjct: 378 TSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHA---GFAEDAHRYFKM 434
Query: 191 QDF----KDNVRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
+ K ++ L+DV R G +E A+ +RM K V W S++ G +G
Sbjct: 435 MTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHG 491
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 142/266 (53%), Gaps = 19/266 (7%)
Query: 59 GCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVS 101
G L+A + RM PS TF +++ CAD ++N V
Sbjct: 87 GFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQ 146
Query: 102 TALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
AL+ YAK +A VFD M R W ++++G+ + EA+E F M+ SG E
Sbjct: 147 AALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGE 206
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD T +SVL+ C+ + +L +G W+H + + NV + +L++++SR G + AR V
Sbjct: 207 PDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAV 266
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F M++ +VSW ++I G+ ++G+ EA+E F+ M+ + V++ L+AC+HAGLI
Sbjct: 267 FDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLI 326
Query: 280 EDGLQYFDIMKKIYRVSPQIEHHGCI 305
+G F MK+ Y V P +EHH C+
Sbjct: 327 NEGRLVFASMKQEYGVVPGVEHHVCM 352
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 107/215 (49%), Gaps = 24/215 (11%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ + W S IS + ++G EA F +MR G P TFV++LS C+ S
Sbjct: 173 SIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLH 232
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
NV+++T+L++M+++ G + A VFD M + WTA+++G+ Y
Sbjct: 233 ECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGV 292
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK--DNVRVCNT 202
EA+E F M+ GV P+ +T ++VL+ CA+ + G + + KQ++ V
Sbjct: 293 EAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASM-KQEYGVVPGVEHHVC 351
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVS--WNSII 235
++D++ R G + A Q + + LV W +++
Sbjct: 352 MVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAML 386
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V WT+ IS + G +EA F RM+ G P+ +T+V +LS CA L+
Sbjct: 276 VSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAH---------AGLI 326
Query: 106 DMYAKFGRMDLATVV--FDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
+ GR+ A++ + V+ G + +++ F + EA ++ R + + P
Sbjct: 327 NE----GRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVW 382
Query: 164 TIISVLNVCANVRTLGIGL 182
T ++L C + +G+
Sbjct: 383 T--AMLGACKMHKNFDLGV 399
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 152/279 (54%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS---------------GC 90
V W + I+ + R+G E M P T ++L GC
Sbjct: 266 VSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGC 325
Query: 91 A--DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+ V V+++L+DMYAK R+ + VF ++ D W +++ G V+ F+E
Sbjct: 326 SIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEG 385
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L++FR M ++ ++P + S++ CA++ TL +G +H Y+ + F +N+ + ++L+D+
Sbjct: 386 LKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDM 445
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G I ARQ+F RM R +VSW ++I+G A++G +A+E F M+ + + V+F
Sbjct: 446 YAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAF 505
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTACSHAGL+++ +YF+ M + ++P +EH+ +
Sbjct: 506 MAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAV 544
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 96/257 (37%), Gaps = 53/257 (20%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVS--- 101
+ W S I + G ++ F M G P H F ++L CA N+ S
Sbjct: 73 ALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHG 132
Query: 102 --------------TALLDMYAKF------GRMDL-ATVVFDVM----RGCDFWTALLNG 136
AL++MY+K GR L A+ V D M R + L+
Sbjct: 133 YIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVGN 192
Query: 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
++ EA Y + E L I Y P+ ++++
Sbjct: 193 QGRKVSDIEAFNYDVSCRSREFEAQVLEI--------------------DYKPRSEYRE- 231
Query: 197 VRVCN---TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
+ CN + D+ S ++ R++F+ M ++ LVSWN+II G A NG GE L
Sbjct: 232 MEACNLGQQIKDI-SHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVRE 290
Query: 254 MQKGVFKTDEVSFTGAL 270
M K D + + L
Sbjct: 291 MGGANLKPDSFTLSSVL 307
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 151/281 (53%), Gaps = 21/281 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF----------- 93
T W + I ++ EA F M L+G P IT V++LS CA
Sbjct: 288 TKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHS 347
Query: 94 --PSNNV----MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N + +++ +L++MYAK G M A VF M D WT ++ G+VK F
Sbjct: 348 YIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTM 407
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A F M+I+ V + ++S+L+ C+ + L G +H Y+ + + ++ + + L+D
Sbjct: 408 AFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVD 467
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEV 264
+Y++ GCI+ A ++F++M + +SWN++I G A NG+ EA+E F+ +++ K D +
Sbjct: 468 MYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGI 527
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ L AC+H G++++GL+YF +M + V P EH+GCI
Sbjct: 528 TLKAVLGACAHVGMVDEGLRYFYLMSSL-GVVPDTEHYGCI 567
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 128/272 (47%), Gaps = 29/272 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V WTS IS + G + + M+ G P+ +T ++LLS C +
Sbjct: 187 VVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYN 246
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+V + AL+ MY K G + A F M R W L++GFV+ +E
Sbjct: 247 QVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKE 306
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC----- 200
AL F M + GV PD +T++SVL+ CA + L G+ +H Y+ KDN C
Sbjct: 307 ALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYI-----KDNGICCDNILT 361
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N+L+++Y++ G + A +VFQ M K+ +VSW ++ G+ A F M+
Sbjct: 362 NSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVV 421
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
E++ L+ACS G ++ G + ++++
Sbjct: 422 AHEMALVSLLSACSQLGALDKGREIHSYIEEM 453
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 5/194 (2%)
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
ALL A M A VFD M + W ++ G+ + +AL FR M+ GV P
Sbjct: 57 ALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSP 116
Query: 161 DYLTIISVLNVCANVRTL---GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
D T+ +V++ A L G +H V + F +V V + L++ Y F ++ A
Sbjct: 117 DNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEAS 176
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+VF+ M++R +VSW S+I A G + L+ + MQ ++V+ L+AC
Sbjct: 177 KVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQ 236
Query: 278 LIEDGLQYFDIMKK 291
+++G ++ + K
Sbjct: 237 AVDEGRWVYNQVGK 250
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 151/281 (53%), Gaps = 21/281 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF----------- 93
T W + I ++ EA F M L+G P IT V++LS CA
Sbjct: 288 TKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHS 347
Query: 94 --PSNNV----MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N + +++ +L++MYAK G M A VF M D WT ++ G+VK F
Sbjct: 348 YIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTM 407
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A F M+I+ V + ++S+L+ C+ + L G +H Y+ + + ++ + + L+D
Sbjct: 408 AFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVD 467
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEV 264
+Y++ GCI+ A ++F++M + +SWN++I G A NG+ EA+E F+ +++ K D +
Sbjct: 468 MYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGI 527
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ L AC+H G++++GL+YF +M + V P EH+GCI
Sbjct: 528 TLKAVLGACAHVGMVDEGLRYFYLMSSL-GVVPDTEHYGCI 567
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 128/272 (47%), Gaps = 29/272 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V WTS IS + G + + M+ G P+ +T ++LLS C +
Sbjct: 187 VVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYN 246
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+V + AL+ MY K G + A F M R W L++GFV+ +E
Sbjct: 247 QVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKE 306
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC----- 200
AL F M + GV PD +T++SVL+ CA + L G+ +H Y+ KDN C
Sbjct: 307 ALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYI-----KDNGICCDNILT 361
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N+L+++Y++ G + A +VFQ M K+ +VSW ++ G+ A F M+
Sbjct: 362 NSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVV 421
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
E++ L+ACS G ++ G + ++++
Sbjct: 422 AHEMALVSLLSACSQLGALDKGREIHSYIEEM 453
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 5/194 (2%)
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
ALL A M A VFD M + W ++ G+ + +AL FR M+ GV P
Sbjct: 57 ALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSP 116
Query: 161 DYLTIISVLNVCANVRTL---GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
D T+ +V++ A L G +H V + F +V V + L++ Y F +E A
Sbjct: 117 DNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEAS 176
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+VF+ M++R +VSW S+I A G + L+ + MQ ++V+ L+AC
Sbjct: 177 KVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQ 236
Query: 278 LIEDGLQYFDIMKK 291
+++G ++ + K
Sbjct: 237 AVDEGRWVYNQVGK 250
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 119/196 (60%), Gaps = 2/196 (1%)
Query: 109 AKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
AK G +D + +FD M + W +++ G+V+ F+EAL+ F MQ ++P T++
Sbjct: 201 AKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMV 260
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S+LN A + L G+W+H Y+ K + + N V ++D+Y + G I A QVF+++ R
Sbjct: 261 SLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCR 320
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
+L SWNS+I G AVNG EA+ F +++ K D +SF LTAC+H ++++G+++F
Sbjct: 321 SLSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKPDCISFMAVLTACNHGAMVDEGMEFF 380
Query: 287 DIMKKIYRVSPQIEHH 302
MK YR+ P I+H+
Sbjct: 381 SRMKNTYRIEPSIKHY 396
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 21/225 (9%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--- 95
K + + W S I + R+G EA F +M+ PS T V+LL+ A +
Sbjct: 215 KMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQ 274
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK 139
N +V TA++DMY K G + A VF+ + R W +++ G
Sbjct: 275 GVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAV 334
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVR 198
+EA+ F++++ S ++PD ++ ++VL C + + G+ + R + +++
Sbjct: 335 NGCEKEAILVFKMLESSSLKPDCISFMAVLTACNHGAMVDEGMEFFSRMKNTYRIEPSIK 394
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
N ++D+ SR G +E A Q + M ++ + W ++ + G
Sbjct: 395 HYNLMVDMISRAGFLEEAEQFIKTMPIEKDAIIWGCLLSACRIYG 439
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 94/192 (48%), Gaps = 8/192 (4%)
Query: 109 AKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTI 165
+ G MD A +VF M+ + W ++ GF + + AL F M +S VEP LT
Sbjct: 68 SPLGNMDYAYLVFLQMQNPNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTY 127
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
S+ + + G +H + K + + + NT++ +Y+ G + AR++F + +
Sbjct: 128 PSIFKAYSQLGLAHDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEME 187
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
+VSWNS+I+G A G + E+ + F+ M + +S+ + G+ ++ L+
Sbjct: 188 FDVVSWNSMILGLAKCGEIDESRKLFDKMP----VKNPISWNSMIGGYVRNGMFKEALKL 243
Query: 286 FDIMKKIYRVSP 297
F M++ R+ P
Sbjct: 244 FIKMQE-ERIQP 254
>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
Length = 834
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 147/280 (52%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-------- 96
+V W + I+ ++ C + + M G T+ ++L CA S
Sbjct: 397 SVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHG 456
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ VS+ ++DMY K G + A + D + G + W +++ GF EE
Sbjct: 457 KAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGGQELVSWNSIIAGFSLNKQSEE 516
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A ++F M GV+PD+ T +VL+ CAN+ T+ +G +H + KQ+ + + +TL+D
Sbjct: 517 AQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEMLGDEFISSTLVD 576
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + ++ +F+++ K VSWN++I G+A++G EALE F QK + +
Sbjct: 577 MYAKCGNMPDSQLMFEKVQKLDFVSWNAMICGYALHGQGFEALEMFERTQKANVAPNHAT 636
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L ACSH GL++DG +YF +M Y++ PQ+EH C+
Sbjct: 637 FVAVLRACSHVGLLDDGCRYFHLMTSRYKLEPQLEHFACM 676
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 9/172 (5%)
Query: 72 RLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF-- 129
R G +H F T+ P + + +L YA G +AT + VM D
Sbjct: 78 RCGGAAHAHGVFDTM-------PHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVS 130
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W ALL+G+ +R F + + M GV PD T+ +L C + L +G+ +H
Sbjct: 131 WNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAV 190
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN 241
K + +VR + L+D+Y + +E A F M +R VSW ++I G N
Sbjct: 191 KTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVIAGCVQN 242
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 23/194 (11%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVF-----DVMRGCDFWTALLNGFVKRDYFEEALEY 149
S++ +V TA++D+YAK + A F + C+ A++ G V+ EA++
Sbjct: 277 SSDRVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCN---AMMVGLVRTGLGAEAMQL 333
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F+ M SG+ +++ V + CA V+ F +V V N ++D+Y +
Sbjct: 334 FQFMTRSGIGFGVVSLSGVFSACAEVK---------------GFDVDVCVRNAILDLYGK 378
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
+ A VFQ M +R VSWN+II N + + + N M + + D+ ++
Sbjct: 379 CKALVEAYLVFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSV 438
Query: 270 LTACSHAGLIEDGL 283
L AC+ +E GL
Sbjct: 439 LKACAGLQSLEYGL 452
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 94/249 (37%), Gaps = 38/249 (15%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + +S +C+ G + M G P T LL C
Sbjct: 129 VSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHAL 188
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+V +AL+DMY K ++ A F M R W A++ G V+ + +
Sbjct: 189 AVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVIAGCVQNEQYMRG 248
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE +L C + L +H + K F + V ++DV
Sbjct: 249 LE-------------------LLCRCKAITCLSTARQLHAHAIKNKFSSDRVVGTAIVDV 289
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ + AR+ F + T+ + N+++VG G EA++ F M + VS
Sbjct: 290 YAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGIGFGVVSL 349
Query: 267 TGALTACSH 275
+G +AC+
Sbjct: 350 SGVFSACAE 358
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 164 TIISVLNVCANV--RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
T V +CA+ L G H + F + V N L+ +Y+R G A VF
Sbjct: 31 TFSHVYQLCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVFD 90
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
M R VSWN+++ +A G G A +M D VS+ L+ G+ D
Sbjct: 91 TMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMP----DPDVVSWNALLSGYCQRGMFRD 146
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 143/263 (54%), Gaps = 25/263 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V W S IS + R G + A F +M P V+ TA++
Sbjct: 204 VSWNSMISGYVRIGDVRAAQSIFYQM----------------------PEKTVVSWTAMI 241
Query: 106 DMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG-VEPDY 162
YA G + A +F+ M + W A+++G+V F++AL F M I+G PD
Sbjct: 242 SGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQ 301
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T+IS+L+ CA++ +L G W++ Y+ K ++ + N L+D++++ G +E A++VF
Sbjct: 302 TTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHH 361
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M KR +++W +++ G AVNG EA+ F+ M K D+V F L+AC+H GL+E+G
Sbjct: 362 MSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEG 421
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
+ FD M + + + P+IEH+GC+
Sbjct: 422 KRVFDQMVQEFGIKPRIEHYGCM 444
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 9/149 (6%)
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
+EAL + M+ VE + T +L + L G +H + K F +V V N+L
Sbjct: 56 KEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSL 115
Query: 204 MDVYSRFGCIE---FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+ Y+ C E A +VF+ M +R ++SWNS+I + G + A+ + M +
Sbjct: 116 LGFYA--NCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMP----E 169
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIM 289
+ V++ + S AG +E F+ M
Sbjct: 170 RNIVTWNSVVCGLSKAGNMELAHSVFEQM 198
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
N+ N+++ S+ G +E A VF++M R VSWNS+I G+ G V A F M
Sbjct: 171 NIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMP 230
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
+ VS+T ++ + G ++ F+ M
Sbjct: 231 EKTV----VSWTAMISGYATNGDLKSAENIFNHM 260
>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 145/281 (51%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
T V W S IS + G I+ F RM G P+ T +L+ C+
Sbjct: 272 TVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVH 331
Query: 92 -----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ +V V+++L+D+Y K G+++LA +F ++ W +++G+V
Sbjct: 332 GYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLF 391
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL F M+ S VE D +T SVL C+ + L G +H + ++ +N V L+
Sbjct: 392 EALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALL 451
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G ++ A VF+ + KR LVSW S+I + +G ALE F M + K D V
Sbjct: 452 DMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRV 511
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F L+AC HAGL+++G YF+ M +Y + P++EH+ C+
Sbjct: 512 AFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCL 552
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 137/261 (52%), Gaps = 19/261 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN---------- 97
W + IS + +SG +A F MR +G P+ +T T +S CA N
Sbjct: 175 WNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELI 234
Query: 98 -------VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
+S+AL+DMY K G +++A +F+ M + W ++++G+ + ++
Sbjct: 235 NSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQ 294
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F+ M GV+P T+ S++ VC+ L G ++H Y + + +V V ++LMD+Y
Sbjct: 295 LFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYF 354
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G +E A ++F+ + K +VSWN +I G+ G + EAL F+ M+K ++D ++FT
Sbjct: 355 KCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTS 414
Query: 269 ALTACSHAGLIEDGLQYFDIM 289
LTACS +E G + +++
Sbjct: 415 VLTACSQLAALEKGKEIHNLI 435
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 104/188 (55%), Gaps = 2/188 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+++V ++L+ MY K + A +F+ M D W +++ + + F++ALEYF +M+
Sbjct: 140 DIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMR 199
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
G EP+ +TI + ++ CA + L G+ +H + F + + + L+D+Y + G +E
Sbjct: 200 RFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLE 259
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A ++F++M K+T+V+WNS+I G+ + G + ++ F M K + + + CS
Sbjct: 260 MAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCS 319
Query: 275 HAGLIEDG 282
+ + +G
Sbjct: 320 RSARLLEG 327
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 98/193 (50%), Gaps = 4/193 (2%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-CD--FWTALLNGFVKRDYFEEALEYF-R 151
N++ + L++ Y D A VFD M C+ W L+ G+ K + EALE F +
Sbjct: 36 NDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEK 95
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
++ ++PD T SV C + +G +H + K ++ V ++L+ +Y +
Sbjct: 96 LLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCN 155
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
E A +F M ++ + WN++I + +G +ALEYF LM++ F+ + V+ T A++
Sbjct: 156 AFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAIS 215
Query: 272 ACSHAGLIEDGLQ 284
+C+ + G++
Sbjct: 216 SCARLLDLNRGME 228
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D ++ +L C N ++L G +H+ V ++++ +C TL++ Y + A+ VF
Sbjct: 2 DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVF 61
Query: 221 QRMHKRTLVS-WNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTACS---- 274
M +S WN ++ G+ N EALE F L+ K D ++ AC
Sbjct: 62 DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHR 121
Query: 275 -------HAGLIEDGL 283
H LI+ GL
Sbjct: 122 YVLGKMIHTCLIKTGL 137
>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Glycine max]
Length = 975
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 142/281 (50%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
T W + I H ++G ++ F M G +P T +LL CA
Sbjct: 466 TVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIH 525
Query: 92 DFPSNNVM-----VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
F N + + +L+ +Y + M L ++FD M W ++ GF + +
Sbjct: 526 GFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPC 585
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL+ FR M G++P + + VL C+ V L +G +H + K ++ V L+
Sbjct: 586 EALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALI 645
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ GC+E ++ +F R++++ WN II G+ ++G +A+E F LMQ + D
Sbjct: 646 DMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSF 705
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L AC+HAGL+ +GL+Y M+ +Y V P++EH+ C+
Sbjct: 706 TFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACV 746
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 6/185 (3%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
++ V AL+ MY K G ++ A VF+ MR + W +++ + F E F+ +
Sbjct: 228 SDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRL 287
Query: 154 QIS---GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
IS G+ PD T+++V+ CA V + +G+ +H K + V V N+L+D+YS+
Sbjct: 288 LISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKC 347
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGA 269
G + AR +F + +VSWN+II G++ G E MQ+ + +EV+
Sbjct: 348 GYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNV 407
Query: 270 LTACS 274
L ACS
Sbjct: 408 LPACS 412
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 114/267 (42%), Gaps = 23/267 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLY---GTNPSHITFVTLLSGCADFP-------- 94
V W S + +G E F R+ + G P T VT++ CA
Sbjct: 262 VSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVV 321
Query: 95 ---------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYF 143
+ V V+ +L+DMY+K G + A +FD+ G + W ++ G+ K F
Sbjct: 322 HGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDF 381
Query: 144 EEALEYFRVMQ-ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
E + MQ V + +T+++VL C+ L +H Y + F + V N
Sbjct: 382 RGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANA 441
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
+ Y++ ++ A +VF M +T+ SWN++I A NGF G++L+ F +M D
Sbjct: 442 FVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPD 501
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIM 289
+ L AC+ + G + M
Sbjct: 502 RFTIGSLLLACARLKFLRCGKEIHGFM 528
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 6/194 (3%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF-RV 152
N+V++ST ++ MY+ G + VFD + D + ALL+G+ + F +A+ F +
Sbjct: 126 NDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLEL 185
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
+ + + PD T+ V CA V + +G +H K + V N L+ +Y + G
Sbjct: 186 LSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGF 245
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN---LMQKGVFKTDEVSFTGA 269
+E A +VF+ M R LVSWNS++ + NG GE F + ++ D +
Sbjct: 246 VESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTV 305
Query: 270 LTACSHAGLIEDGL 283
+ AC+ G + G+
Sbjct: 306 IPACAAVGEVRMGM 319
>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 497
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 143/274 (52%), Gaps = 26/274 (9%)
Query: 35 TNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP 94
++ SK D V WT+ ++ H R+G + A F M P
Sbjct: 135 SDTSKDVADV-VTWTTMVAGHARAGDVERARWFFDAM----------------------P 171
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
NV+ A+L YA G + A +FD M R W++++ G V+ D+ EEAL F
Sbjct: 172 ERNVVSWNAMLGAYASAGMLSEARKLFDGMHSRNAATWSSMVTGLVQSDHCEEALRVFSD 231
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYSRFG 211
M GV P+ ++SV++ CA +R+L G+W+H YV ++ +V + ++D+Y + G
Sbjct: 232 MVARGVVPNESILVSVISACAQLRSLEHGVWVHAYVKRELHGSMSVILATAIVDMYGKCG 291
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
CI A +VF M R + SWNS+I G A+NG +AL F MQ + ++++F G L
Sbjct: 292 CIHNAIRVFAAMPVRNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVQPNDITFIGLLG 351
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSH+GL+++G F+ M + + P EH+G +
Sbjct: 352 ACSHSGLVDEGRWLFNRMVNDFGIQPVPEHYGLM 385
>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 526
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V++ TA++D Y K G + A VFD M R W+A++ + + F+E L F MQ
Sbjct: 175 DVVLGTAMVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQ 234
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
G EP+ +++VL CA++ L GLW+H Y + + N + L+D+YS+ GC+E
Sbjct: 235 NEGTEPNESILVTVLTACAHLGALTQGLWVHSYARRFHLESNPILATALVDMYSKCGCVE 294
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A VF + + +WN++I G A+NG G++L+ F M K +E +F LTAC+
Sbjct: 295 SALSVFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFRQMAASRTKPNETTFVAVLTACT 354
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
HA +++ GL F+ M +Y V P++EH+ C+
Sbjct: 355 HAKMVQQGLWLFEEMSSVYGVVPRMEHYACV 385
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 32/204 (15%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V W++ ++ + R E FT M+ GT P+ VT+L+ CA +
Sbjct: 207 AVSWSAMMAAYSRVSDFKEVLALFTEMQNEGTEPNESILVTVLTACAHLGALTQGLWVHS 266
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEE 145
+N +++TAL+DMY+K G ++ A VFD V + W A+++G +
Sbjct: 267 YARRFHLESNPILATALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMISGEALNGDAGK 326
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-------HRYVPKQDFKDNVR 198
+L+ FR M S +P+ T ++VL C + + + GLW+ + VP+ + V
Sbjct: 327 SLQLFRQMAASRTKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSVYGVVPRMEHYACV- 385
Query: 199 VCNTLMDVYSRFGCIEFARQVFQR 222
+D+ SR G +E A + +
Sbjct: 386 -----IDLLSRAGMVEEAEKFMEE 404
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 146/280 (52%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
+V W + I + ++G EA F RM G + + ++ + L C +
Sbjct: 227 SVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHE 286
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+NV V AL+ MY+K R+DLA+ VFD + R W A++ G + E+
Sbjct: 287 LLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSED 346
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F MQ+ V+PD T++SV+ A++ W+H Y + +V V L+D
Sbjct: 347 AVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALID 406
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + AR +F +R +++WN++I G+ +GF A+E F M+ +E +
Sbjct: 407 MYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETT 466
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L+ACSHAGL+++G +YF MK+ Y + P +EH+G +
Sbjct: 467 FLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTM 506
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 125/253 (49%), Gaps = 23/253 (9%)
Query: 62 LEAALE-FTRMRLYGTNPSHITFVTLLSGCA---DFPS--------------NNVMVSTA 103
L AAL F M G P TF +LL CA D + + + +TA
Sbjct: 40 LPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATA 99
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF-RVMQISGVEP 160
L +MYAK R A VFD M R W AL+ G+ + A+E R+ + G P
Sbjct: 100 LANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERP 159
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D +T++SVL CAN R L H + + ++ V V ++D Y + G I AR VF
Sbjct: 160 DSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVF 219
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALTACSHAGLI 279
M + VSWN++I G+A NG EAL FN M ++GV TD VS AL AC G +
Sbjct: 220 DWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTD-VSVLAALQACGELGCL 278
Query: 280 EDGLQYFDIMKKI 292
++G++ +++ +I
Sbjct: 279 DEGMRVHELLVRI 291
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 26/203 (12%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
T V W + I ++GC +A FTRM+L P T V+++ AD
Sbjct: 327 TQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIH 386
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+V V TAL+DMYAK GR+++A ++F+ R W A+++G+ + +
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGK 446
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP--KQDF--KDNVRVC 200
A+E F M+ G+ P+ T +SVL+ C++ + G Y K+D+ + +
Sbjct: 447 AAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEG---REYFTSMKEDYGLEPGMEHY 503
Query: 201 NTLMDVYSRFGCIEFARQVFQRM 223
T++D+ R G ++ A Q+M
Sbjct: 504 GTMVDLLGRAGKLDEAWAFIQKM 526
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 130/212 (61%), Gaps = 3/212 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+ +V +ALL MY K G + A VFD + D W A++ G+ + EA+ F M+
Sbjct: 288 DSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMR 347
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
I+G+ PD +T+ VL+ C+ V L +G + Y ++ NV V L+D+Y++ G ++
Sbjct: 348 IAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLD 407
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFTGALTAC 273
A +VF++M + + SWN++I G A NG EA+++F LM+ + K D+++F G L+AC
Sbjct: 408 KAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSAC 467
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
HAGL++DG ++F+ + +++ P+IEH+ C+
Sbjct: 468 VHAGLVKDGKRWFNSLTPEFQIIPKIEHYSCM 499
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%)
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+L F M S + PD T+ +L A + H + K + ++L+
Sbjct: 136 SLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLGKIGLNGHDHTVHSLIT 195
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
+YS AR+VF + R +VSWN+++ + G GE F M K
Sbjct: 196 MYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVK 246
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 146/280 (52%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
+V W + I + ++G EA F RM G + + ++ + L C +
Sbjct: 227 SVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHE 286
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+NV V AL+ MY+K R+DLA+ VFD + R W A++ G + E+
Sbjct: 287 LLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSED 346
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F MQ+ V+PD T++SV+ A++ W+H Y + +V V L+D
Sbjct: 347 AVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALID 406
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + AR +F +R +++WN++I G+ +GF A+E F M+ +E +
Sbjct: 407 MYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETT 466
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L+ACSHAGL+++G +YF MK+ Y + P +EH+G +
Sbjct: 467 FLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTM 506
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 125/253 (49%), Gaps = 23/253 (9%)
Query: 62 LEAALE-FTRMRLYGTNPSHITFVTLLSGCA---DFPS--------------NNVMVSTA 103
L AAL F M G P TF +LL CA D + + + +TA
Sbjct: 40 LPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATA 99
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF-RVMQISGVEP 160
L +MYAK R A VFD M R W AL+ G+ + A+E R+ + G P
Sbjct: 100 LANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERP 159
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D +T++SVL CAN R L H + + ++ V V ++D Y + G I AR VF
Sbjct: 160 DSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVF 219
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALTACSHAGLI 279
M + VSWN++I G+A NG EAL FN M ++GV TD VS AL AC G +
Sbjct: 220 DWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTD-VSVLAALQACGELGCL 278
Query: 280 EDGLQYFDIMKKI 292
++G++ +++ +I
Sbjct: 279 DEGMRVHELLVRI 291
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 26/203 (12%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
T V W + I ++GC +A FTRM+L P T V+++ AD
Sbjct: 327 TQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIH 386
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+V V TAL+DMYAK GR+++A ++F+ R W A+++G+ + +
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGK 446
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP--KQDF--KDNVRVC 200
A+E F M+ G+ P+ T +SVL+ C++ + G Y K+D+ + +
Sbjct: 447 AAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEG---REYFTSMKEDYGLEPGMEHY 503
Query: 201 NTLMDVYSRFGCIEFARQVFQRM 223
T++D+ R G ++ A Q+M
Sbjct: 504 GTMVDLLGRAGKLDEAWAFIQKM 526
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 55/125 (44%)
Query: 132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
A L R AL F M +G P T S+L +CA L G +H + +
Sbjct: 29 ARLRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAAR 88
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
L ++Y++ AR+VF RM R V+WN+++ G+A NG A+E
Sbjct: 89 GIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMV 148
Query: 252 NLMQK 256
MQ+
Sbjct: 149 VRMQE 153
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 139/289 (48%), Gaps = 61/289 (21%)
Query: 78 PSHITFVTLLSGCADFP-----------------SNNVMVSTALLDMYAKFGRMDLATVV 120
P + T ++ GCA ++V V +L++MY+K G +D A V
Sbjct: 113 PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKV 172
Query: 121 FDVMRGCDF-------------WTALLNGFVKRDYFEEALEYFRVMQI------------ 155
FD M D W A++NG++K F+ ALE F M I
Sbjct: 173 FDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAG 232
Query: 156 -------------------SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
G P + T++SVL+ + + LG G W+H Y+ K F+ +
Sbjct: 233 YELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELD 292
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
+ +L+++Y++ GCIE A VF+ + K+ + W +IIVG ++G AL F M K
Sbjct: 293 GILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCK 352
Query: 257 GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
K + + F G L AC+HAGL++DG QYFD+M Y++ P +EH+GC+
Sbjct: 353 TGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCL 401
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 16/179 (8%)
Query: 96 NNVMVSTALLDMYA--KFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFR 151
N+ VS+ LL +Y+ K + A +FD + R W ++ +V+ + + + F
Sbjct: 46 NHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFH 105
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
+ + PD T+ V+ CA + + G +H K F +V V +L+++YS+ G
Sbjct: 106 EL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCG 164
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
I+ AR+VF M + +V WNS+I G V+ +N M G K+ + F AL
Sbjct: 165 EIDCARKVFDGMIDKDVVLWNSLIDGNLVS---------WNAMINGYMKSGD--FDSAL 212
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 29/217 (13%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W I+ + +G ++A F M G+ PSH T V++LS +
Sbjct: 224 VTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSY 283
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+ ++ T+L++MYAK G ++ A VF + + WTA++ G A
Sbjct: 284 MEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHA 343
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-----LWMHRYVPKQDFKDNVRVCN 201
L F M +G++P+ + I VLN C + + G + M+ Y + +
Sbjct: 344 LALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEY----KIEPTLEHYG 399
Query: 202 TLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVG 237
L+D+ R G +E A+ + M V W S++ G
Sbjct: 400 CLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGG 436
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 152/274 (55%), Gaps = 13/274 (4%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGT---NPSHITFVTLLSGCA------DFP 94
+ V WT+ I + RSG + A F +M + N +V L C+ + P
Sbjct: 153 SQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMP 212
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+V+ T ++ Y+ G +D A +FD M + W A+++G+ + EAL+ F
Sbjct: 213 ERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHE 272
Query: 153 MQ-ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
MQ + +EPD +TI+SVL A++ L +G W+HR+V ++ V L+D+Y++ G
Sbjct: 273 MQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCG 332
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
I +R VF M ++ SWN++I FA+NG EAL F M F +E++ G L+
Sbjct: 333 EIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLS 392
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
AC+H+GL+E+G ++F M++ + ++P+IEH+GC+
Sbjct: 393 ACNHSGLVEEGKRWFKAMEE-FGLTPKIEHYGCM 425
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 13/205 (6%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ +TAL+DMYAKFG+MD A +FD M R WTAL+ G+V+ + A + F M
Sbjct: 122 DLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM- 180
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+E D ++++ + + + +P++ +V ++ YS G ++
Sbjct: 181 ---IEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPER----SVVSWTIMIYGYSSNGNLD 233
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEVSFTGALTAC 273
AR +F M ++ L SWN++I G+ N EAL+ F+ MQ + DEV+ L A
Sbjct: 234 SARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAI 293
Query: 274 SHAGLIEDG--LQYFDIMKKIYRVS 296
+ G ++ G + F KK+ R +
Sbjct: 294 ADLGALDLGGWVHRFVRRKKLDRAT 318
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 4/164 (2%)
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
R Y E Y + + + PD T + CA + G +H +V F ++
Sbjct: 66 RQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYA 125
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
L+D+Y++FG ++ AR++F M R+ VSW ++I G+ +G + A + F+ M
Sbjct: 126 ATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM----I 181
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303
+ D +F + A G + + FD M + VS I +G
Sbjct: 182 EKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYG 225
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 130/212 (61%), Gaps = 3/212 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+ +V +ALL MY K G + A VFD + D W A++ G+ + EA+ F M+
Sbjct: 288 DSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMR 347
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
I+G+ PD +T+ VL+ C+ V L +G + Y ++ NV V L+D+Y++ G ++
Sbjct: 348 IAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLD 407
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFTGALTAC 273
A +VF++M + + SWN++I G A NG EA+++F LM+ + K D+++F G L+AC
Sbjct: 408 KAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSAC 467
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
HAGL++DG ++F+ + +++ P+IEH+ C+
Sbjct: 468 VHAGLVKDGKRWFNSLTPEFQIIPKIEHYSCM 499
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%)
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+L F M S + PD T+ +L A + H + K + ++L+
Sbjct: 136 SLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLGKIGLNGHDHTVHSLIT 195
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
+YS AR+VF + R +VSWN+++ + G GE F M K
Sbjct: 196 MYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVK 246
>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 734
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 148/280 (52%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-------- 96
++ W++ ++ + + G +A F +M G PS T V +++ C+D +
Sbjct: 285 SITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHS 344
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
+ V +A++DMYAK G + A F+ ++ D WT+++ G+V+ +E
Sbjct: 345 FAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEG 404
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
L + MQ+ V P+ LT+ SVL C+++ L G MH + K FK V + + L
Sbjct: 405 GLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSA 464
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G ++ +F RM R ++SWN++I G + NG +ALE F M K D V+
Sbjct: 465 MYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVT 524
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L+ACSH GL++ G +YF +M + ++P +EH+ C+
Sbjct: 525 FVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACM 564
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 6/203 (2%)
Query: 84 VTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRD 141
V + +GC S +V V ++LL+MY K G + A +FD M R W +++G+ D
Sbjct: 143 VAVKTGC----SGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSD 198
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
++A+E F +M+ + + SVL+ + + G +H K V V N
Sbjct: 199 IADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVAN 258
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+ +Y++ G ++ A + F+ + ++W++++ G+A G +AL+ FN M
Sbjct: 259 ALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLP 318
Query: 262 DEVSFTGALTACSHAGLIEDGLQ 284
E + G + ACS + +G Q
Sbjct: 319 SEFTLVGVINACSDLCAVVEGKQ 341
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 101/204 (49%), Gaps = 8/204 (3%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYFEE---ALE 148
+++ V+ L++YAK + A +FD + D W +L+N F + A+
Sbjct: 44 SSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAIS 103
Query: 149 YFR-VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
FR +M+ + V P+ T+ V + +N+ + G H K +V V ++L+++Y
Sbjct: 104 LFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMY 163
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
+ G + AR++F RM +R VSW ++I G+A + +A+E F LM++ +E + T
Sbjct: 164 CKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALT 223
Query: 268 GALTACSHAGLIEDGLQYFDIMKK 291
L+A + + G Q + K
Sbjct: 224 SVLSALTSDVFVYTGRQVHSLAIK 247
>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 149/305 (48%), Gaps = 57/305 (18%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I+ + ++G EA F RM G P +T +++S CA +
Sbjct: 218 VSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLASVVSACASLAAAKQGLEIHAC 277
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM----------------------- 124
+++++S AL+DMYAK GR++ A VFD M
Sbjct: 278 VVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDRMPIRNVVSETSMVSGYAKTASVKA 337
Query: 125 ----------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
R W AL+ G+ + EEAL FR+++ + P + T ++LN CAN
Sbjct: 338 ARLLFTKMIERNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPTHYTFGNLLNACAN 397
Query: 175 VRTLGIGLWMHRYVPKQDFK------DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
+ L +G H +V K F+ +V V N L+D+Y + G +E ++F+ M +R
Sbjct: 398 LADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSVEEGCRIFENMVERDY 457
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
VSWN++IVG+A NG+ EAL F M K D V+ GAL ACSHAGL+++G ++F
Sbjct: 458 VSWNAMIVGYAQNGYGMEALGLFRKMLASGEKPDHVTMIGALCACSHAGLVQEGRKHFSS 517
Query: 289 MKKIY 293
M + Y
Sbjct: 518 MTEEY 522
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 103/193 (53%), Gaps = 2/193 (1%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFR 151
P NV A++ K G +D +F M D W +L+ GF + D FEEAL YF
Sbjct: 81 PEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYFV 140
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M G + T S L+ CA ++ L IG +H + K F +V + + L+D+YS+ G
Sbjct: 141 KMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKCG 200
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ A++VF M +R +VSWNS+I + NG EALE F M + F+ DEV+ ++
Sbjct: 201 FVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLASVVS 260
Query: 272 ACSHAGLIEDGLQ 284
AC+ + GL+
Sbjct: 261 ACASLAAAKQGLE 273
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 136/299 (45%), Gaps = 52/299 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----------- 96
W S I+ + EA F +M G + TF + LS CA
Sbjct: 119 WNSLIAGFAQHDRFEEALNYFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLML 178
Query: 97 ------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
+V + +AL+D+Y+K G +D A VFD M R W +L+ + + EALE
Sbjct: 179 KSQFLLDVYMGSALIDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALE 238
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDNVRVCNTLMDVY 207
F M SG EPD +T+ SV++ CA++ GL +H V K+D +D++ + N L+D+Y
Sbjct: 239 IFMRMMESGFEPDEVTLASVVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMY 298
Query: 208 SRFGCIEFARQVFQRMH-------------------------------KRTLVSWNSIIV 236
++ G I AR VF RM +R +VSWN++I
Sbjct: 299 AKCGRINEARCVFDRMPIRNVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIA 358
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ-YFDIMKKIYR 294
G+ NG EAL F ++++ +F L AC++ ++ G Q + ++K +R
Sbjct: 359 GYTQNGENEEALRLFRMLKREAICPTHYTFGNLLNACANLADLQLGRQAHAHVLKHGFR 417
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 31/162 (19%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D +L+ C ++L +H + K F V + N L+D Y + GC + AR++F
Sbjct: 18 DSSPFAKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIF 77
Query: 221 QRMHKR----------TLV---------------------SWNSIIVGFAVNGFVGEALE 249
+M ++ TLV SWNS+I GFA + EAL
Sbjct: 78 DQMPEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALN 137
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
YF M + F +E +F L+AC+ ++ G Q +M K
Sbjct: 138 YFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLK 179
>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 887
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 143/280 (51%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN-------- 97
V W + I+ +G EA F +M G P IT+++LL C N
Sbjct: 429 VSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSY 488
Query: 98 ---------VMVSTALLDMYAKFGRMDLATVVF-DVMRGCDF--WTALLNGFVKRDYFEE 145
+ V +LL MY K + A VF D+ R + W A+L+ +++ E
Sbjct: 489 IVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGE 548
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
++ M SG +PD +TI ++L CA + +LG+G +H Y K +V VCN L+D
Sbjct: 549 TFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLID 608
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G ++ AR VF +VSW+S+IVG+A G EAL F +M + +EV+
Sbjct: 609 MYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVT 668
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ GAL+ACSH GL+E+G + + M+ + + P EH CI
Sbjct: 669 YLGALSACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCI 708
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 125/271 (46%), Gaps = 20/271 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC----------- 90
+ V WTS IS + ++G +A + + +M G P +TF +++ C
Sbjct: 222 LPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQ 281
Query: 91 ------ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
+ +++ AL+ MY FG+++ A+ VF + D W ++ G+++ Y
Sbjct: 282 LHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGY 341
Query: 143 FEEALEYFRVMQISGV-EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
EAL FR + G +P+ SV + C+++ L G +H K + NV
Sbjct: 342 RVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGC 401
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
+L D+Y++FG + A+ F ++ +VSWN+II FA NG EA+++F M
Sbjct: 402 SLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTP 461
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
D +++ L C + G Q + KI
Sbjct: 462 DSITYISLLCTCGSPVRLNQGRQIHSYIVKI 492
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 24/245 (9%)
Query: 63 EAALEFTRMRLYGTNPSHI---TFVTLLSGCADFPS-----------------NNVMVST 102
+ ALE L +N SH T+ +L+ CA+F S ++++
Sbjct: 140 KEALEAFDFHLKNSN-SHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQN 198
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
+++MY K G M A VFD M+ + WT++++G+ + +A+ + M SG P
Sbjct: 199 HMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFP 258
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D LT SV+ C + +G +H +V K F ++ N L+ +Y+ FG IE A VF
Sbjct: 259 DQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVF 318
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTACSHAGLI 279
R+ + L+SW ++I G+ G+ EAL F +L+++G ++ +E F +ACS +
Sbjct: 319 TRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLEL 378
Query: 280 EDGLQ 284
E G Q
Sbjct: 379 EYGKQ 383
>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Brachypodium distachyon]
Length = 642
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/277 (33%), Positives = 145/277 (52%), Gaps = 19/277 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEF-TRMRLYGTNPSHITFVTLLSGC----------ADF- 93
V WT+ ++ + + AL F MR G + TF ++L C AD
Sbjct: 139 VSWTTVVAALANAPGRKKEALRFLVEMRRDGVAANSYTFSSVLGACGTPGVLAAMHADII 198
Query: 94 ---PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
++V V ++L+D Y K G +D VFD M CD W +++ GF + A+E
Sbjct: 199 KVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAME 258
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M+ SG + T+ SVL C + L +G +H +V K D ++ + N L+D+Y
Sbjct: 259 LFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHVLKYD--RDLILHNALLDMYC 316
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ GC+ A +F RMH R ++SW+++I G A NG EAL+ F+LM+ + ++ G
Sbjct: 317 KCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVG 376
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACSHAGL+EDG YF M K++ + P+ EH C+
Sbjct: 377 VLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCM 413
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 99/194 (51%), Gaps = 12/194 (6%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWT----ALLNGFVKRDYFEEALEYF 150
++ VS +L+ MYAKFG +D A +F M R WT AL N ++ +EAL +
Sbjct: 106 SLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRK---KEALRFL 162
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M+ GV + T SVL C T G+ MH + K +V V ++L+D Y +
Sbjct: 163 VEMRRDGVAANSYTFSSVLGACG---TPGVLAAMHADIIKVGLDSDVFVRSSLIDAYMKL 219
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G ++ R VF M LV WNSII GFA +G A+E F M++ F ++ + T L
Sbjct: 220 GDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVL 279
Query: 271 TACSHAGLIEDGLQ 284
AC+ ++E G Q
Sbjct: 280 RACTGMVMLEVGRQ 293
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP------KQDFKDN 196
F AL + +GV D +++ ++ +C T+G G +HR+V +
Sbjct: 47 FTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGATHGS 106
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA-VNGFVGEALEYFNLMQ 255
+ V N+L+ +Y++FG ++ A ++F M +R +VSW +++ A G EAL + M+
Sbjct: 107 LFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMR 166
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
+ + +F+ L AC G++ + DI+K
Sbjct: 167 RDGVAANSYTFSSVLGACGTPGVL--AAMHADIIK 199
>gi|354805179|gb|AER41598.1| pentatricopeptide [Oryza glaberrima]
Length = 544
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 154/317 (48%), Gaps = 33/317 (10%)
Query: 16 PHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYG 75
P Q +N P ++ + V W +S + G + E F MR G
Sbjct: 73 PRPQGVRRNAAPGPGFD------ETPLRDQVLWNVMVSCYSSHGLVRECWDVFGSMRRSG 126
Query: 76 TNPSHITFVTLLS------GCADFPSN-------------------NVMVSTALLDMYAK 110
TF LLS C D + +V+V+TALLDMYAK
Sbjct: 127 FPGDGFTFSALLSVRASSSSCYDHANLLLVLGSSVHGIVIRLGLHLDVVVATALLDMYAK 186
Query: 111 FGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G++ A+ VFD V+R W A++ + K D +EA + F M G PD LT+ S+
Sbjct: 187 CGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELTLASL 246
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ CA++ +H Y ++ +D ++V N L+ Y + G ++ A++ F +H L
Sbjct: 247 LSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYGKNGFVQEAKRTFGMIHNPDL 306
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
V+W+S++ FA G A++ F+ M + + D ++F G +ACSHAGLIEDG +YF +
Sbjct: 307 VTWSSMVSSFAYLGLAKSAIDLFDRMLQQGIRADGIAFLGVFSACSHAGLIEDGFKYFLL 366
Query: 289 MKKIYRVSPQIEHHGCI 305
M + Y++ P +H C+
Sbjct: 367 MTRDYKIDPTPQHLACL 383
>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
Length = 807
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 156/300 (52%), Gaps = 19/300 (6%)
Query: 25 LKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFV 84
+K R S + K + + W + +S + + + F RM+ P T
Sbjct: 363 IKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLA 422
Query: 85 TLLSGCADFP-----------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGC 127
+LS C+ N++ V++ L+DMY+K G++ +A ++F++M
Sbjct: 423 VILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTER 482
Query: 128 DF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185
D W ++++G EEA ++F+ M+ +G+ P + S++N CA + ++ G +H
Sbjct: 483 DVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIH 542
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
V K + NV V ++L+D+Y++ G ++ AR F M + +V+WN +I G+A NGF
Sbjct: 543 AQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGE 602
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+A+E F M K D V+F LT CSH+GL+++ + YF+ M+ Y + P +EH+ C+
Sbjct: 603 KAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAIAYFNSMESNYGIRPLVEHYTCL 662
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 124/274 (45%), Gaps = 27/274 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V W + I+ RS EA + M G P++ T ++LS C +
Sbjct: 107 AVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHG 166
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
N V LL MY K G + A +FD M + +TA++ G + ++
Sbjct: 167 LAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDD 226
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANV--------RTLGIGLWMHRYVPKQDFKDNV 197
AL F M S + D + + SVL CA R + + +H V ++ F +
Sbjct: 227 ALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQ 286
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
V N+L+D+Y++ ++ A +VF+ M ++VSWN ++ G+ G ALE +LMQ+
Sbjct: 287 HVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQES 346
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
F+ +EV+++ L +C A + FD + K
Sbjct: 347 GFEPNEVTYSNMLASCIKARDVPSARAMFDKISK 380
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 2/186 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P NV A + + G + A + M R W ++ + D EALE +
Sbjct: 71 LPRPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMY 130
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R M G+ P T+ SVL+ C V L G H K N V N L+ +Y++
Sbjct: 131 RGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKC 190
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + A ++F M VS+ +++ G A +G V +AL F M + + D V+ + L
Sbjct: 191 GSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVL 250
Query: 271 TACSHA 276
AC+ A
Sbjct: 251 GACAQA 256
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFN 252
+ NV N + R G + AR + RM R VSWN++I A + GEALE Y
Sbjct: 73 RPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRG 132
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
++Q+G+ T+ + L+AC ++DG + + K+
Sbjct: 133 MLQEGLAPTN-FTLASVLSACGAVAALDDGRRCHGLAVKV 171
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 130/212 (61%), Gaps = 3/212 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+ +V +ALL MY K G + A VFD + D W A++ G+ + EA+ F M+
Sbjct: 288 DSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMR 347
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
I+G+ PD +T+ VL+ C+ V L +G + Y ++ NV V L+D+Y++ G ++
Sbjct: 348 IAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLD 407
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFTGALTAC 273
A +VF++M + + SWN++I G A NG EA+++F LM+ + K D+++F G L+AC
Sbjct: 408 KAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSAC 467
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
HAGL++DG ++F+ + +++ P+IEH+ C+
Sbjct: 468 VHAGLVKDGKRWFNSLTPEFQIIPKIEHYSCM 499
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%)
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+L F M S + PD T+ +L A + H + K + ++L+
Sbjct: 136 SLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLGKIGLNGHDHTVHSLIT 195
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
+YS AR+VF + R +VSWN+++ + G GE F M K
Sbjct: 196 MYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVK 246
>gi|414879991|tpg|DAA57122.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 868
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 127/217 (58%), Gaps = 3/217 (1%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ P NV+ ++ +A +G ++ A ++FD M R WT L++G+ + + EAL
Sbjct: 539 EMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTL 598
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
R M G+ P +T+++V+ +N+ + +G ++ Y K+ + RV N+L+D+Y++
Sbjct: 599 LRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAK 658
Query: 210 FGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
G ++ + +VF M +R LVSW SII GFA++G EALE F M++ K + ++F
Sbjct: 659 IGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLS 718
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ ACSH GL+E GL +F M Y + P+I+H GCI
Sbjct: 719 VINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCI 755
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 23/214 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTR-MRLYGTNPSHITFVTLLSGCADFPS--------- 95
V WT I + R+ C+ AL R M G +PS IT + ++ ++
Sbjct: 577 VSWTGLIDGYTRA-CLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNG 635
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFE 144
++ V +L+D+YAK G + + VFD M R WT++++GF
Sbjct: 636 YCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSV 695
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTL 203
EALE F M+ +G++P+ +T +SV+N C++ + GL + V + + ++ +
Sbjct: 696 EALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCI 755
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+D+ R G + A Q+ + + V+ I++G
Sbjct: 756 IDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLG 789
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 5/154 (3%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W A L + + EAL F+ + + D VL CA + G +H V
Sbjct: 448 WRAFLKAYSHGPFPLEALHLFKHAR-QHLADDTFVFTFVLKACAGLGWHRAGAQLHALVV 506
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
++ F+ + V L++VY C+ AR+VF M + +VSWN +I GFA G V E
Sbjct: 507 QKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWGEV----E 562
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
Y L+ + + VS+TG + + A L + L
Sbjct: 563 YARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAL 596
>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 146/275 (53%), Gaps = 20/275 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V WTS I+ + ++ EA M P+ TF +LL +
Sbjct: 118 VSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHAL 177
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+V V +ALLDMYA+ G MD+AT VFD + + W AL++GF ++ E A
Sbjct: 178 AVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETA 237
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F M +G E + T SV + A + L G W+H ++ K K NTL+D+
Sbjct: 238 LMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDM 297
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G + AR+VF R+ + LV+WN+++ FA G EA+ +F M+K ++V+F
Sbjct: 298 YAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTF 357
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEH 301
LTACSH GL+++G +YF++MK+ Y + P+I+H
Sbjct: 358 LCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDH 391
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 2/190 (1%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+ + + +L+ +Y K G + A VFD MR D WT+L+ G+ + D EEA+
Sbjct: 83 AGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPG 142
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M +P+ T S+L GIG +H K D+ ++V V + L+D+Y+R G
Sbjct: 143 MLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGM 202
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ A VF ++ + VSWN++I GFA G AL F M + F+ +++ ++
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSS 262
Query: 273 CSHAGLIEDG 282
+ G +E G
Sbjct: 263 IARLGALEQG 272
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
+ + CA + L +H ++ F + + N+L+ +Y + G + AR+VF M ++
Sbjct: 56 TFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRK 115
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC-SHA 276
+VSW S+I G+A N EA+ M KG FK + +F L A +HA
Sbjct: 116 DMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHA 166
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 20/212 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF------------ 93
V W + IS R G A + F M G +H T+ ++ S A
Sbjct: 219 VSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAH 278
Query: 94 --PSNNVMVSTA---LLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
S M + A LLDMYAK G M A VFD + D W +L F + +EA
Sbjct: 279 MIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEA 338
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ +F M+ SG+ + +T + +L C++ + G + + D + + T++ +
Sbjct: 339 VSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVAL 398
Query: 207 YSRFGCIEFARQ-VFQRMHKRTLVSWNSIIVG 237
R G + FA +F+ + T W +++
Sbjct: 399 LGRAGLLNFALVFIFKMPIEPTAAVWGALLAA 430
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 130/213 (61%), Gaps = 2/213 (0%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
+N++ VS+ +LDMY K G M A +F + D WT +++G+++ + AL + +
Sbjct: 1131 NNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHL 1190
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M++SGV+PD T +++ + + L G +H V K D+ + V +L+D+Y + G
Sbjct: 1191 MRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGS 1250
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ A +VF++M R +V WN++++G A +G V EAL F MQ + D+V+F G L+A
Sbjct: 1251 VQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSA 1310
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
CSH+GL + +YFD M K Y ++P+IEH+ C+
Sbjct: 1311 CSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCL 1343
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 128/278 (46%), Gaps = 25/278 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ W + IS + ++ +EA F + G P T ++L C+
Sbjct: 961 ISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQV 1020
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYF 143
N+ VSTAL+D+Y+K G+MD A + D W A++ G++K +
Sbjct: 1021 HVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKS 1080
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
+ALE+F +M G+ D +T+ + + + L G + Y K F +++ V + +
Sbjct: 1081 RKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGV 1140
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y + G + A ++F + + V+W ++I G+ NG AL ++LM+ + DE
Sbjct: 1141 LDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDE 1200
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEH 301
+F + A S +E G Q I + ++ ++H
Sbjct: 1201 YTFATLIKASSCLTALEQGKQ---IHANVVKLDYSLDH 1235
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 101/249 (40%), Gaps = 10/249 (4%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
V W + + + EA F+ G P ++ G SNN
Sbjct: 783 AVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQ 842
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
+ YA + FD W L F+ A++ F+ + S + D +T
Sbjct: 843 VKAYA------MKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVT 896
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
++ +L+ L +G +H V K F V V N+LM++YS+ G + A + F
Sbjct: 897 LVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP 956
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ L+SWN++I +A N EA+ F + + K D+ + L ACS D +
Sbjct: 957 ELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG----DEGE 1012
Query: 285 YFDIMKKIY 293
YF + +++
Sbjct: 1013 YFTLGSQVH 1021
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%)
Query: 79 SHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNG 136
+H VT D P + ++ L+ MY+K G + A VFD D W ++L
Sbjct: 633 AHARIVT----SGDLP--DRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686
Query: 137 FVK--RDYFEEALEYFRVMQIS---GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
+ + +E LE FR+ + G LT+ +L +C + + +H Y K
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
F+ ++ V L+++Y ++G + AR +F +M +R V WN ++ + N F EAL +F
Sbjct: 747 GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806
Query: 252 NLMQKGVFKTD 262
+ + F D
Sbjct: 807 SAFHRSGFXPD 817
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 27/190 (14%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ VS AL+++Y K+G + A ++FD M R W +L +V+ + +EAL +F
Sbjct: 751 DLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFH 810
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
SG PD+ + V+ G+ D +N + + Y
Sbjct: 811 RSGFXPDFSNLHCVIG--------GV---------NSDVSNNRKRHAEQVKAY------- 846
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A ++F + +WN + F G + A++ F + + D V+ L+A
Sbjct: 847 -AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAV 905
Query: 275 HAGLIEDGLQ 284
A ++ G Q
Sbjct: 906 GADDLDLGEQ 915
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 178 LGIGLWMH-RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIV 236
L +G H R V D D + N L+ +YS+ G + ARQVF + R LV+WNSI+
Sbjct: 627 LKLGKRAHARIVTSGDLPDRY-LTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685
Query: 237 GFA 239
+A
Sbjct: 686 AYA 688
>gi|357494773|ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519010|gb|AET00634.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 165/318 (51%), Gaps = 22/318 (6%)
Query: 9 ILRQPFLPHQQNRNQNLK---KRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAA 65
I+R+ + P + N L K +S + + + W I + R G ++
Sbjct: 341 IIRRHYAPDEMVDNSLLSMYCKFGMLSFAERLFQRSQGSIEYWNFMIVGYGRIGKNVKCI 400
Query: 66 LEFTRMRLYGTNPSHITFVTLLSGCAD-----------------FPSNNVMVSTALLDMY 108
F M+ G + V+ ++ C F + V+ +L++MY
Sbjct: 401 QLFREMQYLGIRSESVGIVSAIASCGQLGEINLGRSIHCNVIKGFVDETISVTNSLIEMY 460
Query: 109 AKFGRMDLATVVFD-VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
K +M+++ +F+ R W AL++ + ++EEA+ F +M + P+ T++
Sbjct: 461 GKCDKMNVSWRIFNRSERDVILWNALISAHIHVKHYEEAISLFDIMIMEDQNPNTATLVV 520
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
VL+ C+++ L G +HRY+ ++ FK N+ + L+D+Y++ G +E +R+VF M ++
Sbjct: 521 VLSACSHLAFLEKGERLHRYINEKGFKLNLPLGTALVDMYAKCGQLEKSREVFDSMMEKD 580
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
++ WN++I G+ +NG+ A+E FNLM++ K +E++F L+AC+HAGL+E+G F
Sbjct: 581 VICWNAMISGYGMNGYAESAIEIFNLMEESNVKPNEITFLSLLSACAHAGLVEEGKNVFA 640
Query: 288 IMKKIYRVSPQIEHHGCI 305
M+ Y V P ++H+ C+
Sbjct: 641 KMQS-YSVKPNLKHYTCM 657
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 19/198 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
+ W + IS H EA F M + NP+ T V +LS C+
Sbjct: 480 VILWNALISAHIHVKHYEEAISLFDIMIMEDQNPNTATLVVVLSACSHLAFLEKGERLHR 539
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N+ + TAL+DMYAK G+++ + VFD M D W A+++G+ Y E
Sbjct: 540 YINEKGFKLNLPLGTALVDMYAKCGQLEKSREVFDSMMEKDVICWNAMISGYGMNGYAES 599
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+E F +M+ S V+P+ +T +S+L+ CA+ + G + + K N++ ++D
Sbjct: 600 AIEIFNLMEESNVKPNEITFLSLLSACAHAGLVEEGKNVFAKMQSYSVKPNLKHYTCMVD 659
Query: 206 VYSRFGCIEFARQVFQRM 223
+ R +E A ++ M
Sbjct: 660 LLGRSCNLEEAEELVLSM 677
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 3/185 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG 157
+ +++L MY K G A F + D WT+++ + + + + +F M +
Sbjct: 251 IQSSVLSMYCKCGVPREAYQSFSEVINKDLLSWTSMIRVYARFGMMSDCVRFFWEMLENQ 310
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
V PD + I +L+ N + G H + ++ + + V N+L+ +Y +FG + FA
Sbjct: 311 VCPDGMVIGCILSGFGNSVDVYGGKAFHGLIIRRHYAPDEMVDNSLLSMYCKFGMLSFAE 370
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
++FQR + ++ WN +IVG+ G + ++ F MQ +++ V A+ +C G
Sbjct: 371 RLFQR-SQGSIEYWNFMIVGYGRIGKNVKCIQLFREMQYLGIRSESVGIVSAIASCGQLG 429
Query: 278 LIEDG 282
I G
Sbjct: 430 EINLG 434
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 25/208 (12%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCAD-------------------FPSNNVMVSTALLDMY 108
++ MR P+H TF + S A FP N+ V ++ + +Y
Sbjct: 97 YSLMRSENVLPNHFTFPMVASSYAHFMMIRSGMNLHALACKVGFFPENSA-VGSSFVSLY 155
Query: 109 AKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVE---PDYL 163
++ M+ A VFD + R WTAL+ G+V+ E LE M G + P+
Sbjct: 156 SRCDEMNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGDDSQKPNAR 215
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T+ C N+ L G +H V K + + ++++ +Y + G A Q F +
Sbjct: 216 TLEGGFLACGNLGDLVSGRCLHGLVVKNGIGCLLDIQSSVLSMYCKCGVPREAYQSFSEV 275
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYF 251
+ L+SW S+I +A G + + + +F
Sbjct: 276 INKDLLSWTSMIRVYARFGMMSDCVRFF 303
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 86/194 (44%), Gaps = 6/194 (3%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
S N ++ L+ +Y ++ +F + D W + L R + + L ++ +
Sbjct: 40 STNPFIAAKLISLYDTLNHPTSSSTLFHSLPFKDTFLWNSFLKTLFSRSLYPQFLSFYSL 99
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSRFG 211
M+ V P++ T V + A+ + G+ +H K F +N V ++ + +YSR
Sbjct: 100 MRSENVLPNHFTFPMVASSYAHFMMIRSGMNLHALACKVGFFPENSAVGSSFVSLYSRCD 159
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK---GVFKTDEVSFTG 268
+ A +VF + R +V+W ++++G+ NG LE + M + K + + G
Sbjct: 160 EMNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGDDSQKPNARTLEG 219
Query: 269 ALTACSHAGLIEDG 282
AC + G + G
Sbjct: 220 GFLACGNLGDLVSG 233
>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
[Brassica oleracea]
Length = 968
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 150/281 (53%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T W + I + +S + + +M+ G P T +LLS C+ S
Sbjct: 458 TVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVH 517
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ V +LL +Y G + A V+FD M W ++NG+++ + E
Sbjct: 518 GLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPE 577
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
AL FR M + GV+P ++++SV C+ + +L +G H Y K +DN + +++
Sbjct: 578 RALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVI 637
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G + + +VF + +R++ SWN++++G+ ++G EA++ F MQ+ DE+
Sbjct: 638 DMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDEL 697
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G LTAC+H+GL+ +GL Y D MK ++ ++P ++H+ C+
Sbjct: 698 TFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACV 738
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 6/176 (3%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF-R 151
SN+ ++ T ++ MY+ G D + VFD +R + W A+++ + + + + LE F +
Sbjct: 114 SNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVK 173
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
++ SG+ PD T V+ CA V + +GL +H V K ++V V N L+ Y G
Sbjct: 174 MITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNG 233
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
+ A +VF+ M +R LVSWNS+I F+ NG + E F L+ + + K DE++FT
Sbjct: 234 SVSDALRVFKIMPERNLVSWNSMIRVFSDNGL---SEECFLLLGQMMEKDDEIAFT 286
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 2/185 (1%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEY 149
+F NN +V+ A + YAK G + A VF +R + W AL+ G+ + +L+
Sbjct: 422 EFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDA 481
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
+ M+ SG+ PD T+ S+L+ C+ +++L +G +H + + + + V +L+ +Y
Sbjct: 482 YFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIH 541
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G + A +F M +TLVSWN+++ G+ NGF AL F M + E+S
Sbjct: 542 CGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSV 601
Query: 270 LTACS 274
ACS
Sbjct: 602 FGACS 606
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 114/269 (42%), Gaps = 31/269 (11%)
Query: 36 NNSKSTIDTT-----VQWTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSG 89
++S+S D QW + IS + R+ F +M G P + TF ++
Sbjct: 134 DDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKA 193
Query: 90 CADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFW 130
CA +V VS AL+ Y G + A VF +M R W
Sbjct: 194 CAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSW 253
Query: 131 TALLNGFVKRDYFEEALEYFRVMQISGVE----PDYLTIISVLNVCANVRTLGIGLWMHR 186
+++ F EE M E PD T+ +VL VCA R +G+G +H
Sbjct: 254 NSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHG 313
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
K V V N LMD+YS+ GCI A+ +F+ + + +VSWN+++ GF+ G + +
Sbjct: 314 LAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHK 373
Query: 247 ALEYFN--LMQKGVFKTDEVSFTGALTAC 273
+ L G + DEV+ A+ C
Sbjct: 374 TFDLLRQMLAGGGDLRADEVTILNAVPVC 402
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 7/184 (3%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
V+V+ AL+DMY+K G ++ A V+F + + W ++ GF + + R M
Sbjct: 324 VVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLA 383
Query: 156 SG--VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSRFGC 212
G + D +TI++ + VC L +H Y KQ+F +N V N + Y++ G
Sbjct: 384 GGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGS 443
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLMQKGVFKTDEVSFTGALT 271
+ +A +VF + +T+ SWN++I G++ + +L+ YF + G+ D + L+
Sbjct: 444 LSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLL-PDLFTVCSLLS 502
Query: 272 ACSH 275
ACS
Sbjct: 503 ACSQ 506
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRV-CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ + +G +H+ V + N V C ++ +YS G + +R VF + K+ L WN++
Sbjct: 95 KDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAV 154
Query: 235 IVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
I ++ N LE F ++ + D +F + AC+ ++ GL ++ K
Sbjct: 155 ISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVK 212
>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 609
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 147/279 (52%), Gaps = 26/279 (9%)
Query: 48 WTSSISRHCRSGCILEA-ALEFTRMRLYGTNPSHITFVTLLSGCADFP------------ 94
WT+ +S ++ EA L + R G P TF T+L+ C +
Sbjct: 232 WTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKL 291
Query: 95 -----SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEAL 147
+NV+V ++LLDMY K G + A VF+ M + W+ALL G+ + E+A+
Sbjct: 292 ITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAI 351
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH-RYVPKQDFKDNVRVCNTLMDV 206
E FR M+ E D +VL CA + + +G +H +YV + F NV V + L+D+
Sbjct: 352 EIFREME----EKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCF-GNVIVESALIDL 406
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + GCI+ A +V+ +M R +++WN+++ A NG EA+ +FN M K K D +SF
Sbjct: 407 YGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISF 466
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTAC H G++++G YF +M K Y + P EH+ C+
Sbjct: 467 IAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCM 505
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 4/189 (2%)
Query: 100 VSTALLDMYAKFG-RMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQIS 156
V +LL +Y K G M VFD ++ WT++++G+V +ALE F M
Sbjct: 98 VGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSF 157
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
G++ + T+ S + C+ + + +G H V F+ N + +TL +Y A
Sbjct: 158 GLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDA 217
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEVSFTGALTACSH 275
R+VF M + ++ W +++ F+ N EAL F M +G D +F LTAC +
Sbjct: 218 RRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGN 277
Query: 276 AGLIEDGLQ 284
++ G +
Sbjct: 278 LRRLKQGKE 286
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 129/214 (60%), Gaps = 2/214 (0%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P N+ L+D YA+ +D+A ++F+ M D WT ++N + + F EAL F
Sbjct: 173 PDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFN 232
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M G+ PD +T+ +V++ CA++ L +G +H Y+ + F +V + + L+D+Y++ G
Sbjct: 233 EMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCG 292
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ + +F ++ ++ L WNS+I G AV+G+ EAL F+ M++ K + V+F L+
Sbjct: 293 SLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLS 352
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
AC+HAGLIE+G + F M + + + P +EH+GC+
Sbjct: 353 ACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCM 386
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 2/148 (1%)
Query: 109 AKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
+ F RMD A + + M + + A++ GFV+ +ALE + M + V P T
Sbjct: 25 STFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFP 84
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S++ C V L +H +V + F +V V +L+D YS G IE + +VF M +R
Sbjct: 85 SLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPER 144
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+ +W +++ G G + A F++M
Sbjct: 145 DVFAWTTMVSGLVRVGDMSSAGRLFDMM 172
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 129/231 (55%), Gaps = 20/231 (8%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--------------------WTALL 134
S+N + L+++Y K G + A VFD M D WTA++
Sbjct: 162 SSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMI 221
Query: 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK 194
+G V+ ALE FR MQ V P+ +TI+ VL+ C+ + L +G W+ Y+ K +
Sbjct: 222 DGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIE 281
Query: 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
N V L+++YSR G I+ A++VF++M ++ ++++NS+I+GFA++G EA+E F +
Sbjct: 282 LNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGL 341
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
K F V+F G L ACSH GL E G + F M K Y + PQIEH+GC+
Sbjct: 342 IKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCM 392
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 102/255 (40%), Gaps = 55/255 (21%)
Query: 75 GTNPSHIT-----FVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLAT---VVFDVMRG 126
GT P + F++LL C + + +YAK R VVF+++R
Sbjct: 22 GTKPKNTPNRRRHFISLLQNCKH--------NNQIPPIYAKIIRNHHHQDPFVVFELLRV 73
Query: 127 CD---------------------FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
C +TAL++G V Y+ + + + M S + PD +
Sbjct: 74 CSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAV 133
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
SVL C L G +H V K N + L+++Y + G E AR+VF M +
Sbjct: 134 TSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPE 193
Query: 226 RTLVS------------------WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
R +V+ W ++I G NG ALE F MQ+ +EV+
Sbjct: 194 RDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIV 253
Query: 268 GALTACSHAGLIEDG 282
L+ACS G ++ G
Sbjct: 254 CVLSACSELGALQLG 268
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
I TV WT+ I R+G A F M+ P+ +T V +LS C++ +
Sbjct: 211 IKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRW 270
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
N V AL++MY++ G +D A VF+ M+ + + +++ GF
Sbjct: 271 VRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGK 330
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-HRYVPKQDFKDNVRVCN 201
EA+E FR + G P +T + VLN C++ +G + H + +
Sbjct: 331 SVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYG 390
Query: 202 TLMDVYSRFGCIEFARQVFQRMHK 225
++D+ R G +E A F RM K
Sbjct: 391 CMVDLLGRLGRLEEAYS-FIRMMK 413
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L+ YA+ GR+ A +FD M R W+A++NG+V+ EAL F MQ V PD
Sbjct: 149 LITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPD 208
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
++ VL CA L G W+H Y+ K N+ L+D+YS+ G ++ A VF+
Sbjct: 209 DTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFE 268
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
RM + +++W ++I G A++G EA+ F M+ + D+++F G L AC+HAGL++
Sbjct: 269 RMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDK 328
Query: 282 GLQYFDIMKKIYRVSPQIEHHGCI 305
G + FD M + Y + P+IEH+GC+
Sbjct: 329 GRELFDSMVRKYGIKPKIEHYGCM 352
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 21/214 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V W++ ++ + ++G EA F RM+ P V +L+ CA +
Sbjct: 174 AVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHG 233
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
N+ TAL+DMY+K G + LA VF+ M + WT ++ G E
Sbjct: 234 YLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSE 293
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-HRYVPKQDFKDNVRVCNTLM 204
A+ F M+ SG+ PD + I VL C + + G + V K K + ++
Sbjct: 294 AVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMV 353
Query: 205 DVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVG 237
D+ +R G + A+++ Q+M + + W +++ G
Sbjct: 354 DLLARNGFLYEAKEMIQKMPMEPDALIWGALMAG 387
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
NTL+ Y+R G + AR +F M R VSW++++ G+ G EAL F MQ +
Sbjct: 147 NTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVR 206
Query: 261 TDEVSFTGALTACSHAGLIEDG 282
D+ G L AC+ G +E G
Sbjct: 207 PDDTVLVGVLAACAQHGALEQG 228
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 145/279 (51%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V + S + RS L+A F + Y P TF +LL C +
Sbjct: 93 VLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCL 152
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFD-VMRGCDF-WTALLNGFVKRDYFEEA 146
N V L++MYA +D A VFD ++ C + A++ G+ + EA
Sbjct: 153 AIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEA 212
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L FR +Q ++P+ +T++SVL+ CA + L +G W+H YV K V+V L+D+
Sbjct: 213 LSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDM 272
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G ++ A VF+ M R +W+++IV +A++G + + F M + + DE++F
Sbjct: 273 YAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITF 332
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSH GL+++G +YF M ++Y + P I+H+GC+
Sbjct: 333 LGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCM 371
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 148/280 (52%), Gaps = 22/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC--------------- 90
V W + I+ + + A F + G P TF ++L+ C
Sbjct: 474 VAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSL 533
Query: 91 ---ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
A F S+ + + AL+ M+ G + A +F+ M D W ++ GFV+ +
Sbjct: 534 IIRAGFESD-LHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQF 592
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A +YF++MQ SGV+PD +T +LN CA+ L G +H + + +V V L+
Sbjct: 593 AFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLIS 652
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G I+ A VF + K+ + SW S+I G+A +G EALE F MQ+ K D ++
Sbjct: 653 MYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWIT 712
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F GAL+AC+HAGLI++GL +F+ MK + + P++EH+GC+
Sbjct: 713 FVGALSACAHAGLIKEGLHHFESMKD-FNIEPRMEHYGCM 751
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 123/257 (47%), Gaps = 21/257 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WTS I+ R +A F M G P + FV+LL C + P
Sbjct: 272 ITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKAC-NHPEALEQGKRVHA 330
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ V TALL MY K G M+ A VF++++G + WTA++ GF + EE
Sbjct: 331 RMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEE 390
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A +F M SG+EP+ +T +S+L C+ L G +H + K + + RV L+
Sbjct: 391 AFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLS 450
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + AR VF+R+ K+ +V+WN++I + + A+ F + K K D +
Sbjct: 451 MYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSST 510
Query: 266 FTGALTACSHAGLIEDG 282
FT L C +E G
Sbjct: 511 FTSILNVCKSPDALELG 527
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 20/239 (8%)
Query: 75 GTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLA 117
G P TFV +L+ CAD + ++ V TAL++M+ K G +D A
Sbjct: 200 GVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDA 259
Query: 118 TVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
VF+ + D WT+++ G + F++A F+VM+ GV+PD + +S+L C +
Sbjct: 260 LKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHP 319
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
L G +H + + + V L+ +Y++ G +E A +VF + R +VSW ++I
Sbjct: 320 EALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMI 379
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD-IMKKIY 293
GFA +G + EA +FN M + + + V+F L ACS ++ G Q D I+K Y
Sbjct: 380 AGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGY 438
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 103/198 (52%), Gaps = 2/198 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
++ + L+ MYAK G + A +FD M D W LL G+V+ +EEA M
Sbjct: 138 DIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMV 197
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
GV+PD T + +LN CA+ + + G + + + ++ V L++++ + G ++
Sbjct: 198 QDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVD 257
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +VF + +R L++W S+I G A + +A F +M++ + D+V+F L AC+
Sbjct: 258 DALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACN 317
Query: 275 HAGLIEDGLQYFDIMKKI 292
H +E G + MK++
Sbjct: 318 HPEALEQGKRVHARMKEV 335
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 73/158 (46%)
Query: 132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
A LN K EA+ + ++ T S+L +C + LG G +H ++
Sbjct: 74 AFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFS 133
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
+ ++ + N L+ +Y++ G A+Q+F M + + SWN ++ G+ + EA
Sbjct: 134 KIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLH 193
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
M + K D+ +F L AC+ A ++ G + F ++
Sbjct: 194 EQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLI 231
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 130/213 (61%), Gaps = 2/213 (0%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
+N++ VS+ +LDMY K G M A +F + D WT +++G+++ + AL + +
Sbjct: 1131 NNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHL 1190
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M++SGV+PD T +++ + + L G +H V K D+ + V +L+D+Y + G
Sbjct: 1191 MRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGS 1250
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ A +VF++M R +V WN++++G A +G V EAL F MQ + D+V+F G L+A
Sbjct: 1251 VQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSA 1310
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
CSH+GL + +YFD M K Y ++P+IEH+ C+
Sbjct: 1311 CSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCL 1343
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 128/278 (46%), Gaps = 25/278 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ W + IS + ++ +EA F + G P T ++L C+
Sbjct: 961 ISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQV 1020
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYF 143
N+ VSTAL+D+Y+K G+MD A + D W A++ G++K +
Sbjct: 1021 HVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKS 1080
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
+ALE+F +M G+ D +T+ + + + L G + Y K F +++ V + +
Sbjct: 1081 RKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGV 1140
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y + G + A ++F + + V+W ++I G+ NG AL ++LM+ + DE
Sbjct: 1141 LDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDE 1200
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEH 301
+F + A S +E G Q I + ++ ++H
Sbjct: 1201 YTFATLIKASSCLTALEQGKQ---IHANVVKLDYSLDH 1235
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 4/164 (2%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W L F+ A++ F+ + S + D +T++ +L+ L +G +H V
Sbjct: 862 WNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVI 921
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
K F V V N+LM++YS+ G + A + F + L+SWN++I +A N EA+
Sbjct: 922 KSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAIC 981
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
F + + K D+ + L ACS D +YF + +++
Sbjct: 982 TFRDLLRDGLKPDQFTLASVLRACSTG----DEGEYFTLGSQVH 1021
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%)
Query: 79 SHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNG 136
+H VT D P + ++ L+ MY+K G + A VFD D W ++L
Sbjct: 633 AHARIVT----SGDLP--DRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686
Query: 137 FVK--RDYFEEALEYFRVMQIS---GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
+ + +E LE FR+ + G LT+ +L +C + + +H Y K
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
F+ ++ V L+++Y ++G + AR +F +M +R V WN ++ + N F EAL +F
Sbjct: 747 GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806
Query: 252 NLMQKGVFKTD 262
+ + F D
Sbjct: 807 SAFHRSGFFPD 817
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 27/190 (14%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ VS AL+++Y K+G + A ++FD M R W +L +V+ + +EAL +F
Sbjct: 751 DLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFH 810
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
SG PD+ + V+ G+ D +N + + Y
Sbjct: 811 RSGFFPDFSNLHCVIG--------GV---------NSDVSNNRKRHAEQVKAY------- 846
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A ++F + +WN + F G + A++ F + + D V+ L+A
Sbjct: 847 -AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAV 905
Query: 275 HAGLIEDGLQ 284
A ++ G Q
Sbjct: 906 GADDLDLGEQ 915
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 178 LGIGLWMH-RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIV 236
L +G H R V D D + N L+ +YS+ G + ARQVF + R LV+WNSI+
Sbjct: 627 LKLGKRAHARIVTSGDLPDRY-LTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685
Query: 237 GFA 239
+A
Sbjct: 686 AYA 688
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 139/237 (58%), Gaps = 5/237 (2%)
Query: 71 MRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF- 129
M +YG + + + + P + + +T +++ Y++ G + A +F ++ D
Sbjct: 165 MEIYGKSGELVNAKKMFD---EMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTV 221
Query: 130 -WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
WTA+++G V+ +ALE FR MQ+ V + T + VL+ C+++ L +G W+H +V
Sbjct: 222 CWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFV 281
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
Q + + V N L+++YSR G I AR+VF+ M + ++S+N++I G A++G EA+
Sbjct: 282 ENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAI 341
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F M F+ ++V+ L ACSH GL++ GL+ F+ MK+++ V PQIEH+GCI
Sbjct: 342 NEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCI 398
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 10/200 (5%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYF 150
F + V L+ + + +D A VF + + +TA+++GFV + + +
Sbjct: 56 FHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLY 115
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M + V PD I SVL C L + +H V K F + V +M++Y +
Sbjct: 116 HRMIHNSVLPDNYVITSVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKS 171
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + A+++F M R V+ +I ++ GF+ EALE F + V D V +T +
Sbjct: 172 GELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELF----QDVKIKDTVCWTAMI 227
Query: 271 TACSHAGLIEDGLQYFDIMK 290
+ L+ F M+
Sbjct: 228 DGLVRNKEMNKALELFREMQ 247
>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
Length = 583
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 147/272 (54%), Gaps = 20/272 (7%)
Query: 51 SISRHCRSGCILEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPS-------------- 95
S++R + AAL F R L P S F ++ CAD +
Sbjct: 78 SLTRAAARRGLPAAALAFYRRLLAAALPFSSFAFTSVAKACADLSALRAGMGVHAHAVLL 137
Query: 96 ---NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
++ V TAL+ +Y+K G++D+A +FD +R W A+++G+ + A+E +
Sbjct: 138 GFGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYEQNGLAGRAIEVY 197
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
R M+++G PD T ++ L+ CA L +G + R + + + NV + L+++Y+R
Sbjct: 198 REMRVAGEAPDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVVLGAALVNMYARC 257
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + AR+ F + +R +V+W S+I G+ ++G GEA++ F+LM++ ++V+F L
Sbjct: 258 GLVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPNDVTFVAVL 317
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
+AC+HAGL+ DG F MK +Y + P+ EH+
Sbjct: 318 SACAHAGLVSDGRDAFASMKSVYGLVPRAEHY 349
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 32/201 (15%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V W + IS + ++G A + MR+ G P TFV LS CA +
Sbjct: 173 SVVAWNAMISGYEQNGLAGRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDLGHEVE 232
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
NV++ AL++MYA+ G ++ A FD++ R WT+++ G+ +
Sbjct: 233 RLIVSERMEMNVVLGAALVNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGG 292
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-------WMHRYVPKQDFKDNV 197
EA++ F +M+ G P+ +T ++VL+ CA+ + G ++ VP+ +
Sbjct: 293 EAVKLFDLMRQQGPPPNDVTFVAVLSACAHAGLVSDGRDAFASMKSVYGLVPRAE----- 347
Query: 198 RVCNTLMDVYSRFGCIEFARQ 218
C +++D+Y R G ++ A Q
Sbjct: 348 HYC-SMVDMYGRAGLLDDAMQ 367
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 23/146 (15%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD----------FP 94
V WTS I+ + G EA F MR G P+ +TFV +LS CA F
Sbjct: 275 VVTWTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPNDVTFVAVLSACAHAGLVSDGRDAFA 334
Query: 95 SNNVMVS--------TALLDMYAKFGRMDLA-TVVFDVM---RGCDFWTALLNGFVKRDY 142
S + +++DMY + G +D A + D + G + WTA+L
Sbjct: 335 SMKSVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIHDSIPGEPGPEVWTAMLGACKMHKN 394
Query: 143 FEEALEYF-RVMQISGVEPDYLTIIS 167
F +E R++ + P + ++S
Sbjct: 395 FSLGVEVAERLIALEPENPSHRVLLS 420
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 147/267 (55%), Gaps = 26/267 (9%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVST 102
+ V W++ IS R G I AA E L+ +P D S NVM++
Sbjct: 178 EDAVAWSAMISGFARRGDI-GAARE-----LFDESP-----------VKDLVSWNVMITA 220
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
YAK G M A +FD D W A+++G+V+ ++A+E F MQ G +P
Sbjct: 221 -----YAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKP 275
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ--DFKDNVRVCNTLMDVYSRFGCIEFARQ 218
D +T++S+L+ CA+ + G +HR++ + + + N L+D+Y++ G + A +
Sbjct: 276 DTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGSMTSALE 335
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF M + + +WNSII G A++G V EA++ F M +G K DE++F L ACSH G+
Sbjct: 336 VFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVACSHGGM 395
Query: 279 IEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++ G +YF++M++ Y + P ++H+GC+
Sbjct: 396 VDKGHEYFNLMQQRYMIEPNVKHYGCM 422
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
GV PD T VL CA + G +H +V K + + V N L+ +++ G +
Sbjct: 108 GGVRPDKRTFPFVLRACAAMGASETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGA 167
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
A +F + V+W+++I GFA G +G A E F+ + V D VS+ +TA +
Sbjct: 168 AAALFDGEAREDAVAWSAMISGFARRGDIGAARELFD--ESPV--KDLVSWNVMITAYAK 223
Query: 276 AGLIEDGLQYFD 287
G + + FD
Sbjct: 224 LGDMAPARELFD 235
>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
Length = 488
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 143/263 (54%), Gaps = 25/263 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V W S IS + R G + A F +M P V+ TA++
Sbjct: 140 VSWNSMISGYVRIGDVRAAQSIFYQM----------------------PEKTVVSWTAMI 177
Query: 106 DMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG-VEPDY 162
YA G + A +F+ M + W A+++G+V F++AL F M I+G PD
Sbjct: 178 SGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQ 237
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T+IS+L+ CA++ +L G W++ Y+ K ++ + N L+D++++ G +E A++VF
Sbjct: 238 TTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHH 297
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M KR +++W +++ G AVNG EA+ F+ M K D+V F L+AC+H GL+E+G
Sbjct: 298 MSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEG 357
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
+ FD M + + + P+IEH+GC+
Sbjct: 358 KRVFDQMVQEFGIKPRIEHYGCM 380
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE--- 214
VE + T +L + L G +H + K F +V V N+L+ Y+ C E
Sbjct: 6 VEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYAN--CSENLG 63
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +VF+ M +R ++SWNS+I + G + A+ + M + + V++ + S
Sbjct: 64 SAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMP----ERNIVTWNSVVCGLS 119
Query: 275 HAGLIEDGLQYFDIM 289
AG +E F+ M
Sbjct: 120 KAGNMELAHSVFEQM 134
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
N+ N+++ S+ G +E A VF++M R VSWNS+I G+ G V A F M
Sbjct: 107 NIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMP 166
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
+ VS+T ++ + G ++ F+ M
Sbjct: 167 EKTV----VSWTAMISGYATNGDLKSAENIFNHM 196
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 151/281 (53%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WT+ ISR+ ++G EA F M P+ TF T+L+ C
Sbjct: 118 VSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGL 177
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+++ V ++LLDMYAK G+++ A +F+ + D TA++ G+ + EEA
Sbjct: 178 IVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEA 237
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F+ +Q G+ P+Y+T S+L + + L G H +V +++ + N+L+D+
Sbjct: 238 LEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDM 297
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVS 265
YS+ G + +A+++F M +RT +SWN+++VG++ +G E LE F LM+ + K D V+
Sbjct: 298 YSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVT 357
Query: 266 FTGALTACSHAGLIEDGLQYFDIM-KKIYRVSPQIEHHGCI 305
L+ CSH + + GL +D M Y + P EH+GCI
Sbjct: 358 LLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCI 398
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 128/266 (48%), Gaps = 26/266 (9%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------- 92
S+ ++ +Q IS+ C +G + EA LE M + G + LL+ C D
Sbjct: 14 SSPNSVLQTFRPISQLCSNGRLQEALLE---MVMLGPEIGFHCYDALLNACLDKRALREG 70
Query: 93 ------------FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFV 138
P+ + T LL Y K ++ A V D M + WTA+++ +
Sbjct: 71 QRVHAHMIKTRYLPAT--YLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYS 128
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ + EAL F M S +P+ T +VL C L +G +H + K ++ ++
Sbjct: 129 QTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIF 188
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V ++L+D+Y++ G IE AR++F+ + +R +VS +II G+A G EALE F +Q
Sbjct: 189 VGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEG 248
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQ 284
+ + V++ LTA S L++ G Q
Sbjct: 249 MRPNYVTYASLLTALSGLALLDHGKQ 274
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M + G E + ++LN C + R L G +H ++ K + + L+ Y + C
Sbjct: 42 MVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC 101
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+E AR+V M ++ +VSW ++I ++ G EAL F M + K +E +F LT+
Sbjct: 102 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTS 161
Query: 273 CSHAGLIEDGLQYFDIMKK 291
C A + G Q ++ K
Sbjct: 162 CIRASGLALGKQIHGLIVK 180
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 143/280 (51%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
++ WT I+ ++G EA F MRL G TF ++L+ C +
Sbjct: 235 SISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHA 294
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+NV V +AL+DMY+K + A VF M + WTA+L G+ + + EE
Sbjct: 295 YVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEE 354
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A++ F MQ +GVEPD T+ SV++ CAN+ +L G H + V N L+
Sbjct: 355 AVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALIT 414
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y + G E + ++F M+ R VSW +++ G+A G E + F M K D V+
Sbjct: 415 LYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVT 474
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L+ACS AGL+E GLQYF+ M K + + P ++H CI
Sbjct: 475 FIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCI 514
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 136/291 (46%), Gaps = 51/291 (17%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFP---------- 94
V W +IS + G +A + M + N + ITF T+L C+ F
Sbjct: 103 VSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQING 162
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM----------------------- 124
++V V + L+DMY K G + A FD M
Sbjct: 163 QILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEE 222
Query: 125 ----------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
R WT ++ G ++ EAL+ FR M+++G D T SVL C +
Sbjct: 223 SQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGS 282
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ LG G +H YV + D KDNV V + L+D+YS+ I+ A VF+RM ++ ++SW ++
Sbjct: 283 LLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAM 342
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
+VG+ NGF EA++ F MQ+ + D+ + +++C++ +E+G Q+
Sbjct: 343 LVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQF 393
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 34/225 (15%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFR 151
P N+ +L +Y+K G + +F++M R W ++G+ +A+ ++
Sbjct: 67 PQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYK 126
Query: 152 VM-QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+M + + + + +T ++L +C+ R + +G ++ + K F +V V + L+D+Y++
Sbjct: 127 LMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKL 186
Query: 211 GCIEFARQVFQRMHKRTLV-------------------------------SWNSIIVGFA 239
G I A++ F M +R +V SW +I G
Sbjct: 187 GLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLM 246
Query: 240 VNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
NG EAL+ F M+ F D+ +F LTAC + +G Q
Sbjct: 247 QNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQ 291
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S+L +C + +H + K + + N L+ Y + G + +A VF + +
Sbjct: 10 SLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQP 69
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
L SWN+I+ ++ G + + + FNLM F+ D VS+ A++ ++ G D ++ +
Sbjct: 70 NLFSWNTILSVYSKLGLLSQMQQIFNLMP---FR-DGVSWNLAISGYANYGSCSDAVRVY 125
Query: 287 DIMKK 291
+M K
Sbjct: 126 KLMLK 130
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 149/281 (53%), Gaps = 20/281 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T V WTS I+ + R G +A F M+ G P T +++ CA S
Sbjct: 361 TIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVH 420
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+N+ V+ AL++MYAK G ++ A +VF + D W ++ G+ +
Sbjct: 421 SYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPN 480
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EALE F MQ +PD +T+ VL CA + L G +H ++ ++ + ++ V L+
Sbjct: 481 EALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALV 539
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G + A+ +F + K+ L+SW +I G+ ++GF EA+ FN M+ + DE
Sbjct: 540 DMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDES 599
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SF+ L ACSH+GL+ +G ++F+ M+ V P++EH+ C+
Sbjct: 600 SFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACV 640
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 124/260 (47%), Gaps = 21/260 (8%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA----------- 91
D W +S + + G E+ F +M+ G + TF +L A
Sbjct: 158 DKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV 217
Query: 92 -------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
F SN +V++ L+ Y KFG ++ A +FD + D W +++NG V +
Sbjct: 218 HGYVLKLGFGSNTAVVNS-LIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGF 276
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
LE F M I GVE D T++SVL CAN+ L +G +H + K F + V NT
Sbjct: 277 SGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNT 336
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+YS+ G + A +VF +M T+VSW SII + G +A+ F+ MQ + D
Sbjct: 337 LLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPD 396
Query: 263 EVSFTGALTACSHAGLIEDG 282
+ T + AC+ + ++ G
Sbjct: 397 IYTVTSIVHACACSSSLDKG 416
>gi|255562850|ref|XP_002522430.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538315|gb|EEF39922.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 556
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 144/273 (52%), Gaps = 19/273 (6%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN- 97
K TI V WT I+ + +SG A F RM+ G +P+ TF ++SGCA+
Sbjct: 276 KMTIRNVVSWTMIITTYTQSGQEENALRAFIRMQEIGVSPNDFTFAAVISGCANLGKTEW 335
Query: 98 ----------------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
+ V+ +++ +Y+K G++ A++VF + D W+ ++ G+ +
Sbjct: 336 GEQLHGHMLCLGLMTFLSVANSVITLYSKCGQLKSASMVFKELTRRDVVSWSTIIAGYSQ 395
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
EEA EY M+ G +P+ LT+ SVL+VC N+ L G +H + + +
Sbjct: 396 GGCAEEAFEYLSRMRREGPKPNELTLASVLSVCGNMAILEQGKQLHAHALHVGLEQTAMI 455
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
+ L+++YS+ G I+ A ++F +VSW ++I G+A +G EA++ F + +
Sbjct: 456 QSALINMYSKCGSIKEASKIFDEAENNDIVSWTAMINGYAEHGCRQEAIDLFEKIPRIGL 515
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
K D V+F G LTACSHAGL++ G YF+ M KI
Sbjct: 516 KPDPVTFIGVLTACSHAGLVDLGFHYFNSMSKI 548
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 6/226 (2%)
Query: 61 ILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVV 120
IL AL+ + L N S+ + S +DF ++V V +AL+DMY KF ++ +
Sbjct: 117 ILSLALKICGLSL---NESYGESLHGYSVKSDFV-DSVFVGSALVDMYMKFDKIQQGCQI 172
Query: 121 FDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL 178
F M R WTA++ GFV Y +E L YF M S V D T L CAN+ L
Sbjct: 173 FHAMPIRNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSKVVCDSYTFAIALKACANLGAL 232
Query: 179 GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF 238
G +H K+ + + V NTL +Y++ G +++ ++F++M R +VSW II +
Sbjct: 233 DHGRQIHCQALKRSLEASSFVANTLATMYNKCGKLDYGSRLFEKMTIRNVVSWTMIITTY 292
Query: 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+G AL F MQ+ ++ +F ++ C++ G E G Q
Sbjct: 293 TQSGQEENALRAFIRMQEIGVSPNDFTFAAVISGCANLGKTEWGEQ 338
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 5/196 (2%)
Query: 94 PSN--NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEY 149
PSN N++ + L K G + A +FD M D WT +++G+V EAL
Sbjct: 42 PSNLINMLEINSKLKALVKTGCLQDARQMFDEMPHRDEISWTTIISGYVNAIDTTEALTL 101
Query: 150 FRVMQI-SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M + G+ D + L +C G +H Y K DF D+V V + L+D+Y
