Query 036263
Match_columns 305
No_of_seqs 332 out of 1873
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 10:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.3E-50 2.7E-55 370.1 28.6 272 34-305 178-468 (697)
2 PLN03218 maturation of RBCL 1; 100.0 2.6E-49 5.6E-54 365.9 26.4 285 19-305 482-795 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 1.5E-47 3.2E-52 354.3 29.4 267 38-305 465-760 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 3.5E-47 7.7E-52 354.9 27.7 272 34-305 242-631 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 8.4E-47 1.8E-51 352.4 27.8 272 33-305 140-430 (857)
6 PLN03081 pentatricopeptide (PP 100.0 5E-43 1.1E-47 320.2 29.8 262 43-305 85-366 (697)
7 PRK11788 tetratricopeptide rep 99.8 8.4E-18 1.8E-22 144.6 26.9 253 44-300 68-354 (389)
8 PRK11788 tetratricopeptide rep 99.8 9.2E-17 2E-21 138.2 25.0 244 52-303 42-319 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.7 9.7E-15 2.1E-19 138.3 29.6 242 43-290 599-864 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.7 2.7E-14 5.7E-19 135.3 29.6 242 45-290 533-797 (899)
11 PF13041 PPR_2: PPR repeat fam 99.6 6.5E-15 1.4E-19 86.9 6.4 50 43-92 1-50 (50)
12 KOG4422 Uncharacterized conser 99.6 9.8E-13 2.1E-17 107.5 21.0 235 42-294 204-463 (625)
13 PRK15174 Vi polysaccharide exp 99.6 1.1E-11 2.3E-16 112.9 28.2 152 135-290 220-379 (656)
14 PRK15174 Vi polysaccharide exp 99.5 2E-11 4.4E-16 111.2 29.2 239 47-290 78-345 (656)
15 PF13041 PPR_2: PPR repeat fam 99.5 3.8E-14 8.2E-19 83.6 6.7 50 226-275 1-50 (50)
16 TIGR00990 3a0801s09 mitochondr 99.5 5E-11 1.1E-15 108.5 26.7 223 45-290 331-569 (615)
17 KOG4422 Uncharacterized conser 99.5 1.1E-10 2.4E-15 95.8 25.5 253 41-294 269-591 (625)
18 KOG4318 Bicoid mRNA stability 99.5 4E-12 8.7E-17 112.3 18.4 258 29-303 9-275 (1088)
19 KOG4626 O-linked N-acetylgluco 99.5 1.4E-11 2.9E-16 105.4 19.9 49 45-95 116-165 (966)
20 PF13429 TPR_15: Tetratricopep 99.5 9.9E-13 2.1E-17 107.9 12.7 223 46-290 45-275 (280)
21 TIGR00990 3a0801s09 mitochondr 99.4 3.6E-10 7.8E-15 102.9 29.1 156 131-290 335-494 (615)
22 TIGR02521 type_IV_pilW type IV 99.4 3.1E-10 6.7E-15 90.1 23.8 191 98-290 31-230 (234)
23 PRK11447 cellulose synthase su 99.4 5.7E-10 1.2E-14 108.3 29.6 244 48-299 464-747 (1157)
24 KOG4626 O-linked N-acetylgluco 99.4 2.5E-11 5.3E-16 103.8 17.0 244 46-299 219-489 (966)
25 COG2956 Predicted N-acetylgluc 99.4 2.7E-10 5.9E-15 90.3 20.2 214 57-290 47-276 (389)
26 PRK09782 bacteriophage N4 rece 99.4 1.6E-09 3.4E-14 101.9 28.4 221 44-290 476-704 (987)
27 KOG1126 DNA-binding cell divis 99.4 1.8E-10 3.8E-15 99.3 19.6 244 46-299 354-624 (638)
28 PRK10747 putative protoheme IX 99.3 1.2E-09 2.6E-14 94.0 23.8 234 48-290 121-388 (398)
29 TIGR02521 type_IV_pilW type IV 99.3 2.5E-09 5.3E-14 84.9 22.6 194 44-257 30-232 (234)
30 PRK11447 cellulose synthase su 99.3 8.5E-09 1.8E-13 100.3 28.6 242 43-290 383-698 (1157)
31 KOG1840 Kinesin light chain [C 99.3 5.6E-09 1.2E-13 90.4 23.6 230 47-290 201-477 (508)
32 PRK09782 bacteriophage N4 rece 99.3 7.1E-09 1.5E-13 97.5 25.8 223 43-290 507-738 (987)
33 PF13429 TPR_15: Tetratricopep 99.3 5.4E-11 1.2E-15 97.6 10.6 189 44-256 77-276 (280)
34 PRK10747 putative protoheme IX 99.2 7E-09 1.5E-13 89.3 23.8 198 52-256 160-389 (398)
35 PRK10049 pgaA outer membrane p 99.2 2.9E-08 6.2E-13 92.5 29.5 151 138-290 248-420 (765)
36 KOG1155 Anaphase-promoting com 99.2 1.1E-08 2.3E-13 85.1 20.9 234 53-289 270-533 (559)
37 PRK12370 invasion protein regu 99.2 3.4E-08 7.5E-13 88.7 25.3 231 43-293 254-503 (553)
38 COG3071 HemY Uncharacterized e 99.2 9.9E-08 2.1E-12 78.0 25.1 234 44-299 117-396 (400)
39 PRK10049 pgaA outer membrane p 99.2 1.1E-07 2.3E-12 88.7 28.5 243 44-290 48-386 (765)
40 PRK14574 hmsH outer membrane p 99.1 2.1E-07 4.5E-12 86.2 28.0 155 135-290 300-477 (822)
41 TIGR00540 hemY_coli hemY prote 99.1 3.5E-08 7.7E-13 85.3 21.8 237 50-290 123-397 (409)
42 KOG1173 Anaphase-promoting com 99.1 6.2E-08 1.3E-12 82.5 21.9 251 43-300 242-523 (611)
43 TIGR00540 hemY_coli hemY prote 99.1 1.3E-07 2.8E-12 81.9 23.7 201 51-256 159-398 (409)
44 COG2956 Predicted N-acetylgluc 99.1 1.7E-07 3.6E-12 74.8 21.8 193 49-257 73-278 (389)
45 KOG2003 TPR repeat-containing 99.1 3.1E-08 6.8E-13 82.3 18.1 199 57-278 502-709 (840)
46 PRK12370 invasion protein regu 99.0 1.2E-07 2.6E-12 85.2 23.1 206 59-290 318-533 (553)
47 KOG1126 DNA-binding cell divis 99.0 6.7E-09 1.5E-13 89.8 13.9 193 100-299 355-590 (638)
48 KOG1155 Anaphase-promoting com 99.0 9.4E-08 2E-12 79.6 20.0 217 53-291 235-494 (559)
49 PRK14574 hmsH outer membrane p 99.0 1.6E-06 3.5E-11 80.4 28.1 186 103-290 297-511 (822)
50 PF12854 PPR_1: PPR repeat 99.0 1.1E-09 2.3E-14 58.2 4.4 33 192-224 2-34 (34)
51 KOG1129 TPR repeat-containing 99.0 7.2E-08 1.6E-12 77.0 16.1 226 48-299 226-462 (478)
52 COG3063 PilF Tfp pilus assembl 98.9 1.2E-06 2.7E-11 66.7 21.3 200 100-302 37-246 (250)
53 KOG2003 TPR repeat-containing 98.9 1.9E-07 4.2E-12 77.7 18.3 236 54-293 428-690 (840)
54 PRK11189 lipoprotein NlpI; Pro 98.9 1.5E-06 3.2E-11 71.8 23.3 195 46-267 65-274 (296)
55 KOG1840 Kinesin light chain [C 98.9 2.9E-07 6.3E-12 80.0 19.3 202 40-255 235-477 (508)
56 COG3071 HemY Uncharacterized e 98.9 2.3E-06 4.9E-11 70.3 23.1 205 41-261 183-394 (400)
57 PF12854 PPR_1: PPR repeat 98.9 1.7E-09 3.8E-14 57.4 3.6 34 257-290 1-34 (34)
58 PRK11189 lipoprotein NlpI; Pro 98.9 7.1E-07 1.5E-11 73.7 19.7 185 100-290 66-263 (296)
59 KOG1129 TPR repeat-containing 98.8 2.7E-07 5.9E-12 73.8 14.3 196 42-257 253-458 (478)
60 COG3063 PilF Tfp pilus assembl 98.8 1.1E-05 2.4E-10 61.7 21.2 200 46-267 36-244 (250)
61 KOG4318 Bicoid mRNA stability 98.8 4.2E-07 9.2E-12 81.4 15.3 203 66-303 11-243 (1088)
62 PF12569 NARP1: NMDA receptor- 98.8 1.5E-05 3.3E-10 70.1 24.9 247 43-292 35-334 (517)
63 KOG0547 Translocase of outer m 98.7 2.8E-06 6E-11 71.6 18.3 184 101-290 363-564 (606)
64 PF04733 Coatomer_E: Coatomer 98.7 1.6E-06 3.5E-11 70.9 16.5 148 106-257 110-265 (290)
65 KOG2076 RNA polymerase III tra 98.7 4.5E-05 9.7E-10 69.0 25.6 245 45-290 139-476 (895)
66 KOG1070 rRNA processing protei 98.7 3.8E-06 8.3E-11 78.8 19.3 210 79-298 1443-1668(1710)
67 KOG2002 TPR-containing nuclear 98.7 4.4E-06 9.5E-11 75.8 18.9 249 41-290 448-743 (1018)
68 TIGR00756 PPR pentatricopeptid 98.7 5E-08 1.1E-12 52.4 4.2 35 46-80 1-35 (35)
69 TIGR03302 OM_YfiO outer membra 98.6 1.5E-05 3.1E-10 63.7 19.8 59 233-291 171-231 (235)
70 PF13812 PPR_3: Pentatricopept 98.6 7.1E-08 1.5E-12 51.5 4.2 34 45-78 1-34 (34)
71 PF12569 NARP1: NMDA receptor- 98.6 0.00011 2.4E-09 64.8 25.7 220 52-295 11-293 (517)
72 KOG1070 rRNA processing protei 98.6 4.1E-05 8.8E-10 72.3 23.6 225 44-285 1457-1693(1710)
73 TIGR00756 PPR pentatricopeptid 98.6 1E-07 2.2E-12 51.2 4.4 33 230-262 2-34 (35)
74 KOG2076 RNA polymerase III tra 98.6 7.3E-05 1.6E-09 67.6 23.6 183 105-290 287-510 (895)
75 PF13812 PPR_3: Pentatricopept 98.6 1.4E-07 2.9E-12 50.4 4.3 33 229-261 2-34 (34)
76 PF04733 Coatomer_E: Coatomer 98.5 4.6E-06 1E-10 68.2 14.2 147 135-290 110-263 (290)
77 KOG2002 TPR-containing nuclear 98.5 6.6E-05 1.4E-09 68.5 22.3 191 96-290 268-479 (1018)
78 KOG0495 HAT repeat protein [RN 98.5 0.00018 4E-09 63.2 24.0 185 99-287 517-709 (913)
79 KOG0495 HAT repeat protein [RN 98.5 0.0002 4.4E-09 62.9 23.9 242 45-290 584-878 (913)
80 KOG1173 Anaphase-promoting com 98.5 3.5E-05 7.7E-10 66.2 19.0 209 44-275 311-534 (611)
81 PRK10370 formate-dependent nit 98.5 4.6E-05 1E-09 58.9 17.9 154 104-266 22-181 (198)
82 PRK15179 Vi polysaccharide bio 98.5 6.9E-05 1.5E-09 68.5 21.5 128 127-257 86-217 (694)
83 KOG1915 Cell cycle control pro 98.5 0.00045 9.8E-09 58.6 24.2 98 193-290 433-534 (677)
84 KOG1128 Uncharacterized conser 98.4 1.9E-05 4.2E-10 69.7 16.6 208 50-293 403-617 (777)
85 cd05804 StaR_like StaR_like; a 98.4 0.00041 9E-09 59.0 24.8 236 53-290 51-334 (355)
86 KOG2047 mRNA splicing factor [ 98.4 0.00019 4.2E-09 62.9 22.0 116 173-290 488-613 (835)
87 cd05804 StaR_like StaR_like; a 98.4 0.00015 3.3E-09 61.7 20.8 89 167-256 119-214 (355)
88 KOG1174 Anaphase-promoting com 98.4 0.00032 6.9E-09 58.5 20.9 224 43-290 230-498 (564)
89 PRK10370 formate-dependent nit 98.4 6.1E-05 1.3E-09 58.2 15.9 143 134-290 23-171 (198)
90 PRK14720 transcript cleavage f 98.4 0.00017 3.7E-09 67.1 21.2 218 37-274 23-268 (906)
91 KOG0547 Translocase of outer m 98.3 6.9E-05 1.5E-09 63.5 16.6 201 48-274 363-578 (606)
92 PF01535 PPR: PPR repeat; Int 98.3 6.9E-07 1.5E-11 46.4 3.3 31 46-76 1-31 (31)
93 TIGR03302 OM_YfiO outer membra 98.3 0.0001 2.2E-09 58.8 17.1 180 42-257 30-232 (235)
94 PRK15179 Vi polysaccharide bio 98.3 0.00034 7.4E-09 64.1 21.5 181 101-290 31-215 (694)
95 COG5010 TadD Flp pilus assembl 98.3 0.0003 6.5E-09 55.0 18.0 150 134-286 73-225 (257)
96 PRK15359 type III secretion sy 98.3 3.4E-05 7.3E-10 56.4 12.1 109 148-263 14-125 (144)
97 PLN02789 farnesyltranstransfer 98.3 0.0018 3.9E-08 53.9 23.3 222 46-290 38-300 (320)
98 PF10037 MRP-S27: Mitochondria 98.2 2.1E-05 4.6E-10 67.1 12.2 121 90-210 58-186 (429)
99 PF01535 PPR: PPR repeat; Int 98.2 1.7E-06 3.6E-11 44.9 3.5 30 230-259 2-31 (31)
100 KOG0985 Vesicle coat protein c 98.2 0.00015 3.2E-09 66.7 17.4 220 51-289 1054-1305(1666)
101 TIGR02552 LcrH_SycD type III s 98.2 6.5E-05 1.4E-09 54.2 12.8 106 162-270 17-125 (135)
102 KOG1125 TPR repeat-containing 98.2 9.6E-05 2.1E-09 63.8 15.3 179 108-290 295-525 (579)
103 COG5010 TadD Flp pilus assembl 98.2 0.00014 3.1E-09 56.8 14.4 149 106-256 74-230 (257)
104 KOG1174 Anaphase-promoting com 98.2 0.00096 2.1E-08 55.7 19.6 156 96-253 230-393 (564)
105 TIGR02552 LcrH_SycD type III s 98.2 7.3E-05 1.6E-09 54.0 12.0 112 184-300 5-119 (135)
106 PRK15359 type III secretion sy 98.2 4.9E-05 1.1E-09 55.6 11.0 110 182-299 13-125 (144)
107 PF08579 RPM2: Mitochondrial r 98.1 3.2E-05 6.9E-10 52.3 8.7 79 131-209 29-116 (120)
108 KOG2376 Signal recognition par 98.1 0.00054 1.2E-08 59.6 18.1 211 51-290 18-251 (652)
109 KOG3081 Vesicle coat complex C 98.1 0.0011 2.4E-08 52.1 18.2 148 105-256 115-270 (299)
110 COG4783 Putative Zn-dependent 98.1 0.0017 3.7E-08 55.3 20.7 181 39-257 268-454 (484)
111 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00014 3E-09 61.8 14.3 120 165-290 172-295 (395)
112 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.0002 4.4E-09 60.8 14.9 125 98-224 169-295 (395)
113 COG4783 Putative Zn-dependent 98.1 0.003 6.5E-08 53.9 21.3 115 137-254 316-434 (484)
114 KOG1914 mRNA cleavage and poly 98.1 0.0056 1.2E-07 53.0 22.6 148 143-292 347-501 (656)
115 PF09976 TPR_21: Tetratricopep 98.1 0.00046 1E-08 50.5 14.6 113 140-253 24-143 (145)
116 PRK14720 transcript cleavage f 98.0 0.00059 1.3E-08 63.6 17.8 180 96-290 29-250 (906)
117 PF09976 TPR_21: Tetratricopep 98.0 0.00035 7.5E-09 51.2 13.5 123 163-289 13-144 (145)
118 KOG3060 Uncharacterized conser 98.0 0.0039 8.4E-08 48.8 19.3 181 58-257 25-220 (289)
119 PRK04841 transcriptional regul 98.0 0.0031 6.6E-08 60.8 23.2 190 101-290 534-758 (903)
120 KOG3785 Uncharacterized conser 98.0 0.0012 2.7E-08 54.0 16.9 190 107-303 294-498 (557)
121 PF08579 RPM2: Mitochondrial r 98.0 0.00019 4.2E-09 48.6 10.3 89 164-275 27-116 (120)
122 PF04840 Vps16_C: Vps16, C-ter 98.0 0.0068 1.5E-07 50.4 21.5 107 163-285 178-284 (319)
123 PF10037 MRP-S27: Mitochondria 98.0 0.00029 6.2E-09 60.3 13.6 120 157-276 61-186 (429)
124 KOG3616 Selective LIM binding 98.0 0.00089 1.9E-08 59.9 16.8 160 110-288 744-907 (1636)
125 KOG0624 dsRNA-activated protei 98.0 0.006 1.3E-07 50.0 20.0 170 49-224 42-250 (504)
126 PRK10866 outer membrane biogen 97.9 0.0035 7.6E-08 50.2 18.7 58 233-290 180-239 (243)
127 KOG1128 Uncharacterized conser 97.9 0.0012 2.7E-08 58.8 16.7 184 96-294 396-583 (777)
128 KOG1125 TPR repeat-containing 97.9 0.0013 2.8E-08 57.1 16.3 229 54-285 294-564 (579)
129 PF06239 ECSIT: Evolutionarily 97.9 0.00032 6.9E-09 53.6 11.4 98 127-224 47-166 (228)
130 KOG3060 Uncharacterized conser 97.9 0.0066 1.4E-07 47.6 18.3 174 112-290 26-218 (289)
131 KOG2047 mRNA splicing factor [ 97.9 0.016 3.6E-07 51.3 24.3 26 130-155 251-276 (835)
132 KOG4162 Predicted calmodulin-b 97.8 0.0059 1.3E-07 55.0 19.7 200 96-295 321-545 (799)
133 KOG4340 Uncharacterized conser 97.8 0.004 8.8E-08 49.9 16.8 238 44-287 43-334 (459)
134 PF05843 Suf: Suppressor of fo 97.8 0.00062 1.3E-08 55.8 12.9 139 129-271 3-148 (280)
135 PRK04841 transcriptional regul 97.8 0.02 4.3E-07 55.3 24.7 224 53-290 460-718 (903)
136 cd00189 TPR Tetratricopeptide 97.8 0.00059 1.3E-08 45.0 10.5 90 200-290 3-95 (100)
137 KOG3616 Selective LIM binding 97.8 0.0031 6.7E-08 56.7 16.8 131 138-288 743-875 (1636)
138 KOG1915 Cell cycle control pro 97.8 0.02 4.3E-07 49.1 23.3 158 130-290 325-498 (677)
139 PF06239 ECSIT: Evolutionarily 97.8 0.00059 1.3E-08 52.2 10.6 105 159-278 44-153 (228)
140 PRK10153 DNA-binding transcrip 97.7 0.0032 6.9E-08 56.0 16.3 139 158-302 333-489 (517)
141 PRK02603 photosystem I assembl 97.7 0.0019 4E-08 48.8 13.0 88 129-217 37-126 (172)
142 KOG4340 Uncharacterized conser 97.7 0.0026 5.6E-08 51.0 13.8 190 102-299 14-213 (459)
143 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.001 2.2E-08 46.6 10.8 93 165-257 5-105 (119)
144 cd00189 TPR Tetratricopeptide 97.7 0.0007 1.5E-08 44.7 9.3 90 131-222 4-93 (100)
145 PLN03088 SGT1, suppressor of 97.7 0.0011 2.3E-08 56.4 12.1 84 172-256 12-98 (356)
146 PF14938 SNAP: Soluble NSF att 97.7 0.0062 1.4E-07 50.0 16.3 117 104-223 41-181 (282)
147 KOG3785 Uncharacterized conser 97.7 0.0017 3.7E-08 53.3 12.4 192 50-258 290-491 (557)
148 PF12895 Apc3: Anaphase-promot 97.6 0.0004 8.6E-09 45.5 7.5 20 234-253 31-50 (84)
149 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0027 5.8E-08 44.4 12.3 91 200-290 5-103 (119)
150 PF12895 Apc3: Anaphase-promot 97.6 0.00014 3E-09 47.7 5.2 78 176-253 3-83 (84)
151 KOG3081 Vesicle coat complex C 97.6 0.021 4.4E-07 45.2 20.4 147 134-290 115-269 (299)
152 PF05843 Suf: Suppressor of fo 97.6 0.0022 4.8E-08 52.5 13.2 123 100-224 3-134 (280)
153 KOG1156 N-terminal acetyltrans 97.6 0.051 1.1E-06 48.3 24.2 235 44-294 142-469 (700)
154 PF12688 TPR_5: Tetratrico pep 97.6 0.0062 1.4E-07 42.7 12.8 107 133-239 7-117 (120)
155 KOG0985 Vesicle coat protein c 97.5 0.029 6.2E-07 52.5 19.9 192 43-251 1131-1335(1666)
156 CHL00033 ycf3 photosystem I as 97.5 0.0038 8.2E-08 47.0 12.5 79 129-208 37-117 (168)
157 KOG4162 Predicted calmodulin-b 97.5 0.035 7.7E-07 50.2 19.4 124 165-290 653-781 (799)
158 PLN02789 farnesyltranstransfer 97.5 0.046 9.9E-07 45.7 19.3 180 108-290 47-248 (320)
159 KOG3617 WD40 and TPR repeat-co 97.4 0.01 2.2E-07 54.1 15.6 219 44-290 756-994 (1416)
160 KOG2796 Uncharacterized conser 97.4 0.04 8.6E-07 43.7 16.5 141 127-269 177-325 (366)
161 PRK02603 photosystem I assembl 97.4 0.012 2.5E-07 44.5 13.7 82 162-243 35-121 (172)
162 PRK15363 pathogenicity island 97.4 0.0084 1.8E-07 43.8 11.9 93 164-257 37-132 (157)
163 PLN03088 SGT1, suppressor of 97.4 0.0053 1.2E-07 52.2 12.7 88 135-225 10-98 (356)
164 PF03704 BTAD: Bacterial trans 97.4 0.0056 1.2E-07 44.8 11.2 72 229-301 63-138 (146)
165 CHL00033 ycf3 photosystem I as 97.3 0.0037 8E-08 47.0 10.4 92 162-253 35-138 (168)
166 PF14559 TPR_19: Tetratricopep 97.3 0.0013 2.9E-08 40.9 6.5 49 175-224 4-52 (68)
167 PF14938 SNAP: Soluble NSF att 97.3 0.015 3.1E-07 47.9 14.1 27 45-71 55-81 (282)
168 KOG2053 Mitochondrial inherita 97.3 0.15 3.3E-06 47.1 21.4 213 56-290 20-253 (932)
169 KOG0553 TPR repeat-containing 97.3 0.0041 8.9E-08 49.9 10.0 85 137-224 91-176 (304)
170 KOG3617 WD40 and TPR repeat-co 97.2 0.016 3.5E-07 52.9 14.4 184 97-290 725-939 (1416)
171 PF13432 TPR_16: Tetratricopep 97.2 0.0016 3.6E-08 40.1 6.1 55 235-290 4-58 (65)
172 PRK15363 pathogenicity island 97.2 0.019 4.2E-07 42.0 12.0 100 197-297 35-137 (157)
173 PF13525 YfiO: Outer membrane 97.2 0.038 8.3E-07 42.9 14.5 159 108-283 15-198 (203)
174 PF13281 DUF4071: Domain of un 97.1 0.1 2.2E-06 44.2 17.5 157 99-257 142-334 (374)
175 KOG1156 N-terminal acetyltrans 97.1 0.18 3.9E-06 45.0 21.6 131 159-291 366-510 (700)
176 PF14559 TPR_19: Tetratricopep 97.1 0.0025 5.4E-08 39.7 5.9 60 208-269 2-64 (68)
177 PRK10153 DNA-binding transcrip 97.1 0.054 1.2E-06 48.4 16.2 137 127-267 337-490 (517)
178 PF03704 BTAD: Bacterial trans 97.1 0.0098 2.1E-07 43.5 9.9 59 165-224 65-123 (146)
179 KOG1538 Uncharacterized conser 97.0 0.22 4.9E-06 44.6 19.8 223 44-290 597-844 (1081)
180 COG4700 Uncharacterized protei 97.0 0.088 1.9E-06 39.6 15.8 98 159-256 86-188 (251)
181 PF13432 TPR_16: Tetratricopep 97.0 0.0037 8.1E-08 38.5 6.2 53 204-256 4-59 (65)
182 PF12688 TPR_5: Tetratrico pep 97.0 0.043 9.3E-07 38.5 11.9 101 169-273 8-116 (120)
183 KOG2053 Mitochondrial inherita 97.0 0.075 1.6E-06 49.1 16.1 174 110-287 21-214 (932)
184 PF04840 Vps16_C: Vps16, C-ter 96.9 0.18 3.9E-06 42.1 20.5 86 198-289 178-263 (319)
185 KOG0553 TPR repeat-containing 96.9 0.0079 1.7E-07 48.3 8.7 100 171-273 90-192 (304)
186 KOG0548 Molecular co-chaperone 96.9 0.18 4E-06 43.9 17.2 205 48-275 227-471 (539)
187 PF07079 DUF1347: Protein of u 96.9 0.25 5.5E-06 42.4 19.7 66 230-303 462-529 (549)
188 PF13414 TPR_11: TPR repeat; P 96.8 0.0071 1.5E-07 37.7 6.6 62 228-290 3-65 (69)
189 PF12921 ATP13: Mitochondrial 96.8 0.0076 1.7E-07 42.7 7.3 79 196-274 1-99 (126)
190 KOG1127 TPR repeat-containing 96.8 0.067 1.4E-06 50.1 14.6 51 173-224 573-623 (1238)
191 PF13424 TPR_12: Tetratricopep 96.8 0.0067 1.4E-07 38.9 6.4 61 230-290 7-73 (78)
192 PF12921 ATP13: Mitochondrial 96.8 0.034 7.3E-07 39.4 10.1 82 161-242 1-102 (126)
193 KOG2376 Signal recognition par 96.7 0.37 8.1E-06 42.7 21.1 232 51-289 230-517 (652)
194 PF13414 TPR_11: TPR repeat; P 96.7 0.0055 1.2E-07 38.2 5.4 59 198-256 4-66 (69)
195 KOG1914 mRNA cleavage and poly 96.7 0.32 7E-06 42.7 17.2 142 114-257 347-501 (656)
196 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.33 7.2E-06 41.7 17.4 126 163-290 398-529 (660)
197 KOG2796 Uncharacterized conser 96.7 0.15 3.3E-06 40.5 13.9 135 164-302 179-322 (366)
198 PRK10803 tol-pal system protei 96.6 0.049 1.1E-06 44.1 11.5 93 198-290 144-244 (263)
199 PF04053 Coatomer_WDAD: Coatom 96.6 0.041 8.9E-07 48.0 11.6 43 110-152 330-372 (443)
200 KOG3941 Intermediate in Toll s 96.6 0.1 2.2E-06 41.9 12.4 128 31-189 51-186 (406)
201 COG4700 Uncharacterized protei 96.6 0.21 4.5E-06 37.6 14.6 138 114-251 76-216 (251)
202 PF13424 TPR_12: Tetratricopep 96.6 0.0084 1.8E-07 38.4 5.6 60 130-189 8-73 (78)
203 PF10300 DUF3808: Protein of u 96.4 0.47 1E-05 42.1 17.3 161 127-290 188-374 (468)
204 KOG1127 TPR repeat-containing 96.4 0.21 4.6E-06 47.0 15.0 126 96-224 524-657 (1238)
205 PF13371 TPR_9: Tetratricopept 96.3 0.022 4.8E-07 35.8 6.2 51 206-256 4-57 (73)
206 KOG2114 Vacuolar assembly/sort 96.3 0.45 9.6E-06 44.0 16.0 183 45-254 334-516 (933)
207 PF04053 Coatomer_WDAD: Coatom 96.3 0.12 2.6E-06 45.2 12.4 150 109-288 272-427 (443)
208 KOG1130 Predicted G-alpha GTPa 96.2 0.045 9.8E-07 46.2 8.9 128 163-290 196-342 (639)
209 PRK10803 tol-pal system protei 96.2 0.13 2.8E-06 41.6 11.4 99 162-264 143-251 (263)
210 KOG3941 Intermediate in Toll s 96.1 0.065 1.4E-06 43.0 9.2 97 128-224 68-186 (406)
211 PF13371 TPR_9: Tetratricopept 96.1 0.049 1.1E-06 34.2 7.1 54 236-290 3-56 (73)
212 COG4235 Cytochrome c biogenesi 96.1 0.16 3.4E-06 41.1 11.1 96 161-257 155-256 (287)
213 PRK10866 outer membrane biogen 96.0 0.6 1.3E-05 37.4 18.9 189 44-255 31-239 (243)
214 KOG2280 Vacuolar assembly/sort 96.0 1.3 2.8E-05 40.6 17.7 27 44-70 506-532 (829)
215 smart00299 CLH Clathrin heavy 95.9 0.4 8.6E-06 34.6 14.8 127 130-275 10-137 (140)
216 COG4235 Cytochrome c biogenesi 95.9 0.5 1.1E-05 38.4 13.2 96 194-290 153-254 (287)
217 PF13170 DUF4003: Protein of u 95.8 0.52 1.1E-05 39.0 13.6 147 44-204 59-224 (297)
218 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.19 4E-06 43.4 11.2 62 196-257 74-141 (453)