Sbjct: 102 FSKMWVVPGLRMDPFILSLALKICGLSLNESYGESLHGYSVKSDFVDSVFVGSALVDMYM 161
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+F I+ Q+F M R +VSW +II GF G+ E L YF+ M + D +F
Sbjct: 162 KFDKIQQGCQIFHAMPIRNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSKVVCDSYTFAI 221
Query: 269 ALTACSHAGLIEDGLQ 284
AL AC++ G ++ G Q
Sbjct: 222 ALKACANLGALDHGRQ 237
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 19/169 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W++ I+ + + GC EA +RMR G P+ +T ++LS C +
Sbjct: 384 VSWSTIIAGYSQGGCAEEAFEYLSRMRREGPKPNELTLASVLSVCGNMAILEQGKQLHAH 443
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
M+ +AL++MY+K G + A+ +FD D WTA++NG+ + +EA
Sbjct: 444 ALHVGLEQTAMIQSALINMYSKCGSIKEASKIFDEAENNDIVSWTAMINGYAEHGCRQEA 503
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195
++ F + G++PD +T I VL C++ + +G + K + D
Sbjct: 504 IDLFEKIPRIGLKPDPVTFIGVLTACSHAGLVDLGFHYFNSMSKIVYND 552
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 131/212 (61%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++V + ++L+DMYAK R++ + VF + R W +L+ G+V+ + EAL FR M
Sbjct: 275 SDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQM 334
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ V+P + SV+ CA++ TL +G +H YV + F N+ + + L+D+YS+ G I
Sbjct: 335 VTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNI 394
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ AR++F RM+ VSW +II+G A++G EA+ F M++ K ++V+F LTAC
Sbjct: 395 KAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTAC 454
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH GL+++ YF+ M K+Y ++ ++EH+ +
Sbjct: 455 SHVGLVDEAWGYFNSMTKVYGLNQELEHYAAV 486
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 123/295 (41%), Gaps = 57/295 (19%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-----DFPSN---- 96
+ W S I +A F MR G P H F ++L C F +
Sbjct: 71 LAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGF 130
Query: 97 --------NVMVSTALLDMYAK-------------------------------------F 111
++ AL++MYAK F
Sbjct: 131 IVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPF 190
Query: 112 GRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
G +D VF+VM D + ++ G+ + +E+AL R M + ++PD T+ SVL
Sbjct: 191 G-IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
+ + + G +H YV ++ +V + ++L+D+Y++ IE + +VF R++ R +
Sbjct: 250 PIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGI 309
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
SWNS++ G+ NG EAL F M K V+F+ + AC+H + G Q
Sbjct: 310 SWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ 364
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 47/198 (23%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W +++ F + F +AL F M+ SG PD+ SVL C + L G +H ++
Sbjct: 73 WKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIV 132
Query: 190 KQDFKDNVRVCNTLMDVYSR-------------------------------------FGC 212
+ ++ N LM++Y++ FG
Sbjct: 133 RLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFG- 191
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
I+ R+VF+ M ++ +VS+N+II G+A +G +AL M K D + + L
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251
Query: 273 CSHAGLIEDGLQYFDIMK 290
S +Y D++K
Sbjct: 252 FS---------EYVDVIK 260
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 129/211 (61%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+V+ + L+ + + G ++LA VFD M D WTA+++G+ K + EALE F M
Sbjct: 187 DVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMS 246
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+G+ PD +TI+SV++ C N+ + G+ +H Y+ + F V +CN L+++Y++ GC++
Sbjct: 247 DAGIRPDEVTIVSVISACTNLGDVETGMNVHSYINENGFGWMVSLCNALINMYAKCGCVD 306
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +VF M +++L++WNS+I A +G+ +A E F+ M D ++F L A +
Sbjct: 307 RAWRVFNNMKRKSLITWNSMISACANHGYAEDAFELFSCMLNSGIAPDGITFLALLIAYT 366
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H GL+++G + F IM++ Y + IEH+GCI
Sbjct: 367 HKGLVDEGYRLFQIMERDYGIEASIEHYGCI 397
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 39/211 (18%)
Query: 112 GRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT---II 166
G + A +FD M + F+ ++ G+ K + F M+ + V+PD T +I
Sbjct: 64 GDLPYAQRLFDQMPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLI 123
Query: 167 SVLNVCANVRTLGIGLW---MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
+ V L +H V K F ++ V N L+++Y+ G A +VF
Sbjct: 124 KARSRVHKVHNFPSTLECDEIHGAVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNET 183
Query: 224 HKRTLVSWNSIIV-------------------------------GFAVNGFVGEALEYFN 252
+VSW+ +++ G++ EALE F
Sbjct: 184 VGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFW 243
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
M + DEV+ ++AC++ G +E G+
Sbjct: 244 EMSDAGIRPDEVTIVSVISACTNLGDVETGM 274
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 153/311 (49%), Gaps = 53/311 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC----------------- 90
WT+ I + G + E+ +TRMR G P TF L C
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTI 169
Query: 91 ------ADFPSNNVMVS--------------------------TALLDMYAKFGRMDLAT 118
+D N M+ T L+ YAK+G M+ A+
Sbjct: 170 LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESAS 229
Query: 119 VVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR 176
+FD + D WTA++ G+ + +EALEYF+ MQ G+E D +T+ V++ CA +
Sbjct: 230 GLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLG 289
Query: 177 TLGIGLWMHRYVPKQDF--KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ W+ + F NV V + L+D+YS+ G + A +VF+ M +R + S++S+
Sbjct: 290 AVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSM 349
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I+G+A++G AL+ F+ M K + ++V+F G L+ACSHAGL+E G Q F M+K +
Sbjct: 350 ILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFG 409
Query: 295 VSPQIEHHGCI 305
V+P +H+ C+
Sbjct: 410 VAPSPDHYACM 420
>gi|354805199|gb|AER41617.1| pentatricopeptide [Oryza glumipatula]
Length = 520
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 147/287 (51%), Gaps = 27/287 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS------GCADFPSN--- 96
V W +S + G + E F MR G TF LLS C D +
Sbjct: 73 VVWNVMVSCYSSHGLVRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSSCYDHANLLLV 132
Query: 97 ----------------NVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFV 138
+V+V+TALLDMYAK G++ A+ VFD V+R W A++ +
Sbjct: 133 LGSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYG 192
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
K D +EA + F M G PD LT+ S+L+ CA++ +H Y ++ +D ++
Sbjct: 193 KHDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQ 252
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V N L+ Y + G ++ A++ F +H LV+W+S++ FA G A++ F+ M +
Sbjct: 253 VGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLSKSAIDLFDRMLQQG 312
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D ++F G L+ACSHAGLIEDG +YF +M + Y++ P +H C+
Sbjct: 313 IRADGIAFLGVLSACSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACL 359
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 100/212 (47%), Gaps = 21/212 (9%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++ V+TAL D YAK G +D A VFD +R W +++ + E + F M
Sbjct: 39 SDARVATALADAYAKSGLVDRARRVFDETPLRDQVVWNVMVSCYSSHGLVRECWDVFGSM 98
Query: 154 QISGVEPDYLTIISVLNVCANVRT--------LGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+ SG D T ++L+V A+ + L +G +H V + +V V L+D
Sbjct: 99 RRSGFPGDGFTFSALLSVRASSSSCYDHANLLLVLGSSVHGIVIRLGLHLDVVVATALLD 158
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + A +VF M R VSWN+IIV + + EA + F M + F DE++
Sbjct: 159 MYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELT 218
Query: 266 FTGALTACS-----------HAGLIEDGLQYF 286
L++C+ HA + GLQ F
Sbjct: 219 LASLLSSCADMAAANEATQLHAYTVRRGLQDF 250
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%)
Query: 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
A VR +H K + RV L D Y++ G ++ AR+VF R V WN
Sbjct: 17 AGVRGRPACAAVHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVVWN 76
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ ++ +G V E + F M++ F D +F+ L+
Sbjct: 77 VMVSCYSSHGLVRECWDVFGSMRRSGFPGDGFTFSALLS 115
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 130/212 (61%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++V + ++L+DMYAK R++ + VF + R W +L+ G+V+ + EAL FR M
Sbjct: 239 SDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQM 298
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ V P + SV+ CA++ TL +G +H YV + F N+ + + L+D+YS+ G I
Sbjct: 299 VSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNI 358
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ AR++F RM+ VSW +II+G A++G EA+ F M++ K ++V+F LTAC
Sbjct: 359 QAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTAC 418
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH GL+++ YF+ M K+Y ++ ++EH+ +
Sbjct: 419 SHVGLVDEAWGYFNSMTKVYGLNQELEHYAAV 450
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 120/258 (46%), Gaps = 19/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-----DFPSN---- 96
+ W S I A F MR G P H F ++L C F +
Sbjct: 71 LAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGF 130
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++ AL++MY+K +D VF++M D + ++ G+ + +E+A
Sbjct: 131 IVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDA 190
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L R M S ++PD T+ SVL + + + G +H YV ++ +V + ++L+D+
Sbjct: 191 LRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDM 250
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ IE + +VF +++R +SWNS++ G+ NG EAL F M + V+F
Sbjct: 251 YAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAF 310
Query: 267 TGALTACSHAGLIEDGLQ 284
+ + AC+H + G Q
Sbjct: 311 SSVIPACAHLATLHLGKQ 328
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 146/263 (55%), Gaps = 21/263 (7%)
Query: 63 EAALE-FTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTAL 104
EAA++ + +M YG P + TF +L CA + +V V AL
Sbjct: 158 EAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAAL 217
Query: 105 LDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+DMYAK G + A VFD ++R W ++L + + + + L M ++G+ P
Sbjct: 218 IDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTE 277
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T+++ ++ A+ L G +H +Q+F+ + +V L+D+Y++ G + AR +F+R
Sbjct: 278 ATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFER 337
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ + +VSWN++I G+A++G EAL+ F M + V K D ++F G L+ACSH GL+E+G
Sbjct: 338 LGVKRVVSWNAMITGYAMHGHATEALDLFEEMNR-VAKPDHITFVGVLSACSHGGLLEEG 396
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
+F+ M + Y++ P ++H+ C+
Sbjct: 397 WMFFETMIRDYKIDPTVQHYTCM 419
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
P Y S+L C + + G +H V F + + L+++Y + AR +
Sbjct: 73 PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLMQKGVFKTDEVSFTGALTACSHAGL 278
F R+ K + WN +I G+A NG A++ Y+ + G+ D +F L AC+
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVP-DNFTFPFVLKACAALSA 191
Query: 279 IEDG 282
IE G
Sbjct: 192 IEHG 195
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 133/264 (50%), Gaps = 26/264 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V W + IS + G +LEA F +M P +VM +L
Sbjct: 91 VLWNTMISGYIEMGNMLEARSLFDQM----------------------PCRDVMSWNTVL 128
Query: 106 DMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG-VEPDY 162
+ YA G M+ VFD M R W L+ G+ + E L F+ M G V P+
Sbjct: 129 EGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPND 188
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
T+ VL+ CA + G W+H+Y + K +V V N L+D+Y + G IE A +VF+
Sbjct: 189 ATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFK 248
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
+ +R L+SWN++I G A +G EAL F+ M+ D+V+F G L AC H GL+ED
Sbjct: 249 GIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVED 308
Query: 282 GLQYFDIMKKIYRVSPQIEHHGCI 305
GL YF+ M + + P+IEH GC+
Sbjct: 309 GLAYFNSMFTDFSIMPEIEHCGCV 332
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
WT+++NG++ A YF + E D + ++++ + + + +
Sbjct: 61 LWTSMINGYLLNKDLVSARRYFDLSP----ERDIVLWNTMISGYIEMGNMLEARSLFDQM 116
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
P +D V NT+++ Y+ G +E +VF M +R + SWN +I G+A NG V E L
Sbjct: 117 PCRD----VMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVL 172
Query: 249 EYFNLM-QKGVFKTDEVSFTGALTACSHAGLIEDG 282
F M +G ++ + T L+AC+ G + G
Sbjct: 173 GSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFG 207
>gi|115447921|ref|NP_001047740.1| Os02g0680500 [Oryza sativa Japonica Group]
gi|50253137|dbj|BAD29383.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537271|dbj|BAF09654.1| Os02g0680500 [Oryza sativa Japonica Group]
gi|222623447|gb|EEE57579.1| hypothetical protein OsJ_07931 [Oryza sativa Japonica Group]
Length = 418
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 131/218 (60%), Gaps = 6/218 (2%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
D PS + + +L+ MYA+F ++D A VVF M+ D W +++ K D+ +EALE
Sbjct: 52 DLPS--ISIENSLMGMYARFEQVDAAYVVFKGMQIKDIVSWNTMISCLAKSDHVDEALEL 109
Query: 150 FRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F ++ G+ PD++T++SV+ C+N L G +H Y+ K +V +CN L+ +Y+
Sbjct: 110 FSILHGGDGLVPDFVTVLSVVQACSNAGLLQQGQMLHGYIIKSGSLYDVSICNALISMYA 169
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFT 267
+ G I+F+ Q+F++M + +VSWNS+I + ++G +L FN +Q G + ++F
Sbjct: 170 KLGRIDFSEQIFEQMDIKDIVSWNSMINAYGIHGDGLSSLRIFNELQDDGTCSPNAITFV 229
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++ACSH+GL+ +G + F MK YR+ P ++H+ +
Sbjct: 230 SLISACSHSGLVSEGYRCFQSMKNDYRIEPSMDHYASV 267
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW 231
C +L G +H ++ K + ++ + N+LM +Y+RF ++ A VF+ M + +VSW
Sbjct: 31 CTVSGSLKYGKGIHAHLIKMNDLPSISIENSLMGMYARFEQVDAAYVVFKGMQIKDIVSW 90
Query: 232 NSIIVGFAVNGFVGEALEYFNLMQKG-VFKTDEVSFTGALTACSHAGLIEDG 282
N++I A + V EALE F+++ G D V+ + ACS+AGL++ G
Sbjct: 91 NTMISCLAKSDHVDEALELFSILHGGDGLVPDFVTVLSVVQACSNAGLLQQG 142
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 128/206 (62%), Gaps = 3/206 (1%)
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
+++ Y K GR++ A +F+VM D W+A++ G V+ + EAL F M+ ++P
Sbjct: 340 SMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKP 399
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D +T++SV++ C N+ L G +H Y+ + + + + +L+D+Y + GC+E A +VF
Sbjct: 400 DEVTLVSVISACTNLCALEQGKLVHEYIRQYQYNITIVLGTSLIDMYMKCGCMEAALEVF 459
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFTGALTACSHAGLI 279
+ ++ WN++IVG A+NG V +L+ F+ M+ G+ E++FTG L+AC H GL+
Sbjct: 460 DMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMETSGIAVPSEITFTGVLSACRHGGLV 519
Query: 280 EDGLQYFDIMKKIYRVSPQIEHHGCI 305
E+G Q+F +M+ Y++ P I H+GC+
Sbjct: 520 EEGRQFFKLMQNKYQIIPNIRHYGCM 545
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 109/255 (42%), Gaps = 29/255 (11%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
V W + ++ + R G + +A F RM P + +++
Sbjct: 172 AVSWNTILATYVRDGDVEQAVGVFARM----------------------PERSAAAVSSM 209
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+ ++A+ G ++ A VFD D WTA+++ F + D F EAL F M+ G D
Sbjct: 210 VALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERNDLFVEALAVFSDMREEGWPVDE 269
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
++SV+ CA + G H V + V V N L+ +YS + AR++F
Sbjct: 270 AVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHMYSSCLDVVAARRLFDS 329
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
SWNS+I G+ NG V +A FN+M D VS++ + C +
Sbjct: 330 SESLDHFSWNSMISGYLKNGRVEDAKALFNVMP----DKDNVSWSAMIAGCVQNNQSSEA 385
Query: 283 LQYFDIMKKIYRVSP 297
L FD M+ + + P
Sbjct: 386 LTVFDNMRA-HEIKP 399
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 22/212 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN-------- 97
V W++ I+ ++ EA F MR + P +T V+++S C + +
Sbjct: 367 VSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHEY 426
Query: 98 ---------VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+++ T+L+DMY K G M+ A VFD++ +G W A++ G +
Sbjct: 427 IRQYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRS 486
Query: 147 LEYFRVMQISGVE-PDYLTIISVLNVCANVRTLGIGLWMHRYVP-KQDFKDNVRVCNTLM 204
L+ F M+ SG+ P +T VL+ C + + G + + K N+R ++
Sbjct: 487 LDMFSEMETSGIAVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHYGCMV 546
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLV-SWNSII 235
D+ R G + A + Q M V +W +++
Sbjct: 547 DLLGRAGYVREAEDLIQSMPMSPDVPAWGALL 578
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAV 240
G +H + K F DN+ + N LM +YS GC+ AR+VF VSWN+I+ +
Sbjct: 125 GRQVHSHAVKHGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILATYVR 184
Query: 241 NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
+G V +A+ F M + VS AL A G++E+ FD
Sbjct: 185 DGDVEQAVGVFARMPE--RSAAAVSSMVALFA--RTGMVEEARGVFD 227
>gi|297606990|ref|NP_001059320.2| Os07g0259400 [Oryza sativa Japonica Group]
gi|255677648|dbj|BAF21234.2| Os07g0259400 [Oryza sativa Japonica Group]
Length = 521
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 147/288 (51%), Gaps = 28/288 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS-------GCADFPSN-- 96
V W +S + G + E F MR G TF LLS C D +
Sbjct: 73 VLWNVMVSCYSSHGLVRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSSSCYDHANLLL 132
Query: 97 -----------------NVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGF 137
+V+V+TALLDMYAK G++ A+ VFD V+R W A++ +
Sbjct: 133 VLGSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCY 192
Query: 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197
K D +EA + F M G PD LT+ S+L+ CA++ +H Y ++ +D +
Sbjct: 193 GKHDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFL 252
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
+V N L+ Y + G ++ A++ F +H LV+W+S++ FA G A++ F+ M +
Sbjct: 253 QVGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQ 312
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D ++F G L+ACSHAGLIEDG +YF +M + Y++ P +H C+
Sbjct: 313 GIRADGIAFLGVLSACSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACL 360
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 22/213 (10%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++ V+TAL D YAK G +D A VFD +R W +++ + E + F M
Sbjct: 39 SDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGLVRECWDVFGSM 98
Query: 154 QISGVEPDYLTIISVLNVCANVRT---------LGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+ SG D T ++L+V A+ + L +G +H V + +V V L+
Sbjct: 99 RRSGFPGDGFTFSALLSVRASSSSSCYDHANLLLVLGSSVHGIVIRLGLHLDVVVATALL 158
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G + A +VF M R VSWN+IIV + + EA + F M + F DE+
Sbjct: 159 DMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDEL 218
Query: 265 SFTGALTACS-----------HAGLIEDGLQYF 286
+ L++C+ HA + GLQ F
Sbjct: 219 TLASLLSSCADMAAANEATQLHAYTVRRGLQDF 251
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H K + RV L D Y++ G ++ AR+VF R V WN ++ ++ +G
Sbjct: 28 VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALT 271
V E + F M++ F D +F+ L+
Sbjct: 88 VRECWDVFGSMRRSGFPGDGFTFSALLS 115
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 145/262 (55%), Gaps = 21/262 (8%)
Query: 63 EAALEF-TRMRLYGTNPSHITFVTLLSGCADFPSN-----------------NVMVSTAL 104
E A EF RM++ G + T+ L+ C S+ +V V L
Sbjct: 133 EKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTL 192
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+ MY F ++ AT +F+ M W +++ V ++EA+E F M SG++PD
Sbjct: 193 VHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDD 252
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T + L+ CA + L IG +H + + V V N+L+D+Y++ G +E A ++F +
Sbjct: 253 ATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNK 312
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVSFTGALTACSHAGLIED 281
M R +VSWN++I+G A++G EALE F+ ++++ + +EV+F G L ACSH G++E+
Sbjct: 313 MKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEE 372
Query: 282 GLQYFDIMKKIYRVSPQIEHHG 303
G +YFDIM++ Y + P I+H+G
Sbjct: 373 GRRYFDIMRRDYNIQPTIKHYG 394
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 2/173 (1%)
Query: 112 GRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
G MD A VF + D W ++ G + E+A E+++ MQ+ G D T ++
Sbjct: 99 GSMDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLV 158
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
VC + + +G +H V K +++V V NTL+ +Y F IE A +F+ M K LV
Sbjct: 159 KVCGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLV 218
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+WN+II G EA+E F M + K D+ +F L+AC+ G ++ G
Sbjct: 219 AWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIG 271
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 28/222 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W + I + G EA F RM G P TFV LS CA
Sbjct: 218 VAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSC 277
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
N V VS +L+DMYAK G ++ A +F+ M+G + W ++ G + +EA
Sbjct: 278 IDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEA 337
Query: 147 LEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY--VPKQDF--KDNVRVCN 201
LE F ++++ P+ +T + VL C++ + G RY + ++D+ + ++
Sbjct: 338 LELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEG---RRYFDIMRRDYNIQPTIKHYG 394
Query: 202 TLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
+++D+ R G +E A ++ + M + + W +++ V+G
Sbjct: 395 SMVDILGRAGLVEEAYRLIKSMPIESNSIVWRTLLAACRVHG 436
>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 128/213 (60%), Gaps = 2/213 (0%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFD-VMRGCDF-WTALLNGFVKRDYFEEALEYFRV 152
S+N+ V L++MY G +D + VFD + C + A++ + + EAL FR
Sbjct: 144 SDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRE 203
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
+Q G++P +T++ VL+ CA + +L +G WMH YV K F V+V TL+D+Y++ G
Sbjct: 204 LQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGS 263
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ A VF+ M KR +W++IIV +A +G +A+ N M+K + DE++F G L A
Sbjct: 264 LDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYA 323
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
CSH GL+E+G +YF M Y + P I+H+GC+
Sbjct: 324 CSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCM 356
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 68/123 (55%)
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L + + V+ L G +H + K DN+ V TL+++Y+ G I+ +R+VF ++ + +
Sbjct: 119 LRLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCV 178
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
V++N+II+ A N EAL F +Q+ K +V+ L++C+ G ++ G +
Sbjct: 179 VAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEY 238
Query: 289 MKK 291
+KK
Sbjct: 239 VKK 241
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 147/296 (49%), Gaps = 32/296 (10%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN- 97
+S + V W I+ + + G +A + M G P +T + L+S CA N
Sbjct: 141 ESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNR 200
Query: 98 ----------------VMVSTALLDMYAKFGRMDLATVVFDVM---------------RG 126
+ ++ AL+DM++K G + A +FD + +
Sbjct: 201 GKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKD 260
Query: 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186
W A++ G V+ ++AL F+ MQ S +PD +T+I L+ C+ + L +G+W+HR
Sbjct: 261 VVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHR 320
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
Y+ K NV + +L+D+Y++ G I A VF + R +++ +II G A++G
Sbjct: 321 YIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDAST 380
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
A+ YFN M DE++F G L+AC H G+I+ G YF MK + ++PQ++H+
Sbjct: 381 AISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHY 436
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 126/272 (46%), Gaps = 35/272 (12%)
Query: 47 QWTSSISRHCRSGCILEAALEFTRMRLYG---TNPSHITFVTLLSGCADFPSNNV----- 98
W +I S +A L + +M G + P H T+ L CAD N++
Sbjct: 45 SWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMIL 104
Query: 99 ------------MVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFE 144
V A + M+A G M+ A VFD +R W L+NG+ K E
Sbjct: 105 GHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGE 164
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+A+E ++VM+ GV+PD +T+I +++ CA + L G + YV + + + N LM
Sbjct: 165 KAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALM 224
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVS-------------WNSIIVGFAVNGFVGEALEYF 251
D++S+ G I AR++F + KRT+VS WN++I G +AL F
Sbjct: 225 DMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALF 284
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
MQ DE++ L+ACS G ++ G+
Sbjct: 285 QEMQTSNTDPDEITMIHCLSACSQLGALDVGI 316
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGV---EPDYLTIISVLNVCANVRTLGIGLWMHR 186
W + GF + + ++A+ ++ M G PD+ T + VCA++R +G +
Sbjct: 46 WNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILG 105
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
+V K + V N + +++ G +E AR+VF R LVSWN +I G+ G +
Sbjct: 106 HVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEK 165
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
A+E + +M+ K D+V+ G +++C+ G + G ++++ +K
Sbjct: 166 AIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVK 209
>gi|218186297|gb|EEC68724.1| hypothetical protein OsI_37217 [Oryza sativa Indica Group]
Length = 387
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 128/215 (59%), Gaps = 5/215 (2%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P N+ A + + G MD A +F M R W +L++G+ K + +AL F
Sbjct: 73 MPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIF 132
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+ MQ +G++P LT++ VL CA + L +G +HR + + + V N L+D+Y++
Sbjct: 133 QEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKC 192
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G ++ A++VF RM R + WN++IVGF+V+G EALE F+ M+ + + V+F G L
Sbjct: 193 GMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSMK---IEPNPVTFLGVL 249
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
TACSH GL+ +G +YF+ M + YR+ P ++H+GC+
Sbjct: 250 TACSHGGLVNEGRKYFNSMIEDYRIVPYVKHYGCM 284
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 148/290 (51%), Gaps = 52/290 (17%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSN-----------------NVMVSTALLDMYAK 110
+T+M L G +P+ +F L S CA S+ +V TAL+DMYAK
Sbjct: 70 YTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAK 129
Query: 111 FGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM----------QISG- 157
G + LA FD M R W +++ G+ + E ALE FR+M ISG
Sbjct: 130 LGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGY 189
Query: 158 ---------------------VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
+ P+ +T+ SVL CAN+ L +G + Y + N
Sbjct: 190 AQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKN 249
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
+ V N L+++Y+R G I+ A VF+ + +R L SWNS+I+G AV+G EA+E F M
Sbjct: 250 LYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKML 309
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D+V+F G L AC+H G++ +G +F+ M++ + ++P++EH+GC+
Sbjct: 310 REGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCM 359
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 4/169 (2%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
+ L+ + + + M + G P+ + + + CA++ + G +H +
Sbjct: 49 LYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHF 108
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K F +V L+D+Y++ G + AR+ F M R + +WNS+I G+A G + AL
Sbjct: 109 VKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGAL 168
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSP 297
E F LM + S+T ++ + G L F +M++ + P
Sbjct: 169 ELFRLMP----ARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRP 213
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 146/265 (55%), Gaps = 26/265 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
V W S I+ + ++G I A+ F M P +++ A+
Sbjct: 175 VVSWNSMIAGYLKAGEIELASELFDEM----------------------PERDLVSCNAM 212
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+D Y K GR +LA VF+ M D WT++++ +V+ +AL+ FR M G+ PD
Sbjct: 213 IDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDG 272
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-DNVRVCNTLMDVYSRFGCIEFARQVFQ 221
I+SVL+ A++ + G W+H YV + + + + L+D+YS+ G IE A VF+
Sbjct: 273 PAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFR 332
Query: 222 RM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
+ H+R + WNS+I G A++G EAL+ F M++ + +E++F G L+ CSH GL+E
Sbjct: 333 SISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVE 392
Query: 281 DGLQYFDIMKKIYRVSPQIEHHGCI 305
+G YF+ M + Y++ P+I+H+GC+
Sbjct: 393 EGQFYFESMHEKYKIVPRIQHYGCM 417
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 14/185 (7%)
Query: 112 GRMDLATVVFDVMRGCD--FWTALLNGFVK-RDYFEEALEYFRVMQI----SGVEPDYLT 164
G +D A+ VF ++ + + AL+ GF + E + Y R++ SGVE +
Sbjct: 55 GGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVE---FS 111
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
I SVL C + G +H V K + V N+++ +Y FG IE AR+VF RM
Sbjct: 112 IPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMP 171
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
R +VSWNS+I G+ G + A E F+ M + D VS + G E +
Sbjct: 172 NRDVVSWNSMIAGYLKAGEIELASELFDEMP----ERDLVSCNAMIDGYGKCGRCELAEK 227
Query: 285 YFDIM 289
F+ M
Sbjct: 228 VFETM 232
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 143/282 (50%), Gaps = 19/282 (6%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP-------- 94
+ V WT+ I+ + + EA F M G +I F + +S CA
Sbjct: 479 EDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQI 538
Query: 95 ---------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYF 143
S ++ + AL+ +YA+ GR A + F+ + D W AL++GF + +
Sbjct: 539 HAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHC 598
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EEAL+ F M +GVE + T S ++ AN + G +H + K + N L
Sbjct: 599 EEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVL 658
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+ +YS+ G IE A++ F M ++ +VSWN++I G++ +G+ EA+ F M++ +
Sbjct: 659 ITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNH 718
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F G L+ACSH GL+ +GL YF M K + + P+ EH+ C+
Sbjct: 719 VTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCV 760
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 20/237 (8%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPS------------------NNVMVSTALLDMYA 109
F+ M P TF ++L C+ + ++ +V L+D+Y+
Sbjct: 99 FSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYS 158
Query: 110 KFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
K G +DLA +VF+ ++ W A+++G + +EA+ F M S V P S
Sbjct: 159 KNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSS 218
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
VL+ C + +G +H ++ K VCN L+ +YSR+G + A Q+F +MH+R
Sbjct: 219 VLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRD 278
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+S+NS+I G A GF AL+ F MQ K D V+ L+AC+ G G Q
Sbjct: 279 RISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQ 335
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 125/258 (48%), Gaps = 19/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
+ + S IS + G A F +M+L P +T +LLS CA
Sbjct: 280 ISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSY 339
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
S+++++ +LLD+Y K ++ A F + W +L + + E+
Sbjct: 340 VIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSES 399
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
F MQI G+ P+ T S+L C ++ L +G +H V K F+ NV VC+ L+D+
Sbjct: 400 YWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDM 459
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G ++ AR + QR+ + +VSW ++I G+ + EAL+ F M+ ++D + F
Sbjct: 460 YAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGF 519
Query: 267 TGALTACSHAGLIEDGLQ 284
+ A++AC+ + G Q
Sbjct: 520 SSAISACAGIQALNQGQQ 537
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 3/189 (1%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQIS 156
++ + L+D+Y G +D A +FD + + FW +++G + + + L F +M
Sbjct: 46 VLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITE 105
Query: 157 GVEPDYLTIISVLNVCANVRT-LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
V PD T SVL C+ + + +H + F + VCN L+D+YS+ G ++
Sbjct: 106 NVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDL 165
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
A+ VF+R+ + VSW ++I G + NG EA+ F M K F+ L+AC+
Sbjct: 166 AKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTK 225
Query: 276 AGLIEDGLQ 284
L + G Q
Sbjct: 226 IELFKLGEQ 234
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M+ G+ + T + + C N +L +H + K F + + L+D+Y G
Sbjct: 1 MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ A ++F + + WN +I G + L F+LM DE +F L A
Sbjct: 61 VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303
CS G F + ++I+ +I HHG
Sbjct: 121 CS------GGKAPFQVTEQIH---AKIIHHG 142
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 133/264 (50%), Gaps = 26/264 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V W + IS + G +LEA F +M P +VM +L
Sbjct: 38 VLWNTMISGYIEMGNMLEARSLFDQM----------------------PCRDVMSWNTVL 75
Query: 106 DMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG-VEPDY 162
+ YA G M+ VFD M R W L+ G+ + E L F+ M G V P+
Sbjct: 76 EGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPND 135
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
T+ VL+ CA + G W+H+Y + K +V V N L+D+Y + G IE A +VF+
Sbjct: 136 ATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFK 195
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
+ +R L+SWN++I G A +G EAL F+ M+ D+V+F G L AC H GL+ED
Sbjct: 196 GIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVED 255
Query: 282 GLQYFDIMKKIYRVSPQIEHHGCI 305
GL YF+ M + + P+IEH GC+
Sbjct: 256 GLAYFNSMFTDFSIMPEIEHCGCV 279
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
WT+++NG++ A YF + E D + ++++ + + + +
Sbjct: 8 LWTSMINGYLLNKDLVSARRYFDLSP----ERDIVLWNTMISGYIEMGNMLEARSLFDQM 63
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
P +D V NT+++ Y+ G +E +VF M +R + SWN +I G+A NG V E L
Sbjct: 64 PCRD----VMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVL 119
Query: 249 EYFNLM-QKGVFKTDEVSFTGALTACSHAGLIEDG 282
F M +G ++ + T L+AC+ G + G
Sbjct: 120 GSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFG 154
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 138/253 (54%), Gaps = 17/253 (6%)
Query: 70 RMRLYGTNPSHITFVTLLSGCADFPS--------------NNVMVSTALLDMYAKFGRMD 115
+M + G +P H TF +L CA + ++V V L+ Y G +D
Sbjct: 77 KMAMAGVSPDHFTFPFVLKACARLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLD 136
Query: 116 LATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVC 172
A VF+ M D W++++ F K + EAL F+ MQ+ G V+PD + ++SV++
Sbjct: 137 FALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAI 196
Query: 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
+ + L +G W+ ++ + + V + L+D++SR GCIE + +VF M +R +++W
Sbjct: 197 SILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWT 256
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
++I G AV+G EAL F M+ F+ D V+FTG L ACSH GL+ +G F+ ++
Sbjct: 257 ALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNE 316
Query: 293 YRVSPQIEHHGCI 305
Y + P EH+GC+
Sbjct: 317 YGMEPLPEHYGCM 329
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 148/277 (53%), Gaps = 19/277 (6%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---------DFPSNNV 98
W + I + S + A + M L G +P+ TF +L+ C + S V
Sbjct: 35 WNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNACCKLLRLCEGQELHSQIV 94
Query: 99 MVS--------TALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
L+ +YA G MD A V+FD M D W+ +++G+ + E L+
Sbjct: 95 KAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQAVETLK 154
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
R MQ V D T+ SV+ VC ++ L +G W+H Y+ K+ K +V + L+ +YS
Sbjct: 155 LLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYS 214
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G ++ A +VFQ M +R + +W+ +I G+A++G +AL+ F+ M++ + V+FT
Sbjct: 215 KCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTS 274
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+A SH+GL+E G Q F+ M Y+++PQI+H+GC+
Sbjct: 275 VLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCM 311
>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
Length = 650
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 144/278 (51%), Gaps = 21/278 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEF-TRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V WT+ ++ + E AL F M G P+ TF ++L C P
Sbjct: 147 VTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACGT-PGVLAALHAST 205
Query: 96 ------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEAL 147
++V V ++L+D Y K G +D VFD M R W +++ GF + A+
Sbjct: 206 VKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAI 265
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
E F M+ +G + T+ SVL C + L G +H +V K ++ ++ + N L+D+Y
Sbjct: 266 ELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YERDLILHNALLDMY 323
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
+ G +E A +F RM +R ++SW+++I G A NG EAL F+LM+ + ++
Sbjct: 324 CKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMV 383
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSHAGL+EDG YF MKK++ + P+ EHH C+
Sbjct: 384 GVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCM 421
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 102/208 (49%), Gaps = 6/208 (2%)
Query: 80 HITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGF 137
H+ LS + + VS +L+ MYAKFG +D A +FD M R WT ++
Sbjct: 97 HVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAAL 156
Query: 138 VKRD-YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
D EEAL + M GV P+ T SVL C T G+ +H K +
Sbjct: 157 ANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACG---TPGVLAALHASTVKVGLDSD 213
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
V V ++L+D Y + G ++ R+VF M R LV WNSII GFA +G A+E F M+
Sbjct: 214 VFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKD 273
Query: 257 GVFKTDEVSFTGALTACSHAGLIEDGLQ 284
F ++ + T L AC+ ++E G Q
Sbjct: 274 AGFSANQGTLTSVLRACTGMVMLEAGRQ 301
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQD--------FKDNVRVCNTLMDVYSRFGC 212
D +++ ++ +C T G G +HR+V + V N+L+ +Y++FG
Sbjct: 71 DPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGL 130
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFA-VNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ A ++F RM +R +V+W +++ A +G EAL + M + + +F+ L
Sbjct: 131 LDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLG 190
Query: 272 ACSHAGLI 279
AC G++
Sbjct: 191 ACGTPGVL 198
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 144/286 (50%), Gaps = 26/286 (9%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH----ITFVTLLSGCA--- 91
K +I T V W I RSG T R + PS +T+ ++ G A
Sbjct: 185 KMSIRTAVTWIEMIDGFARSGDTE------TARRFFDDVPSELRNVVTWTVMVDGYARNA 238
Query: 92 ----------DFPSNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVK 139
P N ++++ Y K G + A +FD +R W +L++G+ +
Sbjct: 239 EMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQ 298
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
+ EEALE F MQ G EPD +TI SVL+ C+ + L G +H + + K N V
Sbjct: 299 NGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFV 358
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
N L+D+Y++ G + AR +F+ M R WNS+I GFA++G EALE+F M+
Sbjct: 359 LNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHE 418
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
DE++F L+AC+H G + GL+ F M+K Y ++ I+H+GC+
Sbjct: 419 GPDEITFLSVLSACAHGGFVNAGLEIFSRMEK-YGLTTGIKHYGCL 463
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 137/327 (41%), Gaps = 57/327 (17%)
Query: 16 PHQQNRNQNLKKR----PQISIQTNN---SKSTIDTTVQWTSSISRHCRSGCILEAALEF 68
P QN QN + + P+ Q ++ K T + W I + G EA L +
Sbjct: 25 PKPQNERQNHQTQSPSLPKSLKQGSDFCPGKGTPSLS-NWCHLIRSYLSQGAPREALLVY 83
Query: 69 TRMR-----LYGTNPSHITFVTLLS--------------GCADFPSNNVMVSTALLDMYA 109
T +R L G P + LS DF +VM+ T+L+ MYA
Sbjct: 84 TGLRRKGVYLLGVAPLVLKACASLSIVKHGKALHAESIKNGVDF---DVMIGTSLVCMYA 140
Query: 110 KFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQI----SGVE---- 159
K G + + VFD M R W A++ G++ + A+ F M I + +E
Sbjct: 141 KCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDG 200
Query: 160 -----------------PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
P L + V + + R V + + N ++
Sbjct: 201 FARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSS 260
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
++ Y + G ++ AR +F R+ R LV+WNS+I G+A NGF EALE F MQ F+ D
Sbjct: 261 MISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPD 320
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIM 289
EV+ L+ACS GL++ G + +M
Sbjct: 321 EVTIASVLSACSQLGLLDAGKKIHHMM 347
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 24/212 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W S IS + ++G EA F +M+ G P +T ++LS C+
Sbjct: 287 VNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHM 346
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKRDYFE 144
N V L+DMYAK G + A ++F+ M R C W ++++GF +
Sbjct: 347 MNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRAC--WNSMISGFAIHGQSK 404
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EALE+F M+ S PD +T +SVL+ CA+ + GL + + K ++ L+
Sbjct: 405 EALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLI 464
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
D+ R G I+ A + +RM K V W +++
Sbjct: 465 DLLGRAGRIKEAYDLIKRMPVKPNDVVWGALL 496
>gi|356554965|ref|XP_003545811.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 517
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 125/202 (61%), Gaps = 6/202 (2%)
Query: 110 KFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM-QISGVEPDYLTII 166
K G ++LA VF+ M R WT +++G+ +R+ +AL FR M ++ G+EP +T++
Sbjct: 215 KLGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQPIKALTLFRKMIEVDGIEPTEVTLL 274
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRM-- 223
++ AN+ + I +H YV K+ F +VR+ N L+D+Y++ GCI + FQ +
Sbjct: 275 TIFPAIANIGCIKICQSVHGYVEKRGFNAFDVRITNALLDLYAKCGCIASVSRFFQEIPD 334
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
+R LVSW S I GFA+NG EALE F M+K + + V+F G L+ACSH GL+E+G+
Sbjct: 335 QRRNLVSWTSTISGFAMNGMGREALESFESMEKAGLRPNHVTFLGVLSACSHGGLVEEGI 394
Query: 284 QYFDIMKKIYRVSPQIEHHGCI 305
+F M K + + P I+H+GC+
Sbjct: 395 NFFVKMVKDWCLVPDIKHYGCV 416
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 142 YFEEALEYFRVMQ-----ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
Y EAL +F Q ++ D + + + AN G +H + K F+
Sbjct: 112 YPHEALHFFTYTQHCHIFLTYPSLDTFSFAFLCHASANPNYTHFGTQLHALIFKVGFQFQ 171
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
V V L+ +YS G + A QVF M R LVSWN I G G V A FN M
Sbjct: 172 VYVQTRLLQMYSSSGLLVEAAQVFYEMQHRNLVSWNVFITGLIKLGEVELACSVFNQM 229
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA 91
V WTS+IS +G EA F M G P+H+TF+ +LS C+
Sbjct: 340 VSWTSTISGFAMNGMGREALESFESMEKAGLRPNHVTFLGVLSACS 385
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 128/221 (57%), Gaps = 12/221 (5%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ V +L+D Y K G + A +FD M R W +L+G+VK A E F M
Sbjct: 149 DIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMP 208
Query: 155 I----------SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+G++ D T+IS+L+ CA LG+G +H + + FK + V N L+
Sbjct: 209 ARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALI 268
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G +E A +F M ++ +VSWN+II G A++G +AL+ F+ M+ F D+V
Sbjct: 269 DMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKV 328
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L AC+HAG +++GL YF M++ Y V P++EH+GC+
Sbjct: 329 TFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCM 369
>gi|24059871|dbj|BAC21338.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
gi|50509918|dbj|BAD30218.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
Length = 459
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 147/288 (51%), Gaps = 28/288 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS-------GCADFPSN-- 96
V W +S + G + E F MR G TF LLS C D +
Sbjct: 73 VLWNVMVSCYSSHGLVRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSSSCYDHANLLL 132
Query: 97 -----------------NVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGF 137
+V+V+TALLDMYAK G++ A+ VFD V+R W A++ +
Sbjct: 133 VLGSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCY 192
Query: 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197
K D +EA + F M G PD LT+ S+L+ CA++ +H Y ++ +D +
Sbjct: 193 GKHDRGKEAFDLFVSMMRHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGLQDFL 252
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
+V N L+ Y + G ++ A++ F +H LV+W+S++ FA G A++ F+ M +
Sbjct: 253 QVGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQ 312
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D ++F G L+ACSHAGLIEDG +YF +M + Y++ P +H C+
Sbjct: 313 GIRADGIAFLGVLSACSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACL 360
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 22/213 (10%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++ V+TAL D YAK G +D A VFD +R W +++ + E + F M
Sbjct: 39 SDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGLVRECWDVFGSM 98
Query: 154 QISGVEPDYLTIISVLNVCANVRT---------LGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+ SG D T ++L+V A+ + L +G +H V + +V V L+
Sbjct: 99 RRSGFPGDGFTFSALLSVRASSSSSCYDHANLLLVLGSSVHGIVIRLGLHLDVVVATALL 158
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G + A +VF M R VSWN+IIV + + EA + F M + F DE+
Sbjct: 159 DMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDEL 218
Query: 265 SFTGALTACS-----------HAGLIEDGLQYF 286
+ L++C+ HA + GLQ F
Sbjct: 219 TLASLLSSCADMAAANEATQLHAYTVRRGLQDF 251
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H K + RV L D Y++ G ++ AR+VF R V WN ++ ++ +G
Sbjct: 28 VHPLAVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGL 87
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALT 271
V E + F M++ F D +F+ L+
Sbjct: 88 VRECWDVFGSMRRSGFPGDGFTFSALLS 115
>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
Length = 639
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 145/282 (51%), Gaps = 21/282 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEF-TRMRLYGTNPSHITFVTLLSGCADFPS----- 95
+ V WT+ ++ + + AL F MR G P+ TF ++L C P
Sbjct: 132 VRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTT-PGMLTAV 190
Query: 96 ----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
++V V ++L+D Y K G +D VFD M R W +++ GF +
Sbjct: 191 HASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDG 250
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
A+E F M+ +G + T+ SVL C + L G +H +V K D ++ + N L
Sbjct: 251 VGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLKYD--RDLILHNAL 308
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y + G +E A +F RM +R ++SW++++ G A NG EAL F+LM+ +
Sbjct: 309 LDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNH 368
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+ G L ACSHAGL+EDG YF MK+++ + P+ EHH C+
Sbjct: 369 VTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCM 410
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 99/193 (51%), Gaps = 6/193 (3%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRD-YFEEALEYFR 151
+ + VS +L MYAKFG +D A +FD M R WT ++ D +EAL +
Sbjct: 101 AGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLV 160
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M+ GV P+ T SVL C T G+ +H K +V V ++L+D Y + G
Sbjct: 161 AMRRDGVAPNAYTFSSVLGACT---TPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLG 217
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ R+VF M R LV WNSII GFA +G A+E F M+ F +++ + T L
Sbjct: 218 DLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLR 277
Query: 272 ACSHAGLIEDGLQ 284
AC+ ++E G Q
Sbjct: 278 ACTGMVMLEAGRQ 290
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-----DFKDNVRVCNTLMDVYSRFGCIEF 215
D +++ ++ +C T G +HR+V D + V N+L +Y++FG ++
Sbjct: 63 DPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDD 122
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFA-VNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A ++F M R +V+W +++ A +G EAL + M++ + +F+ L AC+
Sbjct: 123 ALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACT 182
Query: 275 HAGLI 279
G++
Sbjct: 183 TPGML 187
>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
Length = 528
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 130/228 (57%), Gaps = 14/228 (6%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ N++V T L+ Y + G ++ +VFD M R W A+++G + +F E +
Sbjct: 161 EMSERNIVVFTVLVSGYLRVGDVEKGLMVFDEMVDRDVPAWNAVISGCTQNGFFSEGIRL 220
Query: 150 FRVMQIS----------GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
FR M + G +P+ +T++ VL+ C + L +G W+H YV + F + V
Sbjct: 221 FREMVFAAGLGEGGFCKGNKPNQVTVVCVLSACGHGGMLQLGKWIHGYVYRHGFVVDSFV 280
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK--G 257
N L+D+Y + G +E AR+VF+ ++ L SWNS+I +A++G +A+ +F M + G
Sbjct: 281 SNALVDMYGKCGSLELARKVFEMDQRKGLTSWNSMINCYALHGKCEDAITFFEKMVECGG 340
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ DEV+F G L AC+H GL+E G YF++M K Y + PQI H+GC+
Sbjct: 341 GVRPDEVTFIGLLNACTHGGLVEQGCGYFEMMIKEYGIEPQIAHYGCL 388
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 144/280 (51%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WT+ I R+G EA + F M+ G + +T V++L
Sbjct: 170 VTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGL 229
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+V + ++L+DMY K D A VFD M R WTAL+ G+V+ F++
Sbjct: 230 YLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDK 289
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+ F M S V P+ T+ SVL+ CA+V L G +H Y+ K + N TL+D
Sbjct: 290 GMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLID 349
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y + GC+E A VF+R+H++ + +W ++I GFA +G+ +A + F M +EV+
Sbjct: 350 LYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVT 409
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L+AC+H GL+E+G + F MK + + + +H+ C+
Sbjct: 410 FMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACM 449
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 129 FWTALLNGFVKRDYFEEALEY--FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186
W +L+ F L + +R M+ +GV P T +L +R H
Sbjct: 69 LWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHA 127
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
++ K + V N+L+ YS G +FA ++F + +V+W ++I GF NG E
Sbjct: 128 HIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASE 187
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
A+ YF M+K +E++ L A AG +ED
Sbjct: 188 AMVYFVEMKKTGVAANEMTVVSVLKA---AGKVED 219
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 154/281 (54%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC---ADFPS------- 95
V WT+ IS + + G EA F M T P+H TF T+L+ C F +
Sbjct: 157 VSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSI 216
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+++ V ++LLDMYAK GR+ A VF + R TA+++G+ + EEA
Sbjct: 217 AIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEA 276
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ FR +QI G+ + +T SVL + + L G +H +V + V + N+L+D+
Sbjct: 277 LKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDM 336
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVS 265
YS+ G + +AR++F M +RT +SWN+++VG++ +G E LE F LM ++ K D ++
Sbjct: 337 YSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSIT 396
Query: 266 FTGALTACSHAGLIEDGLQ-YFDIMKKIYRVSPQIEHHGCI 305
+ L+ CSH L + GL+ +++++ + P I H+GC+
Sbjct: 397 YLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCV 437
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 70/139 (50%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M I G E + ++LN C + R + G +H ++ K + +V + L+ +Y++ C
Sbjct: 81 MAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDC 140
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+ AR++F M ++ +VSW ++I ++ GF EAL F M + + + +F LT+
Sbjct: 141 LGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTS 200
Query: 273 CSHAGLIEDGLQYFDIMKK 291
C + E G Q I K
Sbjct: 201 CYGSLGFETGRQIHSIAIK 219
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 148/290 (51%), Gaps = 52/290 (17%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSN-----------------NVMVSTALLDMYAK 110
+T+M L G +P+ +F L S CA S+ +V TAL+DMYAK
Sbjct: 70 YTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAK 129
Query: 111 FGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM----------QISG- 157
G + LA FD M R W +++ G+ + E ALE FR+M ISG
Sbjct: 130 LGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGY 189
Query: 158 ---------------------VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
+ P+ +T+ SVL CAN+ L +G + Y + N
Sbjct: 190 AQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKN 249
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
+ V N L+++Y+R G I+ A VF+ + +R L SWNS+I+G AV+G EA+E F M
Sbjct: 250 LYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKML 309
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D+V+F G L AC+H G++ +G +F+ M++ + ++P++EH+GC+
Sbjct: 310 REGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCM 359
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 4/169 (2%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
+ L+ + + + M + G P+ + + + CA++ + G +H +
Sbjct: 49 LYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHF 108
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K F +V L+D+Y++ G + AR+ F M R + +WNS+I G+A G + AL
Sbjct: 109 VKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGAL 168
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSP 297
E F LM + S+T ++ + G L F +M++ + P
Sbjct: 169 ELFRLMP----ARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRP 213
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 151/281 (53%), Gaps = 24/281 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS-----GCADFPSN---- 96
V WT I+ R+G EA F++M + P+ T+V L GC
Sbjct: 173 VSWTGIITGFTRTGLYKEALDTFSKMDV---EPNLATYVCALVSSGRVGCLSLGKGIHGL 229
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
++ AL+DMY K ++ A VF ++ D W ++++G V + EA
Sbjct: 230 ILKRASLISLETGNALIDMYVKCEQLSDAMTVFGELQKKDKVSWNSMISGLVHCERSNEA 289
Query: 147 LEYFRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+E F +MQ S G++PD + SVL+ CA++ + G W+H YV K + + ++D
Sbjct: 290 IELFSMMQTSSGIKPDGHILTSVLSACASLGAVDYGRWVHEYVLSAGIKWDTHIGTAIVD 349
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G IE A ++F + ++ + +WN+++ G A++G E+L YF M K FK + V+
Sbjct: 350 MYAKCGYIETALKIFNGIRRKNVFTWNALLGGLAIHGHGHESLRYFEEMVKLGFKPNLVT 409
Query: 266 FTGALTACSHAGLIEDGLQYFDIMK-KIYRVSPQIEHHGCI 305
F L AC H GL+++G +YF MK + Y +SP++EH+GC+
Sbjct: 410 FLAILNACCHTGLVDEGRRYFHKMKTREYNLSPKLEHYGCL 450
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 20/199 (10%)
Query: 84 VTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYF 143
VT L ADF + + ++ ++ + + F + LL+ + D
Sbjct: 45 VTFLGKSADFATYSSVILHSIRSVLSSFS-----------------YNTLLSSYAVCDKP 87
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
+ +RV +G PD T V C + G +H V K F D++ V N+L
Sbjct: 88 RMTIFVYRVFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGTVTKMGFYDDIYVQNSL 147
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+ Y G A +VF +M R +VSW II GF G EAL+ F+ M + +
Sbjct: 148 VHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMD---VEPNL 204
Query: 264 VSFTGALTACSHAGLIEDG 282
++ AL + G + G
Sbjct: 205 ATYVCALVSSGRVGCLSLG 223
>gi|354805138|gb|AER41559.1| pentatricopeptide [Oryza australiensis]
Length = 510
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 144/287 (50%), Gaps = 27/287 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS------GCADFPSN--- 96
V W +S + G + E F MR G TF LLS C D +
Sbjct: 74 VLWNVMVSCYSSQGLVRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSSCYDHANLLLL 133
Query: 97 ----------------NVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFV 138
+V+V+TALLDMYAK G++ A+ VFD V+R W A++ +
Sbjct: 134 LGSSAHGIVIRLGLQLDVVVATALLDMYAKCGQVAEASSVFDAMVLRNTISWNAIIVCYG 193
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
K +EALE F M G PD LT+ S+L+ CA++ +H Y K+ +D ++
Sbjct: 194 KHGRGKEALEVFVSMMRDGCCPDELTLASLLSSCADMAVANEATQLHSYTVKRGLQDFLQ 253
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V N L+ Y + G ++ A + F +H LV+W+S+I FA G A+ F+ M +
Sbjct: 254 VSNALIMAYGKNGFVQEATRTFGMIHNPDLVTWSSMISCFAYLGLAKSAINLFDRMLQQG 313
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D +F G L+AC HAGL+EDG +YF +MK+ Y++ P +H C+
Sbjct: 314 IQADGTAFLGVLSACCHAGLVEDGFKYFLLMKRDYKIDPTPQHLACL 360
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 10/199 (5%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++ V+TAL D YAK G + A VFD +R W +++ + + E + F M
Sbjct: 40 SDARVATALADAYAKSGLVHHARRVFDETPLRDQVLWNVMVSCYSSQGLVRECWDVFGSM 99
Query: 154 QISGVEPDYLTIISVLNVCANVRT--------LGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+ SG D T ++L+V A+ + L +G H V + + +V V L+D
Sbjct: 100 RRSGFPGDGFTFSALLSVRASSSSCYDHANLLLLLGSSAHGIVIRLGLQLDVVVATALLD 159
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + A VF M R +SWN+IIV + +G EALE F M + DE++
Sbjct: 160 MYAKCGQVAEASSVFDAMVLRNTISWNAIIVCYGKHGRGKEALEVFVSMMRDGCCPDELT 219
Query: 266 FTGALTACSHAGLIEDGLQ 284
L++C+ + + Q
Sbjct: 220 LASLLSSCADMAVANEATQ 238
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H + K + + RV L D Y++ G + AR+VF R V WN ++ ++ G
Sbjct: 29 IHPFAVKSGSRSDARVATALADAYAKSGLVHHARRVFDETPLRDQVLWNVMVSCYSSQGL 88
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALT 271
V E + F M++ F D +F+ L+
Sbjct: 89 VRECWDVFGSMRRSGFPGDGFTFSALLS 116
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 22/200 (11%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN------- 97
T+ W + I + + G EA F M G P +T +LLS CAD N
Sbjct: 182 TISWNAIIVCYGKHGRGKEALEVFVSMMRDGCCPDELTLASLLSSCADMAVANEATQLHS 241
Query: 98 ----------VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ VS AL+ Y K G + AT F ++ D W+++++ F +
Sbjct: 242 YTVKRGLQDFLQVSNALIMAYGKNGFVQEATRTFGMIHNPDLVTWSSMISCFAYLGLAKS 301
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK--DNVRVCNTL 203
A+ F M G++ D + VL+ C + + G + + + K+D+K + L
Sbjct: 302 AINLFDRMLQQGIQADGTAFLGVLSACCHAGLVEDG-FKYFLLMKRDYKIDPTPQHLACL 360
Query: 204 MDVYSRFGCIEFARQVFQRM 223
+D+ R G I A + M
Sbjct: 361 VDLLGRAGRIRDAYEFLVNM 380
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 133/222 (59%), Gaps = 11/222 (4%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P +V+ TA+L YAK G++D A +FD + D W A+++G+ + EAL FR
Sbjct: 184 PDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFR 243
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP----KQDFKDNVRVCNTLMDVY 207
M SGVEPD ++++ L+ A + T G W+H +V + + N RV L+D+Y
Sbjct: 244 QMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMY 303
Query: 208 SRFGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDE 263
+ G +E A VF+ + R +V+WN++I G+A++G EALE F L +G++ TD
Sbjct: 304 YKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTD- 362
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++F G L ACSH+GL+++G F M++ Y + P++EH+GC+
Sbjct: 363 ITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCM 404
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 43/213 (20%)
Query: 108 YAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYFEEALEYFRVMQIS--GVEPD 161
YA GR+DLA + R D F+T+ ++ R AL M +S G+ P
Sbjct: 66 YAASGRLDLAVALL--RRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPT 123
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV--------------- 206
T+ + L C L +G +H Y K V L+ +
Sbjct: 124 AHTLSASLPACG---CLAVGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFD 180
Query: 207 -----------------YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
Y++ G ++ AR +F + ++ LV WN+++ G+ +G EAL
Sbjct: 181 GMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALR 240
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
F M + + DEVS AL+A + G E G
Sbjct: 241 LFRQMLRSGVEPDEVSVVLALSAVAQLGTAESG 273
>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
Length = 735
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 143/280 (51%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
++ W++ I+ + ++G A F++M G P+ TFV +L+ +D +
Sbjct: 286 SITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHG 345
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
+ V +AL+DMYAK G + A FD + D WTA+++G V+ EE
Sbjct: 346 LMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEE 405
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL + M G+ P TI S L CA + L G +H + K V + L
Sbjct: 406 ALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALST 465
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ G +E VF+R+ R +++WNSII GF+ NG AL+ F M+ D ++
Sbjct: 466 MYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNIT 525
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L ACSH GL++ G +YF +M K Y ++P+++H+ C+
Sbjct: 526 FINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACM 565
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 3/200 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+NV V T+LL+MY K G + A VFD M R W+ ++ G+ EEA + FR+M
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210
Query: 154 -QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
+ E +VL+ + L +G MH + K D V V N+L+ +Y++ GC
Sbjct: 211 LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGC 270
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+ A VF+ +R ++W+++I G+A NG A+ F+ M F E +F G L A
Sbjct: 271 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNA 330
Query: 273 CSHAGLIEDGLQYFDIMKKI 292
S G + G Q +M K+
Sbjct: 331 SSDLGALAVGKQAHGLMVKL 350
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 138/263 (52%), Gaps = 19/263 (7%)
Query: 62 LEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTAL 104
L A L +++ G P TF +LL CA + +N+ V L
Sbjct: 117 LRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTL 176
Query: 105 LDMYAKFGRMDLATVVFD-VMRGCDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
++MY +D A VFD + C + A++ + EAL FR +Q SG++P
Sbjct: 177 INMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTD 236
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
+T++ L+ CA + L +G W+H YV K F V+V L+D+Y++ G ++ A VF+
Sbjct: 237 VTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKD 296
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M +R +W+++IV +A +G +A+ M+K + DE++F G L ACSH GL+E+G
Sbjct: 297 MPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEG 356
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
+YF M Y + P I+H+GC+
Sbjct: 357 YEYFHSMTHEYGIVPSIKHYGCM 379
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 138/247 (55%), Gaps = 20/247 (8%)
Query: 78 PSHITFVTLLSGCAD--------------FPS---NNVMVSTALLDMYAKFGRMDLATVV 120
P H T+ +L C+ F S ++ ++ AL+ +Y+ G +LA V
Sbjct: 99 PDHFTYPFVLKACSKSGHARFGKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKV 158
Query: 121 FDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL 178
FD M D WT++++GFV D EA+ F M +G+EP+ +T+ SVL CA+ L
Sbjct: 159 FDKMPDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGAL 218
Query: 179 GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF 238
G +H +V +++F N V L+D+Y++ GCI+ A +VF ++ + W +II G
Sbjct: 219 NTGERIHSFVKEKNFSSNANVSTALIDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGL 278
Query: 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ 298
A +G +A+E+F M+K K DE + T L+A +AGL+ +GL +F +KK +++ P
Sbjct: 279 ASHGLCMKAIEFFENMKKSDVKMDERAITAVLSAYRNAGLVSEGLLFFRRLKK-HKIKPT 337
Query: 299 IEHHGCI 305
I+H+GC+
Sbjct: 338 IQHYGCV 344
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 20/219 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WTS I + +EA FT M G P+ +T ++L CAD
Sbjct: 168 VSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSF 227
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
S+N VSTAL+DMYAK G +D A VFD D WTA++ G +A
Sbjct: 228 VKEKNFSSNANVSTALIDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHGLCMKA 287
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+E+F M+ S V+ D I +VL+ N + GL R + K K ++ ++D+
Sbjct: 288 IEFFENMKKSDVKMDERAITAVLSAYRNAGLVSEGLLFFRRLKKHKIKPTIQHYGCVVDM 347
Query: 207 YSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV 244
+R G ++ A + ++M + V W ++I G + G V
Sbjct: 348 LTRAGRLKDAEEFIRKMPIEPDAVLWRTLIWGCKILGDV 386
>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
gi|194688792|gb|ACF78480.1| unknown [Zea mays]
Length = 706
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 156/300 (52%), Gaps = 19/300 (6%)
Query: 25 LKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFV 84
+K R S + K + W + +S + + E F RM+ P T
Sbjct: 262 IKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLA 321
Query: 85 TLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGC 127
+LS C+ + N++ V++ L+D+Y+K G++ +A ++F++M
Sbjct: 322 VILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTER 381
Query: 128 DF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185
D W ++++G EEA ++ + M+ +G+ P + S++N+CA + ++ G MH
Sbjct: 382 DVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMH 441
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
V K + NV V +L+D+Y++ G ++ AR F M + LV+WN +I G+A NGF
Sbjct: 442 AQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGE 501
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+A+E F M K D V+F LT CSH+GL+++ + +F+ M+ Y ++P +EH+ C+
Sbjct: 502 KAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCL 561
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 124/274 (45%), Gaps = 27/274 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V W + I+ RSG EA + M G P++ T ++LS C +
Sbjct: 6 AVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHG 65
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
+ V LL MY K G + A +FD M + +TA++ G + ++
Sbjct: 66 LAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDD 125
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANV--------RTLGIGLWMHRYVPKQDFKDNV 197
AL F M +G+ D + + SVL CA R + + +H V ++ F +
Sbjct: 126 ALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQ 185
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
V N+L+D+Y++ ++ A +VF+ + ++VSWN +I G+ G A+E MQ+
Sbjct: 186 HVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQES 245
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
F+ +EV+++ L +C A + FD + K
Sbjct: 246 GFEPNEVTYSNMLASCIKARDVPSARAMFDKIPK 279
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
M R VSWN++I A +G GEALE Y ++Q+G+ T+ + L+AC ++D
Sbjct: 1 MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTN-FTLASVLSACGAVAALDD 59
Query: 282 GLQYFDIMKKI 292
G + + K+
Sbjct: 60 GRRCHGLAVKV 70
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 131/211 (62%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+V+V T L+ Y+ G + +A VFD M D W A+++ F ++ +EAL+ + M+
Sbjct: 139 DVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMR 198
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V+ D T++ +++ CA++ L IG+ MHR+ + ++ V N L+D+Y++ G ++
Sbjct: 199 SENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLD 258
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +F RM ++ + +WNS+IVG+ V+G EA+ F M + + + V+F G L CS
Sbjct: 259 QAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCS 318
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H GL+++G++YF++M +R+ P+++H+GC+
Sbjct: 319 HQGLVQEGVKYFNLMSSKFRLKPEVKHYGCL 349
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 21/212 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV------- 98
V W + IS + G EA + +MR + T V L+S CA + N+
Sbjct: 172 VAWNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRF 231
Query: 99 ----------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
V AL+DMYAK G +D A ++FD M+ D W +++ G+ EA
Sbjct: 232 ARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEA 291
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMD 205
+ F+ M + ++P+ +T + +L C++ + G+ + + K K V+ L+D
Sbjct: 292 IYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVD 351
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+Y R G ++ A ++ V W I++G
Sbjct: 352 LYGRAGKLDKALEIVSNSSHNDSVLWR-ILLG 382
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD--VYSRFGCIEFARQVFQ 221
I+++L C +++ L +H +V +V + N L++ S G + +A+ +F
Sbjct: 6 AILALLQGCNSLKRL---RKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFH 62
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTAC 273
+M +WNSII GFA + +A+ ++N M F D +F+ L AC
Sbjct: 63 QMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKAC 115
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 146/264 (55%), Gaps = 21/264 (7%)
Query: 63 EAALEF-TRMRLYGTNPSHITFVTLLSGCADFPSN-----------------NVMVSTAL 104
E A EF RM++ G + T+ L+ C S+ +V V L
Sbjct: 33 EKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTL 92
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+ MY F ++ AT +F+ M W +++ V ++EA+E F M SG++PD
Sbjct: 93 VHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDD 152
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T + L+ CA + L IG +H + + V V N+L+D+Y++ G +E A ++F +
Sbjct: 153 ATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNK 212
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVSFTGALTACSHAGLIED 281
M R +VSWN++I+G A++G EALE F+ ++++ + +EV+F G L ACSH G++E+
Sbjct: 213 MKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEE 272
Query: 282 GLQYFDIMKKIYRVSPQIEHHGCI 305
G +YFDIM++ Y + P I+H+G +
Sbjct: 273 GRRYFDIMRRDYNIQPTIKHYGSM 296
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 2/171 (1%)
Query: 114 MDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV 171
MD A VF + D W ++ G + E+A E+++ MQ+ G D T ++ V
Sbjct: 1 MDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKV 60
Query: 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW 231
C + + +G +H V K +++V V NTL+ +Y F IE A +F+ M K LV+W
Sbjct: 61 CGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAW 120
Query: 232 NSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
N+II G EA+E F M + K D+ +F L+AC+ G ++ G
Sbjct: 121 NTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIG 171
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 28/222 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + I + G EA F RM G P TFV LS CA
Sbjct: 118 VAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSC 177
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
N V VS +L+DMYAK G ++ A +F+ M+G + W ++ G + +EA
Sbjct: 178 IDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEA 237
Query: 147 LEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY--VPKQDF--KDNVRVCN 201
LE F ++++ P+ +T + VL C++ + G RY + ++D+ + ++
Sbjct: 238 LELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEG---RRYFDIMRRDYNIQPTIKHYG 294
Query: 202 TLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
+++D+ R G +E A ++ + M + + W +++ V+G
Sbjct: 295 SMVDILGRAGLVEEAYRLIKSMPIESNSIVWRTLLAACRVHG 336
>gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Glycine max]
Length = 548
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 145/266 (54%), Gaps = 13/266 (4%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMV 100
T+ TV + ++ + + G EA M+L G P+ +T+ +L+SG + + V
Sbjct: 192 TVKDTVALNAVVAGYVQQGAANEALGLVESMKLMGLKPNVVTWNSLISGFSQ-KGDQGRV 250
Query: 101 STALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
S M A D+ + WT++++GFV+ +EA + F+ M G P
Sbjct: 251 SEIFRLMIADGVEPDVVS-----------WTSVISGFVQNFRNKEAFDTFKQMLSHGFHP 299
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
TI ++L CA + +G +H Y + ++ V + L+D+Y++ G I AR +F
Sbjct: 300 TSATISALLPACATAARVSVGREIHGYALVTGVEGDIYVRSALVDMYAKCGFISEARNLF 359
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGALTACSHAGLI 279
RM ++ V+WNSII GFA +G+ EA+E FN M+K GV K D ++FT ALTACSH G
Sbjct: 360 SRMPEKNTVTWNSIIFGFANHGYCEEAIELFNQMEKEGVAKLDHLTFTAALTACSHVGDF 419
Query: 280 EDGLQYFDIMKKIYRVSPQIEHHGCI 305
E G + F IM++ Y + P++EH+ C+
Sbjct: 420 ELGQRLFKIMQEKYSIEPRLEHYACM 445
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 94/183 (51%), Gaps = 4/183 (2%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ-I 155
+V++ L+ Y G++ A +FD + + W AL+ + +++ AL F MQ +
Sbjct: 63 VVASNLVSFYTCCGQLSHARKLFDKIPTTNVRRWIALIGSCARCGFYDHALAVFSEMQAV 122
Query: 156 SGVEPDYLTII-SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
G+ P+Y+ +I SVL C +V G +H ++ K F+ + V ++L+ +YS+ +E
Sbjct: 123 QGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVE 182
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
AR+VF M + V+ N+++ G+ G EAL M+ K + V++ ++ S
Sbjct: 183 DARKVFDGMTVKDTVALNAVVAGYVQQGAANEALGLVESMKLMGLKPNVVTWNSLISGFS 242
Query: 275 HAG 277
G
Sbjct: 243 QKG 245
>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
Length = 813
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 124/211 (58%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
++ +LL MYAK G +D A +FD M D ++AL++G+V+ EEA F+ MQ
Sbjct: 374 DLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQ 433
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
VEPD T++S++ C+++ L G H V + +CN L+D+Y++ G I+
Sbjct: 434 ACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRID 493
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
+RQVF M R +VSWN++I G+ ++G EA F M F D V+F L+ACS
Sbjct: 494 LSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 553
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H+GL+ +G +F +M+ Y ++P++EH+ C+
Sbjct: 554 HSGLVIEGKHWFHVMRHGYGLTPRMEHYICM 584
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 7/193 (3%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
++ V++ TALLDMYAK G + A VFD M R W+AL+ GFV +A F+
Sbjct: 270 TDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKA 329
Query: 153 MQISGV---EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
M G+ P +I S L CA++ L +G +H + K ++ N+L+ +Y++
Sbjct: 330 MLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK 387
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G I+ A +F M + VS+++++ G+ NG EA F MQ + D +
Sbjct: 388 AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSL 447
Query: 270 LTACSHAGLIEDG 282
+ ACSH ++ G
Sbjct: 448 IPACSHLAALQHG 460
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 111/256 (43%), Gaps = 32/256 (12%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSN-----------------NVMVSTALLDMYAK 110
+ RM + P++ TF L C+ + ++ VSTALLDMY K
Sbjct: 113 YRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVK 172
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQIS--GVEPDYLTII 166
+ A +F M D W A+L G+ + A+ + MQ+ + P+ T++
Sbjct: 173 CACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLV 232
Query: 167 SVLNVCANVRTLGIGLWMHRYV----------PKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
++L + A L G +H Y K D V + L+D+Y++ G + +A
Sbjct: 233 ALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 292
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALTACSH 275
R+VF M R V+W+++I GF + + +A F M +G+ S AL AC+
Sbjct: 293 RRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACAS 352
Query: 276 AGLIEDGLQYFDIMKK 291
+ G Q ++ K
Sbjct: 353 LDHLRMGEQLHALLAK 368
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 21/216 (9%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----- 95
+ TV +++ +S + ++G EA L F +M+ P T V+L+ C+ +
Sbjct: 402 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 461
Query: 96 ------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
+ + AL+DMYAK GR+DL+ VF++M D W ++ G+
Sbjct: 462 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHG 521
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVC 200
+EA F M G PD +T I +L+ C++ + G W H +
Sbjct: 522 LGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHY 581
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVS-WNSII 235
++D+ SR G ++ A + Q M R V W +++
Sbjct: 582 ICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 617
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+ L +R M V P+ T L C+ + G +HR+ + ++ V L+
Sbjct: 108 DGLHLYRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALL 167
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
D+Y + C+ A +F M R LV+WN+++ G+A +G A+ + MQ
Sbjct: 168 DMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 218
>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 143/282 (50%), Gaps = 24/282 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V W + I+ G EA F++MR G P IT +LL C PS
Sbjct: 333 VAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTS-PSELYQGMQVHG 391
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF----WTALLNGFVKRDYF 143
+V V LL MYAK + A F+ MR C+ W A+L ++ D
Sbjct: 392 YINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMR-CNADLVSWNAILTACMRHDQA 450
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EE ++M IS PDY+T+ +VL A ++ IG +H Y K + V N L
Sbjct: 451 EEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGL 510
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G ++ A ++F M +VSW+S+I+G+A G+ EAL+ F M++ K +
Sbjct: 511 IDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNH 570
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F G LTACSH GL+E+G + + M+K + ++P EH C+
Sbjct: 571 VTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCM 612
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 135/273 (49%), Gaps = 27/273 (9%)
Query: 28 RPQISIQTNNSKSTIDTTVQWTSS----ISRHCRSGCILEA--ALEFTRMRLYGTNPSHI 81
RPQ+ TNN K T+ + ++ S I+ C+ EA A EF + + G +
Sbjct: 6 RPQVGFATNNVKETVLSKLRAEQSSNEYITSLCKQKLFNEAIKAFEFLQKKT-GFCLTLS 64
Query: 82 TFVTLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM 124
T+ L+S C+ S ++ + +L+MY K + A VFD M
Sbjct: 65 TYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAM 124
Query: 125 --RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182
R WT+++ G+ + ALE++ M SGV PD T S++ C+++ +G+G
Sbjct: 125 PERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGR 184
Query: 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG 242
+H +V K +F ++ N L+ +Y++ I A VF RM R L+SW S+I GF+ G
Sbjct: 185 QLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLG 244
Query: 243 FVGEALEYFN-LMQKGVFKTDEVSFTGALTACS 274
+ EAL YF ++ +GV+ +E F +ACS
Sbjct: 245 YELEALCYFKEMLHQGVYLPNEFIFGSVFSACS 277
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 121/267 (45%), Gaps = 20/267 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WTS I+ + ++G A + +M G P TF +++ C+
Sbjct: 130 VSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAH 189
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+++ AL+ MY K + A VF M D W +++ GF + Y EA
Sbjct: 190 VLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEA 249
Query: 147 LEYFRVMQISGVE-PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
L YF+ M GV P+ SV + C+++ G +H K +V +L D
Sbjct: 250 LCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCD 309
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + AR VF ++ + LV+WN+II GFA G EA+ +F+ M+ DE++
Sbjct: 310 MYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEIT 369
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKI 292
L AC+ + G+Q + K+
Sbjct: 370 VRSLLCACTSPSELYQGMQVHGYINKM 396
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 3/176 (1%)
Query: 111 FGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQI-SGVEPDYLTIISVL 169
F ++ V +R + K+ F EA++ F +Q +G T ++
Sbjct: 11 FATNNVKETVLSKLRAEQSSNEYITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLI 70
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
+ C+ +R+L G +H ++ K ++ + N ++++Y + ++ A++VF M +R +V
Sbjct: 71 SACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVV 130
Query: 230 SWNSIIVGFAVNGFVGEALE-YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
SW S+I G++ NG G ALE YF ++Q GV D+ +F + ACS G I G Q
Sbjct: 131 SWTSVIAGYSQNGQGGNALEFYFQMLQSGVM-PDQFTFGSIIKACSSLGDIGLGRQ 185
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 53/320 (16%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF---- 93
S++ + + WTS I+ + R+ EA F M +G P +T + +LS CA
Sbjct: 197 SQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLE 256
Query: 94 --------------PSNNVMVSTALLDMYAKFGRMDLATVVFDVM-RGC--DFWTALLNG 136
P++ +V AL+DMYAK G A VFD + RG W A+++G
Sbjct: 257 LGRSLHLLVEEKGMPTSENLV-VALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDG 315
Query: 137 FVKRDYFE-------------------------------EALEYFRVMQISGVEPDYLTI 165
+ K + + EAL F M+ + D T+
Sbjct: 316 YCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTV 375
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
+++L CA++ L G +H + ++ + ++ + L+D+Y + G ++ A VFQRM K
Sbjct: 376 VNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGK 435
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
R + +W ++I G A NG ALE+F M+ F+ + VS+ LTACSH+ L+ +G Y
Sbjct: 436 RDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLY 495
Query: 286 FDIMKKIYRVSPQIEHHGCI 305
FD M+ +Y + PQIEH+GC+
Sbjct: 496 FDEMRILYNIHPQIEHYGCM 515
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 21/223 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ + S ++ + SG + EA L F MR + + T V LL+ CA +
Sbjct: 338 ITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHAC 397
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
++ + TALLDMY K GR+D AT+VF M R WTA++ G + A
Sbjct: 398 IEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAA 457
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-LWMHRYVPKQDFKDNVRVCNTLMD 205
LE+F M+ G +P+ ++ I+VL C++ L G L+ + + ++D
Sbjct: 458 LEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMID 517
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEA 247
+ R G ++ A + + M + V W SI+ V+ + A
Sbjct: 518 LLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLA 560
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 18/184 (9%)
Query: 111 FGRMDLATVVFD-VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT---II 166
F RM +T +FD +R C + R + FR M+ +GV PD T +
Sbjct: 60 FDRMPPSTFLFDTALRAC----SRAGSDPHRPFL-----LFRRMRRAGVRPDGFTFHFLF 110
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR-VCNTLMDVYSRFGCIEFARQVFQRMHK 225
+ + +L + +H + V N+L+ +Y R G AR+ F +H
Sbjct: 111 KCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHV 170
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
+ V+W +I G A G + + L+ D +S+T + A S A + +
Sbjct: 171 KDAVAWTMLISGLAKMGMLCDT----QLLLSQAPVRDVISWTSLIAAYSRANRAREAVGC 226
Query: 286 FDIM 289
F M
Sbjct: 227 FKTM 230
>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
Length = 735
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 143/280 (51%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
++ W++ I+ + ++G A F++M G P+ TFV +L+ +D +
Sbjct: 286 SITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHG 345
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
+ V +AL+DMYAK G + A FD + D WTA+++G V+ EE
Sbjct: 346 LMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEE 405
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL + M G+ P TI S L CA + L G +H + K V + L
Sbjct: 406 ALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALST 465
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ G +E VF+R+ R +++WNSII GF+ NG AL+ F M+ D ++
Sbjct: 466 MYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNIT 525
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L ACSH GL++ G +YF +M K Y ++P+++H+ C+
Sbjct: 526 FINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACM 565
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 101/200 (50%), Gaps = 3/200 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+NV V T+LL+MY K G + A +FD M R W+ ++ G+ EEA + FR+M
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210
Query: 154 -QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
+ E +VL+ + L +G MH + K D V V N+L+ +Y++ GC
Sbjct: 211 LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGC 270
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+ A VF+ +R ++W+++I G+A NG A+ F+ M F E +F G L A
Sbjct: 271 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNA 330
Query: 273 CSHAGLIEDGLQYFDIMKKI 292
S G + G Q +M K+
Sbjct: 331 SSDLGALAVGKQAHGLMVKL 350
>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
Length = 807
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 156/300 (52%), Gaps = 19/300 (6%)
Query: 25 LKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFV 84
+K R S + K + W + +S + + E F RM+ P T
Sbjct: 363 IKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLA 422
Query: 85 TLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGC 127
+LS C+ + N++ V++ L+D+Y+K G++ +A ++F++M
Sbjct: 423 VILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTER 482
Query: 128 DF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185
D W ++++G EEA ++ + M+ +G+ P + S++N+CA + ++ G MH
Sbjct: 483 DVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMH 542
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
V K + NV V +L+D+Y++ G ++ AR F M + LV+WN +I G+A NGF
Sbjct: 543 AQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGE 602
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+A+E F M K D V+F LT CSH+GL+++ + +F+ M+ Y ++P +EH+ C+
Sbjct: 603 KAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCL 662
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 124/274 (45%), Gaps = 27/274 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V W + I+ RSG EA + M G P++ T ++LS C +
Sbjct: 107 AVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHG 166
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
+ V LL MY K G + A +FD M + +TA++ G + ++
Sbjct: 167 LAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDD 226
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANV--------RTLGIGLWMHRYVPKQDFKDNV 197
AL F M +G+ D + + SVL CA R + + +H V ++ F +
Sbjct: 227 ALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQ 286
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
V N+L+D+Y++ ++ A +VF+ + ++VSWN +I G+ G A+E MQ+
Sbjct: 287 HVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQES 346
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
F+ +EV+++ L +C A + FD + K
Sbjct: 347 GFEPNEVTYSNMLASCIKARDVPSARAMFDKIPK 380
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 2/186 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P NV A + + G + A + M R W ++ + EALE +
Sbjct: 71 LPHPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMY 130
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+ M G+ P T+ SVL+ C V L G H K + V N L+ +Y++
Sbjct: 131 QGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKC 190
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + A ++F M VS+ +++ G A G V +AL F M + + D V+ + L
Sbjct: 191 GSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVL 250
Query: 271 TACSHA 276
AC+ A
Sbjct: 251 GACAQA 256
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLM 254
NV N + R G + AR + RM R VSWN++I A +G GEALE Y ++
Sbjct: 75 NVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGML 134
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
Q+G+ T+ + L+AC ++DG + + K+
Sbjct: 135 QEGLAPTN-FTLASVLSACGAVAALDDGRRCHGLAVKV 171
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 125/201 (62%), Gaps = 3/201 (1%)
Query: 108 YAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
Y+K G MD+A ++FD ++ WT +++G+ ++ +EA+ M+ SG+ D
Sbjct: 262 YSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFF 321
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH- 224
IS+L CA LG+G MH + F+ + +V N+ +D+Y++ GC++ A +VF M
Sbjct: 322 ISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKT 381
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
++ LVSWNS+I GF ++G +++E FN M + FK D +F G L AC+HAGL+ +G
Sbjct: 382 EKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRG 441
Query: 285 YFDIMKKIYRVSPQIEHHGCI 305
YF M+++Y + PQIEH+GC+
Sbjct: 442 YFYSMQRVYGIVPQIEHYGCM 462
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 102/206 (49%), Gaps = 11/206 (5%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
++ V +L+D Y + G +++A VF M D W +++ G VK + AL+ F M
Sbjct: 158 DIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMP 217
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
E D ++ ++L+ + + + ++D + +T++ YS+ G ++
Sbjct: 218 ----ERDRVSWNTMLDGFTKAGEMDKAFKLFERMAERD----IVSWSTMVCGYSKNGDMD 269
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
AR +F R + LV W +II G+A G V EA+ + M+K + D+ F L AC+
Sbjct: 270 MARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACA 329
Query: 275 HAGLIEDGLQYFD-IMKKIYRVSPQI 299
+G++ G + D ++ +R S ++
Sbjct: 330 ESGMLGLGKKMHDSFLRSRFRCSTKV 355
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRT-LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M + GV D T +L C + L + +H +V K F ++ V N+L+D Y R G
Sbjct: 114 MHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCG 173
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
+E A +VF M +R +VSWNS++ G NG + AL+ F+ M + D VS+ L
Sbjct: 174 DVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMP----ERDRVSWNTMLD 229
Query: 272 ACSHAGLIEDGLQYFDIMKK 291
+ AG ++ + F+ M +
Sbjct: 230 GFTKAGEMDKAFKLFERMAE 249
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 20/163 (12%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------ 92
+ + V WT+ IS + G + EA M G F+++L+ CA+
Sbjct: 277 RCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGL 336
Query: 93 -------FPSNNVMVSTALL----DMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFV 138
F + ST +L DMYAK G +D A VF+ M + W ++++GF
Sbjct: 337 GKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFG 396
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG 181
+ E+++E F M G +PD T I +L C + + G
Sbjct: 397 IHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEG 439
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 132/216 (61%), Gaps = 4/216 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P + + +++ Y K G+MD+A +F M + WT +++G+V+ D +EAL+ F
Sbjct: 176 IPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLF 235
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-DNVRVCNTLMDVYSR 209
MQ S VEPD +++ + L+ CA + L G W+H Y+ K + D+V C L+D+Y++
Sbjct: 236 HEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGC-VLIDMYAK 294
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G +E A +VF+ + K+++ +W ++I G+A +G EA+ F MQK K + ++FT
Sbjct: 295 CGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAV 354
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTACS+ GL+E+G F M++ Y + P IEH+GCI
Sbjct: 355 LTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCI 390
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 33/199 (16%)
Query: 117 ATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A +VFD D W ++ GF D E +L ++ M S + T S+L C+N
Sbjct: 68 AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSN 127
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ +H + K ++++V N+L++ Y+ G + A +F R+ + VSWNS+
Sbjct: 128 LSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSV 187
Query: 235 IVGFA--------------------------VNGFV-----GEALEYFNLMQKGVFKTDE 263
I G+ ++G+V EAL+ F+ MQ + D
Sbjct: 188 IKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDN 247
Query: 264 VSFTGALTACSHAGLIEDG 282
VS AL+AC+ G +E G
Sbjct: 248 VSLANALSACAQLGALEQG 266
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
+ WT+ IS + ++ EA F M+ P +++ LS CA +
Sbjct: 212 AISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHS 271
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+ ++ L+DMYAK G M+ A VF + + WTAL++G+ + E
Sbjct: 272 YLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGRE 331
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF--KDNVRVCNTL 203
A+ F MQ G++P+ +T +VL C+ + G + Y ++D+ K + +
Sbjct: 332 AISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIF-YSMERDYNLKPTIEHYGCI 390
Query: 204 MDVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
+D+ R G ++ A++ Q M K V W +++
Sbjct: 391 VDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALL 423
>gi|354805211|gb|AER41628.1| pentatricopeptide [Oryza nivara]
gi|354805240|gb|AER41654.1| pentatricopeptide [Oryza rufipogon]
Length = 520
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 146/287 (50%), Gaps = 27/287 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS------GCADFPSN--- 96
V W +S + G + E F MR G TF LLS C D +
Sbjct: 73 VLWNVMVSCYSSHGLVRECWDVFGSMRRSGFPGDGFTFSALLSVRASSSSCYDHANLLLV 132
Query: 97 ----------------NVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFV 138
+V+V+TALLDMYAK G++ A+ VFD V+R W A++ +
Sbjct: 133 LGSSVHGIVIRLGLHLDVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYG 192
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
K D +EA + F M G PD LT+ S+ + CA++ +H Y ++ +D ++
Sbjct: 193 KHDRGKEAFDLFVSMMRHGFCPDELTLASLFSSCADMAAANEATQLHAYTVRRGLQDFLQ 252
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V N L+ Y + G ++ A++ F +H LV+W+S++ FA G A++ F+ M +
Sbjct: 253 VGNALIMAYGKNGFVQEAKRTFGMIHNPDLVTWSSMVSSFAYLGLAKSAIDLFDRMLQQG 312
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D ++F G L+ACSHAGLIEDG +YF +M + Y++ P +H C+
Sbjct: 313 IRADGIAFLGVLSACSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACL 359
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 21/212 (9%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++ V+TAL D YAK G +D A VFD +R W +++ + E + F M
Sbjct: 39 SDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGLVRECWDVFGSM 98
Query: 154 QISGVEPDYLTIISVLNVCANVRT--------LGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+ SG D T ++L+V A+ + L +G +H V + +V V L+D
Sbjct: 99 RRSGFPGDGFTFSALLSVRASSSSCYDHANLLLVLGSSVHGIVIRLGLHLDVVVATALLD 158
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + A +VF M R VSWN+IIV + + EA + F M + F DE++
Sbjct: 159 MYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFCPDELT 218
Query: 266 FTGALTACS-----------HAGLIEDGLQYF 286
++C+ HA + GLQ F
Sbjct: 219 LASLFSSCADMAAANEATQLHAYTVRRGLQDF 250
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%)
Query: 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
A VR +H K + RV L D Y++ G ++ AR+VF R V WN
Sbjct: 17 AGVRGRPACAAVHPLSVKSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWN 76
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ ++ +G V E + F M++ F D +F+ L+
Sbjct: 77 VMVSCYSSHGLVRECWDVFGSMRRSGFPGDGFTFSALLS 115
>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
Length = 852
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 35/293 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
V WT+ I+ + + GC EA F +M G+ P+ +T +++LS CA
Sbjct: 329 VTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAY 388
Query: 92 -----------DF--PSNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALL 134
DF ++MV AL+DMY+K A +FD + R WT ++
Sbjct: 389 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 448
Query: 135 NGFVKRDYFEEALEYFRVM--QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
G + +AL+ F M + GV P+ TI +L CA++ + IG +H YV +
Sbjct: 449 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 508
Query: 193 FKDNVR--VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 250
D+ V N L+++YS+ G ++ AR VF M +++ +SW S++ G+ ++G EAL+
Sbjct: 509 QYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDI 568
Query: 251 FNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303
F+ M+K F D+++F L ACSH G+++ GL YFD M Y ++P+ EH+
Sbjct: 569 FDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYA 621
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 125/279 (44%), Gaps = 28/279 (10%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--- 95
+ T V W I H + G + A RM GT H T +L C + PS
Sbjct: 76 RVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRC 135
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCD---FWTALLNG 136
+NV + AL+ MY++ G ++ A+++FD RG D W ++++
Sbjct: 136 GSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSA 195
Query: 137 FVKRDYFEEALEYFRVMQI------SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
VK AL+ F M + + D ++I+++L C +++ + +H +
Sbjct: 196 HVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIR 255
Query: 191 QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 250
+V V N L+D Y++ G +E A +VF M + +VSWN+++ G++ +G A E
Sbjct: 256 NGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFEL 315
Query: 251 FNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
F M+K D V++T + S G + L F M
Sbjct: 316 FKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 354
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 150/294 (51%), Gaps = 21/294 (7%)
Query: 32 SIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA 91
++ T N S+ D V W S I+ + + G A F ++RL NP T V ++ CA
Sbjct: 484 ALTTFNRMSSRDI-VTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACA 542
Query: 92 ---DFP--------------SNNVMVSTALLDMYAKFGRMDLATVVF---DVMRGCDFWT 131
D ++ V AL+DMYAK G + A +F D + W
Sbjct: 543 LLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWN 602
Query: 132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
++ +++ + +EA+ F M++ P+ +T +SVL A + G+ H + +
Sbjct: 603 VIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQM 662
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
F N V N+L+D+Y++ G ++++ ++F M + VSWN+++ G+AV+G A+ F
Sbjct: 663 GFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALF 722
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+LMQ+ + D VSF L+AC HAGL+E+G + F M Y + P +EH+ C+
Sbjct: 723 SLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACM 776
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 26/269 (9%)
Query: 38 SKSTIDTT-----VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD 92
++S D+T + W S I + RS EA + M G P TF +L C
Sbjct: 82 ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141
Query: 93 FPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTAL 133
+ +V + L+DMY+K G + A VFD M D W A+
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAM 201
Query: 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193
+ G + + EA+++FR MQ+ GVEP ++++++ + + + +H YV ++DF
Sbjct: 202 IAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF 261
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
V N L+D+YS+ G ++ AR+VF +M + VSW +++ G+A NG E LE F+
Sbjct: 262 SSAVS--NGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDK 319
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M+ G + ++VS A A + +E G
Sbjct: 320 MKLGNVRINKVSAVSAFLAAAETIDLEKG 348
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 128/256 (50%), Gaps = 19/256 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL---------------LSGC 90
V W + ++ + +GC +E F +M+L + ++ V+ + GC
Sbjct: 295 VSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGC 354
Query: 91 A--DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
A ++++V+T L+ MYAK G + A +F ++G D W+A++ V+ Y EEA
Sbjct: 355 ALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEA 414
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F+ MQ ++P+ +T++S+L CA++ L +G +H + K D ++ L+ +
Sbjct: 415 LSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSM 474
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G A F RM R +V+WNS+I G+A G A++ F ++ D +
Sbjct: 475 YAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTM 534
Query: 267 TGALTACSHAGLIEDG 282
G + AC+ ++ G
Sbjct: 535 VGVVPACALLNDLDQG 550
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 16/210 (7%)
Query: 61 ILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----NNVMVS--------TALLDM 107
I AA EF + T +++ + LLS C ++VS T L+++
Sbjct: 14 IATAASEFPSLS-SSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINL 72
Query: 108 YAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
Y+ F + DLA VFD W +++ + + + EALE + M G+EPD T
Sbjct: 73 YSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTF 132
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
VL C L G+W H + ++ + +V + L+D+YS+ G ++ AR+VF +M K
Sbjct: 133 TFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPK 192
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
R +V+WN++I G + + EA+++F MQ
Sbjct: 193 RDVVAWNAMIAGLSQSEDPCEAVDFFRSMQ 222
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
S +YL +L+ C ++ L L +H + FK + + + L+++YS F +
Sbjct: 26 SSTYTNYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDL 81
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLMQKGVFKTDEVSFTGALTACS 274
AR VF + + WNS+I + + EALE Y+ +++KG+ + D+ +FT L AC+
Sbjct: 82 ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGL-EPDKYTFTFVLKACT 140
Query: 275 HAGLIEDGLQY 285
A +++G+ +
Sbjct: 141 GALNLQEGVWF 151
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 152/311 (48%), Gaps = 51/311 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
V W S IS + C +A F +M P+ +T V +LS CA
Sbjct: 193 VSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSY 252
Query: 92 ----------------------------------DFPSNNVMVSTALLDMYAKFGRMDLA 117
+ P +V T +LD YAK G D A
Sbjct: 253 IERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAA 312
Query: 118 TVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV-EPDYLTIISVLNVCAN 174
+VF+ M + W L++ + + +EAL F +Q+S + +PD +T++S L+ CA
Sbjct: 313 RLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQ 372
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ + +G W+H Y+ ++ N + ++L+D+Y++ G +E A +VF + +R + W+++
Sbjct: 373 LGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAM 432
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I G ++G A++ F MQ+ K + V+FT L ACSHAGL+++G +F M+ +Y
Sbjct: 433 IAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYG 492
Query: 295 VSPQIEHHGCI 305
V P+++H+ C+
Sbjct: 493 VVPEMKHYACM 503
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 106/220 (48%), Gaps = 34/220 (15%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
++ + +L+ Y G + +A +F + D W ++++ F + + E+ALE F M+
Sbjct: 160 DLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKME 219
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V P+ +T++ VL+ CA L G W+ Y+ ++ K ++ +CN ++D+Y++ G ++
Sbjct: 220 RENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVD 279
Query: 215 FARQVFQRMHKRTLVS-------------------------------WNSIIVGFAVNGF 243
A+++F M +R + S WN +I + NG
Sbjct: 280 DAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGK 339
Query: 244 VGEALEYFNLMQ-KGVFKTDEVSFTGALTACSHAGLIEDG 282
EAL FN +Q + K DEV+ L+AC+ G I+ G
Sbjct: 340 PKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLG 379
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 90/193 (46%), Gaps = 7/193 (3%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKR-DYFEEALEY 149
F ++ + ++AL + F +D A +FD + + W L+ + D F+ + +
Sbjct: 58 FSASKLFTASAL----SSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIF 113
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
++ P+ T V+ + ++ +G +H K F ++ + N+L+ Y
Sbjct: 114 LDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGA 173
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G + A ++F+ + + +VSWNS+I FA +ALE F M++ + V+ G
Sbjct: 174 CGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGV 233
Query: 270 LTACSHAGLIEDG 282
L+AC+ +E G
Sbjct: 234 LSACAKKLDLEFG 246
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 147/281 (52%), Gaps = 21/281 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYG-TNPSHITFVTLLSGCADFPS-------- 95
T W S I +S ++A + RM + P TF L C +
Sbjct: 74 TQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVH 133
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+V+V T L+ Y + G +++A +VFD M D W A+++ + + Y +
Sbjct: 134 GSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQ 193
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL + M+ V D T++ +L+ C++V L +G+ +HR ++ NV V N L+
Sbjct: 194 EALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALI 253
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G ++ A +VF M R +WNS+IVGF V+GF EA+ +FN M + + + +
Sbjct: 254 DMYAKCGSLDGALEVFNGM-PRDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSI 312
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L CSH GL+E+G+++F M + V P I+H+GCI
Sbjct: 313 AFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCI 353
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD--VYSRFGCIEFARQVFQ 221
I++VL C N+ L + +V +++ + N++++ S G + +A+ +F+
Sbjct: 11 AILTVLQGCNNLTRLKK---IQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFR 67
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFTGALTAC 273
+ +WNSII GFA + +A+ Y+N M V D +F+ L AC
Sbjct: 68 HILNPQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKAC 120
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 141/281 (50%), Gaps = 50/281 (17%)
Query: 75 GTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLA 117
G P+ T T++ CA S ++V+V TAL+ MYA+ G ++ A
Sbjct: 5 GVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDA 64
Query: 118 TVVFDVM---------------------------------RGCDFWTALLNGFVKRDYFE 144
VFD M R WTA++ G+ + Y +
Sbjct: 65 GHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGD 124
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E+L F M+ +G++ D + SVL+ CA++ L +G H YV + F ++ V + L+
Sbjct: 125 ESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALV 184
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G +E A QVF +M +R VSWNSII G A +G +A+ F M + K +E+
Sbjct: 185 DMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEI 244
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SF G L+ACSH GL+ +G YF++M + Y + P + H+ C+
Sbjct: 245 SFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCM 285
>gi|255548950|ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545475|gb|EEF46980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 397
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 142/251 (56%), Gaps = 23/251 (9%)
Query: 63 EAALEFTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTALL 105
+A + M Y P+ T+ +L CA N+V V ++
Sbjct: 119 KALCMYKLMLEYDVLPNKFTYPFVLKACAGIGYLNLGKSVHGSVLKFGFDNDVHVQNTMV 178
Query: 106 DMYAKFGR--MDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV-EP 160
MY GR ++ A VFD M R W+A++ G+ + +A++ FR MQI GV P
Sbjct: 179 HMYC-CGRDGIEFAREVFDEMCKRDPVSWSAMIGGYARLGRCSDAIDLFREMQIEGVCRP 237
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D +T++SVL+ C ++ L +G W+ Y+ K+ + +V +CN L+D++++ G ++ A ++F
Sbjct: 238 DEITMVSVLSACTDLGALELGKWVESYIEKEKVQKSVELCNALIDMFAKCGDVDKAIKLF 297