219 KOG2041 WD40 repeat protein [G 95.8 0.46 1E-05 43.1 13.7 56 193-253 848-903 (1189)
220 smart00299 CLH Clathrin heavy 95.8 0.49 1.1E-05 34.2 13.2 130 46-209 8-137 (140)
221 PF10300 DUF3808: Protein of u 95.7 0.74 1.6E-05 40.9 15.1 154 99-254 189-373 (468)
222 KOG0543 FKBP-type peptidyl-pro 95.7 0.18 4E-06 42.5 10.6 94 162-256 257-354 (397)
223 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.2 4.3E-06 43.3 10.9 61 129-191 77-141 (453)
224 PF07035 Mic1: Colon cancer-as 95.7 0.6 1.3E-05 34.8 13.5 133 146-290 13-147 (167)
225 PF13170 DUF4003: Protein of u 95.6 0.26 5.6E-06 40.7 11.1 145 143-289 78-243 (297)
226 COG3898 Uncharacterized membra 95.6 1.2 2.6E-05 37.7 20.1 210 56-290 131-390 (531)
227 KOG2114 Vacuolar assembly/sort 95.6 1.1 2.4E-05 41.5 15.6 226 44-289 282-516 (933)
228 KOG0624 dsRNA-activated protei 95.6 1.2 2.5E-05 37.2 18.4 154 106-264 80-257 (504)
229 KOG0548 Molecular co-chaperone 95.5 0.69 1.5E-05 40.5 13.3 92 134-227 365-456 (539)
230 PRK15331 chaperone protein Sic 95.0 0.48 1E-05 35.0 9.6 84 172-256 47-133 (165)
231 KOG2280 Vacuolar assembly/sort 94.9 3 6.5E-05 38.4 19.0 85 199-289 686-770 (829)
232 KOG2610 Uncharacterized conser 94.9 1.2 2.6E-05 37.0 12.3 53 171-224 184-236 (491)
233 PF09205 DUF1955: Domain of un 94.7 1.1 2.3E-05 31.9 12.5 64 231-296 89-152 (161)
234 KOG1585 Protein required for f 94.5 2 4.3E-05 34.1 14.5 183 103-287 36-251 (308)
235 KOG1538 Uncharacterized conser 94.4 0.84 1.8E-05 41.2 11.1 88 161-257 746-846 (1081)
236 PRK15331 chaperone protein Sic 94.3 0.59 1.3E-05 34.6 8.7 90 134-225 44-133 (165)
237 KOG1920 IkappaB kinase complex 94.2 4.4 9.5E-05 39.4 15.9 125 112-254 894-1025(1265)
238 COG1729 Uncharacterized protei 94.1 0.54 1.2E-05 37.6 8.8 93 47-156 144-244 (262)
239 COG4105 ComL DNA uptake lipopr 94.1 2.4 5.2E-05 33.8 17.4 56 234-290 173-231 (254)
240 PF09205 DUF1955: Domain of un 94.1 1.5 3.2E-05 31.2 10.9 60 132-192 91-150 (161)
241 COG5107 RNA14 Pre-mRNA 3'-end 94.0 3.8 8.2E-05 35.6 16.8 143 127-274 397-546 (660)
242 KOG0543 FKBP-type peptidyl-pro 93.8 1.2 2.7E-05 37.7 10.6 134 134-290 215-353 (397)
243 COG3629 DnrI DNA-binding trans 93.8 0.9 1.9E-05 37.0 9.6 76 197-272 153-236 (280)
244 COG1729 Uncharacterized protei 93.8 1.2 2.6E-05 35.7 10.2 95 198-293 143-245 (262)
245 PF13512 TPR_18: Tetratricopep 93.7 1.9 4.2E-05 31.1 11.0 50 208-257 21-76 (142)
246 PF10602 RPN7: 26S proteasome 93.6 0.81 1.8E-05 34.7 8.7 61 129-189 38-100 (177)
247 KOG2610 Uncharacterized conser 93.5 2.9 6.2E-05 34.9 11.9 150 138-288 114-272 (491)
248 PF00637 Clathrin: Region in C 93.4 0.13 2.8E-06 37.4 4.0 128 133-278 13-140 (143)
249 KOG4570 Uncharacterized conser 93.3 1.1 2.4E-05 36.7 9.2 98 192-290 59-162 (418)
250 PF13176 TPR_7: Tetratricopept 93.2 0.26 5.6E-06 26.1 4.1 23 231-253 2-24 (36)
251 COG3629 DnrI DNA-binding trans 93.2 0.66 1.4E-05 37.7 8.0 72 228-300 153-228 (280)
252 KOG1585 Protein required for f 93.1 3.5 7.6E-05 32.8 11.4 137 104-251 97-250 (308)
253 PF13525 YfiO: Outer membrane 92.9 3.5 7.6E-05 32.0 16.8 169 50-248 10-198 (203)
254 PF10602 RPN7: 26S proteasome 92.5 1.8 3.8E-05 32.9 9.1 62 163-224 37-100 (177)
255 PF00637 Clathrin: Region in C 92.4 0.1 2.2E-06 38.0 2.3 120 167-289 12-135 (143)
256 PF04184 ST7: ST7 protein; In 92.4 7.3 0.00016 34.4 15.4 73 200-272 262-340 (539)
257 PF13176 TPR_7: Tetratricopept 92.3 0.37 8.1E-06 25.4 3.9 26 47-72 1-26 (36)
258 PF08631 SPO22: Meiosis protei 92.2 5.6 0.00012 32.6 24.0 223 55-290 3-273 (278)
259 PF13428 TPR_14: Tetratricopep 92.1 0.59 1.3E-05 25.9 4.7 24 132-155 6-29 (44)
260 PF13428 TPR_14: Tetratricopep 91.9 0.92 2E-05 25.1 5.4 28 230-257 3-30 (44)
261 PF13281 DUF4071: Domain of un 91.8 7.6 0.00017 33.2 17.6 163 128-290 142-332 (374)
262 PF07079 DUF1347: Protein of u 91.7 8.4 0.00018 33.6 18.8 140 55-209 16-179 (549)
263 PF13929 mRNA_stabil: mRNA sta 91.7 6.4 0.00014 32.2 12.9 133 142-274 143-289 (292)
264 PF13431 TPR_17: Tetratricopep 91.6 0.28 6.1E-06 25.6 2.8 24 194-217 10-33 (34)
265 KOG4555 TPR repeat-containing 91.5 3.2 6.9E-05 29.5 8.5 87 171-258 52-145 (175)
266 KOG0276 Vesicle coat complex C 91.5 8.7 0.00019 34.8 13.0 102 108-224 647-748 (794)
267 KOG0276 Vesicle coat complex C 91.3 2.5 5.3E-05 38.0 9.6 96 110-224 598-693 (794)
268 COG4649 Uncharacterized protei 91.3 4.9 0.00011 30.2 10.7 120 138-257 69-196 (221)
269 PF00515 TPR_1: Tetratricopept 91.2 0.66 1.4E-05 23.8 4.1 27 230-256 3-29 (34)
270 PF13762 MNE1: Mitochondrial s 91.0 4.7 0.0001 29.3 10.4 94 188-281 28-133 (145)
271 PF08631 SPO22: Meiosis protei 90.5 8.6 0.00019 31.6 19.9 155 108-264 3-193 (278)
272 PF04184 ST7: ST7 protein; In 90.3 12 0.00027 33.1 17.1 164 50-239 173-342 (539)
273 KOG1941 Acetylcholine receptor 90.1 8 0.00017 32.7 11.0 162 129-290 85-273 (518)
274 cd00923 Cyt_c_Oxidase_Va Cytoc 89.5 2.8 6E-05 27.9 6.5 45 180-224 25-69 (103)
275 PF13374 TPR_10: Tetratricopep 89.4 1.1 2.4E-05 24.1 4.3 25 230-254 4-28 (42)
276 PF02284 COX5A: Cytochrome c o 89.4 1.9 4.1E-05 29.0 5.7 43 248-290 30-72 (108)
277 KOG2297 Predicted translation 89.3 11 0.00024 31.1 14.5 192 43-248 109-341 (412)
278 PF07035 Mic1: Colon cancer-as 88.9 8.1 0.00018 28.9 13.3 121 127-257 29-149 (167)
279 PF02284 COX5A: Cytochrome c o 88.7 5.6 0.00012 26.8 8.0 45 180-224 28-72 (108)
280 PF13374 TPR_10: Tetratricopep 88.7 1.2 2.7E-05 23.9 4.1 29 45-73 2-30 (42)
281 COG3118 Thioredoxin domain-con 88.5 12 0.00027 30.6 12.7 140 136-277 143-286 (304)
282 PF07719 TPR_2: Tetratricopept 88.4 1.5 3.2E-05 22.3 4.1 25 232-256 5-29 (34)
283 TIGR02561 HrpB1_HrpK type III 88.3 8 0.00017 28.2 9.5 61 56-138 21-87 (153)
284 PF00515 TPR_1: Tetratricopept 88.3 1.4 2.9E-05 22.6 3.9 28 46-73 2-29 (34)
285 KOG4570 Uncharacterized conser 87.7 3.5 7.7E-05 34.0 7.3 91 101-192 67-165 (418)
286 PF09613 HrpB1_HrpK: Bacterial 87.2 10 0.00022 28.1 9.5 116 163-283 8-129 (160)
287 PF13929 mRNA_stabil: mRNA sta 87.2 15 0.00033 30.1 13.1 147 74-223 106-264 (292)
288 TIGR01503 MthylAspMut_E methyl 86.8 7.1 0.00015 34.1 9.0 167 113-305 29-217 (480)
289 COG0457 NrfG FOG: TPR repeat [ 86.7 12 0.00026 28.5 20.5 188 100-290 61-263 (291)
290 PF13512 TPR_18: Tetratricopep 86.7 10 0.00022 27.5 9.4 46 110-155 22-75 (142)
291 PF07719 TPR_2: Tetratricopept 86.6 1.6 3.5E-05 22.2 3.5 27 264-290 2-28 (34)
292 PRK11906 transcriptional regul 86.2 23 0.0005 31.2 13.3 34 46-79 252-293 (458)
293 COG3898 Uncharacterized membra 85.8 22 0.00047 30.6 20.1 78 111-190 133-216 (531)
294 PF02259 FAT: FAT domain; Int 85.4 21 0.00046 30.1 16.6 65 226-290 144-211 (352)
295 KOG1586 Protein required for f 85.2 17 0.00037 28.9 11.0 23 238-260 164-186 (288)
296 KOG4555 TPR repeat-containing 84.9 12 0.00026 26.7 8.1 88 135-224 51-142 (175)
297 PF13181 TPR_8: Tetratricopept 84.7 2.1 4.5E-05 21.8 3.4 25 231-255 4-28 (34)
298 COG3118 Thioredoxin domain-con 84.7 21 0.00045 29.4 15.1 117 170-290 142-263 (304)
299 PF07721 TPR_4: Tetratricopept 84.7 2.2 4.8E-05 20.5 3.2 18 203-220 7-24 (26)
300 KOG1258 mRNA processing protei 84.7 31 0.00066 31.3 18.4 178 96-277 295-489 (577)
301 COG1747 Uncharacterized N-term 84.7 29 0.00063 31.0 17.4 156 128-290 67-232 (711)
302 PF04097 Nic96: Nup93/Nic96; 84.6 27 0.0006 32.4 12.5 218 52-289 265-531 (613)
303 PF11848 DUF3368: Domain of un 84.5 4.6 0.0001 23.0 4.9 39 51-89 8-46 (48)
304 PF09613 HrpB1_HrpK: Bacterial 84.4 14 0.00031 27.3 13.0 73 132-208 15-88 (160)
305 PF10366 Vps39_1: Vacuolar sor 84.3 6.1 0.00013 27.1 6.4 31 125-155 37-67 (108)
306 PF11848 DUF3368: Domain of un 84.2 5.4 0.00012 22.7 5.1 37 236-272 10-46 (48)
307 KOG2041 WD40 repeat protein [G 84.2 36 0.00078 31.7 17.8 52 229-280 1020-1074(1189)
308 PRK11906 transcriptional regul 83.8 30 0.00065 30.5 15.2 158 128-287 252-431 (458)
309 KOG0550 Molecular chaperone (D 83.5 29 0.00062 30.1 13.3 148 108-257 179-350 (486)
310 PF07163 Pex26: Pex26 protein; 83.3 18 0.00039 29.5 9.3 26 48-73 38-63 (309)
311 KOG1464 COP9 signalosome, subu 83.3 23 0.0005 28.8 12.8 174 111-284 40-252 (440)
312 COG4455 ImpE Protein of avirul 83.1 7.4 0.00016 30.5 6.9 73 131-205 5-80 (273)
313 TIGR02561 HrpB1_HrpK type III 82.7 16 0.00035 26.6 10.7 17 208-224 55-71 (153)
314 cd00923 Cyt_c_Oxidase_Va Cytoc 82.5 12 0.00026 25.0 8.0 45 246-290 25-69 (103)
315 PF10579 Rapsyn_N: Rapsyn N-te 81.9 6.4 0.00014 25.1 5.1 47 240-286 18-66 (80)
316 PF11207 DUF2989: Protein of u 81.7 15 0.00033 28.3 8.1 47 237-283 149-198 (203)
317 PF11207 DUF2989: Protein of u 81.4 19 0.00042 27.8 8.5 68 180-248 124-198 (203)
318 COG0457 NrfG FOG: TPR repeat [ 81.3 21 0.00046 27.0 18.0 161 128-290 60-229 (291)
319 KOG1550 Extracellular protein 80.9 45 0.00099 30.5 14.3 148 137-290 259-424 (552)
320 TIGR02508 type_III_yscG type I 79.8 16 0.00035 24.7 9.1 86 178-267 21-106 (115)
321 TIGR03504 FimV_Cterm FimV C-te 79.5 5.8 0.00013 22.1 4.0 25 234-258 5-29 (44)
322 KOG1130 Predicted G-alpha GTPa 79.2 7.7 0.00017 33.4 6.3 129 127-255 195-342 (639)
323 PRK10564 maltose regulon perip 78.8 5 0.00011 32.9 5.0 42 229-270 258-299 (303)
324 KOG4567 GTPase-activating prot 78.5 37 0.0008 28.2 9.6 42 148-189 264-305 (370)
325 TIGR03504 FimV_Cterm FimV C-te 78.5 6 0.00013 22.1 3.8 24 133-156 5-28 (44)
326 PF13174 TPR_6: Tetratricopept 78.4 6.4 0.00014 19.6 3.9 22 269-290 6-27 (33)
327 COG2909 MalT ATP-dependent tra 78.4 65 0.0014 30.9 19.8 190 108-298 425-652 (894)
328 KOG2396 HAT (Half-A-TPR) repea 78.1 51 0.0011 29.4 21.2 79 219-298 450-531 (568)
329 PF13762 MNE1: Mitochondrial s 78.0 24 0.00052 25.7 11.7 74 102-175 43-128 (145)
330 PF13934 ELYS: Nuclear pore co 77.7 33 0.00072 27.2 11.3 106 127-240 76-184 (226)
331 COG3947 Response regulator con 77.4 40 0.00086 27.9 15.3 157 143-302 149-356 (361)
332 cd08819 CARD_MDA5_2 Caspase ac 76.8 18 0.00039 23.6 7.0 33 210-243 49-81 (88)
333 PF14689 SPOB_a: Sensor_kinase 76.7 9 0.0002 23.2 4.6 25 266-290 26-50 (62)
334 COG4649 Uncharacterized protei 75.9 32 0.00069 26.0 13.6 115 110-224 70-194 (221)
335 KOG0550 Molecular chaperone (D 74.6 57 0.0012 28.4 14.1 114 111-225 216-349 (486)
336 PF07163 Pex26: Pex26 protein; 74.2 32 0.0007 28.1 8.2 89 132-220 88-181 (309)
337 PF11817 Foie-gras_1: Foie gra 74.0 31 0.00068 27.7 8.5 77 214-290 162-245 (247)
338 PF04097 Nic96: Nup93/Nic96; 73.7 78 0.0017 29.5 17.7 50 44-95 111-160 (613)
339 PF11663 Toxin_YhaV: Toxin wit 73.3 5.5 0.00012 28.4 3.4 35 54-90 104-138 (140)
340 PRK15180 Vi polysaccharide bio 73.2 68 0.0015 28.6 10.7 114 174-290 301-418 (831)
341 PF09477 Type_III_YscG: Bacter 73.1 27 0.00058 23.9 8.7 79 177-258 21-99 (116)
342 PRK11619 lytic murein transgly 72.9 84 0.0018 29.5 22.6 238 43-290 127-373 (644)
343 PRK10564 maltose regulon perip 72.8 8.7 0.00019 31.6 4.9 45 43-87 254-299 (303)
344 COG3947 Response regulator con 72.5 16 0.00035 30.0 6.2 70 198-267 280-357 (361)
345 KOG0890 Protein kinase of the 72.1 1.5E+02 0.0033 32.2 14.7 107 104-217 1389-1503(2382)
346 PF08311 Mad3_BUB1_I: Mad3/BUB 72.1 32 0.0007 24.3 8.9 60 227-288 64-124 (126)
347 COG0735 Fur Fe2+/Zn2+ uptake r 71.7 30 0.00065 25.2 7.2 64 148-212 7-70 (145)
348 PF14689 SPOB_a: Sensor_kinase 71.6 16 0.00034 22.1 4.8 26 231-256 26-51 (62)
349 COG4785 NlpI Lipoprotein NlpI, 71.5 48 0.001 26.2 14.1 28 128-155 100-127 (297)
350 PHA02875 ankyrin repeat protei 71.3 63 0.0014 28.1 10.5 25 52-80 6-30 (413)
351 PRK15180 Vi polysaccharide bio 71.2 38 0.00082 30.1 8.5 119 52-191 296-420 (831)
352 KOG0292 Vesicle coat complex C 70.7 51 0.0011 31.7 9.6 132 106-257 651-782 (1202)
353 KOG4077 Cytochrome c oxidase, 70.5 27 0.00058 24.8 6.1 30 226-255 82-111 (149)
354 KOG1941 Acetylcholine receptor 70.0 43 0.00094 28.6 8.3 124 101-224 125-273 (518)
355 COG4455 ImpE Protein of avirul 69.8 39 0.00084 26.7 7.5 73 164-237 3-81 (273)
356 smart00028 TPR Tetratricopepti 68.8 11 0.00024 17.7 3.6 23 232-254 5-27 (34)
357 PF11663 Toxin_YhaV: Toxin wit 67.0 6.2 0.00013 28.1 2.6 33 137-171 105-137 (140)
358 COG5159 RPN6 26S proteasome re 66.3 74 0.0016 26.3 13.3 137 51-198 9-165 (421)
359 PF11846 DUF3366: Domain of un 65.8 40 0.00086 25.8 7.2 31 194-224 141-171 (193)
360 KOG1920 IkappaB kinase complex 65.4 1.6E+02 0.0034 29.7 16.2 149 134-290 858-1026(1265)
361 PF11846 DUF3366: Domain of un 64.8 38 0.00083 25.9 7.0 31 226-256 142-172 (193)
362 PF04190 DUF410: Protein of un 64.6 76 0.0016 25.8 17.9 159 110-292 2-170 (260)
363 KOG4234 TPR repeat-containing 64.2 61 0.0013 25.3 7.5 92 170-264 103-202 (271)
364 KOG2063 Vacuolar assembly/sort 63.8 1.5E+02 0.0032 28.9 13.5 127 46-173 505-637 (877)
365 PRK13342 recombination factor 63.7 1E+02 0.0022 27.0 13.2 34 241-274 243-276 (413)
366 PRK14700 recombination factor 63.3 82 0.0018 26.2 8.6 83 130-212 126-216 (300)
367 PF06552 TOM20_plant: Plant sp 62.5 67 0.0015 24.5 7.9 36 174-209 40-81 (186)
368 KOG3807 Predicted membrane pro 62.4 96 0.0021 26.2 9.2 56 201-256 279-339 (556)
369 KOG1498 26S proteasome regulat 62.3 1E+02 0.0023 26.6 15.1 89 199-290 133-239 (439)
370 cd07153 Fur_like Ferric uptake 62.1 25 0.00054 24.2 5.1 20 205-224 8-27 (116)
371 KOG2908 26S proteasome regulat 62.0 98 0.0021 26.2 9.8 21 236-256 123-143 (380)
372 KOG4648 Uncharacterized conser 61.5 19 0.00041 30.4 4.7 46 136-183 106-152 (536)
373 COG2976 Uncharacterized protei 61.4 74 0.0016 24.6 13.5 53 205-257 134-188 (207)
374 KOG4234 TPR repeat-containing 61.4 76 0.0017 24.8 8.2 92 134-227 102-198 (271)
375 PF10475 DUF2450: Protein of u 61.4 49 0.0011 27.4 7.4 110 103-217 103-217 (291)
376 KOG4077 Cytochrome c oxidase, 60.6 58 0.0013 23.1 8.0 64 161-224 46-111 (149)
377 cd08819 CARD_MDA5_2 Caspase ac 60.5 45 0.00098 21.8 7.3 66 146-217 21-86 (88)
378 PF14853 Fis1_TPR_C: Fis1 C-te 60.2 32 0.0007 20.0 4.9 34 234-269 7-40 (53)
379 COG5108 RPO41 Mitochondrial DN 59.8 72 0.0016 29.7 8.3 84 102-188 32-129 (1117)
380 cd00280 TRFH Telomeric Repeat 59.7 66 0.0014 24.6 6.9 53 61-126 85-139 (200)
381 PF09454 Vps23_core: Vps23 cor 59.7 38 0.00082 20.8 4.8 56 224-280 4-59 (65)
382 PF10579 Rapsyn_N: Rapsyn N-te 59.2 26 0.00057 22.4 4.1 42 141-182 20-63 (80)
383 PRK11639 zinc uptake transcrip 59.1 57 0.0012 24.5 6.8 61 185-246 14-78 (169)
384 PF10366 Vps39_1: Vacuolar sor 59.0 56 0.0012 22.4 8.3 27 230-256 41-67 (108)
385 TIGR02508 type_III_yscG type I 58.5 55 0.0012 22.2 8.7 52 135-192 47-98 (115)
386 PF01475 FUR: Ferric uptake re 58.2 23 0.0005 24.6 4.4 45 233-277 12-56 (120)
387 PF14669 Asp_Glu_race_2: Putat 58.1 85 0.0018 24.2 12.5 56 233-288 137-206 (233)
388 COG0735 Fur Fe2+/Zn2+ uptake r 58.1 70 0.0015 23.3 7.2 40 184-224 8-47 (145)
389 PF11768 DUF3312: Protein of u 57.6 1.5E+02 0.0033 27.0 9.9 61 130-191 411-473 (545)
390 COG5159 RPN6 26S proteasome re 57.3 1.1E+02 0.0024 25.3 11.0 132 134-265 10-166 (421)
391 PF09454 Vps23_core: Vps23 cor 56.5 19 0.00042 22.0 3.2 49 40-89 3-51 (65)
392 KOG4648 Uncharacterized conser 56.4 93 0.002 26.5 7.9 88 170-264 105-199 (536)
393 cd08326 CARD_CASP9 Caspase act 56.4 53 0.0012 21.3 6.1 32 212-243 45-76 (84)
394 PF10255 Paf67: RNA polymerase 55.8 61 0.0013 28.3 7.1 58 167-224 127-191 (404)
395 PF02847 MA3: MA3 domain; Int 55.5 37 0.0008 23.2 5.0 23 132-154 7-29 (113)
396 COG5108 RPO41 Mitochondrial DN 54.7 84 0.0018 29.3 7.9 89 167-255 33-130 (1117)
397 PRK11639 zinc uptake transcrip 53.6 93 0.002 23.3 7.5 62 152-214 16-77 (169)
398 KOG0403 Neoplastic transformat 52.5 1E+02 0.0022 27.3 7.7 72 200-275 512-586 (645)
399 PF11817 Foie-gras_1: Foie gra 52.2 78 0.0017 25.4 7.0 52 168-219 184-240 (247)
400 PF12796 Ank_2: Ankyrin repeat 52.2 54 0.0012 20.9 5.2 15 108-122 4-18 (89)
401 PHA02875 ankyrin repeat protei 51.9 69 0.0015 27.9 7.2 177 107-299 8-196 (413)
402 cd07153 Fur_like Ferric uptake 51.9 43 0.00092 23.0 4.8 41 50-90 5-45 (116)
403 PF02847 MA3: MA3 domain; Int 51.1 75 0.0016 21.6 6.0 26 201-226 6-31 (113)
404 KOG2582 COP9 signalosome, subu 49.7 1.7E+02 0.0037 25.2 9.7 32 56-90 194-225 (422)
405 cd00280 TRFH Telomeric Repeat 48.7 1.2E+02 0.0026 23.2 7.4 21 170-190 119-139 (200)
406 KOG2063 Vacuolar assembly/sort 48.6 1.4E+02 0.003 29.1 8.7 37 173-209 602-638 (877)
407 smart00804 TAP_C C-terminal do 48.1 18 0.00039 22.0 2.1 23 241-263 38-61 (63)
408 KOG2066 Vacuolar assembly/sort 47.2 2.7E+02 0.0058 26.7 13.6 143 106-256 364-533 (846)
409 PF11838 ERAP1_C: ERAP1-like C 47.2 1.7E+02 0.0036 24.4 19.1 61 197-257 169-230 (324)
410 KOG2908 26S proteasome regulat 47.1 1.8E+02 0.0039 24.7 9.3 84 132-215 80-175 (380)
411 PF02607 B12-binding_2: B12 bi 47.1 39 0.00084 21.3 3.7 41 238-278 11-51 (79)
412 smart00638 LPD_N Lipoprotein N 46.7 2.4E+02 0.0052 26.0 18.9 47 112-158 323-371 (574)
413 KOG1550 Extracellular protein 46.4 2.4E+02 0.0052 26.0 13.9 149 108-259 259-428 (552)
414 PF10155 DUF2363: Uncharacteri 46.4 1E+02 0.0023 21.8 12.3 109 116-224 7-125 (126)
415 PF04762 IKI3: IKI3 family; I 46.0 3.2E+02 0.0068 27.2 14.4 50 176-226 792-843 (928)
416 PF10255 Paf67: RNA polymerase 45.5 2E+02 0.0044 25.2 8.6 96 161-256 74-192 (404)
417 PF09670 Cas_Cas02710: CRISPR- 45.0 2.1E+02 0.0045 24.9 11.7 56 135-191 139-198 (379)
418 PF03745 DUF309: Domain of unk 44.7 70 0.0015 19.3 6.0 55 54-121 8-62 (62)
419 PF08311 Mad3_BUB1_I: Mad3/BUB 44.5 1.1E+02 0.0024 21.6 10.0 43 180-222 81-124 (126)
420 PHA02940 hypothetical protein; 44.5 1.7E+02 0.0036 23.6 7.5 70 100-171 144-213 (315)
421 KOG4567 GTPase-activating prot 44.5 1.8E+02 0.004 24.4 7.7 70 182-252 263-342 (370)
422 PF01475 FUR: Ferric uptake re 44.4 43 0.00093 23.2 3.9 43 47-89 9-51 (120)
423 TIGR03581 EF_0839 conserved hy 44.4 1.4E+02 0.0031 23.5 6.7 79 212-290 136-235 (236)
424 KOG0403 Neoplastic transformat 43.7 1.2E+02 0.0026 26.8 6.9 76 165-241 512-587 (645)
425 KOG4521 Nuclear pore complex, 43.2 3.7E+02 0.0081 27.3 13.1 158 55-220 930-1125(1480)
426 PF09868 DUF2095: Uncharacteri 42.0 86 0.0019 21.7 4.7 24 169-192 68-91 (128)
427 cd07229 Pat_TGL3_like Triacylg 41.9 1.2E+02 0.0026 26.5 6.7 60 186-245 175-254 (391)
428 PRK09462 fur ferric uptake reg 41.9 1.3E+02 0.0029 21.8 7.6 61 152-213 7-68 (148)
429 PRK09687 putative lyase; Provi 41.6 2E+02 0.0043 23.7 21.5 181 96-290 66-261 (280)
430 COG4003 Uncharacterized protei 41.5 52 0.0011 21.2 3.4 39 41-79 26-66 (98)
431 COG2976 Uncharacterized protei 41.3 1.7E+02 0.0036 22.8 14.4 125 162-290 54-186 (207)
432 PF12926 MOZART2: Mitotic-spin 41.3 1E+02 0.0022 20.2 7.3 42 183-224 29-70 (88)
433 KOG0991 Replication factor C, 39.6 2E+02 0.0044 23.2 12.9 52 220-273 231-282 (333)
434 KOG2034 Vacuolar sorting prote 39.3 3.8E+02 0.0081 26.2 15.1 164 106-288 366-555 (911)
435 PF09670 Cas_Cas02710: CRISPR- 39.1 1.6E+02 0.0034 25.6 7.2 48 209-256 143-197 (379)
436 KOG0686 COP9 signalosome, subu 38.7 2.7E+02 0.0059 24.4 12.6 94 128-223 151-255 (466)
437 KOG1586 Protein required for f 38.6 2.1E+02 0.0045 23.1 12.3 17 208-224 165-181 (288)
438 TIGR01914 cas_Csa4 CRISPR-asso 37.9 2.3E+02 0.0049 24.1 7.4 67 207-274 286-352 (354)
439 smart00777 Mad3_BUB1_I Mad3/BU 37.7 1.5E+02 0.0032 21.0 7.8 43 245-287 80-123 (125)
440 COG2405 Predicted nucleic acid 37.5 86 0.0019 22.7 4.3 39 51-89 115-153 (157)
441 PF14669 Asp_Glu_race_2: Putat 37.3 2E+02 0.0043 22.4 13.4 51 202-252 137-205 (233)
442 TIGR03362 VI_chp_7 type VI sec 36.9 1.5E+02 0.0033 24.7 6.5 55 236-290 221-277 (301)
443 PF12862 Apc5: Anaphase-promot 36.8 1.2E+02 0.0027 19.9 6.3 19 238-256 51-69 (94)
444 PF11768 DUF3312: Protein of u 36.6 2.9E+02 0.0063 25.3 8.3 23 202-224 413-435 (545)
445 PRK09462 fur ferric uptake reg 36.5 1E+02 0.0022 22.4 5.0 59 186-245 6-69 (148)
446 PF10345 Cohesin_load: Cohesin 36.5 3.6E+02 0.0078 25.2 19.4 182 108-290 371-604 (608)
447 KOG3364 Membrane protein invol 36.2 1.1E+02 0.0024 22.2 4.7 68 194-263 29-104 (149)
448 COG5210 GTPase-activating prot 35.9 3.3E+02 0.0073 24.6 9.3 81 143-224 319-404 (496)
449 PF10475 DUF2450: Protein of u 35.6 2.6E+02 0.0056 23.2 8.6 27 164-190 129-155 (291)