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
+ M RT+VSW S+I G A++G EA+E+F M K D+V+F G L+ACSH+GL++
Sbjct: 298 RNMKDRTIVSWTSVIAGLAMHGRGLEAVEFFEEMIKSGVLPDDVAFIGLLSACSHSGLVD 357
Query: 281 DGLQYFDIMKK 291
G +YFD+M++
Sbjct: 358 KGREYFDLMRE 368
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 154/281 (54%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC---ADFPS------- 95
V WT+ IS + + G EA F M T P+H TF T+L+ C F +
Sbjct: 129 VSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSI 188
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+++ V ++LLDMYAK GR+ A VF + R TA+++G+ + EEA
Sbjct: 189 AIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEA 248
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ FR +QI G+ + +T SVL + + L G +H +V + V + N+L+D+
Sbjct: 249 LKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDM 308
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVS 265
YS+ G + +AR++F M +RT +SWN+++VG++ +G E LE F LM ++ K D ++
Sbjct: 309 YSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSIT 368
Query: 266 FTGALTACSHAGLIEDGLQ-YFDIMKKIYRVSPQIEHHGCI 305
+ L+ CSH L + GL+ +++++ + P I H+GC+
Sbjct: 369 YLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCV 409
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M I G E + S+LN C + R + G +H ++ K + +V + L+ +Y++ C
Sbjct: 53 MAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDC 112
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+ AR +F M +R +VSW ++I ++ GF EAL F M + + + +F LT+
Sbjct: 113 LGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTS 172
Query: 273 CSHAGLIEDGLQYFDIMKK 291
C + E G Q I K
Sbjct: 173 CYGSLGFETGRQIHSIAIK 191
>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Brachypodium distachyon]
Length = 654
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 124/211 (58%), Gaps = 6/211 (2%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
V+T L+D YAK G + A VF M R W+A++ + K + +A+E F+ M S
Sbjct: 216 VATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASD 275
Query: 158 VE--PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
+ P+ +TI+SVLN CA V L G +H Y+ ++ F V V N LM +Y R GC+E
Sbjct: 276 ADLVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEV 335
Query: 216 ARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
R +F+ + H+R +VSWNS+I G+ ++GF EA++ F M F ++F L ACS
Sbjct: 336 GRHIFKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACS 395
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
HAGL+ +G F+ M + Y V+P+ EH+ C+
Sbjct: 396 HAGLVNEGKMLFESMVE-YGVTPRAEHYACM 425
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 21/202 (10%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++ +ST L++ YA G + A VFD ++ W ALL D+ +EAL M
Sbjct: 106 SDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLADM 165
Query: 154 QISGVEPDYLTIISVLNVC-----------ANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
GV D + L C A VR + H + ++ + + V T
Sbjct: 166 GRLGVPVDSYSYTHGLKACIAVSASHAPASARVREV------HAHAIRRGYALHTHVATT 219
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM--QKGVFK 260
L+D Y++ G + +A VF M +R +VSW+++I +A N +A+E F M
Sbjct: 220 LIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLV 279
Query: 261 TDEVSFTGALTACSHAGLIEDG 282
+ ++ L AC+ + G
Sbjct: 280 PNSITIVSVLNACAGVNALSHG 301
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 159/319 (49%), Gaps = 52/319 (16%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYG--TNPSHITFVTLLSGCA----- 91
+S V W + I + RSG EA F R+ G P +T + +SGCA
Sbjct: 181 ESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDL 240
Query: 92 -------DFPSNN-----VMVSTALLDMYAKFGRMDLATVVF------------------ 121
+F + V + A++DMY K G ++LA VF
Sbjct: 241 ELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGH 300
Query: 122 -------------DVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
D M D W AL+ G+V+ +EA+ F MQ S V+P+ +T++
Sbjct: 301 ARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMV 360
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
++L+ C+ + L +G+W+H Y+ + +V + +L+D+Y++ G I+ A +F+ + +
Sbjct: 361 NLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDK 420
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
++W ++I G A +G EA+EYF M + DE++F G L+AC HAGL+++G Q+F
Sbjct: 421 NALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFF 480
Query: 287 DIMKKIYRVSPQIEHHGCI 305
+M + Y + +++H+ C+
Sbjct: 481 SLMHEKYHLERKMKHYSCM 499
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 129/293 (44%), Gaps = 66/293 (22%)
Query: 52 ISRHCRSGCILEAALEFTRMRLYGTN--PSHITFVTLLSGCADFP--------------- 94
+ RHC L R L ++ P H+TF LL CA
Sbjct: 100 VDRHC---------LPLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKL 150
Query: 95 --SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
S +V V A + ++ G M LA +FD D W L+ G+V+ EALE F
Sbjct: 151 GFSADVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELF 210
Query: 151 RVMQISG--VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
+ G V PD +T+I ++ CA + L +G +H +V + + VR+ N +MD+Y
Sbjct: 211 WRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYV 270
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFA--------------------------VNG 242
+ G +E A+ VF+R+ +T+VSW ++IVG A + G
Sbjct: 271 KCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAG 330
Query: 243 FV-----GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL---QYFD 287
+V EA+ F+ MQ+ +E++ L+ACS G +E G+ Y D
Sbjct: 331 YVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYID 383
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 27/219 (12%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W + ++ + ++ EA F M+ +P+ IT V LLS C+ +
Sbjct: 324 WNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYID 383
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
+V + T+L+DMYAK G + A +F + + WTA++ G + +EA+E
Sbjct: 384 RHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIE 443
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL----WMHRYVPKQDFKDNVRVCNTLM 204
YF+ M G++PD +T I VL+ C + + G MH K + ++ + ++
Sbjct: 444 YFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHE---KYHLERKMKHYSCMI 500
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
D+ R G ++ A Q+ M V W ++ ++G
Sbjct: 501 DLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHG 539
>gi|255572205|ref|XP_002527042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533604|gb|EEF35342.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 520
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 147/281 (52%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
T V W S I+ + + E F RM + GT P+ T ++L C+
Sbjct: 196 TLVAWNSLIAGYSSAADSKECIELFWRMNMEGTKPTVTTLSSILLACSRAAHLQHGRFIH 255
Query: 92 DFPSNN-----VMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFE 144
+ N + VS+ L+++Y K G++ A +F ++ + W +++G+V +
Sbjct: 256 GYAVRNRVQLDIFVSSGLIELYFKCGKVQSAENIFYMLPKANVVLWNVMISGYVTIGDYV 315
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+AL+ + M+I+ V+PD +T S+L+ C+ + L G +H + K D + N V L+
Sbjct: 316 KALDMYDEMKIASVKPDAVTFSSILSACSQLAALEKGKEIHNCITKNDLETNEIVMGALL 375
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G ++ A VF ++ +R L+SW SII + +G EAL F +Q+ D V
Sbjct: 376 DMYAKCGAVDEALSVFNKLPERDLLSWTSIISAYGSHGQALEALRLFEELQQSKASPDAV 435
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F L+ACSHAGL++ G YF+ M Y + P +EH+ C+
Sbjct: 436 TFLAVLSACSHAGLVDKGYYYFNQMITNYGIKPGLEHYSCL 476
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 132/263 (50%), Gaps = 19/263 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------DFP 94
W + IS + + G +A F +MR G P+ +T T++S CA +
Sbjct: 99 WNTVISCYYQDGKAEKALEMFGKMRDSGFEPNSVTLTTVISSCARLLDLERGKEIHREVM 158
Query: 95 SNNVM----VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
N ++ V +AL+DMY KFG +DLA +F+ M + W +L+ G+ +E +E
Sbjct: 159 QNGMVLDGFVGSALVDMYGKFGCLDLAKDIFEQMPKKTLVAWNSLIAGYSSAADSKECIE 218
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M + G +P T+ S+L C+ L G ++H Y + + ++ V + L+++Y
Sbjct: 219 LFWRMNMEGTKPTVTTLSSILLACSRAAHLQHGRFIHGYAVRNRVQLDIFVSSGLIELYF 278
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G ++ A +F + K +V WN +I G+ G +AL+ ++ M+ K D V+F+
Sbjct: 279 KCGKVQSAENIFYMLPKANVVLWNVMISGYVTIGDYVKALDMYDEMKIASVKPDAVTFSS 338
Query: 269 ALTACSHAGLIEDGLQYFDIMKK 291
L+ACS +E G + + + K
Sbjct: 339 ILSACSQLAALEKGKEIHNCITK 361
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 122/244 (50%), Gaps = 21/244 (8%)
Query: 60 CILEAALE-FTRMRLYG-TNPSHITFVTLLSGCADFPSNN-----------------VMV 100
C+ ALE F R+ Y P T+ ++L C + ++V
Sbjct: 8 CMYTEALELFDRLLQYPYLQPDSFTYPSVLKACGGLGRYDYGRMIHTHLIKSGFVFDIVV 67
Query: 101 STALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
+++L+ ++AK A +FD M R W +++ + + E+ALE F M+ SG
Sbjct: 68 ASSLVSLHAKCNLFGYAIQLFDEMPERDVACWNTVISCYYQDGKAEKALEMFGKMRDSGF 127
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
EP+ +T+ +V++ CA + L G +HR V + + V + L+D+Y +FGC++ A+
Sbjct: 128 EPNSVTLTTVISSCARLLDLERGKEIHREVMQNGMVLDGFVGSALVDMYGKFGCLDLAKD 187
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
+F++M K+TLV+WNS+I G++ E +E F M K + + L ACS A
Sbjct: 188 IFEQMPKKTLVAWNSLIAGYSSAADSKECIELFWRMNMEGTKPTVTTLSSILLACSRAAH 247
Query: 279 IEDG 282
++ G
Sbjct: 248 LQHG 251
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 144/286 (50%), Gaps = 26/286 (9%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH----ITFVTLLSGCA--- 91
K +I T V W I RSG T R + PS +T+ ++ G A
Sbjct: 56 KMSIRTAVTWIEMIDGFARSGDTE------TARRFFDDVPSELRNVVTWTVMVDGYARNA 109
Query: 92 ----------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK 139
P N ++++ Y K G + A +FD + R W +L++G+ +
Sbjct: 110 EMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQ 169
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
+ EEALE F MQ G EPD +TI SVL+ C+ + L G +H + + K N V
Sbjct: 170 NGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFV 229
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
N L+D+Y++ G + AR +F+ M R WNS+I GFA++G EALE+F M+
Sbjct: 230 LNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHE 289
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
DE++F L+AC+H G + GL+ F M+K Y ++ I+H+GC+
Sbjct: 290 GPDEITFLSVLSACAHGGFVNAGLEIFSRMEK-YGLTTGIKHYGCL 334
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 24/212 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W S IS + ++G EA F +M+ G P +T ++LS C+
Sbjct: 158 VNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHM 217
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKRDYFE 144
N V L+DMYAK G + A ++F+ M R C W ++++GF +
Sbjct: 218 MNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRAC--WNSMISGFAIHGQSK 275
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EALE+F M+ S PD +T +SVL+ CA+ + GL + + K ++ L+
Sbjct: 276 EALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLI 335
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
D+ R G I+ A + +RM K V W +++
Sbjct: 336 DLLGRAGRIKEAYDLIKRMPVKPNDVVWGALL 367
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 27/218 (12%)
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQI- 155
M+ T+L+ MYAK G + + VFD M R W A++ G++ + A+ F M I
Sbjct: 1 MIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIR 60
Query: 156 ---SGVE---------------------PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
+ +E P L + V + + R V +
Sbjct: 61 TAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEG 120
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
+ N ++++ Y + G ++ AR +F R+ R LV+WNS+I G+A NGF EALE F
Sbjct: 121 MPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAF 180
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
MQ F+ DEV+ L+ACS GL++ G + +M
Sbjct: 181 GKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMM 218
>gi|255552816|ref|XP_002517451.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543462|gb|EEF44993.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 428
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 126/234 (53%), Gaps = 4/234 (1%)
Query: 75 GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTA 132
G + + L+ CA P + + TA++ +YAK M A +FD + D W
Sbjct: 42 GIHTNTYAISKLIDFCALSPHDG-HIQTAVVRLYAKCKIMSDAHKMFDEIHRPDVIQWNV 100
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
L+NG+++ + EAL FR M + GVEPD + + L CA L G W+H YV K
Sbjct: 101 LMNGYIESNLESEALRVFRFMFVKGVEPDEFCVTTALAACAKSGALWQGKWIHEYVKKTT 160
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252
+V + L+D+Y++ G I A QVF+ M KR+ SW ++I G+A++G+ EA+ Y
Sbjct: 161 LGFDVFIGTALVDMYAKCGWINMAVQVFEEMPKRSAFSWAAMIGGYAIHGYAREAIHYLE 220
Query: 253 LMQ-KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
M + + D V G LTAC+HAGL E+G D MK Y + P+ EH+ C+
Sbjct: 221 RMHAEDGLRPDGVVLLGVLTACTHAGLQEEGRFLLDNMKARYGIVPRHEHYSCV 274
>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
Length = 745
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 152/293 (51%), Gaps = 35/293 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
V WT+ I+ + + GC EA F +M G+ P+ +T +++LS CA
Sbjct: 222 VTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAY 281
Query: 92 -----------DF--PSNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALL 134
DF ++MV AL+DMY+K A +FD + R WT ++
Sbjct: 282 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 341
Query: 135 NGFVKRDYFEEALEYFRVM--QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
G + +AL+ F M + GV P+ TI +L CA++ + IG +H YV +
Sbjct: 342 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 401
Query: 193 FKDNVR--VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 250
D+ V N L+++YS+ G ++ AR VF M +++ +SW S++ G+ ++G EAL+
Sbjct: 402 QYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDI 461
Query: 251 FNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303
F+ M+K F D+++F L ACSH G+++ GL YFD M Y ++P+ EH+
Sbjct: 462 FDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYA 514
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 133/317 (41%), Gaps = 74/317 (23%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRL-YGTNPSH-----ITFVTLLSGCADFPS 95
ID + W S +S H +S A F++M L P++ I+ V +L C +
Sbjct: 76 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 135
Query: 96 N-----------------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--------- 129
+V V AL+D YAK G M+ A VF++M D
Sbjct: 136 VPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 195
Query: 130 ----------------------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
WTA++ G+ +R EAL FR M SG P+
Sbjct: 196 YSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPN 255
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPK-------QDF---KDNVRVCNTLMDVYSRFG 211
+TIISVL+ CA++ G+ +H Y K DF +++ V N L+D+YS+
Sbjct: 256 CVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 315
Query: 212 CIEFARQVFQR--MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
+ AR +F + +R +V+W +I G A G +AL+ F M + ++T +
Sbjct: 316 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 375
Query: 270 --LTACSHAGLIEDGLQ 284
L AC+H I G Q
Sbjct: 376 CILMACAHLAAIRIGKQ 392
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 28/243 (11%)
Query: 75 GTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLA 117
GT H T +L C + PS +NV + AL+ MY++ G ++ A
Sbjct: 5 GTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 64
Query: 118 TVVFD--VMRGCD---FWTALLNGFVKRDYFEEALEYFRVMQI------SGVEPDYLTII 166
+++FD RG D W ++++ VK AL+ F M + + D ++I+
Sbjct: 65 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 124
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
++L C +++ + +H + +V V N L+D Y++ G +E A +VF M +
Sbjct: 125 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 184
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
+VSWN+++ G++ +G A E F M+K D V++T + S G + L F
Sbjct: 185 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 244
Query: 287 DIM 289
M
Sbjct: 245 RQM 247
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M +G D+ T+ VL C + + G H + F+ NV +CN L+ +YSR G
Sbjct: 1 MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60
Query: 213 IEFARQVFQRMHKRTL---VSWNSIIVGFAVNGFVGEALEYFNLMQKGVF------KTDE 263
+E A +F + +R + +SWNSI+ + AL+ F+ M V ++D
Sbjct: 61 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120
Query: 264 VSFTGALTAC 273
+S L AC
Sbjct: 121 ISIVNILPAC 130
>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
Length = 763
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 143/282 (50%), Gaps = 24/282 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V W + I+ G EA F++MR G P IT +LL C PS
Sbjct: 333 VAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTS-PSELYQGMQVHG 391
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF----WTALLNGFVKRDYF 143
+V V LL MYAK + A F+ MR C+ W A+L + D
Sbjct: 392 YINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMR-CNADLVSWNAILTACMHHDQA 450
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EE ++M IS PDY+T+ +VL A ++ IG +H Y K ++ V N L
Sbjct: 451 EEVFGLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDISVTNGL 510
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G ++ AR++F + +VSW+S+I+G+A G+ EAL+ F M++ K +
Sbjct: 511 IDLYAKCGSLKTARKIFDSVINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNH 570
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F G LTACSH GL+E+G Q + M+K + + P EH C+
Sbjct: 571 VTFVGVLTACSHVGLVEEGWQLYGTMEKEFGIVPTREHCSCM 612
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 136/273 (49%), Gaps = 27/273 (9%)
Query: 28 RPQISIQTNNSKSTIDTTVQWTSS----ISRHCRSGCILEA--ALEFTRMRLYGTNPSHI 81
RPQ+ TNN K T+ + ++ S I+ C+ EA A EF + + G +
Sbjct: 6 RPQVGFATNNVKETVLSKLRAEQSSNEYITTLCKQKLFNEAIKAFEFLQKKT-GFCLTLS 64
Query: 82 TFVTLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM 124
T+ L+S C+ S ++ + +L+MY K G + A VFD M
Sbjct: 65 TYAYLISACSYLRSLEHGRKIHDHMLKSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAM 124
Query: 125 --RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182
R WT+++ G+ + ALE++ M SGV PD T S++ C+++ +G+G
Sbjct: 125 PERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGR 184
Query: 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG 242
+H +V K +F ++ N L+ +Y++ I A VF RM R L+SW S+I GF+ G
Sbjct: 185 QLHAHVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLG 244
Query: 243 FVGEALEYFN-LMQKGVFKTDEVSFTGALTACS 274
+ EAL YF ++ +GV+ +E F +ACS
Sbjct: 245 YELEALCYFKEMLHQGVYLPNEFIFGSVFSACS 277
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 121/267 (45%), Gaps = 20/267 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WTS I+ + ++G A + +M G P TF +++ C+
Sbjct: 130 VSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAH 189
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+++ AL+ MY K + A VF M D W +++ GF + Y EA
Sbjct: 190 VLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEA 249
Query: 147 LEYFRVMQISGVE-PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
L YF+ M GV P+ SV + C+++ G +H K +V +L D
Sbjct: 250 LCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCD 309
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + AR VF ++ + LV+WN+II GFA G EA+ +F+ M+ DE++
Sbjct: 310 MYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEIT 369
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKI 292
L AC+ + G+Q + K+
Sbjct: 370 VRSLLCACTSPSELYQGMQVHGYINKM 396
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 3/176 (1%)
Query: 111 FGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQI-SGVEPDYLTIISVL 169
F ++ V +R + K+ F EA++ F +Q +G T ++
Sbjct: 11 FATNNVKETVLSKLRAEQSSNEYITTLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLI 70
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
+ C+ +R+L G +H ++ K ++ + N ++++Y + G ++ A++VF M +R +V
Sbjct: 71 SACSYLRSLEHGRKIHDHMLKSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAMPERNVV 130
Query: 230 SWNSIIVGFAVNGFVGEALE-YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
SW S+I G++ NG G ALE YF ++Q GV D+ +F + ACS G I G Q
Sbjct: 131 SWTSVIAGYSQNGQGGNALEFYFQMLQSGVM-PDQFTFGSIIKACSSLGDIGLGRQ 185
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 53/320 (16%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF---- 93
S++ + + WTS I+ + R+ EA F M +G P +T + +LS CA
Sbjct: 197 SQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLE 256
Query: 94 --------------PSNNVMVSTALLDMYAKFGRMDLATVVFDVM-RGC--DFWTALLNG 136
P++ +V AL+DMYAK G A VFD + RG W A+++G
Sbjct: 257 LGRSLHLLVEEKGMPTSENLV-VALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDG 315
Query: 137 FVKRDYFE-------------------------------EALEYFRVMQISGVEPDYLTI 165
+ K + + EAL F M+ + D T+
Sbjct: 316 YCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTV 375
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
+++L CA++ L G +H + ++ + ++ + L+D+Y + G ++ A VFQRM K
Sbjct: 376 VNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGK 435
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
R + +W ++I G A NG ALE+F M+ F+ + VS+ LTACSH+ L+ +G Y
Sbjct: 436 RDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLY 495
Query: 286 FDIMKKIYRVSPQIEHHGCI 305
FD M+ +Y + PQIEH+GC+
Sbjct: 496 FDEMRILYNIHPQIEHYGCM 515
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 21/223 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ + S ++ + SG + EA L F MR + + T V LL+ CA +
Sbjct: 338 ITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHAC 397
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
++ + TALLDMY K GR+D AT+VF M R WTA++ G + A
Sbjct: 398 IEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAA 457
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-LWMHRYVPKQDFKDNVRVCNTLMD 205
LE+F M+ G +P+ ++ I+VL C++ L G L+ + + ++D
Sbjct: 458 LEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMID 517
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEA 247
+ R G ++ A + + M + V W SI+ V+ + A
Sbjct: 518 LLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLA 560
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 18/184 (9%)
Query: 111 FGRMDLATVVFD-VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT---II 166
F RM +T +FD +R C + R + FR M+ +GV PD T +
Sbjct: 60 FDRMPPSTFLFDTALRAC----SRAGSDPHRPFL-----LFRRMRRAGVRPDGFTFHFLF 110
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR-VCNTLMDVYSRFGCIEFARQVFQRMHK 225
+ + +L + +H + V N+L+ +Y R G AR+ F +H
Sbjct: 111 KCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHV 170
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
+ V+W +I G A G + + L+ D +S+T + A S A + +
Sbjct: 171 KDAVAWTMLISGLAKMGMLCDT----QLLLSQAPVRDVISWTSLIAAYSRANRAREAVGC 226
Query: 286 FDIM 289
F M
Sbjct: 227 FKTM 230
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 129/205 (62%), Gaps = 2/205 (0%)
Query: 103 ALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
+++D Y K G +++A +F+ M R WT++++G V +EAL F MQ +G++
Sbjct: 189 SMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKL 248
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D + ++S L CA++ L G W+H Y+ K + + + + L+D+Y++ G +E A +VF
Sbjct: 249 DNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVF 308
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
++M ++ + W ++I G+A++G EALE+F MQ + ++++FTG LTACSHAGL+
Sbjct: 309 RKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVH 368
Query: 281 DGLQYFDIMKKIYRVSPQIEHHGCI 305
+ F+ M++I+ P IEH+GC+
Sbjct: 369 EAKLLFESMERIHGFKPSIEHYGCM 393
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 21/218 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
+ WTS IS +G EA F RM+ G ++ V+ L CAD
Sbjct: 216 ISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAY 275
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+ ++ L+DMYAK G ++ A VF M +G WTA+++G+ EA
Sbjct: 276 IKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREA 335
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNVRVCNTLMD 205
LE+F MQ +GVEP+ +T +L C++ + + + + FK ++ ++D
Sbjct: 336 LEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVD 395
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
+ R G ++ A ++ + M K W +++ ++G
Sbjct: 396 LLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 433
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Query: 112 GRMDLATVVFD-VMRGCDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
G + A VFD + R F W ++ G+ EEAL + M V + T +L
Sbjct: 66 GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLL 125
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
C+++ L +H ++ K F + N+L++VYS+ G I+ AR +F ++ +R V
Sbjct: 126 KACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTV 185
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
SWNS+I G+ G + A E FN M + + +S+T ++ C AG ++ L F M
Sbjct: 186 SWNSMIDGYTKCGEIEMAYEIFNHMP----ERNIISWTSMISGCVGAGKPKEALNLFHRM 241
Query: 290 K 290
+
Sbjct: 242 Q 242
>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
Length = 629
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 143/280 (51%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
++ W++ I+ + ++G A F++M G P+ TFV +L+ +D +
Sbjct: 180 SITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHG 239
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
+ V +AL+DMYAK G + A FD + D WTA+++G V+ EE
Sbjct: 240 LMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEE 299
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL + M G+ P TI S L CA + L G +H + K V + L
Sbjct: 300 ALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALST 359
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ G +E VF+R+ R +++WNSII GF+ NG AL+ F M+ D ++
Sbjct: 360 MYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNIT 419
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L ACSH GL++ G +YF +M K Y ++P+++H+ C+
Sbjct: 420 FINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACM 459
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 3/200 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+NV V T+LL+MY K G + A VFD M R W+ ++ G+ EEA + FR+M
Sbjct: 45 SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 104
Query: 154 -QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
+ E +VL+ + L +G MH + K D V V N+L+ +Y++ GC
Sbjct: 105 LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGC 164
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+ A VF+ +R ++W+++I G+A NG A+ F+ M F E +F G L A
Sbjct: 165 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNA 224
Query: 273 CSHAGLIEDGLQYFDIMKKI 292
S G + G Q +M K+
Sbjct: 225 SSDLGALAVGKQAHGLMVKL 244
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 129/205 (62%), Gaps = 2/205 (0%)
Query: 103 ALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
+++D Y K G +++A +F+ M R WT++++G V +EAL F MQ +G++
Sbjct: 189 SMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKL 248
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D + ++S L CA++ L G W+H Y+ K + + + + L+D+Y++ G +E A +VF
Sbjct: 249 DNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVF 308
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
++M ++ + W ++I G+A++G EALE+F MQ + ++++FTG LTACSHAGL+
Sbjct: 309 RKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVH 368
Query: 281 DGLQYFDIMKKIYRVSPQIEHHGCI 305
+ F+ M++I+ P IEH+GC+
Sbjct: 369 EAKLLFESMERIHGFKPSIEHYGCM 393
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 21/218 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
+ WTS IS +G EA F RM+ G ++ V+ L CAD
Sbjct: 216 ISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAY 275
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+ ++ L+DMYAK G ++ A VF M +G WTA+++G+ EA
Sbjct: 276 IKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREA 335
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNVRVCNTLMD 205
LE+F MQ +GVEP+ +T +L C++ + + + + FK ++ ++D
Sbjct: 336 LEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVD 395
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
+ R G ++ A ++ + M K W +++ ++G
Sbjct: 396 LLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 433
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 6/181 (3%)
Query: 112 GRMDLATVVFD-VMRGCDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
G + A VFD + R F W ++ G+ EEAL + M V + T +L
Sbjct: 66 GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLL 125
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
C+++ +H ++ K F + N+L++VYS+ G I+ AR +F ++ +R V
Sbjct: 126 KACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTV 185
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
SWNS+I G+ G + A E FN M + + +S+T ++ C AG ++ L F M
Sbjct: 186 SWNSMIDGYTKCGEIEMAYEIFNHMP----ERNIISWTSMISGCVGAGKPKEALNLFHRM 241
Query: 290 K 290
+
Sbjct: 242 Q 242
>gi|242066372|ref|XP_002454475.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
gi|241934306|gb|EES07451.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
Length = 706
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 130/218 (59%), Gaps = 7/218 (3%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
FPS + + +L+ MYA+F ++D A VF+ M+ D W +++ K D EA+E F
Sbjct: 341 FPS--ISIENSLMGMYARFEQIDAAHFVFEGMKVKDIVSWNTIISCLAKSDRVNEAMELF 398
Query: 151 RVMQIS--GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
V+ + G+ PD++T++S+L C+N L G +H Y+ K F +V +CN L+ +Y+
Sbjct: 399 SVLHAAAGGLAPDFVTVLSILQACSNAGLLHQGQMLHGYIMKSGFVYDVSICNALITMYA 458
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVSFT 267
+ G I+FA +F+RM + LVSWNS+I + ++G AL F+ L G + ++F
Sbjct: 459 KLGRIDFAEMIFERMDIKDLVSWNSMINAYGMHGDGHLALRVFHQLKDAGTPVPNAITFV 518
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++ACSH+GLI +G + F+ M + + + P ++H+ C+
Sbjct: 519 SVISACSHSGLISEGYKCFESMGRDHSIEPSMDHYACV 556
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 125/264 (47%), Gaps = 29/264 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALE-----FTRMRLYGTNPSHITFVTLLSGCADFPSNNVM 99
V WT+ IS GC+L LE F M G P+++T ++++ C+
Sbjct: 202 VVSWTAIIS-----GCVLNGMLEEGLEVFVMMLEDGVLPNNVTMLSVIQACS-------- 248
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFR--VMQISG 157
L+ F + V+ ++ +L+ + K + EEA+ FR ++
Sbjct: 249 ----LMGASELFSPVHALVVLLELEHDASVVNSLIMMYAKNGFVEEAIWLFRGFYLKSGN 304
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
V + + +VL C ++ G+ +H + K ++ + N+LM +Y+RF I+ A
Sbjct: 305 VCSNEDVLAAVLYGCTISGSVKNGVGVHAHTIKIGAFPSISIENSLMGMYARFEQIDAAH 364
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ--KGVFKTDEVSFTGALTACSH 275
VF+ M + +VSWN+II A + V EA+E F+++ G D V+ L ACS+
Sbjct: 365 FVFEGMKVKDIVSWNTIISCLAKSDRVNEAMELFSVLHAAAGGLAPDFVTVLSILQACSN 424
Query: 276 AGLIEDG-LQYFDIMKK--IYRVS 296
AGL+ G + + IMK +Y VS
Sbjct: 425 AGLLHQGQMLHGYIMKSGFVYDVS 448
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 7/202 (3%)
Query: 86 LLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
L SG P + + +LL Y + G + A + D R + +L++ +
Sbjct: 53 LKSGALRSPQAPLAATNSLLHAYLQCGLLSRALRLLDGTPRRDAATYASLISAHCRLGAP 112
Query: 144 EEALEYFRVM-----QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+AL F M + V P+ T +VL C R +G +H Y+ F +
Sbjct: 113 LDALRAFLDMLDWGCSDAAVRPNEFTAAAVLQACGLARDERLGRMVHGYLVAGGFCGDPF 172
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V +L+++Y++ G + AR++ + R +VSW +II G +NG + E LE F +M +
Sbjct: 173 VVGSLVNMYAKAGDVVSARRLVLGLPCRDVVSWTAIISGCVLNGMLEEGLEVFVMMLEDG 232
Query: 259 FKTDEVSFTGALTACSHAGLIE 280
+ V+ + ACS G E
Sbjct: 233 VLPNNVTMLSVIQACSLMGASE 254
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 65/266 (24%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTN-----PSHITFVTLLSGC------------ 90
+ S IS HCR G L+A F M +G + P+ T +L C
Sbjct: 99 YASLISAHCRLGAPLDALRAFLDMLDWGCSDAAVRPNEFTAAAVLQACGLARDERLGRMV 158
Query: 91 -----ADFPSNNVMVSTALLDMYAKFG------RMDLATVVFDVMRGCDFWTALLNGFVK 139
A + V +L++MYAK G R+ L DV+ WTA+++G V
Sbjct: 159 HGYLVAGGFCGDPFVVGSLVNMYAKAGDVVSARRLVLGLPCRDVVS----WTAIISGCVL 214
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
EE LE F +M GV P+ +T++SV+ C
Sbjct: 215 NGMLEEGLEVFVMMLEDGVLPNNVTMLSVIQAC--------------------------- 247
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN--LMQKG 257
+LM F + + + H ++V NS+I+ +A NGFV EA+ F ++ G
Sbjct: 248 --SLMGASELFSPVHALVVLLELEHDASVV--NSLIMMYAKNGFVEEAIWLFRGFYLKSG 303
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGL 283
++E L C+ +G +++G+
Sbjct: 304 NVCSNEDVLAAVLYGCTISGSVKNGV 329
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 123/199 (61%), Gaps = 2/199 (1%)
Query: 109 AKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
AK G +D + +FD M R W ++++G+V+ EAL+ F MQ ++P T++
Sbjct: 202 AKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMV 261
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S+LN A + L G W+H Y+ K +F+ NV V +++D+Y + G I A QVF+ +
Sbjct: 262 SLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLK 321
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
L SWN++I+G A+NG EA++ F+ ++ + D+V+F G LTAC+++GL++ +YF
Sbjct: 322 GLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYF 381
Query: 287 DIMKKIYRVSPQIEHHGCI 305
+M K Y++ P I+H+ C+
Sbjct: 382 SLMSKTYKIEPSIKHYSCM 400
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 21/224 (9%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ TV W S IS + R+G + EA F +M+ PS T V+LL+ A +
Sbjct: 219 LRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEW 278
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDV--MRGCDFWTALLNGFVKRDY 142
NV+V+ +++DMY K G + A VF++ ++G W ++ G
Sbjct: 279 IHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGC 338
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCN 201
EA++ F ++ S + PD +T + VL C + + K + +++ +
Sbjct: 339 ENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYS 398
Query: 202 TLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV 244
++D R G +E A ++ + M + W+S++ +G V
Sbjct: 399 CMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNV 442
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 34/214 (15%)
Query: 112 GRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI-SGVEPDYLTIISV 168
G ++ A +VF + + W ++ GF + A+ F M I S V+P LT SV
Sbjct: 72 GDINYAYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSV 131
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS-------------------- 208
A + G +H V K + + + NT++ +Y+
Sbjct: 132 FKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDI 191
Query: 209 -----------RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257
+ G ++ +R++F M R VSWNS+I G+ NG + EAL+ F MQ+
Sbjct: 192 VAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEE 251
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
K E + L A + G ++ G D ++K
Sbjct: 252 RIKPSEFTMVSLLNASARLGALKQGEWIHDYIRK 285
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 152/281 (54%), Gaps = 20/281 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYG-TNPSHITFVTLLSGCADFPSN------- 96
T W S I +S ++A + + +M + P TF +L C +
Sbjct: 69 TEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVH 128
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+V+V T L+ Y+ G + +A VFD M D W A+++ F ++ +
Sbjct: 129 GSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQ 188
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL+ + M+ V+ D T++ +++ CA++ L IG+ MHR+ + ++ V N L+
Sbjct: 189 EALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALI 248
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G ++ A +F RM ++ + +WNS+IVG+ V+G EA+ F M + + + V
Sbjct: 249 DMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPV 308
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L CSH GL+++G++YF++M +R+ P+++H+GC+
Sbjct: 309 TFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCL 349
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 21/212 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV------- 98
V W + IS + G EA + +MR + T V L+S CA + N+
Sbjct: 172 VAWNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRF 231
Query: 99 ----------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
V AL+DMYAK G +D A ++FD M+ D W +++ G+ EA
Sbjct: 232 ARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEA 291
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMD 205
+ F+ M + ++P+ +T + +L C++ + G+ + + K K V+ L+D
Sbjct: 292 IYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVD 351
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+Y R G ++ A ++ V W I++G
Sbjct: 352 LYGRAGKLDKALEIVSNSSHNDSVLWR-ILLG 382
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD--VYSRFGCIEFARQVFQ 221
I+++L C +++ L +H +V +V + N L++ S G + +A+ +F
Sbjct: 6 AILALLQGCNSLKRL---RKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFH 62
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTAC 273
+M +WNSII GFA + +A+ ++N M F D +F+ L AC
Sbjct: 63 QMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKAC 115
>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 142/281 (50%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
+ W + I H ++G ++A + M G P + V+LL C
Sbjct: 481 SVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIH 540
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
N V+ +LL +Y + F+ M + W A+L+G+ + +
Sbjct: 541 GFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPN 600
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL FR M G+EPD + I S+L C+ + LG+G +H + K ++ V +LM
Sbjct: 601 EALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLM 660
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G + ++++F R++ + + SWN +I GF V+G +A+E F M++ + D
Sbjct: 661 DMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRF 720
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L AC HAGL+ +GL Y M+ +Y++ P++EH+ C+
Sbjct: 721 TFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACV 761
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 122/251 (48%), Gaps = 24/251 (9%)
Query: 47 QWTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFPS---------- 95
QW + +S + R+ EA F + + P + TF L+ C
Sbjct: 176 QWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGM 235
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++ V A++ +Y K G +D A +FD M + W +L+ GF + ++ EA
Sbjct: 236 AVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEA 295
Query: 147 LEYFRVMQISG--VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
FR + SG + PD T++++L VC+ + +G+ +H K + VCN L+
Sbjct: 296 YRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALI 355
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN--LMQKGVFKTD 262
D+YS+ GC+ A +F+++ +++VSWNS+I ++ GFV E + M++ + + +
Sbjct: 356 DMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVN 415
Query: 263 EVSFTGALTAC 273
EV+ L AC
Sbjct: 416 EVTILNLLPAC 426
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 118/261 (45%), Gaps = 25/261 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTN--PSHITFVTLLSGCADFPSNNV----- 98
+ W S I +G LEA F + G P T VTLL C+ + +V
Sbjct: 277 ISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIH 336
Query: 99 ------------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
MV AL+DMY+K G + A ++F + W +++ + + +
Sbjct: 337 GMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVF 396
Query: 145 EALEYFRVMQISG--VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
E + R M + +E + +TI+++L C L +H Y + F+ + N
Sbjct: 397 ETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNA 456
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLMQKGVFKT 261
+ Y++ G + FA VF M+ +++ SWN++I G A NG +AL+ YF + + G+
Sbjct: 457 FIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGIL-P 515
Query: 262 DEVSFTGALTACSHAGLIEDG 282
D+ S L AC GL++ G
Sbjct: 516 DDFSIVSLLLACGRLGLLQYG 536
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 25/255 (9%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGT--NPSHITFVTLLSGCADFPS------ 95
+ V W S I + R G + E +M + + +T + LL C +
Sbjct: 378 SVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRA 437
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
+++ A + YAK G + A VF M + W A++ G +
Sbjct: 438 LHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGD 497
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+AL+++ M G+ PD +I+S+L C + L G +H +V + + N V +
Sbjct: 498 PIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVS 557
Query: 203 LMDVYSRFGCIE--FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
L+ +Y F C + + R F+ M + V WN+++ G++ N EAL F M +
Sbjct: 558 LLSLY--FHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLE 615
Query: 261 TDEVSFTGALTACSH 275
DE++ L ACS
Sbjct: 616 PDEIAIASILGACSQ 630
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
DF N R L+ +YS G +R VF R+ + L WN+++ G+ N EA+ F
Sbjct: 142 DFVLNTR----LITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTF 197
Query: 252 -NLMQKGVFKTDEVSFTGALTACS 274
L+ F+ D +F + AC+
Sbjct: 198 LELISVTEFQPDNFTFPCLIKACT 221
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 140/273 (51%), Gaps = 13/273 (4%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA----------DFP 94
V W S I + R G I + AL+ S V LS C P
Sbjct: 178 VVLWNSLIDGYARCGEI-DIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMP 236
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
N++ A+++ Y K G D A +F M D W ++ G+ F +A++ F +
Sbjct: 237 CRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFM 296
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M G P + T++SVL+ + + LG G W+H Y+ K F+ + + +L+++Y++ GC
Sbjct: 297 MLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGC 356
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
IE A VF+ + K+ + W +IIVG ++G AL F M K K + + F G L A
Sbjct: 357 IESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNA 416
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
C+HAGL++DG QYFD+M Y++ P +EH+GC+
Sbjct: 417 CNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCL 449
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 9/198 (4%)
Query: 96 NNVMVSTALLDMYA--KFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFR 151
N+ VS+ LL +Y+ K + A +FD + R W ++ +V+ + + + F
Sbjct: 43 NHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFH 102
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
+ + PD T+ V+ CA + + G +H K F +V V +L+++YS+ G
Sbjct: 103 EL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCG 161
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
I+ AR+VF M + +V WNS+I G+A G + AL+ F M + D S+T +
Sbjct: 162 EIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMP----ERDAFSWTVLVD 217
Query: 272 ACSHAGLIEDGLQYFDIM 289
S G +E + FD M
Sbjct: 218 GLSKCGKVESARKLFDQM 235
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 145/277 (52%), Gaps = 19/277 (6%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------- 94
+ S I + G L+A L + RM L PS TF +++ CAD
Sbjct: 76 FNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVF 135
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
+++ V AL+ YAK +A VFD M R W ++++G+ + EA+E
Sbjct: 136 VSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVE 195
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M+ S VEPD T +SVL+ C+ + +L G W+H + NV + +L++++S
Sbjct: 196 VFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFS 255
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
R G + AR VF M + +V W ++I G+ ++G+ EA+E F+ M+ + V+F
Sbjct: 256 RCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVA 315
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+AC+HAGLI++G F MK+ Y V P +EHH C+
Sbjct: 316 VLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCM 352
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 106/215 (49%), Gaps = 24/215 (11%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+ V W S IS + ++G EA F +MR P TFV++LS C+ S
Sbjct: 173 SIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLH 232
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFE 144
NV+++T+L++M+++ G + A VF M + WTA+++G+ Y
Sbjct: 233 DCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGV 292
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK--DNVRVCNT 202
EA+E F M+ GV P+ +T ++VL+ CA+ + G + + KQ++ V
Sbjct: 293 EAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASM-KQEYGVVPGVEHHVC 351
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVS--WNSII 235
++D++ R G + A Q + ++ LV W +++
Sbjct: 352 MVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAML 386
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V WT+ IS + G +EA F RM+ G P+ +TFV +LS CA L+
Sbjct: 276 VLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAH---------AGLI 326
Query: 106 DMYAKFGRMDLATVV--FDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
D GR A++ + V+ G + +++ F + EA ++ + + + P
Sbjct: 327 DE----GRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVW 382
Query: 164 TIISVLNVCANVRTLGIGL 182
T ++L C + +G+
Sbjct: 383 T--AMLGACKMHKNFDLGV 399
>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 148/283 (52%), Gaps = 24/283 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL---LSGCADFPSN------ 96
V W++ I + + I EA F +M L N + +T V + L GCA F
Sbjct: 272 VTWSAMIGGYVENEMIKEAGEVFFQM-LVNDNVAMVTPVAIGLILMGCARFGDLSGGRCV 330
Query: 97 -----------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYF 143
++ V ++ YAK+G + A F + D + +L+ G V
Sbjct: 331 HCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRP 390
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EE+ F M+ SG+ PD T++ VL C+++ LG G H Y + N +CN L
Sbjct: 391 EESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNAL 450
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
MD+Y++ G ++ A++VF MHKR +VSWN+++ GF ++G EAL FN MQ+ DE
Sbjct: 451 MDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDE 510
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKK-IYRVSPQIEHHGCI 305
V+ L+ACSH+GL+++G Q F+ M + + V P+I+H+ C+
Sbjct: 511 VTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCM 553
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 101/198 (51%), Gaps = 6/198 (3%)
Query: 90 CADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEAL 147
C+DF + ++ V TAL+D YAK G +++A VFD M D W A+++GF + +
Sbjct: 131 CSDF-ATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVI 189
Query: 148 EYFRVMQ-ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
F M+ I G+ P+ TI+ + L G +H Y + F +++ V ++DV
Sbjct: 190 GLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDV 249
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF--NLMQKGVFKTDEV 264
Y++ CI +AR+VF K+ V+W+++I G+ N + EA E F L+ V V
Sbjct: 250 YAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPV 309
Query: 265 SFTGALTACSHAGLIEDG 282
+ L C+ G + G
Sbjct: 310 AIGLILMGCARFGDLSGG 327
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 101/202 (50%), Gaps = 7/202 (3%)
Query: 86 LLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF----WTALLNGFVKRD 141
LL S+ V+V+ L +YA ++LA VFD + W ++ + D
Sbjct: 25 LLKRSLTLSSSTVLVN--LTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASND 82
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
+ E+AL+ + M SGV P T VL CA +R + G +H +V DF ++ VC
Sbjct: 83 FAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCT 142
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-GVFK 260
L+D Y++ G +E A +VF M KR +V+WN++I GF+++ + + + F M++
Sbjct: 143 ALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLS 202
Query: 261 TDEVSFTGALTACSHAGLIEDG 282
+ + G A AG + +G
Sbjct: 203 PNLSTIVGMFPALGRAGALREG 224
>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
Length = 700
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 149/285 (52%), Gaps = 20/285 (7%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------- 92
STID V WT+ I + + G EA FT R P+ +T ++LS CA
Sbjct: 300 STIDL-VSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMG 358
Query: 93 ---------FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
S + AL+DMYAK + A VF+ + D W ++++G+ +
Sbjct: 359 RSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNG 418
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVC 200
Y EALE F M+ V PD +T++SVL+ CA+V +G +H Y K +V V
Sbjct: 419 YAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVG 478
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
L++ Y++ G E AR +F M ++ ++W+++I G+ + G +LE F M K +
Sbjct: 479 TALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLE 538
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+EV FT L+ACSH+G++ +G +YF+ M ++Y P ++H+ C+
Sbjct: 539 PNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACM 583
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 126/252 (50%), Gaps = 22/252 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC--------------- 90
V WTS I + ++ C+ E + F RMR + T +L++ C
Sbjct: 204 VCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGY 263
Query: 91 ---ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ F N+ +V T LLD+Y K G + A VFD + D WTA++ G+ +R Y E
Sbjct: 264 VIKSGFDLNSFLV-TPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPRE 322
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL+ F + + P+ +T SVL+ CA +L +G +H K +D N L+D
Sbjct: 323 ALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSED-ATFENALVD 381
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ I AR VF+ + + +++WNSII G+ NG+ EALE F+ M+ D ++
Sbjct: 382 MYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAIT 441
Query: 266 FTGALTACSHAG 277
L+AC+ G
Sbjct: 442 LVSVLSACASVG 453
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 18/232 (7%)
Query: 69 TRMRLYGTNPSHITFVTLLSGCADF----------------PSNNVMVSTALLDMYAKFG 112
TR+R ++ F +L C++ S + V T L+DMYAK
Sbjct: 127 TRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPDSFVLTGLVDMYAKCR 186
Query: 113 RMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN 170
++ + VFD + R WT+++ G+V+ D +E L F M+ VE + T+ S++
Sbjct: 187 EVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVT 246
Query: 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS 230
C + L G W+H YV K F N + L+D+Y + G I A VF + LVS
Sbjct: 247 ACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVS 306
Query: 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
W ++IVG+A G+ EAL+ F + + V+ + L+AC+ G + G
Sbjct: 307 WTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMG 358
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 99/191 (51%), Gaps = 4/191 (2%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
S +++ T L+ +Y FG ++ A ++FD +R D W ++ + D + E ++++
Sbjct: 68 SEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNT 127
Query: 153 -MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
++ E D + VL C+ +R G +H + K D+ V L+D+Y++
Sbjct: 128 RLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPDSF-VLTGLVDMYAKCR 186
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
+E +R+VF + R +V W S+IVG+ N + E L FN M++G+ + ++ + +T
Sbjct: 187 EVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVT 246
Query: 272 ACSHAGLIEDG 282
AC+ G + G
Sbjct: 247 ACTKLGALHQG 257
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S+L +C V +L +H + +++ L+ +Y FG +E AR +F R+
Sbjct: 44 SLLGICKTVSSLRK---IHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNP 100
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNL-MQKGVFKTDEVSFTGALTACSHAGLIEDG 282
L SW +I + +N E ++++N ++K + + D V F+ L ACS ++G
Sbjct: 101 DLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEG 157
>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 117/192 (60%), Gaps = 2/192 (1%)
Query: 116 LATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173
+A +VF+ MR D W ++ G+V++ FEEAL FR M S VEPD T SV+N CA
Sbjct: 94 VAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFASVINGCA 153
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
+ L W+H + ++ + N + + L+D+YS+ G I+ A+++F + + + WN+
Sbjct: 154 KLGALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWNA 213
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
+I G AV+G +A++ F M+ D ++F G LTACSH GL+++G +YFD+M+ Y
Sbjct: 214 MISGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSRY 273
Query: 294 RVSPQIEHHGCI 305
V P IEH+G +
Sbjct: 274 SVQPHIEHYGAM 285
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 29/215 (13%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V W + I + R EA F M P TF ++++GCA +
Sbjct: 108 VTWNTMIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFASVINGCAKLGALKHAQWVHEL 167
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
N ++S+AL+DMY+K G++ A +FD ++ + W A+++G +A
Sbjct: 168 LIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWNAMISGLAVHGLALDA 227
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-----LWMHRYVPKQDFKDNVRVCN 201
++ F M++ V PD +T + +L C++ + G L RY + ++
Sbjct: 228 IKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSRY----SVQPHIEHYG 283
Query: 202 TLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSII 235
++D+ R G +E A + + M + +V W +++
Sbjct: 284 AMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRALL 318
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N ++D R A+ VF +M R +V+WN++I G+ EAL F M K +
Sbjct: 80 NLIIDKLMRTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVE 139
Query: 261 TDEVSFTGALTACSHAGLIE 280
D+ +F + C+ G ++
Sbjct: 140 PDKYTFASVINGCAKLGALK 159
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 167/326 (51%), Gaps = 29/326 (8%)
Query: 9 ILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTI-------DTTVQWTSSISRHCRSGCI 61
+ +Q F PH + ++ L +S+ + + + + T W S I +S
Sbjct: 420 LWKQRFGPHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSP 479
Query: 62 LE-AALEFTRMRLYGTN--PSHITFVTLLSGCADFPSN-----------------NVMVS 101
L+ A+ F L ++ P TF LL C + +V++
Sbjct: 480 LQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLC 539
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVE 159
T L+ YA G ++ A VF+ M D W ++++ + + EEAL+ + M+IS V
Sbjct: 540 TNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVG 599
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
D T++S+L+ CA+V L +G+ MHR+ ++ +N+ V N L+D+Y++ G + A +
Sbjct: 600 FDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSI 659
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F M KR + +WNS+IVG+ V+G EA+ +F M + + ++F G L CSH GL+
Sbjct: 660 FNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLV 719
Query: 280 EDGLQYFDIMKKIYRVSPQIEHHGCI 305
++G+QYF +M + + P I+H+GC+
Sbjct: 720 KEGVQYFHMMSSEFNLKPGIKHYGCM 745
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 154/307 (50%), Gaps = 40/307 (13%)
Query: 2 NSPAIATILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCI 61
N+ I+ + + ++ +N N+ +R S W S I+ +C+ G I
Sbjct: 79 NNAMISALSKHGYVEEARNLFDNMTERNSCS---------------WNSMITCYCKLGDI 123
Query: 62 LEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF 121
A L F C P +V+ A++D Y K ++ A +F
Sbjct: 124 NSARLMFD--------------------CN--PVKDVVSWNAIIDGYCKSKQLVAAQELF 161
Query: 122 DVM---RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL 178
+M R W +++ +V+ F A+ F+ MQ V+P +T++S+L+ CA++ L
Sbjct: 162 LLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGAL 221
Query: 179 GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF 238
+G W+H Y+ + K +V + N L+D+Y + G +E A VF + ++ + WNSIIVG
Sbjct: 222 DMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGL 281
Query: 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ 298
+NG EA+ F +M+K K D V+F G L+ CSH+GL+ G +YF M +Y + P
Sbjct: 282 GMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPG 341
Query: 299 IEHHGCI 305
+EH+GC+
Sbjct: 342 VEHYGCM 348
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 11/189 (5%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVKRDYFEEALEYFRVMQ 154
++++ T LLD YAK G + A VF M D A+++ K Y EEA F M
Sbjct: 44 DMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNM- 102
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
E + + S++ + + M P +D V N ++D Y + +
Sbjct: 103 ---TERNSCSWNSMITCYCKLGDINSARLMFDCNPVKD----VVSWNAIIDGYCKSKQLV 155
Query: 215 FARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A+++F M R V+WN++I + G G A+ F MQ K EV+ L+AC
Sbjct: 156 AAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSAC 215
Query: 274 SHAGLIEDG 282
+H G ++ G
Sbjct: 216 AHLGALDMG 224
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
V P + +L CA +G H + K F+ ++ + L+D Y++ G ++ A+
Sbjct: 6 VLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAK 65
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+VF M +R +V+ N++I + +G+V EA F+ M + + S+ +T G
Sbjct: 66 RVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMT----ERNSCSWNSMITCYCKLG 121
Query: 278 LIEDGLQYFD 287
I FD
Sbjct: 122 DINSARLMFD 131
>gi|242033481|ref|XP_002464135.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
gi|241917989|gb|EER91133.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
Length = 576
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 127/211 (60%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ +LL MYAK G ++ AT++FD ++ + ALL+G+V+ EEA F+ MQ
Sbjct: 340 DLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQ 399
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V+PD T++S++ C+++ L G H V + +CN+L+D+Y++ G I+
Sbjct: 400 ACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRID 459
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
+RQVF +M R +VSWN++I G+ ++G EA F M+ F+ D+V+F + ACS
Sbjct: 460 LSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACS 519
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H+GL+ +G +FD M Y + P++EH+ C+
Sbjct: 520 HSGLVTEGKHWFDTMTHKYGILPRMEHYICM 550
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 117/269 (43%), Gaps = 24/269 (8%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMR-LYGTNPSHITFVTLLSGCA----- 91
+K + V W + ++ + G A M+ G P+ T V+LL A
Sbjct: 158 AKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGAL 217
Query: 92 ---------------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALL 134
D V++ TALLDMYAK + A VF M R W+AL+
Sbjct: 218 FQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALI 277
Query: 135 NGFVKRDYFEEALEYFRVMQISGV-EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193
GFV D EA F+ M + G+ ++ S L VCA++ L +G +H + K
Sbjct: 278 GGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGI 337
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
++ N+L+ +Y++ G I A +F + + +S+ +++ G+ NG EA F
Sbjct: 338 HADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKK 397
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDG 282
MQ + D + + ACSH ++ G
Sbjct: 398 MQACNVQPDIATMVSLIPACSHLAALQHG 426
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 112/254 (44%), Gaps = 25/254 (9%)
Query: 63 EAALEFTRMRLY-GTNPSHITFVTLLSGCADFPS-----------------NNVMVSTAL 104
AA++ R LY P+ TF +L C+ ++ VSTAL
Sbjct: 81 HAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTAL 140
Query: 105 LDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQI-SGVEPD 161
+D+Y + R A VF MR W A+L G+ + A+ + MQ G+ P+
Sbjct: 141 IDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPN 200
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---VRVCNTLMDVYSRFGCIEFARQ 218
T++S+L + A L G +H Y + N V + L+D+Y++ + +A +
Sbjct: 201 ASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACR 260
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTACSHAG 277
VF M R V+W+++I GF + + EA F +++ +G+ S AL C+
Sbjct: 261 VFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLA 320
Query: 278 LIEDGLQYFDIMKK 291
+ G Q ++ K
Sbjct: 321 DLRMGTQLHALLAK 334
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 3/181 (1%)
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
L+ + G++ LA VFD + D + AL+ + R F A++ +R M V P+
Sbjct: 40 LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNK 99
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T VL C+ + L G +H + ++ V L+D+Y R A VF +
Sbjct: 100 YTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAK 159
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFTGALTACSHAGLIED 281
M R +V+WN+++ G+A +G A+ + MQ +G + + + L + G +
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQ 219
Query: 282 G 282
G
Sbjct: 220 G 220
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 153/311 (49%), Gaps = 53/311 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC----------------- 90
WT+ I + G + E+ +TRMR G P TF L C
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTI 169
Query: 91 ------ADFPSNNVMVS--------------------------TALLDMYAKFGRMDLAT 118
+D N M+ T L+ YAK+G M+ A+
Sbjct: 170 LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESAS 229
Query: 119 VVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR 176
+FD + D WTA++ G+ + +EALEYF+ MQ G+E D +T+ V++ CA +
Sbjct: 230 GLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLG 289
Query: 177 TLGIGLWMHRYVPKQDF--KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ W+ + F NV V + L+D+YS+ G + A +VF+ M +R + S++S+
Sbjct: 290 AVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSM 349
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I+G+A++G AL+ F+ M K + ++V+F G L+ACSHAGL+E G Q F M+K +
Sbjct: 350 ILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFG 409
Query: 295 VSPQIEHHGCI 305
V+P +H+ C+
Sbjct: 410 VAPSPDHYACM 420
>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
Length = 673
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 149/290 (51%), Gaps = 30/290 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
+ WT+ IS +G F M P+ T ++LS C+ S+
Sbjct: 148 ISWTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSL 207
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK-----RD 141
N+ ++ +L+ +Y K G +D A +F+ M + W A++ G + +D
Sbjct: 208 STKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKD 267
Query: 142 YFE------EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195
F EAL + + SG +PD T+ S+L VC+ + L G +H K F
Sbjct: 268 NFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLS 327
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
+V V L+D+Y + G IE AR+ F M RTL+SW S+I FA +G AL+ F M+
Sbjct: 328 DVVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFEDMR 387
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F+ ++++F G L ACSHAG++++ L+YF+IM+K Y++ P ++H+GC+
Sbjct: 388 LAGFRPNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCL 437
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 121/269 (44%), Gaps = 30/269 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WT+ ++ + ++ A F M G+ PS+ T L+ C+ S
Sbjct: 47 VVWTTLMTGYVQNSQPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAF 106
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++ + AL +Y+KFG +D + F D WT +++
Sbjct: 107 IIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMG 166
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F M VEP+ T+ SVL++C+ +++ +G+ +H K + N+R+ N+L+ +
Sbjct: 167 LRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYL 226
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVG-----------FAVNGFVGEALEYFNLMQ 255
Y + GCI+ A+ +F RM + L++WN++I G F+ EAL + +
Sbjct: 227 YLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLN 286
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ K D + + LT CS +E G Q
Sbjct: 287 RSGRKPDLFTLSSILTVCSRLAALEQGEQ 315
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 9/204 (4%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
V + L+++YAK G M A VFD + R WT L+ G+V+ E A+E F M SG
Sbjct: 17 VMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQPEVAVEVFGDMLESG 76
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
P T+ LN C+++ ++ +G H ++ K + + N L +YS+FG ++ +
Sbjct: 77 SFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSV 136
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+ F+ ++ ++SW +II NG G L F M + ++ + T L+ CS
Sbjct: 137 KAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCS--- 193
Query: 278 LIEDGLQYFDIMKKIYRVSPQIEH 301
+Q D+ +++ +S ++ H
Sbjct: 194 ----TIQSSDLGMQVHSLSTKLGH 213
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 24/206 (11%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
T + WTS I+ R G A F MRL G P+ ITFV +L+ C S+ MV A
Sbjct: 359 TLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAAC----SHAGMVDEA 414
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
L F M + VM D + L++ FV+ +EA + + M VEP+
Sbjct: 415 L----EYFEIMQKEYKIKPVM---DHYGCLVDMFVRLGRLDEAFDVIKRMD---VEPNEF 464
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT---LMDVY---SRFGCIEFAR 217
+ ++ C N +G Y +Q K R T L+++Y R+ + R
Sbjct: 465 IWLLLIAGCRNHGNEELGF----YAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVR 520
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGF 243
++ + L W+ I + V+ F
Sbjct: 521 RLMKEEKVGKLKDWSRISIKGEVHSF 546
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H +V K + V + L++VY++ G + AR+VF + +R +V W +++ G+ N
Sbjct: 2 VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQ 61
Query: 244 VGEALEYF-NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
A+E F ++++ G F ++ + + AL ACS I G Q+ + K YR+S
Sbjct: 62 PEVAVEVFGDMLESGSFPSN-FTLSIALNACSSLESITLGKQFHAFIIK-YRIS 113
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 149/312 (47%), Gaps = 52/312 (16%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV------ 98
V W + I + ++G + EA F MR G T V+LL C+ + V
Sbjct: 180 VVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHC 239
Query: 99 -----------MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK------ 139
++ ALLDMY K G + +A FD+M + WT++L K
Sbjct: 240 HMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDA 299
Query: 140 -RDYFE------------------------EALEYFRVMQISGVEPDYLTIISVLNVCAN 174
RD+FE E L+ + M+ G+ PD T+ VL+ C
Sbjct: 300 VRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQ 359
Query: 175 VRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
L G +H YV + +F D V + N+L+D+Y+R G ++ A +F M + ++SWN
Sbjct: 360 NGDLASGKMIHCYV-RDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNV 418
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
II A++G E + +F M F DE++F G L+ACSH GL+E G YF+ M ++Y
Sbjct: 419 IIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVY 478
Query: 294 RVSPQIEHHGCI 305
V P++EH+GC+
Sbjct: 479 NVEPEVEHYGCM 490
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 71/154 (46%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
+ L+ + D +EAL R + G+ P+ T+ VL C VR + L H V
Sbjct: 81 MYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHALAAHGVV 140
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K F + V N L+ ++ G + +R+ F M R +VSWN++I G+A G V EA
Sbjct: 141 VKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEAC 200
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
F M+ D + L ACS G +E G
Sbjct: 201 ALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVG 234
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 33/218 (15%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQI 155
+ V+ ALL +A G + + F M R W ++ G+ + EA F M+
Sbjct: 149 IFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRH 208
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY-------- 207
G+ D T++S+L C++ L +G +H ++ + + + N L+D+Y
Sbjct: 209 QGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWM 268
Query: 208 -----------------------SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
++ G ++ R F++M +R +VSWN++I + G +
Sbjct: 269 AHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRL 328
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
E L+ +N M+ DE + G L+AC G + G
Sbjct: 329 HETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASG 366
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 93/220 (42%), Gaps = 21/220 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
V W + IS + + G + E + RMR G P T +LS C
Sbjct: 313 VSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCY 372
Query: 92 ---DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+F V + +LLDMYA+ G++D A +F M + W ++ +E
Sbjct: 373 VRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQET 432
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNVRVCNTLMD 205
+ +FR M PD +T + +L+ C++ L G + + + + + V ++D
Sbjct: 433 VTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVD 492
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV 244
+ R G + A + + M K +V W +++ ++G V
Sbjct: 493 LLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNV 532
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 130/217 (59%), Gaps = 8/217 (3%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
D S NVM++ YAK G M+ A +FD + D W A++ G+V ++ALE
Sbjct: 209 DLVSWNVMITG-----YAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEM 263
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYS 208
F M+ G PD +T++S+L+ C ++ L G +H + + F+D +V + N L+D+Y+
Sbjct: 264 FEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYA 323
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G I A +VFQ M ++ + +WNS++ G A +G +++ F M+K + DE++F G
Sbjct: 324 KCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVG 383
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACSHAG +E+G QYFD+M+ Y + P I H+GC+
Sbjct: 384 VLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCM 420
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 22/221 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V W + I+ + G +A F MR G P +T ++LLS C D
Sbjct: 242 VTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCC 301
Query: 93 -----FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
F +V++ AL+DMYAK G + A VF MR D W ++L G + E+
Sbjct: 302 ISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEK 361
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLM 204
++ F M+ + PD +T + VL C++ + G + + + + N+R ++
Sbjct: 362 SIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMV 421
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV 244
D+ R G + A M + + W +++ ++G V
Sbjct: 422 DLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNV 462
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
W ++ G + A+ + M+ V PD T VL C + + +G +H V
Sbjct: 80 MWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRV 139
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
+ F+ N V NTL+ ++ G + AR +F KR +V+W+++ G+A G +G A
Sbjct: 140 FRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVAR 199
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+ F+ M D VS+ +T + G +E + FD + K
Sbjct: 200 QLFDEMP----VKDLVSWNVMITGYAKRGEMESARKLFDEVPK 238
>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 783
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 151/282 (53%), Gaps = 19/282 (6%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLL---SGCADFP----- 94
D + + + I + R G + A F +MR PS +TFV+LL S +D
Sbjct: 403 DDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQI 462
Query: 95 ---------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYF 143
S ++ +AL+D+Y+KF +D A +VF +M+ D W A++ G + +
Sbjct: 463 HGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERG 522
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EEA++ F +++SG+ P+ T ++++ V + + ++ G H + K + + N L
Sbjct: 523 EEAVKLFARLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNAL 582
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G IE R +F+ + ++ WNS+I +A +G EAL F +M+ + +
Sbjct: 583 IDMYAKCGFIEEGRLLFESTLGKDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNY 642
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F L+AC+HAGL+++GL +F+ MK Y V P EH+ +
Sbjct: 643 VTFVSVLSACAHAGLVDEGLHHFNSMKTKYAVEPGTEHYASV 684
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 118/264 (44%), Gaps = 25/264 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTN------PSHITFVTLLSGCADFPSN--- 96
V W S+IS + + G +A L F G P+ + L CA +
Sbjct: 97 VSWGSAISMYAQHGREDDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFG 156
Query: 97 --------------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKR 140
NV V TAL+++YAK GR+D A VFD + R WTA++ G+ +
Sbjct: 157 EQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQA 216
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
ALE F M + GV PD + S + C+ + + G +H Y + + + V
Sbjct: 217 GQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVV 276
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N L+D+Y + + AR++F M R LVSW ++I G+ N EA+ F + + ++
Sbjct: 277 NALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQ 336
Query: 261 TDEVSFTGALTACSHAGLIEDGLQ 284
D + T L +C I G Q
Sbjct: 337 PDVFACTSILNSCGSLAAIWQGRQ 360
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 122/265 (46%), Gaps = 19/265 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF------------ 93
V WT+ I+ + ++G A F RM L G P + S C+
Sbjct: 204 VTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQIHGY 263
Query: 94 -----PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
++ V AL+D+Y K R+ LA +FD M R WT ++ G+++ EA
Sbjct: 264 AYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEA 323
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ F + +G +PD S+LN C ++ + G +H +V K D + + V N L+D+
Sbjct: 324 MSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDM 383
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ + AR VF+ + + +S+N++I G+A G + A+E F M+ K ++F
Sbjct: 384 YAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTF 443
Query: 267 TGALTACSHAGLIEDGLQYFDIMKK 291
L S +E Q ++ K
Sbjct: 444 VSLLGVSSSRSDLELSKQIHGLIVK 468
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 94/210 (44%), Gaps = 11/210 (5%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ ++ LL Y+K GR+ A +FD M R W + ++ + + ++AL F
Sbjct: 64 DLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFP 123
Query: 155 ISGVE------PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
+G P+ + S L CA R G +H K NV V L+++Y+
Sbjct: 124 SAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYA 183
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G I+ A VF + R V+W ++I G++ G G ALE F M + D
Sbjct: 184 KAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLAS 243
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQ 298
A +ACS G +E G Q I YR + +
Sbjct: 244 AASACSGLGFVEGGRQ---IHGYAYRTAAE 270
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 141/287 (49%), Gaps = 52/287 (18%)
Query: 71 MRLYGTNPSHITFVTLLSGCADFPSN-----------------NVMVSTALLDMYAKFGR 113
M L G P+ +TF L CA F S +V TAL+DMYAK G
Sbjct: 1 MLLKGCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGV 60
Query: 114 MDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM----------QISG---- 157
+ LA VFD M R W +L+ G+ + E ALE F++M ISG
Sbjct: 61 LMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQN 120
Query: 158 ------------------VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
V P+ +TI SV + CA + L +G + Y N+ V
Sbjct: 121 GMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYV 180
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKR-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
NTL+++Y+R G I+ AR VF + KR L SWNS+++G AV+G EAL+ ++ M
Sbjct: 181 SNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEG 240
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D+V+F G + AC+H GL+ G Q F M+ + + P++EH+GC+
Sbjct: 241 IEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCM 287
>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
Length = 825
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 146/282 (51%), Gaps = 19/282 (6%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP-------- 94
D + W+ ISR+ +S +A F RM P+ + +L CA+
Sbjct: 315 DDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQI 374
Query: 95 ---------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYF 143
+ + V AL+D+YAK M+ + +F +R + W ++ G+ + +
Sbjct: 375 HNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFA 434
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
E+AL F+ M+ + V +T SVL CAN ++ + +H + K F ++ VCN+L
Sbjct: 435 EDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSL 494
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D Y++ GCI A +VF+ + + +VSWN+II G+A++G +ALE FN M K K ++
Sbjct: 495 IDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPND 554
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F L+ C GL+ GL F+ M +R+ P ++H+ CI
Sbjct: 555 VTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCI 596
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 123/268 (45%), Gaps = 23/268 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS----------------- 88
V + + + + G EAA F R++ G +H T+L
Sbjct: 116 VSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHAC 175
Query: 89 GCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEA 146
C N V ++L+D Y+ G + A VFD + + WTA+++ + + D E+A
Sbjct: 176 ACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDA 235
Query: 147 LEYFRVMQISGVEPDYLTIISVLN--VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
L F M+++G +P+ + SVL VC + LG G+ H K V L+
Sbjct: 236 LNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGI--HGCAVKTLCDTEPHVGGALL 293
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G IE AR VF+ + ++ W+ +I +A + +A E F M + +E
Sbjct: 294 DMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEF 353
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKI 292
S +G L AC++ ++ G Q +++ K+
Sbjct: 354 SLSGVLQACANVAFLDLGQQIHNLVIKL 381
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 4/188 (2%)
Query: 101 STALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
+ LL++YAK G + A +FD M R + L+ G+ R FEEA FR +Q G
Sbjct: 87 ANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGH 146
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
E ++ + ++L V + G+ +H K N V ++L+D YS G + AR
Sbjct: 147 EVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARC 206
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA--CSHA 276
VF + + V+W +++ ++ N +AL F+ M+ K + T L A C +
Sbjct: 207 VFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSS 266
Query: 277 GLIEDGLQ 284
++ G+
Sbjct: 267 AVLGKGIH 274
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 127/211 (60%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ +LL MYAK G ++ AT++FD ++ + ALL+G+V+ EEA F+ MQ
Sbjct: 340 DLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQ 399
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V+PD T++S++ C+++ L G H V + +CN+L+D+Y++ G I+
Sbjct: 400 ACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRID 459
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
+RQVF +M R +VSWN++I G+ ++G EA F M+ F+ D+V+F + ACS
Sbjct: 460 LSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACS 519
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H+GL+ +G +FD M Y + P++EH+ C+
Sbjct: 520 HSGLVTEGKHWFDTMTHKYGILPRMEHYICM 550
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 117/269 (43%), Gaps = 24/269 (8%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMR-LYGTNPSHITFVTLLSGCA----- 91
+K + V W + ++ + G A M+ G P+ T V+LL A
Sbjct: 158 AKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGAL 217
Query: 92 ---------------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALL 134
D V++ TALLDMYAK + A VF M R W+AL+
Sbjct: 218 FQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALI 277
Query: 135 NGFVKRDYFEEALEYFRVMQISGV-EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193
GFV D EA F+ M + G+ ++ S L VCA++ L +G +H + K
Sbjct: 278 GGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGI 337
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
++ N+L+ +Y++ G I A +F + + +S+ +++ G+ NG EA F
Sbjct: 338 HADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKK 397
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDG 282
MQ + D + + ACSH ++ G
Sbjct: 398 MQACNVQPDIATMVSLIPACSHLAALQHG 426
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 112/254 (44%), Gaps = 25/254 (9%)
Query: 63 EAALEFTRMRLY-GTNPSHITFVTLLSGCADFPS-----------------NNVMVSTAL 104
AA++ R LY P+ TF +L C+ ++ VSTAL
Sbjct: 81 HAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTAL 140
Query: 105 LDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQI-SGVEPD 161
+D+Y + R A VF MR W A+L G+ + A+ + MQ G+ P+
Sbjct: 141 IDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPN 200
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---VRVCNTLMDVYSRFGCIEFARQ 218
T++S+L + A L G +H Y + N V + L+D+Y++ + +A +
Sbjct: 201 ASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACR 260
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTACSHAG 277
VF M R V+W+++I GF + + EA F +++ +G+ S AL C+
Sbjct: 261 VFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLA 320
Query: 278 LIEDGLQYFDIMKK 291
+ G Q ++ K
Sbjct: 321 DLRMGTQLHALLAK 334
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 3/181 (1%)
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
L+ + G++ LA VFD + D + AL+ + R F A++ +R M V P+
Sbjct: 40 LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNK 99
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T VL C+ + L G +H + ++ V L+D+Y R A VF +
Sbjct: 100 YTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAK 159
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFTGALTACSHAGLIED 281
M R +V+WN+++ G+A +G A+ + MQ +G + + + L + G +
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQ 219
Query: 282 G 282
G
Sbjct: 220 G 220
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 133/217 (61%), Gaps = 6/217 (2%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYFEEALE 148
P +++ ++ +A G + A +FD R C+ W++++ + K EAL
Sbjct: 197 MPERDLVSWNTMIHGHASLGDVGTAKKLFD--RTCERDLISWSSMIAAYAKARQSNEALR 254
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F MQ++ V PD +T++SVL+ C +V LG+G +H + + + ++++ +L+D+Y+
Sbjct: 255 LFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYA 314
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G I+ + +VF M+ R + +W+++I+G A +GF AL++F+ M K ++V+F G
Sbjct: 315 KCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIG 374
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH GL+++G YF M K+Y VSP+IEH+GC+
Sbjct: 375 VLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCV 411
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 40/231 (17%)
Query: 96 NNVMVSTALLDMYAKFGRMDL--ATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFR 151
NN +++ L ++A DL A VFD + D W ++ ++ +E++ F
Sbjct: 34 NNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFF 93
Query: 152 VMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M+ P D ++ V+ C ++ G G +H V K ++ V L+++Y++F
Sbjct: 94 QMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKF 153
Query: 211 GCIEFARQV-------------------------------FQRMHKRTLVSWNSIIVGFA 239
G IE AR + F RM +R LVSWN++I G A
Sbjct: 154 GDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHA 213
Query: 240 VNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
G VG A + F+ + D +S++ + A + A + L+ F M+
Sbjct: 214 SLGDVGTAKKLFD----RTCERDLISWSSMIAAYAKARQSNEALRLFHEMQ 260
>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 151/281 (53%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN------- 96
T V W I + +GC EA F +M+ G +T + LL+ CA S+
Sbjct: 275 TVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVH 334
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+V++ TALL+MY+K G++ + +F M W ++ ++ ++ +
Sbjct: 335 GYVTRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYN 394
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA+ F + + PDY T+ +V+ + L MH Y+ + D+ +N V N +M
Sbjct: 395 EAITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVM 454
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+Y+R G + +R++F +M + ++SWN+II+G+A++G ALE F+ M+ + +E
Sbjct: 455 HMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNES 514
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F LTACS +G+ ++G F++M++ Y + PQIEH+GC+
Sbjct: 515 TFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCM 555
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 108/235 (45%), Gaps = 22/235 (9%)
Query: 63 EAALEFTR-MRLYGTNPSHITFVTLLSGCADFPS------------------NNVMVSTA 103
EAAL R M G P TF ++ CA + + V +
Sbjct: 89 EAALAAYRAMLAAGARPDRFTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNS 148
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQIS-GVEP 160
LL YAK G + A VFD M R W ++++G+V AL+ FR M V+
Sbjct: 149 LLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQH 208
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D + II+ L C L G +H YV + + +V+V +L+D+Y + G I A +F
Sbjct: 209 DGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMF 268
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
M RT+V+WN +I G+A+NG EA + F M+ + + V+ L AC+
Sbjct: 269 ATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQ 323
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 13/195 (6%)
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+L+ +A GRM A ++ GF E AL +R M +G PD
Sbjct: 48 SLVLSHAAAGRMHDALAAVRSSPDAFLHNVVIRGFADAGLPEAALAAYRAMLAAGARPDR 107
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
T V+ CA + L G H + V N+L+ Y++ G + A +VF
Sbjct: 108 FTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAERVFD 167
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEVSFTGALTACS------ 274
M R +V+WNS++ G+ NG AL+ F M +G+ + D V AL AC
Sbjct: 168 GMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQHDGVGIIAALAACCLDSALM 227
Query: 275 -----HAGLIEDGLQ 284
HA +I GL+
Sbjct: 228 QGREVHAYVIRHGLE 242
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 146/281 (51%), Gaps = 20/281 (7%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD-------- 92
T V W ++++ R G + A F M T +++ T+L G A
Sbjct: 266 TTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKDT----VSWNTMLDGYAKAGEAEEAF 321
Query: 93 -----FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
P NV+ + ++ Y K G M++A V+FD M + WT +++ ++ E
Sbjct: 322 ELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGE 381
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A F M+ + +E D + ++S+L CA L +G +HR+V ++ + VCN LMD
Sbjct: 382 AGRLFTEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMD 441
Query: 206 VYSRFGCIEFARQVFQ-RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
++ + GC+ A +F + ++ VSWN II GFA++G +AL F M++ F D V
Sbjct: 442 MFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAV 501
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ L+AC+H GL+E+G ++F M+ Y + P+IEH+GC+
Sbjct: 502 TLINVLSACTHMGLVEEGRRFFANMETDYGIKPEIEHYGCM 542
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 17/201 (8%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+ V AL+D Y+K + A VFD M D W + V++ + A F M
Sbjct: 237 EDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEM 296
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
E D ++ ++L+ A + + +P + NV +T++ Y + G +
Sbjct: 297 P----EKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGR----NVVSWSTVVSAYCKKGDM 348
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E AR +F +M + LV+W ++ A G VGEA F M++ + D V+ L AC
Sbjct: 349 EMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAAC 408
Query: 274 SHAGLIEDGLQYFDIMKKIYR 294
+ +G + G K+I+R
Sbjct: 409 AESGCLALG-------KRIHR 422
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
H +V K ++ V N L+D YS+ + A++VF M R +VSWN+ + G V
Sbjct: 227 HTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEV 286
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
A F+ M + D VS+ L + AG E+ + F M
Sbjct: 287 DAARSMFDEMP----EKDTVSWNTMLDGYAKAGEAEEAFELFQRM 327
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 147/281 (52%), Gaps = 20/281 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T V WTS I+ H R G EA F M+ G P +++ CA S
Sbjct: 324 TIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVH 383
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+N+ VS AL++MYAK G M+ A ++F + + W ++ G+ +
Sbjct: 384 NHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPN 443
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL+ F MQ ++PD +T+ VL CA + L G +H ++ ++ + ++ V L+
Sbjct: 444 EALQLFLDMQ-KQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALV 502
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y + G + A+Q+F + K+ ++ W +I G+ ++GF EA+ F M+ + +E
Sbjct: 503 DMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEES 562
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SFT L AC+H+GL+++G + FD MK + P++EH+ C+
Sbjct: 563 SFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACM 603
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 127/269 (47%), Gaps = 21/269 (7%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA----------- 91
D W +S + + G E+ F +M+ G TF +L G A
Sbjct: 121 DKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRV 180
Query: 92 -------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
F S N +V++ L+ Y K G ++ A ++FD + D W ++++G +
Sbjct: 181 HGYVLKLGFGSYNAVVNS-LIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGF 239
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
LE+F M GV+ D T+++VL CANV L +G +H Y K F V NT
Sbjct: 240 SRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNT 299
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+YS+ G + A +VF +M + T+VSW SII G EA+ F+ MQ + D
Sbjct: 300 LLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPD 359
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+ T + AC+ + ++ G + + +KK
Sbjct: 360 IYAVTSVVHACACSNSLDKGREVHNHIKK 388
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%)
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
E + T SVL +CA +++L G +H + + + L+ +Y G + R+
Sbjct: 54 ELELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRR 113
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+F + + WN ++ +A G E++ F MQ+ + D +FT L
Sbjct: 114 IFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKG 167
>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 140/252 (55%), Gaps = 18/252 (7%)
Query: 71 MRLYGTNPSHITFVTLLS---GCADFPSN----------NVMVSTALLDMYAKFGRMDLA 117
M G P+ T+ T+L+ G + F + + V TALLD Y K G +D A
Sbjct: 1 MSREGIKPNDFTYSTILTAQPGVSPFEMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEA 60
Query: 118 TVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
+ VF + D W+A++ G+ + E A+ F M ++P+ T ++N CA
Sbjct: 61 SKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACA-A 119
Query: 176 RTLGI--GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
T G+ G +H + K F + + V + L+ +YS+ G IE A +VF+R +R LVSWNS
Sbjct: 120 PTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNS 179
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
II G+A +G+ +ALE F MQ+ + D V+F G ++AC+H GL +G +YFDIM K +
Sbjct: 180 IISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDH 239
Query: 294 RVSPQIEHHGCI 305
+ P++EH+ C+
Sbjct: 240 HIEPRMEHYSCM 251
>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 133/263 (50%), Gaps = 24/263 (9%)
Query: 65 ALEFTRMRLYGTNPSHITFVTLLSGC-------------ADFPSNN----VMVSTALLDM 107
AL R RL P T+ LL C A+ N V V +L+
Sbjct: 107 ALALHRRRL--APPDTHTYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHH 164
Query: 108 YAKFGRMDLATVVFD----VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
Y G + A VFD + R W +++NGF E L FR + + PD
Sbjct: 165 YGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGF 224
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
TI+SVL CA + L +G +H + K N V N L+D+Y++ G +E A +VF+ M
Sbjct: 225 TIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEM 284
Query: 224 H-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
RT+VSW S+IVG A NGF +ALE F LM++ +++ G L ACSH GL++DG
Sbjct: 285 GVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDG 344
Query: 283 LQYFDIMKKIYRVSPQIEHHGCI 305
+YF+ M+ Y ++P IEH GC+
Sbjct: 345 FRYFNEMQDKYGIAPGIEHLGCM 367
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 22/186 (11%)
Query: 78 PSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVV 120
P T V++L+ CA+ + N V AL+D+YAK G ++ A V
Sbjct: 221 PDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKV 280
Query: 121 FD---VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
F+ V R WT+L+ G + ++ALE F +M+ + P +T++ VL C++
Sbjct: 281 FEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGL 340
Query: 178 LGIGL-WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
+ G + + K + ++D+ R G +E A M + V W +++
Sbjct: 341 VDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLL 400
Query: 236 VGFAVN 241
A++
Sbjct: 401 GACAMH 406
>gi|357143150|ref|XP_003572820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Brachypodium distachyon]
Length = 412
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 128/220 (58%), Gaps = 9/220 (4%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
FPS + + L+ MYA+F +D A +VF M+ D W +++ K DY EALE F
Sbjct: 45 FPS--ISIENCLMGMYARFEEVDSAHLVFKGMQFKDIVSWNTMISCLAKSDYVNEALELF 102
Query: 151 RVMQISGVE----PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ G PD++T++SV+ C++ L G +H Y+ K F +V +CN L+ +
Sbjct: 103 STLHGGGGGGGLVPDFVTVLSVVQACSSAGLLLQGQMLHGYITKYGFVQDVSICNVLISM 162
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVS 265
Y++ G I+ A Q+F++M+ + LVSWNS+I + V+G AL YF L+ G + ++
Sbjct: 163 YAKLGRIDSAEQIFKQMNAKDLVSWNSMINSYGVHGDGRSALRYFYQLIDAGTHTPNAIT 222
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F ++ACSH+GLI +G F+ M+K + + P ++H+ C+
Sbjct: 223 FLSVISACSHSGLISEGYMCFERMRKDHGIEPSMDHYSCV 262
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW 231
C +L G +H ++ K ++ + N LM +Y+RF ++ A VF+ M + +VSW
Sbjct: 23 CTVSGSLKNGREVHAHLIKTSAFPSISIENCLMGMYARFEEVDSAHLVFKGMQFKDIVSW 82
Query: 232 NSIIVGFAVNGFVGEALEYFNLMQ----KGVFKTDEVSFTGALTACSHAGLIEDG 282
N++I A + +V EALE F+ + G D V+ + ACS AGL+ G
Sbjct: 83 NTMISCLAKSDYVNEALELFSTLHGGGGGGGLVPDFVTVLSVVQACSSAGLLLQG 137
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 125/216 (57%), Gaps = 3/216 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P +VM +L YA G ++L VF+ M R W L+ G+V+ F+EALE F
Sbjct: 82 MPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECF 141
Query: 151 RVMQISGVE-PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
+ M + GV P+ T+++VL+ C+ + L IG W+H Y +K N+ V N L+D+Y++
Sbjct: 142 KRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAK 201
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G IE A VF + + +++WN+II A++ +AL F M++ + D V+F G
Sbjct: 202 CGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGI 261
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+AC+H GL+ +G +F M Y + PQIEH+GC+
Sbjct: 262 LSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCM 297
Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 32/119 (26%)
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV----------- 244
+V + N ++ Y G + AR++F RM ++SWN+++ G+A NG V
Sbjct: 55 DVVLWNVIVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMP 114
Query: 245 --------------------GEALEYFN-LMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
EALE F ++ GV ++ + L+ACS G +E G
Sbjct: 115 ARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIG 173
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 126/212 (59%), Gaps = 3/212 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATV-VFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+V+ ALL YA+ G M+LA+ VF ++ W A++ G+ F E L F M
Sbjct: 173 DVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDM 232
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q +GV+PD T++SVL+ CA+V L G W+H Y+ K + V L+D+YS+ G I
Sbjct: 233 QHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSI 292
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A +VF ++ + +WNSII G + +G AL+ F+ M FK +EV+F L+AC
Sbjct: 293 EKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSAC 352
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
S AGL+++G + F++M ++ + P IEH+GC+
Sbjct: 353 SRAGLLDEGREMFNLMVHVHGIQPTIEHYGCM 384
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 32/186 (17%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
W ++ + E AL F M + V PD T L C + + G +H +V
Sbjct: 75 MWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHV 134
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV---- 244
K D++ + NTL+ +Y+ GCIE AR + RM +R +VSWN+++ +A G +
Sbjct: 135 LKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELAS 194
Query: 245 ----------------------------GEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
E L F MQ K D + L+AC+H
Sbjct: 195 RRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHV 254
Query: 277 GLIEDG 282
G + G
Sbjct: 255 GALSQG 260
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
I +A +F R+ WN+II +A + AL F+ M D+ +FT AL +
Sbjct: 58 IPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKS 117
Query: 273 CSHAGLIEDGLQ 284
C +E+G Q
Sbjct: 118 CGSFSGVEEGRQ 129
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 138/284 (48%), Gaps = 19/284 (6%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------ 94
+ V WT I G EA F + G P V +L CA
Sbjct: 166 VVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGR 225
Query: 95 -----------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
S NV V+T+L+DMY K G M+ A VFD M D W+A++ G+
Sbjct: 226 WIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNG 285
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
EA+E F M+ V PD ++ L+ CA++ L +G W + ++F N +
Sbjct: 286 LPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGT 345
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
+L+D Y++ G +E A V++ M ++ V +N++I G A+ G VG A F M K
Sbjct: 346 SLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPP 405
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+E +F G L C+HAGL++DG YF+ M + V+P IEH+GC+
Sbjct: 406 NEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCM 449
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 107/188 (56%), Gaps = 2/188 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V V T ++ Y+K G + A VFD V++ WT ++ G ++ F EA++ FR +
Sbjct: 138 DVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLL 197
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
SG+ PD I+ VL CA + L G W+ R + + NV V +L+D+Y++ G +E
Sbjct: 198 ESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSME 257
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
AR VF M ++ +V W+++I G+A NG EA+E F M+K + D + GAL++C+
Sbjct: 258 EARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCA 317
Query: 275 HAGLIEDG 282
G +E G
Sbjct: 318 SLGALELG 325
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
+ ++ G V +D F A+ + M + + PD T VL CA + +G+ +H V
Sbjct: 71 LYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLV 130
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K F +V V ++ YS+ G + A +VF M + +VSW +I G G EA+
Sbjct: 131 FKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAV 190
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ F + + + D L AC+ G +E G
Sbjct: 191 DLFRGLLESGLRPDGFVIVRVLRACARLGDLESG 224
>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
Length = 1062
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 149/290 (51%), Gaps = 23/290 (7%)
Query: 37 NSKSTIDTTVQWTSSISRHCRSGC-ILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP- 94
NS S D V W S + S I E+ F+ M G P+ +TFV L+
Sbjct: 543 NSMSAHDV-VSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSV 601
Query: 95 ----------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---CDFWTALLN 135
+ + V AL+ YAK G +D +F M G W ++++
Sbjct: 602 LELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMIS 661
Query: 136 GFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195
G++ + +EA++ +M S D+ T VLN CA+V L G+ MH + + +
Sbjct: 662 GYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLES 721
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
+V V + L+D+YS+ G I++A +VF M ++ SWNS+I G+A +G +ALE F MQ
Sbjct: 722 DVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQ 781
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D V+F L+ACSHAGL+E GL YF++M+ Y + P+IEH+ C+
Sbjct: 782 ESGESPDHVTFVSVLSACSHAGLVERGLDYFELMED-YGILPRIEHYSCV 830
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 117/260 (45%), Gaps = 21/260 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
+ W + I+ ++G A + + MR PS+ ++ LS CA
Sbjct: 450 ISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCD 509
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY-FEE 145
+ VS AL+ MY + GRM +F+ M D W +++ E
Sbjct: 510 AVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITE 569
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+++ F M SG+ P+ +T ++ L + L +G +H + K ++ V N LM
Sbjct: 570 SVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMS 629
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
Y++ G ++ ++F RM +R +SWNS+I G+ NG + EA++ LM D
Sbjct: 630 CYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHC 689
Query: 265 SFTGALTACSHAGLIEDGLQ 284
+F+ L AC+ +E G++
Sbjct: 690 TFSIVLNACASVAALERGME 709
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 25/235 (10%)
Query: 82 TFVTLLSGCADFPS----------------------NNVMVSTALLDMYAKFGRMDLATV 119
T+V LLS A+F + + VS L++MYAK G +D A
Sbjct: 380 TYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACR 439
Query: 120 VFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
VF +M D W ++ + Y E A+ + +M+ + + P IS L+ CA +
Sbjct: 440 VFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGL 499
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII-V 236
L G +H K + V N L+ +Y G + ++F M +VSWNSI+ V
Sbjct: 500 LAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGV 559
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+ + E+++ F+ M K ++V+F L A + ++E G Q +M K
Sbjct: 560 MASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLK 614
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 12/190 (6%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
++++ ++ L++ YAK R+D A VFD M G + WT L++G V E+A FR
Sbjct: 97 THDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRA 156
Query: 153 M--QISGVEPDYLTIISVLNVC--ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
M + G P T SVL C + LG + +H V K +F N VCN L+ +Y
Sbjct: 157 MLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYG 216
Query: 209 --RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ---KGV-FKTD 262
G A++VF R L++WN+++ +A G F MQ G+ +
Sbjct: 217 SCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPT 276
Query: 263 EVSFTGALTA 272
E +F +TA
Sbjct: 277 EHTFGSLITA 286
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 15/211 (7%)
Query: 83 FVTLL-SGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVK 139
FV +L SGC S+++ V +AL+ +A+ G +D A ++ ++ + T L+ G VK
Sbjct: 301 FVRVLKSGC----SSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVK 356
Query: 140 RDYFEEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN-- 196
+ + E A E F + S V D T + +L+ A T GL R V +
Sbjct: 357 QQHGEAAAEIFMGARDSAAVNVD--TYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHI 414
Query: 197 ---VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
+ V N L+++Y++ G I+ A +VFQ M R +SWN+II NG+ A+ + L
Sbjct: 415 YRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCL 474
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
M++ + L++C+ GL+ G Q
Sbjct: 475 MRQNSIGPSNFAAISGLSSCAGLGLLAAGQQ 505
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H V K+ ++ + N L++ Y++ ++ AR+VF M R VSW +I G ++G
Sbjct: 87 LHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGL 146
Query: 244 VGEALEYFNLMQKGVFKTDEVSFT--GALTACSHAG 277
+A F M + SFT L AC +G
Sbjct: 147 PEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSG 182
>gi|413934541|gb|AFW69092.1| hypothetical protein ZEAMMB73_188982 [Zea mays]
Length = 630
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 144/278 (51%), Gaps = 20/278 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFPS----------- 95
+TS IS R+ EA F M R G P TF +++S +
Sbjct: 213 YTSLISAFVRNDWFDEALRWFQAMLRTDGVWPDGCTFGSMMSALGNMKRARQGREAHAQV 272
Query: 96 ------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEAL 147
NV+V ++ LDMYAK G M A VFD M+ + W ALL G+ + E+ L
Sbjct: 273 VTRGLCGNVIVESSTLDMYAKCGMMVDARKVFDRMKAPNAVSWCALLGGYCQTGKHEKVL 332
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
FR M + + D+ ++ ++L CA + + +G +H + +V V + L+D+Y
Sbjct: 333 SLFRQMHMQEQDDDWYSLGTLLRSCAGLSAVKLGKEIHCRSMRMRGCGDVIVESALVDLY 392
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
++ G +++A +VF+ R +++WN++I G A NG A+ FN M +G K D +SF
Sbjct: 393 AKCGAVDYAYRVFKMSSVRNMITWNAMICGCAQNGHGERAISLFNEMVRGGVKPDYISFI 452
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSH G++E+G YF+ M K Y + P IEH+ CI
Sbjct: 453 GVLFACSHTGMVEEGRNYFNSMSKDYGIPPGIEHYNCI 490
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 101/202 (50%), Gaps = 10/202 (4%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
++ +V +AL+DMY G A F+ MR D +T+L++ FV+ D+F+EAL +F+
Sbjct: 176 GDDGVVLSALVDMYGHSGAPGDARKAFEEMRAPDGICYTSLISAFVRNDWFDEALRWFQA 235
Query: 153 M-QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M + GV PD T S+++ N++ G H V + NV V ++ +D+Y++ G
Sbjct: 236 MLRTDGVWPDGCTFGSMMSALGNMKRARQGREAHAQVVTRGLCGNVIVESSTLDMYAKCG 295
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
+ AR+VF RM VSW +++ G+ G + L F M D S L
Sbjct: 296 MMVDARKVFDRMKAPNAVSWCALLGGYCQTGKHEKVLSLFRQMHMQEQDDDWYSLGTLLR 355
Query: 272 ACSHAGLIEDGLQYFDIMKKIY 293
+C+ GL + K+I+
Sbjct: 356 SCA-------GLSAVKLGKEIH 370
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 20/213 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V W + + +C++G + F +M + + + TLL CA +
Sbjct: 312 AVSWCALLGGYCQTGKHEKVLSLFRQMHMQEQDDDWYSLGTLLRSCAGLSAVKLGKEIHC 371
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDV--MRGCDFWTALLNGFVKRDYFEE 145
+V+V +AL+D+YAK G +D A VF + +R W A++ G + + E
Sbjct: 372 RSMRMRGCGDVIVESALVDLYAKCGAVDYAYRVFKMSSVRNMITWNAMICGCAQNGHGER 431
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLM 204
A+ F M GV+PDY++ I VL C++ + G + + + N ++
Sbjct: 432 AISLFNEMVRGGVKPDYISFIGVLFACSHTGMVEEGRNYFNSMSKDYGIPPGIEHYNCIV 491
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
D+ SR +E A + + R S + I+G
Sbjct: 492 DLLSRVELLEEAEDLVNKSQFRDDSSLWAAILG 524
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 9/150 (6%)
Query: 131 TALLNGFVKRDYFEEALEYFRVMQISG------VEPDYLTIISVLNVCANVRTLGIGLWM 184
+++L F++ AL R M G V P + + CA + L G +
Sbjct: 107 SSVLAAFLRAGLPRRALLQLRTMASGGYGADDDVAPSAHALSASAKACAVLHDLRAGACV 166
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
H + + D+ V + L+D+Y G AR+ F+ M + + S+I F N +
Sbjct: 167 HGTTVVRGYGDDGVVLSALVDMYGHSGAPGDARKAFEEMRAPDGICYTSLISAFVRNDWF 226
Query: 245 GEALEYFNLMQK--GVFKTDEVSFTGALTA 272
EAL +F M + GV+ D +F ++A
Sbjct: 227 DEALRWFQAMLRTDGVW-PDGCTFGSMMSA 255
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 126/226 (55%), Gaps = 13/226 (5%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ NV+ TA++ Y + G++ A ++F+ M R W AL+ G+ + F EAL
Sbjct: 216 EMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSL 275
Query: 150 FRVMQI-------SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
FR M G P+ +T + L+ C + L +G W+H YV + + V N
Sbjct: 276 FRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNA 335
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ---KGVF 259
L+D+Y + GC++ AR+VF R +R+L SWNS+I A++G A+ F M GV
Sbjct: 336 LVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGV- 394
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
K DEV+F G L AC+H GL+E G YF++M + Y + PQIEH+GC+
Sbjct: 395 KPDEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCL 440
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 32/226 (14%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLY-------GTNPSHITFVTLLSGCA--------- 91
W + I+ + ++G +EA F RM G P+ +T V LS C
Sbjct: 256 WNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGK 315
Query: 92 --------DFPSNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRD 141
+ + VS AL+DMY K G + A VFD + R W +++N
Sbjct: 316 WIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHG 375
Query: 142 YFEEALEYFRVMQI--SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF--KDNV 197
+ A+ F M SGV+PD +T I +LN C + + G W++ + Q++ + +
Sbjct: 376 QSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGGLVEKG-WLYFELMTQNYGIEPQI 434
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
L+D+ R G E A +V + M + V W S++ G ++G
Sbjct: 435 EHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHG 480
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 124/213 (58%), Gaps = 2/213 (0%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
+ +V+ A++D Y K M A +VFD M R W ++NG+ EAL F
Sbjct: 229 ARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQ 288
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M+ GV+P T++S+L+ CA++ L GL +H Y+ + N V L+D+Y++ G
Sbjct: 289 MRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGK 348
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
I A QVF M + +++WN+II G A++G V EA + F M++ + ++++F L+A
Sbjct: 349 ISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSA 408
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
CSHAG++++G + D M Y + P++EH+GC+
Sbjct: 409 CSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCV 441
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 31/171 (18%)
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL + M SG++PD++T V+ C GL +H +V K F+ + + ++L+
Sbjct: 149 EALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLI 208
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA------------------------- 239
+Y+ + A+Q+F R +VSWN++I G+
Sbjct: 209 HLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNT 268
Query: 240 -VNGFV-----GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+NG+ EAL F+ M+ K E + L+AC+H G ++ GL
Sbjct: 269 MINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLH 319
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 137/253 (54%), Gaps = 17/253 (6%)
Query: 70 RMRLYGTNPSHITFVTLLSGCADFPS--------------NNVMVSTALLDMYAKFGRMD 115
+M + G +P H TF +L CA + ++V V L+ Y G +D
Sbjct: 77 KMTMAGVSPDHFTFPFVLKACARLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLD 136
Query: 116 LATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVC 172
A F+ M D W++++ F K + EAL F+ MQ+ G V+PD + ++SV++
Sbjct: 137 FALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAI 196
Query: 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
+ + L +G W+ ++ + + V + L+D++SR GCIE + +VF M +R +++W
Sbjct: 197 SILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWT 256
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
++I G AV+G EAL F M+ F+ D V+FTG L ACSH GL+ +G F+ ++
Sbjct: 257 ALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNE 316
Query: 293 YRVSPQIEHHGCI 305
Y + P EH+GC+
Sbjct: 317 YGMEPLPEHYGCM 329
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 127/213 (59%), Gaps = 4/213 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM- 153
+ V ALL YAK G +D A +F+ M R WTA+++G+ + EEA+E F M
Sbjct: 152 DTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMW 211
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ +GV+P+ LT+ SVL CA V + +G + Y + NV V N L+++YS+ G I
Sbjct: 212 ERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSI 271
Query: 214 EFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
A QVFQ + ++ L SWNS+I+ FAV+G EAL F ++ K D ++F G + A
Sbjct: 272 RQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILA 331
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
C+H GL+ +G +FD M+ + + P+IEH+GC+
Sbjct: 332 CTHGGLVNEGKLFFDSMEAEFSLKPRIEHYGCM 364
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 110/275 (40%), Gaps = 57/275 (20%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFPS-------- 95
V WT+ +S + ++G EA F M G P+ +T ++L CA +
Sbjct: 184 VVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRKVE 243
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFD-VMRGCDF--WTALLNGFVKRDYF 143
NV V+ ALL+MY+K G + A VF + R D W +++ F +
Sbjct: 244 EYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLW 303
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EAL F ++++GV+PD +T + V+ C + + G + F D++ +L
Sbjct: 304 REALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEG---------KLFFDSMEAEFSL 354
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+GC+ + G G +E ++L+ + D
Sbjct: 355 KPRIEHYGCM------------------------VDLLGRAGLLIESYSLIASMPVEPDA 390
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ 298
V + L ACS G +E D K+ + PQ
Sbjct: 391 VIWGALLGACSFHGNVELAELAMD---KLIHLEPQ 422
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 147/281 (52%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WT+ ISR+ ++G EA F M P+ TF T+L+ C
Sbjct: 119 VSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGL 178
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+++ V ++LLDMYAK G++ A +F+ + D TA++ G+ + EEA
Sbjct: 179 IVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEA 238
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F + G+ P+Y+T S+L + + L G H +V +++ + N+L+D+
Sbjct: 239 LEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDM 298
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVS 265
YS+ G + +AR++F M +RT +SWN+++VG++ +G E LE F LM+ + K D V+
Sbjct: 299 YSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVT 358
Query: 266 FTGALTACSHAGLIEDGLQYFDIM-KKIYRVSPQIEHHGCI 305
L+ CSH + + GL FD M Y P EH+GCI
Sbjct: 359 LLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCI 399
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 26/273 (9%)
Query: 33 IQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD 92
I + S S + +Q IS+ C +G + EA LE M + G + LL+ C D
Sbjct: 8 IHRSFSSSPTNYVLQTILPISQLCSNGRLQEALLE---MAMLGPEMGFHGYDALLNACLD 64
Query: 93 -------------------FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWT 131
P+ + T LL Y K ++ A V D M + WT
Sbjct: 65 KRALRDGQRVHAHMIKTRYLPA--TYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWT 122
Query: 132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
A+++ + + + EAL F M S +P+ T +VL C LG+G +H + K
Sbjct: 123 AMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKW 182
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
++ ++ V ++L+D+Y++ G I+ AR++F+ + +R +VS +II G+A G EALE F
Sbjct: 183 NYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMF 242
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+ + + V++ LTA S L++ G Q
Sbjct: 243 HRLHSEGMSPNYVTYASLLTALSGLALLDHGKQ 275
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M + G E + ++LN C + R L G +H ++ K + + L+ Y + C
Sbjct: 43 MAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC 102
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+E AR+V M ++ +VSW ++I ++ G EAL F M + K +E +F LT+
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTS 162
Query: 273 CSHAGLIEDGLQYFDIMKK 291
C A + G Q ++ K
Sbjct: 163 CIRASGLGLGKQIHGLIVK 181
>gi|326523581|dbj|BAJ92961.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 384
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 136/280 (48%), Gaps = 25/280 (8%)
Query: 47 QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF------------- 93
+WT IS R G EA EF+RM P+ +T ++L CA
Sbjct: 1 RWTKRISALARGGRAAEAVAEFSRMD---AAPNALTLASVLPACARLRSLGLGRAIHGFW 57
Query: 94 ------PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
P N +V A+LD+YAK G + A +FD M D WTA+ G + ++
Sbjct: 58 LRRGGGPGANPIVDNAVLDVYAKCGALRSARRLFDGMPERDVFAWTAMAWGLARGGSPQD 117
Query: 146 ALEYFRVM-QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
A+ FR M G P+ T++SVL+ A+ L G +H Y K+ V N L+
Sbjct: 118 AVAVFRAMLSDGGARPNEATLVSVLHAVASTGALACGKLLHSYALKRGLGGEQVVGNALV 177
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D Y++ G A QVF + + LVSW +++ AV+G EAL+ F++M + + D+
Sbjct: 178 DAYAKCGEARLAFQVFDLLPDKDLVSWATVMRAMAVHGRCREALQLFSMMLRQGVRPDDA 237
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
F L AC HAG ++ L D M +IY ++PQ EH+ C
Sbjct: 238 VFLSLLYACCHAGQVDQTLHLLDAMGRIYGIAPQKEHYTC 277
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 139/278 (50%), Gaps = 50/278 (17%)
Query: 78 PSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVV 120
P TF LL C++ PS + V VS L+ MYA G ++ A +V
Sbjct: 134 PDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLV 193
Query: 121 FDVMRGCD---------------------------------FWTALLNGFVKRDYFEEAL 147
FD CD W+ ++NG+V+ F+E L
Sbjct: 194 FDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGL 253
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
F+ M +EP+ +++ L+ CA++ + G W+ RY+ +++ + VR+ L+D+Y
Sbjct: 254 GLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMY 313
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
S+ G +E A +VF +M ++ +++W+++I G A+NG +AL F+ M+ K +EV+F
Sbjct: 314 SKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFI 373
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSH+ L+++G +F M IY + P HH C+
Sbjct: 374 GILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCM 411
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 31/165 (18%)
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
Y + + S V PD T +L C+ + +L +G +H +V K + V V N L+ +Y+
Sbjct: 123 YSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYA 182
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGF--------------------------AVNG 242
G IE A VF R + SWN +I G+ +NG
Sbjct: 183 SCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMING 242
Query: 243 FVGEA-----LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+V E+ L F M + +E AL+AC+H G +E G
Sbjct: 243 YVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQG 287
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 147/280 (52%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ W + I+ + R EA + +M+ G P +TF+ LLS CA+ +
Sbjct: 397 ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+N ++ AL++MY + G + A VF+ + D W +++ G + +E A
Sbjct: 457 ILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETA 516
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ F+ MQ +EPD +T SVL+ C N L +G +H + + + +V + N L+++
Sbjct: 517 YKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINM 576
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK-TDEVS 265
Y R G ++ AR VF + R ++SW ++I G A G +A+E F MQ F+ D +
Sbjct: 577 YIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGST 636
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
FT L+AC+HAGL+ +G Q F M+ Y V P IEH+GC+
Sbjct: 637 FTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCL 676
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 128/258 (49%), Gaps = 19/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
V + + I+ + G +EA ++ RMR G + T++++L+ C+
Sbjct: 296 VVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSH 355
Query: 92 ---DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
D S++V + AL+ MYA+ G + A +F M D W A++ G+ +R+ EA
Sbjct: 356 ISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEA 415
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ ++ MQ GV+P +T + +L+ CAN G +H + + K N + N LM++
Sbjct: 416 MRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNM 475
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y R G + A+ VF+ R ++SWNS+I G A +G A + F MQ + D ++F
Sbjct: 476 YRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITF 535
Query: 267 TGALTACSHAGLIEDGLQ 284
L+ C + +E G Q
Sbjct: 536 ASVLSGCKNPEALELGKQ 553
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 118/256 (46%), Gaps = 19/256 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC---ADFPSNNVM--- 99
+ W S IS + + G +A F M+ G P+ IT++++L+ C A+ + +
Sbjct: 94 ISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQ 153
Query: 100 -----------VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
V +LL MY K G + A VF + D + +L + ++ Y +E
Sbjct: 154 IIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKEC 213
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F M G+ PD +T I++L+ L G +H+ ++ ++RV L+ +
Sbjct: 214 LGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTM 273
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
R G ++ A+Q F+ + R +V +N++I A +G EA E + M+ + ++
Sbjct: 274 CVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTY 333
Query: 267 TGALTACSHAGLIEDG 282
L ACS + +E G
Sbjct: 334 LSILNACSTSKALEAG 349
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 107/202 (52%), Gaps = 9/202 (4%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ +S L++MY K + A VF M R W +L++ + ++ + ++A + F MQ
Sbjct: 61 DIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ 120
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+G P+ +T IS+L C + L G +H + K ++ + RV N+L+ +Y + G +
Sbjct: 121 NAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLP 180
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
ARQVF + R +VS+N+++ +A +V E L F M D+V++ L A +
Sbjct: 181 RARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFT 240
Query: 275 HAGLIEDGLQYFDIMKKIYRVS 296
++++G K+I++++
Sbjct: 241 TPSMLDEG-------KRIHKLT 255
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 1/149 (0%)
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q E D T +++L C R L +H + + ++ + N L+++Y + +
Sbjct: 19 QPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSV 78
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A QVF+ M +R ++SWNS+I +A GF +A + F MQ F +++++ LTAC
Sbjct: 79 LDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTAC 138
Query: 274 SHAGLIEDGLQ-YFDIMKKIYRVSPQIEH 301
+E+G + + I+K Y+ P++++
Sbjct: 139 YSPAELENGKKIHSQIIKAGYQRDPRVQN 167
>gi|217074958|gb|ACJ85839.1| unknown [Medicago truncatula]
gi|388521431|gb|AFK48777.1| unknown [Medicago truncatula]
Length = 515
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 150/282 (53%), Gaps = 25/282 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WTS IS + G EA F+ + + P+ +T V+ +S C+ +
Sbjct: 125 VSWTSLISGLSKCGFETEAIEAFSSINV---KPNALTLVSAISACSSIGAIKFGKAIHAY 181
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N++ A LD+YAK G A VF M D WT LL + + E
Sbjct: 182 GLKSLMIDGNIVFYNAALDLYAKCGFFSNARNVFVKMSKRDVISWTTLLMAYARGGQCGE 241
Query: 146 ALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTL 203
A+E F+ M +SG EP+ T+++VL+ CA++ +L +G W+H Y+ K+ D + + N L
Sbjct: 242 AVEVFKQMIVSGEAEPNESTVVTVLSACASIGSLSLGCWVHDYIEKRIDLDVDGNIGNAL 301
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+++Y + G ++ +VF + + ++SW ++I G A+N + + ++ F+ M D+
Sbjct: 302 VNMYVKCGDMKMGLKVFNMVVHKDVISWGTVICGLAMNEYGKQVVQMFSHMLVHGVLPDD 361
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F G L+ACSH GL+ +G+ +F M+ Y + PQ+ H+GC+
Sbjct: 362 VTFIGLLSACSHVGLVSEGMMFFKAMRDSYGIVPQMSHYGCM 403
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
++ T L C + GL +H + K + + NTL+ Y + A +VF
Sbjct: 57 NHYTFTHALKACCSYHAHAKGLEIHARLIKSGHIFDGFIKNTLLYFYLSSNDVVSATRVF 116
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
+ + +VSW S+I G + GF EA+E F+ + K + ++ A++ACS G I+
Sbjct: 117 KSIPSPDVVSWTSLISGLSKCGFETEAIEAFSSIN---VKPNALTLVSAISACSSIGAIK 173
Query: 281 DG 282
G
Sbjct: 174 FG 175
>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 882
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 149/280 (53%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS---GCADFP------S 95
TV W S IS + +SG ++EA F M + HIT++ L+S AD S
Sbjct: 373 TVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHS 432
Query: 96 NNVM--------VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N + VS AL+DMYAK G + + +F M D W +++ V+ F
Sbjct: 433 NGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFAT 492
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
L+ M+ S V PD T + L +CA++ +G +H + + ++ +++ N L++
Sbjct: 493 GLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIE 552
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ GC+E + +VF+RM +R +V+W +I + + G +ALE F M+K D V
Sbjct: 553 MYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVV 612
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F + ACSH+GL+++GL F+ MK Y++ P IEH+ C+
Sbjct: 613 FIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACV 652
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 9/206 (4%)
Query: 80 HITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF---DVMRGCDFWTALLNG 136
H ++L +DF S L+D Y+ F + VF + W +++
Sbjct: 27 HALVISLGLDSSDF------FSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRA 80
Query: 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
F K F EALE++ ++ S V PD T SV+ CA + +G ++ + F+ +
Sbjct: 81 FSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESD 140
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
+ V N L+D+YSR G + ARQVF M R LVSWNS+I G++ +G+ EALE ++ ++
Sbjct: 141 LFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKN 200
Query: 257 GVFKTDEVSFTGALTACSHAGLIEDG 282
D + + L A + +++ G
Sbjct: 201 SWIVPDSFTVSSVLPAFGNLLVVKQG 226
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 123/270 (45%), Gaps = 24/270 (8%)
Query: 27 KRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL 86
+ P S+ S W S I ++G EA + ++R +P TF ++
Sbjct: 53 REPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSV 112
Query: 87 LSGCADFP-----------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF 129
+ CA +++ V AL+DMY++ G + A VFD M D
Sbjct: 113 IKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDL 172
Query: 130 --WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
W +L++G+ Y+EEALE + ++ S + PD T+ SVL N+ + G +H +
Sbjct: 173 VSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGF 232
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
K V V N L+ +Y +F AR+VF M R VS+N++I G+ V E+
Sbjct: 233 ALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEES 292
Query: 248 LEYF--NLMQKGVFKTDEVSFTGALTACSH 275
+ F NL Q FK D ++ + L AC H
Sbjct: 293 VRMFLENLDQ---FKPDLLTVSSVLRACGH 319
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L+ MY KF R A VFD M R + ++ G++K + EE++ F + + +PD
Sbjct: 248 LVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF-LENLDQFKPD 306
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
LT+ SVL C ++R L + +++ Y+ K F V N L+DVY++ G + AR VF
Sbjct: 307 LLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFN 366
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
M + VSWNSII G+ +G + EA++ F +M + D +++
Sbjct: 367 SMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITY 411
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 148/272 (54%), Gaps = 15/272 (5%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----- 96
+ T Q + ++ C G +++ E G + F+ GC N
Sbjct: 119 VRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTG-----LVFMYAELGCLSSCHNVFDGA 173
Query: 97 ---NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
+++ TA+L+ AK G +D A +FD M D W A++ G+ + EAL+ F
Sbjct: 174 VEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFH 233
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
+MQ+ GV+ + ++++ VL+ C +++ L G W+H YV + + V + L+D+Y++ G
Sbjct: 234 LMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCG 293
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
++ A QVF M +R + +W+S I G A+NGF E+L+ FN M++ + + ++F L
Sbjct: 294 NVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLK 353
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303
CS GL+E+G ++FD M+ +Y + PQ+EH+G
Sbjct: 354 GCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYG 385
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 31/158 (19%)
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC--- 212
+ + PD T ++ CA ++ GL +H V K F+ + V L+ +Y+ GC
Sbjct: 106 NNLSPDNYTFTFLVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSS 165
Query: 213 ----------------------------IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
I+FAR++F M +R V+WN++I G+A G
Sbjct: 166 CHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRS 225
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
EAL+ F+LMQ K +EVS L+AC+H +++ G
Sbjct: 226 REALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHG 263
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 142/281 (50%), Gaps = 50/281 (17%)
Query: 75 GTNPSHITFVTLLSGCADFP-----------------SNNVMVSTALLDMYAKFGRMDLA 117
G P ++TF L+ C +V V +L+ MYA FG + A
Sbjct: 114 GLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAA 173
Query: 118 TVVFDVMRGCDF---------------------------------WTALLNGFVKRDYFE 144
T++F M D W+ +++G+ + ++F+
Sbjct: 174 TLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFD 233
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+A+E F+V+Q GV + ++SV++ CA++ L +G H YV K N+ + L+
Sbjct: 234 KAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALV 293
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y+R G I+ A VF+ + +R +SW ++I G A++G+ +L+YF M + ++
Sbjct: 294 DMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDI 353
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+FT L+ACSH GL+E G Q F+ MK+ +RV P++EH+GC+
Sbjct: 354 TFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCM 394
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 33/211 (15%)
Query: 114 MDLATVVFDVMRGCDFW--TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV 171
+D A+ +F ++ + + A++ G ++A ++ Q G+ PD LT ++
Sbjct: 69 IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 128
Query: 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW 231
C + + +G H ++ K F+ +V V N+L+ +Y+ FG E A +FQRM+ +VSW
Sbjct: 129 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSW 188
Query: 232 NSIIVGF-------------------------------AVNGFVGEALEYFNLMQKGVFK 260
S+I GF A N +A+E F ++Q +
Sbjct: 189 TSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+E +++C+H G +E G + D + K
Sbjct: 249 ANETVMVSVISSCAHLGALELGERAHDYVVK 279
>gi|224123708|ref|XP_002319146.1| predicted protein [Populus trichocarpa]
gi|222857522|gb|EEE95069.1| predicted protein [Populus trichocarpa]
Length = 337
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 132/220 (60%), Gaps = 6/220 (2%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ P NV+ ++ K+G+++ A+ +FD M + WT +++G+++ + + E L
Sbjct: 17 EMPKRNVVTWNVMITGLVKWGKLEFASSLFDEMPEKNVVSWTGIIDGYIRNNKYSEGLSL 76
Query: 150 FRVMQI-SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVY 207
FR M + G++P +TI+++L +N+ L +H Y K+ F ++RV N+++D Y
Sbjct: 77 FRRMVVCEGIKPTEITILAILPAISNMGELKSCSLIHGYAEKRGFNAFDIRVANSIIDCY 136
Query: 208 SRFGCIEFARQVFQ--RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
S+ GCI A + F+ + ++ LVSW SII GFA++G EA+EYF M+K K + V+
Sbjct: 137 SKCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWKEAVEYFERMEKAGLKPNRVT 196
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L ACSH GL+++GL+ F M + V P I+H+GC+
Sbjct: 197 FLSVLNACSHGGLVDEGLRCFYKMVNEHGVLPDIKHYGCV 236
Score = 37.4 bits (85), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA 91
V WTS IS G EA F RM G P+ +TF+++L+ C+
Sbjct: 160 VSWTSIISGFAMHGMWKEAVEYFERMEKAGLKPNRVTFLSVLNACS 205
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 148/283 (52%), Gaps = 19/283 (6%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF---- 93
++S I WT+ +S + ++G + EA F M + + I++ +L+G +
Sbjct: 256 NESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPV----KNEISYNAMLAGYVQYKKMV 311
Query: 94 ---------PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
P N+ ++ Y + G + A +FD+M R C W A+++G+ + +
Sbjct: 312 IAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGH 371
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+EEAL F M+ G + T L+ CA++ L +G +H V K F+ V N
Sbjct: 372 YEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNA 431
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+ +Y + G + A VF+ + ++ +VSWN++I G+A +GF +AL F M+K K D
Sbjct: 432 LLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPD 491
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
E++ G L+ACSH+GLI+ G +YF M + Y V P +H+ C+
Sbjct: 492 EITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCM 534
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 121/281 (43%), Gaps = 35/281 (12%)
Query: 26 KKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNP--SHITF 83
K+R S ++ K V W +IS H R+G A +R++ + P S +++
Sbjct: 27 KRRSTNSYSPSSVKFKDPDIVTWNKAISSHMRNGHCDSA------LRVFNSMPRRSSVSY 80
Query: 84 VTLLSGC---ADF----------PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF- 129
++SG A F P ++ +L Y + R+ A +FD+M D
Sbjct: 81 NAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVV 140
Query: 130 -WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
W A+L+G+ + + +EA E F M + IS + A G R
Sbjct: 141 SWNAMLSGYAQNGFVDEAREVFNKMP-------HRNSISWNGLLAAYVHNGRLKEARRLF 193
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
Q + + N LM Y + + ARQ+F RM R ++SWN++I G+A G + +A
Sbjct: 194 ESQSNWELIS-WNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAK 252
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
FN D ++T ++ G++++ +YFD M
Sbjct: 253 RLFNESP----IRDVFTWTAMVSGYVQNGMVDEARKYFDEM 289
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 107/272 (39%), Gaps = 53/272 (19%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V W + +S + ++G + EA F +M P N + LL
Sbjct: 140 VSWNAMLSGYAQNGFVDEAREVFNKM----------------------PHRNSISWNGLL 177
Query: 106 DMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGV----- 158
Y GR+ A +F+ + W L+ G+VKR+ +A + F M + V
Sbjct: 178 AAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNT 237
Query: 159 -------------------EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
E + + + + G+ +Y + K+ +
Sbjct: 238 MISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISY 297
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
N ++ Y ++ + A ++F+ M R + SWN++I G+ NG + +A + F++M
Sbjct: 298 -NAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMP---- 352
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+ D VS+ ++ + G E+ L F MK+
Sbjct: 353 QRDCVSWAAIISGYAQNGHYEEALNMFVEMKR 384
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 127/213 (59%), Gaps = 4/213 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM- 153
+ V ALL YAK G +D A +F+ M R WTA+++G+ + EEA+E F M
Sbjct: 152 DTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMW 211
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ +GV+P+ LT+ SVL CA V + +G + Y + NV V N L+++YS+ G I
Sbjct: 212 ERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSI 271
Query: 214 EFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
A QVFQ + ++ L SWNS+I+ FAV+G EAL F ++ K D ++F G + A
Sbjct: 272 RQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILA 331
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
C+H GL+ +G +FD M+ + + P+IEH+GC+
Sbjct: 332 CTHGGLVNEGKLFFDSMEAEFSLKPRIEHYGCM 364
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 110/275 (40%), Gaps = 57/275 (20%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFPS-------- 95
V WT+ +S + ++G EA F M G P+ +T ++L CA +
Sbjct: 184 VVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRKVE 243
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFD-VMRGCDF--WTALLNGFVKRDYF 143
NV V+ ALL+MY+K G + A VF + R D W +++ F +
Sbjct: 244 EYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLW 303
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EAL F ++++GV+PD +T + V+ C + + G + F D++ +L
Sbjct: 304 REALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEG---------KLFFDSMEAEFSL 354
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+GC+ + G G +E ++L+ + D
Sbjct: 355 KPRIEHYGCM------------------------VDLLGRAGLLIESYSLIASMPVEPDA 390
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ 298
V + L ACS G +E D K+ + PQ
Sbjct: 391 VIWGALLGACSFHGNVELAELAMD---KLIHLEPQ 422
>gi|356506146|ref|XP_003521848.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 503
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 126/202 (62%), Gaps = 6/202 (2%)
Query: 110 KFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM-QISGVEPDYLTII 166
K+G ++LA VF+ M R WT +++G+ +R+ +AL FR M ++ G+EP +T++
Sbjct: 201 KWGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQPIKALTLFRKMIEVDGIEPTEVTLL 260
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRM-- 223
++ AN+ + I +H YV K+ F +VR+ N L+D+Y++ GCI + FQ +
Sbjct: 261 TIFPAIANIGCIKICQSVHVYVEKRGFNAFDVRITNALLDLYAKCGCIASMSRFFQEIPD 320
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
+R LVSW S I GFA+NG EALE F M+K + + V+F G L+ACSH GL+E+G+
Sbjct: 321 QRRNLVSWTSTISGFAMNGMGREALESFESMEKTGLRPNHVTFLGVLSACSHGGLVEEGI 380
Query: 284 QYFDIMKKIYRVSPQIEHHGCI 305
+F M K + + P I+H+GC+
Sbjct: 381 NFFVKMVKDWCLVPDIKHYGCV 402
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 142 YFEEALEYFRVMQ-----ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
Y EAL +F Q ++ D + + + AN G +H V K F+ +
Sbjct: 98 YPHEALHFFTYTQHCHTFLTYPSLDTFSFAFLCHASANPNYTHFGTQLHALVFKVGFQFH 157
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
V V L+ +YS G + A QVF M R LVSWN I G G V A FN M
Sbjct: 158 VYVKTGLLQMYSSSGLLVEAAQVFYEMQHRNLVSWNVFITGLIKWGEVELACSVFNQM 215
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA 91
V WTS+IS +G EA F M G P+H+TF+ +LS C+
Sbjct: 326 VSWTSTISGFAMNGMGREALESFESMEKTGLRPNHVTFLGVLSACS 371
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 152/283 (53%), Gaps = 21/283 (7%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ + W+ ISR +SG E ALE F +MR P+ TF ++L AD S
Sbjct: 211 NDVIPWSFMISRFAQSG-QSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKT 269
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
+V VS AL+ YAK G ++ + +F+ + R W ++ +V+
Sbjct: 270 IHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGD 329
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
E AL F M V+ +T S+L CA + L +GL +H K + +V V N
Sbjct: 330 GERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNA 389
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+Y++ G I+ AR +F + R VSWN+II G++++G EA++ FNLM++ K D
Sbjct: 390 LIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPD 449
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
E++F G L+ACS+ G +++G QYF MK+ Y + P +EH+ C+
Sbjct: 450 ELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCM 492
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 127/268 (47%), Gaps = 26/268 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS---------------G 89
TV + + I + +S +EA F R+ G + F T+L G
Sbjct: 11 TVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEWAELGRIVHG 70
Query: 90 CADFPS--NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
C +N + TAL+D Y+ G + +A VFD + D WT ++ + + D F E
Sbjct: 71 CVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSE 130
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
ALE+F M+++G +P+ T VL C ++ G +H V K +++ ++ V L++
Sbjct: 131 ALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLE 190
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y+R G + A + F M K ++ W+ +I FA +G +ALE F M++ ++ +
Sbjct: 191 LYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFT 250
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIY 293
F+ L A + ++ D+ K I+
Sbjct: 251 FSSVLQASAD-------IESLDLSKTIH 271
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 9/177 (5%)
Query: 119 VVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR 176
+VFD M R + L++G+ + + F EA E F + G E + +VL + ++
Sbjct: 1 MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60
Query: 177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIV 236
+G +H V K + N + L+D YS GC+ AR+VF + + +VSW +I
Sbjct: 61 WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
+A N EALE+F+ M+ FK + +F G L AC GLQ FD K ++
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACL-------GLQNFDAGKTVH 170
>gi|297734518|emb|CBI15765.3| unnamed protein product [Vitis vinifera]
Length = 375
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 147/286 (51%), Gaps = 31/286 (10%)
Query: 49 TSSISRHCRSGCILEAALEFTRMRL------------YGTNPSHITFVTLLS-----GCA 91
+S+I H + CILEA + R YGT PS IT +L+S C
Sbjct: 41 SSTIPDHQKLNCILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLIT--SLVSTYAHCDCL 98
Query: 92 DFPSN----------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK 139
D +++ + ++ K G D A VF M R W +++ G V+
Sbjct: 99 DLAHQLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVR 158
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
+ FEEAL +FR M S VEPD T SV+N CA + + +H + ++ + N +
Sbjct: 159 NERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFIL 218
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
+ L+D+YS+ G I A++VF + + WNS+I G A++G +A+ F+ M+
Sbjct: 219 SSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESV 278
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D ++F G LTACSH GL+E G +YFD+M++ Y + PQ+EH+G +
Sbjct: 279 SPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAM 324
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 38/223 (17%)
Query: 46 VQWTSSISRHCRSGCI----LEAALEFTRMRL-YGTNPSHITFVTLLSGCADFPSN---- 96
V W S I GC+ E AL F R L P TF ++++GCA S+
Sbjct: 147 VTWNSMIG-----GCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAE 201
Query: 97 -------------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRD 141
N ++S+AL+D+Y+K GR++ A VF+ ++ D W +++NG
Sbjct: 202 LVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHG 261
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL----WMHRYVPKQDFKDNV 197
+A+ F M++ V PD +T I +L C++ + G M R+ Q ++
Sbjct: 262 LALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHY 321
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSII-VGF 238
++D+ R G +E A + + M + +V W +++ +GF
Sbjct: 322 ---GAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLKMGF 361
>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 752
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 147/286 (51%), Gaps = 19/286 (6%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---- 94
K + V WT+ I+ + + G A F RMR +P+ TF ++S CA+
Sbjct: 318 KMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKW 377
Query: 95 -------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
+ + V+ +++ +Y+K G + A++VF + D W+ ++ + +
Sbjct: 378 GEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQ 437
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
Y +EA +Y M+ G +P+ + SVL+VC ++ L G +H +V V
Sbjct: 438 GGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMV 497
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
+ L+ +YS+ G +E A ++F M ++SW ++I G+A +G+ EA+ F +
Sbjct: 498 HSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKISSVGL 557
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
K D V+F G LTACSHAG+++ G YF +M Y++SP EH+GCI
Sbjct: 558 KPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCI 603
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 131/266 (49%), Gaps = 21/266 (7%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------ 92
K T V WT+ I+ +G +EA L F+ M + TF L AD
Sbjct: 217 KMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHH 276
Query: 93 ------------FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFV 138
F ++ +++T L MY K G+ D +F+ M+ D WT L+ +V
Sbjct: 277 GKAIHTQTIKQGFDESSFVINT-LATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYV 335
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
++ E A+E F+ M+ S V P+ T +V++ CAN+ G +H +V + D +
Sbjct: 336 QKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALS 395
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V N+++ +YS+ G ++ A VF + ++ ++SW++II ++ G+ EA +Y + M++
Sbjct: 396 VANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREG 455
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQ 284
K +E + + L+ C L+E G Q
Sbjct: 456 PKPNEFALSSVLSVCGSMALLEQGKQ 481
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 2/191 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
N+V VS+AL+DMY K G+++ VF M R WTA++ G V Y EAL YF M
Sbjct: 190 NSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEM 249
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
IS V D T L A+ L G +H KQ F ++ V NTL +Y++ G
Sbjct: 250 WISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKA 309
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
++ ++F++M +VSW ++I + G A+E F M+K ++ +F ++AC
Sbjct: 310 DYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISAC 369
Query: 274 SHAGLIEDGLQ 284
++ + + G Q
Sbjct: 370 ANLAIAKWGEQ 380
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 3/193 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYF 150
+ +N++ + L K G++ + +FD M D WT L+ G+V EAL F
Sbjct: 85 YSVHNMLELNSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILF 144
Query: 151 RVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
M + G++ D I L C + G +H + K ++V V + L+D+Y +
Sbjct: 145 SNMWVQPGLQRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMK 204
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G IE +VF++M KR +VSW +II G G+ EAL YF+ M D +F A
Sbjct: 205 VGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIA 264
Query: 270 LTACSHAGLIEDG 282
L A + + L+ G
Sbjct: 265 LKASADSSLLHHG 277
>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 700
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 149/279 (53%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WTS I + R G +A F +MR P+ TF T+ S CA
Sbjct: 270 VSWTSLIVAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCN 329
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++++ VS +++ MY+ G++D A+V+F MR D W+ ++ G+ + + EEA
Sbjct: 330 VFSLGLNDSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEA 389
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+YF M+ SG +P + S+L+V N+ L G +H + N V +TL+++
Sbjct: 390 FKYFSWMRQSGPKPTDFALASLLSVSGNMAVLEGGRQVHALAFCFGLEQNSTVRSTLINM 449
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
YS+ G I+ A ++F+ + +VS ++I G+A +G EA++ F K F D V+F
Sbjct: 450 YSKCGNIKEASKIFEETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFSPDSVTF 509
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTAC+H+G ++ G YF++M++ Y + P EH+GC+
Sbjct: 510 ISVLTACTHSGQLDLGFHYFNLMQEKYNMRPAKEHYGCM 548
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 113/250 (45%), Gaps = 21/250 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLY--GTNPSHITFVTLLSGCADFPS-------- 95
V WT+ I + + EA + F+ MR+ +P +L C +
Sbjct: 66 VSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSVVLKACGQSSNIAYGESLH 125
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
++V V ++LLDMY + G+++ + VF M R WTA++ G V ++
Sbjct: 126 AYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEMPFRNAVTWTAIITGLVHAGRYK 185
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E L YF M S D T L CA +R + G +H +V + F V V N+L
Sbjct: 186 EGLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQIHTHVIVRGFDATVWVANSLA 245
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+Y+ G + +F+ M +R +VSW S+IV + G +A+E F M+ +E
Sbjct: 246 TMYTECGEMRDGLCLFENMSERDVVSWTSLIVAYNRIGHEEKAVETFIKMRNSQVPPNEQ 305
Query: 265 SFTGALTACS 274
+F +AC+
Sbjct: 306 TFATMFSACA 315
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 118/258 (45%), Gaps = 19/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WT+ I+ +G E F+ M TF L CA
Sbjct: 169 VTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQIHTH 228
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
V V+ +L MY + G M +F+ M D WT+L+ + + + E+A
Sbjct: 229 VIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVAYNRIGHEEKA 288
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+E F M+ S V P+ T ++ + CA++ L G +H V D++ V N++M +
Sbjct: 289 VETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLGLNDSLSVSNSMMKM 348
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
YS G ++ A +FQ M R ++SW++II G++ GF EA +YF+ M++ K + +
Sbjct: 349 YSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFSWMRQSGPKPTDFAL 408
Query: 267 TGALTACSHAGLIEDGLQ 284
L+ + ++E G Q
Sbjct: 409 ASLLSVSGNMAVLEGGRQ 426
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 4/177 (2%)
Query: 112 GRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI--SGVEPDYLTIIS 167
G + +A VFD M D WTA++ G+V + +EA+ F M++ V PD +
Sbjct: 48 GNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSV 107
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
VL C + G +H Y K +V V ++L+D+Y R G IE + +VF M R
Sbjct: 108 VLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEMPFRN 167
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
V+W +II G G E L YF+ M +D +F AL AC+ ++ G Q
Sbjct: 168 AVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQ 224
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 123/211 (58%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
++ +LL MYAK G +D A +FD M D ++AL++G+V+ EEA F+ MQ
Sbjct: 374 DLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQ 433
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
VEPD T++S++ C+++ L G H V + +CN L+D+Y++ G I+
Sbjct: 434 ACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRID 493
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
+RQVF M R +VSWN++I G+ ++G EA F M F D V+F L+ACS
Sbjct: 494 LSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 553
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H+GL+ +G +F +M Y ++P++EH+ C+
Sbjct: 554 HSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 584
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 7/193 (3%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
++ V++ TALLDMYAK G + A VFD M R W+AL+ GFV +A F+
Sbjct: 270 TDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKA 329
Query: 153 MQISGV---EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
M G+ P +I S L CA++ L +G +H + K ++ N+L+ +Y++
Sbjct: 330 MLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK 387
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G I+ A +F M + VS+++++ G+ NG EA F MQ + D +
Sbjct: 388 AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSL 447
Query: 270 LTACSHAGLIEDG 282
+ ACSH ++ G
Sbjct: 448 IPACSHLAALQHG 460
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 111/256 (43%), Gaps = 32/256 (12%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSN-----------------NVMVSTALLDMYAK 110
+ RM + P++ TF L C+ + ++ VSTALLDMY K
Sbjct: 113 YRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVK 172
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQIS--GVEPDYLTII 166
+ A +F M D W A+L G+ + A+ + MQ+ + P+ T++
Sbjct: 173 CACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLV 232
Query: 167 SVLNVCANVRTLGIGLWMHRYV----------PKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
++L + A L G +H Y K D V + L+D+Y++ G + +A
Sbjct: 233 ALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 292
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALTACSH 275
R+VF M R V+W+++I GF + + +A F M +G+ S AL AC+
Sbjct: 293 RRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACAS 352
Query: 276 AGLIEDGLQYFDIMKK 291
+ G Q ++ K
Sbjct: 353 LDHLRMGEQLHALLAK 368
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 21/216 (9%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----- 95
+ TV +++ +S + ++G EA L F +M+ P T V+L+ C+ +
Sbjct: 402 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 461
Query: 96 ------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
+ + AL+DMYAK GR+DL+ VF++M D W ++ G+
Sbjct: 462 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHG 521
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVC 200
+EA F M G PD +T I +L+ C++ + G W H +
Sbjct: 522 LGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHY 581
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVS-WNSII 235
++D+ SR G ++ A + Q M R V W +++
Sbjct: 582 ICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 617
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+ L +R M V P+ T L C+ + G +HR+ + ++ V L+
Sbjct: 108 DGLHLYRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALL 167
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
D+Y + C+ A +F M R LV+WN+++ G+A +G A+ + MQ
Sbjct: 168 DMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 218
>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
Length = 903
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 146/289 (50%), Gaps = 31/289 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
V W + I+ + G + A F RM+L G P T++ LL A P
Sbjct: 388 AVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGR 447
Query: 95 -----------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGC-----DF--WTALLNG 136
++ + TA++ MYA G +D A F RG D W A+++
Sbjct: 448 KLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQ--RGAMEDRHDVVSWNAIISS 505
Query: 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
+ + + AL +FR M + GV P+ +T ++VL+ CA L G+ +H ++ + N
Sbjct: 506 LSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESN 565
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
V V L +Y R G +E AR++F+++ +R +V +N++I ++ NG GEAL+ F MQ
Sbjct: 566 VFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQ 625
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
+ + DE SF L+ACSH GL ++G + F M++ Y ++P +H+ C
Sbjct: 626 QEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYAC 674
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 22/227 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
V W ++I+ + +SG L+ ALE F RM+L G P+ IT V LS CA
Sbjct: 194 VSWNAAIAANAQSG-DLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQARAIHSIVR 252
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALE 148
++VSTAL YA+ G +D A VFD R W A+L + + + EA
Sbjct: 253 ESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAAL 312
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M G+ P +T+++ C+++R G +H ++ ++ + N L+D+Y+
Sbjct: 313 LFARMLHEGIPPSKVTLVNASTGCSSLR---FGRMIHACALEKGLDRDIVLGNALLDMYT 369
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
R G E AR +F+ + VSWN++I G + G + ALE F MQ
Sbjct: 370 RCGSPEEARHLFEGIPGNA-VSWNTMIAGSSQKGQMKRALELFQRMQ 415
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 119/272 (43%), Gaps = 29/272 (10%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--- 94
S+ + WT+ I+ + G A F RM+ G +TF+ +L CA
Sbjct: 86 SRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLS 145
Query: 95 --------------SNNVMVSTALLDMYAKFGRMDLATVVFDVM-RGCDFWTALLNGFVK 139
+++ LL +Y G + A ++F+ M R W A + +
Sbjct: 146 QGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERMERDLVSWNAAIAANAQ 205
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
+ ALE F+ MQ+ GV P +T++ L+VCA +R +H V + + + V
Sbjct: 206 SGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQ---ARAIHSIVRESGLEQTLVV 262
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
L Y+R G ++ A++VF R +R +VSWN+++ +A +G + EA F M
Sbjct: 263 STALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGI 322
Query: 260 KTDEVSFTGALTACS--------HAGLIEDGL 283
+V+ A T CS HA +E GL
Sbjct: 323 PPSKVTLVNASTGCSSLRFGRMIHACALEKGL 354
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 11/191 (5%)
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
LL +Y K + VF + R WT ++ + + + A+ F MQ GV D
Sbjct: 68 LLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCD 127
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
+T ++VL CA + L G +H ++ + + + N L+ +Y GC+ A +F+
Sbjct: 128 AVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFE 187
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS------- 274
RM +R LVSWN+ I A +G + ALE F MQ + ++ L+ C+
Sbjct: 188 RM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQARA 246
Query: 275 -HAGLIEDGLQ 284
H+ + E GL+
Sbjct: 247 IHSIVRESGLE 257
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 13/139 (9%)
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
++ +L + R L G +H + ++ + N L+ +Y + + +VF R+
Sbjct: 32 LVRLLRAAGDDRLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSRLE 89
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS---------- 274
R SW +II + +G A+ F+ MQ+ + D V+F L AC+
Sbjct: 90 VRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRS 149
Query: 275 -HAGLIEDGLQYFDIMKKI 292
HA ++E GL+ ++ +
Sbjct: 150 IHAWIVESGLEGKSVLANL 168
>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 142/281 (50%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
+ W + I H ++G ++A + M G P + V+LL C
Sbjct: 481 SVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIH 540
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
N V+ +LL +Y + F+ M + W A+L+G+ + +
Sbjct: 541 GFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPN 600
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL FR M G+EPD + I S+L C+ + LG+G +H + K ++ V +LM
Sbjct: 601 EALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLM 660
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G + ++++F R++ + + SWN +I GF V+G +A+E F M++ + D
Sbjct: 661 DMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRF 720
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L AC HAGL+ +GL Y M+ +Y++ P++EH+ C+
Sbjct: 721 TFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACV 761
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 122/251 (48%), Gaps = 24/251 (9%)
Query: 47 QWTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFPS---------- 95
QW + +S + R+ EA F + + P + TF L+ C
Sbjct: 176 QWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGM 235
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++ V A++ +Y K G +D A +FD M + W +L+ GF + ++ EA
Sbjct: 236 AVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEA 295
Query: 147 LEYFRVMQISG--VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
FR + SG + PD T++++L VC+ + +G+ +H K + VCN L+
Sbjct: 296 YRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALI 355
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN--LMQKGVFKTD 262
D+YS+ GC+ A +F+++ +++VSWNS+I ++ GFV E + M++ + + +
Sbjct: 356 DMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVN 415
Query: 263 EVSFTGALTAC 273
EV+ L AC
Sbjct: 416 EVTILNLLPAC 426
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 118/261 (45%), Gaps = 25/261 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTN--PSHITFVTLLSGCADFPSNNV----- 98
+ W S I +G LEA F + G P T VTLL C+ + +V
Sbjct: 277 ISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIH 336
Query: 99 ------------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
MV AL+DMY+K G + A ++F + W +++ + + +
Sbjct: 337 GMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVF 396
Query: 145 EALEYFRVMQISG--VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
E + R M + +E + +TI+++L C L +H Y + F+ + N
Sbjct: 397 ETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNA 456
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLMQKGVFKT 261
+ Y++ G + FA VF M+ +++ SWN++I G A NG +AL+ YF + + G+
Sbjct: 457 FIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGIL-P 515
Query: 262 DEVSFTGALTACSHAGLIEDG 282
D+ S L AC GL++ G
Sbjct: 516 DDFSIVSLLLACGRLGLLQYG 536
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 25/255 (9%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGT--NPSHITFVTLLSGCADFPS------ 95
+ V W S I + R G + E +M + + +T + LL C +
Sbjct: 378 SVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRA 437
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
+++ A + YAK G + A VF M + W A++ G +
Sbjct: 438 LHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGD 497
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+AL+++ M G+ PD +I+S+L C + L G +H +V + + N V +
Sbjct: 498 PIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVS 557
Query: 203 LMDVYSRFGCIE--FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
L+ +Y F C + + R F+RM + V WN+++ G++ N EAL F M +
Sbjct: 558 LLSLY--FHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLE 615
Query: 261 TDEVSFTGALTACSH 275
DE++ L ACS
Sbjct: 616 PDEIAIASILGACSQ 630
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
DF N R L+ +YS G +R VF R+ + L WN+++ G+ N EA+ F
Sbjct: 142 DFVLNTR----LITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTF 197
Query: 252 -NLMQKGVFKTDEVSFTGALTACS 274
L+ F+ D +F + AC+
Sbjct: 198 LELISVTEFQPDNFTFPCLIKACT 221
>gi|413938252|gb|AFW72803.1| hypothetical protein ZEAMMB73_565260 [Zea mays]
Length = 709
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 130/219 (59%), Gaps = 8/219 (3%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
FPS + V +L+ MYA+F ++D A +VF+ M D W +++ K D EA++ F
Sbjct: 343 FPS--ISVENSLMGMYARFEQIDAALLVFEGMEVKDIVSWNTIISCLAKTDRVNEAMDIF 400
Query: 151 RVMQIS---GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
V+ + G+ PD++T++S+L C+N L G +H YV K F +V +CN L+ +Y
Sbjct: 401 SVLHAAAGGGLAPDFVTVLSMLQACSNAGLLHQGQMLHGYVMKSGFVYDVSICNALISMY 460
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVSF 266
++ G I+FA +F+RM + LVSWNS+I + ++G AL F+ L G + ++F
Sbjct: 461 AKLGRIDFAEMIFERMDIKDLVSWNSMINAYGMHGDGHSALRVFHQLKDAGTPAPNAITF 520
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++ACSH+GL+ +G + F+ M + + + P ++H+ C+
Sbjct: 521 VSVISACSHSGLVSEGHKCFESMGRDHGIEPSMDHYACV 559
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 125/265 (47%), Gaps = 30/265 (11%)
Query: 45 TVQWTSSISRHCRSGCILEAALE-----FTRMRLYGTNPSHITFVTLLSGCADFPSNNVM 99
V WT+ +S GC+L A LE F M G P+++T ++++ CA
Sbjct: 204 VVSWTAIVS-----GCVLNAMLEEALGVFLMMLEDGVLPNNVTMLSVIQACA-------- 250
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFR--VMQISG 157
L+ FG + V+ ++ +L+ + K + EEA+ F+ ++
Sbjct: 251 ----LMGASELFGPVHALVVLLELEHDASVVNSLIMMYAKNGFVEEAIRLFKGFYLKTGS 306
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
V + + +VL C ++ G +H + K ++ V N+LM +Y+RF I+ A
Sbjct: 307 VCSNEDVLAAVLYGCTISGSVKNGEGLHAHTIKMGAFPSISVENSLMGMYARFEQIDAAL 366
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK---GVFKTDEVSFTGALTACS 274
VF+ M + +VSWN+II A V EA++ F+++ G D V+ L ACS
Sbjct: 367 LVFEGMEVKDIVSWNTIISCLAKTDRVNEAMDIFSVLHAAAGGGLAPDFVTVLSMLQACS 426
Query: 275 HAGLIEDG-LQYFDIMKK--IYRVS 296
+AGL+ G + + +MK +Y VS
Sbjct: 427 NAGLLHQGQMLHGYVMKSGFVYDVS 451
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 108/266 (40%), Gaps = 70/266 (26%)
Query: 52 ISRHCRSGCILEAALEFTRMRLYGTN----------PSHITFVTLLSGC----------- 90
IS HCR G L+A F M +G + P+ T ++ C
Sbjct: 100 ISAHCRLGAPLDALRAFLDMLAWGCSDEEGVDDVVRPNEFTAAAVVQACGLARDERLARM 159
Query: 91 ------ADFPSNNVMVSTALLDMYAKFG------RMDLATVVFDVMRGCDFWTALLNGFV 138
A ++ V +L++MYAK G R+ L DV+ WTA+++G V
Sbjct: 160 VHGYLVAGGFCDDPFVLGSLVNMYAKVGDVASARRLLLGLPCRDVVS----WTAIVSGCV 215
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
EEAL F +M GV P+ +T++SV+ CA
Sbjct: 216 LNAMLEEALGVFLMMLEDGVLPNNVTMLSVIQACA------------------------- 250
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN--LMQK 256
LM FG + + + H ++V NS+I+ +A NGFV EA+ F ++
Sbjct: 251 ----LMGASELFGPVHALVVLLELEHDASVV--NSLIMMYAKNGFVEEAIRLFKGFYLKT 304
Query: 257 GVFKTDEVSFTGALTACSHAGLIEDG 282
G ++E L C+ +G +++G
Sbjct: 305 GSVCSNEDVLAAVLYGCTISGSVKNG 330
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 12/192 (6%)
Query: 101 STALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG- 157
+ +LL Y + G + A + D M R + L++ + +AL F M G
Sbjct: 65 ANSLLHAYLQCGLLSRALRLLDEMPRRDAATYAPLISAHCRLGAPLDALRAFLDMLAWGC 124
Query: 158 ---------VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
V P+ T +V+ C R + +H Y+ F D+ V +L+++Y+
Sbjct: 125 SDEEGVDDVVRPNEFTAAAVVQACGLARDERLARMVHGYLVAGGFCDDPFVLGSLVNMYA 184
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G + AR++ + R +VSW +I+ G +N + EAL F +M + + V+
Sbjct: 185 KVGDVASARRLLLGLPCRDVVSWTAIVSGCVLNAMLEEALGVFLMMLEDGVLPNNVTMLS 244
Query: 269 ALTACSHAGLIE 280
+ AC+ G E
Sbjct: 245 VIQACALMGASE 256
>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 697
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 146/281 (51%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T V W S I+ + G + F RM G P+ T + L C+
Sbjct: 272 TVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVH 331
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++ ++++L+D+Y K G+++ A +F +M W +++G+V
Sbjct: 332 GYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLF 391
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+AL F M S VEPD +T SVL C+ + L G +H + +++ +N V L+
Sbjct: 392 DALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALL 451
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G +E A VF+ + +R LVSW S+I + +G V EALE F M + K D V
Sbjct: 452 DMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRV 511
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F L+ACSHAGL++DGL +F+ M +Y + P+IEH+ C+
Sbjct: 512 TFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCL 552
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 131/261 (50%), Gaps = 19/261 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSN-------- 96
W + IS + +SG EA F MR +G P +T T +S CA D
Sbjct: 175 WNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELV 234
Query: 97 ------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
+ VS AL+DMY K G++++A VF+ M + W +++NG+ + ++
Sbjct: 235 NSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQ 294
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F+ M GV+P T+ S L C+ L G ++H Y+ + + ++ + ++LMD+Y
Sbjct: 295 LFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYF 354
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G +E A +F+ M K T VSWN +I G+ G + +AL F M K + D ++FT
Sbjct: 355 KCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTS 414
Query: 269 ALTACSHAGLIEDGLQYFDIM 289
L ACS +E G + +++
Sbjct: 415 VLAACSQLAALEKGREIHNLI 435
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 5/206 (2%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+++V ++L+ MYAK + A +FD M D W +++ + + FEEAL YF +M+
Sbjct: 140 DIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMR 199
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
G EPD +TI + ++ CA + L G +H+ + F+ + V L+D+Y + G +E
Sbjct: 200 RFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLE 259
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +VF++M +T+V+WNS+I G+ G ++ F M K + T L ACS
Sbjct: 260 MAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACS 319
Query: 275 H-AGLIEDGLQYFDIMKKIYRVSPQI 299
A L+E + I++ R+ P I
Sbjct: 320 QSAQLLEGKFVHGYIIRN--RIQPDI 343
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 96/183 (52%), Gaps = 4/183 (2%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG---CDFWTALLNGFVKRDYFEEALEYF-R 151
N+V V L+ +Y D A VFDV+ L+ G+ + ++EAL F +
Sbjct: 36 NDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDK 95
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
+M ++PD T SVL C +R + +G +H + K+ ++ V ++L+ +Y++
Sbjct: 96 LMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCN 155
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
E A ++F M + + WN++I + +G EAL YF +M++ F+ D V+ T A++
Sbjct: 156 EFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAIS 215
Query: 272 ACS 274
+C+
Sbjct: 216 SCA 218
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D +I +L N ++L G +H+ V +++V VC L+ +Y ++A+ VF
Sbjct: 2 DARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVF 61
Query: 221 QRMHKRTLVSW-NSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVSFTGALTACS---- 274
+ +S N ++ G+ N EAL F+ LM K D ++ L AC
Sbjct: 62 DVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRR 121
Query: 275 -------HAGLIEDGL 283
H L+++GL
Sbjct: 122 VVLGQMIHTCLVKEGL 137
>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Glycine max]
Length = 775
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 147/280 (52%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-------- 96
++ W++ ++ + G +A F M G PS T V +++ C+D +
Sbjct: 285 SITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHG 344
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
+ V +AL+DMYAK G + A F+ ++ D WT+++ G+V+ +E
Sbjct: 345 YSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEG 404
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL + MQ+ GV P+ LT+ SVL C+N+ L G MH + K +F + + + L
Sbjct: 405 ALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSA 464
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G ++ ++F RM R ++SWN++I G + NG E LE F M K D V+
Sbjct: 465 MYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVT 524
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L+ACSH GL++ G YF +M + ++P +EH+ C+
Sbjct: 525 FVNLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYACM 564
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 95/194 (48%), Gaps = 4/194 (2%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
S++V +++LL+MY K G + A +FD M R W +++G+ ++ +EA E F++
Sbjct: 148 SHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKL 207
Query: 153 M--QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M + G + SVL+ + G +H K V V N L+ +Y +
Sbjct: 208 MRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKC 267
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G +E A + F+ + ++W++++ GFA G +AL+ F M + E + G +
Sbjct: 268 GSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVI 327
Query: 271 TACSHAGLIEDGLQ 284
ACS A I +G Q
Sbjct: 328 NACSDACAIVEGRQ 341
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 11/206 (5%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE---YF 150
++ ++ +L+++YAK A +VFD + D W L+N F ++ +L F
Sbjct: 43 SSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLF 102
Query: 151 R--VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
R VM + P+ T+ V + + G H K +V ++L+++Y
Sbjct: 103 RQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYC 162
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM---QKGVFKTDEVS 265
+ G + AR +F M +R VSW ++I G+A EA E F LM +KG +E
Sbjct: 163 KTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGK-NENEFV 221
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKK 291
FT L+A + L+ G Q + K
Sbjct: 222 FTSVLSALTCYMLVNTGRQVHSLAMK 247
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
+L ++ L C + L G +H + + ++ N+L+++Y++ A VF
Sbjct: 10 HLQVLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFD 69
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV-----SFTGALTACS 274
++ + +VSWN +I F+ +L +L ++ V + + TG TA S
Sbjct: 70 SINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAAS 127
>gi|255568506|ref|XP_002525227.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535524|gb|EEF37193.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 420
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 141/269 (52%), Gaps = 19/269 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----- 96
+ V WT+ I+ + + +A L F +M G P+H T +LL PS+
Sbjct: 144 VKDVVTWTALITGYSQHDRPKDALLLFPQMLTLGFRPNHFTLSSLLKASGVSPSDSNGRL 203
Query: 97 ------------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
NV V +ALLDMYA+ G ++ A +FD + R W AL+ G ++
Sbjct: 204 LHAFCIKYGYSCNVYVGSALLDMYARSGHLEEALFIFDGLPSRNEVSWNALIAGCARKGD 263
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
E A +F M ++P T VL+ CA++ +L G W+H + K K V NT
Sbjct: 264 QELAFSFFSKMLRENIQPTQFTYSIVLSACASIGSLEQGKWVHALLIKSGAKLVDFVGNT 323
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+ +Y++ G IE AR+VF + KR +VSWNS++ G+A +G AL F M +
Sbjct: 324 LLGMYAKSGSIEDARKVFDGLVKRDVVSWNSMLAGYAQHGLGNIALLIFRQMLIIGVAPN 383
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+++F LTACSHAGL+ +GL YF++M+K
Sbjct: 384 DITFLCVLTACSHAGLLAEGLHYFNLMRK 412
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 2/189 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+++++ +L+MYAK G + A VFD M D WTAL+ G+ + D ++AL F M
Sbjct: 114 HDLVIQNTILNMYAKCGNLGEARKVFDQMPVKDVVTWTALITGYSQHDRPKDALLLFPQM 173
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
G P++ T+ S+L + G +H + K + NV V + L+D+Y+R G +
Sbjct: 174 LTLGFRPNHFTLSSLLKASGVSPSDSNGRLLHAFCIKYGYSCNVYVGSALLDMYARSGHL 233
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A +F + R VSWN++I G A G A +F+ M + + + +++ L+AC
Sbjct: 234 EEALFIFDGLPSRNEVSWNALIAGCARKGDQELAFSFFSKMLRENIQPTQFTYSIVLSAC 293
Query: 274 SHAGLIEDG 282
+ G +E G
Sbjct: 294 ASIGSLEQG 302
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 63/127 (49%)
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
L ++ + +EPD + C L G +H ++ FK ++ + NT+++
Sbjct: 65 GLHVLDLIDRASLEPDRTLYHILFKKCTLFNKLKEGQLVHAHLLNSRFKHDLVIQNTILN 124
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + AR+VF +M + +V+W ++I G++ + +AL F M F+ + +
Sbjct: 125 MYAKCGNLGEARKVFDQMPVKDVVTWTALITGYSQHDRPKDALLLFPQMLTLGFRPNHFT 184
Query: 266 FTGALTA 272
+ L A
Sbjct: 185 LSSLLKA 191
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 147/315 (46%), Gaps = 50/315 (15%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA--------- 91
+ V W + +C++ EA L+F +M+ G + T+LS C
Sbjct: 132 AVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRTGK 191
Query: 92 ---------------------------------------DFPSNNVMVSTALLDMYAKFG 112
P +++ STA++ YA+
Sbjct: 192 SIHSYMLVSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNR 251
Query: 113 RMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN 170
+ ++A +FD M D W+A+++G+ + EAL F MQ G+ PD +T++SV++
Sbjct: 252 KFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVIS 311
Query: 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS 230
CAN+ +L W+H ++ + +CN L+D++++ G I A +F M ++ +++
Sbjct: 312 ACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVIT 371
Query: 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
W S+I FA++G AL F M+ + +EV+F L AC HAGL+ +G F M
Sbjct: 372 WTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMV 431
Query: 291 KIYRVSPQIEHHGCI 305
+ Y + P+ EH+GC+
Sbjct: 432 QQYGIEPKHEHYGCM 446
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 33/214 (15%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
V TAL+ YA G + A VFD M R W +L+ + + ++EAL F M+ SG
Sbjct: 107 VRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSG 166
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF-- 215
V D L + +VL+ C ++R L G +H Y+ D N + + L+++Y+ +E
Sbjct: 167 VLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAE 226
Query: 216 -----------------------------ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
AR +F M ++ +VSW+++I G+A + E
Sbjct: 227 KLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNE 286
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
AL FN MQ+ + DEV+ ++AC++ G ++
Sbjct: 287 ALSLFNDMQECGIRPDEVTMLSVISACANLGSLD 320
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 175 VRTLGIGLWM---HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW 231
R +G G ++ H + D+ V L+ Y+ GC+ AR+VF M R +VSW
Sbjct: 80 ARCVGAGAYVRGAHALAFRVGSLDDGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSW 139
Query: 232 NSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
++ + EAL F M+ +D++ L+AC H
Sbjct: 140 GVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGH 183
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 129/206 (62%), Gaps = 2/206 (0%)
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVE 159
T ++ YA+FG MD A VFD M D W AL+ G+V+ +EAL F MQ + VE
Sbjct: 292 TTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVE 351
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD +T++++L+ C+ + L +G+W+H Y+ ++ +V + L+D+YS+ G IE A +V
Sbjct: 352 PDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRV 411
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F+ + ++ ++W ++I G A +G A++YF M + + DE++F G L+AC HAGL+
Sbjct: 412 FKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLV 471
Query: 280 EDGLQYFDIMKKIYRVSPQIEHHGCI 305
++G ++F +M Y + +++H+ C+
Sbjct: 472 KEGQEFFSLMVSKYHLERKMKHYSCM 497
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 122/269 (45%), Gaps = 54/269 (20%)
Query: 73 LYGTNPSHITFVTLLSGCADFPSNN-----------------VMVSTALLDMYAKFGRMD 115
L P H+TF LL CA N V V A + A M
Sbjct: 113 LRSARPDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMA 172
Query: 116 LATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF-RVMQISGVEPDYLTIISVLNVC 172
A +FD D W L+ G+V+R EALE F R++ V PD +T+I V++
Sbjct: 173 EARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGS 232
Query: 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
A +R L +G +H YV + VR+ N +MD+Y + G +E A+ VF+ + K+T+VSW
Sbjct: 233 AQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWT 292
Query: 233 SIIVGFA--------------------------VNGFV-----GEALEYFNLMQKGVFKT 261
++IVG+A + G+V EAL F+ MQ+ + +
Sbjct: 293 TMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEP 352
Query: 262 DEVSFTGALTACSHAGLIEDGL---QYFD 287
D+++ L+ACS G +E G+ Y D
Sbjct: 353 DDITMVNLLSACSQLGALEMGMWVHHYID 381
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 23/208 (11%)
Query: 56 CRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNV 98
C+ G EA F M+ P IT V LLS C+ S +V
Sbjct: 332 CKRG--KEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSV 389
Query: 99 MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQIS 156
M+ T L+DMY+K G ++ A VF + + WTA+++G + + A++YF+ M
Sbjct: 390 MLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIEL 449
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
G++PD +T I VL+ C + + G + V K + ++ + ++D+ R G ++
Sbjct: 450 GLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDE 509
Query: 216 ARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
A + M + V W ++ ++G
Sbjct: 510 AEHLVNTMPMEPDAVVWGALFFACRMHG 537
>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
Length = 514
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 121/204 (59%), Gaps = 2/204 (0%)
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
++D + + G ++A VF M D W +++ G+V+ FEEAL F+ M S VEPD
Sbjct: 85 VIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPD 144
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
T SV+ CA + L W+H + ++ + N + + L+D+YS+ G IE A++VF+
Sbjct: 145 KFTFASVITACARLGALNHAQWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFE 204
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
+ + + WNS+I G AV+G +A+ F+ M+ D ++F G L ACSH GL+++
Sbjct: 205 SVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKE 264
Query: 282 GLQYFDIMKKIYRVSPQIEHHGCI 305
G +YFD+M+ Y + PQ+EH+G +
Sbjct: 265 GRKYFDLMENYYSIKPQLEHYGAM 288
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 19/148 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W S I + R+G EA F M P TF ++++ CA +
Sbjct: 111 VTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWLHDL 170
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
N ++S+AL+DMY+K GR++ A VF+ + D W +L+NG +A
Sbjct: 171 MVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDA 230
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCAN 174
+ F M+ V PD LT + +L C++
Sbjct: 231 MMVFSKMEAENVLPDSLTFLGILKACSH 258
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N ++D + R G E A++VF +M R +V+WNS+I G+ NG EAL F M +
Sbjct: 83 NLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVE 142
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIM 289
D+ +F +TAC+ G + D+M
Sbjct: 143 PDKFTFASVITACARLGALNHAQWLHDLM 171
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 123/217 (56%), Gaps = 2/217 (0%)
Query: 91 ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
A+ S +V+ TA+L + G +D A +FD M D W A+L G+V+ EAL
Sbjct: 183 AEIVSPDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALG 242
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F MQ +GV +T++SVL CA + L G+W+H YV + + +V + L+D+YS
Sbjct: 243 LFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYS 302
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G + + +VF+ M +R + +W S + G A+NG E LE F M+ + + V+F
Sbjct: 303 KCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVA 362
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L CS AGL+E+G FD MK ++V P +EH+GC+
Sbjct: 363 VLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCM 399
>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
Length = 667
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 151/284 (53%), Gaps = 24/284 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVM---- 99
+ V WT + + +G + + F +MR P I FV L+S C S N++
Sbjct: 190 SIVSWTIILGGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCK--LSGNLLLAML 247
Query: 100 ---------------VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
+ L+ MYAK + A VFD + + WT++++G+ + Y
Sbjct: 248 VHSLLLKSGFDHKDPIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGY 307
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
EAL F ++ + P+ LT+ +VL+ CA + +L +G + +Y+ ++RV +
Sbjct: 308 PNEALHLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTS 367
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKT 261
L+ ++ + G I+ A+ +F+R+ + L W+++I G+AV+G EAL F+ MQ V K
Sbjct: 368 LIHMFCKCGSIKKAQALFERIPNKDLAVWSAMINGYAVHGMGKEALNLFHKMQNEVGIKP 427
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D + +T L ACSH+GLIEDGL+YF M+K + + P I+H+ C+
Sbjct: 428 DAIVYTSVLLACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYSCL 471
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 123/257 (47%), Gaps = 17/257 (6%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----- 96
I + V W S IS HCR I ++ +M+L G S TF L+ C+ P
Sbjct: 91 IKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASCS-LPQGLSIHG 149
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
++ ++ +++ MY + ++D A VF + + WT +L G++ +
Sbjct: 150 YITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTIILGGYLSAGDVAK 209
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
F M+ V PD + +++++ C L + + +H + K F + N L+
Sbjct: 210 VFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSGFDHKDPIDNLLVA 269
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ + AR+VF +H++++ W S+I G+A G+ EAL FN++ + + +E++
Sbjct: 270 MYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLFNMLLRTASRPNELT 329
Query: 266 FTGALTACSHAGLIEDG 282
L+AC+ G + G
Sbjct: 330 LATVLSACAEMGSLRMG 346
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 23/222 (10%)
Query: 75 GTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLA 117
G + S TF +L CA PS +V V TAL+D+Y+K A
Sbjct: 23 GVHGSEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHSA 82
Query: 118 TVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
+VFD M + W ++++ + + +++ + MQ+ G+E T L C
Sbjct: 83 RLVFDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASC--- 139
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
+L GL +H Y+ K ++ + N++M +Y R I+ A VF +H++++VSW I+
Sbjct: 140 -SLPQGLSIHGYITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTIIL 198
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
G+ G V + FN M+ D + F ++ C +G
Sbjct: 199 GGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSG 240
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%)
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
SGV T VL CA + +L +H ++ F+ +V V L+DVYS+ C
Sbjct: 22 SGVHGSEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHS 81
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
AR VF +M ++LVSWNSII + + ++ MQ + +FTG L +CS
Sbjct: 82 ARLVFDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASCS 140
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 130/219 (59%), Gaps = 11/219 (5%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
D S NVM++ YAK G M LA +FD + D W +++G+V+ ALE
Sbjct: 178 DLVSWNVMITA-----YAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALEL 232
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---VRVCNTLMDV 206
F MQ G +PD +T++S+L+ CA+ L +G +H + F N V + N L+D+
Sbjct: 233 FEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDM-FSRNGFPVVLGNALIDM 291
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G ++ A +VF M + + +WNSI+ G A++G V E+++ F M KG + DE++F
Sbjct: 292 YAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITF 351
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACSH G+++ G ++F++M+ YRV P I+H+GCI
Sbjct: 352 VAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCI 390
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 31/225 (13%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------ 92
V W IS + R G L A F +M+ G P +T ++LLS CAD
Sbjct: 210 VVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHS 269
Query: 93 -----FPSNN--VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYF 143
F N V++ AL+DMYAK G M A VF MR D W +++ G +
Sbjct: 270 SLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHV 329
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-----LWMHRYVPKQDFKDNVR 198
E+++ F M V PD +T ++VL C++ + G L H+Y + N++
Sbjct: 330 LESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKY----RVEPNIK 385
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
++D+ R G ++ A + M + V W +++ V+G
Sbjct: 386 HYGCIVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHG 430
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 68/187 (36%), Gaps = 62/187 (33%)
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS--------- 208
V PD LT VL C + G+ +H +V K + + V N L+ +++
Sbjct: 78 VRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAA 137
Query: 209 ----------------------RFGCIEFARQVFQRMHKRTLVSWNSIIVGFA------- 239
R G I AR +F + LVSWN +I +A
Sbjct: 138 ALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMAL 197
Query: 240 -------------------VNGFVG-----EALEYFNLMQKGVFKTDEVSFTGALTACSH 275
++G+V ALE F MQ+ K D V+ L+AC+
Sbjct: 198 ARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACAD 257
Query: 276 AGLIEDG 282
+G ++ G
Sbjct: 258 SGDLDVG 264
>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
Length = 564
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 144/281 (51%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG---CAD---------- 92
V W S IS + + G + A F M G +P +T V+L S C D
Sbjct: 235 VTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVAQCGDERGAKSVHCY 294
Query: 93 -----FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ +++ A++DMYAK ++D A +VFD + D W L+ G+++ E
Sbjct: 295 VRRRGWDVGDIIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNE 354
Query: 146 ALEYFRVMQ-ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
A+ + MQ G++P T +S+L +N+ L G+ MH K +V V L+
Sbjct: 355 AVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQGMRMHALSIKTGLNLDVYVSTCLI 414
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G + A +F+ M +R+ WN+II G V+G +AL F+ MQ+ K D V
Sbjct: 415 DLYAKCGKLVEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKALNLFSQMQQEGIKPDNV 474
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F L ACSHAGL++ G +FD+M+ +Y + P +H+ C+
Sbjct: 475 TFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYACM 515
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 92/183 (50%), Gaps = 2/183 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
NV S +L+ Y +FGR+ A VFD M R W A+L+G + +A+ F M
Sbjct: 101 NVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMV 160
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
GV D +T+ SVL +C + + L MH Y K+ + VCN L+DVY + G +
Sbjct: 161 GEGVAGDAVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLV 220
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
AR VF M R LV+WNSII + G V A+E F+ M K D ++ +A +
Sbjct: 221 EARWVFGGMALRDLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVA 280
Query: 275 HAG 277
G
Sbjct: 281 QCG 283
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 120/258 (46%), Gaps = 21/258 (8%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------- 94
W + +S CR+ ++A F RM G +T ++L C
Sbjct: 136 WNAMLSGLCRNARAVDAVALFGRMVGEGVAGDAVTLSSVLPMCVLLGDRALALVMHVYAV 195
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
S + V AL+D+Y K G + A VF M D W ++++ + + A+E
Sbjct: 196 KRGLSGELFVCNALIDVYGKLGMLVEARWVFGGMALRDLVTWNSIISAYEQGGKVAAAVE 255
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-DNVRVCNTLMDVY 207
F M SGV PD LT++S+ + A +H YV ++ + ++ N ++D+Y
Sbjct: 256 LFHGMMKSGVSPDVLTLVSLASAVAQCGDERGAKSVHCYVRRRGWDVGDIIAGNAVVDMY 315
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEVSF 266
++ I+ A+ VF + R +VSWN++I G+ NG EA+ +N MQ K + +F
Sbjct: 316 AKLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTF 375
Query: 267 TGALTACSHAGLIEDGLQ 284
L A S+ G ++ G++
Sbjct: 376 VSILPAYSNLGALQQGMR 393
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 129/212 (60%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+V++ T L+ YA G ++ A VF+ M D W ++++ + + EEAL+ + M
Sbjct: 159 QDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQM 218
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+IS V D T++S+L+ CA+V L +G+ MHR+ ++ +N+ V N L+D+Y++ G +
Sbjct: 219 RISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSL 278
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A +F M KR + +WNS+IVG+ V+G EA+ +F M + + ++F G L C
Sbjct: 279 ASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGC 338
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH GL+++G+QYF +M + + P I+H+GC+
Sbjct: 339 SHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCM 370
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD--VYSRFGCIEFARQVFQ 221
I+S+L C ++R L +H ++ ++ N + L++ S G + +A+ VF
Sbjct: 25 AILSLLQGCNSMRKLHK---IHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFH 81
Query: 222 RMHKRTLVSWNSIIVGF--AVNGFVGEALEYFNLMQKGVF-KTDEVSFTGALTACSHA 276
R+H +WNS+I GF + + +A+ ++N M + D +F+ L AC A
Sbjct: 82 RIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEA 139
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 143/280 (51%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------- 91
V W S I+ + G F RM G P+ T ++L C+
Sbjct: 465 VVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHG 524
Query: 92 ----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ ++ V+++L+D+Y K G + A VF M + W +++G+VK + E
Sbjct: 525 YIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLE 584
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL F M+ +GV+PD +T SVL C+ + L G +H ++ + + N V L+D
Sbjct: 585 ALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLD 644
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G ++ A +F ++ +R VSW S+I + +G EAL+ F MQ+ K D+V+
Sbjct: 645 MYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVT 704
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L+ACSHAGL+++G YF+ M Y P +EH+ C+
Sbjct: 705 FLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCL 744
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 104/182 (57%), Gaps = 2/182 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V+V ++ + MYAK + A +FD M R W +++ + + E+ALE F M+
Sbjct: 332 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 391
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+SG +PD +T+ +V++ CA + L G +H + + F + V + L+D+Y + GC+E
Sbjct: 392 VSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLE 451
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A++VF+++ ++ +VSWNS+I G+++ G +E F M + + + + L ACS
Sbjct: 452 MAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 511
Query: 275 HA 276
+
Sbjct: 512 RS 513
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 4/191 (2%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG---CDFWTALLNGFVKRDYFEEALEYF-R 151
NN+ + +L+++Y A +VF + W L+ K F E LE F R
Sbjct: 228 NNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHR 287
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
++ ++PD T SVL C+ + +G G +H +V K F +V V ++ + +Y++
Sbjct: 288 LLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCN 347
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
E A ++F M +R + SWN++I + +G +ALE F M+ FK D V+ T ++
Sbjct: 348 VFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVIS 407
Query: 272 ACSHAGLIEDG 282
+C+ +E G
Sbjct: 408 SCARLLDLERG 418
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 154/278 (55%), Gaps = 20/278 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------D 92
V W++ + + +G + A F RM G N +T+ ++++G A +
Sbjct: 194 VSWSTMVGGYAAAGELDVAREMFDRMPAIGRNV--VTWNSMVTGFARHGLLPLARKMFDE 251
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P N++ A+L Y+ MD A +FDVM D WT +++G+ + +++ LE F
Sbjct: 252 MPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELF 311
Query: 151 RVMQI-SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD--FKDNVRVCNTLMDVY 207
R MQ S V+P+ +T++SVL+ CAN+ L G W+H ++ K + + L+D+Y
Sbjct: 312 RAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMY 371
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
++ G + A ++F + ++ + +WN++I A+NG ++++ F M++ K ++++F
Sbjct: 372 AKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFV 431
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G LTACSH GL+++G + F M V P+++H+GC+
Sbjct: 432 GVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCM 469
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 48/212 (22%)
Query: 88 SGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+G AD S N ++ Y K G M+ A VFD M R W+ ++ G+ +
Sbjct: 157 AGVADVVSWNTVIGG-----YVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDV 211
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A E F M G NV N+++
Sbjct: 212 AREMFDRMPAIG-------------------------------------RNVVTWNSMVT 234
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
++R G + AR++F M R LVSWN+++ G++VN + A E F++M + D VS
Sbjct: 235 GFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMP----EKDVVS 290
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSP 297
+T ++ + AG +D L+ F M+ V P
Sbjct: 291 WTCMISGYAQAGRYQDTLELFRAMQTESNVQP 322
>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
Length = 878
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 148/276 (53%), Gaps = 16/276 (5%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC-ADFPSN-------- 96
V WT+ I+ ++G + AA F+RMR G P+ T+ T+L+ A P
Sbjct: 374 VSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQVIKT 433
Query: 97 ----NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
+V TALL Y+K + A +F ++ D W+A+L + + + A F
Sbjct: 434 NYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIF 493
Query: 151 RVMQISGVEPDYLTIISVLNVCAN-VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
M + G++P+ TI SV++ CA+ + +G H K D + V + L+ +Y+R
Sbjct: 494 IKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYAR 553
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G IE A+ +F+R R LVSWNS++ G+A +G+ +AL+ F M+ + D V+F
Sbjct: 554 KGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSV 613
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ C+HAGL+E+G +YFD M + Y ++P +EH+ C+
Sbjct: 614 IMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACM 649
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 21/242 (8%)
Query: 55 HCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFPS------------------ 95
H R G + +A F + R +G V +L C P
Sbjct: 77 HARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDR 136
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+V V T+L+DMY K+ + VF+ M R WT+LL G+++ + +E F M
Sbjct: 137 GDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRM 196
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ GV P+ +T SVL+V A+ + +G +H K V VCN+LM++Y++ G +
Sbjct: 197 RAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLV 256
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E AR VF M R +VSWN+++ G +NG EAL+ F+ + + + ++ + C
Sbjct: 257 EEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLC 316
Query: 274 SH 275
++
Sbjct: 317 AN 318
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 20/247 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS-----GCADFP------ 94
V WTS ++ + + G + + F RMR G P+ +TF ++LS G D
Sbjct: 171 VTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQ 230
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ V V +L++MYAK G ++ A VVF M D W L+ G V + EA
Sbjct: 231 SVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEA 290
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F + S T +V+ +CAN++ LG+ +H V K+ F V LMD
Sbjct: 291 LQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDA 350
Query: 207 YSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
YS+ G + A +F M + +VSW ++I G NG V A F+ M++ ++ +
Sbjct: 351 YSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFT 410
Query: 266 FTGALTA 272
++ LTA
Sbjct: 411 YSTILTA 417
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 138 VKRDYFEEALEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KD 195
+R +AL++F V + G ++ VL VC +V +G +H + +
Sbjct: 78 ARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRG 137
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLM 254
+V V +L+D+Y ++ + R+VF+ M KR +V+W S++ G+ +G + + +E +F +
Sbjct: 138 DVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMR 197
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDG 282
+GV+ + V+F L+ + G+++ G
Sbjct: 198 AEGVWP-NSVTFASVLSVVASQGMVDLG 224
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 143/267 (53%), Gaps = 26/267 (9%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVST 102
+ V W++ IS R G I AA E L+ +P D S NVM++
Sbjct: 179 EDAVAWSAMISGFARRGDI-GAARE-----LFDESP-----------VKDLVSWNVMITA 221
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
YAK G M A +FD D W A+++G+V+ ++A+E F MQ G +P
Sbjct: 222 -----YAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKP 276
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ--DFKDNVRVCNTLMDVYSRFGCIEFARQ 218
D +T++S+L+ CA+ L G +H ++ + + N L+D+Y++ G + A +
Sbjct: 277 DTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALE 336
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF M + + +WNSII G A++G E++ F M +G K DE++F L ACSH G+
Sbjct: 337 VFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGM 396
Query: 279 IEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++ G +YF +M++ YR+ P I+H+GC+
Sbjct: 397 VDKGHEYFSLMQQRYRIEPNIKHYGCM 423
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 13/180 (7%)
Query: 117 ATVVFDVMRGCD--FWTALLNGFVKRDYFEEALE-YFRVMQISG------VEPDYLTIIS 167
A +VFD + D + L+ G D +A+ Y R+ + S + PD T
Sbjct: 61 ARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPF 120
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
VL CA + G +H +V K + + V N L+ +++ G + A +F +
Sbjct: 121 VLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEARED 180
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
V+W+++I GFA G +G A E F+ + V D VS+ +TA + G + + FD
Sbjct: 181 AVAWSAMISGFARRGDIGAARELFD--ESPV--KDLVSWNVMITAYAKLGDMAPARELFD 236
>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 740
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 131/229 (57%), Gaps = 17/229 (7%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKR----------- 140
P + V +LL+ YAK+G+M ++ +FD + D W +LN + +
Sbjct: 283 PPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFD 342
Query: 141 --DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
D+ E+L FR MQ+ G+ P+ +TI+++++ C+N+ + G W+H +V + K N
Sbjct: 343 DADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRF 402
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRM--HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
V +D+YS+ GC+ A QVF +M + R + ++I GFAV+G+ +ALE + M+
Sbjct: 403 VGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKF 462
Query: 257 GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D +F + ACSH GL+E+GL+ F MK+++ V P++EH+GC+
Sbjct: 463 KGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCL 511
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 6/220 (2%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
D PS + + A+L YA+ G++D A +F M R W ++ G+ EAL
Sbjct: 176 DMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGL 235
Query: 150 FRVM---QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
FR M V P+ T+ ++L CA L G+W+H Y+ + D+ + L+D+
Sbjct: 236 FRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDM 295
Query: 207 YSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
Y + G I+ A QVF++ KR L SW ++I G A++G +AL F++MQ D+V+
Sbjct: 296 YCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPDDVT 355
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L AC+H GL+++GL YF M+ +R++P+IEH+GC+
Sbjct: 356 LVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCM 395
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
+ TALL YA G D A +FD M +G TA+ V +A+ F M G
Sbjct: 48 LPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADG 107
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF---------KDNVRVCNTLMDVYS 208
V PD + + L C G G W R P + + +V V L+ VY
Sbjct: 108 VFPDNVALAVALGACH-----GAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYG 162
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
G + +R+VF M R+ ++WN+++ +A +G V A E F M + D VS+
Sbjct: 163 ECGKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMP----RRDVVSWNT 218
Query: 269 ALTACSHAGLIEDGLQYFDIM 289
+ AG + L F M
Sbjct: 219 VMAGYCVAGRCREALGLFRQM 239
>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 655
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 148/283 (52%), Gaps = 24/283 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL---LSGCADFPSN------ 96
V W++ I + + I EA F +M L + + +T V + L GCA F
Sbjct: 272 VTWSAMIGGYVENEMIKEAGEVFLQM-LVNADMAMVTPVAIGLILMGCARFGDLSGGRCV 330
Query: 97 -----------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYF 143
++ V ++ YAK+G + A F + D + +L++G V+
Sbjct: 331 HCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVENCRA 390
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EE+ F M+ SG+ PD T++ +L C+N+ LG G H Y + N +CN L
Sbjct: 391 EESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSICNAL 450
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
MD+Y++ G + A++VF MHKR +VSWN+++ GF ++G EAL FN MQ DE
Sbjct: 451 MDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQDTGVHPDE 510
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKK-IYRVSPQIEHHGCI 305
V+ L+ACSH+GL+++G Q F+ M + + V P+++H+ C+
Sbjct: 511 VTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDHYNCM 553
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 116/259 (44%), Gaps = 22/259 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ W I + +G +A + +M G P+ T+ +L CA +
Sbjct: 69 IAWDLMIRAYVSNGFAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAIEDGKLIHSH 128
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++ V TAL+D YAK G +D+A VFD M D W A+++GF +
Sbjct: 129 VKCSNFAADMYVCTALVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGFSLHCCLTDV 188
Query: 147 LEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+ F M+ S + P+ TI+ + L G +H Y + F +++ V ++D
Sbjct: 189 IGLFLDMRRSDCLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILD 248
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF--NLMQKGVFKTDE 263
VY++ CI +AR+VF K+ V+W+++I G+ N + EA E F L+ +
Sbjct: 249 VYAKSKCIIYARRVFDSDFKKNEVTWSAMIGGYVENEMIKEAGEVFLQMLVNADMAMVTP 308
Query: 264 VSFTGALTACSHAGLIEDG 282
V+ L C+ G + G
Sbjct: 309 VAIGLILMGCARFGDLSGG 327
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 7/202 (3%)
Query: 86 LLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF----WTALLNGFVKRD 141
LL S+ V+V+ L +YA ++LA VFD + W ++ +V
Sbjct: 25 LLKRSLTLSSSTVLVN--LTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYVSNG 82
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
+ E+AL+ + M SGV P T VL CA +R + G +H +V +F ++ VC
Sbjct: 83 FAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAIEDGKLIHSHVKCSNFAADMYVCT 142
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFK 260
L+D Y++ G ++ A +VF M KR +V+WN++I GF+++ + + + F ++ +
Sbjct: 143 ALVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSDCLS 202
Query: 261 TDEVSFTGALTACSHAGLIEDG 282
+ + G A AG + +G
Sbjct: 203 PNLSTIVGMFPALGRAGALREG 224
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 130/219 (59%), Gaps = 11/219 (5%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
D S NVM++ YAK G M LA +FD + D W +++G+V+ ALE
Sbjct: 178 DLVSWNVMITA-----YAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALEL 232
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---VRVCNTLMDV 206
F MQ G +PD +T++S+L+ CA+ L +G +H + F N V + N L+D+
Sbjct: 233 FEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDM-FSRNGFPVVLGNALIDM 291
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G ++ A +VF M + + +WNSI+ G A++G V E+++ F M KG + DE++F
Sbjct: 292 YAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITF 351
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACSH G+++ G ++F++M+ YRV P I+H+GC+
Sbjct: 352 VAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCM 390
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 31/226 (13%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V W IS + R G L A F +M+ G P +T ++LLS CAD
Sbjct: 211 VSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSS 270
Query: 93 ----FPSNN--VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
F N V++ AL+DMYAK G M A VF MR D W +++ G +
Sbjct: 271 LSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVL 330
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-----LWMHRYVPKQDFKDNVRV 199
E+++ F M V PD +T ++VL C++ + G L H+Y + N++
Sbjct: 331 ESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKY----RVEPNIKH 386
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV 244
++D+ R G ++ A + M + V W +++ V+G +
Sbjct: 387 YGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEI 432
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 87/239 (36%), Gaps = 68/239 (28%)
Query: 112 GRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVM----QISGVEPDYLTI 165
G + A +VFD + D + L+ G +A+ + M GV PD LT
Sbjct: 26 GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTF 85
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS----------------- 208
VL C + G+ +H +V K + + V N L+ +++
Sbjct: 86 PFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAR 145
Query: 209 --------------RFGCIEFARQVFQRMHKRTLVSWNSIIVGFA--------------- 239
R G I AR +F + LVSWN +I +A
Sbjct: 146 EDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQV 205
Query: 240 -----------VNGFVG-----EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
++G+V ALE F MQ+ K D V+ L+AC+ +G ++ G
Sbjct: 206 PERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVG 264
>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
Length = 778
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 152/278 (54%), Gaps = 17/278 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS------GCADF---- 93
V W+S + + +G E L F RM G P+ + V ++ DF
Sbjct: 165 NVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCRVV 224
Query: 94 ----PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEAL 147
++ V A + MYA+ GR+D+A F + D WT+++ +V+ D AL
Sbjct: 225 IDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINAL 284
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
E F+ M++ G+ PD +T++S+++ +N+ + + ++H + + FK+++ + ++D+Y
Sbjct: 285 ELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLY 344
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
+ G +E+AR+ F RM R L+SW+++I G+ ++G EAL F+ M K K D ++F
Sbjct: 345 VKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQM-KASIKPDHIAFV 403
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH GLI +G + F M + + V+P+ EH+ C+
Sbjct: 404 MVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACM 441
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 3/176 (1%)
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
T+L+ YA G + A +F + W ++ F + +L + M G++
Sbjct: 38 TSLIAQYASLGSISHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQ 97
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
T +L C + +G H +V ++ +V V N+LM +Y RFGC +F+RQV
Sbjct: 98 ATNFTFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQV 157
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
F+RM +R +VSW+S++ +A NG E L F M + S A+ AC H
Sbjct: 158 FERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAM-ACIH 212
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 40/235 (17%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGC---ADFP--------------SNNVMVSTALLDMYAK 110
++RM G ++ TF LL C ADF ++V V+ +L+ MY +
Sbjct: 88 YSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGR 147
Query: 111 FGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
FG D + VF+ M R W++++ + +EE L F M G+ P+ +I++
Sbjct: 148 FGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNA 207
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDF---------KDNVRVCNTLMDVYSRFGCIEFARQV 219
+ C +HR DF + V N M +Y+R G I+ AR+
Sbjct: 208 M-AC-----------IHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRF 255
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
F + + LV+W S+I + ALE F M+ D V+ + A S
Sbjct: 256 FYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVS 310
>gi|255572826|ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533264|gb|EEF35017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 687
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 147/290 (50%), Gaps = 30/290 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WT+ IS +G F M L P+ T T+LS C +
Sbjct: 242 ISWTAVISACGENGKAAMGLRFFNEMLLEDIKPNEFTLTTVLSLCCVTLALVLGRLVHSL 301
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK-----RD 141
N+ ++ +++ +Y K G MD A ++F M + W A+++G + +D
Sbjct: 302 SIKLGYQYNLRITNSIMYLYLKCGHMDEAQILFHKMGSTNLVTWNAMISGHAQAMDLAKD 361
Query: 142 YFE------EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195
F EAL F + +G +PD T+ SVL VC+ + LG G +H K +
Sbjct: 362 DFSAQRSGIEALSIFLELNRTGKKPDLFTLSSVLTVCSRLSALGQGEQLHAQTIKSGYLS 421
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
+V V L+++YS+ G I A + F M RTL+SW ++I G A +G +AL+ F M+
Sbjct: 422 DVVVGTALVNMYSKCGSIGKASKAFVEMSTRTLISWTTMITGLAQHGHSEQALQLFEDMR 481
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ ++++F G L AC H+G++++ L YF++M+K YR+ P ++H+GC+
Sbjct: 482 LAGVRPNQITFVGVLAACCHSGMVDEALGYFEMMQKEYRIKPVMDHYGCL 531
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 2/180 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++ V T+L+++YAK G M A +FD + R WTAL+ G+V+ A++ F+ M
Sbjct: 107 KDLAVMTSLVNVYAKCGAMGNARKIFDSLHRRNVVAWTALMTGYVQNSQPNIAIDVFQDM 166
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
SG P T+ LN C+ + ++ +G +H +V K + + N L +YS+ G +
Sbjct: 167 LESGTLPSNYTLGIALNACSAINSIKLGKQLHAFVIKYKLDYDPSIGNALCSLYSKLGSL 226
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ + VFQ + ++ ++SW ++I NG L +FN M K +E + T L+ C
Sbjct: 227 DSSINVFQSIGEKNVISWTAVISACGENGKAAMGLRFFNEMLLEDIKPNEFTLTTVLSLC 286
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 77/148 (52%), Gaps = 6/148 (4%)
Query: 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197
+K F EAL + + + +EP Y + +L C ++ +H ++ K ++
Sbjct: 54 IKPLEFHEALCFIK--EEKKIEPSYY--LPLLQECTKKNSVSEAQVIHAHIIKTGTHKDL 109
Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQK 256
V +L++VY++ G + AR++F +H+R +V+W +++ G+ N A++ F ++++
Sbjct: 110 AVMTSLVNVYAKCGAMGNARKIFDSLHRRNVVAWTALMTGYVQNSQPNIAIDVFQDMLES 169
Query: 257 GVFKTDEVSFTGALTACSHAGLIEDGLQ 284
G ++ + AL ACS I+ G Q
Sbjct: 170 GTLPSN-YTLGIALNACSAINSIKLGKQ 196
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 18/203 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
T + WT+ I+ + G +A F MRL G P+ ITFV +L+ C ++ MV A
Sbjct: 453 TLISWTTMITGLAQHGHSEQALQLFEDMRLAGVRPNQITFVGVLAACC----HSGMVDEA 508
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
L G ++ + + D + L+ FVK +EA + M EP
Sbjct: 509 L-------GYFEMMQKEYRIKPVMDHYGCLIAMFVKLRRLDEAFDIINKMDF---EPSEF 558
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY---SRFGCIEFARQVF 220
++ C N+ +G + + K KD TL+++Y R+ + R++
Sbjct: 559 IWSILIAGCRNLGKQELGFYAAEQLLKLKLKD-TETYVTLLNMYISAKRWQDVSRVRKLM 617
Query: 221 QRMHKRTLVSWNSIIVGFAVNGF 243
+ W+ I + ++ F
Sbjct: 618 KEEKLGKFNDWSWITIKEKIHSF 640
>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 146/281 (51%), Gaps = 22/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSNNVM--- 99
V W + I+ + + G A F +++L NP+ T V LL A D + +
Sbjct: 156 VTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGK 215
Query: 100 -----------VSTALLDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYFE 144
V TAL+DMYAK G + A +F GC W ++ G++ +
Sbjct: 216 IIKCGFESECHVKTALIDMYAKCGSLSGAEFLFH-RTGCRKDEVSWNVMIAGYMHSGHAI 274
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+A F M++ ++P+ +TI++VL A++ L G+ +H YV + F+ V N L+
Sbjct: 275 DAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLHAYVIRMGFQSKTPVGNCLI 334
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G ++ + ++F M + VSWN ++ G+AV+G A+E F+ MQ + D
Sbjct: 335 DMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSF 394
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SF L+AC HAGLI +G + FD M K +++ P +EH+ C+
Sbjct: 395 SFINVLSACRHAGLIGEGRKIFDSMSKQHQLEPDLEHYACM 435
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 111/209 (53%), Gaps = 5/209 (2%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
++V V+T ++ MYA+ G +D A +F ++G D W+A++ FV+ Y +EAL FR M
Sbjct: 21 SDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQSGYPQEALSLFRSM 80
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q G++ + + ++S L CA V +L +G MH K + ++ V L+ +Y++ G
Sbjct: 81 QNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYAKCGFF 140
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A +F RM + +V+WN++I G+A G ALE F+ +Q + + G L A
Sbjct: 141 ALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAF 200
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
+ L+ D Q I KI + + E H
Sbjct: 201 A---LLNDLDQGSCIHGKIIKCGFESECH 226
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 119/258 (46%), Gaps = 20/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W++ I+ +SG EA F M+ G + + ++ L CA+ S
Sbjct: 55 VAWSAIIAAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCC 114
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++ V TAL+ MYAK G LA +F+ M D W A++NG+ + A
Sbjct: 115 AVKANVDLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPA 174
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE F +Q+S + P+ T++ +L A + L G +H + K F+ V L+D+
Sbjct: 175 LEMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDM 234
Query: 207 YSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
Y++ G + A +F R ++ VSWN +I G+ +G +A F M+ + + V+
Sbjct: 235 YAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVT 294
Query: 266 FTGALTACSHAGLIEDGL 283
L A +H + G+
Sbjct: 295 IVTVLPAVAHLSALRAGM 312
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 60/108 (55%)
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+R LG G +H + +Q +V V +M +Y+R G ++ A+Q+FQ + R LV+W++I
Sbjct: 1 MRALGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAI 60
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