450 PF04910 Tcf25: Transcriptiona 35.5 2.9E+02 0.0063 23.8 14.1 56 235-290 110-166 (360)
451 PF09868 DUF2095: Uncharacteri 35.4 1.4E+02 0.003 20.8 4.9 26 132-157 66-91 (128)
452 COG2178 Predicted RNA-binding 35.4 2.1E+02 0.0046 22.2 10.8 87 204-291 36-149 (204)
453 KOG2659 LisH motif-containing 34.6 2.4E+02 0.0051 22.5 8.1 91 130-222 29-128 (228)
454 KOG2297 Predicted translation 34.3 2.8E+02 0.0062 23.3 13.2 77 132-218 260-342 (412)
455 KOG0989 Replication factor C, 34.0 2.9E+02 0.0063 23.3 9.3 41 154-196 202-242 (346)
456 PF04762 IKI3: IKI3 family; I 34.0 4.9E+02 0.011 26.0 12.0 131 139-288 790-926 (928)
457 smart00386 HAT HAT (Half-A-TPR 33.9 61 0.0013 15.5 3.9 27 242-269 1-27 (33)
458 cd08326 CARD_CASP9 Caspase act 33.8 1.4E+02 0.0029 19.4 6.4 61 219-283 21-81 (84)
459 PRK06645 DNA polymerase III su 33.0 3.8E+02 0.0083 24.4 11.2 35 154-190 201-235 (507)
460 cd08332 CARD_CASP2 Caspase act 32.7 1.5E+02 0.0032 19.5 6.7 29 212-240 49-77 (90)
461 KOG0686 COP9 signalosome, subu 32.4 3.5E+02 0.0076 23.8 14.6 168 100-271 152-352 (466)
462 TIGR03581 EF_0839 conserved hy 31.1 2.7E+02 0.0058 22.0 6.4 29 113-141 136-177 (236)
463 cd08315 Death_TRAILR_DR4_DR5 D 30.6 1.7E+02 0.0036 19.6 5.0 48 143-192 47-94 (96)
464 PF04090 RNA_pol_I_TF: RNA pol 30.3 2.6E+02 0.0057 21.7 10.0 30 45-74 41-70 (199)
465 PF10345 Cohesin_load: Cohesin 30.1 4.6E+02 0.01 24.5 17.0 161 129-290 61-252 (608)
466 KOG4814 Uncharacterized conser 29.9 4.1E+02 0.0088 25.1 8.2 86 137-224 364-455 (872)
467 COG2405 Predicted nucleic acid 29.8 1.4E+02 0.003 21.6 4.4 58 215-273 97-154 (157)
468 COG2178 Predicted RNA-binding 29.2 2.7E+02 0.0059 21.6 8.0 47 108-154 39-96 (204)
469 KOG0890 Protein kinase of the 29.2 8.4E+02 0.018 27.2 14.2 49 133-183 1455-1504(2382)
470 PF08424 NRDE-2: NRDE-2, neces 29.1 3.5E+02 0.0076 22.8 13.0 117 144-262 48-189 (321)
471 PRK14956 DNA polymerase III su 28.9 4.4E+02 0.0096 23.9 11.8 97 147-263 186-283 (484)
472 PF02184 HAT: HAT (Half-A-TPR) 28.8 93 0.002 16.0 3.3 24 243-268 2-25 (32)
473 PF11123 DNA_Packaging_2: DNA 28.3 1.6E+02 0.0035 18.6 4.8 31 212-242 12-45 (82)
474 KOG0545 Aryl-hydrocarbon recep 27.6 3.4E+02 0.0074 22.1 8.4 49 208-256 241-292 (329)
475 PF07575 Nucleopor_Nup85: Nup8 27.5 2.9E+02 0.0064 25.5 7.4 61 196-256 404-466 (566)
476 PRK14962 DNA polymerase III su 27.5 4.6E+02 0.01 23.6 11.4 39 239-277 254-292 (472)
477 PF03943 TAP_C: TAP C-terminal 27.2 29 0.00062 20.0 0.6 22 241-262 26-48 (51)
478 PF12926 MOZART2: Mitotic-spin 27.1 1.9E+02 0.0041 19.0 7.9 47 249-295 29-75 (88)
479 COG4785 NlpI Lipoprotein NlpI, 27.1 3.3E+02 0.0071 21.8 15.4 30 228-257 237-266 (297)
480 smart00544 MA3 Domain in DAP-5 27.0 2.1E+02 0.0045 19.4 10.7 23 203-225 8-30 (113)
481 PF13934 ELYS: Nuclear pore co 26.7 3.3E+02 0.0071 21.6 16.0 101 165-274 79-183 (226)
482 PF07064 RIC1: RIC1; InterPro 26.5 3.6E+02 0.0077 22.0 15.3 79 207-290 163-247 (258)
483 TIGR02710 CRISPR-associated pr 26.4 3.1E+02 0.0067 23.9 6.7 55 233-287 135-195 (380)
484 PF12554 MOZART1: Mitotic-spin 26.2 1.3E+02 0.0027 17.2 3.0 27 135-161 12-38 (48)
485 PRK14958 DNA polymerase III su 25.7 5.2E+02 0.011 23.6 11.4 22 241-262 258-279 (509)
486 PRK12356 glutaminase; Reviewed 25.6 4.1E+02 0.009 22.5 10.4 21 75-95 93-113 (319)
487 PF07575 Nucleopor_Nup85: Nup8 25.6 2.5E+02 0.0055 25.9 6.6 24 44-68 148-171 (566)
488 PRK00971 glutaminase; Provisio 25.6 2.5E+02 0.0054 23.6 5.9 129 157-297 88-218 (307)
489 TIGR01529 argR_whole arginine 25.4 1.8E+02 0.0039 21.3 4.6 40 50-89 5-44 (146)
490 TIGR03184 DNA_S_dndE DNA sulfu 25.3 2.3E+02 0.005 19.4 4.8 36 242-277 61-98 (105)
491 PRK13341 recombination factor 25.1 6.3E+02 0.014 24.4 16.1 107 157-277 192-307 (725)
492 cd08780 Death_TRADD Death Doma 25.1 2.1E+02 0.0045 18.9 4.4 44 137-182 42-85 (90)
493 cd08789 CARD_IPS-1_RIG-I Caspa 24.9 2E+02 0.0044 18.6 6.4 14 211-224 46-59 (84)
494 PF15469 Sec5: Exocyst complex 24.9 3.1E+02 0.0067 20.7 8.2 55 101-155 60-114 (182)
495 cd07910 MiaE MiaE tRNA-modifyi 24.8 3.2E+02 0.0069 20.9 8.1 55 61-115 62-119 (180)
496 PF11838 ERAP1_C: ERAP1-like C 24.3 4.1E+02 0.0089 22.0 16.2 150 132-287 134-303 (324)
497 KOG4507 Uncharacterized conser 24.0 4.6E+02 0.01 24.5 7.4 100 141-241 621-723 (886)
498 KOG0991 Replication factor C, 23.9 4E+02 0.0086 21.6 9.5 38 260-299 236-273 (333)
499 smart00777 Mad3_BUB1_I Mad3/BU 23.7 2.7E+02 0.0059 19.7 8.8 43 179-221 80-123 (125)
500 KOG0307 Vesicle coat complex C 23.7 7.2E+02 0.016 25.0 9.0 23 48-70 490-512 (1049)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-50 Score=370.08 Aligned_cols=272 Identities=31% Similarity=0.489 Sum_probs=264.3
Q ss_pred ccccCCCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC-----------------C
Q 036263 34 QTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------N 96 (305)
Q Consensus 34 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----------------~ 96 (305)
...++++++||.++||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.+. +
T Consensus 178 ~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~ 257 (697)
T PLN03081 178 RRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257 (697)
T ss_pred HHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc
Confidence 44578888999999999999999999999999999999999999999999999999998876 8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCc--cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 036263 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174 (305)
Q Consensus 97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (305)
|..+|++|+++|++.|++++|.++|+.|+. ..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999976 778999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254 (305)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 254 (305)
.|++++|.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|.+||+.+||.||.+|+++|+.++|.++|++|
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccccC
Q 036263 255 QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305 (305)
Q Consensus 255 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 305 (305)
.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..|+.|+..||++|
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 999999999999999999999999999999999999678999999999985
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.6e-49 Score=365.91 Aligned_cols=285 Identities=18% Similarity=0.268 Sum_probs=248.0
Q ss_pred chhhhhhcCCCCCccccccCCCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC---
Q 036263 19 QNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--- 95 (305)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--- 95 (305)
+.+.+.+.....++.++. +....||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.++
T Consensus 482 y~k~G~vd~A~~vf~eM~-~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~de 560 (1060)
T PLN03218 482 CAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560 (1060)
T ss_pred HHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 444444444444444443 4456788888888888888888888888888888888888888888888888887776
Q ss_pred ----------------CChhHHHHHHHHHHhcCChHHHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHH
Q 036263 96 ----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVM 153 (305)
Q Consensus 96 ----------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (305)
||..+|++++.+|++.|++++|.++|+.|.+ ..+|+.+|.+|++.|++++|.++|++|
T Consensus 561 A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7888899999999999999999999988865 467999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc----cCchh
Q 036263 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH----KRTLV 229 (305)
Q Consensus 154 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~ 229 (305)
.+.|+.||..||++++.+|++.|++++|.+++++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|. .||..
T Consensus 641 ~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv 720 (1060)
T PLN03218 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 58999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccccC
Q 036263 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305 (305)
Q Consensus 230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 305 (305)
+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|++++|.+++++|. ..|+.||..+|++|
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsL 795 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCI 795 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 88999999988864
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-47 Score=354.29 Aligned_cols=267 Identities=19% Similarity=0.209 Sum_probs=218.3
Q ss_pred CCCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC-----------------CChhH
Q 036263 38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMV 100 (305)
Q Consensus 38 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----------------~~~~~ 100 (305)
+....||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.++ ||..+
T Consensus 465 ~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT 544 (1060)
T PLN03218 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 4556677777777777777777777777777777777777777777777777777777 77788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036263 101 STALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC 172 (305)
Q Consensus 101 ~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (305)
|+.+|.+|++.|++++|.++|++|.. ..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+++|.+|
T Consensus 545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 88888888888888888888877732 4568888888888888888888888888888888888888888888
Q ss_pred cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc----CchhhHHHHHHHHHhcCChHHHH
Q 036263 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----RTLVSWNSIIVGFAVNGFVGEAL 248 (305)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~ 248 (305)
++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.