I F +G+ EAL F MQ + ++V +L AC+ ++ G
Sbjct: 61 IAAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLG 108
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 143/267 (53%), Gaps = 26/267 (9%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVST 102
+ V W++ IS R G I AA E L+ +P D S NVM++
Sbjct: 179 EDAVAWSAMISGFARRGDI-GAARE-----LFDESP-----------VKDLVSWNVMITA 221
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
YAK G M A +FD D W A+++G+V+ ++A+E F MQ G +P
Sbjct: 222 -----YAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKP 276
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ--DFKDNVRVCNTLMDVYSRFGCIEFARQ 218
D +T++S+L+ CA+ L G +H ++ + + N L+D+Y++ G + A +
Sbjct: 277 DTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALE 336
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF M + + +WNSII G A++G E++ F M +G K DE++F L ACSH G+
Sbjct: 337 VFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGM 396
Query: 279 IEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++ G +YF +M++ YR+ P I+H+GC+
Sbjct: 397 VDKGHEYFSLMQQRYRIEPNIKHYGCM 423
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 13/180 (7%)
Query: 117 ATVVFDVMRGCD--FWTALLNGFVKRDYFEEALE-YFRVMQISG------VEPDYLTIIS 167
A +VFD + D + L+ G D +A+ Y R+ + S + PD T
Sbjct: 61 ARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPF 120
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
VL CA + G +H +V K + + V N L+ +++ G + A +F +
Sbjct: 121 VLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEARED 180
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
V+W+++I GFA G +G A E F+ + V D VS+ +TA + G + + FD
Sbjct: 181 AVAWSAMISGFARRGDIGAARELFD--ESPV--KDLVSWNVMITAYAKLGDMAPARELFD 236
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 129/212 (60%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+V++ T L+ YA G ++ A VF+ M D W ++++ + + EEAL+ + M
Sbjct: 141 QDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQM 200
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+IS V D T++S+L+ CA+V L +G+ MHR+ ++ +N+ V N L+D+Y++ G +
Sbjct: 201 RISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSL 260
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A +F M KR + +WNS+IVG+ V+G EA+ +F M + + ++F G L C
Sbjct: 261 ASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGC 320
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH GL+++G+QYF +M + + P I+H+GC+
Sbjct: 321 SHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCM 352
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD--VYSRFGCIEFARQVFQ 221
I+S+L C ++R L +H ++ ++ N + L++ S G + +A+ VF
Sbjct: 7 AILSLLQGCNSMRKLHK---IHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFH 63
Query: 222 RMHKRTLVSWNSIIVGF--AVNGFVGEALEYFNLMQKGVF-KTDEVSFTGALTACSHA 276
R+H +WNS+I GF + + +A+ ++N M + D +F+ L AC A
Sbjct: 64 RIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEA 121
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 125/211 (59%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V+ +++ AK G +D A +FD M R W ++++GFV+ F++ALE FR MQ
Sbjct: 191 DVVAWNSIIMGLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQ 250
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V+PD T++S+LN CA + G W+H+Y+ + F+ N V L+D+Y + GC E
Sbjct: 251 ERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFE 310
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
+VF+ + L WNS+I+G A NG A++ F +++ + D VSF G LTAC+
Sbjct: 311 EGLKVFECAPTKQLSCWNSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVLTACA 370
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H+G + ++F +M++ Y + P I+H+ C+
Sbjct: 371 HSGEVHKAGEFFRLMREKYMIEPSIKHYTCM 401
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 116/267 (43%), Gaps = 22/267 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V W S IS R+G +A F M+ P T V+LL+ CA ++
Sbjct: 224 VSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHKY 283
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N +V TAL+DMY K G + VF+ + W +++ G E A
Sbjct: 284 IVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLANNGCEERA 343
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTL-GIGLWMHRYVPKQDFKDNVRVCNTLMD 205
++ F ++ +G+EPD ++ I VL CA+ + G + K + +++ +++
Sbjct: 344 MDLFLELERTGLEPDSVSFIGVLTACAHSGEVHKAGEFFRLMREKYMIEPSIKHYTCMVN 403
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
V G ++ A + ++M + + W+S++ NG V A N + K + +
Sbjct: 404 VLGGAGLLDEAEALIKKMPVEGDTIIWSSLLAACRKNGNVEMAKRAANCL-KNLDPDETC 462
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKK 291
+ A + GL E+ ++ +MK+
Sbjct: 463 GYVLMSNAYASYGLFEEAVEQRLLMKE 489
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 6/164 (3%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISG--VEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
W ++ GF + + E A+ F M S V+P LT SV A++ G +H
Sbjct: 92 WNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGR 151
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
V K+ +D+ + NT++ +Y GC+ A ++F M +V+WNSII+G A G + +A
Sbjct: 152 VIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQA 211
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+ F+ M + + VS+ ++ G +D L+ F M++
Sbjct: 212 QKLFDEMP----QRNGVSWNSMISGFVRNGRFKDALEMFREMQE 251
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 154/278 (55%), Gaps = 20/278 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------D 92
V W++ + + +G + A F RM G N +T+ ++++G A +
Sbjct: 194 VSWSTMVGGYAAAGELDVAREMFDRMPAIGRNV--VTWNSMVTGFARHGLLPLARKMFDE 251
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P N++ A+L Y+ MD A +FDVM D WT +++G+ + +++ LE F
Sbjct: 252 MPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELF 311
Query: 151 RVMQI-SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD--FKDNVRVCNTLMDVY 207
R MQ S V+P+ +T++SVL+ CAN+ L G W+H ++ K + + L+D+Y
Sbjct: 312 RAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMY 371
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
++ G + A ++F + ++ + +WN++I A+NG ++++ F M++ K ++++F
Sbjct: 372 AKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFV 431
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G LTACSH GL+++G + F M V P+++H+GC+
Sbjct: 432 GVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCM 469
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 48/212 (22%)
Query: 88 SGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+G AD S N ++ Y K G M+ A VFD M R W+ ++ G+ +
Sbjct: 157 AGVADVVSWNTVIGG-----YVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDV 211
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A E F M G NV N+++
Sbjct: 212 AREMFDRMPAIG-------------------------------------RNVVTWNSMVT 234
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
++R G + AR++F M R LVSWN+++ G++VN + A E F++M + D VS
Sbjct: 235 GFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMP----EKDVVS 290
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSP 297
+T ++ + AG +D L+ F M+ V P
Sbjct: 291 WTCMISGYAQAGRYQDTLELFRAMQTESNVQP 322
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 154/278 (55%), Gaps = 20/278 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------D 92
V W++ + + +G + A F RM G N +T+ ++++G A +
Sbjct: 56 VSWSTMVGGYAAAGELDVAREMFDRMPAIGRNV--VTWNSMVTGFARHGLLPLARKMFDE 113
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P N++ A+L Y+ MD A +FDVM D WT +++G+ + +++ LE F
Sbjct: 114 MPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELF 173
Query: 151 RVMQI-SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD--FKDNVRVCNTLMDVY 207
R MQ S V+P+ +T++SVL+ CAN+ L G W+H ++ K + + L+D+Y
Sbjct: 174 RAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMY 233
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
++ G + A ++F + ++ + +WN++I A+NG ++++ F M++ K ++++F
Sbjct: 234 AKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFV 293
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G LTACSH GL+++G + F M V P+++H+GC+
Sbjct: 294 GVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCM 331
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 48/212 (22%)
Query: 88 SGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+G AD S N ++ Y K G M+ A VFD M R W+ ++ G+ +
Sbjct: 19 AGVADVVSWNTVIGG-----YVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDV 73
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A E F M G NV N+++
Sbjct: 74 AREMFDRMPAIG-------------------------------------RNVVTWNSMVT 96
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
++R G + AR++F M R LVSWN+++ G++VN + A E F++M + D VS
Sbjct: 97 GFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMP----EKDVVS 152
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSP 297
+T ++ + AG +D L+ F M+ V P
Sbjct: 153 WTCMISGYAQAGRYQDTLELFRAMQTESNVQP 184
>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
Length = 687
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 125/217 (57%), Gaps = 7/217 (3%)
Query: 91 ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
AD + N +LL MYAK G +D A +FD M D ++AL++G+V+ EEA
Sbjct: 258 ADLTAGN-----SLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFL 312
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F+ MQ VEPD T++S++ C+++ L G H V + +CN L+D+Y+
Sbjct: 313 VFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYA 372
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G I+ +RQVF M R +VSWN++I G+ ++G EA F M F D V+F
Sbjct: 373 KCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFIC 432
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH+GL+ +G +F +M Y ++P++EH+ C+
Sbjct: 433 LLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 469
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 7/193 (3%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
++ V++ TALLDMYAK G + A VFD M R W+AL+ GFV +A F+
Sbjct: 155 TDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKA 214
Query: 153 MQISGV---EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
M G+ P +I S L CA++ L +G +H + K ++ N+L+ +Y++
Sbjct: 215 MLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK 272
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G I+ A +F M + VS+++++ G+ NG EA F MQ + D +
Sbjct: 273 AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSL 332
Query: 270 LTACSHAGLIEDG 282
+ ACSH ++ G
Sbjct: 333 IPACSHLAALQHG 345
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 15/210 (7%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
++ VSTALLDMY K + A +F M D W A+L G+ + A+ + MQ
Sbjct: 44 DLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 103
Query: 155 IS--GVEPDYLTIISVLNVCANVRTLGIGLWMHRYV----------PKQDFKDNVRVCNT 202
+ + P+ T++++L + A L G +H Y K D V +
Sbjct: 104 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTA 163
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKT 261
L+D+Y++ G + +AR+VF M R V+W+++I GF + + +A F M +G+
Sbjct: 164 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 223
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
S AL AC+ + G Q ++ K
Sbjct: 224 SPTSIASALRACASLDHLRMGEQLHALLAK 253
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 21/216 (9%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----- 95
+ TV +++ +S + ++G EA L F +M+ P T V+L+ C+ +
Sbjct: 287 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 346
Query: 96 ------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
+ + AL+DMYAK GR+DL+ VF++M D W ++ G+
Sbjct: 347 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHG 406
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVC 200
+EA F M G PD +T I +L+ C++ + G W H +
Sbjct: 407 LGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHY 466
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVS-WNSII 235
++D+ SR G ++ A + Q M R V W +++
Sbjct: 467 ICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 502
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%)
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
V P+ T L C+ + G +HR+ + ++ V L+D+Y + C+ A
Sbjct: 6 VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
+F M R LV+WN+++ G+A +G A+ + MQ
Sbjct: 66 HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 103
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 130/217 (59%), Gaps = 8/217 (3%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
D S NVM++ YAK G M+ A +FD + D W A++ G+V ++ALE
Sbjct: 174 DLVSWNVMITG-----YAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEM 228
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYS 208
F M+ G PD +T++S+L+ C ++ L G +H + + F+D +V + N L+D+Y+
Sbjct: 229 FEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYA 288
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G I A +VFQ M ++ + +WNS++ G A +G +++ F M+K + DE++F G
Sbjct: 289 KCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVG 348
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACSHAG +E+G QYFD+M+ Y + P I H+GC+
Sbjct: 349 VLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCM 385
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 22/221 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V W + I+ + G +A F MR G P +T ++LLS C D
Sbjct: 207 VTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCC 266
Query: 93 -----FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
F +V++ AL+DMYAK G + A VF MR D W ++L G + E+
Sbjct: 267 ISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEK 326
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLM 204
++ F M+ + PD +T + VL C++ + G + + + + N+R ++
Sbjct: 327 SIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMV 386
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV 244
D+ R G + A M + + W +++ ++G V
Sbjct: 387 DLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNV 427
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W ++ G + A+ + M+ V PD T VL C + + +G +H V
Sbjct: 46 WNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVF 105
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
+ F+ N V NTL+ ++ G + AR +F KR +V+W+++ G+A G +G A +
Sbjct: 106 RLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQ 165
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
F+ M D VS+ +T + G +E + FD + K
Sbjct: 166 LFDEMP----VKDLVSWNVMITGYAKRGEMESARKLFDEVPK 203
>gi|357167426|ref|XP_003581157.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like, partial [Brachypodium distachyon]
Length = 357
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 126/216 (58%), Gaps = 2/216 (0%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ P+ +V+ AL+D Y K GR+ LAT F M R W ++ G K +EEA+
Sbjct: 38 EMPAPDVVSYNALMDGYIKAGRLGLATKEFMRMPQRDAVSWGTVVAGCAKAGRWEEAVLL 97
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F M+ G PD + + +VL+ CA + L G +H YV + + NV +C L+D+Y++
Sbjct: 98 FDRMRWEGFRPDDIVLAAVLSCCAQLGALEKGREVHEYVRQSRPRPNVFLCTGLVDLYAK 157
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
GC+E AR+VF +R + +WN++IVG A++G L+YF+ M F+ D V+F G
Sbjct: 158 CGCVEIAREVFDTCPERNVFTWNALIVGLAMHGHGTVTLKYFDRMLAEGFRPDGVTFLGV 217
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L CSHAGLI+ + F M+ Y VS +++H+GC+
Sbjct: 218 LIGCSHAGLIDMAKRIFFEMEMKYGVSRELKHYGCM 253
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 98/228 (42%), Gaps = 29/228 (12%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF----------- 93
V W + ++ ++G EA L F RMR G P I +LS CA
Sbjct: 75 AVSWGTVVAGCAKAGRWEEAVLLFDRMRWEGFRPDDIVLAAVLSCCAQLGALEKGREVHE 134
Query: 94 ------PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
P NV + T L+D+YAK G +++A VFD R W AL+ G +
Sbjct: 135 YVRQSRPRPNVFLCTGLVDLYAKCGCVEIAREVFDTCPERNVFTWNALIVGLAMHGHGTV 194
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV----RVCN 201
L+YF M G PD +T + VL C++ + + R + + K V +
Sbjct: 195 TLKYFDRMLAEGFRPDGVTFLGVLIGCSHAGLIDMA---KRIFFEMEMKYGVSRELKHYG 251
Query: 202 TLMDVYSRFGCIEFARQVFQR--MHKRTLVSWNSIIVGFAVNGFVGEA 247
+ D+ R G IE A ++ ++ M T V W I+ G +G V EA
Sbjct: 252 CMADLLGRAGLIEEAMEMVKKMPMEGDTYV-WGGILAGCRKHGNVEEA 298
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V N L+ +Y++ + A +VF M +VS+N+++ G+ G +G A + F M
Sbjct: 15 VGNALVSLYAKNALPDSACRVFDEMPAPDVVSYNALMDGYIKAGRLGLATKEFMRMP--- 71
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
+ D VS+ + C+ AG E+ + FD M+
Sbjct: 72 -QRDAVSWGTVVAGCAKAGRWEEAVLLFDRMR 102
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 125/205 (60%), Gaps = 2/205 (0%)
Query: 103 ALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
+++D YA+ GRMD A +F+ M R W+ +++G V+ +EALE+F+ M G+ P
Sbjct: 250 SMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRP 309
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D + + ++ CA + L G W+H Y+ K+ +V V L+D+Y + G ++ A +F
Sbjct: 310 DRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIF 369
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
+ M +R++V+WN +IVG +G+ +A+ F+ M+ D++S LTAC+HAGL+
Sbjct: 370 ESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVS 429
Query: 281 DGLQYFDIMKKIYRVSPQIEHHGCI 305
+GL+ F MKK + + P++EH+G +
Sbjct: 430 EGLEIFHRMKKDFGIDPKVEHYGAL 454
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 116/273 (42%), Gaps = 44/273 (16%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDM 107
W ++I H G A L F RMR G P TF +L C P A L +
Sbjct: 82 WNTAIRLHA-PGRPRAALLYFARMRSCGVRPDAYTFPAVLKACGCAPG-----CRAGLLV 135
Query: 108 YAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
+A+ R L +F V F+ +L+ R F+EA GV D ++ S
Sbjct: 136 HAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEA---------GGVSRDLVSWNS 186
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDF-----------------KDNVR-----------V 199
++ +G+ + +P++D D R V
Sbjct: 187 MVAGYVGCGEMGLAQELFDEMPQRDAFSWGALIDGYGKQGGAGVDRARELFDQMTERDLV 246
Query: 200 C-NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
C N+++D Y+R G ++ AR +F+ M +R ++SW+ +I G G EALE+F M +
Sbjct: 247 CWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCG 306
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+ D V+ GA++AC+ G +E G ++K
Sbjct: 307 IRPDRVAAVGAVSACAQLGALEQGRWLHSYLEK 339
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 25/215 (11%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
+ W+ I H R G EA F M G P + V +S CA +
Sbjct: 276 VISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDRVAAVGAVSACAQLGALEQGRWLHS 335
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
++V+V TAL+DMY K GRMDLA ++F+ M R W ++ G Y +
Sbjct: 336 YLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLD 395
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-HRYVPKQDFKDNVRV--CNT 202
A+ F M+ V D L+++++L C + + GL + HR K+DF + +V
Sbjct: 396 AVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEGLEIFHRM--KKDFGIDPKVEHYGA 453
Query: 203 LMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIV 236
L+D+ R G ++ AR + M + T W S++
Sbjct: 454 LVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLA 488
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 151/280 (53%), Gaps = 22/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTR-MRLYGTNPSHITFVTLLSGCADFPS--------- 95
V WT I+ + + G + + ALE M+ P+ ITF ++L GC +
Sbjct: 215 VTWTLLIAGYAQQGQV-DVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHR 273
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ V +L+ MY K G ++ A +F + D WTA++ G+ + + +E
Sbjct: 274 YIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDE 333
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ FR MQ G++PD +T SVL C++ L G +H+ + + +V + + L+
Sbjct: 334 AINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVS 393
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG-FAVNGFVGEALEYFNLMQKGVFKTDEV 264
+Y++ G ++ A VF +M +R +V+W +II G A +G EALEYF+ M+K K D+V
Sbjct: 394 MYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKV 453
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
+FT L+AC+H GL+E+G ++F M Y + P +EH+ C
Sbjct: 454 TFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSC 493
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 131/259 (50%), Gaps = 25/259 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVM------ 99
V WT+ I LEA + M+L G P +TFV+LL+ F + ++
Sbjct: 114 VSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNA---FTNPELLQLGQKV 170
Query: 100 --------------VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
V T+L+ MYAK G + A V+FD + + WT L+ G+ ++
Sbjct: 171 HMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQV 230
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
+ ALE MQ + V P+ +T S+L C L G +HRY+ + + + V N+L
Sbjct: 231 DVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSL 290
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+ +Y + G +E AR++F + R +V+W +++ G+A GF EA+ F MQ+ K D+
Sbjct: 291 ITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDK 350
Query: 264 VSFTGALTACSHAGLIEDG 282
++FT LT+CS +++G
Sbjct: 351 MTFTSVLTSCSSPAFLQEG 369
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 127/269 (47%), Gaps = 26/269 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
T+ + +S C++G + EA M L GT F LL CA S
Sbjct: 12 TLANSRDVSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHA 71
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N + LL MYAK G + A VFD +R + WTA++ FV + E
Sbjct: 72 AILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLE 131
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A + + M+++G +PD +T +S+LN N L +G +H + + + RV +L+
Sbjct: 132 AFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVG 191
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G I AR +F R+ ++ +V+W +I G+A G V ALE MQ+ ++++
Sbjct: 192 MYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKIT 251
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYR 294
F L C+ +E G KK++R
Sbjct: 252 FASILQGCTTPAALEHG-------KKVHR 273
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
K +EAL M + G +L CA +R+L G +H + K + N
Sbjct: 24 KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
+ NTL+ +Y++ G + AR+VF + R +VSW ++I F EA + + M+
Sbjct: 84 LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQ-YFDIMKKIYRVSPQI 299
K D+V+F L A ++ L++ G + + +I++ + P++
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRV 185
>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Brachypodium distachyon]
Length = 608
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 145/281 (51%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLLSGCADFP---------- 94
V W + + + R+G + A F M G P+ +T +L+ C D
Sbjct: 183 VSWNAMMKAYERAGMAADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLEE 242
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+V +AL+ MY K G M A VFD + D W A++ G+ + +E
Sbjct: 243 WVRSAEIEVGSLVGSALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKE 302
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F M+ G PD +T++ VL+ CA V L +G + Y + NV V L+D
Sbjct: 303 AIALFHSMRQEGASPDKITLVGVLSACAAVGALELGTELDAYASHRGLYGNVYVGTALVD 362
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEV 264
+YS+ G ++ A QVF ++ + +WN++I G A NG EA+ F +M+ + + D++
Sbjct: 363 MYSKCGDLDKAVQVFGKLPCKNEATWNALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDI 422
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L+AC HAGL++DG ++F+ + +++ P+IEH+ C+
Sbjct: 423 TFIGVLSACVHAGLLKDGRRWFNSLTSEFQIIPKIEHYSCM 463
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL F M + + PD T+ +L A H + + + + ++L+
Sbjct: 100 ALRLFLRMLRAALRPDAYTLPFLLLAAARAPEPPFARSAHALLCRLGLQAHDHTVHSLVT 159
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEV 264
+YS G AR+VF + +R +VSWN+++ + G + F +++ +G +EV
Sbjct: 160 MYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYERAGMAADVARMFRDMIDEGAVAPNEV 219
Query: 265 SFTGALTACSHAG 277
+ L AC AG
Sbjct: 220 TVAVVLAACRDAG 232
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 148/281 (52%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTN-PSHITFVTLLSGCADFP---------- 94
V W + + + R G E M G P+ +T +L+ C D
Sbjct: 195 VSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEE 254
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ +V +AL+ MY K G + A VFD + D W A++ G+ + E
Sbjct: 255 WSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNE 314
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F M+ +GV PD +T+ VL+ C+ V L +G + Y + +NV V L+D
Sbjct: 315 AISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVD 374
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEV 264
+Y++ G ++ A +VF++M + + SWN++I G A NG EA+++F LM+ + K D++
Sbjct: 375 MYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDI 434
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L+AC HAGL++DG ++F+ + +++ P+IEH+ C+
Sbjct: 435 TFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEHYSCM 475
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF---AVN 241
H + K D + ++L+ +YS AR+VF + R +VSWN+++ + +N
Sbjct: 151 HALLEKIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMN 210
Query: 242 GFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
G VG L ++++ G + V+ L AC G
Sbjct: 211 GEVGRMLR--DMVKDGAVVPNAVTLAVVLAACRDEG 244
>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 882
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 149/280 (53%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS---GCADFP------S 95
TV W S IS + +SG ++EA F M + HIT++ L+S AD S
Sbjct: 373 TVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHS 432
Query: 96 NNVM--------VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
N + VS AL+DMYAK G + + +F+ M D W +++ V+ F
Sbjct: 433 NGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFAT 492
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
L+ M+ + V PD T + L +CA++ +G +H + + ++ +++ N L++
Sbjct: 493 GLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIE 552
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ GC+E + +VF+RM +R +V+W +I + + G +ALE F M+K D V
Sbjct: 553 MYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVV 612
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F + ACSH+GL+E GL F+ MK Y++ P IEH+ C+
Sbjct: 613 FIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACV 652
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 124/270 (45%), Gaps = 24/270 (8%)
Query: 27 KRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL 86
+ P S+ S W S I ++G +A + ++R +P TF ++
Sbjct: 53 RAPASSLSVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSV 112
Query: 87 LSGCADFP-----------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF 129
+ CA +++ V AL+DMY++ G + A VFD M D
Sbjct: 113 IKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDL 172
Query: 130 --WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
W +L++G+ Y+EEALE + ++ S + PD T+ SVL AN+ + G +H +
Sbjct: 173 VSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGF 232
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
K V N L+ +Y +F AR+VF M R V++N++I G+ V E+
Sbjct: 233 TLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEES 292
Query: 248 LEYF--NLMQKGVFKTDEVSFTGALTACSH 275
++ F NL Q FK D ++ T L AC H
Sbjct: 293 VKMFLENLDQ---FKPDILTVTSVLCACGH 319
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 100/185 (54%), Gaps = 3/185 (1%)
Query: 101 STALLDMYAKFGRMDLATVVF---DVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
S L+D Y+ F + VF + W +++ F K +F +ALE++ ++ S
Sbjct: 42 SGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESK 101
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
V PD T SV+ CA + +G +++ + + F+ ++ V N L+D+YSR G + AR
Sbjct: 102 VSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRAR 161
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
QVF M R LVSWNS+I G++ +G+ EALE ++ ++ D + + L A ++
Sbjct: 162 QVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLL 221
Query: 278 LIEDG 282
+++ G
Sbjct: 222 VVKQG 226
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 20/240 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF------------ 93
V W S IS + G EA + +R P T ++L A+
Sbjct: 173 VSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGF 232
Query: 94 ----PSNNV-MVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEA 146
N+V +V+ LL MY KF R A VFD V+R + ++ G++K + EE+
Sbjct: 233 TLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEES 292
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
++ F + + +PD LT+ SVL C ++R L + +++ Y+ + F V N L+DV
Sbjct: 293 VKMF-LENLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDV 351
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G + AR VF M + VSWNSII G+ +G + EA++ F +M + D +++
Sbjct: 352 YAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITY 411
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 148/281 (52%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTN-PSHITFVTLLSGCADFP---------- 94
V W + + + R G E M G P+ +T +L+ C D
Sbjct: 195 VSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEE 254
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ +V +AL+ MY K G + A VFD + D W A++ G+ + E
Sbjct: 255 WSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNE 314
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F M+ +GV PD +T+ VL+ C+ V L +G + Y + +NV V L+D
Sbjct: 315 AISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVD 374
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEV 264
+Y++ G ++ A +VF++M + + SWN++I G A NG EA+++F LM+ + K D++
Sbjct: 375 MYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDI 434
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L+AC HAGL++DG ++F+ + +++ P+IEH+ C+
Sbjct: 435 TFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEHYSCM 475
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF---AVN 241
H + K D + ++L+ +YS AR+VF + R +VSWN+++ + +N
Sbjct: 151 HALLEKIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMN 210
Query: 242 GFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
G VG L ++++ G + V+ L AC G
Sbjct: 211 GEVGRMLR--DMVKDGAVVPNAVTLAVVLAACRDEG 244
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 146/279 (52%), Gaps = 22/279 (7%)
Query: 48 WTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPS----------- 95
W + IS + RSG E ALE F +M H T+ ++ + A
Sbjct: 343 WNAMISGYLRSG-FNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARA 401
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
N V +S A+ + YAK G ++ VF+ M D WT+L+ + + +++A
Sbjct: 402 IKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKA 461
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+E F M+ G+ P+ T SVL CAN+ L G +H + K + + + L+D+
Sbjct: 462 IEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDM 521
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ GC+ A++VF R+ VSW +II G A +G V +AL+ F M + + + V+F
Sbjct: 522 YAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTF 581
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACSH GL+E+GLQYF +MKK Y + P++EH+ CI
Sbjct: 582 LCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACI 620
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 112/272 (41%), Gaps = 32/272 (11%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
T WT I+ +G L+ F M+ G P + +L C S
Sbjct: 136 TFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHA 195
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
++ VSTALL+MYAK ++ + VF+ M + W A++ GF D + +
Sbjct: 196 QIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLD 255
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A + F M GV PD T I V +R + + Y + N V L+D
Sbjct: 256 AFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALID 315
Query: 206 VYSRFGCIEFARQVFQR--MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+ S+ G ++ AR +F + R WN++I G+ +GF +ALE F M + D
Sbjct: 316 MNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDH 375
Query: 264 VSFTGALTACS-----------HAGLIEDGLQ 284
++ A + HA I+ GL+
Sbjct: 376 YTYCSVFNAIAALKCLSLGKKVHARAIKSGLE 407
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 7/177 (3%)
Query: 108 YAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
Y+K +D A +FD M R WT L+ G + F + E+F MQ G+ PD
Sbjct: 115 YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAY 174
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
+L +C + ++ +G +H + + F + V L+++Y++ IE + +VF M +
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE 234
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTACSHAGLIED 281
+VSWN++I GF N +A + F +M +GV D +F G A G++ D
Sbjct: 235 VNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGV-TPDAQTFIGVAKAI---GMLRD 287
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 123/271 (45%), Gaps = 30/271 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF------------ 93
+ WTS ++ + + +A F+ MR G P+ TF ++L CA+
Sbjct: 443 ISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGI 502
Query: 94 -----PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ + +AL+DMYAK G + A VF+ + D WTA++ G + ++A
Sbjct: 503 ICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDA 562
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLMD 205
L+ FR M GVEP+ +T + VL C++ + GL + + K + ++D
Sbjct: 563 LQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVD 622
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV--GEALEYFNLMQKGVFKTD 262
+ SR G + A + RM + + W +++ V+G V GE QK +
Sbjct: 623 LLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAA-----QKILSFKA 677
Query: 263 EVSFTGALTACSH--AGLIEDGLQYFDIMKK 291
E S T L + ++ +G +DGL +MK+
Sbjct: 678 ENSATYVLLSNTYIESGSYKDGLSLRHVMKE 708
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDN--VRVCNTLMDVYSRFGCIEFARQVFQR 222
++ +L C + R L +H ++ K F ++ + + N + YS+ I+ A ++F +
Sbjct: 71 LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFTGALTACSHAGLIED 281
M +R SW +I G A NG + E+F MQ +G+F D+ +++G L C IE
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIF-PDQFAYSGILQICIGLDSIEL 189
Query: 282 G 282
G
Sbjct: 190 G 190
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
TV WT+ I+ H + G + +A F RM G P+ +TF+ +L C S+ +V L
Sbjct: 543 TVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFAC----SHGGLVEEGL 598
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
Y K L + ++ + + +++ + + +A+E+ M VEP+ +
Sbjct: 599 --QYFK-----LMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMP---VEPNEMV 648
Query: 165 IISVLNVC 172
++L C
Sbjct: 649 WQTLLGAC 656
>gi|297842491|ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334968|gb|EFH65386.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 466
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 123/209 (58%), Gaps = 4/209 (1%)
Query: 101 STALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
+ + +Y K G ++ A VFD R W A++ G EA+E F M+ SG
Sbjct: 154 ESGFITLYCKAGELENARNVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFMEMRRSGF 213
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYV--PKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
EPD T++SV + C + L + +H+ V K + K +V + N+L+D+Y + G ++FA
Sbjct: 214 EPDDFTMVSVTSACGGLGDLNLAFQLHKCVLQAKTEEKSDVMMMNSLIDMYGKCGRMDFA 273
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
QVF+ M +R +VSW+S+I G+A NG EALE F M++ + ++++F G L+AC H
Sbjct: 274 IQVFEEMPQRNVVSWSSMITGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHG 333
Query: 277 GLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
GL+E+G YF +MK + + P + H+GCI
Sbjct: 334 GLVEEGKAYFAMMKSEFNLEPGLSHYGCI 362
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 84/188 (44%), Gaps = 17/188 (9%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
V W+S I+ + +G LEA F +MR +G P+ ITFV +LS C V
Sbjct: 284 NVVSWSSMITGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSAC---------VHGG 334
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
L++ + M + F++ G + +++ + +EA +V++ ++P+ +
Sbjct: 335 LVEEGKAYFAMMKSE--FNLEPGLSHYGCIVDLLSRDGQLKEAK---KVVEEMPMKPNVM 389
Query: 164 TIISVLNVCANVRTLGIGLWMHRY-VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
++ C + + W+ Y V + + D V V L +VY+ G + +V +
Sbjct: 390 VWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGVYV--VLANVYALKGMWKDVERVRKV 447
Query: 223 MHKRTLVS 230
M ++ +
Sbjct: 448 MKEKKVAK 455
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 128/217 (58%), Gaps = 8/217 (3%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
D S NVM++ YAK G M+ A +FD + D W A++ G+V +EALE
Sbjct: 209 DLVSWNVMITA-----YAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEM 263
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYS 208
F M+ G PD +T++S+L+ A++ L IG +HR + D +V + N L+D+Y+
Sbjct: 264 FDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYA 323
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G I A +VFQ M K+ SWNSII G A++G E++ F M + K +E++F
Sbjct: 324 KCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVA 383
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACSHAG + +G YF++MK ++++ P I+H+GC+
Sbjct: 384 VLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCM 420
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 6/182 (3%)
Query: 112 GRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
G MD A +F + D W ++ G + A+ + M+ GV PD T VL
Sbjct: 61 GTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVL 120
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
C + + +G +H V K F+ N V NTL+ ++ G + AR +F KR +V
Sbjct: 121 KACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVV 180
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
W+++ G+A G + A + F+ M D VS+ +TA + G +E + FD +
Sbjct: 181 PWSALTAGYARRGKLDVARQLFDEMP----MKDLVSWNVMITAYAKHGEMEKARKLFDEV 236
Query: 290 KK 291
K
Sbjct: 237 PK 238
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 142/281 (50%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC---ADFPS----- 95
+ V WT+ S + +G EA F +M G P V +LS C D S
Sbjct: 176 SVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIV 235
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
N V T L+++YAK G+M+ A VFD M D W+ ++ G+ + +
Sbjct: 236 KHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPK 295
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E +E+F M ++PD +I+ L+ CA++ L +G W + + +F N+ + N L+
Sbjct: 296 EGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALI 355
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G + +VF+ M ++ +V N+ I G A NG V + F +K D
Sbjct: 356 DMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGS 415
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L C HAGLI+DGL++F+ + +Y + +EH+GC+
Sbjct: 416 TFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCM 456
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 19/234 (8%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCA---------DFPS--------NNVMVSTALLDMYAK 110
F +R +G N TF +L C D S ++V T+LL +Y+
Sbjct: 99 FLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSG 158
Query: 111 FGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
GR++ A VF+ + R WTAL +G+ EA++ F+ M GV PD I+ V
Sbjct: 159 SGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQV 218
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ C +V L G W+ +++ + + + N V TL+++Y++ G +E AR VF M ++ +
Sbjct: 219 LSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDI 278
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
V+W+++I G+A N F E +E+F M + K D+ S G L++C+ G ++ G
Sbjct: 279 VTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
+ L+NGFV F E L+ F ++ G+ T VL C +G+ +H V
Sbjct: 78 LYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLV 137
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K F +V +L+ +YS G + A +VF+ + +R++V+W ++ G+ G EA+
Sbjct: 138 VKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAI 197
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ F M + + D L+AC H G ++ G
Sbjct: 198 DLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSG 231
>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
Length = 698
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 125/217 (57%), Gaps = 7/217 (3%)
Query: 91 ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
AD + N +LL MYAK G +D A +FD M D ++AL++G+V+ EEA
Sbjct: 258 ADLTAGN-----SLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFL 312
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F+ MQ VEPD T++S++ C+++ L G H V + +CN L+D+Y+
Sbjct: 313 VFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYA 372
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G I+ +RQVF M R +VSWN++I G+ ++G EA F M F D V+F
Sbjct: 373 KCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFIC 432
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH+GL+ +G +F +M Y ++P++EH+ C+
Sbjct: 433 LLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 469
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 7/193 (3%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
++ V++ TALLDMYAK G + A VFD M R W+AL+ GFV +A F+
Sbjct: 155 TDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKA 214
Query: 153 MQISGV---EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
M G+ P +I S L CA++ L +G +H + K ++ N+L+ +Y++
Sbjct: 215 MLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK 272
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G I+ A +F M + VS+++++ G+ NG EA F MQ + D +
Sbjct: 273 AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSL 332
Query: 270 LTACSHAGLIEDG 282
+ ACSH ++ G
Sbjct: 333 IPACSHLAALQHG 345
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 15/210 (7%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
++ VSTALLDMY K + A +F M D W A+L G+ + A+ + MQ
Sbjct: 44 DLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 103
Query: 155 IS--GVEPDYLTIISVLNVCANVRTLGIGLWMHRYV----------PKQDFKDNVRVCNT 202
+ + P+ T++++L + A L G +H Y K D V +
Sbjct: 104 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTA 163
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKT 261
L+D+Y++ G + +AR+VF M R V+W+++I GF + + +A F M +G+
Sbjct: 164 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 223
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
S AL AC+ + G Q ++ K
Sbjct: 224 SPTSIASALRACASLDHLRMGEQLHALLAK 253
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 21/216 (9%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----- 95
+ TV +++ +S + ++G EA L F +M+ P T V+L+ C+ +
Sbjct: 287 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 346
Query: 96 ------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
+ + AL+DMYAK GR+DL+ VF++M D W ++ G+
Sbjct: 347 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHG 406
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVC 200
+EA F M G PD +T I +L+ C++ + G W H +
Sbjct: 407 LGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHY 466
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVS-WNSII 235
++D+ SR G ++ A + Q M R V W +++
Sbjct: 467 ICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 502
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%)
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
V P+ T L C+ + G +HR+ + ++ V L+D+Y + C+ A
Sbjct: 6 VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
+F M R LV+WN+++ G+A +G A+ + MQ
Sbjct: 66 HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 103
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 146/279 (52%), Gaps = 22/279 (7%)
Query: 48 WTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPS----------- 95
W + IS + RSG E ALE F +M H T+ ++ + A
Sbjct: 343 WNAMISGYLRSG-FNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARA 401
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
N V +S A+ + YAK G ++ VF+ M D WT+L+ + + +++A
Sbjct: 402 IKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKA 461
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+E F M+ G+ P+ T SVL CAN+ L G +H + K + + + L+D+
Sbjct: 462 IEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDM 521
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ GC+ A++VF R+ VSW +II G A +G V +AL+ F M + + + V+F
Sbjct: 522 YAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTF 581
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACSH GL+E+GLQYF +MKK Y + P++EH+ CI
Sbjct: 582 LCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACI 620
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 112/272 (41%), Gaps = 32/272 (11%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
T WT I+ +G L+ F M+ G P + +L C S
Sbjct: 136 TFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHA 195
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
++ VSTALL+MYAK ++ + VF+ M + W A++ GF D + +
Sbjct: 196 QIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLD 255
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A + F M GV PD T I V +R + + Y + N V L+D
Sbjct: 256 AFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALID 315
Query: 206 VYSRFGCIEFARQVFQR--MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+ S+ G ++ AR +F + R WN++I G+ +GF +ALE F M + D
Sbjct: 316 MNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDH 375
Query: 264 VSFTGALTACS-----------HAGLIEDGLQ 284
++ A + HA I+ GL+
Sbjct: 376 YTYCSVFNAIAALKCLSLGKKVHARAIKSGLE 407
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 7/177 (3%)
Query: 108 YAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
Y+K +D A +FD M R WT L+ G + F + E+F MQ G+ PD
Sbjct: 115 YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAY 174
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
+L +C + ++ +G +H + + F + V L+++Y++ IE + +VF M +
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE 234
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTACSHAGLIED 281
+VSWN++I GF N +A + F +M +GV D +F G A G++ D
Sbjct: 235 VNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGV-TPDAQTFIGVAKAI---GMLRD 287
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 123/271 (45%), Gaps = 30/271 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF------------ 93
+ WTS ++ + + +A F+ MR G P+ TF ++L CA+
Sbjct: 443 ISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGI 502
Query: 94 -----PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ + +AL+DMYAK G + A VF+ + D WTA++ G + ++A
Sbjct: 503 ICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDA 562
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLMD 205
L+ FR M GVEP+ +T + VL C++ + GL + + K + ++D
Sbjct: 563 LQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVD 622
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFV--GEALEYFNLMQKGVFKTD 262
+ SR G + A + RM + + W +++ V+G V GE QK +
Sbjct: 623 LLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAA-----QKILSFKA 677
Query: 263 EVSFTGALTACSH--AGLIEDGLQYFDIMKK 291
E S T L + ++ +G +DGL +MK+
Sbjct: 678 ENSATYVLLSNTYIESGSYKDGLSLRHLMKE 708
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDN--VRVCNTLMDVYSRFGCIEFARQVFQR 222
++ +L C + R L +H ++ K F ++ + + N + YS+ I+ A ++F +
Sbjct: 71 LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFTGALTACSHAGLIED 281
M +R SW +I G A NG + E+F MQ +G+F D+ +++G L C IE
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIF-PDQFAYSGILQICIGLDSIEL 189
Query: 282 G 282
G
Sbjct: 190 G 190
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
TV WT+ I+ H + G + +A F RM G P+ +TF+ +L C S+ +V L
Sbjct: 543 TVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFAC----SHGGLVEEGL 598
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
Y K L + ++ + + +++ + + +A+E+ M VEP+ +
Sbjct: 599 --QYFK-----LMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMP---VEPNEMV 648
Query: 165 IISVLNVC 172
++L C
Sbjct: 649 WQTLLGAC 656
>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 579
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 148/279 (53%), Gaps = 20/279 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVS---- 101
V WT+ I+ +SG L+A + M+ T + V L+ C + +S
Sbjct: 151 VSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGH 210
Query: 102 -------------TALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
T+L+DMYAK G+++LA+ VF+ + + W AL++GF + + +
Sbjct: 211 MVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFANKT 270
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L MQ SG +PD +++IS L+ CA V L +G +H ++ K+ + D V L+D+
Sbjct: 271 LASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLYLDKVS-GTALIDM 329
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G + FAR +F ++ R L+ WN++I + ++G EAL F M++ D +F
Sbjct: 330 YAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATF 389
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH+GL+E+G +F ++ ++ P +H+ C+
Sbjct: 390 ASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACM 428
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 142/288 (49%), Gaps = 32/288 (11%)
Query: 26 KKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVT 85
+K PQ SI W S I + R+ E + RM G P TF
Sbjct: 42 EKMPQRSINA------------WNSMIIAYSRTNYPDEVLNLYYRMISEGIKPDSSTFTV 89
Query: 86 LLSGCA----------------DFPSN-NVMVSTALLDMYAKFGRMDLATVVFDVM--RG 126
L C+ DF +V V +++L++YAK G+MD A +VFD M R
Sbjct: 90 TLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRD 149
Query: 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186
WT ++ GF + +A++ +R MQ E D + ++ ++ C ++ GL +H
Sbjct: 150 VVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHG 209
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
++ +++ + + +L+D+Y++ G +E A +VF+ + ++++SW ++I GFA NGF +
Sbjct: 210 HMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFANK 269
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ-YFDIMKKIY 293
L MQ FK D VS +L+AC+ G ++ G + I+K++Y
Sbjct: 270 TLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLY 317
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 101/188 (53%), Gaps = 5/188 (2%)
Query: 101 STALLDMYAKFGRMD---LATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQI 155
+ ++ + A +GR++ A VF+ M R + W +++ + + +Y +E L + M
Sbjct: 18 ANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRTNYPDEVLNLYYRMIS 77
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
G++PD T L C+++ L +G + + +V V ++++++Y++ G ++
Sbjct: 78 EGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDK 137
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
A+ VF +M KR +VSW ++I GFA +G +A++ + MQK + D V G + AC+
Sbjct: 138 AKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTS 197
Query: 276 AGLIEDGL 283
G + GL
Sbjct: 198 LGDSKFGL 205
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 20/214 (9%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVS-- 101
+ + W + IS ++G + M+ G P ++ ++ LS CA + V S
Sbjct: 250 SVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLH 309
Query: 102 --------------TALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
TAL+DMYAK G + A +FD + D W A+++ + E
Sbjct: 310 GHIVKRLYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIE 369
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-LWMHRYVPKQDFKDNVRVCNTLM 204
AL F M+ + + PD+ T S+L+ C++ + G W H + K + + + ++
Sbjct: 370 ALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMV 429
Query: 205 DVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVG 237
D+ SR G +E A Q+ + MH K L W +++ G
Sbjct: 430 DLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSG 463
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 130/211 (61%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+++ ++D Y + G A ++FD MR W +++G+ +F++A+E FR M+
Sbjct: 207 EIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK 266
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+ P+Y+T++SVL + + +L +G W+H Y + + + + L+D+YS+ G IE
Sbjct: 267 KGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIE 326
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A VF+R+ + +++W+++I GFA++G G+A++ F M++ + +V++ LTACS
Sbjct: 327 KAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACS 386
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H GL+E+G +YF M + + P+IEH+GC+
Sbjct: 387 HGGLVEEGRRYFSQMVSVDGLEPRIEHYGCM 417
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 50/219 (22%)
Query: 114 MDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE---YFRVMQISGVEPDYLTIISV 168
+D A +F+ M R C W ++ GF + D + + ++ +M VEP+ T SV
Sbjct: 75 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDF--------------------KD------------- 195
L CA + G +H K F KD
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194
Query: 196 ------------NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+ + N ++D Y R G + AR +F +M +R++VSWN++I G+++NGF
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+A+E F M+KG + + V+ L A S G +E G
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG 293
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 137/267 (51%), Gaps = 20/267 (7%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMV 100
T V W IS + ++G + +MRL G P +T T+++
Sbjct: 217 TKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA----------- 265
Query: 101 STALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGV 158
Y + GR+D A VF + D WTA++ G+ K E+AL F M + +
Sbjct: 266 -------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHI 318
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
EPD T+ SV++ CA + +L G +H +N+ V + L+D+YS+ G I+ AR
Sbjct: 319 EPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARS 378
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF M R +VSWN++IVG A NG +ALE F M + FK D V+F G L+AC H
Sbjct: 379 VFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNW 438
Query: 279 IEDGLQYFDIMKKIYRVSPQIEHHGCI 305
IE G +YFD + + ++P ++H+ C+
Sbjct: 439 IEQGQEYFDSISNQHGMTPTLDHYACM 465
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 109/232 (46%), Gaps = 33/232 (14%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK----------- 139
F + + LL +YAKFG++ A +FD M D W ALL+ + K
Sbjct: 53 FQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATF 112
Query: 140 -----RDYF---------------EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLG 179
RD +E+LE F+ MQ G EP TI+S+LN A + L
Sbjct: 113 DRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLR 172
Query: 180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA 239
G +H + ++F NV + N L D+Y++ G IE AR +F + K+ LVSWN +I G+A
Sbjct: 173 YGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYA 232
Query: 240 VNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
NG + + + M+ D+V+ + + A G +++ + F K+
Sbjct: 233 KNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKE 284
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 117/275 (42%), Gaps = 61/275 (22%)
Query: 32 SIQTNNSKSTID-----TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL 86
SIQ N K+T D +V + ++I+ + C E+ F RM+ G P+ T V++
Sbjct: 104 SIQ--NLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSI 161
Query: 87 LSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF 129
L+ A NV + AL DMYAK G ++ A +FD + +
Sbjct: 162 LNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNL 221
Query: 130 --WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
W +++G+ K E+ + M++SG PD +T+
Sbjct: 222 VSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTM---------------------- 259
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
+T++ Y + G ++ AR+VF ++ +V W +++VG+A NG +A
Sbjct: 260 -------------STIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDA 306
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
L FN M + D + + +++C+ + G
Sbjct: 307 LLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHG 341
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
H + P F + N L+ +Y++FG + A+ +F +M KR SWN+++ +A +G +
Sbjct: 51 HLFQPTDSF-----LHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSI 105
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
F+ M F+ D VS+ + S ++ L+ F M++
Sbjct: 106 QNLKATFDRMP---FR-DSVSYNTTIAGFSGNSCPQESLELFKRMQR 148
>gi|357131197|ref|XP_003567226.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Brachypodium distachyon]
Length = 648
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 150/278 (53%), Gaps = 34/278 (12%)
Query: 58 SGCILEA------ALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------------N 96
SGC L A AL F RMR+ G +T +TL+ A PS
Sbjct: 144 SGCALHALPAACFAL-FRRMRVAGVRFDAVTLLTLVP--AAPPSVVPQLHALAARAGLAA 200
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKRDYFEEALEYFRV 152
V+ L+ +YA+ G LA VFD M R W A+L+ + +AL+ +
Sbjct: 201 ETSVANCLISVYARRG-AALARQVFDEMPAASRDLVSWNAVLSAHSQNGLAVDALDLYSR 259
Query: 153 MQI---SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ--DFKDNVRVCNTLMDVY 207
M+ GVEPD +T++SVL+ CA++ +GL + RY+ + F+ NV++CN L++ Y
Sbjct: 260 MRGCDGHGVEPDAVTLVSVLSSCAHLGARSVGLGVERYMRGKLPGFRTNVQLCNALINFY 319
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
+R GC+ A+Q+F M ++++VSW ++I G+ ++G A+ F M + D V+
Sbjct: 320 ARCGCLPQAQQLFNEMPRKSIVSWTALITGYGMHGHGEVAINLFQTMVSEGIRPDNVAMV 379
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L+ACSHAG+ ++G +YF M+ Y++ P +EH+ C+
Sbjct: 380 GLLSACSHAGMYDEGRKYFSAMESAYQLRPTLEHYTCM 417
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 20/212 (9%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--------RGCDFWTALLNGFVKRDYFE 144
PS++ + +ALL Y++ G + A + D M C + +L++G
Sbjct: 94 LPSSDAYLVSALLSSYSRLGLLPCAHQLLDEMPLASTPPATLCTAFNSLISGCALHALPA 153
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
FR M+++GV D +T+++++ + +H + V N L+
Sbjct: 154 ACFALFRRMRVAGVRFDAVTLLTLVPAAPP----SVVPQLHALAARAGLAAETSVANCLI 209
Query: 205 DVYSRFGCIEFARQVFQRM--HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ----KGV 258
VY+R G ARQVF M R LVSWN+++ + NG +AL+ ++ M+ GV
Sbjct: 210 SVYARRGA-ALARQVFDEMPAASRDLVSWNAVLSAHSQNGLAVDALDLYSRMRGCDGHGV 268
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
+ D V+ L++C+H G GL M+
Sbjct: 269 -EPDAVTLVSVLSSCAHLGARSVGLGVERYMR 299
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 31/206 (15%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMR---LYGTNPSHITFVTLLSGCADFPS------- 95
V W + +S H ++G ++A ++RMR +G P +T V++LS CA +
Sbjct: 235 VSWNAVLSAHSQNGLAVDALDLYSRMRGCDGHGVEPDAVTLVSVLSSCAHLGARSVGLGV 294
Query: 96 ------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRD 141
NV + AL++ YA+ G + A +F+ M + WTAL+ G+
Sbjct: 295 ERYMRGKLPGFRTNVQLCNALINFYARCGCLPQAQQLFNEMPRKSIVSWTALITGYGMHG 354
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC- 200
+ E A+ F+ M G+ PD + ++ +L+ C++ G +Y + +R
Sbjct: 355 HGEVAINLFQTMVSEGIRPDNVAMVGLLSACSHAGMYDEG---RKYFSAMESAYQLRPTL 411
Query: 201 ---NTLMDVYSRFGCIEFARQVFQRM 223
++D+ R G ++ AR++ M
Sbjct: 412 EHYTCMVDLLGRAGRLKEARELISSM 437
>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 733
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 149/286 (52%), Gaps = 19/286 (6%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--- 95
K + V WT+ IS + + G A F RMR +P+ TF ++S CA+ +
Sbjct: 285 KMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKW 344
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
N + V+ +++ +Y+K G + A++VF + D W+ +++ + +
Sbjct: 345 GEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQ 404
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
Y +EA +Y M+ G +P+ + SVL+VC ++ L G +H ++ V
Sbjct: 405 GGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMV 464
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
+ ++ +YS+ G ++ A ++F M ++SW ++I G+A +G+ EA+ F +
Sbjct: 465 HSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGL 524
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
K D V F G LTAC+HAG+++ G YF +M +YR+SP EH+GC+
Sbjct: 525 KPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCL 570
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 120/266 (45%), Gaps = 20/266 (7%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLY-GTNPSHITFVTLLSGCA------ 91
K T + WT+ I+ + + EA + F+ M ++ G L CA
Sbjct: 82 KMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACALGVNIC 141
Query: 92 ------DFPS-----NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFV 138
F ++V VS+AL+DMY K G+++ VF+ M R WTA++ G V
Sbjct: 142 FGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLV 201
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
Y E L YF M S V D T L A+ L G +H KQ F ++
Sbjct: 202 HAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSF 261
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
V NTL +Y++ G ++ ++F++M +VSW ++I + G A+E F M+K
Sbjct: 262 VINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSY 321
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQ 284
++ +F +++C++ + G Q
Sbjct: 322 VSPNKYTFAAVISSCANLAAAKWGEQ 347
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 151/283 (53%), Gaps = 20/283 (7%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTN-PSHITFVTLLSGCADFP------- 94
D + W+ ISR+ +S EA F RMR P++ TF ++L CA
Sbjct: 269 DDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQ 328
Query: 95 ----------SNNVMVSTALLDMYAKFGRMDLATVVF--DVMRGCDFWTALLNGFVKRDY 142
+NV VS AL+D+YAK G ++ + +F + W ++ G+V+
Sbjct: 329 IHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGD 388
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
E+AL F M ++P +T SVL A++ L G +H K + + V N+
Sbjct: 389 GEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANS 448
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+Y++ G I+ AR F +M K+ VSWN++I G++++G EAL F++MQ+ K +
Sbjct: 449 LIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPN 508
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+++F G L+ACS+AGL++ G +F M + Y + P IEH+ C+
Sbjct: 509 KLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCM 551
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 127/259 (49%), Gaps = 20/259 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WT ++ + + C ++ L F +MR+ G P++ T L C +
Sbjct: 171 VSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGC 230
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++ V ALL++Y K G + A F+ M D W+ +++ + + D +EA
Sbjct: 231 ALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEA 290
Query: 147 LEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
LE F R+ Q S V P+ T SVL CA++ L +G +H V K NV V N LMD
Sbjct: 291 LELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMD 350
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
VY++ G IE + ++F ++ V+WN+IIVG+ G +AL F+ M + EV+
Sbjct: 351 VYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVT 410
Query: 266 FTGALTACSHAGLIEDGLQ 284
++ L A + +E G Q
Sbjct: 411 YSSVLRASASLVALEPGRQ 429
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 3/199 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+ V TAL+D Y+ G +D A VFD + D WT ++ + + E++L F M+
Sbjct: 138 DAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMR 197
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
I G P+ TI + L C + +G +H K + ++ V L+++Y++ G I
Sbjct: 198 IMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIA 257
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALTAC 273
A+Q F+ M K L+ W+ +I +A + EALE F M Q V + +F L AC
Sbjct: 258 EAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQAC 317
Query: 274 SHAGLIEDGLQYFDIMKKI 292
+ L+ G Q + K+
Sbjct: 318 ASLVLLNLGNQIHSCVLKV 336
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 18/212 (8%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
S ++ LL+ Y FG ++ A+ +FD M + + L GF + F+ A
Sbjct: 35 SLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLR 94
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
+ G E + ++L + ++ L +H YV K + + V L+D YS G
Sbjct: 95 LFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGN 154
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ ARQVF ++ + +VSW ++ +A N ++L F M+ ++ + + + AL +
Sbjct: 155 VDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKS 214
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
C +GL+ F + K + HGC
Sbjct: 215 C-------NGLEAFKVGKSV---------HGC 230
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 143/280 (51%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------- 91
V W S I+ + G F RM G P+ T ++L C+
Sbjct: 273 VVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHG 332
Query: 92 ----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ ++ V+++L+D+Y K G + A VF M + W +++G+VK + E
Sbjct: 333 YIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLE 392
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL F M+ +GV+PD +T SVL C+ + L G +H ++ + + N V L+D
Sbjct: 393 ALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLD 452
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G ++ A +F ++ +R VSW S+I + +G EAL+ F MQ+ K D+V+
Sbjct: 453 MYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVT 512
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L+ACSHAGL+++G YF+ M Y P +EH+ C+
Sbjct: 513 FLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCL 552
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 104/182 (57%), Gaps = 2/182 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V+V ++ + MYAK + A +FD M R W +++ + + E+ALE F M+
Sbjct: 140 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 199
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+SG +PD +T+ +V++ CA + L G +H + + F + V + L+D+Y + GC+E
Sbjct: 200 VSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLE 259
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A++VF+++ ++ +VSWNS+I G+++ G +E F M + + + + L ACS
Sbjct: 260 MAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 319
Query: 275 HA 276
+
Sbjct: 320 RS 321
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 4/191 (2%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG---CDFWTALLNGFVKRDYFEEALEYF-R 151
NN+ + +L+++Y A +VF + W L+ K F E LE F R
Sbjct: 36 NNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHR 95
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
++ ++PD T SVL C+ + +G G +H +V K F +V V ++ + +Y++
Sbjct: 96 LLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCN 155
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
E A ++F M +R + SWN++I + +G +ALE F M+ FK D V+ T ++
Sbjct: 156 VFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVIS 215
Query: 272 ACSHAGLIEDG 282
+C+ +E G
Sbjct: 216 SCARLLDLERG 226
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 120/210 (57%), Gaps = 10/210 (4%)
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVKRDYFEEALEYFRVMQI 155
V V +LL +YA G + A VF++MR D +++NGF EAL FR M
Sbjct: 165 VFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSA 224
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
GVEPD T++S+L+ A + L +G +H Y+ K ++N V N+L+D+Y++ I
Sbjct: 225 EGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAI-- 282
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
+R VSW S+IVG AVNGF EALE F M+ E++F G L ACSH
Sbjct: 283 ------WEXERNAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSH 336
Query: 276 AGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G++++G YF MK+ + + P+IEH+GC+
Sbjct: 337 CGMLDEGFDYFRRMKEEFGIMPRIEHYGCM 366
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 6/156 (3%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPD---YLTIISVLNVCANVRTLGIGLWMHR 186
W + G+ + D AL ++R M +S +EPD Y ++ ++ NVR G +H
Sbjct: 98 WNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISKSLNVRE---GEAIHS 154
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
+ F+ V V N+L+ +Y+ G E A VF+ M R LV+ S+I GFA+NG E
Sbjct: 155 VTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVINGFALNGRPSE 214
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
AL F M + D + L+A + G +E G
Sbjct: 215 ALTLFREMSAEGVEPDGFTVVSLLSASAELGALELG 250
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 27/203 (13%)
Query: 63 EAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALL 105
EA F M G P T V+LLS A+ + N V+ +LL
Sbjct: 214 EALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLL 273
Query: 106 DMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
D+YAK +++ R WT+L+ G + EEALE FR M+ G+ P +T
Sbjct: 274 DLYAK------CDAIWEXERNAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITF 327
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV--CNTLMDVYSRFGCIEFARQVFQRM 223
+ VL C++ L G R + K++F R+ ++D+ SR G ++ A + Q M
Sbjct: 328 VGVLYACSHCGMLDEGFDYFRRM-KEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNM 386
Query: 224 H-KRTLVSWNSIIVGFAVNGFVG 245
+ V+W +++ ++G +G
Sbjct: 387 PVQPNAVTWRTLLGACTIHGHLG 409
>gi|296089760|emb|CBI39579.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 131/265 (49%), Gaps = 25/265 (9%)
Query: 66 LEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVM-----------------VSTALLDMY 108
L F++M+ G P TF LL C+ N + + ++D+Y
Sbjct: 93 LLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIGIIDLY 152
Query: 109 AKFGRMDLATVVFDVMRGCDF-------WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
GRM+ A VFD M D W +++ G + EALE FR M G EPD
Sbjct: 153 TSCGRMEDAKKVFDEMLDRDMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPD 212
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSRFGCIEFARQVF 220
T++++L VCA + + +G W+H Y +D + V N+L+D Y + G +E A +VF
Sbjct: 213 DATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVF 272
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
M ++ +VSWN++I G NG + F M + ++ +F G L+ C+HAGL+E
Sbjct: 273 NEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVE 332
Query: 281 DGLQYFDIMKKIYRVSPQIEHHGCI 305
G F M +++ P++EH GC+
Sbjct: 333 RGRNLFTSMTVDHKMEPKLEHFGCM 357
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 97/232 (41%), Gaps = 34/232 (14%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV----- 98
+ V W S I+ +SG EA F M +G P T VT+L CA + +V
Sbjct: 177 SVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIH 236
Query: 99 -------------MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
V +L+D Y K G ++ A VF+ M + W A+++G
Sbjct: 237 SYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKG 296
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-------HRYVPKQDFKDN 196
E + F M GV P+ T + VL+ CA+ + G + H+ PK +
Sbjct: 297 ELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSMTVDHKMEPKLEH--- 353
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKR-TLVSWNSIIVGFAVNGFVGEA 247
++D+ +R GC+E AR + + M R V W S++ + G V A
Sbjct: 354 ---FGCMVDLLARNGCMEEARDLVRTMPMRPNAVLWGSLLSAYRTIGDVKHA 402
>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 126/213 (59%), Gaps = 15/213 (7%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++V ++ +L+ YA R+D A VFD M R W +++ FV+ F+ AL F M
Sbjct: 161 SDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEM 220
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q EPD TI S+ N CA + +L +G+ ++V + +L+D+Y + G +
Sbjct: 221 Q-KFFEPDGYTIQSIANACAGMGSLSLGI-----------VNDVLLNTSLVDMYCKCGSL 268
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALTA 272
E A Q+F RM KR + SWNS+I+GF+ +G V ALEYF M + + ++F G L+A
Sbjct: 269 ELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSA 328
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
C+H GL+ +G +YFD+M Y++ P++EH+GC+
Sbjct: 329 CNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCL 361
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 130 WTALLNGFVKR-DYFEEALE-YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
W AL+ + D + A+ Y R+++ V D T VL CA + L G +H
Sbjct: 94 WNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQ 153
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
+ K F +V + N+L+ Y+ ++FA+ VF RM +R+LVSWN +I F G A
Sbjct: 154 ILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAA 213
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
L F MQK F+ D + AC+ G + G+
Sbjct: 214 LNLFGEMQK-FFEPDGYTIQSIANACAGMGSLSLGI 248
>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 597
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 146/279 (52%), Gaps = 21/279 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITF---VTLLSGCADFPSNNVM----- 99
W + + R+ E+ L + +MR G P T+ V +S P +
Sbjct: 77 WNTLFKGYVRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVL 136
Query: 100 ---------VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
V+T L+ MY KFG + A +F+ M+ D W A + V+ ALE
Sbjct: 137 KNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALE 196
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
YF M V+ D T++S+L+ C + +L IG ++ K++ + N+ V N +D++
Sbjct: 197 YFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVENARLDMHL 256
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G E AR +F M +R +VSW+++IVG+A+NG GEAL F +MQ + + V+F G
Sbjct: 257 KCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPNYVTFLG 316
Query: 269 ALTACSHAGLIEDGLQYFDIMKKI--YRVSPQIEHHGCI 305
L+ACSHAGL+ +G +YF +M ++ + P+ EH+ C+
Sbjct: 317 VLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACM 355
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H V + F + + L++ G + +ARQVF M K + WN++ G+ N
Sbjct: 30 IHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYVRNQL 89
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
E++ + M+ + DE ++ + A S G++ G+
Sbjct: 90 PFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGV 129
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 157/283 (55%), Gaps = 32/283 (11%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
+ WT+ I+ ++G I EA L F RM + +++ +++G A
Sbjct: 209 ISWTAMIAGLSKNGRIDEARLLFDRM----PERNVVSWNAMITGYAQNLRLDEALDLFER 264
Query: 92 ----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
D PS N M++ + + G + A +F+ M + WT ++ G V+ EE
Sbjct: 265 MPERDLPSWNTMITGLIQN-----GDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEE 319
Query: 146 ALEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
AL+ F R++ +G +P+ T +SVL C+N+ LG G +H+ + K ++D+ V + L+
Sbjct: 320 ALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALI 379
Query: 205 DVYSRFGCIEFARQVFQR--MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
++YS+ G + AR++F +R LVSWN II +A +G+ EA+ +F M+K FK D
Sbjct: 380 NMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPD 439
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+V++ G L+ACSHAGL+E+GL+YFD + K + + +H+ C+
Sbjct: 440 DVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACL 482
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 114/241 (47%), Gaps = 37/241 (15%)
Query: 52 ISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKF 111
I+ + G I+EA F MR P IT+ T++SG Y K
Sbjct: 59 ITNLSKDGRIMEARRLFDEMR----EPDVITWTTVISG------------------YIKC 96
Query: 112 GRMDLATVVFD---VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G ++ A +FD + WTA++ G+++ + +A + F M V ++ ++
Sbjct: 97 GMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNV----VSWNTM 152
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
++ A + +++ +P++ NV NT+M + ++ G IE AR++F RM +R +
Sbjct: 153 IDGYAQNGRIDSAMYLFEKMPER----NVVSWNTVMSMLAQCGRIEEARRLFDRMPERDV 208
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
+SW ++I G + NG + EA F+ M + + VS+ +T + +++ L F+
Sbjct: 209 ISWTAMIAGLSKNGRIDEARLLFDRMP----ERNVVSWNAMITGYAQNLRLDEALDLFER 264
Query: 289 M 289
M
Sbjct: 265 M 265
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 188 VPKQDF--KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
+P++DF NV CN ++ S+ G I AR++F M + +++W ++I G+ G +
Sbjct: 41 IPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIE 100
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
EA F+ + K + V++T + + I D + F+ M
Sbjct: 101 EARRLFDRVDA---KKNVVTWTAMVGGYIRSNKISDAEKLFNEM 141
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 149/276 (53%), Gaps = 19/276 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------ 92
+ WT+ IS + ++G + A F M + +++ +L G
Sbjct: 202 VISWTTMISGYVQNGQVDVARKLFEVM----PEKNEVSWTAMLMGYTQGGRIEEASELFD 257
Query: 93 -FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEY 149
P V+ A++ + + G + A VFD +R D W+A++ + ++ + EAL
Sbjct: 258 AMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNL 317
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F +MQ GV+ ++ ++ISVL+VCA++ +L G +H + K F +V V + L+ +Y +
Sbjct: 318 FALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVK 377
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G + ARQ+F R + +V WNSII G+A +G V EAL+ F+ M TD V+F G
Sbjct: 378 CGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGV 437
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACS+ G +++GL+ F+ MK Y V P+ EH+ C+
Sbjct: 438 LSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACM 473
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 31/261 (11%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC------------- 90
+ + S I+R+ R G I A F M G +++ ++++G
Sbjct: 15 VAIAYNSQIARYARIGQIESARRVFDEMPDKGI----VSWNSMVAGYFQNNRPREARYLF 70
Query: 91 ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
P N + L+ Y K + A FD M R WTA++ G+V+ EA
Sbjct: 71 DKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAET 130
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M E + ++ +L VR + + +P +D V ++ Y
Sbjct: 131 LFWQMP----EKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKD----VVARTNMISGYC 182
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G + AR++F M +R ++SW ++I G+ NG V A + F +M + +EVS+T
Sbjct: 183 QEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMP----EKNEVSWTA 238
Query: 269 ALTACSHAGLIEDGLQYFDIM 289
L + G IE+ + FD M
Sbjct: 239 MLMGYTQGGRIEEASELFDAM 259
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 13/226 (5%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P +VM +L YA G ++ +F+ M R W L+ G+V+ F+EALE F
Sbjct: 245 MPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECF 304
Query: 151 RVMQI----SGVE-------PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
+ M + G E P+ T+++VL C+ + L +G W+H Y +K N+ V
Sbjct: 305 KRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFV 364
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
N L+D+Y++ G IE A VF + + +++WN+II G A++G V +AL F M++
Sbjct: 365 GNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGE 424
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D V+F G L+AC+H GL+ +GL +F M Y + PQIEH+GC+
Sbjct: 425 RPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCM 470
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 108/279 (38%), Gaps = 71/279 (25%)
Query: 38 SKSTIDTTVQ-----WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD 92
++ D T Q W + + ++ C L+ + F RM G +P+ TF ++ CA
Sbjct: 73 ARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCAT 132
Query: 93 FPS-----------------NNVMVSTALLDMYAKFGRMDLATV--VFDVMRGCDF--WT 131
+ +N V AL+ MY+ G + +A VF MR + WT
Sbjct: 133 ANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWT 192
Query: 132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
A++ V A F + P++
Sbjct: 193 AIVAAHVACRDMVSARRLFDL-----------------------------------APQR 217
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
D V + N ++ Y G + AR++F RM R ++SWN+++ G+A NG V ++ F
Sbjct: 218 D----VVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLF 273
Query: 252 NLMQ-KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
M + V+ S+ G + GL ++ L+ F M
Sbjct: 274 EEMPVRNVY-----SWNGLIGGYVRNGLFKEALECFKRM 307
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRV 152
N V+ + + A+ G + A VFD W A+ G+ + + + + F
Sbjct: 51 EGNDYVTPSFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFAR 110
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M +G P+ T V+ CA G +H V K+ FK N V L+ +YS G
Sbjct: 111 MHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGG 170
Query: 213 --IEFARQVFQRMHKRTLVSWNSII 235
+ A +VF M + + +W +I+
Sbjct: 171 VFVADAYKVFAEMRDKNVFAWTAIV 195
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 6/220 (2%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
D PS + + A+L YA+ G++D A +F M R W +L G+ EAL
Sbjct: 175 DMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGL 234
Query: 150 FRVM---QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
FR M V P+ T+ ++L CA L G+W+H Y+ + D+ + L+D+
Sbjct: 235 FRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDM 294
Query: 207 YSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
Y + G I+ A QVF++ K+ L SW ++I G A++G +AL F++MQ D+V+
Sbjct: 295 YCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVT 354
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L AC+H GL+++GL YF M+ +R++P+IEH+GC+
Sbjct: 355 LVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCM 394
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 84/201 (41%), Gaps = 20/201 (9%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
+ TALL YA G D A +FD M +G TA+ V +A+ F M G
Sbjct: 47 LPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADG 106
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ---------DFKDNVRVCNTLMDVYS 208
V PD + + L C G G W R P + +V V L+ VY
Sbjct: 107 VFPDNVAVAVALGACH-----GAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYG 161
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
G + +R+VF M R+ ++WN+++ +A +G V A E F M + D VS+
Sbjct: 162 ESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMP----RRDVVSWNT 217
Query: 269 ALTACSHAGLIEDGLQYFDIM 289
L AG + L F M
Sbjct: 218 VLAGYCVAGRCREALGLFRQM 238
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 6/220 (2%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
D PS + + A+L YA+ G++D A +F M R W +L G+ EAL
Sbjct: 175 DMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGL 234
Query: 150 FRVM---QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
FR M V P+ T+ ++L CA L G+W+H Y+ + D+ + L+D+
Sbjct: 235 FRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDM 294
Query: 207 YSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
Y + G I+ A QVF++ K+ L SW ++I G A++G +AL F++MQ D+V+
Sbjct: 295 YCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVT 354
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L AC+H GL+++GL YF M+ +R++P+IEH+GC+
Sbjct: 355 LVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCM 394
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 84/201 (41%), Gaps = 20/201 (9%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
+ TALL YA G D A +FD M +G TA+ V +A+ F M G
Sbjct: 47 LPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADG 106
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ---------DFKDNVRVCNTLMDVYS 208
V PD + + L C G G W R P + +V V L+ VY
Sbjct: 107 VFPDNVAVAVALGACH-----GAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYG 161
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
G + +R+VF M R+ ++WN+++ +A +G V A E F M + D VS+
Sbjct: 162 ESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMP----RRDVVSWNT 217
Query: 269 ALTACSHAGLIEDGLQYFDIM 289
L AG + L F M
Sbjct: 218 VLAGYCVAGRCREALGLFRQM 238
>gi|302789766|ref|XP_002976651.1| hypothetical protein SELMODRAFT_105614 [Selaginella moellendorffii]
gi|300155689|gb|EFJ22320.1| hypothetical protein SELMODRAFT_105614 [Selaginella moellendorffii]
Length = 341
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 137/248 (55%), Gaps = 18/248 (7%)
Query: 61 ILEAALEF----TRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDL 116
IL A LE T MR++ SHI + GC ++++V+T L+ MY++ G +D
Sbjct: 16 ILAACLEPGDLPTGMRIH----SHI----VDCGCG----SDIVVATGLIGMYSRCGSVDR 63
Query: 117 ATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A VFD M R WTA++ + + +A+E F+ M V PD T SV+N C
Sbjct: 64 AREVFDRMSYRDTVAWTAMIAAYAHTGHPRQAMELFKAMDTWDVRPDGFTYASVINACTG 123
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ L G+ +HR + + F + V N+L+D+YS+ G + AR VF M KR + +W ++
Sbjct: 124 MGALADGMVVHREIVRDGFDGDPVVQNSLVDMYSKCGSLGEARAVFDDMVKRDVATWTAL 183
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
G+A +GF EALE F M DE+ FT L ACSH GL+++G YF M++ +
Sbjct: 184 FSGYAKHGFNNEALETFWCMALESMALDEIIFTTVLQACSHLGLVDEGRDYFVSMRRDFG 243
Query: 295 VSPQIEHH 302
++P +EH+
Sbjct: 244 LAPGVEHY 251
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 1/150 (0%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M + V P +L C L G+ +H ++ ++ V L+ +YSR G
Sbjct: 1 MDTAKVRPTSFFFSGILAACLEPGDLPTGMRIHSHIVDCGCGSDIVVATGLIGMYSRCGS 60
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ AR+VF RM R V+W ++I +A G +A+E F M + D ++ + A
Sbjct: 61 VDRAREVFDRMSYRDTVAWTAMIAAYAHTGHPRQAMELFKAMDTWDVRPDGFTYASVINA 120
Query: 273 CSHAGLIEDGL-QYFDIMKKIYRVSPQIEH 301
C+ G + DG+ + +I++ + P +++
Sbjct: 121 CTGMGALADGMVVHREIVRDGFDGDPVVQN 150
>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 131/217 (60%), Gaps = 7/217 (3%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
++V ++ +L+ YA G ++ A VFD M R W A+++ FV FE AL+ F
Sbjct: 159 SDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQF 218
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ----DFKDNVRVCNTLMDVYSR 209
Q EPD TI SV+N CA + L +G+W H ++ + +D+V V N+L+D+Y +
Sbjct: 219 QQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCK 278
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTG 268
G ++ A Q+F+ M K + SWNS+I+GFA++G ALE F M + F + ++F G
Sbjct: 279 CGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKGELALECFERMIRISRFVPNSITFVG 338
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+AC+H ++ +G +YFD+M Y++ PQ+EH+GC+
Sbjct: 339 VLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCL 375
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
E L Y ++Q S PD T VL CA + L G H ++ K F+ +V + N+L
Sbjct: 108 EAILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSL 167
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+ Y+ G +E A+ VF +M +R+LVSWN++I F + G AL+ F Q+ F+ D
Sbjct: 168 IHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDG 227
Query: 264 VSFTGALTACSHAGL 278
+ + AC AGL
Sbjct: 228 YTIQSVINAC--AGL 240
>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
Length = 1008
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 135/257 (52%), Gaps = 19/257 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSNNV-----------------MVSTALLDMYAK 110
F M+ G + + + T+LS P ++ ++ AL+DMY+K
Sbjct: 523 FREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSK 582
Query: 111 FGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G +D A F + WTAL+ G+V+ EEAL+ F M+ +G+ PD T S+
Sbjct: 583 CGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSI 642
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
+ +++ +G+G +H Y+ + +K +V + L+D+Y++ GC++ A + F M +R
Sbjct: 643 IKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNS 702
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
+SWN++I +A G A++ F M F D V+F L ACSH GL ++ ++YF +
Sbjct: 703 ISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHL 762
Query: 289 MKKIYRVSPQIEHHGCI 305
MK Y +SP EH+ C+
Sbjct: 763 MKHQYSISPWKEHYACV 779
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 9/170 (5%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVF--DVMRGCDFWTALLNGFVKRDYFEEALEYF 150
P N+ +L Y+ G + A +F R WT ++ +AL F
Sbjct: 283 MPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLF 342
Query: 151 RVMQISGVEPDYLTIISVLNVCA-NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
R M GV PD +T+ +VLN+ V +L H + K +V VCNTL+D Y +
Sbjct: 343 RAMLGEGVIPDRVTVTTVLNLPGCTVPSL------HPFAIKFGLDTHVFVCNTLLDAYCK 396
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
G + AR+VF MH + V++N++++G + G +AL+ F M++ +
Sbjct: 397 HGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGY 446
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 109/268 (40%), Gaps = 43/268 (16%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS--GCADFPS---------- 95
WT + H +G +A F M G P +T T+L+ GC PS
Sbjct: 322 WTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCT-VPSLHPFAIKFGL 380
Query: 96 -NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+V V LLD Y K G + A VF M D + A++ G K +AL+ F
Sbjct: 381 DTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAA 440
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M+ +G L ++ ++ R+ + NV V N+L+D YS+ C
Sbjct: 441 MRRAGYSRHPLHLLQY----SHSRSRSTSVL------------NVFVNNSLLDFYSKCDC 484
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ R++F M +R VS+N II +A N L F MQK F + + L+
Sbjct: 485 LDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSV 544
Query: 273 CS-----------HAGLIEDGLQYFDIM 289
HA L+ GL D++
Sbjct: 545 AGSLPDVHIGKQIHAQLVLLGLASEDLL 572
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 137/267 (51%), Gaps = 20/267 (7%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMV 100
T V W IS + ++G + +MRL G P +T T+++
Sbjct: 217 TKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA----------- 265
Query: 101 STALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGV 158
Y + GR+D A VF + D WTA++ G+ K E+AL F M + +
Sbjct: 266 -------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHI 318
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
EPD T+ SV++ CA + +L G +H +N+ V + L+D+YS+ G I+ AR
Sbjct: 319 EPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARS 378
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF M R +VSWN++IVG A NG +ALE F M + FK D V+F G L+AC H
Sbjct: 379 VFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNW 438
Query: 279 IEDGLQYFDIMKKIYRVSPQIEHHGCI 305
IE G +YFD + + ++P ++H+ C+
Sbjct: 439 IEQGQEYFDSITNQHGMTPTLDHYACM 465
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 109/232 (46%), Gaps = 33/232 (14%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK----------- 139
F + + LL +YAKFG++ A +FD M D W ALL+ + K
Sbjct: 53 FQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATF 112
Query: 140 -----RDYF---------------EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLG 179
RD +E+LE F+ MQ G EP TI+S+LN A + L
Sbjct: 113 DRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLR 172
Query: 180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA 239
G +H + ++F NV + N L D+Y++ G IE AR +F + K+ LVSWN +I G+A
Sbjct: 173 YGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYA 232
Query: 240 VNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
NG + + + M+ D+V+ + + A G +++ + F K+
Sbjct: 233 KNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKE 284
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 117/275 (42%), Gaps = 61/275 (22%)
Query: 32 SIQTNNSKSTID-----TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL 86
SIQ N K+T D +V + ++I+ + C E+ F RM+ G P+ T V++
Sbjct: 104 SIQ--NLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSI 161
Query: 87 LSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF 129
L+ A NV + AL DMYAK G ++ A +FD + +
Sbjct: 162 LNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNL 221
Query: 130 --WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
W +++G+ K E+ + M++SG PD +T+
Sbjct: 222 VSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTM---------------------- 259
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
+T++ Y + G ++ AR+VF ++ +V W +++VG+A NG +A
Sbjct: 260 -------------STIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDA 306
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
L FN M + D + + +++C+ + G
Sbjct: 307 LLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHG 341
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 9/107 (8%)
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244
H + P F + N L+ +Y++FG + A+ +F +M KR + SWN+++ +A +G +
Sbjct: 51 HLFQPTDSF-----LHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSI 105
Query: 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
F+ M F+ D VS+ + S ++ L+ F M++
Sbjct: 106 QNLKATFDRMP---FR-DSVSYNTTIAGFSGNSCPQESLELFKRMQR 148
>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
[Vitis vinifera]
Length = 807
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 147/279 (52%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF---PS------- 95
+ W++ IS +SGC +A F ++ V +L C+ P
Sbjct: 384 IMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGL 443
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++V V +AL+D+YAK M + VF + D W AL++G+ + + +EA
Sbjct: 444 ATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEA 503
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ FR MQ+ + P+ +TI +L+VCA++ + + +H Y+ +Q V V N+L+
Sbjct: 504 LKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIAT 563
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G I + F++M +R VSWNSII+G ++ E + F+ M K D V+F
Sbjct: 564 YAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTF 623
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
T L+ACSHAG +++G +YF M + + + PQ+E + C+
Sbjct: 624 TAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCM 662
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 127/276 (46%), Gaps = 25/276 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRL-YGTNPSHITFVTLLSGCADFPS-------NN 97
V W + IS +S + + F M +G P+ + V+ + C+ S +
Sbjct: 176 VSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHG 235
Query: 98 VMVST----------ALLDMYAKFGRMDLATVVFD-------VMRGCDFWTALLNGFVKR 140
V+V + +L++MY K G + A +F+ V R W +++G+V
Sbjct: 236 VVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSN 295
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
F +AL F M + G++PDY T++S+ ++C+ + G +H + K K+N+RV
Sbjct: 296 GCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVE 355
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
L+D+Y + G + ++F+R L+ W+++I A +G +ALE F +
Sbjct: 356 TALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGL 415
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
D L ACS L +G+Q + K+ VS
Sbjct: 416 ADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVS 451
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 90/183 (49%), Gaps = 10/183 (5%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVE-PDYLTIISVLNVCANVRTLGIGLWMHRY 187
F ++ + + +F++A+ + M GV+ ++ ++ + + G +H +
Sbjct: 75 FANNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGH 134
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
V K D+V V N+L+ +Y + G +E A Q+F++M + LVSWN++I GF + +
Sbjct: 135 VLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRS 194
Query: 248 LEYFNLM--QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI------YRVSPQI 299
L +F M + G++ + V+ ++ +CS + G + ++ K Y VS I
Sbjct: 195 LMFFRSMVWEFGIY-PNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLI 253
Query: 300 EHH 302
E +
Sbjct: 254 EMY 256
>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
Length = 562
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 137/281 (48%), Gaps = 22/281 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYG-TNPSHITFVTLLSGCA----------- 91
T V W++ I + G EA L F RMR G P+ +TF + + C
Sbjct: 50 TVVSWSAMIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREI 109
Query: 92 --------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
+ S+N ++ ALL+MY + G ++ A VFD M D WT+++ +
Sbjct: 110 HALAMASGELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENC 169
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
EALE F M + G+ P +T+ SVLN CA L +G +H + F +V
Sbjct: 170 ELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQT 229
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+D+Y++ G +E + +VF M R VSW ++I A +G EALE F M
Sbjct: 230 ALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVA 289
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
D +F L ACSHAGLI++ L++F M + Y ++P H+
Sbjct: 290 DATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHY 330
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-GVF 259
N L+ +Y++ GC++ AR +F + +RT+VSW+++I +A++G EAL F+ M+ G
Sbjct: 24 NGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRMRNDGRV 83
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDI 288
+ + ++FTG AC G+IED Q +I
Sbjct: 84 EPNAMTFTGVFNAC---GVIEDLEQGREI 109
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 146/281 (51%), Gaps = 21/281 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-------- 96
TV + + +S + + EA L F +M G + +T + L+ C P N
Sbjct: 117 TVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVS-PINLELGSSLH 175
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+V V + MY K G ++ A +FD M +G W A+++G+ +
Sbjct: 176 CSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLAT 235
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
LE +R M ++GV PD +T++ VL+ CAN+ +G + + F N + N L+
Sbjct: 236 NVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALI 295
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
++Y+R G + A+ VF M +RTLVSW +II G+ ++G A++ F M + + D
Sbjct: 296 NMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGT 355
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F L+ACSHAGL + GL+YF +MK+ Y++ P EH+ C+
Sbjct: 356 AFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCM 396
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 25/263 (9%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN- 96
SKS + W + + + L+A + +M +G P+ TF L CA
Sbjct: 7 SKSMNALSTPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPI 66
Query: 97 ----------------NVMVSTALLDMYAKFGRMDLATVVFD------VMRGCDFWTALL 134
V T L+ MY K +D A VF+ + C + AL+
Sbjct: 67 LGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVC--YNALV 124
Query: 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK 194
+G+V EA+ FR M GV + +T++ ++ C + L +G +H K F
Sbjct: 125 SGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFD 184
Query: 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+V V N + +Y + G + +A+++F M + L+SWN+++ G+A NG LE + M
Sbjct: 185 SDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNM 244
Query: 255 QKGVFKTDEVSFTGALTACSHAG 277
D V+ G L++C++ G
Sbjct: 245 DMNGVHPDPVTLVGVLSSCANLG 267
>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 907
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 134/260 (51%), Gaps = 24/260 (9%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDM 107
W S I+ +C+SG + EA F +M P N + ++
Sbjct: 362 WNSMIAGYCQSGRMSEALNLFRQM----------------------PVKNAVSWNTMISG 399
Query: 108 YAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
YA+ G MD AT +F+ M R W +L+ GF++ + +AL+ +M G +PD T
Sbjct: 400 YAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTF 459
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
L+ CAN+ L +G +H + K + +++ V N L+ +Y++ G ++ A +VF+ +
Sbjct: 460 ACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEG 519
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
L+SWNS+I G+A+NG+ EA F M DEV+F G L+ACSHAGL G+
Sbjct: 520 VDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDL 579
Query: 286 FDIMKKIYRVSPQIEHHGCI 305
F M + + + P EH+ C+
Sbjct: 580 FKCMIEGFAIEPLAEHYSCL 599
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 58/228 (25%)
Query: 77 NPSHITFVTLLSGCAD-------------FPSNNVMVSTALLDMYAKFGRMDLATVVFDV 123
+P+ +++VT+L G A P NV+ A++ Y + ++D A +F
Sbjct: 232 DPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKE 291
Query: 124 M--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG 181
+ C WT ++NG+V+ +EA E + M
Sbjct: 292 TPYKDCVSWTTMINGYVRVGKLDEAREVYNQM---------------------------- 323
Query: 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN 241
P +D V LM + G I+ A QVF +++KR + WNS+I G+ +
Sbjct: 324 -------PYKD----VAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQS 372
Query: 242 GFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
G + EAL F M + VS+ ++ + AG ++ + F+ M
Sbjct: 373 GRMSEALNLFRQMP----VKNAVSWNTMISGYAQAGEMDRATEIFEAM 416
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N+++ V+++ G + ARQ+F +M +R LVSWN++I G+ N V EA + F+LM +
Sbjct: 52 NSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMA----E 107
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIM 289
D S+ +T + G++E + F+++
Sbjct: 108 RDNFSWALMITCYTRKGMLEKARELFELV 136
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 103 ALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
+++ ++AK GR+ A +FD M R W ++ G++ + EEA + F +M E
Sbjct: 53 SMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLM----AER 108
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D + ++ L + VP K + N ++ Y++ G + A +VF
Sbjct: 109 DNFSWALMITCYTRKGMLEKARELFELVPD---KLDTACWNAMIAGYAKKGRFDDAEKVF 165
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
++M + LVS+NS++ G+ NG +G A+++F M +
Sbjct: 166 EKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAE 201
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G I+ A++VF + + ++NS++ FA NG V +A + F+ M + + VS+ +
Sbjct: 31 GKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMS----QRNLVSWNTMI 86
Query: 271 TACSHAGLIEDGLQYFDIMKK 291
H ++E+ + FD+M +
Sbjct: 87 AGYLHNNMVEEAHKLFDLMAE 107
>gi|218191361|gb|EEC73788.1| hypothetical protein OsI_08474 [Oryza sativa Indica Group]
Length = 418
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 130/218 (59%), Gaps = 6/218 (2%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
D PS + + +L+ MYA+F ++D A VVF M+ D W +++ K D+ +EALE
Sbjct: 52 DLPS--ISIENSLMGMYARFEQVDAAYVVFKGMQIKDIVSWNTMISCLAKSDHVDEALEL 109
Query: 150 FRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F ++ G+ PD++T++SV+ C+N L G +H Y+ K +V +CN L+ +Y+
Sbjct: 110 FSILHGGDGLVPDFVTVLSVVQACSNAGLLQQGQMLHGYIIKSGSLYDVSICNALISMYA 169
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFT 267
+ G I+F+ Q+F++M + +VSWNS+I + ++G +L FN +Q G + ++F
Sbjct: 170 KLGRIDFSEQIFEQMDIKDIVSWNSMINAYGIHGDGLSSLRIFNELQDDGTCSPNAITFV 229
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++ACSH+GL+ +G + F MK Y + P ++H+ +
Sbjct: 230 SLISACSHSGLVSEGYRCFQSMKNDYGIEPSMDHYASV 267
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW 231
C +L G +H ++ K + ++ + N+LM +Y+RF ++ A VF+ M + +VSW
Sbjct: 31 CTVSGSLKYGKGIHAHLIKMNDLPSISIENSLMGMYARFEQVDAAYVVFKGMQIKDIVSW 90
Query: 232 NSIIVGFAVNGFVGEALEYFNLMQKG-VFKTDEVSFTGALTACSHAGLIEDG 282
N++I A + V EALE F+++ G D V+ + ACS+AGL++ G
Sbjct: 91 NTMISCLAKSDHVDEALELFSILHGGDGLVPDFVTVLSVVQACSNAGLLQQG 142
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 137/255 (53%), Gaps = 8/255 (3%)
Query: 57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDL 116
+SG L ++ + Y ++ SHIT L + NV+ TA+L YA+ G +
Sbjct: 154 KSGFHLYVVVQTALLHSYASSVSHITLARQLFD--EMSERNVVSWTAMLSGYARSGDISN 211
Query: 117 ATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM-QISGVEPDYLTIISVLNVCA 173
A +F+ M R W A+L + F EA+ FR M + P+ +T++ VL+ CA
Sbjct: 212 AVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACA 271
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
TL + +H + ++D +V V N+L+D+Y + G +E A VF+ K++L +WNS
Sbjct: 272 QTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNS 331
Query: 234 IIVGFAVNGFVGEALEYFNLMQK---GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
+I FA++G EA+ F M K K D ++F G L AC+H GL+ G YFD+M
Sbjct: 332 MINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMT 391
Query: 291 KIYRVSPQIEHHGCI 305
+ + P+IEH+GC+
Sbjct: 392 NRFGIEPRIEHYGCL 406
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 130/219 (59%), Gaps = 11/219 (5%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
D S NVM++ YAK G M LA +FD + D W +++G+V+ ALE
Sbjct: 208 DLVSWNVMITA-----YAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALEL 262
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---VRVCNTLMDV 206
F MQ G +PD +T++S+L+ CA+ L +G +H + F N V + N L+D+
Sbjct: 263 FEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDM-FSRNGFPVVLGNALIDM 321
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G ++ A +VF M + + +WNSI+ G A++G V E+++ F M KG + DE++F
Sbjct: 322 YAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITF 381
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACSH G+++ G ++F++M+ YRV P I+H+GC+
Sbjct: 382 VAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCM 420
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 100/224 (44%), Gaps = 31/224 (13%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V W IS + R G L A F +M+ G P +T ++LLS CAD
Sbjct: 241 VSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSS 300
Query: 93 ----FPSNN--VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
F N V++ AL+DMYAK G M A VF MR D W +++ G +
Sbjct: 301 LSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVL 360
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-----LWMHRYVPKQDFKDNVRV 199
E+++ F M V PD +T ++VL C++ + G L H+Y + N++
Sbjct: 361 ESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKY----RVEPNIKH 416
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
++D+ R G ++ A + M + V W +++ V+G
Sbjct: 417 YGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHG 460
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 72/198 (36%), Gaps = 62/198 (31%)
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS--------- 208
V PD LT VL C + G+ +H +V K + + V N L+ +++
Sbjct: 108 VRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAA 167
Query: 209 ----------------------RFGCIEFARQVFQRMHKRTLVSWNSIIVGFA------- 239
R G I AR +F + LVSWN +I +A
Sbjct: 168 ALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMAL 227
Query: 240 -------------------VNGFVG-----EALEYFNLMQKGVFKTDEVSFTGALTACSH 275
++G+V ALE F MQ+ K D V+ L+AC+
Sbjct: 228 ARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACAD 287
Query: 276 AGLIEDGLQYFDIMKKIY 293
+G ++ G + + ++
Sbjct: 288 SGDLDVGQRLHSSLSDMF 305
>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Glycine max]
Length = 916
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 139/258 (53%), Gaps = 22/258 (8%)
Query: 70 RMRLYGTNPSHITFVTLLSGCADFPS------------------NNVMVSTALLDMYAKF 111
M++ G PS ITF +L+ C + + T+LL MY
Sbjct: 509 EMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDS 568
Query: 112 GRMDLATVVFD---VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
R+ A ++F ++ WTAL++G ++ + + AL +R M+ + + PD T ++V
Sbjct: 569 QRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTV 628
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH-KRT 227
L CA + +L G +H + F + + L+D+Y++ G ++ + QVF+ + K+
Sbjct: 629 LQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKD 688
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
++SWNS+IVGFA NG+ AL+ F+ M + D+V+F G LTACSHAG + +G Q FD
Sbjct: 689 VISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQIFD 748
Query: 288 IMKKIYRVSPQIEHHGCI 305
+M Y + P+++H+ C+
Sbjct: 749 VMVNYYGIEPRVDHYACM 766
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 121/263 (46%), Gaps = 19/263 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN---- 97
I V W IS H ++ EA F +M +G S T ++LS A + N
Sbjct: 179 IRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLL 238
Query: 98 -------------VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
+ V+++L++MY K D A VFD + + W A+L + + +
Sbjct: 239 VHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGF 298
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
+E F M G+ PD T S+L+ CA L +G +H + K+ F N+ V N
Sbjct: 299 LSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNA 358
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+Y++ G ++ A + F+ M R +SWN+IIVG+ A F M D
Sbjct: 359 LIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPD 418
Query: 263 EVSFTGALTACSHAGLIEDGLQY 285
EVS L+AC + ++E G Q+
Sbjct: 419 EVSLASILSACGNIKVLEAGQQF 441
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 128/258 (49%), Gaps = 20/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
+ W + + + ++G + F M G +P T+ ++LS CA F
Sbjct: 284 IVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSA 343