T Consensus 625 ~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 88888888888888888888888888888888888888888888888888873 67888888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccccC
Q 036263 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305 (305)
Q Consensus 249 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 305 (305)
++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. ..|+.||..||++|
T Consensus 705 ~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~-~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK-RLGLCPNTITYSIL 760 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHH
Confidence 888888888888888888888888888888888888888888 78888888888753
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-47 Score=354.89 Aligned_cols=272 Identities=31% Similarity=0.588 Sum_probs=251.2
Q ss_pred ccccCCCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC-----------------C
Q 036263 34 QTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------N 96 (305)
Q Consensus 34 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----------------~ 96 (305)
...++++++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.++ |
T Consensus 242 ~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 44578889999999999999999999999999999999999999999999999999999888 8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCc--cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 036263 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174 (305)
Q Consensus 97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (305)
|..+|++|+.+|++.|++++|.++|+.|+. ..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 999999999999999999999999999965 778999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCc---------------------------
Q 036263 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT--------------------------- 227 (305)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------------------------- 227 (305)
.|++++|.++++.+.+.|+.|+..+|++||++|++.|++++|.++|++|.++|
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998886544
Q ss_pred ------------------------------------------------------------------------hhhHHHHH
Q 036263 228 ------------------------------------------------------------------------LVSWNSII 235 (305)
Q Consensus 228 ------------------------------------------------------------------------~~~~~~li 235 (305)
+.+||++|
T Consensus 482 ~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI 561 (857)
T PLN03077 482 LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILL 561 (857)
T ss_pred HhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHH
Confidence 34567777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccccC
Q 036263 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305 (305)
Q Consensus 236 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 305 (305)
.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..|+.|+.+||+||
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 7778888888888888888888899999999999999999999999999999998778999998888875
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.4e-47 Score=352.37 Aligned_cols=272 Identities=30% Similarity=0.518 Sum_probs=263.0
Q ss_pred cccccCCCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC-----------------
Q 036263 33 IQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------- 95 (305)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------- 95 (305)
....+++|++||+++||.+|.+|++.|++++|+++|++|...|+.||..||++++++|+..++
T Consensus 140 A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~ 219 (857)
T PLN03077 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE 219 (857)
T ss_pred HHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC
Confidence 345578889999999999999999999999999999999999999999999999999988766
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCc--cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 036263 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173 (305)
Q Consensus 96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (305)
|+..++++|+.+|++.|+++.|.++|+.|+. ..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~ 299 (857)
T PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299 (857)
T ss_pred cccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Confidence 8999999999999999999999999999976 77899999999999999999999999999999999999999999999
Q ss_pred CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 036263 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253 (305)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 253 (305)
+.|+.+.|.+++..+.+.|+.||..+|++++.+|++.|++++|.++|++|.+||+.+||.+|.+|++.|++++|.++|++
T Consensus 300 ~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccccC
Q 036263 254 MQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305 (305)
Q Consensus 254 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 305 (305)
|.+.|+.||..||+.++.+|++.|++++|.++++.|. ..|+.|+..+|++|
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~-~~g~~~~~~~~n~L 430 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE-RKGLISYVVVANAL 430 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH-HhCCCcchHHHHHH
Confidence 9999999999999999999999999999999999999 99999999988864
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5e-43 Score=320.19 Aligned_cols=262 Identities=26% Similarity=0.347 Sum_probs=253.9
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHhhcCCCC-----------------CChhHHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYG-TNPSHITFVTLLSGCADFPS-----------------NNVMVSTAL 104 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~-----------------~~~~~~~~l 104 (305)
++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++ |+..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 466799999999999999999999999999864 88999999999999999887 999999999
Q ss_pred HHHHHhcCChHHHHHHHHhcCc--cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHH
Q 036263 105 LDMYAKFGRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182 (305)
Q Consensus 105 l~~~~~~g~~~~a~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 182 (305)
+.+|++.|+++.|.++|++|++ ..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 9999999999999999999976 77899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036263 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262 (305)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 262 (305)
+++..+.+.|+.+|..+|++||++|++.|++++|.++|++|.++|+.+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccccC
Q 036263 263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305 (305)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 305 (305)
..||+.++.+|++.|++++|.++++.|. +.|+.||..+|++|
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~-~~g~~~d~~~~~~L 366 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLI-RTGFPLDIVANTAL 366 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCCCCeeehHHH
Confidence 9999999999999999999999999999 89999999999864
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=8.4e-18 Score=144.63 Aligned_cols=253 Identities=11% Similarity=0.000 Sum_probs=193.7
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHhhcCCCC----------------CChhHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS---HITFVTLLSGCADFPS----------------NNVMVSTAL 104 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~----------------~~~~~~~~l 104 (305)
+..+|..+...+.+.|++++|..+++.+.+.+..++ ...+..+...+.+.++ .+..++..+
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l 147 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQL 147 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 556788888899999999999999999887543222 2345555666665555 456678888
Q ss_pred HHHHHhcCChHHHHHHHHhcCcc----------ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 036263 105 LDMYAKFGRMDLATVVFDVMRGC----------DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174 (305)
Q Consensus 105 l~~~~~~g~~~~a~~~~~~~~~~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (305)
+..+.+.|++++|.+.++.+... ..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALA 226 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHH
Confidence 88888899999998888887441 124556677788899999999998887643 2245577778888888
Q ss_pred cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--CchhhHHHHHHHHHhcCChHHHHHHHH
Q 036263 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFN 252 (305)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~ 252 (305)
.|++++|.++++++.+.+......+++.+..+|.+.|++++|...++++.+ |+...+..+...+.+.|++++|..+++
T Consensus 227 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 227 QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999888764222346678888889999999999999888763 666667888888999999999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHhCCCCCcc
Q 036263 253 LMQKGVFKTDEVSFTGALTACSH---AGLIEDGLQYFDIMKKIYRVSPQIE 300 (305)
Q Consensus 253 ~m~~~g~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~p~~~ 300 (305)
++.+. .|+..++..++..+.. .|+.+++..+++.|. ..++.|++.
T Consensus 307 ~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~-~~~~~~~p~ 354 (389)
T PRK11788 307 EQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV-GEQLKRKPR 354 (389)
T ss_pred HHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH-HHHHhCCCC
Confidence 88774 5888888888877664 458888999999888 777777775
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=9.2e-17 Score=138.19 Aligned_cols=244 Identities=13% Similarity=0.026 Sum_probs=199.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHhhcCCCC--------------CC------hhHHHHHHHHHHh
Q 036263 52 ISRHCRSGCILEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPS--------------NN------VMVSTALLDMYAK 110 (305)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~--------------~~------~~~~~~ll~~~~~ 110 (305)
...+...|++++|+..|.++.+. .| +..++..+...+...++ |+ ...+..+...|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 33456789999999999999985 44 45577777777777776 22 2467888999999
Q ss_pred cCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhcCcCChhHH
Q 036263 111 FGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD----YLTIISVLNVCANVRTLGIG 181 (305)
Q Consensus 111 ~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a 181 (305)
.|+++.|..+|+++.+ ..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...|++++|
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999964 45688999999999999999999999987653332 22455677788899999999
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc--hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT--LVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
...++++.+.. +.+...+..+...|.+.|++++|.++++++.+ |+ ..+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998865 44577888899999999999999999999984 33 356788999999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccc
Q 036263 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303 (305)
Q Consensus 258 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 303 (305)
.|+...+..+...+.+.|++++|..+++++. . ..|+...+.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l-~--~~P~~~~~~ 319 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQL-R--RHPSLRGFH 319 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHH-H--hCcCHHHHH
Confidence 4777777888999999999999999999888 2 357665543
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.73 E-value=9.7e-15 Score=138.27 Aligned_cols=242 Identities=12% Similarity=0.078 Sum_probs=142.2
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLD 106 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~ 106 (305)
.+...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...++ .+...+..+..
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 456778888888888888888888888887642 2344556666666655555 34566777777
Q ss_pred HHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHH
Q 036263 107 MYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG 181 (305)
Q Consensus 107 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 181 (305)
.+.+.|++++|.++++.+.. ...+..+...+...|++++|.+.|+++... .|+..++..+..++.+.|++++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHH
Confidence 77777777777777777643 334566666667777777777777766654 34445555566666666666666
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036263 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 258 (305)
.+.++.+.+.. +.+...+..+...|...|+.++|.+.|+++.+ .+...++.+...+...|+ ++|..++++..+..
T Consensus 756 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 756 VKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 66666665543 44555666666666666666666666666542 233444444444444444 44444444444321
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 259 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+-+..++..+...+...|++++|.++++.+.
T Consensus 834 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 834 -PNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1122333334444444444444444444444
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.71 E-value=2.7e-14 Score=135.32 Aligned_cols=242 Identities=11% Similarity=0.002 Sum_probs=128.4
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHHHH
Q 036263 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLDMY 108 (305)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~~~ 108 (305)
..++..+...+.+.|+.++|...|+++.+.+ +.+...+..+...+...++ .+...|..+..++
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3444444444444555555555554444321 1223333333333333333 3344555555556
Q ss_pred HhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHH
Q 036263 109 AKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183 (305)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 183 (305)
.+.|++++|...|+.+.. ...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666665555432 2335555555555666666666665554431 2234555555555555666666666
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036263 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261 (305)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 261 (305)
+++.+.+.+ +.+...+..+...+.+.|++++|.+.|+++.. |+..++..+..++...|++++|.+.++++.+.. +.
T Consensus 691 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~ 768 (899)
T TIGR02917 691 IAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN 768 (899)
T ss_pred HHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 665555544 34455555556666666666666666665542 333455555566666666666666666655542 33
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 262 DEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+...+..+...|.+.|++++|.++|+.+.
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45555566666666666666666666665
No 11
>PF13041 PPR_2: PPR repeat family
Probab=99.58 E-value=6.5e-15 Score=86.87 Aligned_cols=50 Identities=28% Similarity=0.468 Sum_probs=48.3
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcC
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD 92 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 92 (305)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999864
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=9.8e-13 Score=107.54 Aligned_cols=235 Identities=17% Similarity=0.157 Sum_probs=185.1
Q ss_pred CCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF 121 (305)
Q Consensus 42 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 121 (305)
..+..+|..+|.++|+.-..+.|.++|++-.+...+.+..+||.+|.+.+ |.+ |.---++-+-
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----------------~~~-~K~Lv~EMis 266 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----------------YSV-GKKLVAEMIS 266 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----------------hhc-cHHHHHHHHH
Confidence 35678999999999999999999999999999989999999999887631 222 2212223333
Q ss_pred Hhc-CccccHHHHHHHHHcCCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhH-HHHHHHHHh----hc
Q 036263 122 DVM-RGCDFWTALLNGFVKRDYFEE----ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI-GLWMHRYVP----KQ 191 (305)
Q Consensus 122 ~~~-~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~----~~ 191 (305)
++| ++..|+|+++++..+.|+++. |.+++.+|++-|++|+..+|..+|..+++.++..+ +..++.++. ..
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 333 447889999999999887664 57788999999999999999999999999888755 333333332 22
Q ss_pred CCC----CChhHHHHHHHHHHhcCChHHHHHHHHhccc--------C---chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 192 DFK----DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--------R---TLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 192 ~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
.+. .|...|...+..|.+..+.+-|.++-.-++. + ...-|..+....|.....+....+|+.|.-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 232 3566778888999999999999888776652 1 223567778888999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhC
Q 036263 257 GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294 (305)
Q Consensus 257 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 294 (305)
.-+-|+..+...++++..-.|.++-..+++.++. .+|
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~g 463 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK-EYG 463 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH-Hhh
Confidence 8889999999999999999999999999999998 766
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.55 E-value=1.1e-11 Score=112.92 Aligned_cols=152 Identities=16% Similarity=0.020 Sum_probs=71.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhH----HHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI----GLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210 (305)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 210 (305)
..+.+.|++++|...+++..+.. +.+...+..+...+...|++++ |...++...+.. +.+...+..+...+.+.
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHC
Confidence 34444445555554444444321 1123344444444455555443 445555544432 23344555555555555
Q ss_pred CChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHH
Q 036263 211 GCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS-FTGALTACSHAGLIEDGLQYF 286 (305)
Q Consensus 211 g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~ 286 (305)
|++++|...+++..+ | +...+..+..++...|++++|...++++... .|+... +..+..++...|++++|...|
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555555442 2 2334444555555555555555555555543 233222 222334455555555555555
Q ss_pred HHHH
Q 036263 287 DIMK 290 (305)
Q Consensus 287 ~~m~ 290 (305)
+...
T Consensus 376 ~~al 379 (656)
T PRK15174 376 EHYI 379 (656)
T ss_pred HHHH
Confidence 5554
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.55 E-value=2e-11 Score=111.15 Aligned_cols=239 Identities=9% Similarity=-0.059 Sum_probs=188.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHhhcCCCC----------------CChhHHHHHHHHHH
Q 036263 47 QWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTLLSGCADFPS----------------NNVMVSTALLDMYA 109 (305)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~~~~ 109 (305)
.+..+..+....|++++|.+.|+++.+. .|+ ...+..+-..+...++ .+...+..+..++.
T Consensus 78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~ 155 (656)
T PRK15174 78 LLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLV 155 (656)
T ss_pred HHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444446666799999999999998874 454 4455555555556666 44567888899999
Q ss_pred hcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHH
Q 036263 110 KFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM 184 (305)
Q Consensus 110 ~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 184 (305)
..|+.++|...++.+.. ...+..+ ..+...|++++|...++.+.+..-.++...+..+..++...|++++|...
T Consensus 156 ~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~ 234 (656)
T PRK15174 156 LMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQT 234 (656)
T ss_pred HCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999987632 2223333 34788999999999999987654334455556667788999999999999
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcCChHH----HHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF----ARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
++...+.. +.+...+..+...|...|++++ |...|++..+ | +...+..+...+...|++++|...+++..+.
T Consensus 235 ~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 235 GESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999875 5568888899999999999986 7999998874 3 5678899999999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 258 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
. +-+...+..+..++.+.|++++|...++.+.
T Consensus 314 ~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 314 H-PDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3 2245667778889999999999999999888
No 15
>PF13041 PPR_2: PPR repeat family
Probab=99.53 E-value=3.8e-14 Score=83.60 Aligned_cols=50 Identities=26% Similarity=0.449 Sum_probs=48.5
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275 (305)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 275 (305)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999975
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.49 E-value=5e-11 Score=108.49 Aligned_cols=223 Identities=13% Similarity=0.055 Sum_probs=171.3
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM 124 (305)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 124 (305)
...|+.+...+...|++++|+..|++..+. .|+. ...|..+...+...|++++|...|+..
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~-----------------~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRV-----------------TQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc-----------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345666666666677777777777776652 3431 234556667788899999999999887
Q ss_pred Cc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChh
Q 036263 125 RG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198 (305)
Q Consensus 125 ~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 198 (305)
.. ...|..+...+...|++++|...|++..+. .| +...+..+...+.+.|++++|...++...+.. +.+..
T Consensus 392 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~ 468 (615)
T TIGR00990 392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPD 468 (615)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChH
Confidence 44 566888889999999999999999998774 45 46677788888999999999999999988764 55688
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccc--Cc-hh-------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036263 199 VCNTLMDVYSRFGCIEFARQVFQRMHK--RT-LV-------SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268 (305)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 268 (305)
.++.+...+...|++++|.+.|++... |+ .. .++.....+...|++++|.+++++..+.. +.+...+..
T Consensus 469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~ 547 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVAT 547 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 899999999999999999999998763 21 11 12222333445799999999999987753 224457888
Q ss_pred HHHHHhccCcHHHHHHHHHHHH
Q 036263 269 ALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 269 li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+...+.+.|++++|...|+...
T Consensus 548 la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 548 MAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 9999999999999999999876
No 17
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1.1e-10 Score=95.77 Aligned_cols=253 Identities=10% Similarity=0.132 Sum_probs=193.7
Q ss_pred CCCchHhHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC---------------------
Q 036263 41 TIDTTVQWTSSISRHCRSGCILE----AALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------------------- 95 (305)
Q Consensus 41 ~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--------------------- 95 (305)
..||..|||+++.+.++.|+++. |++++.+|++-|+.|+..+|..+|..+.+.++
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 47999999999999999998875 56788999999999999999999999988887
Q ss_pred -----CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-------------cccHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 036263 96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-------------CDFWTALLNGFVKRDYFEEALEYFRVMQISG 157 (305)
Q Consensus 96 -----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (305)
.+...|...++.|.+..+.+.|.++-.-+.. ..-|..+....+.....+.-+..|+.|.-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 4456677888888888899888888766543 1115566777778888888999999998887
Q ss_pred CCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC-Ch--H-----------HHHHHHHhc
Q 036263 158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG-CI--E-----------FARQVFQRM 223 (305)
Q Consensus 158 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--~-----------~a~~~~~~~ 223 (305)
+-|+..+...++.+..-.+.++-.-+++..+...|...+...-.-++..+++.. .. . -|..+++..