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++N+ V+ AL+DMYAK G + A F+ M D W A++ G+V+ + A
Sbjct: 344 IIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGA 403
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
FR M + G+ PD +++ S+L+ C N++ L G H K + N+ ++L+D+
Sbjct: 404 FSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDM 463
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
YS+ G I+ A + + M +R++VS N++I G+A+ E++ + MQ K E++F
Sbjct: 464 YSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKN-TKESINLLHEMQILGLKPSEITF 522
Query: 267 TGALTACSHAGLIEDGLQ 284
+ C + + GLQ
Sbjct: 523 ASLIDVCKGSAKVILGLQ 540
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 126/252 (50%), Gaps = 24/252 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
TV WT+ IS + ++G EA F +MR P + VT+L+
Sbjct: 115 TVSWTALISGYVQAGLPHEALHIFDKMRNSAV-PDQVALVTVLNA--------------- 158
Query: 105 LDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
Y G++D A +F M R W +++G K ++EEAL +F M GV+
Sbjct: 159 ---YISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKS 215
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
T+ SVL+ A++ L GL +H + KQ F+ ++ V ++L+++Y + + ARQVF
Sbjct: 216 SRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVF 275
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
+ ++ ++ WN+++ ++ NGF+ +E F M DE ++T L+ C+ +E
Sbjct: 276 DAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLE 335
Query: 281 DGLQ-YFDIMKK 291
G Q + I+KK
Sbjct: 336 VGRQLHSAIIKK 347
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 20/155 (12%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---- 95
S++ + V WT+ IS H ++ C A + MR +P TFVT+L CA S
Sbjct: 582 SSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDG 641
Query: 96 -------------NNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVK 139
+ + S+AL+DMYAK G + + VF+ + + W +++ GF K
Sbjct: 642 REIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAK 701
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
Y + AL+ F M S + PD +T + VL C++
Sbjct: 702 NGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSH 736
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 22/236 (9%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTALLDMYAK 110
F RM L G P ++ ++LS C + N+ ++L+DMY+K
Sbjct: 407 FRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSK 466
Query: 111 FGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G + A + M R AL+ G+ ++ +E++ MQI G++P +T S+
Sbjct: 467 CGDIKDAHKTYSSMPERSVVSVNALIAGYALKNT-KESINLLHEMQILGLKPSEITFASL 525
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT-LMDVYSRFGCIEFARQVFQRMHK-R 226
++VC + +GL +H + K+ T L+ +Y + A +F +
Sbjct: 526 IDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLK 585
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
++V W ++I G N AL + M+ D+ +F L AC+ + DG
Sbjct: 586 SIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDG 641
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 101/259 (38%), Gaps = 62/259 (23%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV--------- 98
W ++H S +L+ F G +P TF LS CA + ++
Sbjct: 18 WRVQGTKHYSSERVLQFYASFMN---SGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVI 74
Query: 99 ---MVST-----ALLDMYAKFGRMDLATVVFDVMRGCDF----WTALLNGFVKRDYFEEA 146
+ ST AL+ +YAK + A +F WTAL++G+V+ EA
Sbjct: 75 KSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEA 134
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F M+ S V PD + +++VLN
Sbjct: 135 LHIFDKMRNSAV-PDQVALVTVLN-----------------------------------A 158
Query: 207 YSRFGCIEFARQVFQRM--HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
Y G ++ A Q+FQ+M R +V+WN +I G A EAL +F+ M K K+
Sbjct: 159 YISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRS 218
Query: 265 SFTGALTACSHAGLIEDGL 283
+ L+A + + GL
Sbjct: 219 TLASVLSAIASLAALNHGL 237
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
E L+++ SG PD T L+ CA ++ L +G +H V K + L
Sbjct: 29 ERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGAL 88
Query: 204 MDVYSRFGCIEFARQVFQRM---HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+ +Y++ + AR +F H T VSW ++I G+ G EAL F+ M+
Sbjct: 89 IHLYAKCNSLTCARTIFASAPFPHLHT-VSWTALISGYVQAGLPHEALHIFDKMRNSAVP 147
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIM 289
D+V+ L A G ++D Q F M
Sbjct: 148 -DQVALVTVLNAYISLGKLDDACQLFQQM 175
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 140/275 (50%), Gaps = 24/275 (8%)
Query: 49 TSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDM- 107
T+ I + GC+ A F M P+ + + +++ C F N+V + + D
Sbjct: 312 TTLIGMYGECGCVGFARKVFDEM----PQPNLVAWNAVVTAC--FRGNDVSGAREIFDKM 365
Query: 108 --------------YAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFR 151
Y K G ++ A +F M D W+ ++ GF F E+ YFR
Sbjct: 366 LVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFR 425
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
+ + + P+ +++ VL+ C+ G +H +V K + V V N L+D+YSR G
Sbjct: 426 ELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCG 485
Query: 212 CIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
+ AR VF+ M KR++VSW S+I G A++G EA+ FN M + DE+SF L
Sbjct: 486 NVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLL 545
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSHAGLI++G YF MK++Y + P +EH+GC+
Sbjct: 546 YACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCM 580
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 28/182 (15%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
L+ G+ + D ++ F M G + PD + V+ AN R+L G MH K
Sbjct: 243 LVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKH 302
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
++ V TL+ +Y GC+ FAR+VF M + LV+WN+++ V A E F
Sbjct: 303 GLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIF 362
Query: 252 -----------NLMQKGVFKT----------------DEVSFTGALTACSHAGLIEDGLQ 284
N+M G K D+VS++ + SH G +
Sbjct: 363 DKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFS 422
Query: 285 YF 286
YF
Sbjct: 423 YF 424
>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
Length = 1157
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 151/293 (51%), Gaps = 25/293 (8%)
Query: 38 SKSTIDTTVQ-----WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD 92
++S +D +V W I + S +A + MR G P+ +TF LL CA
Sbjct: 717 AQSILDHSVHPVPLPWNILIRGYADSNTPKDALFVYRNMRNEGIRPNSLTFPFLLKACAA 776
Query: 93 -FPSN----------------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTAL 133
F + +V V+ L++ Y ++ A VFD M R W A+
Sbjct: 777 CFATKEGKQVHVEVIKYGLDCDVYVNNNLVNFYGSCKKILDACKVFDEMPERTVVSWNAV 836
Query: 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193
+ V+ EA+ YF M+ G EPD T++ +L +CA + LG+G W+H V ++
Sbjct: 837 ITSCVESLKLGEAIRYFLKMRDFGFEPDGTTMVLMLVICAEMGNLGLGRWIHSQVIERGL 896
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-N 252
N ++ L+D+Y++ G + +A+ VF RM ++ + +W+++I+G A +GF E LE F +
Sbjct: 897 VLNYQLGTALVDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLAQHGFAKEGLELFLD 956
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+M+ + + V+F G L ACSHAGL+ DG +YF M Y + P + H+G +
Sbjct: 957 MMRSSLIHPNYVTFLGVLCACSHAGLVSDGFRYFHEMGHTYGIKPMMVHYGAM 1009
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 21/201 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T V W + I+ S + EA F +MR +G P T V +L CA+ +
Sbjct: 829 TVVSWNAVITSCVESLKLGEAIRYFLKMRDFGFEPDGTTMVLMLVICAEMGNLGLGRWIH 888
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVKRDYFE 144
N + TAL+DMYAK G + A +VFD M+ + WT A++ G + + +
Sbjct: 889 SQVIERGLVLNYQLGTALVDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLAQHGFAK 948
Query: 145 EALEYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNT 202
E LE F +M+ S + P+Y+T + VL C++ + G + H K +
Sbjct: 949 EGLELFLDMMRSSLIHPNYVTFLGVLCACSHAGLVSDGFRYFHEMGHTYGIKPMMVHYGA 1008
Query: 203 LMDVYSRFGCIEFARQVFQRM 223
++D+ R G ++ A +M
Sbjct: 1009 MVDILGRAGLLKEAYNFITKM 1029
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 147/315 (46%), Gaps = 50/315 (15%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA--------- 91
+ V W + +C++ EA L F +M+ G P + T+L C
Sbjct: 212 AVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLRIGK 271
Query: 92 ---------------------------------------DFPSNNVMVSTALLDMYAKFG 112
+ P +++ STA++ YA+
Sbjct: 272 AIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARNR 331
Query: 113 RMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN 170
++++A +FD M D W+A+++G+V + EAL F MQ G+ D +T++SV++
Sbjct: 332 KVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVIS 391
Query: 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS 230
CAN+ +L W+H ++ + +CN L+D++++ G I A VF M + +++
Sbjct: 392 ACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLKNVIT 451
Query: 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
W S+I FA++G +L F M+ + +EV+F L AC HAGL+ +G F M
Sbjct: 452 WTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGRLLFSSMV 511
Query: 291 KIYRVSPQIEHHGCI 305
+ Y + P+ EH+GC+
Sbjct: 512 QQYGIEPKHEHYGCM 526
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 33/214 (15%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
V TAL YA G + VFD M R W +L+ + + ++EAL F M+ SG
Sbjct: 187 VGTALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSG 246
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV----------- 206
V PD L + +VL C ++R L IG +H Y+ D + + L+ +
Sbjct: 247 VVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAE 306
Query: 207 --------------------YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
Y+R +E AR +F M ++ +VSW+++I G+ + E
Sbjct: 307 KLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNE 366
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
AL FN MQ+ ++DE++ ++AC++ G ++
Sbjct: 367 ALSLFNGMQECGIRSDEITMLSVISACANLGSLD 400
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Query: 175 VRTLGIGLWM---HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW 231
R G G ++ H + D+ V L Y+ GC+ R+VF M R +VSW
Sbjct: 160 ARCEGAGAYVAATHALAVRTGALDDGFVGTALAGAYAACGCVRDTRKVFDGMAVRDVVSW 219
Query: 232 NSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
++ + EAL F M+ D++ L AC H
Sbjct: 220 GVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQLILATVLPACGH 263
>gi|293333548|ref|NP_001170485.1| uncharacterized protein LOC100384484 [Zea mays]
gi|238005588|gb|ACR33829.1| unknown [Zea mays]
gi|413920755|gb|AFW60687.1| hypothetical protein ZEAMMB73_143396 [Zea mays]
Length = 569
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 148/289 (51%), Gaps = 21/289 (7%)
Query: 37 NSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS- 95
S + T V WTS ++ + ++ EA F M G P+ IT ++ L C
Sbjct: 180 ESHGSSRTVVSWTSMVAGYVQNYYFGEAVALFGTMIAEGVLPNEITLISFLP-CLQGQEW 238
Query: 96 -----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNG 136
N+ ++ AL+ MY K G + +A +F+ M R W ++
Sbjct: 239 LDAGEMVHGFVIRLGFDANIPLANALIAMYGKCGSIPMAQTLFEGMPARSLASWNTMVAM 298
Query: 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
+ + EA+++FR M V D +T++SVL+ CA L G W+H +
Sbjct: 299 YEQHADVVEAIKFFRRMLTEKVGFDCVTLVSVLSACARSGALQTGKWVHELARNHGLDTD 358
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
R+ N L+D+Y++ G I AR VF + R++VSW+++I +A +G EAL+ F+LM+
Sbjct: 359 ARIGNVLVDMYAKCGEIASARNVFDCLRMRSVVSWSAMISAYANHGASEEALKLFSLMKN 418
Query: 257 GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ + +FT L AC H+GL+E+GL++F+ + Y++SP +EH+ C+
Sbjct: 419 EGVRPNSFTFTAVLVACGHSGLVEEGLKHFNSILSDYQMSPTLEHYACM 467
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 21/236 (8%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTALLDMYAK 110
+ RMR G P H T+ +L CA + + V +AL+ MY +
Sbjct: 108 YKRMRAAGVAPDHYTYPIVLPACAAARELWLGRAVHGDVVRFALAGDGFVHSALITMYFQ 167
Query: 111 FGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
G + A +VF G WT+++ G+V+ YF EA+ F M GV P+ +T+I
Sbjct: 168 EGEVADAELVFAESHGSSRTVVSWTSMVAGYVQNYYFGEAVALFGTMIAEGVLPNEITLI 227
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S L L G +H +V + F N+ + N L+ +Y + G I A+ +F+ M R
Sbjct: 228 SFLPCLQGQEWLDAGEMVHGFVIRLGFDANIPLANALIAMYGKCGSIPMAQTLFEGMPAR 287
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+L SWN+++ + + V EA+++F M D V+ L+AC+ +G ++ G
Sbjct: 288 SLASWNTMVAMYEQHADVVEAIKFFRRMLTEKVGFDCVTLVSVLSACARSGALQTG 343
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 8/175 (4%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDV--MRGCDFWTALL--NGFVKRDYFEEALEYF 150
S N +T+LL A + A VFD +R W LL + + + + L +
Sbjct: 50 SANPAFATSLLAGVAP-ASLAYARRVFDATPVRDAYMWNTLLRAHSHSQLSHAADTLALY 108
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+ M+ +GV PD+ T VL CA R L +G +H V + + V + L+ +Y +
Sbjct: 109 KRMRAAGVAPDHYTYPIVLPACAAARELWLGRAVHGDVVRFALAGDGFVHSALITMYFQE 168
Query: 211 GCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTD 262
G + A VF H RT+VSW S++ G+ N + GEA+ F M +GV +
Sbjct: 169 GEVADAELVFAESHGSSRTVVSWTSMVAGYVQNYYFGEAVALFGTMIAEGVLPNE 223
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T W + I H ++G +A +M G P T +LL CA S
Sbjct: 415 TVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIH 474
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+ V T+LL Y G+ A V+FD M+ + W A+++G+ +
Sbjct: 475 GYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPY 534
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E+L FR G++ + I+SV C+ + L +G H YV K ++ V +++
Sbjct: 535 ESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSII 594
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ GCI+ +R+VF + + + SWN+IIV ++G EA+E + M+K D
Sbjct: 595 DMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRF 654
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++ G L AC HAGL+E+GL+YF M+ + P++EH+ C+
Sbjct: 655 TYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACL 695
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 125/259 (48%), Gaps = 39/259 (15%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTN--PSHITFVTLLSGCADFPSN------- 96
+QW + +S + R+G + F + + T+ P + TF +++ C
Sbjct: 111 IQWNALVSGYTRNGLYGDVVKVFMDL-VSDTDFQPDNFTFPSVIKACGGILDVRLGEVIH 169
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALL-----NGFVK 139
+V V AL+ MY K G +D A VFD M + W +++ NGF
Sbjct: 170 GMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGF-S 228
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
RD F+ +E ++ G+ PD +T++++L VCA + IG+ +H K + V V
Sbjct: 229 RDSFDLLME---MLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMV 285
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK--- 256
N ++ +YS+ G + A+ F + + + +VSWN++I F++ G V EA FNL+Q+
Sbjct: 286 NNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEA---FNLLQEMQI 342
Query: 257 --GVFKTDEVSFTGALTAC 273
K +EV+ L AC
Sbjct: 343 QGEEMKANEVTILNVLPAC 361
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 104/202 (51%), Gaps = 6/202 (2%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF-RV 152
N+ +++T L+ MYA G + +VFD M + W AL++G+ + + + ++ F +
Sbjct: 77 NDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDL 136
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
+ + +PD T SV+ C + + +G +H V K +V V N L+ +Y + G
Sbjct: 137 VSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGA 196
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM--QKGVFKTDEVSFTGAL 270
++ A +VF M + LVSWNS+I F+ NGF ++ + M ++G+ D V+ L
Sbjct: 197 VDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLL-PDVVTVVTIL 255
Query: 271 TACSHAGLIEDGLQYFDIMKKI 292
C+ G ++ G+ + K+
Sbjct: 256 PVCAGEGEVDIGMGIHGLAVKL 277
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 22/222 (9%)
Query: 75 GTNPSHITFVTLLSGCADFP-----------------SNNVMVSTALLDMYAKFGRMDLA 117
G P +T VT+L CA S VMV+ A++ MY+K G ++ A
Sbjct: 243 GLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEA 302
Query: 118 TVVF--DVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVE--PDYLTIISVLNVCA 173
+ F + + W +++ F EA + MQI G E + +TI++VL C
Sbjct: 303 QMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACL 362
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
+ L +H Y + F+ +V + N + Y++ G + A +VF + +T+ SWN+
Sbjct: 363 DKLQLRSLKELHGYSFRHCFQ-HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNA 421
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
+I G A NG +AL M + D + + L AC+H
Sbjct: 422 LIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAH 463
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT-LMDVYSRFGCIEFARQVFQRMHKR 226
+L C N + + G +H++V N V NT L+ +Y+ G +R VF M +
Sbjct: 49 LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTACS 274
L+ WN+++ G+ NG G+ ++ F +L+ F+ D +F + AC
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACG 157
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 149/312 (47%), Gaps = 50/312 (16%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-----DFPS--- 95
V W S I+ + ++G EA F MR G T V+LL C+ +F
Sbjct: 175 NVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVH 234
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKR---- 140
+++++ AL+DMY K G + +A FD+M + WT++L KR
Sbjct: 235 SHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASID 294
Query: 141 ---DYFE------------------------EALEYFRVMQISGVEPDYLTIISVLNVCA 173
D+FE EAL+ + M++ G+ PD T+ +VL+ C
Sbjct: 295 AARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACG 354
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
+ L G +H + V + N+L+D+Y+R G ++ A +F M + ++SWN+
Sbjct: 355 QLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNA 414
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
II A++G +AL +F M F DE++F L+AC+H GL+E G YF M+ +Y
Sbjct: 415 IIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVY 474
Query: 294 RVSPQIEHHGCI 305
V P +EH+ C+
Sbjct: 475 NVKPGVEHYACM 486
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 118/293 (40%), Gaps = 50/293 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
+ S I +C S C EA M G P+ T LL CA +
Sbjct: 78 YNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVV 137
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
V V ALL YA G + + FD M R W +++NG+ + EA
Sbjct: 138 KLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACS 197
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M+ G+ D T++S+L C+ L G +H ++ + + ++ + N L+D+Y
Sbjct: 198 LFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYG 257
Query: 209 RFG-------------------------------CIEFARQVFQRMHKRTLVSWNSIIVG 237
+ G I+ AR F+++ +++++SWN++I
Sbjct: 258 KCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISC 317
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
+ G EAL+ +N M+ DE + L+AC G + G D ++
Sbjct: 318 YVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIR 370
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 21/222 (9%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
+ + W + IS + + G EA + RM+L G P T +LS C
Sbjct: 307 SIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIH 366
Query: 92 -----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+F + V + +LLDMYA+ G++D A +F M + W A++ +
Sbjct: 367 DCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQ 426
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNVRVCNTL 203
+AL +FR M PD +T +++L+ C + L G + + + + K V +
Sbjct: 427 DALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACM 486
Query: 204 MDVYSRFGCIEFARQVFQRMHKRT-LVSWNSIIVGFAVNGFV 244
+D+ R G + A + + M R +V W +++ ++G +
Sbjct: 487 VDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHI 528
>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
Length = 1122
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 135/257 (52%), Gaps = 19/257 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSNNV-----------------MVSTALLDMYAK 110
F M+ G + + + T+LS P ++ ++ AL+DMY+K
Sbjct: 325 FREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSK 384
Query: 111 FGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G +D A F + WTAL+ G+V+ EEAL+ F M+ +G+ PD T S+
Sbjct: 385 CGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSI 444
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
+ +++ +G+G +H Y+ + +K +V + L+D+Y++ GC++ A + F M +R
Sbjct: 445 IKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNS 504
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
+SWN++I +A G A++ F M F D V+F L ACSH GL ++ ++YF +
Sbjct: 505 ISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHL 564
Query: 289 MKKIYRVSPQIEHHGCI 305
MK Y +SP EH+ C+
Sbjct: 565 MKHQYSISPWKEHYACV 581
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 117/268 (43%), Gaps = 27/268 (10%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS--GCADFPS---------- 95
WT + H +G +A F M G P +T T+L+ GC PS
Sbjct: 108 WTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCT-VPSLHPFAIKFGL 166
Query: 96 -NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+V V LLD Y K G + A VF M D + A++ G K +AL+ F
Sbjct: 167 DTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAA 226
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M+ +G+ + T S+L V A + L +G +H V + NV V N+L+D YS+ C
Sbjct: 227 MRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDC 286
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ R++F M +R VS+N II +A N L F MQK F + + L+
Sbjct: 287 LDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSV 346
Query: 273 CS-----------HAGLIEDGLQYFDIM 289
HA L+ GL D++
Sbjct: 347 AGSLPDVHIGKQIHAQLVLLGLASEDLL 374
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 9/185 (4%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVF--DVMRGCDFWTALLNGFVKRDYFEEALEYF 150
P N+ +L Y+ G + A +F R WT ++ +AL F
Sbjct: 69 MPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLF 128
Query: 151 RVMQISGVEPDYLTIISVLNVCA-NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
R M GV PD +T+ +VLN+ V +L H + K +V VCNTL+D Y +
Sbjct: 129 RAMLGEGVIPDRVTVTTVLNLPGCTVPSL------HPFAIKFGLDTHVFVCNTLLDAYCK 182
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G + AR+VF MH + V++N++++G + G +AL+ F M++ +F+
Sbjct: 183 HGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSI 242
Query: 270 LTACS 274
LT +
Sbjct: 243 LTVAA 247
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 145/285 (50%), Gaps = 31/285 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
+ WT+ IS ++ C A F RM PS T ++L+ CA
Sbjct: 314 ISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGY 373
Query: 92 --------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
D PS N +V+ MYAK G ++ + VFD M D W A+++G +
Sbjct: 374 ILRQRIKLDIPSQNSLVT-----MYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNG 428
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
+ +AL F M+ + PD +T++S+L CA++ L G W+H +V K + +
Sbjct: 429 HLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDT 488
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLMQKGVFK 260
L+D+YS+ G + A++ F RM ++ LVSW+SII G+ +G AL Y + + G+ +
Sbjct: 489 ALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGI-Q 547
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ V + L+ACSH GL++ GL +F M K + + P++EH CI
Sbjct: 548 PNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACI 592
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 118/248 (47%), Gaps = 16/248 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WT+ I + R+G A + MR G PS +T + LLSG +
Sbjct: 115 VPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQ 174
Query: 95 ---SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
++V ++ ++L++Y K GR++ A +F++M D W +L++G+ + E L+
Sbjct: 175 YGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQL 234
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
M+ G+EPD T S+++ A LG+G +H ++ + + + + +L+ +Y +
Sbjct: 235 LIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLK 294
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G + A ++F+ M + ++SW ++I G N A+ F M K +
Sbjct: 295 CGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASV 354
Query: 270 LTACSHAG 277
L AC+ G
Sbjct: 355 LAACAELG 362
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 121/250 (48%), Gaps = 22/250 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
T + + I+R +G + L ++ M T P TF +L+ C
Sbjct: 12 ATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFH 71
Query: 92 -----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
D S++ ++T+L++ Y+KFG A VFD M R WT ++ + + +
Sbjct: 72 QRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHD 131
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
A + +M+ G++P +T++ +L+ + L +H V + F +V + N+++
Sbjct: 132 VAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDVALANSML 188
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+VY + G +E A+ +F+ M R ++SWNS++ G+A G + E L+ M+ + D+
Sbjct: 189 NVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQ 248
Query: 265 SFTGALTACS 274
+F ++A +
Sbjct: 249 TFGSLVSAAA 258
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 8/161 (4%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
+ A++N F + L + M + PD T S++ C ++ GL H+ V
Sbjct: 16 YNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVI 75
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
+ + + +L++ YS+FG + AR+VF M R +V W ++I + G A
Sbjct: 76 VDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFS 135
Query: 250 YFNLMQKGVFKTDEVSFTGALTA--------CSHAGLIEDG 282
+N+M++ + V+ G L+ C HA +I+ G
Sbjct: 136 MYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYG 176
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 148/276 (53%), Gaps = 14/276 (5%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
I TV T +RH RSG + + ++ + + + S + + + C D
Sbjct: 96 ILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSS--ALINMYASCMDMEMADKIYS 153
Query: 95 ---SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
+++ STA++ YAK G++++A +F+ M D W+A+++ + + + E L
Sbjct: 154 GMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNL 213
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F MQ GV PD +T++SV++ CAN+ +L W+H V F + +CN L+D++S+
Sbjct: 214 FNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSK 273
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G + A +F M ++ +++W S+I FA++G AL F M+ + + V+F
Sbjct: 274 CGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVL 333
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L AC HAGL+ +G F+ M + YR+ P+ EH+GC+
Sbjct: 334 LYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCM 369
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 7/200 (3%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG 157
V TAL+ YA R+ A VFD M D W +L+ + + E L M+ S
Sbjct: 30 VGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNKMKRSR 89
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
V PD + + +VL+ C + R L G +H Y+ D + R+ + L+++Y+ +E A
Sbjct: 90 VVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMDMEMAD 149
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+++ M ++ LVS +++ G+A NG + A FN M + D VS++ ++A +
Sbjct: 150 KIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMA----EKDVVSWSAMISAYAENN 205
Query: 278 LIEDGLQYFDIMKKIYRVSP 297
+ L F+ M+ VSP
Sbjct: 206 QPSEVLNLFNKMQGC-GVSP 224
>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 808
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 149/284 (52%), Gaps = 24/284 (8%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGT---NPSHITFVTLLSGCADFPS-- 95
+ V W++ + G +LEA F M G +P+ + + L CA+
Sbjct: 295 AVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLC 352
Query: 96 ---------------NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFV 138
++ +LL MYAK G +D AT +FD V++ ++AL++G+V
Sbjct: 353 LGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYV 412
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
+ +EA FR MQ V+PD T++S++ C+++ L G H V +
Sbjct: 413 QNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETS 472
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
+CN L+D+Y++ G I+ +RQ+F M R +VSWN++I G+ ++G EA F M+
Sbjct: 473 ICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQA 532
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
+ D+V+F ++ACSH+GL+ +G ++F +M Y ++P++EH+
Sbjct: 533 CEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHY 576
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 7/192 (3%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+ V+V TALLDMYAK G + A+ VF+ M R W+AL+ GFV EA F+ M
Sbjct: 266 DGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDM 325
Query: 154 QISG---VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
G + P ++ S L CAN+ L +G +H + K ++ N+L+ +Y++
Sbjct: 326 LAQGLCFLSPT--SVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKA 383
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G I+ A +F +M + VS+++++ G+ NG EA F MQ + D + +
Sbjct: 384 GLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLI 443
Query: 271 TACSHAGLIEDG 282
ACSH ++ G
Sbjct: 444 PACSHLAALQHG 455
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
++ VSTAL+D+YAK A VF M D W A+L G+ + + + +MQ
Sbjct: 163 DLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQ 222
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK----QDFKDNVRVCNTLMDVYSRF 210
P+ T++++L + A L G +H Y + D KD V V L+D+Y++
Sbjct: 223 -DDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKC 281
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGA 269
G + +A +VF+ M R V+W++++ GF + G + EA F +++ +G+ S A
Sbjct: 282 GHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASA 341
Query: 270 LTACSHAGLIEDGLQYFDIMKK 291
L AC++ + G Q ++ K
Sbjct: 342 LRACANLSDLCLGKQLHALLAK 363
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 2/146 (1%)
Query: 112 GRMDLATVVFDVMR--GCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
G + LA +FD + G + AL+ + R Y + + +P+ T VL
Sbjct: 77 GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136
Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
C+ + L +H + + ++ V L+DVY++ A VF+RM R +V
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVV 196
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQ 255
+WN+++ G+A++G + + LMQ
Sbjct: 197 AWNAMLAGYALHGKYSDTIACLLLMQ 222
>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 130/218 (59%), Gaps = 4/218 (1%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ +V V A++ Y + G M A +FD M + WT +++GF + + EAL+
Sbjct: 135 EMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKM 194
Query: 150 FRVMQI-SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M+ V+P+++T++SVL CAN+ L IG + Y + F DN+ VCN +++YS
Sbjct: 195 FLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYS 254
Query: 209 RFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
+ G I+ A+++F+ + ++R L SWNS+I A +G EAL F M + K D V+F
Sbjct: 255 KCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFV 314
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L AC H G++ G + F M++++++SP++EH+GC+
Sbjct: 315 GLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCM 352
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 101/254 (39%), Gaps = 54/254 (21%)
Query: 48 WTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFPS----------- 95
WT+ IS ++G EA F M + P+HIT V++L CA+
Sbjct: 175 WTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYA 234
Query: 96 ------NNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEA 146
+N+ V A ++MY+K G +D+A +F+ + R W +++ +EA
Sbjct: 235 RENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEA 294
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F M G +PD +T + +L C + + V Q+ ++ + +
Sbjct: 295 LTLFAQMLREGEKPDAVTFVGLLLACVHGGMV---------VKGQELFKSMEEVHKISPK 345
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
+GC+ + G VG+ E ++L++ K D V +
Sbjct: 346 LEHYGCM------------------------IDLLGRVGKLQEAYDLIKTMPMKPDAVVW 381
Query: 267 TGALTACSHAGLIE 280
L ACS G +E
Sbjct: 382 GTLLGACSFHGNVE 395
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 11/175 (6%)
Query: 127 CDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT---IISVLNVCANVRTLGIGL 182
C F + L+ + E++ + ++ G+ P + T I + ++ R L +
Sbjct: 39 CTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRL-- 96
Query: 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG 242
+H + F+ + C TL+ Y++ G + AR+VF M KR + WN++I G+ G
Sbjct: 97 -LHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRG 155
Query: 243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSP 297
+ A+E F+ M + + S+T ++ S G + L+ F M+K V P
Sbjct: 156 DMKAAMELFDSMP----RKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKP 206
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 155/322 (48%), Gaps = 57/322 (17%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----- 95
+ V W S I+ + ++G +A F M G P IT +++S CA + +
Sbjct: 213 AVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGL 272
Query: 96 -------------NNVMVSTALLDMYAKFGRMDLATVVFDVM------------------ 124
N++++ AL+DMYAK R++ A +VFD M
Sbjct: 273 QIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARA 332
Query: 125 ---------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
+ W AL+ G+ + EEA+ F +++ + P + T ++L
Sbjct: 333 ASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLL 392
Query: 170 NVCANVRTLGIGLWMHRYVPKQDF------KDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
N CAN+ L +G H + K F + ++ V N+L+D+Y + G +E VF+RM
Sbjct: 393 NACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERM 452
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
+R +VSWN++IVG+A NG+ ALE F M K D V+ G L+ACSHAGL+E+G
Sbjct: 453 VERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGR 512
Query: 284 QYFDIMKKIYRVSPQIEHHGCI 305
+YF M+ ++P +H C+
Sbjct: 513 RYFHSMRTELGLAPMKDHFTCM 534
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 2/194 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYF 150
P N A+L + KFG++D A VF M D W A+++GF + D FEEAL +F
Sbjct: 80 MPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFF 139
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M + + S L+ CA + L +G+ +H + K + +V + + L+D+YS+
Sbjct: 140 VDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKC 199
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G + A++ F M R +VSWNS+I + NG G+ALE F +M + DE++ +
Sbjct: 200 GVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVV 259
Query: 271 TACSHAGLIEDGLQ 284
+AC+ I +GLQ
Sbjct: 260 SACASWSAIREGLQ 273
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N ++ V ++FG ++ A VF+ M + SWN+++ GFA + EAL +F M F
Sbjct: 89 NAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFV 148
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+E SF AL+AC+ + G+Q ++ K
Sbjct: 149 LNEYSFGSALSACAGLTDLNMGIQIHALISK 179
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 144/277 (51%), Gaps = 19/277 (6%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----------- 96
W + I H S EA L + MR P TF LL C++F S
Sbjct: 94 WNTLIRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVL 153
Query: 97 ------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
N+ V L+ Y+ + A VFD + R WT +++G+ + EALE
Sbjct: 154 KFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNEALE 213
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M + G+EP+ T+ SVL+ CA L +G +H ++ ++ + V + L+ +Y+
Sbjct: 214 LFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVHMYA 273
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G I A+++F + +R +WN++I G AV+G EAL+ F ++K ++++F G
Sbjct: 274 KNGAILMAQKLFDTISERNTATWNAMICGLAVHGHAKEALDRFWKLEKEQIVPNDITFVG 333
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+AC HAGL+ G + F +MK++Y + P+IEH+GC+
Sbjct: 334 VLSACCHAGLLSVGRKIFHLMKRVYGIEPKIEHYGCM 370
>gi|15239985|ref|NP_199192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75262420|sp|Q9FG85.1|PP415_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g43790
gi|10177948|dbj|BAB11307.1| unnamed protein product [Arabidopsis thaliana]
gi|332007627|gb|AED95010.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 460
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 127/212 (59%), Gaps = 10/212 (4%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKR---DYFEEALEYFRVMQ 154
V AL+ YA G++ A +F+ +R D W LL + D EE L F MQ
Sbjct: 152 VQAALVGFYANCGKLREARSLFERIREPDLATWNTLLAAYANSEEIDSDEEVLLLFMRMQ 211
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
V P+ L++++++ CAN+ G+W H YV K + N V +L+D+YS+ GC+
Sbjct: 212 ---VRPNELSLVALIKSCANLGEFVRGVWAHVYVLKNNLTLNQFVGTSLIDLYSKCGCLS 268
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLMQKGVFKTDEVSFTGALTAC 273
FAR+VF M +R + +N++I G AV+GF E +E Y +L+ +G+ D +F ++AC
Sbjct: 269 FARKVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIELYKSLISQGLVP-DSATFVVTISAC 327
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH+GL+++GLQ F+ MK +Y + P++EH+GC+
Sbjct: 328 SHSGLVDEGLQIFNSMKAVYGIEPKVEHYGCL 359
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 63 EAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------------NNV----MVSTALL 105
E L F RM++ P+ ++ V L+ CA+ NN+ V T+L+
Sbjct: 202 EVLLLFMRMQV---RPNELSLVALIKSCANLGEFVRGVWAHVYVLKNNLTLNQFVGTSLI 258
Query: 106 DMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
D+Y+K G + A VFD M R + A++ G + +E +E ++ + G+ PD
Sbjct: 259 DLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIELYKSLISQGLVPDSA 318
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T + ++ C++ + GL + + + V L+D+ R G +E A + ++
Sbjct: 319 TFVVTISACSHSGLVDEGLQIFNSMKAVYGIEPKVEHYGCLVDLLGRSGRLEEAEECIKK 378
Query: 223 MH-KRTLVSWNSIIVGFAVNG 242
M K W S + +G
Sbjct: 379 MPVKPNATLWRSFLGSSQTHG 399
>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 155/337 (45%), Gaps = 53/337 (15%)
Query: 21 RNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH 80
R +K+ ++ QT + ++ V W IS RSG L+A L F M L G P
Sbjct: 152 RKGRVKETKELFYQTRDLGVELNL-VSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDG 210
Query: 81 ITFVTLLSGCADFP-----------------SNNVMVSTALLDMYAK----------FGR 113
+ ++L D + V +AL+DMY K F
Sbjct: 211 TSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNE 270
Query: 114 MDLATV---------------------VFDVMRGCDF----WTALLNGFVKRDYFEEALE 148
MD V VF +G D WT+++ + EALE
Sbjct: 271 MDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALE 330
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
FR MQI GV+P+ +TI +L C N+ L G H + + ++V V + L+D+Y+
Sbjct: 331 LFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYA 390
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G + +R F M R LVSWNS++ G+A++G EA+ F LMQ+ K D VSFT
Sbjct: 391 KCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTC 450
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+AC+ GL E+G YFD M + + V ++EH+ C+
Sbjct: 451 VLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCM 487
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 9/211 (4%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR--GCDF----WTALLNGFVKRDYFEEA 146
P V+ S+AL+ +A+ GR+ +F R G + W +++GF + + +A
Sbjct: 135 LPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDA 194
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ F+ M + G++PD ++ SVL ++ +G+ +H YV KQ + V + L+D+
Sbjct: 195 VLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDM 254
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + C VF M + + + N+++ G + NG V ALE F KG+ + VS+
Sbjct: 255 YGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQF-KGM-DLNVVSW 312
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSP 297
T + +CS G + L+ F M +I V P
Sbjct: 313 TSMIASCSQNGKDMEALELFREM-QIEGVKP 342
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%)
Query: 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
F K ++F + F M G+ PD + +V+ CA + L G MH + +
Sbjct: 49 FSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLD 108
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
V ++L+ +Y +F ++ AR VF ++ + +V+ +++I FA G V E E F +
Sbjct: 109 SVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRD 168
Query: 257 GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
+ + VS+ G ++ + +G D + F M
Sbjct: 169 LGVELNLVSWNGMISGFNRSGSYLDAVLMFQNM 201
>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
Length = 681
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 139/280 (49%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WT+ I + + G EA L F +M + L C +
Sbjct: 173 VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSS 232
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD---FWTALLNGFVKRDYFEE 145
+++ V AL DMY+K G M+ A+ VF + C +T L++G+V+ + E+
Sbjct: 233 VVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 292
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
L F ++ G+EP+ T S++ CAN L G +H V K +F ++ V + L+D
Sbjct: 293 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 352
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y + G +E A Q F + T ++WNS++ F +G +A+++F M K + ++
Sbjct: 353 MYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAIT 412
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F LT CSHAGL+E+GL YF M K Y V P EH+ C+
Sbjct: 413 FISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCV 452
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 126/273 (46%), Gaps = 21/273 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WT+ IS ++ EA F MR+ G P+ F + + CA S
Sbjct: 72 VSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCL 131
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+ + V + L DMY+K G M A VF+ M D WTA+++G+ K FEEA
Sbjct: 132 ALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEA 191
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F+ M V D + S L C ++ G +H V K F+ ++ V N L D+
Sbjct: 192 LLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDM 251
Query: 207 YSRFGCIEFARQVFQ-RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
YS+ G +E A VF R +VS+ +I G+ + + L F +++ + +E +
Sbjct: 252 YSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFT 311
Query: 266 FTGALTACSHAGLIEDGLQ-YFDIMKKIYRVSP 297
F+ + AC++ +E G Q + +MK + P
Sbjct: 312 FSSLIKACANQAALEQGTQLHAQVMKINFDEDP 344
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 2/176 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
++ L++MY+K G +D A +FD M R WTA+++G + F EA+ F M+I G
Sbjct: 42 LTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICG 101
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
P S + CA++ ++ +G MH K + V + L D+YS+ G + A
Sbjct: 102 EVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDAC 161
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+VF+ M + VSW ++I G++ G EAL F M D+ L AC
Sbjct: 162 KVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGAC 217
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D + V+ A + L G +H + + + N L+++YS+ G ++ A ++F
Sbjct: 4 DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280
M +R LVSW ++I G + N EA+ F M+ + +F+ A+ AC+ G IE
Sbjct: 64 DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123
Query: 281 DGLQ 284
G Q
Sbjct: 124 MGKQ 127
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 18/206 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
T + W S +S + G +A F RM G P+ ITF++LL+GC S+ +V
Sbjct: 374 TEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGC----SHAGLVEEG 429
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
L Y+ MD + V+ G + ++ +++ + +EA E+ M EP+
Sbjct: 430 LDYFYS----MD---KTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPF---EPNAF 479
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
S L C +G + K + K N L ++Y+ E R V RM
Sbjct: 480 GWCSFLGACRIHGDKEMGKLAAEKLVKLEPK-NSGALVLLSNIYANERQWEDVRSVRMRM 538
Query: 224 HK---RTLVSWNSIIVGFAVNGFVGE 246
+ L ++ + VG+ + F E
Sbjct: 539 RDGNVKKLPGYSWVDVGYKTHVFGAE 564
>gi|15231572|ref|NP_189286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273843|sp|Q9LRV2.1|PP256_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g26540
gi|9293933|dbj|BAB01836.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643655|gb|AEE77176.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 700
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 136/264 (51%), Gaps = 22/264 (8%)
Query: 63 EAALEF-TRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTAL 104
+ AL+F T MR N ++T V +L+ C+ NV+V+ AL
Sbjct: 377 DEALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANAL 436
Query: 105 LDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
LDMY K G + A + F M R W ALL G + E+AL +F MQ+ +P
Sbjct: 437 LDMYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQVEA-KPS 495
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
T+ ++L CAN+ L +G +H ++ + +K +V + ++D+YS+ C ++A +VF+
Sbjct: 496 KYTLATLLAGCANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFK 555
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
R L+ WNSII G NG E E F L++ K D V+F G L AC G +E
Sbjct: 556 EAATRDLILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQACIREGHVEL 615
Query: 282 GLQYFDIMKKIYRVSPQIEHHGCI 305
G QYF M Y +SPQ+EH+ C+
Sbjct: 616 GFQYFSSMSTKYHISPQVEHYDCM 639
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 128/303 (42%), Gaps = 63/303 (20%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV----- 98
+ V W + R+ G EA + F +M P + T +++ C+ + V
Sbjct: 227 SDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIH 286
Query: 99 ------------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF----------------- 129
+VST++ DMY K R++ A VFD R D
Sbjct: 287 AIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTR 346
Query: 130 ----------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173
W A+L G+V ++EAL++ +M+ D +T++ +LNVC+
Sbjct: 347 EARELFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCS 406
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-RTLVSWN 232
+ + +G H ++ + + NV V N L+D+Y + G ++ A F++M + R VSWN
Sbjct: 407 GISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWN 466
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS-----------HAGLIED 281
+++ G A G +AL +F MQ K + + L C+ H LI D
Sbjct: 467 ALLTGVARVGRSEQALSFFEGMQVEA-KPSKYTLATLLAGCANIPALNLGKAIHGFLIRD 525
Query: 282 GLQ 284
G +
Sbjct: 526 GYK 528
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 118/263 (44%), Gaps = 23/263 (8%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFP---------- 94
W + I+ ++G E F RM G + +F +L C D
Sbjct: 130 WNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAVV 189
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFD-VMRGCDF-WTALLNGFVKRDYFEEALE 148
S NV + T+++D+Y K M A VFD ++ D W ++ +++ + +EA+
Sbjct: 190 KYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVV 249
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M V P T+ SV+ C+ L +G +H K + V ++ D+Y
Sbjct: 250 MFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYV 309
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ +E AR+VF + + L SW S + G+A++G EA E F+LM + + VS+
Sbjct: 310 KCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREARELFDLMP----ERNIVSWNA 365
Query: 269 ALTACSHAGLIEDGLQYFDIMKK 291
L HA ++ L + +M++
Sbjct: 366 MLGGYVHAHEWDEALDFLTLMRQ 388
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
N ++ Y + GC++ AR++F+ M +R SWN++I A NG E F M + +
Sbjct: 100 NRAIEAYGKCGCVDDARELFEEMPERDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVR 159
Query: 261 TDEVSFTGALTACSHAGLIED 281
E SF G L +C GLI D
Sbjct: 160 ATETSFAGVLKSC---GLILD 177
>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
Length = 582
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 21/281 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-------- 96
TV + S +S + + + + + F MR G + +T + L+ C P N
Sbjct: 78 TVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCG-IPGNLGLGMCVH 136
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+ V LL MY K G +D +FD M +G W A++NG+ +
Sbjct: 137 GFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLAN 196
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
LE ++ M+ G PD LT++ VL+ CA++ L +G + R + F N + N L+
Sbjct: 197 NVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALV 256
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
++Y+R G ++ AR +F M +++VSW +II G+ ++G A+ F+ M +G K D
Sbjct: 257 NMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGT 316
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F L+ACSHAGL GL YF +M++ Y + P EH+ C+
Sbjct: 317 AFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCM 357
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 103/201 (51%), Gaps = 12/201 (5%)
Query: 88 SGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD------VMRGCDFWTALLNGFVKRD 141
+GC P V T+L+ MY K +D A +FD + C + +LL+G+
Sbjct: 39 TGCLLEP----FVQTSLISMYGKCSLIDNARKLFDENPQSRKLTVC--YNSLLSGYALNS 92
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
++ + F M+ GVE + +T++ ++ C LG+G+ +H + K + V N
Sbjct: 93 RVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGN 152
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+ +Y + G I+ R++F M ++ L++WN++I G+A NG LE + M+ F
Sbjct: 153 CLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCP 212
Query: 262 DEVSFTGALTACSHAGLIEDG 282
D ++ G L++C+H G + G
Sbjct: 213 DPLTLVGVLSSCAHLGALSVG 233
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M SG P+ T + CA + G +H +V K V +L+ +Y +
Sbjct: 1 MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60
Query: 213 IEFARQVFQR--MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
I+ AR++F ++ V +NS++ G+A+N V + + F M++ + + V+ G +
Sbjct: 61 IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120
Query: 271 TACSHAGLIEDGL 283
C G + G+
Sbjct: 121 QPCGIPGNLGLGM 133
>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 840
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 142/251 (56%), Gaps = 21/251 (8%)
Query: 76 TNPSHITFVTLLSGCADFP-----------------SNNVMVSTALLDMYAKFGRMDLAT 118
T P+ TF T+L+ C ++V V ++LLDMYAK G++ A
Sbjct: 361 TEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEAR 420
Query: 119 VVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR 176
VF+ + D TA+++G+ + EEALE FR +Q G++ +Y+T VL + +
Sbjct: 421 TVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLA 480
Query: 177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIV 236
L +G +H +V + + V + N+L+D+YS+ G + ++R++F M++RT++SWN+++V
Sbjct: 481 ALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLV 540
Query: 237 GFAVNGFVGEALEYFNLMQKGV-FKTDEVSFTGALTACSHAGLIEDGLQYF-DIMKKIYR 294
G++ +G E L+ F LM++ K D V+ L+ CSH GL + GL F D+
Sbjct: 541 GYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIE 600
Query: 295 VSPQIEHHGCI 305
V P++EH+GC+
Sbjct: 601 VEPKMEHYGCV 611
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M + G + ++LN C N R G +H ++ K + +V + L+ +Y++
Sbjct: 234 MALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDS 293
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF----NLMQKGVFKTDEVSFT 267
+ A VF M +R +VSW ++I ++ G+ +AL F + GV+ D++ +
Sbjct: 294 LGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLS 352
>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
gi|194704572|gb|ACF86370.1| unknown [Zea mays]
gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
Length = 700
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 141/266 (53%), Gaps = 24/266 (9%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVS 101
+ TV W + IS + + G + EA L F RM N +++ T+++G
Sbjct: 356 VHDTVCWNTMISGYVQCGILEEAMLLFQRM----PNKDMVSWNTMIAG------------ 399
Query: 102 TALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
YA+ G+M A +F M R W ++++GFV+ D F +AL +F +M+
Sbjct: 400 ------YAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNR 453
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
D+ T S L CAN+ L +G +H + + ++ N L+ Y++ G I A+Q+
Sbjct: 454 ADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQI 513
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F M + +VSWN++I G+A NG EA+ F M+ + DEV+F G L+ACSHAGLI
Sbjct: 514 FDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLI 573
Query: 280 EDGLQYFDIMKKIYRVSPQIEHHGCI 305
++GL +F M K Y + P EH+ C+
Sbjct: 574 DEGLFFFYSMTKEYLLKPVAEHYACM 599
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 107/261 (40%), Gaps = 22/261 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRM--RLYGTNPSHITFVTL--LSGCADF----PSNN 97
V W S+++ +SG ++ A F M + N FV L+ + F S N
Sbjct: 175 VSWNSALAGLTQSGEMVRAVQFFDEMVKDMTSWNLMLAGFVRTGDLNAASSFFAKIESPN 234
Query: 98 VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQI 155
V+ LL+ Y + GR+ A +FD M R W +L+G+V EEA + F M I
Sbjct: 235 VISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPI 294
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
+ TIIS L ++ + K F + V LM Y + +
Sbjct: 295 KN-SISWTTIISGLARAGKLQE------AKDLLDKMSF-NCVAAKTALMHGYLQRNMADD 346
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
AR++F M V WN++I G+ G + EA+ F M D VS+ + +
Sbjct: 347 ARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMP----NKDMVSWNTMIAGYAQ 402
Query: 276 AGLIEDGLQYFDIMKKIYRVS 296
G + + F M + VS
Sbjct: 403 DGQMHKAIGIFRRMNRRNTVS 423
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 119/288 (41%), Gaps = 54/288 (18%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD----------- 92
TV + + +S R G I EA F M T +++ +++ +D
Sbjct: 48 NTVTYNAMLSALARHGRIDEARALFDGMPGRNT----VSWNAMIAALSDHGRVADARSLF 103
Query: 93 --FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--CDF-WTALLNGFVKRDYFEEAL 147
P + T ++ YA+ G ++LA V D M G C + A+++G+ K F++A+
Sbjct: 104 DRMPVRDEFSWTVMVSCYARGGDLELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAM 163
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCAN----VRTLGI-----------GLWMHRYVPKQD 192
+ R M PD ++ S L VR + L + +V D
Sbjct: 164 KLLREMP----APDLVSWNSALAGLTQSGEMVRAVQFFDEMVKDMTSWNLMLAGFVRTGD 219
Query: 193 F-----------KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN 241
NV TL++ Y R G I AR +F RM +R +V+WN ++ G+
Sbjct: 220 LNAASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHL 279
Query: 242 GFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
+ EA + F+ M + +S+T ++ + AG +++ D M
Sbjct: 280 SPIEEACKLFDEMP----IKNSISWTTIISGLARAGKLQEAKDLLDKM 323
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 89/228 (39%), Gaps = 37/228 (16%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P N + A+L A+ GR+D A +FD M G + W A++ +A F
Sbjct: 44 MPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLF 103
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC-NTLMDVYSR 209
M + E + ++S G L + R V + D C N ++ Y++
Sbjct: 104 DRMPVRD-EFSWTVMVSCY-------ARGGDLELARDVLDRMPGDKCTACYNAMISGYAK 155
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF----------NLMQKGVF 259
G + A ++ + M LVSWNS + G +G + A+++F NLM G
Sbjct: 156 NGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEMVKDMTSWNLMLAGFV 215
Query: 260 KTDE----------------VSFTGALTACSHAGLIEDGLQYFDIMKK 291
+T + +S+ L AG I D FD M +
Sbjct: 216 RTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRMPE 263
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 144/277 (51%), Gaps = 19/277 (6%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----------- 96
W + I H S EA L + MR P TF LL C++F S
Sbjct: 96 WNTLIRAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVL 155
Query: 97 ------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
N+ V L+ Y+ + A VFD + R WT +++G+ + EALE
Sbjct: 156 KFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNEALE 215
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M + G+EP+ T+ SVL+ CA L +G +H ++ ++ + V + L+ +Y+
Sbjct: 216 LFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVHMYA 275
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G I A+++F + +R +WN++I G AV+G EAL+ F ++K ++++F G
Sbjct: 276 KNGAILMAQKLFDXISERNTATWNAMICGLAVHGHAKEALDRFWKLEKEQIVPNDITFVG 335
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+AC HAGL+ G + F +MK++Y + P+IEH+GC+
Sbjct: 336 VLSACCHAGLLSVGRKIFHLMKRVYGIEPKIEHYGCM 372
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 156/283 (55%), Gaps = 23/283 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYG--TNPSHITFVTLLSGCADF--------- 93
V WT+ I+ + + G +E F +M + P+ T V LLS C+
Sbjct: 191 VVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFL 250
Query: 94 ---------PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
P N ++V TAL+DMY+K G ++ A +FD + + W A++ G V+
Sbjct: 251 SVFIDVNKIPLNTILV-TALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGL 309
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
EEA++ +R M+ V+P+ +T+++VL+ CA + L +G +H Y+ + NV +
Sbjct: 310 LEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATA 369
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+Y++ G I+ A +F + ++ + WN++I+G A +G ++L F+ M + + +
Sbjct: 370 LVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPN 429
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+V+F G L+AC+H+GL+E+G F M + +SP++EH+ C+
Sbjct: 430 DVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACM 472
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 125/292 (42%), Gaps = 53/292 (18%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
T W S I + G + + +M T PS+ TF +L C+ S
Sbjct: 57 TDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIH 116
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM---------------------- 124
+++ V +L+DMY K R+D A +D M
Sbjct: 117 THVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVE 176
Query: 125 ------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG--VEPDYLTIISVLN 170
R WTA++NG+ K F E L FR M +S V+P+ T++ +L+
Sbjct: 177 KARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLS 236
Query: 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS 230
C+ + +G ++ ++ N + L+D+YS+ G +E A ++F + + L S
Sbjct: 237 ACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPS 296
Query: 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
WN+II G G + EA++ + M+ K +E++ L+AC+ G +E G
Sbjct: 297 WNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELG 348
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 6/153 (3%)
Query: 104 LLDMYAKFGRMDLATVVFD-VMRGCDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
L+D+++ +D A V D DF W +L+ + + +L + M S +P
Sbjct: 37 LIDLHS----IDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPS 92
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
T VL C+ + ++ G +H +V + F ++ VCN+L+D+Y + ++ AR +
Sbjct: 93 NFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWD 152
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
M R VSWNSII G+ G V +A + F M
Sbjct: 153 DMGFRDEVSWNSIISGYVQWGQVEKARDLFEEM 185
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D++S I++AR V + T SWNS+I + V+G +L + M + K
Sbjct: 37 LIDLHS----IDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPS 92
Query: 263 EVSFTGALTACSHAGLIEDGLQ 284
+F L ACS G + +G Q
Sbjct: 93 NFTFPFVLKACSTLGSVLEGEQ 114
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 129/220 (58%), Gaps = 9/220 (4%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P +V+ TA+L YAK G +D A +FD + D W A+++G+ + EAL FR
Sbjct: 189 PDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFR 248
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD---NVRVCNTLMDVYS 208
M SGVEPD ++++ L+ A + T G W+H +V + N RV L+D+Y
Sbjct: 249 RMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYY 308
Query: 209 RFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVS 265
+ G +E A VF + R +V+WN+++ G+A++G EAL F L +G++ TD ++
Sbjct: 309 KCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTD-IT 367
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L ACSH+GL+++G + F M + Y + P++EH+GC+
Sbjct: 368 FIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCM 407
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 95/250 (38%), Gaps = 56/250 (22%)
Query: 84 VTLLSGCADFPSNNVMVSTA--------------LLDMYAKFGRMDLATVVFDVMRGCD- 128
LL+GCA + + + A L YA GR+DLA + R D
Sbjct: 34 AALLAGCASARRASELHAAAVRAGVDQDKAVDFRLQRAYAASGRLDLAVALL--RRTPDP 91
Query: 129 ---FWTALLNGFVKRDYFEEALEYFRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWM 184
F+T+ ++ R AL M +S G+ P T+ + L C L +G +
Sbjct: 92 TAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPACGG---LAVGRAL 148
Query: 185 HRYVPKQDFKDNVRVCNTLMDV--------------------------------YSRFGC 212
H Y K V L+ + Y++ G
Sbjct: 149 HGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGL 208
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ AR +F + + L+ WN+++ G+ +G EAL F M + + DEVS AL+A
Sbjct: 209 LDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSA 268
Query: 273 CSHAGLIEDG 282
+ G E G
Sbjct: 269 VAQLGTAESG 278
>gi|449482847|ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 833
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 152/280 (54%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLLSGCADFPS--------- 95
+ WT+ IS ++G + F M YG+ P+ +T+++LL+ C+ +
Sbjct: 149 ITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHG 208
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+++ + +AL+DMY+K GR+ A +F++ D T +L GF EE
Sbjct: 209 LIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEE 268
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A++ F M G+E D + VL V +L +G +H +V K++F N V N L++
Sbjct: 269 AIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQVHSFVVKRNFICNPFVSNGLIN 328
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ G ++ + +VF RM +R V+WNS+I FA +G +AL+ + MQ K +V+
Sbjct: 329 MYSKCGALDESMKVFDRMRERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVT 388
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L ACSHAGL++ G+++ M K + ++P+ EHH C+
Sbjct: 389 FLSLLHACSHAGLVKKGMEFLKSMTKDHGMNPRSEHHACV 428
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ----DFKDNVRVCNTLMDVYSRFGCI 213
++P +L L++C L +G +H + K + + V + N+L+ +Y R G +
Sbjct: 46 LDPSFL-----LSICGREGNLHLGSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKL 100
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNG--FVGEALEYFNLMQKGVFKTDEVSFTGALT 271
A +VF M R +SWN++I GF NG F G ++ F M + + +++T ++
Sbjct: 101 PDAVKVFDEMVTRDTISWNALIGGFVRNGKFFAGLGMQVFYEMG----ERNVITWTAVIS 156
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSP 297
+ G E L+ F M V P
Sbjct: 157 GLAQNGYHEHSLKLFKEMMSYGSVEP 182
>gi|449442815|ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g05340-like [Cucumis sativus]
Length = 838
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 152/280 (54%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLLSGCADFPS--------- 95
+ WT+ IS ++G + F M YG+ P+ +T+++LL+ C+ +
Sbjct: 154 ITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHG 213
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+++ + +AL+DMY+K GR+ A +F++ D T +L GF EE
Sbjct: 214 LIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEE 273
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A++ F M G+E D + VL V +L +G +H +V K++F N V N L++
Sbjct: 274 AIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQVHSFVVKKNFICNPFVSNGLIN 333
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ G ++ + +VF RM +R V+WNS+I FA +G +AL+ + MQ K +V+
Sbjct: 334 MYSKCGALDESMKVFDRMRERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVT 393
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L ACSHAGL++ G+++ M K + ++P+ EHH C+
Sbjct: 394 FLSLLHACSHAGLVKKGMEFLKSMTKDHGMNPRSEHHACV 433
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVS 265
Y + GC+ QVF M +R +++W ++I G A NG+ +L+ F +M G + + ++
Sbjct: 132 YFKCGCVGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVEPNSLT 191
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKI 292
+ LTACS +++G Q ++ K+
Sbjct: 192 YLSLLTACSGLEALKEGCQIHGLIMKL 218
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 20/178 (11%)
Query: 131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
T+L++ F + + E ++ ++P +L L++C L +G +H + K
Sbjct: 19 TSLISPFRNQFHQNPFPETSSTFVLNHLDPSFL-----LSICGREGNLHLGSSLHASIIK 73
Query: 191 Q----DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN----- 241
+ + V + N+L+ +Y R G + A +VF M R +SWN++I GF N
Sbjct: 74 SFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEMITRDTISWNALIGGFVRNGNSYF 133
Query: 242 --GFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSP 297
G VG ++ F M + + +++T ++ + G E L+ F M V P
Sbjct: 134 KCGCVGLGMQVFYEMG----ERNVITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVEP 187
>gi|357131180|ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Brachypodium distachyon]
Length = 474
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 142/260 (54%), Gaps = 25/260 (9%)
Query: 49 TSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMY 108
TS I+ + GC+++A + F M P NV+ ++ +
Sbjct: 133 TSLINTYVVCGCLVDARMAFDEM----------------------PVKNVVSWNVMITGF 170
Query: 109 AKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
A G ++ A ++F+ M R WT L++G+ + + EA+ R M G+ P +T++
Sbjct: 171 AGRGEIEYARLLFERMPSRNVVSWTGLIDGYTRSCHSVEAVALLRRMMAEGISPTEITVL 230
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM-HK 225
+V+ +++ + +G +H Y K ++RV N+L+D+Y++ G I+ + +VF M ++
Sbjct: 231 AVVPAISDIGRILMGETLHGYCEKNGLVLDIRVGNSLIDLYAKIGSIQSSLKVFHGMLNR 290
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
R LVSW SII GFA++G EA+E F M++ + + V+F L ACSH GL+E G+++
Sbjct: 291 RNLVSWTSIISGFAMHGLSTEAVELFAEMRRSGIRPNRVTFLSVLNACSHGGLVEQGVEF 350
Query: 286 FDIMKKIYRVSPQIEHHGCI 305
F M Y ++P+I+H GCI
Sbjct: 351 FKSMVYEYNINPEIKHFGCI 370
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 7/153 (4%)
Query: 116 LATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175
+A VFD R W ALL + + +EAL FR + + Y + S L CA +
Sbjct: 51 VAHQVFD--RRPTPWHALLKAYSHGPFPQEALNLFRDAHRNMADDTYAFMFS-LRACAGL 107
Query: 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII 235
G +H V ++ F+ + V +L++ Y GC+ AR F M + +VSWN +I
Sbjct: 108 AWPWTGAQLHGLVIRKGFEFHAYVHTSLINTYVVCGCLVDARMAFDEMPVKNVVSWNVMI 167
Query: 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
GFA G +EY L+ + + + VS+TG
Sbjct: 168 TGFAGRG----EIEYARLLFERMPSRNVVSWTG 196
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 121/215 (56%), Gaps = 2/215 (0%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
P N L+D Y + G ++LA +F+ M D WT ++NG+ + + EA+ F
Sbjct: 968 MPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVF 1027
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M G+ PD +T+ +V++ CA++ L IG +H Y + F +V + + L+D+YS+
Sbjct: 1028 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKC 1087
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G +E A VF + K+ L WNSII G A +GF EAL+ F M+ K + V+F
Sbjct: 1088 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVF 1147
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
TAC+HAGL+E+G + + M Y + +EH+GC+
Sbjct: 1148 TACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCM 1182
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 109 AKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
+ F R+DLA M+ + + AL+ GFV + +LE++ M V P T
Sbjct: 823 SSFNRLDLAVSFMTQMQKPNVFVYNALIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTYS 882
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S++ A G L H + K F +V++ TL+ YS G I AR+VF M +R
Sbjct: 883 SLVQASAFASGFGESLQAHIW--KFGFGFHVQIQTTLIGFYSASGRIREARKVFDEMPER 940
Query: 227 TLVSWNSIIVGF 238
V+W +++ +
Sbjct: 941 DDVTWTTMVSAY 952
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 130/219 (59%), Gaps = 11/219 (5%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
D S NVM++ YAK G M LA +FD + D W +++G+V+ ALE
Sbjct: 178 DLVSWNVMITA-----YAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALEL 232
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---VRVCNTLMDV 206
F MQ G +PD +T++S+L+ CA+ L +G +H + F N V + N L+D+
Sbjct: 233 FEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDM-FSRNGFPVVLGNALIDM 291
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G ++ A +VF M + + +WNSI+ G A++G V E+++ F M KG + DE++F
Sbjct: 292 YAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITF 351
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACSH G+++ G ++F++M+ YRV P I+H+GC+
Sbjct: 352 VAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCM 390
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 31/225 (13%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------ 92
V W IS + R G L A F +M+ G P +T ++LLS CAD
Sbjct: 210 VVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHS 269
Query: 93 -----FPSNN--VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYF 143
F N V++ AL+DMYAK G M A VF MR D W +++ G +
Sbjct: 270 SLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHV 329
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-----LWMHRYVPKQDFKDNVR 198
E+++ F M V PD +T ++VL C++ + G L H+Y + N++
Sbjct: 330 LESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKY----RVEPNIK 385
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
++D+ R G ++ A + M + V W +++ V+G
Sbjct: 386 HYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHG 430
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 68/187 (36%), Gaps = 62/187 (33%)
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS--------- 208
V PD LT VL C + G+ +H +V K + + V N L+ +++
Sbjct: 78 VRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAA 137
Query: 209 ----------------------RFGCIEFARQVFQRMHKRTLVSWNSIIVGFA------- 239
R G I AR +F + LVSWN +I +A
Sbjct: 138 ALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMAL 197
Query: 240 -------------------VNGFVG-----EALEYFNLMQKGVFKTDEVSFTGALTACSH 275
++G+V ALE F MQ+ K D V+ L+AC+
Sbjct: 198 ARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACAD 257
Query: 276 AGLIEDG 282
+G ++ G
Sbjct: 258 SGDLDVG 264
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC---ADFPS----- 95
+ V WT+ S + SG EA F +M G P V +LS C D S
Sbjct: 176 SVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIV 235
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
N V T L+++YAK G+M+ A VFD M D W+ ++ G+ + +
Sbjct: 236 KYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPK 295
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E +E F M ++PD +I+ L+ CA++ L +G W + + +F N+ + N L+
Sbjct: 296 EGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALI 355
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G + +VF+ M ++ +V N+ I G A NG V + F +K D
Sbjct: 356 DMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGS 415
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L C HAGLI+DGL++F+ + +Y + +EH+GC+
Sbjct: 416 TFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCM 456
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 19/234 (8%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTALLDMYAK 110
F +R +G TF +L C S ++V T+LL +Y+
Sbjct: 99 FLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSG 158
Query: 111 FGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
GR++ A +FD + R WTAL +G+ EA++ F+ M GV+PD I+ V
Sbjct: 159 SGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQV 218
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ C +V L G W+ +Y+ + + + N V TL+++Y++ G +E AR VF M ++ +
Sbjct: 219 LSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDI 278
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
V+W+++I G+A N F E +E F M + K D+ S G L++C+ G ++ G
Sbjct: 279 VTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 3/165 (1%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
+ +L+NGFV F E L+ F ++ G+ T VL C + +G+ +H V
Sbjct: 78 LYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLV 137
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K F +V +L+ +YS G + A ++F + R++V+W ++ G+ +G EA+
Sbjct: 138 VKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAI 197
Query: 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG---LQYFDIMK 290
+ F M + K D L+AC H G ++ G ++Y + M+
Sbjct: 198 DLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEME 242
>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1274
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 125/211 (59%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
++ S +LL MYAK G ++ AT+ FD + D + ALL+G V+ EEA F+ MQ
Sbjct: 341 DLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQ 400
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+EPD T++S++ C+++ L G H V + +CN+L+D+Y++ G I+
Sbjct: 401 ACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKID 460
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
+RQVF +M R +VSWN++I G+ ++G EA F M+ F D+V+F + ACS
Sbjct: 461 LSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACS 520
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H+GL+ +G +FD M Y + P++EH+ C+
Sbjct: 521 HSGLVTEGKHWFDTMTHKYGILPRMEHYICM 551
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 117/269 (43%), Gaps = 24/269 (8%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLLS-------- 88
+K + V W + ++ + G A M+ +G P+ T V+LL
Sbjct: 159 AKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGAL 218
Query: 89 ------------GCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALL 134
C + V++ TALLDMYAK ++ A VF M R W+AL+
Sbjct: 219 FQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALI 278
Query: 135 NGFVKRDYFEEALEYFRVMQISGV-EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193
GFV D EA F+ M + G+ ++ S L VCA++ L +G +H + K
Sbjct: 279 GGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGI 338
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
++ N+L+ +Y++ G I A F + + +S+ +++ G NG EA F
Sbjct: 339 HADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKK 398
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDG 282
MQ + D + + ACSH ++ G
Sbjct: 399 MQACNMEPDIATMVSLIPACSHLAALQHG 427
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 7/202 (3%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ VSTAL+D+Y + R A VF MR W A+L G+ + A+ + MQ
Sbjct: 134 DLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQ 193
Query: 155 I-SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---VRVCNTLMDVYSRF 210
G+ P+ T++S+L + A L G +H Y + + N V + L+D+Y++
Sbjct: 194 DHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKC 253
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGA 269
+ +A +VF M R V+W+++I GF + + EA F +++ +G+ S A
Sbjct: 254 KQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASA 313
Query: 270 LTACSHAGLIEDGLQYFDIMKK 291
L C+ + G Q ++ K
Sbjct: 314 LRVCASLADLHMGTQLHALIAK 335
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 3/181 (1%)
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
L+ + G++ LA VFD + D + AL+ + F A++ +R M V P+
Sbjct: 41 LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T VL C+ + L G +H + ++ V L+D+Y R AR VF +
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGALTACSHAGLIED 281
M R +V+WN+++ G+A +G A+ + MQ G + + + L + G +
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220
Query: 282 G 282
G
Sbjct: 221 G 221
>gi|302822087|ref|XP_002992703.1| hypothetical protein SELMODRAFT_135822 [Selaginella moellendorffii]
gi|300139444|gb|EFJ06184.1| hypothetical protein SELMODRAFT_135822 [Selaginella moellendorffii]
Length = 440
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 146/282 (51%), Gaps = 23/282 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V WT +S + G + A + RM G P+ ITF+ +L C
Sbjct: 77 VSWTLLVSAFAQHGHLDLAIVSLQRMHHEGIQPNRITFLAVLDACIGERELVIGRTIHRS 136
Query: 93 ----FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD---FWTALLNGFVKRDYFEE 145
V V+T L+DMY K G +D A VFD M WTA+++ +VK D E
Sbjct: 137 LIDAAMDKEVSVATCLVDMYTKCGSLDEARAVFDGMGAIADVITWTAMISAYVKSDQARE 196
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLM 204
AL FR+MQ+ GV+P+ +T + LN CA++ L G ++H + + F++ N+ V N L+
Sbjct: 197 ALRLFRMMQLDGVKPNCVTCLICLNACASLTDLREGRFIHEKITQSGFQEINLNVGNALV 256
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDE 263
D+Y G + A+ VF +M ++ +WNS+I F+ LE F MQ +GV+ D
Sbjct: 257 DMYGTCGNLAVAKSVFDQMLEKDKATWNSLIGSFSQFSESSSTLELFFAMQLEGVYP-DA 315
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++F G L AC+ AG++ DG Q++ M + + + +H GCI
Sbjct: 316 ITFVGVLFACNSAGMLADGHQFYVSMLLDFGIECRFQHCGCI 357
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 55/121 (45%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
MQ+ G P+ T ++ N C + ++ ++ + + + N L++ Y + G
Sbjct: 1 MQLEGTAPNRSTFVTTFNACTRIGSIATAKGIYATIAHLAAVCSADLHNALLNTYCKLGS 60
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+ A +F + ++ +VSW ++ FA +G + A+ M + + ++F L A
Sbjct: 61 LADAIALFAEIVEKNVVSWTLLVSAFAQHGHLDLAIVSLQRMHHEGIQPNRITFLAVLDA 120
Query: 273 C 273
C
Sbjct: 121 C 121
>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 903
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 148/296 (50%), Gaps = 38/296 (12%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
V W + I+ H ++G E F M P TF ++L C
Sbjct: 448 AVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSS 507
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFD----------------------VMRG 126
++N V +L+DMY+K G ++ A + +
Sbjct: 508 IVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEM 567
Query: 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186
C W ++++G+V ++ E+A F M G+ PD T +VL+ CAN+ + G+G +H
Sbjct: 568 CVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHA 627
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
V K++ + +V +C+TL+D+YS+ G + +R +F++ +R V+WN++I G+A +G E
Sbjct: 628 QVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEE 687
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
A++ F M K + V+F L AC+H GLI+ GL+YF +MK+ Y + PQ+ H+
Sbjct: 688 AIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHY 743
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 23/255 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTR-MRLYGTNPSHITFVTLLSGCA------------ 91
+V W++ I+ C +L AL+F + M+ S + ++L CA
Sbjct: 246 SVSWSAIIA-GCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLH 304
Query: 92 ------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYF 143
DF ++ + V TA LDMYAK M A ++FD + + A++ G+ + ++
Sbjct: 305 AHALKSDFAADGI-VRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHG 363
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
+AL F + SG+ D +++ V CA V+ L GL ++ K +V V N
Sbjct: 364 FKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAA 423
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y + + A +VF M +R VSWN+II NG E L F M + + DE
Sbjct: 424 IDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDE 483
Query: 264 VSFTGALTACSHAGL 278
+F L AC+ L
Sbjct: 484 FTFGSILKACTGGSL 498
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 119/269 (44%), Gaps = 19/269 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----- 96
+ V W S +S + ++G L++ F M G TF +L C+
Sbjct: 142 VRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQ 201
Query: 97 ------------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
+V+ ++ALLDMYAK R + VF + + W+A++ G V+ +
Sbjct: 202 IHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNL 261
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
AL++F+ MQ SVL CA + L +G +H + K DF + V
Sbjct: 262 LSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTA 321
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
+D+Y++ ++ A+ +F S+N++I G++ +AL F+ + D
Sbjct: 322 TLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFD 381
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKK 291
E+S +G AC+ + +GLQ + + K
Sbjct: 382 EISLSGVFRACALVKGLSEGLQIYGLAIK 410
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 107/212 (50%), Gaps = 22/212 (10%)
Query: 33 IQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD 92
++ ++K + V W S IS + +A + FTRM G P T+ T+L CA+
Sbjct: 556 LEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCAN 615
Query: 93 FPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTAL 133
S ++V + + L+DMY+K G + + ++F+ DF W A+
Sbjct: 616 LASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAM 675
Query: 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193
+ G+ EEA++ F M + ++P+++T IS+L CA++ + GL + Y+ K+D+
Sbjct: 676 ICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGL-EYFYMMKRDY 734
Query: 194 KDNVRV--CNTLMDVYSRFGCIEFARQVFQRM 223
+ ++ + ++D+ + G ++ A ++ + M
Sbjct: 735 GLDPQLPHYSNMVDILGKSGKVKRALELIREM 766
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 92/183 (50%), Gaps = 2/183 (1%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFR 151
P +V+ +++ Y+K M A F++M R W ++L+G+++ +++E F
Sbjct: 110 PLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFV 169
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M G+E D T +L VC+ + +G+ +H V + +V + L+D+Y++
Sbjct: 170 DMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGK 229
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
+ +VFQ + ++ VSW++II G N + AL++F MQK + + L
Sbjct: 230 RFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 289
Query: 272 ACS 274
+C+
Sbjct: 290 SCA 292
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
V CA L +G H ++ F+ V N L+ VY+ A VF +M R
Sbjct: 54 VFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRD 113
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLM 254
+VSWN +I G++ + + +A +FN+M
Sbjct: 114 VVSWNKMINGYSKSNDMFKANSFFNMM 140
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 4/140 (2%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M ISG P + +L V N R + +P +D V N +++ YS+
Sbjct: 74 MIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRD----VVSWNKMINGYSKSND 129
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+ A F M R +VSWNS++ G+ NG +++E F M + + D +F L
Sbjct: 130 MFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKV 189
Query: 273 CSHAGLIEDGLQYFDIMKKI 292
CS G+Q I+ ++
Sbjct: 190 CSFLEDTSLGMQIHGIVVRV 209
>gi|242057857|ref|XP_002458074.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
gi|241930049|gb|EES03194.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
Length = 963
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 146/281 (51%), Gaps = 22/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
V W S + S + +E F M G P+ +TFV LL+ +
Sbjct: 514 VSWNSMMGVMASSQAPISETVEVFNNMMRGGLIPNKVTFVNLLAALSPLSVLELGKQFHA 573
Query: 95 ---SNNVM----VSTALLDMYAKFGRMDLATVVFDVMRG---CDFWTALLNGFVKRDYFE 144
+ VM V AL+ YAK G M+ +F M G W ++++G++ Y +
Sbjct: 574 AVLKHGVMDDNVVDNALISCYAKSGDMNSCEHLFSNMSGRRDAVSWNSMISGYIYNGYLQ 633
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EA++ +M SG D T +LN CA+V L G+ MH + + + +V V + L+
Sbjct: 634 EAMDCVWLMLHSGQIMDCCTFSIILNACASVAALERGMEMHAFGIRSHLESDVVVESALV 693
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+YS+ G +++A ++F M +R SWNS+I G+A +G +ALE F M + D V
Sbjct: 694 DMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKALETFEEMLRSRESPDHV 753
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F L+ACSHAGL+E GL+YF++M + + PQIEH+ C+
Sbjct: 754 TFVSVLSACSHAGLVERGLEYFEMMPD-HGILPQIEHYSCV 793
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 20/213 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V W S IS + +G + EA M G TF +L+ CA +
Sbjct: 616 AVSWNSMISGYIYNGYLQEAMDCVWLMLHSGQIMDCCTFSIILNACASVAALERGMEMHA 675
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
++V+V +AL+DMY+K GR+D A+ +F+ M R W ++++G+ + +
Sbjct: 676 FGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRK 735
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
ALE F M S PD++T +SVL+ C++ + GL +P + + ++D
Sbjct: 736 ALETFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVID 795
Query: 206 VYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVG 237
+ R G I+ ++ QRM K + W +++V
Sbjct: 796 LLGRAGKIDKIKEYIQRMPMKPNALIWRTVLVA 828
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 13/193 (6%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
++++ +S L++ YAK R+ A+ VFD M R WT LL+G+V + EEA FR
Sbjct: 92 NHDLFLSNHLVNSYAKGARLAAASRVFDEMPQRNAVSWTCLLSGYVLQGITEEAFRVFRA 151
Query: 153 MQIS---GVEPDYLTIISVLNVCAN--VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
M G P T ++L C + LG +H + K ++ N VCN L+ +Y
Sbjct: 152 MLREVEPGCRPTSFTFGTLLRACQDGGPDRLGFATQVHGLLSKTEYASNTTVCNALISMY 211
Query: 208 SR--FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG----VFKT 261
G A++VF R L++WN+++ +A G V F MQ+ +
Sbjct: 212 GSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVVSTFTLFMDMQREDSRIQLRP 271
Query: 262 DEVSFTGALTACS 274
E +F +TA S
Sbjct: 272 TEHTFGSLITATS 284
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 35/201 (17%)
Query: 86 LLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEE 145
L +G D + VS L++MYAK G +D A+ +F +M D
Sbjct: 405 LRTGLTDL---KIAVSNGLVNMYAKCGAIDSASKIFQLMEATD----------------- 444
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
+IS + TIIS L+ ++ L G +H K + V N L+
Sbjct: 445 --------RIS-----WNTIISALDQ-NGLKLLSAGQQVHCDAVKWGLDLDTSVSNVLVK 490
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSII-VGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+Y G + +VF M VSWNS++ V + + E +E FN M +G ++V
Sbjct: 491 MYGECGAMSDCWKVFNSMADHDEVSWNSMMGVMASSQAPISETVEVFNNMMRGGLIPNKV 550
Query: 265 SFTGALTACSHAGLIEDGLQY 285
+F L A S ++E G Q+
Sbjct: 551 TFVNLLAALSPLSVLELGKQF 571
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 83 FVTLL-SGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVK 139
FV++L SGC S+++ V +AL+ +A+ G +D A +F ++ + T L+ G VK
Sbjct: 297 FVSVLKSGC----SSDLYVGSALVSAFARHGLIDEAKDIFLSLKEKNAVTLNGLIVGLVK 352
Query: 140 RDYFEEALEYF---RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD- 195
+ EEA++ F R + + + + ++ L G H ++ + D
Sbjct: 353 QHCSEEAVKIFVGTRNTIVVNADTYVVLLSAIAEYSIPEEGLRKGKEAHGHMLRTGLTDL 412
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+ V N L+++Y++ G I+ A ++FQ M +SWN+II NG
Sbjct: 413 KIAVSNGLVNMYAKCGAIDSASKIFQLMEATDRISWNTIISALDQNGL 460
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 112/274 (40%), Gaps = 38/274 (13%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLY----GTNPSHITFVTLLSGCADFP------ 94
V WT +S + G I E A R L G P+ TF TLL C D
Sbjct: 126 AVSWTCLLSGYVLQG-ITEEAFRVFRAMLREVEPGCRPTSFTFGTLLRACQDGGPDRLGF 184
Query: 95 -------------SNNVMVSTALLDMYAK--FGRMDLATVVFD--VMRGCDFWTALLNGF 137
++N V AL+ MY G LA VFD +R W AL++ +
Sbjct: 185 ATQVHGLLSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVY 244
Query: 138 VKRDYFEEALEYFRVM-------QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190
K+ F M Q+ E + ++I+ ++ + + +++ V K
Sbjct: 245 AKKGDVVSTFTLFMDMQREDSRIQLRPTEHTFGSLITATSLSSGSSAVLDQVFVS--VLK 302
Query: 191 QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 250
++ V + L+ ++R G I+ A+ +F + ++ V+ N +IVG EA++
Sbjct: 303 SGCSSDLYVGSALVSAFARHGLIDEAKDIFLSLKEKNAVTLNGLIVGLVKQHCSEEAVKI 362
Query: 251 FNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
F + + + ++ L+A + + E+GL+
Sbjct: 363 F-VGTRNTIVVNADTYVVLLSAIAEYSIPEEGLR 395
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H + K+ ++ + N L++ Y++ + A +VF M +R VSW ++ G+ + G
Sbjct: 82 LHVELIKRGLNHDLFLSNHLVNSYAKGARLAAASRVFDEMPQRNAVSWTCLLSGYVLQGI 141
Query: 244 VGEALEYFNLMQKGV---FKTDEVSFTGALTACSHAG 277
EA F M + V + +F L AC G
Sbjct: 142 TEEAFRVFRAMLREVEPGCRPTSFTFGTLLRACQDGG 178
>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 511
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 130/218 (59%), Gaps = 4/218 (1%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
+ +V V A++ Y + G M A +FD M + WT +++GF + + EAL+
Sbjct: 142 EMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKM 201
Query: 150 FRVMQI-SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M+ V+P+++T++SVL CAN+ L IG + Y + F DN+ VCN +++YS
Sbjct: 202 FLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYS 261
Query: 209 RFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
+ G I+ A+++F+ + ++R L SWNS+I A +G EAL F M + K D V+F
Sbjct: 262 KCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFV 321
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L AC H G++ G + F M++++++SP++EH+GC+
Sbjct: 322 GLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCM 359
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 101/254 (39%), Gaps = 54/254 (21%)
Query: 48 WTSSISRHCRSGCILEAALEFTRM-RLYGTNPSHITFVTLLSGCADFPS----------- 95
WT+ IS ++G EA F M + P+HIT V++L CA+
Sbjct: 182 WTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYA 241
Query: 96 ------NNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEA 146
+N+ V A ++MY+K G +D+A +F+ + R W +++ +EA
Sbjct: 242 RENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEA 301
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F M G +PD +T + +L C + + V Q+ ++ + +
Sbjct: 302 LTLFAQMLREGEKPDAVTFVGLLLACVHGGMV---------VKGQELFKSMEEVHKISPK 352
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
+GC+ + G VG+ E ++L++ K D V +
Sbjct: 353 LEHYGCM------------------------IDLLGRVGKLQEAYDLIKTMPMKPDAVVW 388
Query: 267 TGALTACSHAGLIE 280
L ACS G +E
Sbjct: 389 GTLLGACSFHGNVE 402
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 11/175 (6%)
Query: 127 CDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT---IISVLNVCANVRTLGIGL 182
C F + L+ + E++ + ++ G+ P + T I + ++ R L +
Sbjct: 46 CTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRL-- 103
Query: 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG 242
+H + F+ + C TL+ Y++ G + AR+VF M KR + WN++I G+ G
Sbjct: 104 -LHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRG 162
Query: 243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSP 297
+ A+E F+ M + + S+T ++ S G + L+ F M+K V P
Sbjct: 163 DMKAAMELFDSMP----RKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKP 213
>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
Length = 861
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 148/296 (50%), Gaps = 38/296 (12%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
V W + I+ H ++G E F M P TF ++L C
Sbjct: 406 AVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSS 465
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFD----------------------VMRG 126
++N V +L+DMY+K G ++ A + +
Sbjct: 466 IVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEM 525
Query: 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186
C W ++++G+V ++ E+A F M G+ PD T +VL+ CAN+ + G+G +H
Sbjct: 526 CVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHA 585
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
V K++ + +V +C+TL+D+YS+ G + +R +F++ +R V+WN++I G+A +G E
Sbjct: 586 QVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEE 645
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
A++ F M K + V+F L AC+H GLI+ GL+YF +MK+ Y + PQ+ H+
Sbjct: 646 AIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHY 701
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 23/255 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTR-MRLYGTNPSHITFVTLLSGCA------------ 91
+V W++ I+ C +L AL+F + M+ S + ++L CA
Sbjct: 204 SVSWSAIIA-GCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLH 262
Query: 92 ------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYF 143
DF ++ + V TA LDMYAK M A ++FD + + A++ G+ + ++
Sbjct: 263 AHALKSDFAADGI-VRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHG 321
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
+AL F + SG+ D +++ V CA V+ L GL ++ K +V V N
Sbjct: 322 FKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAA 381
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y + + A +VF M +R VSWN+II NG E L F M + + DE
Sbjct: 382 IDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDE 441
Query: 264 VSFTGALTACSHAGL 278
+F L AC+ L
Sbjct: 442 FTFGSILKACTGGSL 456
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 119/269 (44%), Gaps = 19/269 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN----- 96
+ V W S +S + ++G L++ F M G TF +L C+
Sbjct: 100 VRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQ 159
Query: 97 ------------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
+V+ ++ALLDMYAK R + VF + + W+A++ G V+ +
Sbjct: 160 IHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNL 219
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
AL++F+ MQ SVL CA + L +G +H + K DF + V
Sbjct: 220 LSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTA 279
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
+D+Y++ ++ A+ +F S+N++I G++ +AL F+ + D
Sbjct: 280 TLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFD 339
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKK 291
E+S +G AC+ + +GLQ + + K
Sbjct: 340 EISLSGVFRACALVKGLSEGLQIYGLAIK 368
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 107/212 (50%), Gaps = 22/212 (10%)
Query: 33 IQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD 92
++ ++K + V W S IS + +A + FTRM G P T+ T+L CA+
Sbjct: 514 LEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCAN 573
Query: 93 FPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTAL 133
S ++V + + L+DMY+K G + + ++F+ DF W A+
Sbjct: 574 LASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAM 633
Query: 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193
+ G+ EEA++ F M + ++P+++T IS+L CA++ + GL + Y+ K+D+
Sbjct: 634 ICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGL-EYFYMMKRDY 692
Query: 194 KDNVRV--CNTLMDVYSRFGCIEFARQVFQRM 223
+ ++ + ++D+ + G ++ A ++ + M
Sbjct: 693 GLDPQLPHYSNMVDILGKSGKVKRALELIREM 724
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 92/184 (50%), Gaps = 2/184 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P +V+ +++ Y+K M A F++M R W ++L+G+++ +++E F
Sbjct: 67 MPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVF 126
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M G+E D T +L VC+ + +G+ +H V + +V + L+D+Y++
Sbjct: 127 VDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKG 186
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
+ +VFQ + ++ VSW++II G N + AL++F MQK + + L
Sbjct: 187 KRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVL 246
Query: 271 TACS 274
+C+
Sbjct: 247 RSCA 250
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW 231
CA L +G H ++ F+ V N L+ VY+ A VF +M R +VSW
Sbjct: 16 CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSW 75
Query: 232 NSIIVGFAVNGFVGEALEYFNLM 254
N +I G++ + + +A +FN+M
Sbjct: 76 NKMINGYSKSNDMFKANSFFNMM 98
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 4/140 (2%)
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M ISG P + +L V N R + +P +D V N +++ YS+
Sbjct: 32 MIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRD----VVSWNKMINGYSKSND 87
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
+ A F M R +VSWNS++ G+ NG +++E F M + + D +F L
Sbjct: 88 MFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKV 147
Query: 273 CSHAGLIEDGLQYFDIMKKI 292
CS G+Q I+ ++
Sbjct: 148 CSFLEDTSLGMQIHGIVVRV 167
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 153/282 (54%), Gaps = 26/282 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLL---------------SGC 90
V WTS IS + ++G +EA F +MR P I V++L GC
Sbjct: 236 VSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGC 295
Query: 91 A-----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR--GCDFWTALLNGFVKRDYF 143
+F + ++ TA MYAK G++ +A FD M W A+++G+ K Y
Sbjct: 296 VVKMGLEFEPDLLISLTA---MYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYT 352
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EA+ F+ M + D +T+ S + CA V +L + WM Y+ K +++++V V L
Sbjct: 353 NEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTAL 412
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D++++ G ++ AR+VF R + +V W+++IVG+ ++G +A++ F M++ ++
Sbjct: 413 IDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPND 472
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F G LTAC+H+GL+E+G + F M K Y + + +H+ C+
Sbjct: 473 VTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEARHQHYACV 513
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 19/252 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------- 94
W + I + +A ++RM+ G NP T +L C+ P
Sbjct: 137 WNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIF 196
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
++V V L+ +YAK GR++ A +VF+ + R WT++++G+ + EAL
Sbjct: 197 RLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALR 256
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M+ V+PD++ ++SVL +V L G +H V K + + +L +Y+
Sbjct: 257 IFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYA 316
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G + AR F +M ++ WN++I G+A NG+ EA+ F M +TD ++
Sbjct: 317 KCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRS 376
Query: 269 ALTACSHAGLIE 280
A+ AC+ G ++
Sbjct: 377 AILACAQVGSLD 388
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 2/183 (1%)
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
T ++ G + A VFD W A++ G+ ++F +A+E + MQ SGV
Sbjct: 107 TKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVN 166
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD T+ VL C+ V L +G +H + + F+ +V V N L+ +Y++ G +E AR V
Sbjct: 167 PDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIV 226
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F+ + R +VSW S+I G+ NG EAL F M++ K D ++ L A + +
Sbjct: 227 FEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDL 286
Query: 280 EDG 282
E G
Sbjct: 287 EQG 289
>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1174
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 125/211 (59%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
++ S +LL MYAK G ++ AT+ FD + D + ALL+G V+ EEA F+ MQ
Sbjct: 341 DLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQ 400
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+EPD T++S++ C+++ L G H V + +CN+L+D+Y++ G I+
Sbjct: 401 ACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKID 460
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
+RQVF +M R +VSWN++I G+ ++G EA F M+ F D+V+F + ACS
Sbjct: 461 LSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACS 520
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H+GL+ +G +FD M Y + P++EH+ C+
Sbjct: 521 HSGLVTEGKHWFDTMTHKYGILPRMEHYICM 551
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 117/269 (43%), Gaps = 24/269 (8%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLLS-------- 88
+K + V W + ++ + G A M+ +G P+ T V+LL
Sbjct: 159 AKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGAL 218
Query: 89 ------------GCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALL 134
C + V++ TALLDMYAK ++ A VF M R W+AL+
Sbjct: 219 FQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALI 278
Query: 135 NGFVKRDYFEEALEYFRVMQISGV-EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193
GFV D EA F+ M + G+ ++ S L VCA++ L +G +H + K
Sbjct: 279 GGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGI 338
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
++ N+L+ +Y++ G I A F + + +S+ +++ G NG EA F
Sbjct: 339 HADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKK 398
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDG 282
MQ + D + + ACSH ++ G
Sbjct: 399 MQACNMEPDIATMVSLIPACSHLAALQHG 427
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 7/202 (3%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ VSTAL+D+Y + R A VF MR W A+L G+ + A+ + MQ
Sbjct: 134 DLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQ 193
Query: 155 I-SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---VRVCNTLMDVYSRF 210
G+ P+ T++S+L + A L G +H Y + + N V + L+D+Y++
Sbjct: 194 DHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKC 253
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGA 269
+ +A +VF M R V+W+++I GF + + EA F +++ +G+ S A
Sbjct: 254 KQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASA 313
Query: 270 LTACSHAGLIEDGLQYFDIMKK 291
L C+ + G Q ++ K
Sbjct: 314 LRVCASLADLHMGTQLHALIAK 335
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
L+ + G++ LA VFD + D + AL+ + F A++ +R M V P+
Sbjct: 41 LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T VL C+ + L G +H + ++ V L+D+Y R AR VF +
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
M R +V+WN+++ G+A +G A+ + MQ
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQ 193
>gi|354805156|gb|AER41576.1| pentatricopeptide [Oryza brachyantha]
Length = 448
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 124/211 (58%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V+V+TALLDMYAK G++ A+ VFD M R W A++ + K +EA + F M
Sbjct: 151 DVVVATALLDMYAKSGQVAEASRVFDAMALRNTISWNAIIVCYGKHGRGKEAFDLFVWMM 210
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
G PD LT+ S+L+ CA++ + +H Y K+ +D ++V N L+ Y + G +
Sbjct: 211 RDGCCPDELTLASLLSSCADMAAAYEAIQLHAYTVKRGLQDFLQVGNALIMAYGKNGFVH 270
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A++ F +H LV+W+S++ FA G A+ F+ M + D ++F GAL+ACS
Sbjct: 271 EAKRAFGLIHNPDLVTWSSMVSSFAYLGLAKSAIHLFDRMVQQGIHADGIAFLGALSACS 330
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
HAGLIEDG +YF +M + Y++ P +H C+
Sbjct: 331 HAGLIEDGFKYFLLMVRDYKIDPTPQHLACL 361
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 25/216 (11%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
++ V+TAL D YAK G A VFD D W +++ + E+ + F
Sbjct: 38 GSDARVATALADAYAKSGSASCARRVFDETSLKDQVLWNVIISCYSSHGLVRESWDLFGS 97
Query: 153 MQISGVEPDYLTIISVLNV--------C---ANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
M+ +G+ D T ++++V C AN+ L +G H V + +V V
Sbjct: 98 MRCAGLCGDGFTFSALVSVRASSSSSSCYGHANLLLL-MGRSAHGIVIRLGLHLDVVVAT 156
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
L+D+Y++ G + A +VF M R +SWN+IIV + +G EA + F M +
Sbjct: 157 ALLDMYAKSGQVAEASRVFDAMALRNTISWNAIIVCYGKHGRGKEAFDLFVWMMRDGCCP 216
Query: 262 DEVSFTGALTACS-----------HAGLIEDGLQYF 286
DE++ L++C+ HA ++ GLQ F
Sbjct: 217 DELTLASLLSSCADMAAAYEAIQLHAYTVKRGLQDF 252
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H K + RV L D Y++ G AR+VF + V WN II ++ +G
Sbjct: 28 IHPLAVKSGSGSDARVATALADAYAKSGSASCARRVFDETSLKDQVLWNVIISCYSSHGL 87
Query: 244 VGEALEYFNLMQKGVFKTDEVSFT 267
V E+ + F M+ D +F+
Sbjct: 88 VRESWDLFGSMRCAGLCGDGFTFS 111
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 132/212 (62%), Gaps = 3/212 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
V++ ++D Y + G A ++FD MR W +++G+ + +F++A+E FR M+
Sbjct: 200 EVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMK 259
Query: 155 I-SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ P+Y+T++SVL + + +L +G W+H Y + + + + L+D+YS+ G I
Sbjct: 260 KGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGII 319
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A VF+R+ + +++W+++I GFA++G G+A++ F M++ + +V++ LTAC
Sbjct: 320 EKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTAC 379
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SHAGL+E+G +YF M + + P+IEH+GC+
Sbjct: 380 SHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCM 411
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 51/220 (23%)
Query: 114 MDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE---YFRVMQISGVEPDYLTIISV 168
+D A +F+ M R C W ++ GF + D + + + +M +EP+ T SV
Sbjct: 68 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSV 127
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDF--------------------KD------------- 195
L CA + G +H K F KD
Sbjct: 128 LKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIERE 187
Query: 196 ------------NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
V + N ++D Y R G + AR +F +M +R++VSWN++I G++ NGF
Sbjct: 188 MVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGF 247
Query: 244 VGEALEYFNLMQKGV-FKTDEVSFTGALTACSHAGLIEDG 282
+A+E F M+KG + + V+ L A S G +E G
Sbjct: 248 FKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELG 287
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN----GFVGEALEYFN 252
+R C T D++ R +++A ++F +M +R SWN+II GF+ + + L +
Sbjct: 55 LRFCAT-SDLHHRD--LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITL-FCE 110
Query: 253 LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+M + + +F L AC+ G I+ G Q
Sbjct: 111 MMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQ 142
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 128/212 (60%), Gaps = 4/212 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+ ++ T LLD+YAK G +D A VFD M R W AL++GF + EAL F+ M+
Sbjct: 139 DALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRME 198
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
I G +P+ ++++ L+ CA + G +H Y+ + F N +VCN ++D+Y++ G ++
Sbjct: 199 IDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVD 258
Query: 215 FARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A VF+ M ++ +V+WN++I+ FA++G +ALE F M + D+VS+ L AC
Sbjct: 259 KAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCAC 318
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+H GL+E+G + F+ M+ V P ++H+G +
Sbjct: 319 NHGGLVEEGFRLFNSMENC-GVKPNVKHYGSV 349
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 3/192 (1%)
Query: 102 TALLDMYA-KFGRMDLATVVFDVMR--GCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
+ LL++YA G + A + F +R + W A++ GF++ A +++ M
Sbjct: 42 SKLLELYALSLGNLSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSR 101
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
+ D LT VL CA V + +H ++ ++ F + + TL+DVY++ G I+ A +
Sbjct: 102 KVDALTCSFVLKACARVLARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEK 161
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF M KR + SWN++I GFA EAL F M+ FK +E+S GAL+AC+ G
Sbjct: 162 VFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGD 221
Query: 279 IEDGLQYFDIMK 290
++G + +K
Sbjct: 222 FKEGEKIHGYIK 233
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 21/211 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSN------ 96
W + IS + EA F RM + G P+ I+ + LS CA DF
Sbjct: 172 ASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGY 231
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEE 145
N V ++DMYAK G +D A +VF+ M + W ++ F +
Sbjct: 232 IKVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCK 291
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
ALE F M SGV PD ++ ++VL C + + G + + K NV+ +++D
Sbjct: 292 ALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVD 351
Query: 206 VYSRFGCIEFARQVFQRMHK-RTLVSWNSII 235
+ R G + A + M +V W +++
Sbjct: 352 LLGRAGRLHEAYDIVNSMPTVPDIVLWQTLL 382
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 148/294 (50%), Gaps = 21/294 (7%)
Query: 32 SIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA 91
++ T N S+ D V W S I+ + + G A F ++RL NP T V ++ CA
Sbjct: 484 ALTTFNRMSSRDI-VTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACA 542
Query: 92 ---DFP--------------SNNVMVSTALLDMYAKFGRMDLATVVF---DVMRGCDFWT 131
D ++ V AL+DMYAK G + A +F D + W
Sbjct: 543 LLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWN 602
Query: 132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191
++ +++ + +EA+ F M++ P+ +T +SVL A + G+ H + +
Sbjct: 603 VIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQM 662
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
F N V N+L+D+Y++ G + ++ ++F M + VSWN+++ G+AV+G A+ F
Sbjct: 663 GFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALF 722
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+LMQ+ + D VSF L+AC H GL+E+G + F M Y + P +EH+ C+
Sbjct: 723 SLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACM 776
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 26/269 (9%)
Query: 38 SKSTIDTT-----VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD 92
++S D+T + W S I + RS EA + M G P TF +L C
Sbjct: 82 ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141
Query: 93 FPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTAL 133
+ +V + L+DMY+K G + A VFD M D W A+
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAM 201
Query: 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193
+ G + + EA+++FR MQ+ GVEP ++++++ + + + +H YV ++DF
Sbjct: 202 IAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF 261
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
V N L+D+YS+ G ++ AR+VF +M + VSW +++ G+A NG E LE F+
Sbjct: 262 SSAVS--NGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDK 319
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M+ G + ++VS A A + +E G
Sbjct: 320 MKLGNVRINKVSAVSAFLAAAETIDLEKG 348
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 128/256 (50%), Gaps = 19/256 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL---------------LSGC 90
V W + ++ + +GC +E F +M+L + ++ V+ + GC
Sbjct: 295 VSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGC 354
Query: 91 A--DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
A ++++V+T L+ MYAK G + A +F ++G D W+A++ V+ Y EEA
Sbjct: 355 ALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEA 414
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F+ MQ ++P+ +T++S+L CA++ L +G +H + K D ++ L+ +
Sbjct: 415 LSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSM 474
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G A F RM R +V+WNS+I G+A G A++ F ++ D +
Sbjct: 475 YAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTM 534
Query: 267 TGALTACSHAGLIEDG 282
G + AC+ ++ G
Sbjct: 535 VGVVPACALLNDLDQG 550
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
T L+++Y+ F + DLA VFD W +++ + + + EALE + M G+E
Sbjct: 67 THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLE 126
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD T VL C L G+W H + ++ + +V + L+D+YS+ G ++ AR+V
Sbjct: 127 PDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREV 186
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
F +M KR +V+WN++I G + + EA+++F MQ
Sbjct: 187 FDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQ 222
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
S +YL +L+ C ++ L L +H + FK + + + L+++YS F +
Sbjct: 26 SSTYTNYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDL 81
Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLMQKGVFKTDEVSFTGALTACS 274
AR VF + + WNS+I + + EALE Y+ +++KG+ + D+ +FT L AC+
Sbjct: 82 ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGL-EPDKYTFTFVLKACT 140
Query: 275 HAGLIEDGLQY 285
A +++G+ +
Sbjct: 141 GALNLQEGVWF 151
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 140/275 (50%), Gaps = 24/275 (8%)
Query: 49 TSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDM- 107
T+ I + GC+ A F M P+ + + +++ C F N+V + + D
Sbjct: 137 TTLIGMYGGCGCVEFARKVFDEMH----QPNLVAWNAVITAC--FRGNDVAGAREIFDKM 190
Query: 108 --------------YAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFR 151
Y K G ++ A +F M D W+ ++ G F E+ YFR
Sbjct: 191 LVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFR 250
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
+Q +G+ P+ +++ VL+ C+ + G +H +V K + V V N L+D+YSR G
Sbjct: 251 ELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCG 310
Query: 212 CIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
+ AR VF+ M KR +VSW S+I G A++G EA+ FN M D +SF L
Sbjct: 311 NVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLL 370
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSHAGLIE+G YF MK++Y + P+IEH+GC+
Sbjct: 371 HACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCM 405
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 28/190 (14%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
+ L+ G+ + D ++ F M G V PD + V+ N R+L G MH
Sbjct: 65 FNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQA 124
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K + ++ V TL+ +Y GC+EFAR+VF MH+ LV+WN++I V A
Sbjct: 125 LKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAR 184
Query: 249 EYF-----------NLMQKGVFKT----------------DEVSFTGALTACSHAGLIED 281
E F N+M G K D+VS++ + +H G +
Sbjct: 185 EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNE 244
Query: 282 GLQYFDIMKK 291
YF +++
Sbjct: 245 SFLYFRELQR 254
>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 142/274 (51%), Gaps = 17/274 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-----------DFP 94
V W S IS + +A F M+ G P+ V LL C +F
Sbjct: 173 VAWGSLISGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVACGRCFDPYCQSKFEF- 231
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
NV+++T+L+DMYAK G M A +FD M R W +++ G+ + EEA+ F
Sbjct: 232 --NVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSD 289
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M G+ PD +T SV+ +G +H YV K F + + L+++Y++ G
Sbjct: 290 MLDLGIAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKTGN 349
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFTGALT 271
E A+++F+ + K+ ++W +I+G A +G +AL F MQ +G D +++ G L
Sbjct: 350 AESAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGVLY 409
Query: 272 ACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSH GL+E+G +YF M+ +Y + P +EH+GC+
Sbjct: 410 ACSHIGLVEEGQRYFAEMRDLYGLEPTVEHYGCM 443
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 119/254 (46%), Gaps = 33/254 (12%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------- 94
W S I + S +A + + M G +P + TF +L C+
Sbjct: 74 WNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVV 133
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
N+ VST LL MY G ++ VF+ + + W +L++GFV + F +A+E
Sbjct: 134 KTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRFSDAIE 193
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
FR MQ GV+P+ ++ +L C G Y + F+ NV + +L+D+Y+
Sbjct: 194 AFREMQSIGVKPNETIMVDLLVAC--------GRCFDPYC-QSKFEFNVILATSLIDMYA 244
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G + AR +F M +R LVSWNSII G++ NG EA+ F+ M D+V+F
Sbjct: 245 KCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDKVTFFS 304
Query: 269 ALTA-----CSHAG 277
+ A CS G
Sbjct: 305 VIRASMIQGCSQLG 318
>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
Length = 810
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 135/257 (52%), Gaps = 19/257 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSNNV-----------------MVSTALLDMYAK 110
F M+ G + + + T+LS P ++ ++ AL+DMY+K
Sbjct: 325 FREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSK 384
Query: 111 FGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
G +D A F + WTAL+ G+V+ EEAL+ F M+ +G+ PD T S+
Sbjct: 385 CGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSI 444
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
+ +++ +G+G +H Y+ + +K +V + L+D+Y++ GC++ A + F M +R
Sbjct: 445 IKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNS 504
Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
+SWN++I +A G A++ F M F D V+F L ACSH GL ++ ++YF +
Sbjct: 505 ISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHL 564
Query: 289 MKKIYRVSPQIEHHGCI 305
MK Y +SP EH+ C+
Sbjct: 565 MKHQYSISPWKEHYACV 581
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 117/268 (43%), Gaps = 27/268 (10%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS--GCADFPS---------- 95
WT + H +G +A F M G P +T T+L+ GC PS
Sbjct: 108 WTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCT-VPSLHPFAIKFGL 166
Query: 96 -NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+V V LLD Y K G + A VF M D + A++ G K +AL+ F
Sbjct: 167 DTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAA 226
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M+ +G+ + T S+L V A + L +G +H V + NV V N+L+D YS+ C
Sbjct: 227 MRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDC 286
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ R++F M +R VS+N II +A N L F MQK F + + L+
Sbjct: 287 LDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSV 346
Query: 273 CS-----------HAGLIEDGLQYFDIM 289
HA L+ GL D++
Sbjct: 347 AGSLPDVHIGKQIHAQLVLLGLASEDLL 374
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 9/185 (4%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVF--DVMRGCDFWTALLNGFVKRDYFEEALEYF 150
P N+ +L Y+ G + A +F R WT ++ +AL F
Sbjct: 69 MPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLF 128
Query: 151 RVMQISGVEPDYLTIISVLNVCA-NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
R M GV PD +T+ +VLN+ V +L H + K +V VCNTL+D Y +
Sbjct: 129 RAMLGEGVIPDRVTVTTVLNLPGCTVPSL------HPFAIKFGLDTHVFVCNTLLDAYCK 182
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G + AR+VF MH + V++N++++G + G +AL+ F M++ +F+
Sbjct: 183 HGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSI 242
Query: 270 LTACS 274
LT +
Sbjct: 243 LTVAA 247
>gi|449459636|ref|XP_004147552.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Cucumis sativus]
gi|449484988|ref|XP_004157038.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Cucumis sativus]
Length = 495
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 131/220 (59%), Gaps = 6/220 (2%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEY 149
+ P + + L+ KFG + A VFD MR WTA+++G+ + + EEA
Sbjct: 175 EMPDRSSVTWNVLITGLVKFGELKRARDVFDQMPMRTVVSWTAIIDGYTRLNRHEEAAGL 234
Query: 150 F-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-DNVRVCNTLMDVY 207
F R++ G+EP+ +T++++ +N+ L + +H Y K+ FK +VR+ N+L+D Y
Sbjct: 235 FWRMVAHFGMEPNEVTLLTIFPAISNLGALKLCQSVHAYAEKKGFKVSDVRIANSLIDCY 294
Query: 208 SRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
++ GCI A +VF+ M + LVSW SII GF ++G EA+E F +M+K + + V+
Sbjct: 295 AKCGCINSASKVFEEMSAEIKNLVSWTSIISGFTMHGMGKEAMESFEIMEKEGHEPNRVT 354
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F ++ACSH GL+E+GL++F+ M Y++ P I H+G +
Sbjct: 355 FLSIVSACSHGGLVEEGLEFFEKMVAEYQIKPDIMHYGSL 394
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 129/275 (46%), Gaps = 28/275 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRL-YGTNPSHITFVTLLSGCAD---------- 92
T V WT+ I + R EAA F RM +G P+ +T +T+ ++
Sbjct: 211 TVVSWTAIIDGYTRLNRHEEAAGLFWRMVAHFGMEPNEVTLLTIFPAISNLGALKLCQSV 270
Query: 93 --------FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKR 140
F ++V ++ +L+D YAK G ++ A+ VF+ M + WT++++GF
Sbjct: 271 HAYAEKKGFKVSDVRIANSLIDCYAKCGCINSASKVFEEMSAEIKNLVSWTSIISGFTMH 330
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRV 199
+EA+E F +M+ G EP+ +T +S+++ C++ + GL + + V + K ++
Sbjct: 331 GMGKEAMESFEIMEKEGHEPNRVTFLSIVSACSHGGLVEEGLEFFEKMVAEYQIKPDIMH 390
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKR--TLVSWNSIIVGFAVNGFV--GEALEYFNLMQ 255
+L+D+ R G IE A ++ + K ++V W +++ + +G V E + L
Sbjct: 391 YGSLIDMLGRAGRIEEAEKIALEIPKEIASVVIWRTLLGACSFHGNVSMAERVTQRILNM 450
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
+G + D V + A G E + D K
Sbjct: 451 EGAYGGDYVLMSNIFAAAGKYGDAERWRRLMDSSK 485
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 149 YFRVMQISGVEPDYLTIIS--VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
Y + Q + P Y T +L+ CA++ +G G +H K F +V V ++ +
Sbjct: 100 YQPLRQFPRIPPSYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRM 159
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
Y+ G + A +VF M R+ V+WN +I G G + A + F+ M
Sbjct: 160 YAASGFLLDAMKVFDEMPDRSSVTWNVLITGLVKFGELKRARDVFDQM 207
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 140/275 (50%), Gaps = 24/275 (8%)
Query: 49 TSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDM- 107
T+ I + GC+ A F M P+ + + +++ C F N+V + + D
Sbjct: 145 TTLIGMYGGCGCVEFARKVFDEMH----QPNLVAWNAVITAC--FRGNDVAGAREIFDKM 198
Query: 108 --------------YAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFR 151
Y K G ++ A +F M D W+ ++ G F E+ YFR
Sbjct: 199 LVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFR 258
Query: 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
+Q +G+ P+ +++ VL+ C+ + G +H +V K + V V N L+D+YSR G
Sbjct: 259 ELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCG 318
Query: 212 CIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
+ AR VF+ M KR +VSW S+I G A++G EA+ FN M D +SF L
Sbjct: 319 NVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLL 378
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSHAGLIE+G YF MK++Y + P+IEH+GC+
Sbjct: 379 HACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCM 413
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 28/190 (14%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYV 188
+ L+ G+ + D ++ F M G V PD + V+ N R+L G MH
Sbjct: 73 FNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQA 132
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 248
K + ++ V TL+ +Y GC+EFAR+VF MH+ LV+WN++I V A
Sbjct: 133 LKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAR 192
Query: 249 EYF-----------NLMQKGVFKT----------------DEVSFTGALTACSHAGLIED 281
E F N+M G K D+VS++ + +H G +
Sbjct: 193 EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNE 252
Query: 282 GLQYFDIMKK 291
YF +++
Sbjct: 253 SFLYFRELQR 262
>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 730
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 147/280 (52%), Gaps = 20/280 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
+ W + +SG EA + MR YG + + + L C+
Sbjct: 296 ITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHGS 355
Query: 92 ---DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
F V AL+ MY++ + A +F R + W ++L+G+ D EEA
Sbjct: 356 AIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEA 415
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLMD 205
FR M +SG+EP+Y+TI S+L +CA V L G H Y+ ++ FKD + + N+L+D
Sbjct: 416 SFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVD 475
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y+R G + A+++F + +R V++ S+I G+ + G EAL+ F+ M+K K D V+
Sbjct: 476 MYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVT 535
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH+GL+ +G++ F++M Y + P++EH C+
Sbjct: 536 MVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACM 575
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W L++ +V+ EAL ++ M G+ PD T SVL C + G +H +
Sbjct: 162 WNLLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASIN 221
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
N+ V N+L+ +Y++ G + AR +F+ M +R VSWN++I G+A G EA E
Sbjct: 222 ASCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFE 281
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
F M+ + + +++ C +G E+ L+ M+
Sbjct: 282 LFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMR 322
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 122/308 (39%), Gaps = 58/308 (18%)
Query: 34 QTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD- 92
T S I + W IS + R+G EA + +M G P T+ ++L C +
Sbjct: 148 HTITENSNILHPLPWNLLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEK 207
Query: 93 ----FPSN------------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALL 134
F N+ V +L+ MYAK G + A +F+ M D W ++
Sbjct: 208 LDIAFGKKLHASINASCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMI 267
Query: 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLT------------------------------ 164
+G+ + ++EA E F M++ G+E + +T
Sbjct: 268 SGYASKGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGID 327
Query: 165 -----IISVLNVCANVRTLGIGLWMHRYVPKQ--DFKDNVRVCNTLMDVYSRFGCIEFAR 217
I L C+++ + +G +H + D DNV+ N L+ +YSR + A
Sbjct: 328 MDSVATIIGLGACSHIGAIKLGREIHGSAIRSFYDGVDNVK--NALITMYSRCKYLRHAY 385
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+FQ + +++WNS++ G+ EA F M + + V+ L C+
Sbjct: 386 NLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVA 445
Query: 278 LIEDGLQY 285
++ G ++
Sbjct: 446 NLQHGKEF 453
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%)
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
N+++L G +H + F+ + + L+ Y+ F + A + + + + WN
Sbjct: 105 NLKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNL 164
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+I + NG GEAL + M + D+ ++ L AC
Sbjct: 165 LISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKAC 204
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 130/218 (59%), Gaps = 7/218 (3%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKRDYFEEALEY 149
P + + ++D A+ G + LA FD M R W ++L + + E L
Sbjct: 231 PERDAVSWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLML 290
Query: 150 FRVMQISGVE--PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
F M + G E P+ T++SVL CAN+ L +G+W+H ++ + K +V + L+ +Y
Sbjct: 291 FGKM-VEGREAVPNEATLVSVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMY 349
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
++ G ++ A+ VF M R++VSWNS+I+G+ ++G +ALE F M+K + ++ +F
Sbjct: 350 AKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFI 409
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+AC+HAG++ +G YFD+M+++Y++ P++EH+GC+
Sbjct: 410 SVLSACTHAGMVMEGWWYFDLMQRVYKIEPKVEHYGCM 447
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 30/208 (14%)
Query: 117 ATVVFDVMRGCDFW--TALLNGFVKRDYFEEALE-YFRVMQISGVEPDYLTIISVLNVCA 173
AT +FD + D + ++ + ++ F AL Y+ M V P++ T ++ VC
Sbjct: 59 ATFLFDHLHHPDAFHCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCT 118
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
++ + GL H + K F ++ N+L+ +YS FG I AR VF LVS+NS
Sbjct: 119 DIGSFREGLKGHARIVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNS 178
Query: 234 IIVGFAVNGFVGEALEYFNLM-----------------------QKGVFKT----DEVSF 266
+I G+ NG +G A + FN M +F+T D VS+
Sbjct: 179 MIDGYVKNGEIGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSW 238
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYR 294
+ C+ G + +++FD M R
Sbjct: 239 NCMIDGCARVGNVSLAVKFFDRMPAAVR 266
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 32/244 (13%)
Query: 64 AALEF--TRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMVSTAL 104
AAL F +M P+H TF L+ C D S +++ +L
Sbjct: 89 AALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFREGLKGHARIVKFGFGSDLFARNSL 148
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+ MY+ FGR+ A +VFD D + ++++G+VK A + F M + D
Sbjct: 149 IRMYSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNGEIGAARKVFNEMP----DRDV 204
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
L+ ++ V L + +P++D N ++D +R G + A + F R
Sbjct: 205 LSWNCLIAGYVGVGDLDAANELFETIPERD----AVSWNCMIDGCARVGNVSLAVKFFDR 260
Query: 223 MHK--RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLI 279
M R +VSWNS++ A GE L F M +G +E + LTAC++ G +
Sbjct: 261 MPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACANLGKL 320
Query: 280 EDGL 283
G+
Sbjct: 321 SMGM 324
>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 126/219 (57%), Gaps = 11/219 (5%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+V+ AL+DMYAK G A F M + W +++ + +EALE FR M
Sbjct: 198 DVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHARAGELQEALELFREM 257
Query: 154 -QISGVE----PDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVCNTLMDV 206
Q G PD T ++VL CA + L G W+H Y+ + +D V V N L+D+
Sbjct: 258 LQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVHAYIVRTGRDAAAGV-VGNALIDM 316
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G +E A +VF M +R + ++ S+I G A++G EAL F M++ + +EV+F
Sbjct: 317 YAKCGAVEQAAEVFDAMTRRDVYTYTSMISGLAMHGRGEEALALFGDMRQARVRPNEVTF 376
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L+AC HAG IEDGL++FD M +++ V+P IEH+GC+
Sbjct: 377 LGVLSACCHAGNIEDGLRHFDAMAELHGVTPGIEHYGCV 415
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 118/292 (40%), Gaps = 23/292 (7%)
Query: 7 ATILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEA-A 65
A + P+ P +Q + K +++ S T +S+ RH G +A A
Sbjct: 6 AIAMDAPYPPARQPSS----KPTAAPLRSPGRASNPGTAPPLAASLLRH---GAPHDAGA 58
Query: 66 LEFTRMRLYGTNPSHITFVTLL---SGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD 122
L RL T + L S ++ V AL+ +Y GR +A+ +F
Sbjct: 59 LRAVLKRLAATASAPCEAAPALHAHSAKLGLYRHHRGVRDALVALYLACGRRGVASDLFA 118
Query: 123 VMRGCDF-----WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
G WTA++ + F EA E F M G +
Sbjct: 119 GAGGGPAPDVVSWTAMVTWHARLGLFREAAELFLAMADDGAVVVDAVAAAAAFAACAGAG 178
Query: 178 -LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSII 235
L + +HR V + +V CN L+D+Y++ G A + F+ M + LV+WN++I
Sbjct: 179 ELVLAREVHRRVLEAGVALDVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMI 238
Query: 236 VGFAVNGFVGEALEYFN--LMQKGVFKT---DEVSFTGALTACSHAGLIEDG 282
A G + EALE F L Q+G + D+ +F L AC+ G ++ G
Sbjct: 239 SAHARAGELQEALELFREMLQQQGCTSSPLPDDATFVAVLGACARLGALDAG 290
>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 149/291 (51%), Gaps = 31/291 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V W+++IS + + G EA +M G P+ +T +++LSGCA
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390
Query: 93 ---FP--------SNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGF 137
+P + MV L+DMYAK ++D A +FD + R WT ++ G+
Sbjct: 391 AIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGY 450
Query: 138 VKRDYFEEALEYFRVM--QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFK 194
+ +ALE M + P+ TI L CA++ L IG +H Y + Q
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNA 510
Query: 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+ V N L+D+Y++ G I AR VF M + V+W S++ G+ ++G+ EAL F+ M
Sbjct: 511 VPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEM 570
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++ FK D V+ L ACSH+G+I+ G++YF+ MK ++ VSP EH+ C+
Sbjct: 571 RRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACL 621
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 122/257 (47%), Gaps = 20/257 (7%)
Query: 47 QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------- 95
W S I + +GC + F M P + TF + C + S
Sbjct: 94 HWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALS 153
Query: 96 ------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEAL 147
+NV V AL+ MY++ + A VFD M D W +++ + K + AL
Sbjct: 154 LVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVAL 213
Query: 148 EYF-RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
E F R+ G PD +T+++VL CA++ T +G +H + + N+ V N L+D+
Sbjct: 214 EMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDM 273
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G ++ A VF M + +VSWN+++ G++ G +A+ F MQ+ K D V++
Sbjct: 274 YAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTW 333
Query: 267 TGALTACSHAGLIEDGL 283
+ A++ + GL + L
Sbjct: 334 SAAISGYAQRGLGYEAL 350
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 66/160 (41%), Gaps = 1/160 (0%)
Query: 126 GCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185
G W +L+ + + L F +M PD T V C + ++ G H
Sbjct: 91 GVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAH 150
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
F NV V N L+ +YSR + AR+VF M +VSWNSII +A G
Sbjct: 151 ALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPK 210
Query: 246 EALEYFNLMQKGV-FKTDEVSFTGALTACSHAGLIEDGLQ 284
ALE F+ M + D ++ L C+ G G Q
Sbjct: 211 VALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQ 250
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 140/280 (50%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV------ 98
V W + I+ H ++G E F M P T+ ++L C+ + N
Sbjct: 444 AVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHN 503
Query: 99 -----------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
V AL+DMY K G ++ A + D + W A++ GF + E+
Sbjct: 504 RIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSED 563
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A +F M V+PD T VL+ CAN+ ++G+G +H + K + +V + +TL+D
Sbjct: 564 AHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVD 623
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ G ++ + VF++ + V+WN++I G+A +G EAL YF MQ + + +
Sbjct: 624 MYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHAT 683
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F L AC+H G I+ GL YF+ M Y + PQIEH+ C+
Sbjct: 684 FVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCM 723
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 103/191 (53%), Gaps = 2/191 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
+V+ +ALLDMYAK R+D + +F + ++ W+A++ G V+ D LE F+ M
Sbjct: 209 KDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEM 268
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q G+ SV CA + L +G +H + K DF ++ V +D+Y++ G +
Sbjct: 269 QKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSL 328
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A+++F + K +L +N+IIVG N EAL++F L+ K +E+S +GA +AC
Sbjct: 329 ADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSAC 388
Query: 274 SHAGLIEDGLQ 284
+ DG Q
Sbjct: 389 ASIKGDLDGRQ 399
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 21/237 (8%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCA------------------DFPSNNVMVSTALLDMYA 109
F M+ G S + ++ CA DF S+ + V TA LDMYA
Sbjct: 265 FKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSD-ITVGTATLDMYA 323
Query: 110 KFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167
K G + A +F+ + + A++ G V+ + EAL++F+++ SG+ + +++
Sbjct: 324 KCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSG 383
Query: 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT 227
+ CA+++ G +H K + N+ V N+++D+Y + + A +F M +R
Sbjct: 384 AFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRD 443
Query: 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
VSWN++I NG E L F M + + D+ ++ L ACS + G++
Sbjct: 444 AVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGME 500
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T ++ C++ +L G H + F +V + N LM +Y R + +A +VF++M
Sbjct: 45 TFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKM 104
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYF 251
+R ++S+N++I G+A G + A E+F
Sbjct: 105 SQRDVISYNTMISGYADAGEMNLANEFF 132
>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
Length = 526
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 153/300 (51%), Gaps = 19/300 (6%)
Query: 25 LKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFV 84
+K R S + K + + W + +S +C+ + F RM+ P T
Sbjct: 85 IKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLA 144
Query: 85 TLLSGCA-----DFP------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGC 127
+LS C+ DF N++ V++ L+DMY+K G++ +A +F+ M
Sbjct: 145 VILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTER 204
Query: 128 DF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185
D W ++++G +EA ++F+ M+ +G+ P + S++N C+ + ++ G +H
Sbjct: 205 DVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIH 264
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
V K + NV V + L+D+Y++ G ++ AR F M + +V+WN +I G+A NG
Sbjct: 265 AQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGD 324
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+A+E F M K D V+F LT CSH+GL++ + +F+ M+ Y + P EH+ C+
Sbjct: 325 KAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCL 384
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 17/251 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
T V W I+ + G +A + M+ G P+ +T+ LL+ C + +V + A
Sbjct: 38 TIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASC--IKARDVHSARA 95
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
+ D K R + T W LL+G+ + + ++ +E FR MQ V+PD
Sbjct: 96 MFD---KISRPSVTT-----------WNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRT 141
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T+ +L+ C+ + L G +H + +++ V + L+D+YS+ G I AR +F +M
Sbjct: 142 TLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKM 201
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
+R +V WNSII G ++ EA ++F M++ E S+ + +CS I G
Sbjct: 202 TERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGR 261
Query: 284 Q-YFDIMKKIY 293
Q + +MK Y
Sbjct: 262 QIHAQVMKDGY 272
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 7/109 (6%)
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEF--ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
++ F + V N+L+D+Y++ C+E A +VF+ + T+VSWN +I GF G +A
Sbjct: 1 RKGFGSDQHVGNSLIDMYTK--CVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKA 58
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
+E +LMQ+ F+ +EV+++ L +C A + FD KI R S
Sbjct: 59 VEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFD---KISRPS 104
>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Glycine max]
Length = 579
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 133/213 (62%), Gaps = 4/213 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+ ++ TA++D+Y+ R A VFD M R W +++ ++ + +AL F VMQ
Sbjct: 138 DTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQ 197
Query: 155 ISG--VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
S EPD +T + +L CA++ L G +H Y+ ++ ++D + +CN+L+ +YSR GC
Sbjct: 198 GSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDALNLCNSLISMYSRCGC 257
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ A +VF+ M + +VSW+++I G A+NG+ EA+E F M + D+ +FTG L+A
Sbjct: 258 LDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQTFTGVLSA 317
Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
CS++G++++G+ +F M + + V+P + H+GC+
Sbjct: 318 CSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCM 350
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
D ++ L +R M+ G+ D L+ + C L G+ +H + K + + +
Sbjct: 83 DSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCIRFLYLPGGVQVHCNIFKDGHQWDTLLL 142
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
+MD+YS A +VF M R V+WN +I N +AL F++MQ +K
Sbjct: 143 TAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYK 202
Query: 261 T--DEVSFTGALTACSHAGLIEDGLQYFD-IMKKIYR 294
D+V+ L AC+H +E G + IM++ YR
Sbjct: 203 CEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYR 239
>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
Length = 635
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 142/276 (51%), Gaps = 20/276 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WT I+ + ++ EA M PS TF + L
Sbjct: 129 VSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHAL 188
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+V V +ALLDMYA+ +MD+A VFD + + W AL+ GF ++ E
Sbjct: 189 AVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETT 248
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F MQ +G + T SV + A + L G W+H ++ K K V NT++ +
Sbjct: 249 LMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGM 308
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G + AR+VF R+ +R LV+WN+++ FA G EA+ +F ++K + ++++F
Sbjct: 309 YAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITF 368
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
LTACSH GL+++G QYFD+MK Y V P+I+H+
Sbjct: 369 LSVLTACSHGGLVKEGKQYFDMMKD-YNVEPEIDHY 403
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S++ CA + L +H ++ + + + N+L+ +Y + G + AR VF + R
Sbjct: 67 SIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTR 126
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
+VSW +I G+A N EAL M + F+ +FT L A G
Sbjct: 127 DVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACG 177
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 152/311 (48%), Gaps = 51/311 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSNNV---- 98
V WT IS + + +A F+ + G P V +S C D + +
Sbjct: 320 VSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGM 379
Query: 99 ----------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK------- 139
+V AL+DMY++ G +++A VF M D WT+LLNGF+K
Sbjct: 380 VFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAA 439
Query: 140 RDYFEE------------------------ALEYFRVMQISGVE-PDYLTIISVLNVCAN 174
R F+E LE F+ M+ G + P +TI++VL+ CA+
Sbjct: 440 RRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCAD 499
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ +G +H YV K + +V V N LMD+Y++ G + A ++FQ M KR + SW ++
Sbjct: 500 IGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTM 559
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I G A++G ALE F+ M K +EV+ L+ACSHAGL+ +G F M + +
Sbjct: 560 ISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHG 619
Query: 295 VSPQIEHHGCI 305
+ P+I+H+GC+
Sbjct: 620 IKPKIQHYGCM 630
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 128/217 (58%), Gaps = 3/217 (1%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEY 149
+ P +V+ T+++ YA G + A +FD+M G + W ++ G+V ++ EAL+
Sbjct: 217 EMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQC 276
Query: 150 FRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M V+P+ ++S+L+ CA++ L G W+H Y+ K + + L+D+Y+
Sbjct: 277 FNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYA 336
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G I+ AR+VF +HKR L++W S+I G +++G E L F+ M FK D+++ G
Sbjct: 337 KCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLG 396
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L CSH+GL+E+GL F M ++ + P++EH+GC+
Sbjct: 397 VLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCL 433
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 104/257 (40%), Gaps = 52/257 (20%)
Query: 78 PSHITFVTLLSGCADFP--------------SNNVMVSTALLDMYAKFGRMDLATVVFDV 123
PSH TFV LL + N + L+ Y + A +VFD
Sbjct: 53 PSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQ 112
Query: 124 MRGCD---FWTALLNGFVKRDYFEEALEYFRVMQISG--VEPDYLTIISVLNVCANVRTL 178
W ++ + K +E+L F M G D T V C+ TL
Sbjct: 113 FPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTL 172
Query: 179 -GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
G G +H V K ++ ++ V N+L+++YS F + A++VF M +R +++W S++ G
Sbjct: 173 RGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKG 232
Query: 238 FA--------------------------VNGFVG-----EALEYFN-LMQKGVFKTDEVS 265
+A V G+VG EAL+ FN ++ K +E
Sbjct: 233 YAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAV 292
Query: 266 FTGALTACSHAGLIEDG 282
L+AC+H G ++ G
Sbjct: 293 LVSILSACAHLGALDQG 309
>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 758
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 146/290 (50%), Gaps = 30/290 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ WTS++S +G ++ F M P+ T + LS C + S
Sbjct: 235 ISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSL 294
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK-----RD 141
+N+ V +LL +Y K G + A +F+ M W A++ G + +D
Sbjct: 295 CIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKD 354
Query: 142 YFE------EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195
EAL+ F + +SG++PD T+ SVL+VC+ + + G +H K F
Sbjct: 355 NLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLS 414
Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
+V V +L+ +YS+ G IE A + F M RT+++W S+I GF+ +G +AL F M
Sbjct: 415 DVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMS 474
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ + V+F G L+ACSHAG++ L YF+IM+K Y++ P ++H+ C+
Sbjct: 475 LAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECM 524
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 6/203 (2%)
Query: 88 SGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+GC D N V + L+++YAK G M+ A VFD M R WT L+ GFV+ +
Sbjct: 96 TGCHD----NFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQPKH 151
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F+ M +G P T+ +VL+ C+++++L +G H Y+ K + V + L
Sbjct: 152 AIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCS 211
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+YS+ G +E A + F R+ ++ ++SW S + A NG + L F M K +E +
Sbjct: 212 LYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFT 271
Query: 266 FTGALTACSHAGLIEDGLQYFDI 288
T AL+ C +E G Q + +
Sbjct: 272 LTSALSQCCEILSLELGTQVYSL 294
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%)
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
+ +L C + R+ +H +V K DN V + L++VY++ G +E AR+VF M +
Sbjct: 71 VPLLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLR 130
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
R +V+W +++VGF N A+ F M + + L ACS ++ G Q+
Sbjct: 131 RNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQF 190
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 23/207 (11%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
T + WTS I+ + G +A F M L G P+ +TFV +LS C S+ MVS A
Sbjct: 446 TMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSAC----SHAGMVSQA 501
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
L ++ + + D + +++ FV+ E+AL + + M EP
Sbjct: 502 L-------NYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKMN---YEPSEF 551
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY---SRFGCIEFARQVF 220
+ + C + L +G + + KD L+++Y RF + R++
Sbjct: 552 IWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDP-ETYVLLLNMYLSAERFEDVSRVRKMM 610
Query: 221 QRMHKRTLVSWNSI-----IVGFAVNG 242
+ L W+ I + F NG
Sbjct: 611 EEEKVGKLKDWSWISIKDKVYSFKTNG 637
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 131/216 (60%), Gaps = 4/216 (1%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P + + +++ YAK G+MD+A +F M + WT +++G+V+ +EAL+ F
Sbjct: 205 IPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLF 264
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-DNVRVCNTLMDVYSR 209
MQ S VEPD +++ + L+ CA + L G W+H Y+ K + D+V C L+D+Y++
Sbjct: 265 HEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGC-VLIDMYAK 323
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G + A +VF+ + ++++ +W ++I G+A +G EA+ F MQK K + ++FT
Sbjct: 324 CGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTV 383
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
LTACS+ GL+E+G F M++ Y + P IEH+GC+
Sbjct: 384 LTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCV 419
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 33/199 (16%)
Query: 117 ATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A +VFD D W ++ GF D E +L ++ M + T S+L C+N
Sbjct: 97 AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSN 156
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ L +H + K ++++V N+L++ Y+ G + A +F R+ K VSWNS+
Sbjct: 157 LSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSV 216
Query: 235 IVGFA--------------------------VNGFV-----GEALEYFNLMQKGVFKTDE 263
I G+A ++G+V EAL+ F+ MQ + D
Sbjct: 217 IKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDN 276
Query: 264 VSFTGALTACSHAGLIEDG 282
VS AL+AC+ G +E G
Sbjct: 277 VSLANALSACAQLGALEQG 295
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 154/314 (49%), Gaps = 57/314 (18%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN------- 96
+ V W + +S + ++G E F M G P T+VT++S C+
Sbjct: 224 SVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLV 283
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYF 143
N V TALLDMYAK G + A +FD + R W A+++ + +
Sbjct: 284 RTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNL 343
Query: 144 EEALEYFRVM----------QISG----------------------VEPDYLTIISVLNV 171
+ A E F M I+G + PD +T++SV++
Sbjct: 344 DSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISA 403
Query: 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW 231
C ++ L +G W+ R++ + K ++ N ++ +YSR G +E A++VFQ M R +VS+
Sbjct: 404 CGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSY 463
Query: 232 NSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
N++I GFA +G EA+ + M++G + D V+F G LTACSHAGL+E+G + F+ +K
Sbjct: 464 NTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK- 522
Query: 292 IYRVSPQIEHHGCI 305
P I+H+ C+
Sbjct: 523 ----DPAIDHYACM 532
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 37/226 (16%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P NV+ TA++ YAK ++ A FD M R W A+L+G+ + EE L F
Sbjct: 189 MPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLF 248
Query: 151 RVMQISGVEPDYLTIISVLNVCAN----------VRTL---------------------- 178
M +G+EPD T ++V++ C++ VRTL
Sbjct: 249 DEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKC 308
Query: 179 -GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
IG + ++++V N ++ Y+R G ++ AR++F M R +V+WNS+I G
Sbjct: 309 GSIGAARRIFDELGAYRNSV-TWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAG 367
Query: 238 FAVNGFVGEALEYFN-LMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+A NG A+E F ++ DEV+ ++AC H G +E G
Sbjct: 368 YAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG 413
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 43/187 (22%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM----RGCDFWTALLNGFVKRDYFEEALEYF 150
++ V A++DMYA+ G + A VFD + R W A+++G+ K +
Sbjct: 127 GSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWE--------- 177
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+ G W+ +P++ NV ++ Y++
Sbjct: 178 --------------------------SEGQAQWLFDVMPER----NVITWTAMVTGYAKV 207
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
+E AR+ F M +R++VSWN+++ G+A NG E L F+ M + DE ++ +
Sbjct: 208 KDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVI 267
Query: 271 TACSHAG 277
+ACS G
Sbjct: 268 SACSSRG 274
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
F MQ GV PD ++ N GIG H +V K + V N ++D+Y+R
Sbjct: 88 FEHMQGCGVRPDAFVYPILIKSAGNG---GIGF--HAHVLKLGHGSDAFVRNAVIDMYAR 142
Query: 210 FGCIEFARQVFQRM--HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
G I AR+VF + ++R + WN+++ G+ G+A F++M + + +++T
Sbjct: 143 LGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMP----ERNVITWT 198
Query: 268 GALTACSHAGLIEDGLQYFDIMKKIYRVS 296
+T + +E +YFD M + VS
Sbjct: 199 AMVTGYAKVKDLEAARRYFDCMPERSVVS 227
>gi|255594521|ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223520840|gb|EEF26277.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 147/313 (46%), Gaps = 53/313 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN-------- 97
V W S I+ + + G EA F+RM P T ++LS CA+ + N
Sbjct: 170 VTWNSMITGYSQHGFDKEALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSY 229
Query: 98 ------------------------------------------VMVSTALLDMYAKFGRMD 115
V+ TALLD Y K G +
Sbjct: 230 IIRTEFDISGVVQNALISMYAKTGGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNIT 289
Query: 116 LATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173
A +FD ++ D WTA++ G+V+ ++A+E FR+M G P+ T+ ++L+V +
Sbjct: 290 PARHIFDSLKDSDVVAWTAMIVGYVQNGLNDDAMELFRIMAKEGPRPNSFTLAAMLSVSS 349
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-RTLVSWN 232
NV +L G +H + +V V N L+ +Y++ G I A+QVF + + + VSW
Sbjct: 350 NVASLNHGKQIHASAIRSGENLSVSVGNALITMYAKAGSITDAQQVFNLIQRNKDTVSWT 409
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
S+I+ +G E++E F M K D +++ G L+AC+H GL+E G YF++M I
Sbjct: 410 SMIIALGQHGLGQESIELFEKMLALGIKPDHITYVGVLSACTHVGLVEQGRGYFNLMTSI 469
Query: 293 YRVSPQIEHHGCI 305
+++ P + H+ C+
Sbjct: 470 HKIEPTLSHYACM 482
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 127/323 (39%), Gaps = 83/323 (25%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
+V WT+ I + + G A F M P+ T + + CA
Sbjct: 37 SVSWTTMIVGYNQMGRFESAIKMFVAMMKDKVLPTQFTVTNVFASCAALGALDIGKKIHS 96
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVMR------------------GCDF 129
S V V+ +LL+MYAK G +A +VFD MR D
Sbjct: 97 FVIKLGLSGCVPVANSLLNMYAKAGDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADL 156
Query: 130 ---------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
W +++ G+ + + +EALE F M ++PD T+ S+L+ CAN
Sbjct: 157 ALAQFEQMSERDVVTWNSMITGYSQHGFDKEALELFSRMLEDSLKPDRFTLASILSACAN 216
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF------------------- 215
+ L +G +H Y+ + +F + V N L+ +Y++ G +E
Sbjct: 217 IENLNLGKQIHSYIIRTEFDISGVVQNALISMYAKTGGVEIAQSIVEQSGISDLNVIAFT 276
Query: 216 --------------ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
AR +F + +V+W ++IVG+ NG +A+E F +M K +
Sbjct: 277 ALLDGYVKLGNITPARHIFDSLKDSDVVAWTAMIVGYVQNGLNDDAMELFRIMAKEGPRP 336
Query: 262 DEVSFTGALTACSHAGLIEDGLQ 284
+ + L+ S+ + G Q
Sbjct: 337 NSFTLAAMLSVSSNVASLNHGKQ 359
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 33/205 (16%)
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
+L YAK G + A VFD + R WT ++ G+ + FE A++ F M V P
Sbjct: 12 ILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMFVAMMKDKVLPT 71
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
T+ +V CA + L IG +H +V K V V N+L+++Y++ G A+ VF
Sbjct: 72 QFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKAGDSVMAKIVFD 131
Query: 222 RMHKRTL-------------------------------VSWNSIIVGFAVNGFVGEALEY 250
RM R++ V+WNS+I G++ +GF EALE
Sbjct: 132 RMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYSQHGFDKEALEL 191
Query: 251 FNLMQKGVFKTDEVSFTGALTACSH 275
F+ M + K D + L+AC++
Sbjct: 192 FSRMLEDSLKPDRFTLASILSACAN 216
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
NT++ Y++ G + A VF + R VSW ++IVG+ G A++ F M K
Sbjct: 10 NTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMFVAMMKDKVL 69
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ + T +C+ G + DI KKI+ ++ GC+
Sbjct: 70 PTQFTVTNVFASCAALGAL-------DIGKKIHSFVIKLGLSGCV 107
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
TV WTS I + G E+ F +M G P HIT+V +LS C T +
Sbjct: 405 TVSWTSMIIALGQHGLGQESIELFEKMLALGIKPDHITYVGVLSAC-----------THV 453
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
+ G +L T + + + +++ F + +EA + M I EPD +
Sbjct: 454 GLVEQGRGYFNLMTSIHKIEPTLSHYACMIDLFGRAGLLQEAFSFIENMPI---EPDVIA 510
Query: 165 IISVLNVC 172
S+L+ C
Sbjct: 511 WGSLLSSC 518
>gi|296087773|emb|CBI35029.3| unnamed protein product [Vitis vinifera]
Length = 1596
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 142/265 (53%), Gaps = 24/265 (9%)
Query: 65 ALEFTRMRLYGTN--PSHITFVTLLSGCAD------------------FPSNNVMVSTAL 104
AL + ++ L N P TF ++S C + S++ V TAL
Sbjct: 88 ALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGVASSDRHVQTAL 147
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+ YA+ M A +FD + D W LLNG+V+R EAL FR M +SGVEPD
Sbjct: 148 VRFYAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLVSGVEPDE 207
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
+ + L CA + L G W+H YV K+ + + +V + L+D+Y++ GCI+ + +VF+
Sbjct: 208 FCLTTALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEVFE 267
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFTGALTACSHAGLIE 280
M KR + SW+++I GFA++G V +A++ MQ + + D V G + AC+HAGL E
Sbjct: 268 GMTKRNVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLRPDGVVLLGVIMACAHAGLQE 327
Query: 281 DGLQYFDIMKKIYRVSPQIEHHGCI 305
+G + M+ Y + P+ EH+ C+
Sbjct: 328 EGQFLLENMEARYGILPKHEHYSCM 352
>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
Length = 706
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 160/287 (55%), Gaps = 23/287 (8%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTN-PSHITFVTLLSGCADFPS--- 95
ST V +T+ IS + +G + + ALE R L P+ +TF ++L CA +
Sbjct: 273 STKFDIVIYTAMISGYVLNG-MNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKL 331
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK 139
V +A+++MYAK GR+DLA ++F + D W +++ F +
Sbjct: 332 GRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQ 391
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
EEA+ FR M + GV+ D +T+ + L+ CAN+ L G +H ++ K F+ ++
Sbjct: 392 DGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFD 451
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF-NLMQKGV 258
+ L+++Y++ G + AR VF M ++ V+WNSII + +G++ ++L F N++++G+
Sbjct: 452 MSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGI 511
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ D ++F L++C HAG +EDG++YF M + Y + Q+EH+ C+
Sbjct: 512 -QPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACM 557
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 132/265 (49%), Gaps = 19/265 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W I + ++G + +A++ F M G P ITF + L A+ S
Sbjct: 178 VVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGY 237
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
+V +++AL+D+Y K +A +F++ D +TA+++G+V ++A
Sbjct: 238 IVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDA 297
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE FR + + P+ LT S+L CA + + +G +H Y+ K + ++ V + +M++
Sbjct: 298 LEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNM 357
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G ++ A +F R+ + + WNSII F+ +G EA+ F M K D V+
Sbjct: 358 YAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTV 417
Query: 267 TGALTACSHAGLIEDGLQYFDIMKK 291
+ AL+AC++ + G + M K
Sbjct: 418 SAALSACANIPALHYGKEIHGFMIK 442
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 12/211 (5%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ V+++L+ +YA G ++ A FD M + C W ++NG+V+ + A++ F+ M
Sbjct: 44 DMFVASSLIKLYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMM 103
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
S +PD +T VL++ + + G +H V + V NTL+ VYS+ +
Sbjct: 104 SSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLG 163
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
AR++F M + LV WN +I G+ NGF+ +A FN M K D ++FT L + +
Sbjct: 164 DARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLA 223
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ +K+I + I HG I
Sbjct: 224 ES----------SSLKQIKEIHGYIVRHGVI 244
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 114/259 (44%), Gaps = 25/259 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS-GCA------------- 91
V W I+ + + G A F M P +TF +LS C+
Sbjct: 77 VLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGL 136
Query: 92 ------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYF 143
DF +V L+ +Y+K ++ A +FD+M D W ++ G+V+ +
Sbjct: 137 VVRSGLDFVP---LVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFM 193
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
++A F M +G++PD +T S L A +L +H Y+ + +V + + L
Sbjct: 194 DDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSAL 253
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y + A ++F K +V + ++I G+ +NG +ALE F + + +
Sbjct: 254 IDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNA 313
Query: 264 VSFTGALTACSHAGLIEDG 282
++F+ L AC+ I+ G
Sbjct: 314 LTFSSILPACAGLAAIKLG 332
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%)
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216
GV PD T V+ C + + +G + + + F ++ V ++L+ +Y+ GCIE A
Sbjct: 5 GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDA 64
Query: 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276
R+ F +M + V WN +I G+ G A++ F M K D V+F L+
Sbjct: 65 RRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSE 124
Query: 277 GLIEDGLQ 284
++E G Q
Sbjct: 125 AMVEYGRQ 132
>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 651
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 128/211 (60%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+ +VST L+ Y+ G +++A+ VFD M D W A+++ F +A + M
Sbjct: 141 DAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHAGLHHQAFSMYSRMA 200
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
GV D TI+++L+ CA+V L +G+ +HR + +V VCN L+D+Y++ G +E
Sbjct: 201 NEGVCVDAYTIVALLSSCAHVSALNMGVMLHRIACDIRCESSVFVCNALIDMYAKCGSLE 260
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A VF+ M KR +++WNS+I+G+ V+G EA+ +F M + + V+F G L CS
Sbjct: 261 NAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAVTFLGLLLGCS 320
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H GL+++G+++F+IM + ++P ++H+GC+
Sbjct: 321 HQGLVKEGVEHFEIMSSQFHLTPNVKHYGCM 351
>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Glycine max]
Length = 696
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 142/322 (44%), Gaps = 60/322 (18%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+V WTS +S H R G E F MR G +LS CAD
Sbjct: 232 NSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIH 291
Query: 96 --------------NNVMVST--------------------------ALLDMYAKFGRMD 115
N ++ T AL+ YA+ G D
Sbjct: 292 GYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCD 351
Query: 116 LATVVFDVMRGCDF------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
A F M D W+A+++GF + E++LE FR MQ++ V + +
Sbjct: 352 EAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCV 411
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
TI SVL+VCA + L +G +H Y + DN+ V N L+++Y + G + VF +
Sbjct: 412 TISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNI 471
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
R L+SWNS+I G+ ++G AL FN M + K D ++F L+ACSHAGL+ G
Sbjct: 472 EGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGR 531
Query: 284 QYFDIMKKIYRVSPQIEHHGCI 305
FD M +R+ P +EH+ C+
Sbjct: 532 NLFDQMVTEFRIEPNVEHYACM 553
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 105/196 (53%), Gaps = 5/196 (2%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDV-----MRGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ L+ +YA+F + A VFD + W +++ V Y + ALE + M+
Sbjct: 65 LAARLIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMR 124
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
G PD T+ V+ C+++ + + +H + + F++++ V N L+ +Y + G +E
Sbjct: 125 KLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRME 184
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
ARQ+F M R++VSWN+++ G+A+N A F M+ + + V++T L++ +
Sbjct: 185 DARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHA 244
Query: 275 HAGLIEDGLQYFDIMK 290
GL ++ L+ F +M+
Sbjct: 245 RCGLYDETLELFKVMR 260
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 125/303 (41%), Gaps = 60/303 (19%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
W S I + G A + MR G P T ++ C+ S
Sbjct: 100 WNSIIRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHAL 159
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVM-------------------------- 124
N++ V L+ MY K GRM+ A +FD M
Sbjct: 160 QMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASR 219
Query: 125 -------RGCD----FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173
G WT+LL+ + ++E LE F+VM+ G+E + VL+VCA
Sbjct: 220 VFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCA 279
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
++ + G +H YV K ++D + V N L+ Y + + A +VF + + LVSWN+
Sbjct: 280 DMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNA 339
Query: 234 IIVGFAVNGFVGEALEYFNLMQK------GVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
+I +A +G EA F M+K + + + +S++ ++ ++ G E L+ F
Sbjct: 340 LISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFR 399
Query: 288 IMK 290
M+
Sbjct: 400 QMQ 402
>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
Length = 1033
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 151/298 (50%), Gaps = 20/298 (6%)
Query: 27 KRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL 86
++P ++ ST D V WT+ I + + G A F RMR +P+ TF ++
Sbjct: 301 RKPDYVMRLFGKMSTPDV-VSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASV 359
Query: 87 LSGCADFP-----------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF 129
+S CA+ + + VS +++ +Y+K G + A++VFD M D
Sbjct: 360 ISACANLAITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDI 419
Query: 130 --WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
W+ +++ + + + +EA Y M G +P+ + SVL+VC ++ L G +H Y
Sbjct: 420 ISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAY 479
Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
V + L+ +YSR G ++ A ++F + +VSW ++I G+A +G+ EA
Sbjct: 480 ALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGYSQEA 539
Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ F + D V+F G LTAC+HAGL++ G Y+ +M Y+++P EH+GCI
Sbjct: 540 ISLFENISSVGLMPDYVTFIGILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCI 597
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 2/191 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
N+V VS+AL+DMY K G+ + VF+ M R WTA++ G V + L YF M
Sbjct: 184 NSVFVSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEM 243
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
S V D T L A L G +H KQ F + V NTL +YS+
Sbjct: 244 WRSKVGYDSHTFAVALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKP 303
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
++ ++F +M +VSW ++I+ + G AL+ F M+K +E +F ++AC
Sbjct: 304 DYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISAC 363
Query: 274 SHAGLIEDGLQ 284
++ + + G Q
Sbjct: 364 ANLAITKWGEQ 374
>gi|147852347|emb|CAN80116.1| hypothetical protein VITISV_032528 [Vitis vinifera]
Length = 505
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 141/287 (49%), Gaps = 19/287 (6%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-- 95
S S W I + EA + MR G +P +TF LL CA +
Sbjct: 77 SGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACAXISAFN 136
Query: 96 ---------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFV 138
NV V ++ Y R+ A +FD M R W A+L+ V
Sbjct: 137 EGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTVVSWNAVLSACV 196
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
++ ++ F M+ SG +PD T++ +L+ C+ + L G W+H V ++ N R
Sbjct: 197 DNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKGMVVNCR 256
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
+ L+D+Y++ G + A VF RM +R + +W+++I+G A +GF EALE F M++
Sbjct: 257 LGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLAQHGFAKEALELFPKMKQSS 316
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ V+F G L ACSHAGL++DG ++F M+ ++ + P + H+G +
Sbjct: 317 ISPNYVTFLGVLCACSHAGLVDDGYRFFHDMEYVHGIEPMMIHYGAM 363
>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
Length = 518
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 153/300 (51%), Gaps = 19/300 (6%)
Query: 25 LKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFV 84
+K R S + K + + W + +S +C+ + F RM+ P T
Sbjct: 69 IKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLA 128
Query: 85 TLLSGCA-----DFP------------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGC 127
+LS C+ DF N++ V++ L+DMY+K G++ +A +F+ M
Sbjct: 129 VILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTER 188
Query: 128 DF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185
D W ++++G +EA ++F+ M+ +G+ P + S++N C+ + ++ G +H
Sbjct: 189 DVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIH 248
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
V K + NV V + L+D+Y++ G ++ AR F M + +V+WN +I G+A NG
Sbjct: 249 AQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGD 308
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+A+E F M K D V+F LT CSH+GL++ + +F+ M+ Y + P EH+ C+
Sbjct: 309 KAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCL 368
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 17/251 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
T V W I+ + G +A + M+ G P+ +T+ LL+ C + +V + A
Sbjct: 22 TIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASC--IKARDVHSARA 79
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
+ D K R + T W LL+G+ + + ++ +E FR MQ V+PD
Sbjct: 80 MFD---KISRPSVTT-----------WNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRT 125
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T+ +L+ C+ + L G +H + +++ V + L+D+YS+ G I AR +F +M
Sbjct: 126 TLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKM 185
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
+R +V WNSII G ++ EA ++F M++ E S+ + +CS I G
Sbjct: 186 TERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGR 245
Query: 284 Q-YFDIMKKIY 293
Q + +MK Y
Sbjct: 246 QIHAQVMKDGY 256
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 212 CIEF--ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
C+E A +VF+ + T+VSWN +I GF G +A+E +LMQ+ F+ +EV+++
Sbjct: 5 CVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNL 64
Query: 270 LTACSHAGLIEDGLQYFDIMKKIYRVS 296
L +C A + FD KI R S
Sbjct: 65 LASCIKARDVHSARAMFD---KISRPS 88
>gi|242093560|ref|XP_002437270.1| hypothetical protein SORBIDRAFT_10g023920 [Sorghum bicolor]
gi|241915493|gb|EER88637.1| hypothetical protein SORBIDRAFT_10g023920 [Sorghum bicolor]
Length = 597
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 148/279 (53%), Gaps = 24/279 (8%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLY-GTNPSHITFVTLLSGCADFPS----------- 95
+TS IS R+ EA L F M + G P TF ++++ +
Sbjct: 215 YTSLISAFVRNDWFNEALLWFRAMVVADGVWPDGCTFGSVMTALGNLKRARQGREAHAQV 274
Query: 96 ------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEAL 147
NV+V ++ LDMYAK G M A VFD M R W ALL G+ + E+ L
Sbjct: 275 VTRGLCGNVIVESSTLDMYAKCGMMVDARKVFDRMKVRNAVSWCALLGGYCQSGMHEKVL 334
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH-RYVPKQDFKDNVRVCNTLMDV 206
FR M + + D+ + ++L C+ + + +G +H R++ + +D V V + L+D+
Sbjct: 335 SLFRQMYME--DDDWYSFGTLLRSCSGLSAVKLGKEIHCRFMRMRGCRD-VIVESALVDL 391
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G +E+A +VF+R R +++WN++I G A NG A+ FN M + K D +SF
Sbjct: 392 YAKCGVVEYAYRVFERSSVRNMITWNAMICGCAQNGHAERAISLFNEMLREGVKPDYISF 451
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
G L ACSH G++E+G YF+ M K+Y + P IEH+ CI
Sbjct: 452 IGVLFACSHTGMVEEGRNYFNSMSKVYGIPPGIEHYNCI 490
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 12/202 (5%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
++ +V +AL+DMY G A F+ MR D +T+L++ FV+ D+F EAL +FR
Sbjct: 178 GDDGVVLSALVDMYGHSGAPGDARRAFEEMRAPDGICYTSLISAFVRNDWFNEALLWFRA 237
Query: 153 MQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211
M ++ GV PD T SV+ N++ G H V + NV V ++ +D+Y++ G
Sbjct: 238 MVVADGVWPDGCTFGSVMTALGNLKRARQGREAHAQVVTRGLCGNVIVESSTLDMYAKCG 297
Query: 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271
+ AR+VF RM R VSW +++ G+ +G + L F M + D SF L
Sbjct: 298 MMVDARKVFDRMKVRNAVSWCALLGGYCQSGMHEKVLSLFRQMY--MEDDDWYSFGTLLR 355
Query: 272 ACSHAGLIEDGLQYFDIMKKIY 293
+CS GL + K+I+
Sbjct: 356 SCS-------GLSAVKLGKEIH 370
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 11/152 (7%)
Query: 131 TALLNGFVKRDYFEEALEYFRVMQISG--------VEPDYLTIISVLNVCANVRTLGIGL 182
+++L F++ AL R M G V P + + CA +R L G
Sbjct: 107 SSVLAAFLRAGLPRRALLQLRTMASGGCGTDDDDDVAPRAHALSASAKACAVLRDLRAGA 166
Query: 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG 242
+H V + + D+ V + L+D+Y G AR+ F+ M + + S+I F N
Sbjct: 167 CVHGTVVVRGYGDDGVVLSALVDMYGHSGAPGDARRAFEEMRAPDGICYTSLISAFVRND 226
Query: 243 FVGEALEYFNLM--QKGVFKTDEVSFTGALTA 272
+ EAL +F M GV+ D +F +TA
Sbjct: 227 WFNEALLWFRAMVVADGVW-PDGCTFGSVMTA 257
>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Vitis vinifera]
Length = 732
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 145/285 (50%), Gaps = 31/285 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-------------- 91
+ WT+ IS ++ C A F RM PS T ++L+ CA
Sbjct: 314 ISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGY 373
Query: 92 --------DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRD 141
D PS N +V+ MYAK G ++ + VFD M D W A+++G +
Sbjct: 374 ILRQRIKLDIPSQNSLVT-----MYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNG 428
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
+ +AL F M+ + PD +T++S+L CA++ L G W+H +V K + +
Sbjct: 429 HLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDT 488
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLMQKGVFK 260
L+D+YS+ G + A++ F RM ++ LVSW+SII G+ +G AL Y + + G+ +
Sbjct: 489 ALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGI-Q 547
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ V + L+ACSH GL++ GL +F M K + + P++EH CI
Sbjct: 548 PNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACI 592
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 118/248 (47%), Gaps = 16/248 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WT+ I + R+G A + MR G PS +T + LLSG +
Sbjct: 115 VPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQ 174
Query: 95 ---SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEY 149
++V ++ ++L++Y K GR++ A +F++M D W +L++G+ + E L+
Sbjct: 175 YGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQL 234
Query: 150 FRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
M+ G+EPD T S+++ A LG+G +H ++ + + + + +L+ +Y +
Sbjct: 235 LIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLK 294
Query: 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269
G + A ++F+ M + ++SW ++I G N A+ F M K +
Sbjct: 295 CGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASV 354
Query: 270 LTACSHAG 277
L AC+ G
Sbjct: 355 LAACAELG 362
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 121/250 (48%), Gaps = 22/250 (8%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
T + + I+R +G + L ++ M T P TF +L+ C
Sbjct: 12 ATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFH 71
Query: 92 -----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
D S++ ++T+L++ Y+KFG A VFD M R WT ++ + + +
Sbjct: 72 QRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHD 131
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
A + +M+ G++P +T++ +L+ + L +H V + F +V + N+++
Sbjct: 132 VAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDVALANSML 188
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+VY + G +E A+ +F+ M R ++SWNS++ G+A G + E L+ M+ + D+
Sbjct: 189 NVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQ 248
Query: 265 SFTGALTACS 274
+F ++A +
Sbjct: 249 TFGSLVSAAA 258
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 8/161 (4%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
+ A++N F + L + M + PD T S++ C ++ GL H+ V
Sbjct: 16 YNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVI 75
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
+ + + +L++ YS+FG + AR+VF M R +V W ++I + G A
Sbjct: 76 VDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFS 135
Query: 250 YFNLMQKGVFKTDEVSFTGALTA--------CSHAGLIEDG 282
+N+M++ + V+ G L+ C HA +I+ G
Sbjct: 136 MYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYG 176
>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Brachypodium distachyon]
Length = 1054
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 143/281 (50%), Gaps = 22/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
V W S + S ++E F+ M G P+ +TFV LLS +
Sbjct: 543 VSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHA 602
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRG---CDFWTALLNGFVKRDYFE 144
+ V AL+ YAK G MD +F M G W ++++G++ + +
Sbjct: 603 VVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQ 662
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
E ++ +M S D T VLN CA+V L G+ MH + + + +V V + L+
Sbjct: 663 ETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALL 722
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+YS+ G I++A +VF M ++ SWNS+I G+A +G +ALE F MQ+ D V
Sbjct: 723 DMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHV 782
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F L+ACSHAGL++ GL YF++M+ + + P IEH+ C+
Sbjct: 783 TFVSVLSACSHAGLVDRGLDYFEMMED-HGILPHIEHYSCV 822
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 25/235 (10%)
Query: 82 TFVTLLSGCADF--PSNNVM--------------------VSTALLDMYAKFGRMDLATV 119
TFV LLS A+F P + +M +S L++MYAK G +D A+
Sbjct: 372 TFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASR 431
Query: 120 VFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
VF ++ D W +++ + + E A+ + +M+ + P IS L+ CA++R
Sbjct: 432 VFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRL 491
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSII-V 236
L G +H K + V N L+ +Y G + ++F M + +VSWNSI+ V
Sbjct: 492 LTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGV 551
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
+ + E++E F+ M + ++V+F L+A S ++E G Q ++ K
Sbjct: 552 MVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLK 606
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 13/193 (6%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
++++ +S L+++YAK R+ A VFD M R WT L++G+V +EA F+
Sbjct: 88 THDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKA 147
Query: 153 MQISGVE---PDYLTIISVLNVC--ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
M G E P T SVL C A L + +H V K + N VCN L+ +Y
Sbjct: 148 MLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMY 207
Query: 208 SR--FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG----VFKT 261
G A+QVF R L++WN+++ +A G+V F M +
Sbjct: 208 GNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRP 267
Query: 262 DEVSFTGALTACS 274
+E +F +TA S
Sbjct: 268 NEHTFGSLITATS 280
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 20/224 (8%)
Query: 34 QTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF 93
Q +S S V W S IS + +G + E M TF +L+ CA
Sbjct: 634 QLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASV 693
Query: 94 PS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM-RGCDF-WTALL 134
+ ++V+V +ALLDMY+K GR+D A+ VF+ M + +F W +++
Sbjct: 694 AALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMI 753
Query: 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK 194
+G+ + E+ALE F MQ +G PD++T +SVL+ C++ + GL +
Sbjct: 754 SGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMMEDHGIL 813
Query: 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVG 237
++ + ++D+ R G + ++ RM K + W +++V
Sbjct: 814 PHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVA 857
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 8/197 (4%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWT--ALLNGFVKRDYFEEALEYFRV 152
S+++ V +AL+ +A+ G +D A +F ++ + T L+ G VK+ EEA+ F
Sbjct: 302 SSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMG 361
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLW----MHRYVPKQDFKD-NVRVCNTLMDVY 207
+ S V + T + +L+ A GL +H ++ + D + + N L+++Y
Sbjct: 362 TRDSFV-VNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMY 420
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
++ G I+ A +VF+ + R VSWN+II NGF A+ + +M++G +
Sbjct: 421 AKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAI 480
Query: 268 GALTACSHAGLIEDGLQ 284
L++C+ L+ G Q
Sbjct: 481 SGLSSCASLRLLTAGQQ 497
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H + K+ ++ + N L+++Y++ + ARQVF M +R VSW ++ G+ ++G
Sbjct: 78 LHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGI 137
Query: 244 VGEALEYFNLM--QKGVF-KTDEVSFTGALTACSHAG 277
EA F M + F + +F L AC AG
Sbjct: 138 TDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAG 174
>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 153/291 (52%), Gaps = 19/291 (6%)
Query: 34 QTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF 93
Q N +S+ TV T+ IS + +G EA F + P+ +TF ++ A
Sbjct: 315 QKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGL 374
Query: 94 PSNNV-----------------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALL 134
+ N+ V +A+LDMYAK GR+DLA VF+ + D W +++
Sbjct: 375 AALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMI 434
Query: 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK 194
+ EA+ FR M + G D ++I L+ CAN+ L G +H + K +
Sbjct: 435 TSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLR 494
Query: 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
++ ++L+D+Y++ G + F+R+VF RM ++ VSWNSII + +G + E L F+ M
Sbjct: 495 SDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEM 554
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ + D V+F G ++AC HAG +++G++Y+ +M + Y + ++EH+ C+
Sbjct: 555 LRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACV 605
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 19/248 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ T W I G A L + +M G +P TF ++ C S
Sbjct: 20 LGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKI 79
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDY 142
+V V ++L+ +YA+ G + A +FD + D W +LNG+VK
Sbjct: 80 VHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGD 139
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
A++ F M+ S ++P+ +T VL+VCA+ L +G +H + + V NT
Sbjct: 140 SGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANT 199
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+ +YS+ C++ AR++F + + LVSWN II G+ NG +GEA F M K D
Sbjct: 200 LLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPD 259
Query: 263 EVSFTGAL 270
++F L
Sbjct: 260 SITFASFL 267
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 92/184 (50%), Gaps = 2/184 (1%)
Query: 107 MYAKFGRM-DLATVVFDVMRGC-DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
MY + G + D + + + GC W ++ GF F AL ++ M +GV PD T
Sbjct: 1 MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
V+ C ++++ +G +H V K++V V ++L+ +Y+ G + A+ +F +
Sbjct: 61 FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
++ V WN ++ G+ NG G A++ F M+ K + V+F L+ C+ +++ G Q
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180
Query: 285 YFDI 288
I
Sbjct: 181 LHGI 184
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 19/247 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-----DFPSN--- 96
+V W ++ + ++G A F MR P+ +TF +LS CA D +
Sbjct: 124 SVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHG 183
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ V+ LL MY+K + A +FD + D W +++G+V+ E
Sbjct: 184 IAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGE 243
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A FR M +G++PD +T S L + +L +H Y+ + +V + + L+D
Sbjct: 244 AEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALID 303
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y + +E A++ + V ++I G+ +NG EALE F + + K V+
Sbjct: 304 IYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVT 363
Query: 266 FTGALTA 272
F+ A
Sbjct: 364 FSSIFPA 370
>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
Length = 903
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 145/289 (50%), Gaps = 31/289 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
V W + I+ + G + A F RM+L G P T++ LL A P
Sbjct: 388 AVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGR 447
Query: 95 -----------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGC-----DF--WTALLNG 136
++ + TA++ MYA G +D A F RG D W A+++
Sbjct: 448 KLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQ--RGAMEDRHDVVSWNAIISS 505
Query: 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
+ + + AL +FR M + GV P+ +T ++VL+ CA L G +H ++ + N
Sbjct: 506 LSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESN 565
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
+ V L +Y R G +E AR++F+++ +R +V +N++I ++ NG GEAL+ F MQ
Sbjct: 566 LFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQ 625
Query: 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304
+ + DE SF L+ACSH GL ++G + F M++ Y ++P +H+ C
Sbjct: 626 QEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYAC 674
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
V W ++I+ + +SG L ALE F RM+L G P+ IT V L+ CA
Sbjct: 194 VSWNAAIAANAQSG-DLGIALELFQRMQLEGVRPARITLVIALTVCATIRQAQAIHFIVR 252
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALE 148
++VSTAL YA+ G + A VFD R W A+L + + + EA
Sbjct: 253 ESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAAL 312
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M G+ P +T+++ C+++R G +H ++ ++ + N L+D+Y+
Sbjct: 313 LFARMLHEGISPSKVTLVNASTGCSSLR---FGRMIHGCALEKGLDRDIVLGNALLDMYT 369
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
R G E AR +F+R+ VSWN++I G + G + A+E F MQ
Sbjct: 370 RCGSPEEARHLFKRI-PCNAVSWNTMIAGSSQKGQMKRAVELFQRMQ 415
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 115/272 (42%), Gaps = 29/272 (10%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--- 94
S+ + WT+ I+ + G A F RM+ G +TF+ +L CA
Sbjct: 86 SRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLS 145
Query: 95 --------------SNNVMVSTALLDMYAKFGRMDLATVVFDVM-RGCDFWTALLNGFVK 139
+++ LL +Y G + A ++F+ M R W A + +
Sbjct: 146 QGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKMERDLVSWNAAIAANAQ 205
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
ALE F+ MQ+ GV P +T++ L VCA +R +H V + + + V
Sbjct: 206 SGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQAQA---IHFIVRESGLEQTLVV 262
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
L Y+R G + A++VF R +R +VSWN+++ +A +G + EA F M
Sbjct: 263 STALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGI 322
Query: 260 KTDEVSFTGALTACS--------HAGLIEDGL 283
+V+ A T CS H +E GL
Sbjct: 323 SPSKVTLVNASTGCSSLRFGRMIHGCALEKGL 354
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 3/173 (1%)
Query: 104 LLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
LL +Y K + VF + R WT ++ + + + A+ F MQ GV D
Sbjct: 68 LLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCD 127
Query: 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
+T ++VL CA + L G +H ++ + K + N L+ +Y GC+ A +F+
Sbjct: 128 AVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFE 187
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
+M +R LVSWN+ I A +G +G ALE F MQ + ++ ALT C+
Sbjct: 188 KM-ERDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCA 239
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 13/139 (9%)
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
++ +L + R L G +H + ++ + N L+ +Y + + +VF R+
Sbjct: 32 LVRLLRAAGDDRLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSRLE 89
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS---------- 274
R SW +II + +G A+ F+ MQ+ + D V+F L AC+
Sbjct: 90 VRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRS 149
Query: 275 -HAGLIEDGLQYFDIMKKI 292
HA ++E GL+ ++ +
Sbjct: 150 IHAWIVESGLKGKSVLANL 168
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 149/312 (47%), Gaps = 50/312 (16%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-----DFPS--- 95
V W S I+ + ++G EA F MR G T V+LL C+ +F
Sbjct: 175 NVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVH 234
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKR---- 140
+++++ AL+DMY K G + +A FD+M + WT++L KR
Sbjct: 235 SHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASID 294
Query: 141 ---DYFE------------------------EALEYFRVMQISGVEPDYLTIISVLNVCA 173
D+FE EAL+ + M++ G+ PD T+ +VL+ C
Sbjct: 295 AARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACG 354
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
+ L G +H + V + N+L+D+Y+R G ++ A +F M + ++SWN+
Sbjct: 355 QLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNA 414
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
II A++G +AL +F M F DE++F L+AC+H GL+E G YF M+ +Y
Sbjct: 415 IIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVY 474
Query: 294 RVSPQIEHHGCI 305
V P +EH+ C+
Sbjct: 475 NVKPGVEHYACM 486
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 118/293 (40%), Gaps = 50/293 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
+ S I +C S C EA M G P+ T LL CA +
Sbjct: 78 YNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVV 137
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
V V ALL YA G + + FD M R W +++NG+ + EA
Sbjct: 138 KLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACS 197
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M+ G+ D T++S+L C+ L G +H ++ + + ++ + N L+D+Y
Sbjct: 198 LFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYG 257
Query: 209 RFG-------------------------------CIEFARQVFQRMHKRTLVSWNSIIVG 237
+ G I+ AR F+++ +++++SWN++I
Sbjct: 258 KCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISC 317
Query: 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
+ G EAL+ +N M+ DE + L+AC G + G D ++
Sbjct: 318 YVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIR 370
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 21/222 (9%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
+ + W + IS + + G EA + RM+L G P T +LS C
Sbjct: 307 SIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIH 366
Query: 92 -----DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+F + V + +LLDMYA+ G++D A +F M + W A++ +
Sbjct: 367 DCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQ 426
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNVRVCNTL 203
+AL +FR M PD +T +++L+ C + L G + + + + K V +
Sbjct: 427 DALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACM 486
Query: 204 MDVYSRFGCIEFARQVFQRMHKRT-LVSWNSIIVGFAVNGFV 244
+D+ R G + A + + M R +V W +++ ++G +
Sbjct: 487 VDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHI 528
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 146/292 (50%), Gaps = 52/292 (17%)
Query: 66 LEFTRMRLYGTNPSHITFVTLLSGCAD----FP-------------SNNVMVSTALLDMY 108
L + +M G +P+ +F L CA +P ++++ TALLDMY
Sbjct: 68 LLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMY 127
Query: 109 AKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQI----------- 155
AK G + A +FD M R W +L+ G+ + + E ALE F M +
Sbjct: 128 AKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALIS 187
Query: 156 ---------------------SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK 194
G +P+ ++I SVL C+ + L IG + Y F
Sbjct: 188 GYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFF 247
Query: 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
N V N ++++++R G IE A+QVF + KR L SWN++I+G AV+G +AL+ ++
Sbjct: 248 KNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQ 307
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
M + D+V+F G L AC+H G++ +G Q F+ M+ ++V+P++EH+GC+
Sbjct: 308 MLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCL 359
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 58/268 (21%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMR-LYGTNPSHITFVTLLSGCADFPS- 95
+K + + WT+ IS + ++G +A F + GT P+ ++ ++L C+ +
Sbjct: 172 NKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGAL 231
Query: 96 ----------------NNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNG 136
N VS A+L+++A+ G ++ A VFD + R W ++ G
Sbjct: 232 DIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMG 291
Query: 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
+AL+ + M I + PD +T + +L C
Sbjct: 292 LAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLAC------------------------ 327
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN--GFVGEALEYFNLM 254
+ G + RQ+F+ M + V+ G V+ G GE E +NL+
Sbjct: 328 -----------THGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLI 376
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDG 282
Q D V + L ACS G +E G
Sbjct: 377 QNMPMAPDSVIWGTLLGACSFHGNVELG 404
>gi|293333352|ref|NP_001168668.1| uncharacterized protein LOC100382456 [Zea mays]
gi|223950067|gb|ACN29117.1| unknown [Zea mays]
Length = 602
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 149/281 (53%), Gaps = 19/281 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVM---- 99
+ V W++ S + ++G +E F+ MR + L++ F +N V
Sbjct: 218 SVVTWSAMASAYLQTGDWMEVFALFSSMRETEQPMDSVVLANLITAAMLFGNNLVAKGVH 277
Query: 100 -------------VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
++ +L+++Y+K G + A VFD + + WT++LNG+V+ Y +
Sbjct: 278 ALAIKVGFDRQEDLAASLVNLYSKCGNLLAAREVFDSLQWKSVIMWTSMLNGYVECGYPD 337
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL F M + VEP+ T+++VL+ AN+ + + + +V + + +++VC L+
Sbjct: 338 EALATFDAMLCAKVEPNKATVLAVLSAGANLGSANVAQKVEEHVKAMELQSDLQVCTRLI 397
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y + G I+ AR++F + R L W+++I G A NG EA+ FN MQ + D +
Sbjct: 398 DMYCKCGSIQRARKIFDSVPNRDLAIWSAMINGHACNGEGSEAVVLFNEMQSKGVRPDAI 457
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
FT LTACSH+G +++GL+ F M + + P +EH+ C+
Sbjct: 458 VFTHILTACSHSGSVDEGLRCFHSMTAEHGIEPSVEHYMCM 498
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 118/254 (46%), Gaps = 20/254 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD-----FPSNNV 98
T V W IS + RS + EA F MR PS T V LLSGCAD +P +V
Sbjct: 116 TLVAWNCMISAYGRSSQVEEAVGVFNAMRRAEVRPSGSTVVGLLSGCADSVSARYPGVSV 175
Query: 99 -------------MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYF 143
+VS ++L M + G++D A ++FD + + W+A+ + +++ +
Sbjct: 176 YGLTIKSGLDADLLVSNSVLTMLVRGGQLDSARLLFDRVENKSVVTWSAMASAYLQTGDW 235
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
E F M+ + D + + +++ + +H K F + +L
Sbjct: 236 MEVFALFSSMRETEQPMDSVVLANLITAAMLFGNNLVAKGVHALAIKVGFDRQEDLAASL 295
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+++YS+ G + AR+VF + ++++ W S++ G+ G+ EAL F+ M + ++
Sbjct: 296 VNLYSKCGNLLAAREVFDSLQWKSVIMWTSMLNGYVECGYPDEALATFDAMLCAKVEPNK 355
Query: 264 VSFTGALTACSHAG 277
+ L+A ++ G
Sbjct: 356 ATVLAVLSAGANLG 369
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 8/207 (3%)
Query: 71 MRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD----VMRG 126
+RL G + + + LSG A S + V T+L+DMYAK GR+ A +FD R
Sbjct: 60 LRLPGLGRA-VHALAFLSGAA--VSRDAFVRTSLVDMYAKCGRLPDAHRLFDETPCSSRT 116
Query: 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN-VRTLGIGLWMH 185
W +++ + + EEA+ F M+ + V P T++ +L+ CA+ V G+ ++
Sbjct: 117 LVAWNCMISAYGRSSQVEEAVGVFNAMRRAEVRPSGSTVVGLLSGCADSVSARYPGVSVY 176
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
K ++ V N+++ + R G ++ AR +F R+ +++V+W+++ + G
Sbjct: 177 GLTIKSGLDADLLVSNSVLTMLVRGGQLDSARLLFDRVENKSVVTWSAMASAYLQTGDWM 236
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTA 272
E F+ M++ D V +TA
Sbjct: 237 EVFALFSSMRETEQPMDSVVLANLITA 263
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR--YVPKQDFKDNVRVCNTLMDV 206
Y + +G+ D T S+ CA +R G+G +H ++ + V +L+D+
Sbjct: 34 YAGPLLAAGLRGDASTFPSLAKSCAALRLPGLGRAVHALAFLSGAAVSRDAFVRTSLVDM 93
Query: 207 YSRFGCIEFARQVFQRM--HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
Y++ G + A ++F RTLV+WN +I + + V EA+ FN M++ +
Sbjct: 94 YAKCGRLPDAHRLFDETPCSSRTLVAWNCMISAYGRSSQVEEAVGVFNAMRRAEVRPSGS 153
Query: 265 SFTGALTACS 274
+ G L+ C+
Sbjct: 154 TVVGLLSGCA 163
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 130/212 (61%), Gaps = 3/212 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF-RVM 153
NV++ ++D YA+ G + A +FD M R W +++G+ + +++EA+E F R+M
Sbjct: 198 NVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMM 257
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q+ V P+ +T++SVL + + L +G W+H Y K + + + + L+D+Y++ G I
Sbjct: 258 QMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSI 317
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
E A QVF+R+ + +++WN++I G A++G + Y + M+K +V++ L+AC
Sbjct: 318 EKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSAC 377
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SHAGL+++G +F+ M + P+IEH+GC+
Sbjct: 378 SHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCM 409
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 54/237 (22%)
Query: 100 VSTALLDMYA--KFGRMDLATVVFDVM--RGCDFWTALLNGFVK-RDYFEEALEYF-RVM 153
++T +L + A F + A VFD + R C W ++ + +D +AL F +++
Sbjct: 49 IATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQML 108
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD------------------ 195
+ VEP+ T SVL CA + L G +H + K D
Sbjct: 109 SEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSM 168
Query: 196 -----------------------------NVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
NV +CN ++D Y+R G ++ AR++F RM +R
Sbjct: 169 EDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQR 228
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
++VSWN +I G+A NGF EA+E F+ +MQ G + V+ L A S G++E G
Sbjct: 229 SVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELG 285
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 138/260 (53%), Gaps = 14/260 (5%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V W S ++ R+G +A M L G P T +LL + +NV + +
Sbjct: 1193 VSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV---SFVK 1249
Query: 106 DMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
+M+ K L + W ++ ++ EA++ F M+ V+PD ++I
Sbjct: 1250 EMFMKLANKSLVS-----------WNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISI 1298
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
SVL C ++ L +G +H YV ++ + N+ + N L+D+Y++ GC+E+AR+VF +M
Sbjct: 1299 ASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKF 1358
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
R +VSW S+I + +NG +A+ F+ MQ D ++F L+ACSHAGL+++G Y
Sbjct: 1359 RDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYY 1418
Query: 286 FDIMKKIYRVSPQIEHHGCI 305
F +M + ++ P+IEH C+
Sbjct: 1419 FKLMTEECKIVPRIEHFVCM 1438
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 2/185 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+N + L+ YA G +FD + + F+ ++ +V + +AL F+ M
Sbjct: 1058 SNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNM 1117
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
G++PD+ T VL + L +G+ +H V + NV V N L+ +Y + GC+
Sbjct: 1118 AGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCL 1177
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A +V M R +VSWNS++ G A NG +ALE M+ K D + L A
Sbjct: 1178 VEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAV 1237
Query: 274 SHAGL 278
++ L
Sbjct: 1238 TNTCL 1242
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 119/203 (58%), Gaps = 2/203 (0%)
Query: 102 TALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
T ++ YA+ G +D++ +FD M D W A++ G V+ ++AL F+ MQ S +
Sbjct: 327 TTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTK 386
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD +T+I L+ C+ + L +G+W+HRY+ K NV + +L+D+Y++ G I A V
Sbjct: 387 PDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSV 446
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F + R +++ +II G A++G A+ YFN M DE++F G L+AC H G+I
Sbjct: 447 FHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMI 506
Query: 280 EDGLQYFDIMKKIYRVSPQIEHH 302
+ G YF MK + ++PQ++H+
Sbjct: 507 QTGRDYFSQMKSRFNLNPQLKHY 529
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 53/289 (18%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYG---TNPSHITFVTLLSGCADFPSNNV------ 98
W +I S E+ L + +M +G + P H T+ L CAD +++
Sbjct: 121 WNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILG 180
Query: 99 -----------MVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEE 145
V A + M+A G M+ A VFD +R W L+NG+ K E+
Sbjct: 181 HVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEK 240
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ +++M+ GV+PD +T+I +++ C+ + L G + YV + + + + N LMD
Sbjct: 241 AIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMD 300
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAV----------------------NGF 243
++S+ G I AR++F + KRT+VSW ++I G+A N
Sbjct: 301 MFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAM 360
Query: 244 VG---------EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
+G +AL F MQ K DE++ L+ACS G ++ G+
Sbjct: 361 IGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGI 409
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGV---EPDYLTIISVLNVCANVRTLGIGLWMHR 186
W + GF + + +E+ ++ M G PD+ T + VCA++R +G +
Sbjct: 121 WNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILG 180
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
+V K + V N + +++ G +E AR+VF R LVSWN +I G+ G +
Sbjct: 181 HVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEK 240
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
A+ + LM+ K D+V+ G +++CS G + G ++++ +K+
Sbjct: 241 AIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKE 285
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 96/220 (43%), Gaps = 21/220 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + I ++ +A F M+ T P IT + LS C+
Sbjct: 355 VLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRY 414
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
S NV + T+L+DMYAK G + A VF + R +TA++ G A
Sbjct: 415 IEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTA 474
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMD 205
+ YF M +G+ PD +T I +L+ C + + G + + + + ++ + ++D
Sbjct: 475 ISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVD 534
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVS-WNSIIVGFAVNGFV 244
+ R G +E A ++ + M + W +++ G ++G V
Sbjct: 535 LLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNV 574
>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
Length = 803
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 153/300 (51%), Gaps = 19/300 (6%)
Query: 25 LKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFV 84
+K R S + K + + W + +S +C+ + F RM+ P T
Sbjct: 362 IKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLA 421
Query: 85 TLLSGCA-----DFPS------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGC 127
+LS C+ DF N++ V++ L+DMY+K G++ +A +F+ M
Sbjct: 422 VILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTER 481
Query: 128 DF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185
D W ++++G +EA ++F+ M+ +G+ P + S++N C+ + ++ G +H
Sbjct: 482 DVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIH 541
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
V K + NV V + L+D+Y++ G ++ AR F M + +V+WN +I G+A NG
Sbjct: 542 AQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGD 601
Query: 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+A+E F M K D V+F LT CSH+GL++ + +F+ M+ Y + P EH+ C+
Sbjct: 602 KAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCL 661
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 133/282 (47%), Gaps = 35/282 (12%)
Query: 45 TVQWTSSISRHCRS-GCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
V W + IS RS G EA + RMR G P+H T ++LS C +
Sbjct: 105 AVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRRCH 164
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFE 144
N V ALL MY K G + A +F M + +TA++ G + +
Sbjct: 165 GVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSID 224
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANV--------RTLGIGLWMHRYVPKQDFKDN 196
+AL F M SGV D +++ SVL CA R +G +H V ++ F +
Sbjct: 225 DALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSD 284
Query: 197 VRVCNTLMDVYSRFGCIEF--ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
V N+L+D+Y++ C+E A +VF+ + T+VSWN +I GF G +A+E +LM
Sbjct: 285 QHVGNSLIDMYTK--CVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLM 342
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
Q+ F+ +EV+++ L +C A + FD KI R S
Sbjct: 343 QEAGFEPNEVTYSNLLASCIKARDVHSARAMFD---KISRPS 381
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 17/251 (6%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103
T V W I+ + G +A + M+ G P+ +T+ LL+ C + +V + A
Sbjct: 315 TIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASC--IKARDVHSARA 372
Query: 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
+ D K R + T W LL+G+ + + ++ +E FR MQ V+PD
Sbjct: 373 MFD---KISRPSVTT-----------WNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRT 418
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T+ +L+ C+ + L G +H + +++ V + L+D+YS+ G I AR +F +M
Sbjct: 419 TLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKM 478
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
+R +V WNSII G ++ EA ++F M++ E S+ + +CS I G
Sbjct: 479 TERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGR 538
Query: 284 Q-YFDIMKKIY 293
Q + +MK Y
Sbjct: 539 QIHAQVMKDGY 549
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN-GFVGEALEYFNLMQKGVF 259
N + R G ++ AR + M +R VSWN++I A + G GEA+E + M+
Sbjct: 78 NAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGL 137
Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
+ L+AC + DG + + K+
Sbjct: 138 LPTHFTLASVLSACGGLAALGDGRRCHGVAVKV 170
>gi|255571614|ref|XP_002526753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533942|gb|EEF35667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 818
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 143/266 (53%), Gaps = 20/266 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN--------- 96
V WT+ IS + R G E F RM P+ T T+L+ C D +
Sbjct: 542 VSWTAMISGYSRRGFAFETLHLFVRMLRSDIEPNEFTLATVLTSCTDASGSELGRQIHSL 601
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++ V ++LLDMYAK GR+ A +VF+ + D TA+++G+ + EEA
Sbjct: 602 IIKCNYDSHIFVGSSLLDMYAKAGRILEARMVFESLPERDVVSCTAIISGYAQLGLDEEA 661
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
LE FR ++ G+ + +T SVL + + L G +H +V +++ V + N+++D+
Sbjct: 662 LELFRRLEREGLSSNCVTYASVLTSLSGLAALDHGKQVHSHVLRRELPFYVVLQNSMIDM 721
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVS 265
YS+ G + +AR++F M +RT++SWN+++VG+ +G E +E F LM+ + K D V+
Sbjct: 722 YSKCGSLNYARRIFDSMPERTVISWNAMLVGYGKHGMGREVVELFKLMRTENKVKPDSVT 781
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKK 291
L+ CSH G + GL+ FD M K
Sbjct: 782 ILAVLSGCSHGGFEDKGLEIFDEMLK 807
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 103/190 (54%), Gaps = 2/190 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V + T L+ Y K + A VFD M R WTA+++G+ +R + E L F M
Sbjct: 509 SVYLRTRLIVFYTKCDLLMDARHVFDEMSERNVVSWTAMISGYSRRGFAFETLHLFVRML 568
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
S +EP+ T+ +VL C + +G +H + K ++ ++ V ++L+D+Y++ G I
Sbjct: 569 RSDIEPNEFTLATVLTSCTDASGSELGRQIHSLIIKCNYDSHIFVGSSLLDMYAKAGRIL 628
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
AR VF+ + +R +VS +II G+A G EALE F +++ ++ V++ LT+ S
Sbjct: 629 EARMVFESLPERDVVSCTAIISGYAQLGLDEEALELFRRLEREGLSSNCVTYASVLTSLS 688
Query: 275 HAGLIEDGLQ 284
++ G Q
Sbjct: 689 GLAALDHGKQ 698
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 3/158 (1%)
Query: 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193
LN + +EAL F M G+E + ++LN C N + + G +H ++ K +
Sbjct: 450 LNSLCSQGRLQEAL--FE-MACQGLEMKFDGYNTLLNECVNNKAIREGQRVHAHIIKTYY 506
Query: 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253
+V + L+ Y++ + AR VF M +R +VSW ++I G++ GF E L F
Sbjct: 507 LPSVYLRTRLIVFYTKCDLLMDARHVFDEMSERNVVSWTAMISGYSRRGFAFETLHLFVR 566
Query: 254 MQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291
M + + +E + LT+C+ A E G Q ++ K
Sbjct: 567 MLRSDIEPNEFTLATVLTSCTDASGSELGRQIHSLIIK 604
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 125/212 (58%), Gaps = 3/212 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+V+ +++ Y + R +LA VFD + R WT+++ G+ + D F+EA+E FR MQ
Sbjct: 77 DVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQ 136
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
I G D TI VL+ C + L G W+H Y + + ++ N L+ +YS+ G I+
Sbjct: 137 IGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQ 196
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGALTAC 273
A ++F + + + SW+++I G A+NG +AL F+ M+ + +E++F G L AC
Sbjct: 197 KALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCAC 256
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+H G ++ GL YF+ M +IY ++P IEH+GC+
Sbjct: 257 NHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCM 288
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 62/160 (38%), Gaps = 33/160 (20%)
Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
+G PD + VL CA + L G +H K +V V N L+ +S G +E
Sbjct: 4 NGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEA 63
Query: 216 AR---------------------------------QVFQRMHKRTLVSWNSIIVGFAVNG 242
AR +VF R+ R V W S+I G+A +
Sbjct: 64 ARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSD 123
Query: 243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
EA+E F MQ G F D + L+AC H G + G
Sbjct: 124 LFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQG 163
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 153/281 (54%), Gaps = 23/281 (8%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH--ITFVTLLSG---CADF--- 93
+ W + IS + G + EA RL+ P +++ ++SG C D
Sbjct: 132 LKDVASWNTMISALAQVGLMGEA------RRLFSAMPEKNCVSWSAMVSGYVACGDLDAA 185
Query: 94 -------PSNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFE 144
P +V+ TA++ Y KFGR++LA +F MR W A++ G+V+ E
Sbjct: 186 VECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAE 245
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+ L FR M +GV+P+ L++ SVL C+N+ L +G +H+ V K + +L+
Sbjct: 246 DGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLV 305
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+YS+ G ++ A ++F ++ ++ +V WN++I G+A +G +AL F+ M+K K D +
Sbjct: 306 SMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWI 365
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F L AC+HAGL++ G+QYF+ M++ + + + EH+ C+
Sbjct: 366 TFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACM 406
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 11/163 (6%)
Query: 92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKR-DYFEEALE 148
+F +NNV+ S L+ Y + G +D A VF+ M + W ++L F K+ +FE A +
Sbjct: 35 EFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQ 94
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F + P T+ + + + LG+ + KD V NT++ +
Sbjct: 95 LFEKI------PQPNTVSYNIMLACHWHHLGVHD-ARGFFDSMPLKD-VASWNTMISALA 146
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
+ G + AR++F M ++ VSW++++ G+ G + A+E F
Sbjct: 147 QVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECF 189
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
+NV N L+ Y R G I+ A +VF+ M ++ V+WNSI+ FA EY +
Sbjct: 39 NNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKK---PGHFEYARQL 95
Query: 255 QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
+ + + + VS+ L H + D +FD M
Sbjct: 96 FEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSM 130
>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Brachypodium distachyon]
Length = 796
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 136/279 (48%), Gaps = 19/279 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTL-----------LSGCADFP 94
V + + IS + +G + + F + G PS T V L L+GC
Sbjct: 288 VTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAH 347
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
N VSTAL +Y +F MD A FD M + + W A+++G+ + E A
Sbjct: 348 VVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMA 407
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
+ F+ MQ V P+ LTI S L+ CA + L +G W+H+ + + + NV V L+D+
Sbjct: 408 VALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDM 467
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G I AR +F M + +VSWN +I G+ ++G EAL+ + M +F
Sbjct: 468 YVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTF 527
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACSH GL+++G F M Y ++P IEH C+
Sbjct: 528 LSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCM 566
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 110/250 (44%), Gaps = 29/250 (11%)
Query: 49 TSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMY 108
+S++ C G I + +R P H V + F ++N V++AL +Y
Sbjct: 120 ATSLASSCSRGGISPPSAASAALR-----PLHALAVA-----SGFAADN-FVASALAKLY 168
Query: 109 AKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTI 165
R + A VFD + D W LL G EALE F M +G V PD T+
Sbjct: 169 FTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSG----SEALEAFVRMAGAGSVRPDSTTL 224
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225
SVL A V +G +H + K + V L+ +Y++ G +E AR +F RM
Sbjct: 225 ASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEG 284
Query: 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG-----------ALTACS 274
LV++N++I G+++NG VG ++E F + + + L C
Sbjct: 285 PDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCL 344
Query: 275 HAGLIEDGLQ 284
HA +++ GL
Sbjct: 345 HAHVVKAGLD 354
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 124/211 (58%), Gaps = 2/211 (0%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
+V+ + L+ + + G ++LA VFD M D WT +++G+ + EALE FR M+
Sbjct: 410 DVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELFREMR 469
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
GV PD + ++ V++ C ++ L G +HRY+ + F V +CN L+D+Y++ GC++
Sbjct: 470 DVGVRPDEVAMVIVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMD 529
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A QVF M +++L++WNS+I A +G +A F LM + D V+F LTA +
Sbjct: 530 LAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIRPDGVTFLALLTAYT 589
Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H G ++DG F+ M++ Y V +EH+GC+
Sbjct: 590 HKGWVDDGYGLFESMQRDYGVEAGVEHYGCM 620
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 35/191 (18%)
Query: 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT----LGIGLWM 184
F+ L+ G+ K ++++ F M+ + V+PD T +L + +R + +
Sbjct: 308 FYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEI 367
Query: 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIV-------- 236
H V K F ++ V N L+ +Y+ G A QVF M +VSW+ ++V
Sbjct: 368 HGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGEL 427
Query: 237 -----------------------GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
G+A EALE F M+ + DEV+ ++AC
Sbjct: 428 ELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVIVISAC 487
Query: 274 SHAGLIEDGLQ 284
+ G +E G +
Sbjct: 488 TSLGDLETGFE 498
>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 151/285 (52%), Gaps = 20/285 (7%)
Query: 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV- 98
S+ DT V T+ IS + +G EA F + P+ +TF ++ A + N+
Sbjct: 322 SSFDTVV-CTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLG 380
Query: 99 ----------------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKR 140
V +A+LDMYAK GR+DLA VF+ + D W +++ +
Sbjct: 381 KELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQN 440
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200
EA+ FR M + G D ++I L+ CAN+ L G +H + K + ++
Sbjct: 441 GRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAE 500
Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
++L+D+Y++ G + F+R+VF RM +R VSWNSII + +G + E L F+ M + +
Sbjct: 501 SSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQ 560
Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D V+F G ++AC HAG +++G++Y+ +M + Y + ++EH+ C+
Sbjct: 561 PDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACV 605
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 19/248 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
+ T W I G A L + +M G +P TF ++ C S
Sbjct: 20 LGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKI 79
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDY 142
+V V ++L+ +YA+ G + A +FD + D W +LNG+VK
Sbjct: 80 VHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGD 139
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
A++ F M+ S ++P+ +T VL+VCA+ L +G +H + + V NT
Sbjct: 140 SGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANT 199
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+ +YS+ C++ AR++F + LVSWN II G+ NG +GEA F M K D
Sbjct: 200 LLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPD 259
Query: 263 EVSFTGAL 270
++F L
Sbjct: 260 SITFASFL 267
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 92/184 (50%), Gaps = 2/184 (1%)
Query: 107 MYAKFGRM-DLATVVFDVMRGC-DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
MY + G + D + + + GC W ++ GF F AL ++ M +GV PD T
Sbjct: 1 MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
V+ C ++++ +G +H V K++V V ++L+ +Y+ G + A+ +F +
Sbjct: 61 FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
++ V WN ++ G+ NG G A++ F M+ K + V+F L+ C+ +++ G Q
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180
Query: 285 YFDI 288
I
Sbjct: 181 LHGI 184
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 19/247 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-----DFPSN--- 96
+V W ++ + ++G A F MR P+ +TF +LS CA D +