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999988886666655555555555544 11 0 111111111
Q ss_pred c---------cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 224 H---------KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV----FKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 224 ~---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
. +-.....+.+.-.+.+.|..++|.+++....+.+ ..|......-++..-.+..+...|..+++-|.
T Consensus 509 e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 509 ESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1 1245567777788899999999999999985543 34444555577777778889999999998886
Q ss_pred HHhC
Q 036263 291 KIYR 294 (305)
Q Consensus 291 ~~~~ 294 (305)
.++
T Consensus 589 -~~n 591 (625)
T KOG4422|consen 589 -AFN 591 (625)
T ss_pred -HcC
Confidence 443
No 18
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=4e-12 Score=112.29 Aligned_cols=258 Identities=15% Similarity=0.082 Sum_probs=177.2
Q ss_pred CCCccccccCCCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC------CChhHHH
Q 036263 29 PQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------NNVMVST 102 (305)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------~~~~~~~ 102 (305)
|+-|....-..+..||.+||..+|.-||..|+++.|- +|.-|+-...+.+...|+.++.+...+++ |...+|.
T Consensus 9 ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt 87 (1088)
T KOG4318|consen 9 PTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYT 87 (1088)
T ss_pred cchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHH
Confidence 3344444456667899999999999999999999999 99999988899999999999999888877 8889999
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHhcCcCChhHH
Q 036263 103 ALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQ-ISGVEPDYLTIISVLNVCANVRTLGIG 181 (305)
Q Consensus 103 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~~~~~~a 181 (305)
.|+.+|...||+.. .+..++ -.-.++..+...|-......++..+. ..+.-||..+. +.-....|-++.+
T Consensus 88 ~Ll~ayr~hGDli~-fe~veq-----dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv~eglwaql 158 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL-FEVVEQ-----DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLVLEGLWAQL 158 (1088)
T ss_pred HHHHHHHhccchHH-HHHHHH-----HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHHHHHHHHHH
Confidence 99999999999876 222222 12345556666666655555554432 22345554433 2223344555555
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhccc-CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036263 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC-IEFARQVFQRMHK-RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 259 (305)
.+++..+...... ..... +++-+..... +++-..+-+...+ ++..+|..++++-..+|+.+.|..++.+|++.|+
T Consensus 159 lkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 5555444222100 01111 2333322222 3333333333333 7888888888888888999999999999999998
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccc
Q 036263 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303 (305)
Q Consensus 260 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 303 (305)
+.+.+-|+.|+-+ .++...++.++..|. ..|+.|+.+||.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmq-e~gv~p~seT~a 275 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQ-EKGVQPGSETQA 275 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHH-HhcCCCCcchhH
Confidence 8888888888877 677888888888888 889999888874
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.47 E-value=1.4e-11 Score=105.39 Aligned_cols=49 Identities=8% Similarity=0.068 Sum_probs=35.3
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHhhcCCCC
Q 036263 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTLLSGCADFPS 95 (305)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 95 (305)
..+|..+-..+-..|++++|++.|+.+.+ ++|+ ...|..+-.++...++
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~ 165 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGD 165 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCC
Confidence 45788888888899999999999999887 4553 4555555555555555
No 20
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=9.9e-13 Score=107.90 Aligned_cols=223 Identities=16% Similarity=0.140 Sum_probs=110.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM- 124 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~- 124 (305)
.-|..+.......+++++|.+.|+++...+.. +...+..++.. ...++.++|.++++..
T Consensus 45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-------------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~ 104 (280)
T PF13429_consen 45 EYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-------------------NPQDYERLIQL-LQDGDPEEALKLAEKAY 104 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc-------------------ccccccccccc-ccccccccccccccccc
Confidence 33333334444456666666666665543211 12233444444 5778888888877655
Q ss_pred ---CccccHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH
Q 036263 125 ---RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200 (305)
Q Consensus 125 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 200 (305)
.+...+..++..+.+.|+++++.++++...... .+++...|..+...+.+.|+.++|...+++..+.. |.|....
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~ 183 (280)
T PF13429_consen 105 ERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDAR 183 (280)
T ss_dssp -------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHH
T ss_pred ccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 235667788889999999999999999976533 34567788888889999999999999999999985 5568889
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036263 201 NTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277 (305)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 277 (305)
..++..+...|+.+++.++++...+ .|...+..+..+|...|+.++|..+|++..+.. +.|......+..++...|
T Consensus 184 ~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 184 NALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAG 262 (280)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccc
Confidence 9999999999999998888877763 466778899999999999999999999988853 347788889999999999
Q ss_pred cHHHHHHHHHHHH
Q 036263 278 LIEDGLQYFDIMK 290 (305)
Q Consensus 278 ~~~~a~~~~~~m~ 290 (305)
+.++|..+.+...
T Consensus 263 ~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 263 RKDEALRLRRQAL 275 (280)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 9999999988765
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.44 E-value=3.6e-10 Score=102.92 Aligned_cols=156 Identities=11% Similarity=-0.004 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 036263 131 TALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209 (305)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 209 (305)
+.+...+...|++++|...+++..+. .|+ ...|..+...+...|++++|...++...+.. +.+..+|..+...+..
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33334444555666666666555442 343 4455555666666666666666666665553 3445666666667777
Q ss_pred cCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036263 210 FGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286 (305)
Q Consensus 210 ~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 286 (305)
.|++++|...|++..+ | +...+..+...+.+.|++++|...|++..+. .+-+...+..+...+...|++++|++.|
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 7777777777776653 2 4455666667777777777777777776653 2234566667777777777777777777
Q ss_pred HHHH
Q 036263 287 DIMK 290 (305)
Q Consensus 287 ~~m~ 290 (305)
+...
T Consensus 491 ~~Al 494 (615)
T TIGR00990 491 DTAI 494 (615)
T ss_pred HHHH
Confidence 7766
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=3.1e-10 Score=90.06 Aligned_cols=191 Identities=12% Similarity=0.057 Sum_probs=158.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036263 98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC 172 (305)
Q Consensus 98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (305)
...+..+...+.+.|++++|...+++... ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45567778889999999999999988744 4457788899999999999999999887753 33566778888889
Q ss_pred cCcCChhHHHHHHHHHhhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHH
Q 036263 173 ANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEAL 248 (305)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 248 (305)
...|++++|...++...+... +.....+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999987532 23456677788899999999999999998874 24567888899999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 249 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
..+++.... .+.+...+..+...+...|+.+.|..+.+.+.
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999998876 34566777788888889999999999988876
No 23
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.41 E-value=5.7e-10 Score=108.30 Aligned_cols=244 Identities=13% Similarity=0.036 Sum_probs=181.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHhhcCCCC---------------C-ChhHHHHHHHHHHh
Q 036263 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTLLSGCADFPS---------------N-NVMVSTALLDMYAK 110 (305)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~---------------~-~~~~~~~ll~~~~~ 110 (305)
+..+...+...|++++|++.|++..+. .|+ ...+..+-..+.+.++ | +...+..+...+.+
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~ 541 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG 541 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 445566777888999999988888773 454 3444444455555555 2 33334444445566
Q ss_pred cCChHHHHHHHHhcCcc---------------ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc
Q 036263 111 FGRMDLATVVFDVMRGC---------------DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175 (305)
Q Consensus 111 ~g~~~~a~~~~~~~~~~---------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 175 (305)
.++.++|...++.++.. ..+..+...+...|+.++|.++++. .+++...+..+...+.+.
T Consensus 542 ~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 542 SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQR 616 (1157)
T ss_pred CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHc
Confidence 78888888888776531 1122445677888999999888872 244566777888899999
Q ss_pred CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHH
Q 036263 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFN 252 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 252 (305)
|+.++|...++...+.. +.+...+..+...|...|++++|.+.++...+ .+...+..+..++...|++++|.++++
T Consensus 617 g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 617 GDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999875 56788999999999999999999999998874 245667778888999999999999999
Q ss_pred HHHHCCC--CC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263 253 LMQKGVF--KT---DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 253 ~m~~~g~--~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
++....- .| +...+..+...+...|++++|+..|+......|+.|+.
T Consensus 696 ~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~ 747 (1157)
T PRK11447 696 RLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTR 747 (1157)
T ss_pred HHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCC
Confidence 9887532 22 23456666788889999999999999987666776543
No 24
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.40 E-value=2.5e-11 Score=103.84 Aligned_cols=244 Identities=14% Similarity=0.175 Sum_probs=174.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHH-------------HHhhcCCCC---CChhHHHHHHHHH
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTL-------------LSGCADFPS---NNVMVSTALLDMY 108 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l-------------l~~~~~~~~---~~~~~~~~ll~~~ 108 (305)
+.|..|-..+-.+|++..|+.-|++... +.|+ ...|..+ +.+|.++-. ....++..+...|
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iY 296 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIY 296 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEE
Confidence 4577777777777888888877777765 3443 1112111 111111111 2334455555666
Q ss_pred HhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHH
Q 036263 109 AKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGL 182 (305)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~ 182 (305)
-..|.+|.|+..+++..+ ...|+.|..++-..|++.+|.+.++..... .|+ ....+.|-..+...|.+++|.
T Consensus 297 yeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred eccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHH
Confidence 677788888888877755 556888888888888888888888876653 443 566778888888888888888
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036263 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT-LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259 (305)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 259 (305)
.+|....+-. +--...++.|...|-+.|++++|...|++... |+ ...|+.+...|-..|+.+.|.+.+.+... +
T Consensus 375 ~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~ 451 (966)
T KOG4626|consen 375 RLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--I 451 (966)
T ss_pred HHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--c
Confidence 8888776643 33366778888888888888888888888763 43 35788888888888899999888888877 4
Q ss_pred CCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263 260 KTDE-VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 260 ~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
.|.- ..++.|...|-..|.+.+|+.-+++.. .++||.
T Consensus 452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL---klkPDf 489 (966)
T KOG4626|consen 452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL---KLKPDF 489 (966)
T ss_pred CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH---ccCCCC
Confidence 4543 677888888888999999999888877 777775
No 25
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=2.7e-10 Score=90.26 Aligned_cols=214 Identities=13% Similarity=0.056 Sum_probs=171.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---------c
Q 036263 57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---------C 127 (305)
Q Consensus 57 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---------~ 127 (305)
-..+.++|+++|-+|.+ -|..|| .+--+|.+.|.+.|..|.|+++.+.+.+ .
T Consensus 47 Ls~Q~dKAvdlF~e~l~----~d~~t~---------------e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~ 107 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQ----EDPETF---------------EAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRL 107 (389)
T ss_pred hhcCcchHHHHHHHHHh----cCchhh---------------HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHH
Confidence 35689999999999976 344444 2345677889999999999999998865 2
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC----hhHHHHH
Q 036263 128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN----VRVCNTL 203 (305)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l 203 (305)
...-.|..-|...|-+|.|+++|..+.+.| +.-.....-|+..|-...+|++|.++-+++.+.+-.+. ...|.-+
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence 224457778889999999999999998754 33456788899999999999999999999988764443 3456777
Q ss_pred HHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 036263 204 MDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280 (305)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 280 (305)
...+....+.+.|..++++..+. .+..--.+.+.+...|++++|.+.++...+.+...-..+...|..+|...|+.+
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 77777888999999999998753 334444556778999999999999999999875556678889999999999999
Q ss_pred HHHHHHHHHH
Q 036263 281 DGLQYFDIMK 290 (305)
Q Consensus 281 ~a~~~~~~m~ 290 (305)
+....+..+.
T Consensus 267 ~~~~fL~~~~ 276 (389)
T COG2956 267 EGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHH
Confidence 9999999887
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.37 E-value=1.6e-09 Score=101.87 Aligned_cols=221 Identities=8% Similarity=-0.053 Sum_probs=169.3
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV 123 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 123 (305)
+...|..+-.++.. +++++|+..|.+.... .|+.... ..+...+.+.|++++|...|++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~------------------L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQH------------------RAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHH------------------HHHHHHHHHCCCHHHHHHHHHH
Confidence 56667777766666 8899999988887764 4654321 2233345678999999999987
Q ss_pred cCc----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChh
Q 036263 124 MRG----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198 (305)
Q Consensus 124 ~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 198 (305)
+.. ...+..+...+.+.|+.++|.+.+++..+.. |+ ...+..+.......|++++|...+++..+.. |+..
T Consensus 535 a~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~ 610 (987)
T PRK09782 535 ISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSAN 610 (987)
T ss_pred HhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHH
Confidence 754 2345666777888999999999999887753 43 3333344445556799999999999998764 5688
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263 199 VCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275 (305)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 275 (305)
.|..+..++.+.|+.++|...+++... | +...++.+..++...|++++|...+++..+.. +-+...+..+..++..
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 888999999999999999999998874 3 56778888888999999999999999988843 2356778888889999
Q ss_pred cCcHHHHHHHHHHHH
Q 036263 276 AGLIEDGLQYFDIMK 290 (305)
Q Consensus 276 ~g~~~~a~~~~~~m~ 290 (305)
.|++++|+..++...
T Consensus 690 lGd~~eA~~~l~~Al 704 (987)
T PRK09782 690 LDDMAATQHYARLVI 704 (987)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999999887
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=1.8e-10 Score=99.29 Aligned_cols=244 Identities=14% Similarity=0.031 Sum_probs=194.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHhhc-------------CCCCCChhHHHHHHHHHHh
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYG--TNPSHITFVTLLSGCA-------------DFPSNNVMVSTALLDMYAK 110 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~-------------~~~~~~~~~~~~ll~~~~~ 110 (305)
.....+-.+|-..+++++|.++|+..++.. ..-+..+|.+.+--+. ....-.+.+|.++.++|.-
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 445566788999999999999999998752 2225566666553332 2222677899999999999
Q ss_pred cCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH---HHHHhcCcCChhHHH
Q 036263 111 FGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS---VLNVCANVRTLGIGL 182 (305)
Q Consensus 111 ~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a~ 182 (305)
.++.+.|++.|++... ..+|+.+..-+.....+|.|...|+... ..|...|++ +...|.+.++++.|+
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchhhHHH
Confidence 9999999999999966 5568888888888899999999998754 445555555 566799999999999
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036263 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259 (305)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 259 (305)
-.|+...+-+ +-+.+....+...+-+.|+.++|.+++++... .|+..--.....+...+++++|+..++++++ +
T Consensus 510 ~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~ 586 (638)
T KOG1126|consen 510 FHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE--L 586 (638)
T ss_pred HHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--h
Confidence 9999999876 66788888899999999999999999999873 3555555566778889999999999999999 4
Q ss_pred CCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263 260 KTDE-VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 260 ~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
.|+. ..|..+.+.|-+.|+.+.|+.-|.-+. .+.|..