Sbjct: 124 SVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHG 183
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ V+ LL MY+K + A +FD D W +++G+V+ E
Sbjct: 184 IAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGE 243
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A FR M +G++PD +T S L + +L +H Y+ + +V + + L+D
Sbjct: 244 AEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALID 303
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y + +E A+++ + V ++I G+ +NG EALE F + + K V+
Sbjct: 304 IYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVT 363
Query: 266 FTGALTA 272
F+ A
Sbjct: 364 FSSIFPA 370
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 91/203 (44%), Gaps = 20/203 (9%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----- 95
T + W S I+ ++G EA F +M + GT ++ LS CA+ P+
Sbjct: 423 TEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGK 482
Query: 96 ------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRD 141
+++ ++L+DMYAK G ++ + VFD M R W ++++ +
Sbjct: 483 EIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHG 542
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL-WMHRYVPKQDFKDNVRVC 200
+E L F M +G++PD++T + +++ C + + G+ + H + +
Sbjct: 543 DLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHY 602
Query: 201 NTLMDVYSRFGCIEFARQVFQRM 223
+ D++ R G ++ A + M
Sbjct: 603 ACVADMFGRAGRLDEAFETINSM 625
>gi|357469567|ref|XP_003605068.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506123|gb|AES87265.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 494
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 133/221 (60%), Gaps = 6/221 (2%)
Query: 91 ADFPSNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALE 148
+ P N + + K+G+++ A VFD V+R WT +++G+ + + +AL
Sbjct: 173 GEMPDRNTVTWNVFISGLIKWGQLEFARSVFDRMVVRSVVSWTLVIDGYTRMNKPLKALA 232
Query: 149 YFRVM-QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDV 206
FR M ++ G+EP+ +T+++V A++ + + +H YV K+ F ++R+ N L+D+
Sbjct: 233 LFRKMIEVDGIEPNEVTLLTVFPAIAHLGNVKMCESVHGYVEKRGFNAVDIRIVNALIDL 292
Query: 207 YSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
Y++ GCIE A +F M +R VSWNS++ G+A G V EA++ F M+K + + V
Sbjct: 293 YAKCGCIESASGLFSEMPDWRRNSVSWNSVMSGYATFGMVREAVDTFEKMEKAGVRPNHV 352
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F L+ACSH+GL+E+GL++F M Y + P I+H+GC+
Sbjct: 353 AFLSILSACSHSGLVEEGLEFFGKMVNDYGLVPDIKHYGCV 393
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%)
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220
D T+ + + CAN+ T G +H V K F+++V V L+ +YS +G + A QVF
Sbjct: 113 DSFTLTFLAHACANLDTTHFGFHLHCIVCKMGFENHVFVQTGLLHMYSNWGFLVDAAQVF 172
Query: 221 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254
M R V+WN I G G + A F+ M
Sbjct: 173 GEMPDRNTVTWNVFISGLIKWGQLEFARSVFDRM 206
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA 91
+V W S +S + G + EA F +M G P+H+ F+++LS C+
Sbjct: 316 SVSWNSVMSGYATFGMVREAVDTFEKMEKAGVRPNHVAFLSILSACS 362
>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Brachypodium distachyon]
Length = 822
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 150/282 (53%), Gaps = 19/282 (6%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD---------- 92
D + + + I + R G + A F++MR PS +TFV+LL +
Sbjct: 380 DDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQI 439
Query: 93 -------FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYF 143
S ++ ++L+D+Y+KF ++ A VF++M D W A++ G + +
Sbjct: 440 HGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQG 499
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
EEA++ F +Q+SG+ P+ T ++++ V + + ++ G H + K + V N L
Sbjct: 500 EEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNAL 559
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
+D+Y++ G I+ R +F+ + ++ WNS+I +A +G EAL F +M + +
Sbjct: 560 IDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNY 619
Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
V+F G L+AC+HAGL+++GL++FD MK Y + P EH+ +
Sbjct: 620 VTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASV 661
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 21/260 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLY--GTNPSHITFVTLLSGCADFPS-------- 95
V W S+IS H + GC +A F + G P+ + L CA +
Sbjct: 78 VSWGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVH 137
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
NV V TAL+++YAK G +D A +VFD + + WTA++ G+ +
Sbjct: 138 GVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGG 197
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
ALE F M + GV PD + S ++ C+ + L G H Y + + + V N L+
Sbjct: 198 VALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALI 257
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y + + AR++F M R LVSW ++I G+ N EA+ F + + ++ D
Sbjct: 258 DLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVF 317
Query: 265 SFTGALTACSHAGLIEDGLQ 284
+ L +C I G Q
Sbjct: 318 ACASILNSCGSLAAIWQGRQ 337
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 122/269 (45%), Gaps = 19/269 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------- 94
+ V WT+ I+ + + G A F +M L G P + +S C+
Sbjct: 177 VKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQ 236
Query: 95 ----------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
+ V AL+D+Y K R+ LA +FD M R WT ++ G+++
Sbjct: 237 THGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSC 296
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
EA+ F + G +PD S+LN C ++ + G +H + K + + + V N+
Sbjct: 297 DAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNS 356
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+Y++ + AR VF+ + + +S+N++I G++ G + A++ F+ M+ K
Sbjct: 357 LIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPS 416
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKK 291
++F L S IE Q ++ K
Sbjct: 417 PLTFVSLLGVSSSQSAIELSKQIHGLIVK 445
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 4/192 (2%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
++ ++ LL Y+K GR+ A +FD M + W + ++ + E+A+ F Q
Sbjct: 45 DLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQ 104
Query: 155 IS--GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
+ G P+ + S L CA R + G +H + NV V L+++Y++ GC
Sbjct: 105 RASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGC 164
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
I+ A VF + + V+W ++I G++ G G ALE F M + D A++A
Sbjct: 165 IDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSA 224
Query: 273 CSHAGLIEDGLQ 284
CS G +E G Q
Sbjct: 225 CSALGFLEGGRQ 236
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 184 MHRYVPKQDFKDNVR-------VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIV 236
+HR +P + V + N L+ YS+ G + AR++F RM + LVSW S I
Sbjct: 26 LHRLLPLAHARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAIS 85
Query: 237 GFAVNGFVGEALEYFNLMQK--GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
A +G +A+ F Q+ G +E AL AC+ + + G Q + +I
Sbjct: 86 MHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRI 143
>gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 586
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 139/255 (54%), Gaps = 8/255 (3%)
Query: 57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDL 116
+SG L ++ + Y ++ SHIT L + NV+ TA+L YA+ G +
Sbjct: 154 KSGFHLYVVVQTALLHSYASSVSHITLARQLFD--EMSERNVVSWTAMLSGYARSGDIFN 211
Query: 117 ATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM-QISGVEPDYLTIISVLNVCA 173
A +F+ M R W A+L + F EA+ FR M + P+ +T++ VL+ CA
Sbjct: 212 AVALFEEMPERDVPSWNAILAACTQNGLFVEAVSLFRRMINDPCIRPNEVTLVCVLSACA 271
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
TL + +H + +++ +V V N+L+D+Y + G +E A VF+ K++L +WNS
Sbjct: 272 QTGTLQLAKGIHAFAYRRNLSSDVFVSNSLVDLYGKCGNLEEASSVFKMSSKKSLTAWNS 331
Query: 234 IIVGFAVNGFVGEALEYFNLMQK---GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
+I FA++G EA+ F M K K D ++F G L AC+H GL+ G YFD+MK
Sbjct: 332 MINCFALHGRSEEAIAVFEDMMKLNSHDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMK 391
Query: 291 KIYRVSPQIEHHGCI 305
K + + P+IEH+GC+
Sbjct: 392 KRFGIEPRIEHYGCL 406
>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
[Vitis vinifera]
Length = 523
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 145/283 (51%), Gaps = 31/283 (10%)
Query: 52 ISRHCRSGCILEAALEFTRMRL------------YGTNPSHITFVTLLS-----GCADFP 94
+S H + CILEA + R YGT PS IT +L+S C D
Sbjct: 17 LSDHQKLNCILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLIT--SLVSTYAHCDCLDLA 74
Query: 95 SN----------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
+++ + ++ K G D A VF M R W +++ G V+ +
Sbjct: 75 HQLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNER 134
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
FEEAL +FR M S VEPD T SV+N CA + + +H + ++ + N + +
Sbjct: 135 FEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSA 194
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
L+D+YS+ G I A++VF + + WNS+I G A++G +A+ F+ M+ D
Sbjct: 195 LIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPD 254
Query: 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
++F G LTACSH GL+E G +YFD+M++ Y + PQ+EH+G +
Sbjct: 255 SITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAM 297
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 37/220 (16%)
Query: 45 TVQWTSSISRHCRSGCI----LEAALEFTRMRL-YGTNPSHITFVTLLSGCADFPSN--- 96
V W S I GC+ E AL F R L P TF ++++GCA S+
Sbjct: 119 VVTWNSMIG-----GCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHA 173
Query: 97 --------------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKR 140
N ++S+AL+D+Y+K GR++ A VF+ ++ D W +++NG
Sbjct: 174 ELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIH 233
Query: 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL----WMHRYVPKQDFKDN 196
+A+ F M++ V PD +T I +L C++ + G M R+ Q ++
Sbjct: 234 GLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEH 293
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRM-HKRTLVSWNSII 235
++D+ R G +E A + + M + +V W +++
Sbjct: 294 Y---GAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALL 330
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 15/145 (10%)
Query: 37 NSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN 96
NS D +V W S I+ G L+A F++M + +P ITF+ +L+ C+
Sbjct: 213 NSIQHDDVSV-WNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACS----- 266
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQIS 156
L++ ++ DL + + + + A+++ + EEA + M +
Sbjct: 267 ----HCGLVEQGRRY--FDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPM- 319
Query: 157 GVEPDYLTIISVLNVCANVRTLGIG 181
EPD + ++L+ C N + +G
Sbjct: 320 --EPDIVIWRALLSACRNFKNPELG 342
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 136/272 (50%), Gaps = 19/272 (6%)
Query: 49 TSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD-------------FPS 95
T+ IS + C++ A F M P+ + + +++ C P
Sbjct: 145 TTLISMYAECACLVFARKVFDEM----IEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPI 200
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVM 153
N+ +L Y K G + LA VF M D W+ ++ GF F +A +FR +
Sbjct: 201 RNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREV 260
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ G+ P+ +++ VL+ CA G +H +V K F + V N L+D YS+ G +
Sbjct: 261 RREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNL 320
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ AR VF M +R+ VSW ++I G A++G+ EA+ FN M++ K D ++F L AC
Sbjct: 321 DMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYAC 380
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SHAGL++ G YF M Y + P IEH+GC+
Sbjct: 381 SHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCM 412
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 30/191 (15%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVE-PDYLTIISVLNVCANVRTLGIGLWMHRYV 188
+ L+ G D AL+ F M+ V PD + +L AN R L GL +H
Sbjct: 73 YNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLA 132
Query: 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG-FAVNGFVGEA 247
++ V TL+ +Y+ C+ FAR+VF M + +V+WN+I+ F G V +A
Sbjct: 133 VGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEG-VKDA 191
Query: 248 LEYF-----------NLMQKGVFKT----------------DEVSFTGALTACSHAGLIE 280
+ F N+M G K D+VS++ + +H G
Sbjct: 192 EQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFN 251
Query: 281 DGLQYFDIMKK 291
D +F +++
Sbjct: 252 DAFAFFREVRR 262
>gi|359488917|ref|XP_002283393.2| PREDICTED: ATP-dependent zinc metalloprotease FTSH 6,
chloroplastic-like [Vitis vinifera]
Length = 1146
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 141/287 (49%), Gaps = 19/287 (6%)
Query: 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-- 95
S S W I + EA + MR G +P +TF LL CA +
Sbjct: 718 SGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACAAISAFN 777
Query: 96 ---------------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFV 138
NV V ++ Y R+ A +FD M R W A+L+ V
Sbjct: 778 EGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTVVSWNAVLSACV 837
Query: 139 KRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198
++ ++ F M+ SG +PD T++ +L+ C+ + L G W+H V ++ N R
Sbjct: 838 DNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKGMVVNCR 897
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
+ L+D+Y++ G + A VF RM +R + +W+++I+G A +GF EALE F M++
Sbjct: 898 LGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLAQHGFAKEALELFPKMKQSS 957
Query: 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ V+F G L ACSHAGL++DG ++F M+ ++ + P + H+G +
Sbjct: 958 ISPNYVTFLGVLCACSHAGLVDDGYRFFHDMEYVHGIEPMMIHYGAM 1004
>gi|317106770|dbj|BAJ53262.1| JMS10C05.5 [Jatropha curcas]
Length = 638
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 149/281 (53%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNN-------- 97
+ WT+ IS + RSG +A F + L G N T+L GC++ +
Sbjct: 209 ISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDGCSECRNLELGLQIHGL 268
Query: 98 ---------VMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK--RDYFE 144
V + TAL+D+YAK G + A +VFD + + + A+L GF++ RD E
Sbjct: 269 VIKLGYACAVNIGTALVDLYAKCGNLMSARMVFDGLSSKRIASFNAILAGFMENSRDGEE 328
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+ + F ++ G++PD +T +L++ AN TLG G H Y K F+ ++ V N ++
Sbjct: 329 DPIVLFNHFRLDGIKPDMVTFSRLLSLSANHSTLGRGRCYHAYAIKTGFEADLSVANAVI 388
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+Y++ G IE A ++F M+ +SWN++I +A++G + L F M K F DE+
Sbjct: 389 TMYAKCGSIEEAHRMFNVMNDHDSISWNAMISAYALHGQGAKVLLLFEEMIKKEFAPDEI 448
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ L AC+++GL DG+ F++M+ Y + P +EH+ C+
Sbjct: 449 TILSILQACTYSGLFRDGISLFNVMEPKYGIKPLLEHYACM 489
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 119/265 (44%), Gaps = 32/265 (12%)
Query: 52 ISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC-ADFP---------------- 94
I + R+G +A F M G P+ TF ++S C D
Sbjct: 114 ILEYARAGNGEKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGF 173
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
N + A+++MY K G A +F M R WTAL++G+ + ++A++ F
Sbjct: 174 LNETSIGNAIINMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFME 233
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
+ + GV D + ++L+ C+ R L +GL +H V K + V + L+D+Y++ G
Sbjct: 234 LHLCGVNFDSSLLTTILDGCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGN 293
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA--LEYFNLMQKGVFKTDEVSFTGAL 270
+ AR VF + + + S+N+I+ GF N GE + FN + K D V+F+ L
Sbjct: 294 LMSARMVFDGLSSKRIASFNAILAGFMENSRDGEEDPIVLFNHFRLDGIKPDMVTFSRLL 353
Query: 271 TA-----------CSHAGLIEDGLQ 284
+ C HA I+ G +
Sbjct: 354 SLSANHSTLGRGRCYHAYAIKTGFE 378
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 77/159 (48%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
WT+L+ G++ + FE AL M SG + T +L C++ G H +V
Sbjct: 9 WTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFGQQFHCFVI 68
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
K F +NV V +L+ +Y+R A +VF M + + +N +I+ +A G +A+
Sbjct: 69 KCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGNGEKAIR 128
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
F M + ++ +FT ++AC IE+G Q+ +
Sbjct: 129 VFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGL 167
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 91/198 (45%), Gaps = 2/198 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQ 154
NV+V T+L+ MY + A VFD M D + ++ + + E+A+ F M
Sbjct: 75 NVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGNGEKAIRVFINML 134
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
+G++P+ T ++++ C + G K F + + N ++++Y + G
Sbjct: 135 NAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNAIINMYGKKGMAR 194
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A ++F M R L+SW ++I G+ +G +A++ F + D T L CS
Sbjct: 195 EAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDGCS 254
Query: 275 HAGLIEDGLQYFDIMKKI 292
+E GLQ ++ K+
Sbjct: 255 ECRNLELGLQIHGLVIKL 272
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 138/261 (52%), Gaps = 14/261 (5%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
V W S ++ R+G +A M L G P T +LL + +NV + +
Sbjct: 203 VVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV---SFV 259
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
+M+ K L + W ++ ++ EA++ F M+ V+PD ++
Sbjct: 260 KEMFMKLANKSLVS-----------WNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAIS 308
Query: 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224
I SVL C ++ L +G +H YV ++ + N+ + N L+D+Y++ GC+E+AR+VF +M
Sbjct: 309 IASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMK 368
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
R +VSW S+I + +NG +A+ F+ MQ D ++F L+ACSHAGL+++G
Sbjct: 369 FRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRY 428
Query: 285 YFDIMKKIYRVSPQIEHHGCI 305
YF +M + ++ P+IEH C+
Sbjct: 429 YFKLMTEECKIVPRIEHFVCM 449
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 2/185 (1%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVM 153
+N + L+ YA G +FD + + F+ ++ +V + +AL F+ M
Sbjct: 69 SNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNM 128
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
G++PD+ T VL + L +G+ +H V + NV V N L+ +Y + GC+
Sbjct: 129 AGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCL 188
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A +V +M R +VSWNS++ G A NG +ALE M+ K D + L A
Sbjct: 189 VEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAV 248
Query: 274 SHAGL 278
++ L
Sbjct: 249 TNTCL 253
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 124/217 (57%), Gaps = 3/217 (1%)
Query: 92 DFPSN-NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
D SN +V+ TAL++ Y + G++ + +FD M R W+A++ G+V+ +FEEALE
Sbjct: 170 DLSSNRDVITWTALINGYVRAGQVLIGRELFDKMPERNSVSWSAMITGYVRVGFFEEALE 229
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F M ISG P++ I+ +N CA++ L G W+H Y+ + + + L+D+Y+
Sbjct: 230 LFNAMLISGFWPNHAGIVCAINACASLGALDQGRWIHCYIKRNRMDLDRVMGAALIDMYA 289
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ GCIE A +F + R + + +I G A +G A+E F M +EV+F
Sbjct: 290 KCGCIEIACSIFGELRNRDVHVYTCLISGLANHGQSATAVELFERMHSEGVVPNEVTFVS 349
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L ACS GL++ GL+ F+ M KIY PQ++H+GC+
Sbjct: 350 VLNACSRMGLVDKGLRIFENMSKIYGDEPQVQHYGCL 386
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 20/199 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
+V W++ I+ + R G EA F M + G P+H V ++ CA +
Sbjct: 208 SVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASLGALDQGRWIHC 267
Query: 96 ---NNVM-----VSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEE 145
N M + AL+DMYAK G +++A +F +R D +T L++G
Sbjct: 268 YIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANHGQSAT 327
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-QDFKDNVRVCNTLM 204
A+E F M GV P+ +T +SVLN C+ + + GL + + K + V+ L+
Sbjct: 328 AVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQHYGCLV 387
Query: 205 DVYSRFGCIEFARQVFQRM 223
D+ R G +E A+++ + M
Sbjct: 388 DLLGRAGKLEEAKKLVKEM 406
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 31/184 (16%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
W ++ F +++ +A+ F+ M S P+ T + C ++ L +GL H
Sbjct: 79 WNTVIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACHCQSI 138
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFA-------------------------------RQ 218
K ++ V N L+ +++ FGC++ A R+
Sbjct: 139 KLGWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQVLIGRE 198
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
+F +M +R VSW+++I G+ GF EALE FN M F + A+ AC+ G
Sbjct: 199 LFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASLGA 258
Query: 279 IEDG 282
++ G
Sbjct: 259 LDQG 262
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 125/215 (58%), Gaps = 4/215 (1%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRV 152
S++V + T L+DMYA+FG +D A+ VF M R W+A++ + K EAL FR
Sbjct: 214 SSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFRE 273
Query: 153 M--QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
M + P+ +T++SVL CA++ L G +H Y+ ++ + V + L+ +Y R
Sbjct: 274 MMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRC 333
Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
G +E ++VF RMH R +VSWNS+I + V+G+ +A++ F M V+F L
Sbjct: 334 GKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVL 393
Query: 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
ACSH GL+E+G + F+ M + + + PQIEH+ C+
Sbjct: 394 GACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACM 428
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 122/283 (43%), Gaps = 31/283 (10%)
Query: 27 KRPQISIQTNNSK--STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFV 84
K P S+ NN S + I C+ G + +A R+ ++PS T+
Sbjct: 26 KPPSCSVALNNPSISSGAGAKISNNQLIQSLCKEGKLKQA----IRVLSQESSPSQQTYE 81
Query: 85 TLLSGCADFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGC 127
L+ C S + ++T L+ MY+ G +D A VFD R
Sbjct: 82 LLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKR 141
Query: 128 DF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA----NVRTLGIG 181
W AL + EE L + M GVE D T VL C V L G
Sbjct: 142 TIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKG 201
Query: 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN 241
+H ++ ++ + +V + TL+D+Y+RFGC+++A VF M R +VSW+++I +A N
Sbjct: 202 KEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKN 261
Query: 242 GFVGEALEYFNLMQKGVFKT--DEVSFTGALTACSHAGLIEDG 282
G EAL F M + + + V+ L AC+ +E G
Sbjct: 262 GKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQG 304
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 153/303 (50%), Gaps = 32/303 (10%)
Query: 34 QTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD- 92
Q K +D V W+++IS + + G EA +M G P+ +T +++LSGCA
Sbjct: 320 QMQEEKIKMDV-VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASV 378
Query: 93 ---------------FP--------SNNVMVSTALLDMYAKFGRMDLATVVFDVM----R 125
+P + MV L+DMYAK ++D+A +FD + R
Sbjct: 379 GALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKER 438
Query: 126 GCDFWTALLNGFVKRDYFEEALEYFRVM--QISGVEPDYLTIISVLNVCANVRTLGIGLW 183
WT ++ G+ + +ALE M + P+ TI L CA++ L IG
Sbjct: 439 DVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQ 498
Query: 184 MHRYVPK-QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG 242
+H Y + Q + V N L+D+Y++ G I AR VF M ++ V+W S++ G+ ++G
Sbjct: 499 IHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHG 558
Query: 243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
+ EAL F M++ FK D V+ L ACSH+G+I+ G++YF+ MK + VSP EH+
Sbjct: 559 YGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHY 618
Query: 303 GCI 305
C+
Sbjct: 619 ACL 621
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 121/257 (47%), Gaps = 20/257 (7%)
Query: 47 QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------- 95
W S I + +G + F M P + TF + C + S
Sbjct: 94 HWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALS 153
Query: 96 ------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEAL 147
+NV V AL+ MY++ G + A VFD M D W +++ + K + AL
Sbjct: 154 RVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMAL 213
Query: 148 EYFRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
E F M G PD +T+++VL CA+V T +G H + + N+ V N L+D+
Sbjct: 214 EMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDM 273
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++FG ++ A VF M + +VSWN+++ G++ G +A+ F MQ+ K D V++
Sbjct: 274 YAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTW 333
Query: 267 TGALTACSHAGLIEDGL 283
+ A++ + GL + L
Sbjct: 334 SAAISGYAQRGLGYEAL 350
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 1/161 (0%)
Query: 126 GCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185
G W +L+ + + L F +M PD T V C + ++ G H
Sbjct: 91 GVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSH 150
Query: 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
F NV V N L+ +YSR G + AR+VF M +VSWNSII +A G
Sbjct: 151 ALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPK 210
Query: 246 EALEYFNLMQKGV-FKTDEVSFTGALTACSHAGLIEDGLQY 285
ALE F+ M F+ D+++ L C+ G G Q+
Sbjct: 211 MALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQF 251
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 142/280 (50%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
++ WT+ I+ ++G EA F MRL TF ++L+ C +
Sbjct: 239 SISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHA 298
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+N+ V +AL+DMY K + A VF M + WTA+L G+ + Y EE
Sbjct: 299 YIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEE 358
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A++ F MQ +G+EPD T+ SV++ CAN+ +L G H + V N L+
Sbjct: 359 AVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVT 418
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y + G IE + ++F M VSW +++ G+A G E L F M FK D+V+
Sbjct: 419 LYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVT 478
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L+ACS AGL++ G Q F+ M K +R+ P +H+ C+
Sbjct: 479 FIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCM 518
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 133/291 (45%), Gaps = 51/291 (17%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLL-----SGCADFP----- 94
V W S IS + G +L++ + M G N + I T+L GC
Sbjct: 107 VSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHG 166
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM----------------------- 124
+ V V + L+DMY+K G + A FD M
Sbjct: 167 HVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIED 226
Query: 125 ----------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
+ WTA++ GF + EA++ FR M++ +E D T SVL C
Sbjct: 227 SRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGG 286
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
V L G +H Y+ + D++DN+ V + L+D+Y + I+ A VF++M+ + +VSW ++
Sbjct: 287 VMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAM 346
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
+VG+ NG+ EA++ F MQ + D+ + +++C++ +E+G Q+
Sbjct: 347 LVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQF 397
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 34/225 (15%)
Query: 94 PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFR 151
P N+ LL Y+K + VF M D W +L++ + R + ++++ +
Sbjct: 71 PQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYN 130
Query: 152 VMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
+M +G + + + ++L + + + +GL +H +V K F+ V V + L+D+YS+
Sbjct: 131 LMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKT 190
Query: 211 GC-------------------------------IEFARQVFQRMHKRTLVSWNSIIVGFA 239
G IE +RQ+F M ++ +SW ++I GF
Sbjct: 191 GLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFT 250
Query: 240 VNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
NG EA++ F M+ + D+ +F LTAC +++G Q
Sbjct: 251 QNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQ 295
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 32/133 (24%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS------------- 230
+H ++ K + + N L+ Y++F I +AR+VF +M +R L S
Sbjct: 31 IHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLAC 90
Query: 231 ------------------WNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALT 271
WNS+I +A GF+ ++++ +NLM G F + ++ + L
Sbjct: 91 LPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLI 150
Query: 272 ACSHAGLIEDGLQ 284
S G + GLQ
Sbjct: 151 LASKQGCVHLGLQ 163
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V WT+ +S + + G E F M +G P +TF+ +LS C+ + V +
Sbjct: 442 VSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSR--AGLVQKGNQIF 499
Query: 106 DMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI 165
+ K R ++ D +T +++ F + EEA ++ M S PD +
Sbjct: 500 ESMIKEHR---------IIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFS---PDAIGW 547
Query: 166 ISVLNVCANVRTLGIGLW 183
S+L+ C R + IG W
Sbjct: 548 ASLLSSCRFHRNMEIGKW 565
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 130/217 (59%), Gaps = 2/217 (0%)
Query: 91 ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
P +V+ T+++ Y K G ++ A +FD M R W+ ++NG+ K + FE+A++
Sbjct: 178 GQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAID 237
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
F +M+ GV + ++SV++ CA++ L G H YV K N+ + L+D+Y
Sbjct: 238 LFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYW 297
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
R G IE A +VF+ + + +SW+SII G AV+G +A+ YF+ M + F +++ T
Sbjct: 298 RCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTA 357
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L+ACSH GL++ GL+ ++ MK+ Y + P++EH+GCI
Sbjct: 358 VLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCI 394
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 6/148 (4%)
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+A ++ M S + PD +T ++ + + +G H + + F+++V V N+L+
Sbjct: 102 KAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLV 161
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
+Y+ G I A ++F +M R +VSW S++ G+ G V +A E F+ M T +
Sbjct: 162 HMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSI 221
Query: 265 SFTG-ALTACSHAGLIEDGLQYFDIMKK 291
G A C E + F++MK+
Sbjct: 222 MINGYAKNNC-----FEKAIDLFELMKR 244
>gi|225468012|ref|XP_002270478.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 602
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 149/281 (53%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WTS IS ++G EA L F M P+ +T+V+++S C +
Sbjct: 168 VSWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCVTYVSVISACTGLETIFDQCALLHA 227
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEE 145
V + L+D Y+K GR+D A ++F + R + ++++G+ + + EE
Sbjct: 228 HVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLFGEE 287
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
AL+ F M+ +G+ P T+ S+LN C ++ L G +H V K + NV V + L+D
Sbjct: 288 ALKLFVEMRNNGLNPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLD 347
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-LMQKGVFKTDEV 264
+YS+ G I+ AR VF + ++ V W S+I G+A +G E L F L+ + F D +
Sbjct: 348 MYSKCGSIDEARCVFDQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVTEEGFTPDHI 407
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
FT LTAC+HAG ++ G+ YF+ M++ Y + P ++ + C+
Sbjct: 408 CFTAVLTACNHAGFLDKGIDYFNQMRRDYGLVPDLDQYACL 448
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 127/259 (49%), Gaps = 20/259 (7%)
Query: 54 RHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------N 96
R + + EA F RM GT P+ T L+ CA + +
Sbjct: 75 RPAKHANVREALESFWRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFED 134
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQ 154
N+ +++AL+D+YAK + A VFD M D WT++++GF K +EA+ +F+ M
Sbjct: 135 NLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEML 194
Query: 155 ISGVEPDYLTIISVLNVCANVRTL-GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
S ++P+ +T +SV++ C + T+ +H +V K F V + L+D YS+ G I
Sbjct: 195 GSQIKPNCVTYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRI 254
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ A +F +R + +NS+I G++ N F EAL+ F M+ + + T L AC
Sbjct: 255 DQAVLLFGTTIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGLNPTDHTLTSILNAC 314
Query: 274 SHAGLIEDGLQYFDIMKKI 292
+++ G Q ++ K+
Sbjct: 315 GSLTILQQGRQVHSLVAKM 333
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 155/281 (55%), Gaps = 21/281 (7%)
Query: 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----- 95
++ + V WT+ I + R G ++EA F M + F ++ G
Sbjct: 185 SVRSLVSWTAVIVGYARCGDMVEARKLFDGM----VDRDVAAFNVMIDGYVKMGRMDLAR 240
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
NV+ T+++ Y++ G +D A +FD M + W A++ G+ + +
Sbjct: 241 DLFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHD 300
Query: 146 ALEYFRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
AL+ F M+ + VE + +T++SVL A++ L +G W+H +V + +V VCN L+
Sbjct: 301 ALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDGSVHVCNALV 360
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y++ G I A+ VF+ M ++ SWN++I G+ VNG EALE F +M + F+ +++
Sbjct: 361 DMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGFEPNQI 420
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ T L+AC+H GL+E+G + F+ M++ + + PQIEH+GC+
Sbjct: 421 TMTSVLSACNHCGLVEEGRRCFEAMER-FGIVPQIEHYGCM 460
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 38/230 (16%)
Query: 78 PSHITFVTLLSGCADFPSN-----------------NVMVSTALLDMYAKFGRMDLATVV 120
PS TF +L GC+ + ++ V T+L+DMY KFG + A V
Sbjct: 121 PSSYTFTLILKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKV 180
Query: 121 FDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL 178
FD M R WTA++ G+ + EA + F M V+ D ++ NV +
Sbjct: 181 FDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGM----VDRD----VAAFNVMIDGYVK 232
Query: 179 GIGLWMHRYVPKQDFKDNVRVCN-----TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
M R +D D +RV N +++ YS G ++ AR +F M ++ ++SWN+
Sbjct: 233 -----MGRMDLARDLFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNA 287
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGV-FKTDEVSFTGALTACSHAGLIEDG 282
+I G+ NG +AL+ F M+ V + +EV+ L A + ++ G
Sbjct: 288 MIRGYCQNGRSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLG 337
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
P T +L C+ G +H V K F ++ V +L+D+Y +FG + FAR+V
Sbjct: 121 PSSYTFTLILKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKV 180
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI 279
F M R+LVSW ++IVG+A G + EA + F+ G+ D +F + G +
Sbjct: 181 FDEMSVRSLVSWTAVIVGYARCGDMVEARKLFD----GMVDRDVAAFNVMIDGYVKMGRM 236
Query: 280 EDGLQYFDIMK 290
+ FD M+
Sbjct: 237 DLARDLFDKMR 247
>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
Length = 874
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 145/277 (52%), Gaps = 18/277 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV------- 98
V WT+ IS ++G I A + F+RMR P+ T+ +L +
Sbjct: 370 VSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKT 429
Query: 99 ------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
V TALL Y+KFG + A +F ++ D W+A+L+ + E A F
Sbjct: 430 NYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLF 489
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGI--GLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
M I G++P+ TI SV++ CA + G+ G H K + D + V + L+ +YS
Sbjct: 490 NKMAIQGIKPNEFTISSVIDACA-CPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYS 548
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
R G I+ A+ VF+R R LVSWNS+I G+A +G+ +A+E F M+ + D V+F
Sbjct: 549 RKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLA 608
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ C+H GL+ +G QYFD M + ++++P +EH+ C+
Sbjct: 609 VIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACM 645
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 113/253 (44%), Gaps = 20/253 (7%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
D V + + R G +LE +F+ R G T +L C P
Sbjct: 62 DAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQL 121
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
V T+L+DMY K G + VF+ M + WT+LL G
Sbjct: 122 HCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQM 181
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
E + F M+ G+ P+ T SVL+ A+ L +G +H K + +V VCN+
Sbjct: 182 HSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNS 241
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
LM++Y++ G +E A+ VF M R +VSWN+++ G +N EAL+ F+ + + K
Sbjct: 242 LMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMT 301
Query: 263 EVSFTGALTACSH 275
+ ++ + C++
Sbjct: 302 QSTYATVIKLCAN 314
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 20/247 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WTS ++ + E F RMR G P+ TF ++LS A +
Sbjct: 167 VTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQ 226
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++V V +L++MYAK G ++ A VF+ M D W L+ G + EA
Sbjct: 227 SVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEA 286
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F + + + T +V+ +CAN++ L + +H V K F V L D
Sbjct: 287 LQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADA 346
Query: 207 YSRFGCIEFARQVFQ-RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
YS+ G + A +F R +VSW +II G NG + A+ F+ M++ +E +
Sbjct: 347 YSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFT 406
Query: 266 FTGALTA 272
++ L A
Sbjct: 407 YSAMLKA 413
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 1/151 (0%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
+L + +R E L+ F V + GV D T+ VL C +V +G +H K
Sbjct: 70 VLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCG 129
Query: 193 F-KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
+ V +L+D+Y + G + +VF+ M K+ +V+W S++ G A E + F
Sbjct: 130 HDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALF 189
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M+ + +F L+A + G ++ G
Sbjct: 190 FRMRAEGIWPNPFTFASVLSAVASQGALDLG 220
>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Brachypodium distachyon]
Length = 631
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 21/284 (7%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-DFPSN---- 96
+ + V W + I+ + SG ++A F+RM GT+ S T + + CA + N
Sbjct: 120 VRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQ 179
Query: 97 ------------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
N V TA+LD+YAK + A VF+ M R W++L G+V+
Sbjct: 180 LHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGL 239
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
EEAL FR Q GVE T+ ++L+ CA++ G+ +H + K F N V +
Sbjct: 240 HEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAAS 299
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-GVFKT 261
L+DVY+R G IE A +F M + +V WN++I F+ + EA+ F MQ+ G+F
Sbjct: 300 LVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIF-P 358
Query: 262 DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+EV++ L+ CSHAGL+E G YF ++ V P + H+ C+
Sbjct: 359 NEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCM 402
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 2/197 (1%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
+ + L+++Y K GR D A +VFD+M R W ++ G+ +AL+ F M
Sbjct: 91 DTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMH 150
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
G T+ S + CA + +H K N V ++DVY++ I+
Sbjct: 151 REGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIK 210
Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A VF++M +RTLV+W+S+ G+ NG EAL F Q+ + E + + L+AC+
Sbjct: 211 DACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACA 270
Query: 275 HAGLIEDGLQYFDIMKK 291
L +G+Q ++ K
Sbjct: 271 SLALKIEGIQLHAVILK 287
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%)
Query: 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196
F + +L+ R+ +I D I L +CA ++L +G H +
Sbjct: 32 FCNKLNHSSSLKDRRLARIDRNLIDVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTD 91
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256
CN L+++Y++ G + AR VF MH R++VSWN++I G+ +G +AL+ F+ M +
Sbjct: 92 TLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHR 151
Query: 257 GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
E + + + AC+ I + Q I K+
Sbjct: 152 EGTHMSEFTLSSTICACAAKYAINECKQLHTIALKL 187
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 152/311 (48%), Gaps = 51/311 (16%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA---DFPSNNV---- 98
V WT IS + + +A F+ + G P V +S C D + +
Sbjct: 69 VSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGM 128
Query: 99 ----------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVK------- 139
+V AL+DMY++ G +++A VF M D WT+LLNGF+K
Sbjct: 129 VFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAA 188
Query: 140 RDYFEE------------------------ALEYFRVMQISGVE-PDYLTIISVLNVCAN 174
R F+E LE F+ M+ G + P +TI++VL+ CA+
Sbjct: 189 RRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCAD 248
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ +G +H YV K + +V V N LMD+Y++ G + A ++FQ M KR + SW ++
Sbjct: 249 IGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTM 308
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I G A++G ALE F+ M K +EV+ L+ACSHAGL+ +G F M + +
Sbjct: 309 ISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHG 368
Query: 295 VSPQIEHHGCI 305
+ P+I+H+GC+
Sbjct: 369 IKPKIQHYGCM 379
>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 151/281 (53%), Gaps = 24/281 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS-----GCADFPSN---- 96
V WT I+ R+G EA F++M + P+ T+V +L GC
Sbjct: 173 VSWTGIITGFTRTGLYKEALDTFSKMDV---EPNLATYVCVLVSSGRVGCLSLGKGIHGL 229
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
++ AL+DMY K ++ A VF + D W ++++G V + +EA
Sbjct: 230 ILKRASLISLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEA 289
Query: 147 LEYFRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
++ F +MQ S G++PD + SVL+ CA++ + G W+H Y+ K + + ++D
Sbjct: 290 IDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVD 349
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G IE A ++F + + + +WN+++ G A++G E+L YF M K FK + V+
Sbjct: 350 MYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVT 409
Query: 266 FTGALTACSHAGLIEDGLQYFDIMK-KIYRVSPQIEHHGCI 305
F AL AC H GL+++G +YF MK + Y + P++EH+GC+
Sbjct: 410 FLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKLEHYGCM 450
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 17/172 (9%)
Query: 84 VTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYF 143
VT L ADF S + ++ ++ + + F + LL+ + D
Sbjct: 45 VTFLGKSADFASYSSVILHSIRSVLSSFS-----------------YNTLLSSYAVCDKP 87
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
+ ++ +G PD T V C + G +H V K F D++ V N+L
Sbjct: 88 RVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSL 147
Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255
+ Y G A +VF M R +VSW II GF G EAL+ F+ M
Sbjct: 148 VHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMD 199
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 140/251 (55%), Gaps = 5/251 (1%)
Query: 57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDL 116
+SG L+ ++ + LYG + G P +V+ T ++ G ++
Sbjct: 153 KSGLGLDRSIALKLVELYGKCGVLEDARKMFDG---MPERDVVACTVMIGSCFDCGMVEE 209
Query: 117 ATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
A VF+ M R WT +++G V+ F LE FR MQ+ GVEP+ +T + VL+ CA
Sbjct: 210 AIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQ 269
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ L +G W+H Y+ K + N V L+++YSR G I+ A+ +F + + + ++NS+
Sbjct: 270 LGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSM 329
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I G A++G EA+E F+ M K + + ++F G L ACSH GL++ G + F+ M+ I+
Sbjct: 330 IGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHG 389
Query: 295 VSPQIEHHGCI 305
+ P++EH+GC+
Sbjct: 390 IEPEVEHYGCM 400
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 106/248 (42%), Gaps = 34/248 (13%)
Query: 77 NPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALL 134
NP H+ + S + V+ LL +Y K +D A +F + + +T+L+
Sbjct: 39 NPKHVQSIHC-HAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLI 97
Query: 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK 194
+GFV + +A+ F M V D + ++L C R LG G +H V K
Sbjct: 98 DGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLG 157
Query: 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN-- 252
+ + L+++Y + G +E AR++F M +R +V+ +I G V EA+E FN
Sbjct: 158 LDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEM 217
Query: 253 --------------LMQKGVF---------------KTDEVSFTGALTACSHAGLIEDGL 283
L++ G F + +EV+F L+AC+ G +E G
Sbjct: 218 GTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGR 277
Query: 284 QYFDIMKK 291
M+K
Sbjct: 278 WIHAYMRK 285
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 21/212 (9%)
Query: 32 SIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA 91
+I+ N T DT V WT I R+G F M++ G P+ +TFV +LS CA
Sbjct: 210 AIEVFNEMGTRDT-VCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACA 268
Query: 92 DFPS-----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTA 132
+ N V+ AL++MY++ G +D A +FD +R D + +
Sbjct: 269 QLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNS 328
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK-Q 191
++ G EA+E F M V P+ +T + VLN C++ + +G + +
Sbjct: 329 MIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIH 388
Query: 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
+ V ++D+ R G +E A RM
Sbjct: 389 GIEPEVEHYGCMVDILGRVGRLEEAFDFIGRM 420
>gi|297605857|ref|NP_001057684.2| Os06g0493800 [Oryza sativa Japonica Group]
gi|255677066|dbj|BAF19598.2| Os06g0493800 [Oryza sativa Japonica Group]
Length = 721
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 148/277 (53%), Gaps = 21/277 (7%)
Query: 49 TSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVT-LLSGCA---------------- 91
TS ++ + R+GC +EA F M L G P + +T LL C+
Sbjct: 278 TSLLTAYARNGCNMEAVRVFRDM-LMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCYAL 336
Query: 92 -DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
+F + ++ A++ +Y K G + + +VF+ + D WTALL +V+ D +EAL
Sbjct: 337 KNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALF 396
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
+FR M G+E I SVL C+ +L G +H V K D+ V N L+ +Y+
Sbjct: 397 FFREMVRKGLESSIFCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDTSVENALVTMYA 456
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G ++ A ++F M R ++SWN++I F+ +G A++ F++MQ+ + D+ +F G
Sbjct: 457 KCGVVQVALKIFNSMRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVG 516
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L++CS GL+ +G +YF MK Y + P++EH+ C+
Sbjct: 517 LLSSCSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCM 553
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 114/262 (43%), Gaps = 21/262 (8%)
Query: 44 TTVQWTSSIS---RHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS------------ 88
+ + WTS I+ H SG A + F +M + P++ TF +L
Sbjct: 170 SVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFDVPELLPSGK 229
Query: 89 ---GCADFPSNNV--MVSTALLDMYAKFGRMDLATVVFDVMRGCDFW-TALLNGFVKRDY 142
GC V + TALL MY + G MD T + +R F T+LL + +
Sbjct: 230 QVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACRIRHDAFSRTSLLTAYARNGC 289
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
EA+ FR M + + D I S+L VC+++ L + +H Y K F+ + + N
Sbjct: 290 NMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNA 349
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
++ VY + G I + VF + + +SW +++ + N EAL +F M + ++
Sbjct: 350 IVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESS 409
Query: 263 EVSFTGALTACSHAGLIEDGLQ 284
T L ACS + G Q
Sbjct: 410 IFCITSVLRACSATSSLSCGWQ 431
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 76 TNPSHITFVTLLSGC--ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWT 131
++P + + GC + + NN+++S Y G + A VFD M R W+
Sbjct: 19 SHPRAVHGAAVKLGCLASTYLCNNLLLS------YQARGHLADARGVFDEMPRRNVVSWS 72
Query: 132 ALLNGFVKRDYFEEALEYFRVMQISGVE--PDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
L+ + +AL F M G P+ T+ +++ CA + G +H
Sbjct: 73 VLIAASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAV 132
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
K ++ V TL+D+Y++ G + + + F +R+++SW S+I +G G
Sbjct: 133 KLGVDEDESVAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSG 188
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
+CN L+ Y G + AR VF M +R +VSW+ +I + G +G+AL F M +G
Sbjct: 39 LCNNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGG 98
Query: 259 FKTDEVSFTGA--LTACSHA 276
+ SFT A + C+ A
Sbjct: 99 ERDRPNSFTVAALVAGCARA 118
>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Brachypodium distachyon]
Length = 874
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 147/279 (52%), Gaps = 22/279 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WT+ I ++ I AA F+RMR P+ T+ T+L+ A P
Sbjct: 370 VSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLT--ASIPILLPQIHAQII 427
Query: 95 ----SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
+ V TALL Y+K G + A +F ++ D W+A+L+ + + + A
Sbjct: 428 KTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATN 487
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGI--GLWMHRYVPKQDFKDNVRVCNTLMDV 206
F M + G++P+ TI S ++ CA+ T GI G H K ++D + V + L+ +
Sbjct: 488 VFIKMSMQGMKPNEFTISSAIDACAS-PTAGIDQGRQFHAISIKYRYQDAICVGSALVTM 546
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y+R G I+ AR VF+R R LVSWNS+I G+A +G+ EAL+ F M+ + D +F
Sbjct: 547 YARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATF 606
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ C+HAGL+++G QYFD M + +SP +EH+ C+
Sbjct: 607 LAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCM 645
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 4/209 (1%)
Query: 71 MRLYGTNPSHITFVTLLSGCAD--FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RG 126
+++ G P ++ L C F V V TAL+DMY K G ++ VVF+ M R
Sbjct: 106 LKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRN 165
Query: 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186
WT+LL G+V+ + + F M+ GV P+ T SVL+ A+ + +G +H
Sbjct: 166 VVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHA 225
Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
K + V VCN+L+++YS+ G +E A+ VF++M R +VSWN+++ G +N E
Sbjct: 226 QSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLE 285
Query: 247 ALEYFNLMQKGVFKTDEVSFTGALTACSH 275
AL+ F+ + + K + +++ + C++
Sbjct: 286 ALQLFHDSRASMAKLSQSTYSTVIKLCAN 314
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 20/247 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WTS ++ + + + F RMR G P+ TF ++LS A +
Sbjct: 167 VTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQ 226
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
+ V V +L++MY+K G ++ A VF M D W L+ G + ++ EA
Sbjct: 227 SVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEA 286
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F + S + T +V+ +CAN++ L + +H V K F + V +MD
Sbjct: 287 LQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDA 346
Query: 207 YSRFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
YS+ G ++ A +F M + +VSW ++I G N + A F+ M++ K +E +
Sbjct: 347 YSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFT 406
Query: 266 FTGALTA 272
++ LTA
Sbjct: 407 YSTVLTA 413
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 145 EALEYF----RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRV 199
EAL++F R ++ G + VL VC + G +H K F + V V
Sbjct: 83 EALDHFVDVHRCGRVQGA-----AVSRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGV 137
Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLMQKGV 258
L+D+Y + G +E R VF+ M KR +V+W S++ G+ + + +F + +GV
Sbjct: 138 GTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGV 197
Query: 259 FKTDEVSFTGALTACSHAGLIEDG 282
+ + +FT L+A + G ++ G
Sbjct: 198 WP-NPFTFTSVLSAVASQGAVDLG 220
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 143/312 (45%), Gaps = 50/312 (16%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC------------- 90
V W + I ++G EA F MR G TFV+LL C
Sbjct: 173 NVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVH 232
Query: 91 ----ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK----- 139
A ++++ AL+DMY K G + +A FDVM + WT++L K
Sbjct: 233 CHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVD 292
Query: 140 --RDYFE------------------------EALEYFRVMQISGVEPDYLTIISVLNVCA 173
RD+FE E L + M+ G+ PD +T+ VL+V
Sbjct: 293 AARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHG 352
Query: 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233
L G +H Y+ V V N+L+D+Y+R G ++ + +F M + +SWN
Sbjct: 353 QNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNV 412
Query: 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293
II A++G EA+ +F M F DE++F G L+ACSH GL+EDG YF M+ IY
Sbjct: 413 IIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIY 472
Query: 294 RVSPQIEHHGCI 305
V P++EH+ C+
Sbjct: 473 NVKPEVEHYACM 484
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 110/286 (38%), Gaps = 51/286 (17%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------ 95
+ S I + SGC EA + G P+ T +L C+ +
Sbjct: 75 YNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHALATHGVAI 134
Query: 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEAL 147
V V ALL A G + + +F M R W ++ G + EA
Sbjct: 135 KLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEAC 194
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
FR M+ GV D T +S+L VC+ L +G +H ++ + ++ + N L+D+Y
Sbjct: 195 ALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMY 254
Query: 208 -------------------------------SRFGCIEFARQVFQRMHKRTLVSWNSIIV 236
++ G ++ AR F++M +R ++SWN++I
Sbjct: 255 GKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMIS 314
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ G E L +N M+ DEV+ G L+ G + G
Sbjct: 315 CYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASG 360
>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
Length = 633
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 145/276 (52%), Gaps = 20/276 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLL------SGCADFP----- 94
V WT I+ + ++ EA M P+ TF +LL GC+
Sbjct: 127 VSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHAL 186
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEA 146
+V V +ALLDMYA+ +MD+A +VFD V + W AL+ GF ++ E
Sbjct: 187 AVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETT 246
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L F MQ +G + T S+ + A + L G W+H ++ K K V NT++ +
Sbjct: 247 LMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGM 306
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G + AR+VF RM KR LV+WN+++ A G EA+ +F ++K + ++++F
Sbjct: 307 YAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITF 366
Query: 267 TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302
LTACSH GL+++G YFD+MK Y V P+I+H+
Sbjct: 367 LSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHY 401
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 2/190 (1%)
Query: 95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRV 152
+ + + +L+ MY K G + A VFD M D WT L+ G+ + EA+
Sbjct: 92 AGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPD 151
Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
M + P+ T S+L IG MH K ++ ++V V + L+D+Y+R
Sbjct: 152 MLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQ 211
Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
++ A VF R+ + VSWN++I GFA L F MQ+ F +++ +A
Sbjct: 212 MDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSA 271
Query: 273 CSHAGLIEDG 282
+ G +E G
Sbjct: 272 FARIGALEQG 281
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%)
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
S++ CA + L +H ++ + + + N+L+ +Y + G + AR VF +M R
Sbjct: 65 SIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSR 124
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+VSW +I G+A N EA+ M + F+ + +FT L A G G Q
Sbjct: 125 DVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQ 182
>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g28640-like [Vitis vinifera]
Length = 511
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 143/267 (53%), Gaps = 24/267 (8%)
Query: 63 EAALEFTRMRLYGTN--PSHITFVTLLSGCAD------------------FPSNNVMVST 102
+ AL + ++ L N P TF ++S C + S++ V T
Sbjct: 86 QLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGVASSDRHVQT 145
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEP 160
AL+ YA+ M A +FD + D W LLNG+V+R EAL FR M +SGVEP
Sbjct: 146 ALVRFYAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLVSGVEP 205
Query: 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSRFGCIEFARQV 219
D + + L CA + L G W+H YV K+ + + +V + L+D+Y++ GCI+ + +V
Sbjct: 206 DEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEV 265
Query: 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ-KGVFKTDEVSFTGALTACSHAGL 278
F+ M KR + SW+++I GFA++G V +A++ MQ + + D V G + AC+HAGL
Sbjct: 266 FEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLRPDGVVLLGVIMACAHAGL 325
Query: 279 IEDGLQYFDIMKKIYRVSPQIEHHGCI 305
E+G + M+ Y + P+ EH+ C+
Sbjct: 326 QEEGQFLLENMEARYGILPKHEHYSCM 352
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 139/262 (53%), Gaps = 15/262 (5%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLLSGCADFPSNNVMVSTAL 104
V WTS I + + EA F M +YG P+ +T + +LS C+ ++++
Sbjct: 217 VSWTSMIDGYSKHKWCDEALKLFDSMLMYGVVEPNEVTMIAVLSSCSQ--KGDLILGKTF 274
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
L+ Y K +V R + A+L+ +VK + A E F M + P T
Sbjct: 275 LE-YVK---------TRNVTRSLNLMNAILDMYVKCGCLDSAREIFDTMG-AAFAPMENT 323
Query: 165 IISVLNVCANVRTLGIGLWMHR-YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
+ VL VC + L +G W+HR YV + + +V + N L+D+Y++ G I A +VF M
Sbjct: 324 LACVLPVCGQLGCLDVGQWIHRNYVRMRYNEISVILANALIDMYAKCGVIHEAAKVFNDM 383
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
+R LVSWNS+I +A +G +AL F M G FK D+++ G L+ACSH GL+ +G
Sbjct: 384 PERNLVSWNSMITAYASHGHAKQALSVFERMISGGFKPDDITLVGVLSACSHGGLVAEGQ 443
Query: 284 QYFDIMKKIYRVSPQIEHHGCI 305
+YF MK+ Y + P+ EH+ C+
Sbjct: 444 EYFQNMKRKYGIEPKNEHYACM 465
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 9/233 (3%)
Query: 61 ILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVV 120
IL A T M +H+T L+S FP + V+ AL D G ++ A ++
Sbjct: 53 ILLAMESCTSMLQLKQIQAHMTKTALIS--HTFPVSRVLAFCALSDS----GDINHAHLL 106
Query: 121 FDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL 178
F ++ + W ++ G+ K + +F M GVE D + + L C +
Sbjct: 107 FSQLQNPNTYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGV 166
Query: 179 GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF 238
G +H V K F + V N L+ Y GC+ AR VF + +R +VSW S+I G+
Sbjct: 167 LEGKSVHCVVWKMGFVYTLLVQNGLVHFYGLRGCLGLARLVFDEISERDVVSWTSMIDGY 226
Query: 239 AVNGFVGEALEYFN-LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290
+ + + EAL+ F+ ++ GV + +EV+ L++CS G + G + + +K
Sbjct: 227 SKHKWCDEALKLFDSMLMYGVVEPNEVTMIAVLSSCSQKGDLILGKTFLEYVK 279
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 142/281 (50%), Gaps = 20/281 (7%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA------------ 91
T V WTS I+ + R G +A F M G +P + ++L CA
Sbjct: 719 TVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVH 778
Query: 92 DFPSNNVM-----VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
++ N M VS AL+DMYAK G M+ A +VF + D W ++ G+ K
Sbjct: 779 NYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPN 838
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
EAL+ F MQ PD +T+ +L C ++ L IG +H + + + + V N L+
Sbjct: 839 EALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALI 897
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+Y + G + AR +F + ++ L++W +I G ++G EA+ F M+ K DE+
Sbjct: 898 DMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEI 957
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+FT L ACSH+GL+ +G +F+ M + P++EH+ C+
Sbjct: 958 TFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACM 998
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 124/264 (46%), Gaps = 21/264 (7%)
Query: 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS---------------GCA- 91
W +S + + G E+ F +M+ G + TF +L GC
Sbjct: 521 WNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVY 580
Query: 92 --DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEAL 147
F S N +V++ L+ Y K G +D A +FD + D W ++++G V + AL
Sbjct: 581 KLGFGSYNTVVNS-LIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSAL 639
Query: 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207
E+F M I V D T+++ + CANV +L +G +H K F V NTL+D+Y
Sbjct: 640 EFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMY 699
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
S+ G + A Q F++M ++T+VSW S+I + G +A+ F M+ D S T
Sbjct: 700 SKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMT 759
Query: 268 GALTACSHAGLIEDGLQYFDIMKK 291
L AC+ ++ G + ++K
Sbjct: 760 SVLHACACGNSLDKGRDVHNYIRK 783
>gi|125597302|gb|EAZ37082.1| hypothetical protein OsJ_21424 [Oryza sativa Japonica Group]
Length = 671
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 148/277 (53%), Gaps = 21/277 (7%)
Query: 49 TSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVT-LLSGCA---------------- 91
TS ++ + R+GC +EA F M L G P + +T LL C+
Sbjct: 278 TSLLTAYARNGCNMEAVRVFRDM-LMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCYAL 336
Query: 92 -DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALE 148
+F + ++ A++ +Y K G + + +VF+ + D WTALL +V+ D +EAL
Sbjct: 337 KNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALF 396
Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
+FR M G+E I SVL C+ +L G +H V K D+ V N L+ +Y+
Sbjct: 397 FFREMVRKGLESSIFCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDTSVENALVTMYA 456
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
+ G ++ A ++F M R ++SWN++I F+ +G A++ F++MQ+ + D+ +F G
Sbjct: 457 KCGVVQVALKIFNSMRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVG 516
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
L++CS GL+ +G +YF MK Y + P++EH+ C+
Sbjct: 517 LLSSCSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCM 553
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 114/262 (43%), Gaps = 21/262 (8%)
Query: 44 TTVQWTSSIS---RHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS------------ 88
+ + WTS I+ H SG A + F +M + P++ TF +L
Sbjct: 170 SVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFDVPELLPSGK 229
Query: 89 ---GCADFPSNNV--MVSTALLDMYAKFGRMDLATVVFDVMRGCDFW-TALLNGFVKRDY 142
GC V + TALL MY + G MD T + +R F T+LL + +
Sbjct: 230 QVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACRIRHDAFSRTSLLTAYARNGC 289
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
EA+ FR M + + D I S+L VC+++ L + +H Y K F+ + + N
Sbjct: 290 NMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNA 349
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
++ VY + G I + VF + + +SW +++ + N EAL +F M + ++
Sbjct: 350 IVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESS 409
Query: 263 EVSFTGALTACSHAGLIEDGLQ 284
T L ACS + G Q
Sbjct: 410 IFCITSVLRACSATSSLSCGWQ 431
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 76 TNPSHITFVTLLSGC--ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWT 131
++P + + GC + + NN+++S Y G + A VFD M R W+
Sbjct: 19 SHPRAVHGAAVKLGCLASTYLCNNLLLS------YQARGHLADARGVFDEMPRRNVVSWS 72
Query: 132 ALLNGFVKRDYFEEALEYFRVMQISGVE--PDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
L+ + +AL F M G P+ T+ +++ CA + G +H
Sbjct: 73 VLIAASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAV 132
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245
K ++ V TL+D+Y++ G + + + F +R+++SW S+I +G G
Sbjct: 133 KLGVDEDESVAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSG 188
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258
+CN L+ Y G + AR VF M +R +VSW+ +I + G +G+AL F M +G
Sbjct: 39 LCNNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGG 98
Query: 259 FKTDEVSFTGA--LTACSHA 276
+ SFT A + C+ A
Sbjct: 99 ERDRPNSFTVAALVAGCARA 118
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 19/280 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
++ WT+ ++ ++G EA F RMR G TF ++L+ C +
Sbjct: 237 SITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHA 296
Query: 96 --------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+NV V +AL+DMY+K + LA VF M + WTAL+ G+ + EE
Sbjct: 297 YIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEE 356
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F MQ G++PD T+ SV++ CAN+ +L G H + V N L+
Sbjct: 357 AVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVT 416
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y + G IE A ++F M VSW +++ G+A G E ++ F M K D V+
Sbjct: 417 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVT 476
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
F G L+ACS AG +E G YF M+K + + P +H+ C+
Sbjct: 477 FIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCM 516
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 33/222 (14%)
Query: 97 NVMVSTALLDMYAK----------FGRMDLATVV---------------------FDVM- 124
N V + L+DMYAK F +D VV F+VM
Sbjct: 174 NAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMT 233
Query: 125 -RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
R WT ++ GF + EALE FR M+ G+ D T S+L C + L G
Sbjct: 234 DRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQ 293
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H Y+ + + DNV V + L+D+YS+ I+ A VF+RM + ++SW ++IVG+ NG
Sbjct: 294 IHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGC 353
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285
EA+ F+ MQ+ D+ + +++C++ +E+G Q+
Sbjct: 354 SEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQF 395
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 33/231 (14%)
Query: 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--- 95
+ T + WT+ I + ++GC EA F+ M+ G +P T +++S CA+ S
Sbjct: 332 RMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEE 391
Query: 96 --------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVK 139
+ + VS AL+ +Y K G ++ A +FD M D WTAL++G+ +
Sbjct: 392 GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQ 451
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM-------HRYVPKQD 192
+E ++ F M GV+PD +T I VL+ C+ + G H VP D
Sbjct: 452 FGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDD 511
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT-LVSWNSIIVGFAVNG 242
++D+YSR G ++ A + ++M + W +++ + G
Sbjct: 512 HY------TCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRG 556
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 138/258 (53%), Gaps = 20/258 (7%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFP-----------------SNNVMVSTALLDMYAK 110
+ RM+ G TF LL C +++V V L+ MY
Sbjct: 76 YKRMQERGLVSDSFTFSFLLKVCGQLGLVLLGRLMHCSTLKRGLNSHVFVRNTLVHMYGT 135
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
F ++ + +F+ + + W +++ V F EALE F M G+EPD T + +
Sbjct: 136 FKDIEASRQLFEEIPNPELVAWNIIIDCHVSCGKFNEALEMFSRMLKFGIEPDEATFVVI 195
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
L+ C+ + L G W+H + V N+L+D+Y++ G ++ A ++F M+K+
Sbjct: 196 LSACSALGALDFGRWVHSCISNIGHGCITEVNNSLLDMYAKCGALQEAFEIFNGMNKKNT 255
Query: 229 VSWNSIIVGFAVNGFVGEALEYF-NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287
V+WN++I+G A +G+ EAL F N++++ ++ D+++F L+ACSH G+++ G ++FD
Sbjct: 256 VTWNTMILGLASHGYANEALALFSNMLEQKLWAPDDITFLVVLSACSHGGMVDKGWRFFD 315
Query: 288 IMKKIYRVSPQIEHHGCI 305
IMKK Y + P I+H+GC+
Sbjct: 316 IMKKEYHIQPTIKHYGCM 333
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 10/199 (5%)
Query: 109 AKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166
A+ G M+ A VF+ + D + ++ GF K + +A +Y++ MQ G+ D T
Sbjct: 33 AEHGDMNYAVSVFEKIGDPDAFIFNTMIRGFGKANDPRKAFDYYKRMQERGLVSDSFTFS 92
Query: 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
+L VC + + +G MH K+ +V V NTL+ +Y F IE +RQ+F+ +
Sbjct: 93 FLLKVCGQLGLVLLGRLMHCSTLKRGLNSHVFVRNTLVHMYGTFKDIEASRQLFEEIPNP 152
Query: 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286
LV+WN II G EALE F+ M K + DE +F L+ACS G ++ G
Sbjct: 153 ELVAWNIIIDCHVSCGKFNEALEMFSRMLKFGIEPDEATFVVILSACSALGALDFGRWVH 212
Query: 287 DIMKKIYRVSPQIEHHGCI 305
+ I HGCI
Sbjct: 213 SCISNI--------GHGCI 223
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 24/222 (10%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-----DFPS----- 95
V W I H G EA F+RM +G P TFV +LS C+ DF
Sbjct: 155 VAWNIIIDCHVSCGKFNEALEMFSRMLKFGIEPDEATFVVILSACSALGALDFGRWVHSC 214
Query: 96 -NNV------MVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+N+ V+ +LLDMYAK G + A +F+ M + W ++ G Y EA
Sbjct: 215 ISNIGHGCITEVNNSLLDMYAKCGALQEAFEIFNGMNKKNTVTWNTMILGLASHGYANEA 274
Query: 147 LEYFRVMQISGV-EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF--KDNVRVCNTL 203
L F M + PD +T + VL+ C++ + G W + K+++ + ++ +
Sbjct: 275 LALFSNMLEQKLWAPDDITFLVVLSACSHGGMVDKG-WRFFDIMKKEYHIQPTIKHYGCM 333
Query: 204 MDVYSRFGCIEFARQVFQRMHKR-TLVSWNSIIVGFAVNGFV 244
+D+ R G +E A ++ M + + W +++ ++G V
Sbjct: 334 VDILGRAGFVEEAYRLISNMPMQCNAIVWRTLLAACRLHGNV 375
>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
Length = 874
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 145/277 (52%), Gaps = 18/277 (6%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV------- 98
V WT+ IS ++G I A + F+RMR P+ T+ +L +
Sbjct: 370 VSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKT 429
Query: 99 ------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYF 150
V TALL Y+KFG + A +F ++ D W+A+L+ + E A F
Sbjct: 430 NYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLF 489
Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGI--GLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
M I G++P+ TI SV++ CA + G+ G H K + D + V + L+ +YS
Sbjct: 490 NKMAIQGIKPNEFTISSVIDACA-CPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYS 548
Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
R G I+ A+ VF+R R LVSWNS+I G+A +G+ +A+E F M+ + D V+F
Sbjct: 549 RKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLA 608
Query: 269 ALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ C+H GL+ +G QYFD M + ++++P +EH+ C+
Sbjct: 609 VIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACM 645
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 112/253 (44%), Gaps = 20/253 (7%)
Query: 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
D V + + R G + E +F+ R G T +L C P
Sbjct: 62 DAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQL 121
Query: 96 -----------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDY 142
V T+L+DMY K G + VF+ M + WT+LL G
Sbjct: 122 HCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQM 181
Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202
E + F M+ G+ P+ T SVL+ A+ L +G +H K + +V VCN+
Sbjct: 182 HSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNS 241
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262
LM++Y++ G +E A+ VF M R +VSWN+++ G +N EAL+ F+ + + K
Sbjct: 242 LMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMT 301
Query: 263 EVSFTGALTACSH 275
+ ++ + C++
Sbjct: 302 QSTYATVIKLCAN 314
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 20/247 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V WTS ++ + E F RMR G P+ TF ++LS A +
Sbjct: 167 VTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQ 226
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
++V V +L++MYAK G ++ A VF+ M D W L+ G + EA
Sbjct: 227 SVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEA 286
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F + + + T +V+ +CAN++ L + +H V K F V L D
Sbjct: 287 LQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADA 346
Query: 207 YSRFGCIEFARQVFQ-RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
YS+ G + A +F R +VSW +II G NG + A+ F+ M++ +E +
Sbjct: 347 YSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFT 406
Query: 266 FTGALTA 272
++ L A
Sbjct: 407 YSAMLKA 413
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 1/151 (0%)
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
+L + +R E L+ F V + GV D T+ VL C +V +G +H K
Sbjct: 70 VLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCG 129
Query: 193 F-KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
+ V +L+D+Y + G + +VF+ M K+ +V+W S++ G A E + F
Sbjct: 130 HDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALF 189
Query: 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
M+ + +F L+A + G ++ G
Sbjct: 190 FRMRAEGIWPNPFTFASVLSAVASQGALDLG 220
>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 603
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 156/311 (50%), Gaps = 27/311 (8%)
Query: 22 NQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHI 81
N LK Q + +I V W + I+ + + GC+ EA F RM + G PS
Sbjct: 153 NTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRF 212
Query: 82 TFVTLLSGCA---DFPS--------------NNVMVSTALLDMYAKFGRMDLATVVFDVM 124
T +LS A D + + V VS AL+DMY K + A ++F+++
Sbjct: 213 TITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMI 272
Query: 125 RGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182
D W ++++ + + L F M SG+ PD +TI +VL C+++ L G
Sbjct: 273 NEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGR 332
Query: 183 WMHRY-----VPKQDFK---DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+H Y + K D DN+ V N +MD+Y++ G + A ++F M K+ + SWN +
Sbjct: 333 EIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIM 392
Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
I+G+ ++G+ EAL F+ M + FK +EV+ G L+AC+HAG + G + M+ +
Sbjct: 393 IMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFG 452
Query: 295 VSPQIEHHGCI 305
V P IEH+ C+
Sbjct: 453 VIPTIEHYTCV 463
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 109/238 (45%), Gaps = 16/238 (6%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCADFPSN--------------NVMVSTALLDMYAKFGR 113
+ +MRL G P TF ++ C + +V V +AL++ Y K G
Sbjct: 101 YKKMRLEGVMPDKYTFPCVVRTCCEVMEVKKIHGCLLKMGLELDVFVGSALVNTYLKNGS 160
Query: 114 MDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV 171
M+ A VF + R W A++NG+ K +EALE FR M + GV P TI +L+V
Sbjct: 161 MEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSV 220
Query: 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW 231
A+ L G +H V K + V V N L+D+Y + I A +F+ ++++ + SW
Sbjct: 221 FASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSW 280
Query: 232 NSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
NSII G L F+ M D V+ T L ACSH + G + M
Sbjct: 281 NSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYM 338
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 101/194 (52%), Gaps = 6/194 (3%)
Query: 102 TALLDMYAKFGRMDLATVVF-DVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158
T+L++MY+K G+M A +VF D R + A+++GFV + ++++ M++ GV
Sbjct: 50 TSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGV 109
Query: 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218
PD T V+ C V + +H + K + +V V + L++ Y + G +E A++
Sbjct: 110 MPDKYTFPCVVRTCCEVMEVK---KIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQK 166
Query: 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
VF + R +V WN++I G+A G + EALE F M + TG L+ + G
Sbjct: 167 VFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGD 226
Query: 279 IEDGLQYFDIMKKI 292
+++G I+ K+
Sbjct: 227 LDNGKTVHGIVMKM 240
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF-QRMH 224
++ L CA+ + L G +H + F + +L+++YS+ G + A VF H
Sbjct: 15 VAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCH 74
Query: 225 KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS--------HA 276
+R + ++N+II GF NG + +++ M+ D+ +F + C H
Sbjct: 75 ERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKKIHG 134
Query: 277 GLIEDGLQ 284
L++ GL+
Sbjct: 135 CLLKMGLE 142
>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 142/262 (54%), Gaps = 22/262 (8%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
+ WT+ I+ + +SG + A+E F ++S + V +L+
Sbjct: 27 MSWTAIITAYVQSGECDKEAIEL--------------FCKMISASVN------CVGNSLI 66
Query: 106 DMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
MYA+ GRM+ A FD++ + + A+++G+ K EEA F + +G+
Sbjct: 67 SMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAF 126
Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
T S+L+ A++ +G G +H + K +K N +CN L+ +YSR G IE A QVF M
Sbjct: 127 TFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEM 186
Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
R ++SW S+I GFA +GF ALE F+ M + K +E+++ L+ACSH G+I +G
Sbjct: 187 EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQ 246
Query: 284 QYFDIMKKIYRVSPQIEHHGCI 305
++F+ M K + + P++EH+ C+
Sbjct: 247 KHFNSMYKEHGIVPRMEHYACM 268
>gi|224121748|ref|XP_002330643.1| predicted protein [Populus trichocarpa]
gi|222872247|gb|EEF09378.1| predicted protein [Populus trichocarpa]
Length = 777
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 144/281 (51%), Gaps = 21/281 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPSNNV------ 98
V W + I SG + A+E F M G +P+ +TF+ LL+ + ++ +
Sbjct: 424 VSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHA 483
Query: 99 -----------MVSTALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFE 144
+ ALL Y K G M+ +F M R W ++++G++ D
Sbjct: 484 LILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNDLLC 543
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
+A++ +M G D T +VL+ CA V TL G+ +H + + +V + + L+
Sbjct: 544 KAMDLVWLMMQRGQRLDCFTFATVLSACATVATLERGMEVHACAIRACLESDVVIGSALV 603
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
D+YS+ G I++A + F M R L SWNS+I G+A +G+ AL F M+ D +
Sbjct: 604 DMYSKCGRIDYASRFFNLMPMRNLYSWNSMISGYARHGYGDNALRLFTRMKLSGQLPDHI 663
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F G L+ACSH GL+++G +YF M ++Y + P++EH+ C+
Sbjct: 664 TFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCM 704
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 106/218 (48%), Gaps = 25/218 (11%)
Query: 82 TFVTLLSGCADFP----------------------SNNVMVSTALLDMYAKFGRMDLATV 119
++V LLS CA+F V V L++MYAK G +D A
Sbjct: 253 SYVILLSACAEFALLDEGRRKGREVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARS 312
Query: 120 VFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT 177
VF +M D W +++ G + FE+A++ + M+ +G+ P T+IS L+ CA++
Sbjct: 313 VFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFTLISALSSCASLGC 372
Query: 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
+ +G H K +V V NTL+ +Y+ G + ++VF M +R VSWN++I
Sbjct: 373 ILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETGHLAECQKVFSWMLERDQVSWNTVIGA 432
Query: 238 FAVNGF-VGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
A +G V EA+E F M + + + V+F L S
Sbjct: 433 LADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVS 470
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 121/274 (44%), Gaps = 33/274 (12%)
Query: 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTN----PSHITFVTLL-SGCADFPSN 96
I ++ W S +S + + G F+ M++ + P+ TF +L+ + C+ S
Sbjct: 107 IRNSIYWNSIVSVYSQRGDAASCFELFSSMQMADSGLSLKPNEYTFGSLITAACSSVDSG 166
Query: 97 ------------------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNG 136
N+ V +AL +++ G D A +F+ M R L+ G
Sbjct: 167 LSLLGQILARIKKSGLLANLYVGSALAGGFSRLGSFDYARKIFEQMTARNAVSMNGLMVG 226
Query: 137 FVKRDYFEEALEYFR-VMQISGVEPDYLTIISVLNVCANVRTLG----IGLWMHRYVPKQ 191
V++ EEA+E F+ + + D I+ L+ CA L G +H Y +
Sbjct: 227 LVRQKCGEEAVEVFKETRHLVDINVDSYVIL--LSACAEFALLDEGRRKGREVHGYAIRT 284
Query: 192 DFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 250
D V V N L+++Y++ G I+ AR VF M + VSWNS+I G N +A++
Sbjct: 285 GLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKS 344
Query: 251 FNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+N M+K + AL++C+ G I G Q
Sbjct: 345 YNSMRKTGLMPSNFTLISALSSCASLGCILLGQQ 378
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 12/174 (6%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI--GLWMHRY 187
W L++G+ + ++A + M G P+ S + C G+ G+ +H
Sbjct: 9 WACLISGYTQNGMPDDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLCGLQLGMQIHGL 68
Query: 188 VPKQDFKDNVRVCNTLMDVYSRF-GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246
+ K + ++ +CN L+ +Y ++ G I++AR VF + R + WNSI+ ++ G
Sbjct: 69 ILKSPYANDASLCNVLISMYGKYLGYIDYARSVFDEIEIRNSIYWNSIVSVYSQRGDAAS 128
Query: 247 ALEYFNLMQKG----VFKTDEVSFTGALT-ACSHAGLIEDGLQYF-DIMKKIYR 294
E F+ MQ K +E +F +T ACS ++ GL I+ +I +
Sbjct: 129 CFELFSSMQMADSGLSLKPNEYTFGSLITAACSS---VDSGLSLLGQILARIKK 179
>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 488
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 143/264 (54%), Gaps = 27/264 (10%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
TV W + IS + + G +++A F +M P NV+ T++
Sbjct: 138 TVSWNTMISGYIKVGEVMKARELFEKM----------------------PEKNVVSWTSM 175
Query: 105 LDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
+ YAK G + A + F+ M R W ++++ +V+ F+EAL+ F M G+ PD
Sbjct: 176 ISAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDG 235
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYSRFGCIEFARQVFQ 221
T +SV + C+++ L +G +H + DF V L+++Y++ G I A +F
Sbjct: 236 YTFVSVFSACSHLGNLMLGTKIHYAI--DDFSQLGVIAATALIEMYAKCGDINRAFNLFI 293
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
++ K+ + WN ++ A++G +AL+ F+LMQK K ++ +F GAL ACSH G++E+
Sbjct: 294 KIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGALFACSHGGMVEE 353
Query: 282 GLQYFDIMKKIYRVSPQIEHHGCI 305
G FD+M+K Y++ P+IEH GCI
Sbjct: 354 GQTIFDMMEKEYKIRPRIEHFGCI 377
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 15/151 (9%)
Query: 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF------ 210
G++P T VL CA++ G +H + K F N V + L +Y F
Sbjct: 25 GLKPHSFTYPFVLKSCADLGWFWDGKKVHCRILKTGFSLNSSVSDALFHLYVNFSKFTGP 84
Query: 211 -----GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
G AR+VF M R++ WN +I+ + G V A + FN M+ D VS
Sbjct: 85 KDAADGMASDARKVFDEMCVRSVEVWNRMILRYTSTGDVSGAQKLFNTME----DRDTVS 140
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296
+ ++ G + + F+ M + VS
Sbjct: 141 WNTMISGYIKVGEVMKARELFEKMPEKNVVS 171
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 139/267 (52%), Gaps = 22/267 (8%)
Query: 61 ILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV------------------MVST 102
++EA F M+ G NPS ITF +LL C N+ +
Sbjct: 632 LVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGV 691
Query: 103 ALLDMYAKFGRMDLATVVFDVM---RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVE 159
+LL MY R A ++F + WTA+++G + EEAL+ ++ M +
Sbjct: 692 SLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNAR 751
Query: 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219
PD T SVL C+ + +LG G +H + + + ++D+Y++ G ++ + QV
Sbjct: 752 PDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQV 811
Query: 220 FQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278
F+ M K ++SWNS+IVGFA NG+ AL+ F+ M+ + D+V+F G LTACSHAG
Sbjct: 812 FEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGR 871
Query: 279 IEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+ +G + FDIM Y++ P+++H C+
Sbjct: 872 VSEGREIFDIMVHSYKIVPRLDHCACM 898
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 129/258 (50%), Gaps = 19/258 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
V W IS H + GC +EA F M G + T ++LS A +
Sbjct: 315 VAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQ 374
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+NV V ++L++MYAK +M+ A VFD + R W A+L G+ + Y +
Sbjct: 375 AIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKV 434
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
++ F M+ G PD T S+L+ CA + L +G +H ++ K +F+ N+ V NTL+D+
Sbjct: 435 MKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDM 494
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y++ G +E ARQ F+ + R VSWN+IIVG+ EA F M DEVS
Sbjct: 495 YAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSL 554
Query: 267 TGALTACSHAGLIEDGLQ 284
L+ C++ +E G Q
Sbjct: 555 ASILSGCANLQALEQGEQ 572
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 135/265 (50%), Gaps = 20/265 (7%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V W + + + ++G + F+ MR G P T+ ++LS CA
Sbjct: 416 VLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSF 475
Query: 95 ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEA 146
N+ V L+DMYAK G ++ A F+ +R D W A++ G+V+ + +EA
Sbjct: 476 IIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEA 535
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
FR M + G+ PD +++ S+L+ CAN++ L G +H ++ K + + ++L+D+
Sbjct: 536 FNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDM 595
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
Y + G IE AR VF M R++VS N+II G+A N V EA++ F MQ E++F
Sbjct: 596 YVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLV-EAIDLFQEMQNEGLNPSEITF 654
Query: 267 TGALTACSHAGLIEDGLQYFDIMKK 291
L AC+ + G Q +++K
Sbjct: 655 ASLLDACTGPYKLNLGRQIHCLIQK 679
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 129/249 (51%), Gaps = 20/249 (8%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTAL 104
TV WT+ I+ + + G EA F M+ G P + FVT+++ C
Sbjct: 248 TVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGL----------- 296
Query: 105 LDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
GR+D A +F M + W +++G VKR EA+++F+ M +GV+
Sbjct: 297 -------GRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTR 349
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
T+ SVL+ A++ L GL +H KQ NV V ++L+++Y++ +E A++VF
Sbjct: 350 STLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDA 409
Query: 223 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
+ +R LV WN+++ G+A NG+ + ++ F+ M+ F DE ++T L+AC+ +E G
Sbjct: 410 LDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMG 469
Query: 283 LQYFDIMKK 291
Q + K
Sbjct: 470 RQLHSFIIK 478
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 100/189 (52%), Gaps = 2/189 (1%)
Query: 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISG 157
+ +A++D+YAK G ++ A F+ + D W ++L+ + ++ E+ + F +Q G
Sbjct: 118 LGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCG 177
Query: 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
V P+ T VL+ CA + + +G +H V K F+ N +L+D+YS+ G + AR
Sbjct: 178 VSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDAR 237
Query: 218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277
++F + VSW ++I G+ G EAL+ F MQK D+V+F +TAC G
Sbjct: 238 KIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLG 297
Query: 278 LIEDGLQYF 286
++D F
Sbjct: 298 RLDDACDLF 306
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 107/227 (47%), Gaps = 34/227 (14%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-------- 95
+T+ WT+ IS H ++GC EA + M P TF ++L C+ S
Sbjct: 718 STILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIH 777
Query: 96 ---------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD---FWTALLNGFVKRDYF 143
++ + +A++DMYAK G M + VF+ M + W +++ GF K Y
Sbjct: 778 SLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYA 837
Query: 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-----LWMHRY--VPKQDFKDN 196
E AL+ F M+ + + PD +T + VL C++ + G + +H Y VP+ D
Sbjct: 838 ENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDH--- 894
Query: 197 VRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 242
C ++D+ R+G ++ A + +++ + + W +++ ++G
Sbjct: 895 ---CACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHG 938
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 54/257 (21%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-----DFPSN---- 96
+ W S +S + R G + + F ++ G +P+ T+ +LS CA D
Sbjct: 148 LAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCG 207
Query: 97 --------NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
N +L+DMY+K G + A +FD + D WTA++ G+V+ EEA
Sbjct: 208 VIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEA 267
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
L+ F MQ G+ PD + ++V+ C +GL
Sbjct: 268 LKVFEDMQKLGLVPDQVAFVTVITAC-------VGL------------------------ 296
Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
G ++ A +F +M +V+WN +I G G EA+++F M K K+ +
Sbjct: 297 ----GRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTL 352
Query: 267 TGALTACSHAGLIEDGL 283
L+A + + GL
Sbjct: 353 GSVLSAIASLEALNYGL 369
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243
+H K F R+ + ++D+Y++ G +EFA + F ++ KR +++WNS++ ++ G
Sbjct: 103 IHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGS 162
Query: 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACS-----------HAGLIEDGLQY 285
+ + + F +Q ++ ++ L++C+ H G+I+ G ++
Sbjct: 163 LEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEF 215
>gi|413943921|gb|AFW76570.1| hypothetical protein ZEAMMB73_758095 [Zea mays]
Length = 397
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 143/272 (52%), Gaps = 6/272 (2%)
Query: 36 NNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS 95
NNSKS T + +S S E+ T + +Y N V + P
Sbjct: 108 NNSKSASFTVESISLKVSSSIPSSLARESPY-LTLLNMYMKNSYLEEAVKMFE---QMPE 163
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
N++ T L+ Y G+ + A V++ D WTA++N V+ F+EAL F+ M
Sbjct: 164 RNIISWTILVSGYGITGQSNKARVLYYQCTQKDLILWTAMINACVQHGSFDEALTLFQDM 223
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
Q+ VEPD ++I++L AN+ W+H Y ++ K + TLM++ S+ G +
Sbjct: 224 QLQHVEPDKFSVITLLTCYANIGAFDQCEWIHWYAEDKNMKIDAVRDTTLMEMCSKCGHV 283
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
+ + Q+F+RM + +V+W +II G NG +ALE F Q+ K D ++FT L+AC
Sbjct: 284 DKSLQIFRRMQGKDVVAWTAIICGLTTNGQASKALELFEEKQRSKTKPDGITFTRVLSAC 343
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
H GL+++G ++F MK++Y++ +I+H+ C+
Sbjct: 344 CHGGLVDEGQRHFQAMKEVYQIEMRIKHYSCL 375
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 158/313 (50%), Gaps = 55/313 (17%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
V WTS I+ + R+G +A F M G P + + LS C+
Sbjct: 203 VSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLL 262
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFD-VMRG--CDFWTALLNGFVK---- 139
++N++V AL+DMYAK G + A VFD V RG + W A+++G+ K
Sbjct: 263 VGQKRIRMTDNLVV--ALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHV 320
Query: 140 ---RDYFEE------------------------ALEYFRVMQISGVEPDYLTIISVLNVC 172
R F++ AL+ F M+ G+ D T++S+L C
Sbjct: 321 DVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTAC 380
Query: 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232
A++ L G +H + ++ +++V + L+D+Y + G ++ A VF RM +R + +W
Sbjct: 381 ASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWT 440
Query: 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
++I G A NG +ALE F M++ F+ V++ LTACSH+ L+++G +F+ M+ +
Sbjct: 441 AMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSL 500
Query: 293 YRVSPQIEHHGCI 305
+++ PQ+EH+GC+
Sbjct: 501 HKLHPQVEHYGCM 513
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 98/211 (46%), Gaps = 21/211 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
+ + S I+ + SG + +A F +MR +G + T V+LL+ CA +
Sbjct: 336 ITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHAS 395
Query: 96 -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
+V + TALLDMY K GR+D AT VF M R WTA++ G ++A
Sbjct: 396 IEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDA 455
Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG-LWMHRYVPKQDFKDNVRVCNTLMD 205
LE F M+ G +P +T I+VL C++ L G L + V ++D
Sbjct: 456 LESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMID 515
Query: 206 VYSRFGCIEFARQVFQRMH-KRTLVSWNSII 235
+ +R G ++ A + Q M + V W SI+
Sbjct: 516 LLARSGLLDEAMHLVQTMPMQPNAVIWGSIL 546
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 104/255 (40%), Gaps = 65/255 (25%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF----------------------- 129
PS +V+ L+ MYA G D A FD + D
Sbjct: 135 LPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLL 194
Query: 130 ----------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLG 179
WT+L+ G+ + +A+ F M GV PD + +I L+ C+ ++ L
Sbjct: 195 VQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLD 254
Query: 180 IGLWMHRYVPKQDFK--DNVRVC------------------------------NTLMDVY 207
+G +H V ++ + DN+ V N ++D Y
Sbjct: 255 LGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGY 314
Query: 208 SRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
+ G ++ AR +F +M R ++++NS+I G+ +G + +AL+ F M++ + D +
Sbjct: 315 CKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVV 374
Query: 268 GALTACSHAGLIEDG 282
LTAC+ G + G
Sbjct: 375 SLLTACASLGALPHG 389
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 146/281 (51%), Gaps = 21/281 (7%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-------- 96
TV + + +S + + +A L F +M G + +T + L+ C P N
Sbjct: 108 TVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVS-PINLELGSSLH 166
Query: 97 ----------NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFE 144
+V V + MY K G ++ A +FD M +G W A+++G+ +
Sbjct: 167 CSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLAT 226
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
LE +R M ++GV PD +T++ VL+ CAN+ +G + + F N + N L+
Sbjct: 227 NVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALI 286
Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
++Y+R G + A+ VF M +RTLVSW +II G+ ++G A++ F M + + D
Sbjct: 287 NMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGT 346
Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
+F L+ACSHAGL + GL+YF +MK+ Y++ P EH+ C+
Sbjct: 347 AFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCM 387
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 113/256 (44%), Gaps = 25/256 (9%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSN-------- 96
+ W + + + L+A + +M +G P+ TF L CA
Sbjct: 5 STPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHG 64
Query: 97 ---------NVMVSTALLDMYAKFGRMDLATVVFD------VMRGCDFWTALLNGFVKRD 141
V T L+ MY K +D A VF+ + C + AL++G+V
Sbjct: 65 QITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVC--YNALVSGYVSNS 122
Query: 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201
+A+ FR M GV + +T++ ++ C + L +G +H K F +V V N
Sbjct: 123 KCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVN 182
Query: 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261
+ +Y + G + +A+++F M + L+SWN+++ G+A NG LE + M
Sbjct: 183 CFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHP 242
Query: 262 DEVSFTGALTACSHAG 277
D V+ G L++C++ G
Sbjct: 243 DPVTLVGVLSSCANLG 258
>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 802
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 157/316 (49%), Gaps = 54/316 (17%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLLSGCADF--------- 93
T V W + I+ + ++G +A F+RM Y T P T ++LS CA+
Sbjct: 258 TIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQV 317
Query: 94 -------------PSNNVMVS----------------------------TALLDMYAKFG 112
N ++S TALL+ Y K G
Sbjct: 318 HAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLG 377
Query: 113 RMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN 170
M A +FDVM D WTA++ G+ + + +EA+E FR+M SG EP+ T+ +VL+
Sbjct: 378 DMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLS 437
Query: 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLV 229
VCA++ L G +H + + + V N+++ +Y+R G + +AR+VF R+H ++ V
Sbjct: 438 VCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETV 497
Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289
+W S+IV A +G +A+ F M + K D ++F G L+AC+H G +++G +YF +
Sbjct: 498 TWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQL 557
Query: 290 KKIYRVSPQIEHHGCI 305
+ + + P++ H+ C+
Sbjct: 558 QDKHGIVPEMSHYACM 573
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 34/222 (15%)
Query: 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQ 154
NV +LL +YAK GR+ A VF M D WT ++ G + F EA++ F M
Sbjct: 95 NVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMV 154
Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
G+ P T+ +VL+ CA G+G +H +V K V V N+++++Y + G E
Sbjct: 155 TDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAE 214
Query: 215 FARQVFQRMHKRT-------------------------------LVSWNSIIVGFAVNGF 243
AR VF+RM +R+ +VSWN++I G+ NG
Sbjct: 215 TARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGL 274
Query: 244 VGEALEYFN-LMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
+AL +F+ ++ DE + T L+AC++ G++ G Q
Sbjct: 275 NAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQ 316
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 36/228 (15%)
Query: 93 FPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYF 150
P +V A++ + A GRMDLA +F+ M R W A++ G+ + +AL +F
Sbjct: 223 MPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFF 282
Query: 151 -RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209
R++ S + PD TI SVL+ CAN+ + IG +H Y+ + +V N L+ +Y++
Sbjct: 283 SRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAK 342
Query: 210 FGCIEFARQVFQR---------------------------------MHKRTLVSWNSIIV 236
G +E AR V Q+ M R +V+W ++IV
Sbjct: 343 SGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIV 402
Query: 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284
G+ NG EA+E F LM + + + + L+ C+ +E G Q
Sbjct: 403 GYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQ 450
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 73/197 (37%), Gaps = 24/197 (12%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA--DFPSNNVMVST 102
TV WTS I + G +A F M G P ITFV +LS C F
Sbjct: 496 TVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQ 555
Query: 103 ALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY 162
L D + M + D++ + F EA E+ + M VEPD
Sbjct: 556 QLQDKHGIVPEMSHYACMVDLL-------------ARAGLFSEAQEFIQQMP---VEPDA 599
Query: 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222
+ S+L+ C + + + D N + L +VYS G A ++++R
Sbjct: 600 IAWGSLLSACRVHKNADLAELAAEKLLSID-PGNSGAYSALSNVYSACGRWNDAAKIWKR 658
Query: 223 -----MHKRTLVSWNSI 234
+ K T SW I
Sbjct: 659 RKDKSVKKETGFSWTHI 675
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 139/278 (50%), Gaps = 19/278 (6%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
+V W + I + +G EA F RM G + + ++ + L C +
Sbjct: 393 SVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHE 452
Query: 95 -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
+NV V AL+ MY K R DLA VFD + + W A++ G + E+
Sbjct: 453 LLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSED 512
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
A+ F MQ+ V+PD T++S++ A++ W+H Y + +V V L+D
Sbjct: 513 AVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALID 572
Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
+Y++ G + AR +F R +++WN++I G+ +G A+E F M+ +E +
Sbjct: 573 MYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETT 632
Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303
F L+ACSHAGL+++G +YF MK+ Y + P +EH+G
Sbjct: 633 FLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYG 670
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 121/239 (50%), Gaps = 22/239 (9%)
Query: 75 GTNPSHITFVTLLSGCA---DFP--------------SNNVMVSTALLDMYAKFGRMDLA 117
G+ P TF +LL CA D S + +TAL +MYAK R A
Sbjct: 220 GSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDA 279
Query: 118 TVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYF-RVMQISGVEPDYLTIISVLNVCAN 174
VFD M D W AL+ G+ + E A+ R+ + G PD +T++SVL CA+
Sbjct: 280 RRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACAD 339
Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
+ LG +H + + F + V V ++DVY + G ++ AR+VF M R VSWN++
Sbjct: 340 AQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAM 399
Query: 235 IVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292
I G+A NG EAL F M +GV TD VS AL AC G +++G + +++ +I
Sbjct: 400 IKGYAENGDATEALALFKRMVGEGVDVTD-VSVLAALHACGELGFLDEGRRVHELLVRI 457
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 22/215 (10%)
Query: 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP--------- 94
T V W + I ++G +A F+RM+L P T V+++ AD
Sbjct: 493 TRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIH 552
Query: 95 --------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
+V V TAL+DMYAK GR+ +A +F+ R W A+++G+ +
Sbjct: 553 GYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGK 612
Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF--KDNVRVCNT 202
A+E F M+ SG P+ T +SVL+ C++ + G + K+D+ + + T
Sbjct: 613 VAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSM-KEDYGLEPGMEHYGT 671
Query: 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVG 237
++D+ R G + A Q+M +S ++G
Sbjct: 672 MVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLG 706
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 150/288 (52%), Gaps = 28/288 (9%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD------------- 92
V WT I+ + + EA F M +G + +T V L CA
Sbjct: 174 VAWTCLINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHER 233
Query: 93 ----------FPSN-NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVK 139
F SN NV+++TA+++MYAK G +++A +F+ M R W ++N + +
Sbjct: 234 VCKAGYDPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQ 293
Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
+ + EAL F M +G PD T +SVL+VCA L +G +H Y+ K + ++ +
Sbjct: 294 YERYNEALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIAL 353
Query: 200 CNTLMDVYSRFGCIEFARQVFQR-MHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK-G 257
L+D+Y++ G + A+++F + K+ +V W S+I A++G EAL F +MQ+
Sbjct: 354 ATALLDMYAKNGELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDS 413
Query: 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
D +++ G L ACSH GL+E+ + F++M K Y + P+ EH+ C+
Sbjct: 414 SLVPDHITYIGVLFACSHVGLVEEAQKQFNLMTKSYGILPEKEHYSCM 461
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 26/241 (10%)
Query: 68 FTRMRLYGTNPSHITFVTLLSGCA---DFPSN--------------NVMVSTALLDMYAK 110
+ +M G +P H TF +L C+ D S NV V+T LL+MY +
Sbjct: 95 YKQMLQNGYSPDHFTFPFVLKACSFIYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVE 154
Query: 111 FGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
M+ VFD + + WT L+NG+V D EALE F+ M GVE + +T+++
Sbjct: 155 CKNMESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALEVFKEMGRWGVEANEVTMVNA 214
Query: 169 LNVCANVRTLGIGLWMHRYVPKQDF-------KDNVRVCNTLMDVYSRFGCIEFARQVFQ 221
L CA R + G W+H V K + NV + ++++Y++ G + AR++F
Sbjct: 215 LIACARCRDVDTGRWVHERVCKAGYDPFVFASNSNVILATAIVEMYAKCGWLNVARELFN 274
Query: 222 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281
+M +R +V+WN +I + EAL F M F D+ +F L+ C+ ++
Sbjct: 275 KMPERNIVAWNCMINAYNQYERYNEALGLFFYMLANGFCPDKATFLSVLSVCARRCVLAL 334
Query: 282 G 282
G
Sbjct: 335 G 335
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 77/153 (50%)
Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189
+ +++ G+ K + +L ++ M +G PD+ T VL C+ + G +H +
Sbjct: 75 FNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFIYDQVSGKCVHSCIL 134
Query: 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 249
K F+ NV V L+++Y +E +VF ++ K +V+W +I G+ +N EALE
Sbjct: 135 KSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALE 194
Query: 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282
F M + + +EV+ AL AC+ ++ G
Sbjct: 195 VFKEMGRWGVEANEVTMVNALIACARCRDVDTG 227
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 127/212 (59%), Gaps = 2/212 (0%)
Query: 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
NV+ T+++ YA+ G +++A +FD M G + W ++++ +++ + EAL+ F M
Sbjct: 325 KNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKM 384
Query: 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
+ S V PD T++S+L C+ + L +G +H Y+ V + N+L+D+Y++ G +
Sbjct: 385 RNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPV 444
Query: 214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
A +F M + LVSWN II A++G EA++ F MQ DE++ TG L+AC
Sbjct: 445 VTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSAC 504
Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
SH+GL++ GL YFD M IYRV +IEH+ C+
Sbjct: 505 SHSGLVDMGLYYFDRMGVIYRVXREIEHYACM 536
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 26/229 (11%)
Query: 73 LYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTA 132
L+G +T L+S CA + ++ + + D + + + +
Sbjct: 139 LHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKF--------------MYNS 184
Query: 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
L+ G+ D +A+ FR M SG+ P+ T+ VL C + +H K
Sbjct: 185 LIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLG 244
Query: 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI--IVGFAVNGFVGEALEY 250
V V N L+ VY G I AR++F + +TLVSWNS+ I G ++ V AL
Sbjct: 245 IGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVRNALXD 304
Query: 251 F-----NLMQ-KGVF-KTDE---VSFTGALTACSHAGLIEDGLQYFDIM 289
NL + +F +T E VS+T ++A + G IE Q FD M
Sbjct: 305 MYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQM 353
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 19/158 (12%)
Query: 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF----------- 93
V W S IS + R G EA F +MR P T V++L+ C+
Sbjct: 358 VVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHN 417
Query: 94 ------PSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
+ V + +L+DMYAK G + A +F M G + W ++ E
Sbjct: 418 YILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLE 477
Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183
A++ F MQ G PD +T+ +L+ C++ + +GL+
Sbjct: 478 AIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLY 515
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALL 105
V W I GC LEA F M+ GT P IT LLS C+ + L+
Sbjct: 460 VSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACS---------HSGLV 510
Query: 106 DM-YAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT 164
DM F RM V++ V R + + +++ + EA+E M + +PD +
Sbjct: 511 DMGLYYFDRMG---VIYRVXREIEHYACMVDLLGRGGLLGEAIELIGRMPM---KPDVVV 564
Query: 165 IISVLNVC 172
++L C
Sbjct: 565 WGALLGAC 572
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,562,963,852
Number of Sequences: 23463169
Number of extensions: 173649414
Number of successful extensions: 578558
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6432
Number of HSP's successfully gapped in prelim test: 3037
Number of HSP's that attempted gapping in prelim test: 489476
Number of HSP's gapped (non-prelim): 42145
length of query: 305
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 163
effective length of database: 9,027,425,369
effective search space: 1471470335147
effective search space used: 1471470335147
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 76 (33.9 bits)