T Consensus 587 vP~es~v~~llgki~k~~~~~~~Al~~f~~A~---~ldpkg 624 (638)
T KOG1126|consen 587 VPQESSVFALLGKIYKRLGNTDLALLHFSWAL---DLDPKG 624 (638)
T ss_pred CcchHHHHHHHHHHHHHHccchHHHHhhHHHh---cCCCcc
Confidence 5655 667788889999999999999988877 455543
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.33 E-value=1.2e-09 Score=94.00 Aligned_cols=234 Identities=12% Similarity=0.008 Sum_probs=149.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH--HhhcCCCC----------------CChhHHHHHHHHHH
Q 036263 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLL--SGCADFPS----------------NNVMVSTALLDMYA 109 (305)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~~~----------------~~~~~~~~ll~~~~ 109 (305)
|-....+..+.|+++.|.+.|.++.+ ..|+......+. ..+...++ .+......+...|.
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~ 198 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI 198 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 33334455788999999999998876 456654333222 22222222 23344555555556
Q ss_pred hcCChHHHHHHHHhcCcc-------------ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC
Q 036263 110 KFGRMDLATVVFDVMRGC-------------DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR 176 (305)
Q Consensus 110 ~~g~~~~a~~~~~~~~~~-------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 176 (305)
+.|++++|.++++.+.+. ..|..++.......+.+...++|+.+.+. .+.+......+..++...|
T Consensus 199 ~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g 277 (398)
T PRK10747 199 RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECD 277 (398)
T ss_pred HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCC
Confidence 666666666555555431 12222233333333344444444444222 2334556666677777888
Q ss_pred ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHH
Q 036263 177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNL 253 (305)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 253 (305)
+.++|..++++..+. +++.. -.++.+....++.+++.+..++..+ | |...+..+...|.+.+++++|.+.|+.
T Consensus 278 ~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 278 DHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred CHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777763 44442 1233444455788888888877764 3 556677888999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 254 MQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 254 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
..+ ..|+..++..+...+.+.|+.++|.+++++-.
T Consensus 354 al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 354 ALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 988 46999998899999999999999999998765
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=2.5e-09 Score=84.88 Aligned_cols=194 Identities=15% Similarity=0.055 Sum_probs=157.4
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV 123 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 123 (305)
....+..+...+...|++++|.+.+++..+. .|+. ...+..+...+...|++++|.+.+++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~-----------------~~~~~~la~~~~~~~~~~~A~~~~~~ 90 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDD-----------------YLAYLALALYYQQLGELEKAEDSFRR 90 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc-----------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4567888889999999999999999998764 3432 23345566778899999999999988
Q ss_pred cCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCCh
Q 036263 124 MRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197 (305)
Q Consensus 124 ~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 197 (305)
... ...+..+...+...|++++|.+.+++.......| ....+..+...+...|++++|...+++..+.. +.+.
T Consensus 91 al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 169 (234)
T TIGR02521 91 ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRP 169 (234)
T ss_pred HHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCh
Confidence 754 3457788889999999999999999987643223 34567777888999999999999999998865 4457
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 198 RVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
..+..+...+...|++++|...+++..+ .+...+..+...+...|+.++|..+.+.+...
T Consensus 170 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 170 ESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7888999999999999999999998763 35566777888899999999999998887653
No 30
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.27 E-value=8.5e-09 Score=100.28 Aligned_cols=242 Identities=11% Similarity=-0.022 Sum_probs=166.6
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHhhcCCCC------------------------CC
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTLLSGCADFPS------------------------NN 97 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~------------------------~~ 97 (305)
.+...+..+-..+...|++++|++.|++..+. .|+ ...+..+...+..... ..
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 35667778889999999999999999999874 444 3344333333321110 00
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 036263 98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNV 171 (305)
Q Consensus 98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~ 171 (305)
...+..+...+...|++++|...|++... ...+..+...+.+.|++++|...+++..+. .| +...+..+...
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~ 538 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLY 538 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 12234456667788999999999988754 345677888889999999999999887653 33 22222222222
Q ss_pred hcCcCChhHHHHHHHHHhhc---------------------------------------CCCCChhHHHHHHHHHHhcCC
Q 036263 172 CANVRTLGIGLWMHRYVPKQ---------------------------------------DFKDNVRVCNTLMDVYSRFGC 212 (305)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~li~~~~~~g~ 212 (305)
+...++.++|...++.+... ..+.+...+..+...+.+.|+
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 33344444444433322110 124456667778888899999
Q ss_pred hHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263 213 IEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFDI 288 (305)
Q Consensus 213 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (305)
+++|...|++..+ | +...+..+...|...|++++|.+.++...+. .| +..++..+..++...|++++|.++++.
T Consensus 619 ~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 619 YAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999998874 3 5678888999999999999999999987764 34 445666777888889999999999998
Q ss_pred HH
Q 036263 289 MK 290 (305)
Q Consensus 289 m~ 290 (305)
+.
T Consensus 697 al 698 (1157)
T PRK11447 697 LI 698 (1157)
T ss_pred Hh
Confidence 87
No 31
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=5.6e-09 Score=90.43 Aligned_cols=230 Identities=13% Similarity=0.131 Sum_probs=173.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 47 QWTSSISRHCRSGCILEAALEFTRMRLY---GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV 123 (305)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 123 (305)
+...+...|...|+++.|..++.+..+. +..-+...+.+++ +.+...|...+++++|..+|+.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l--------------~~~a~~y~~~~k~~eAv~ly~~ 266 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASML--------------NILALVYRSLGKYDEAVNLYEE 266 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHH--------------HHHHHHHHHhccHHHHHHHHHH
Confidence 3444889999999999999999987764 1111222222222 3466778899999999999998
Q ss_pred cCc-------------cccHHHHHHHHHcCCChHHHHHHHHHHHH---c--CC-CCCH-HHHHHHHHHhcCcCChhHHHH
Q 036263 124 MRG-------------CDFWTALLNGFVKRDYFEEALEYFRVMQI---S--GV-EPDY-LTIISVLNVCANVRTLGIGLW 183 (305)
Q Consensus 124 ~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~--g~-~p~~-~t~~~ll~~~~~~~~~~~a~~ 183 (305)
+.. ..+++.|...|.+.|++++|..++++..+ . |. .|.. .-++.+...|...+++++|..
T Consensus 267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 855 45688899999999999999888876532 1 22 2333 346677788899999999999
Q ss_pred HHHHHhhc---CCC----CChhHHHHHHHHHHhcCChHHHHHHHHhcccC-----------chhhHHHHHHHHHhcCChH
Q 036263 184 MHRYVPKQ---DFK----DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR-----------TLVSWNSIIVGFAVNGFVG 245 (305)
Q Consensus 184 ~~~~~~~~---~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~ 245 (305)
+++...+. -+. .-..+++.+...|.+.|++++|++++++.... ....++.+...|.+.+++.
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~ 426 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE 426 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence 98876542 111 22578999999999999999999999988631 2346788889999999999
Q ss_pred HHHHHHHH----HHHCC-CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 246 EALEYFNL----MQKGV-FKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 246 ~a~~~~~~----m~~~g-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+|.++|.+ |+..| -.|+ ..+|..|...|...|+++.|.++.+...
T Consensus 427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999887 43334 1223 3688999999999999999999998876
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.25 E-value=7.1e-09 Score=97.53 Aligned_cols=223 Identities=10% Similarity=-0.065 Sum_probs=169.8
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD 122 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 122 (305)
|+......+...+...|++++|...|+++... .|+...+ ..+..++.+.|+.++|...++
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~------------------~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL------------------LAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH------------------HHHHHHHHHCCCHHHHHHHHH
Confidence 44333333344556899999999999987653 3433222 233455788999999999998
Q ss_pred hcCcc--ccHH---HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCCh
Q 036263 123 VMRGC--DFWT---ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197 (305)
Q Consensus 123 ~~~~~--~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 197 (305)
+.... ...+ .+.....+.|++++|...+++..+. .|+...+..+..++.+.|+.++|...+++..+.. +.+.
T Consensus 567 qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~ 643 (987)
T PRK09782 567 QAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNS 643 (987)
T ss_pred HHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 88652 2222 2333444569999999999998764 6788889999999999999999999999999986 6678
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 036263 198 RVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE-VSFTGALTAC 273 (305)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~ 273 (305)
..++.+..++...|+.++|...+++..+ | +...+..+..++...|++++|...+++..+. .|+. .+........
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHH
Confidence 8889999999999999999999999874 4 6678999999999999999999999999884 4654 4444555555
Q ss_pred hccCcHHHHHHHHHHHH
Q 036263 274 SHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 274 ~~~g~~~~a~~~~~~m~ 290 (305)
.+..+++.+.+-++..-
T Consensus 722 ~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 722 QQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66666777766665443
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.25 E-value=5.4e-11 Score=97.62 Aligned_cols=189 Identities=16% Similarity=0.132 Sum_probs=108.8
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV 123 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 123 (305)
+...+..++.. ...+++++|.++++...+.. ++...+ ..++..+.+.++++.+..+++.
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l------------------~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYL------------------LSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccccccc--cccchh------------------hHHHHHHHHHhHHHHHHHHHHH
Confidence 55567777777 78899999999988765532 333333 4455567888999999999988
Q ss_pred cCc-------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263 124 MRG-------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195 (305)
Q Consensus 124 ~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (305)
+.. ...|..+...+.+.|+.++|++.+++..+. .| |......++..+...|+.+++.++++...+.. +.
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~ 212 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PD 212 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HT
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cC
Confidence 643 345778888999999999999999998875 66 47778899999999999999999999988875 66
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
|...+..+..+|...|+.++|...|++..+ | |......+..++...|+.++|..+.++...
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 778889999999999999999999999874 4 778888899999999999999999887543
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.25 E-value=7e-09 Score=89.29 Aligned_cols=198 Identities=10% Similarity=-0.075 Sum_probs=145.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHhhcCCCC----------------CCh--------hHHHHHHH
Q 036263 52 ISRHCRSGCILEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPS----------------NNV--------MVSTALLD 106 (305)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~----------------~~~--------~~~~~ll~ 106 (305)
...+...|+++.|.+.+++..+. .| +......+...+.+.++ .+. ..|..++.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777664 34 34444445555555554 111 13333444
Q ss_pred HHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHH
Q 036263 107 MYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG 181 (305)
Q Consensus 107 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 181 (305)
...+..+.+...++++.++. ......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~a 313 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQL 313 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHH
Confidence 44455566777777777755 456788899999999999999999988773 455422 234444566999999
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--cCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
.+..+...+.. +-|...+..+...+.+.+++++|.+.|+... .|+...|..+...+...|+.++|.+++++-..
T Consensus 314 l~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 314 EKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999998875 6677788999999999999999999999997 48888999999999999999999999998644
No 35
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.25 E-value=2.9e-08 Score=92.54 Aligned_cols=151 Identities=7% Similarity=-0.069 Sum_probs=73.5
Q ss_pred HcCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC---ChhHHHHHHHHHHhcCCh
Q 036263 138 VKRDYFEEALEYFRVMQISGVE-PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD---NVRVCNTLMDVYSRFGCI 213 (305)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 213 (305)
...|++++|...|+.+.+.+-. |+. .-..+..++...|++++|...++.+.+..-.. .......+..++.+.|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 3445556666666665554321 221 11113445555666666666666554432100 022334444455566666
Q ss_pred HHHHHHHHhcccCc------------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263 214 EFARQVFQRMHKRT------------------LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275 (305)
Q Consensus 214 ~~a~~~~~~~~~~~------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 275 (305)
++|.++++++...+ ...+..+...+...|++++|.++++++... .+-+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 66666655554210 112334444555556666666666555543 12234445555555555
Q ss_pred cCcHHHHHHHHHHHH
Q 036263 276 AGLIEDGLQYFDIMK 290 (305)
Q Consensus 276 ~g~~~~a~~~~~~m~ 290 (305)
.|++++|++.++...
T Consensus 406 ~g~~~~A~~~l~~al 420 (765)
T PRK10049 406 RGWPRAAENELKKAE 420 (765)
T ss_pred cCCHHHHHHHHHHHH
Confidence 566666666555554
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.1e-08 Score=85.08 Aligned_cols=234 Identities=12% Similarity=0.093 Sum_probs=181.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHhhcCCCC-------------CChhHHHHHHHHHHhcCChHHH
Q 036263 53 SRHCRSGCILEAALEFTRMRLYG--TNPSHITFVTLLSGCADFPS-------------NNVMVSTALLDMYAKFGRMDLA 117 (305)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~-------------~~~~~~~~ll~~~~~~g~~~~a 117 (305)
.+.-...++++|+.+|+++++.. .--|..+|..++-.-..... -.+.|...+.+-|+-.++.+.|
T Consensus 270 ~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKA 349 (559)
T KOG1155|consen 270 AASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKA 349 (559)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHH
Confidence 34456789999999999999872 11267788777655333222 4456677777888888999999
Q ss_pred HHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc
Q 036263 118 TVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191 (305)
Q Consensus 118 ~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 191 (305)
...|++... ...|+.+.+-|....+...|.+-++...+ +.| |-..|-.|-++|.-.+...-|.-.|++..+.
T Consensus 350 v~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~ 427 (559)
T KOG1155|consen 350 VMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL 427 (559)
T ss_pred HHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence 999999865 66799999999999999999999998876 444 8889999999999999999999999999887
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC--
Q 036263 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK----GVFKTD-- 262 (305)
Q Consensus 192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-- 262 (305)
. +.|...|.+|.++|.+.++.++|.+.|.+... -+...+..+.+.|-+.++..+|...|++-.+ .|..-+
T Consensus 428 k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t 506 (559)
T KOG1155|consen 428 K-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET 506 (559)
T ss_pred C-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH
Confidence 6 77899999999999999999999999999874 3447889999999999999999988877544 343222
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263 263 EVSFTGALTACSHAGLIEDGLQYFDIM 289 (305)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~a~~~~~~m 289 (305)
......|..-+.+.+++++|..+....
T Consensus 507 ~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 507 IKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 122223445566777777766644433
No 37
>PRK12370 invasion protein regulator; Provisional
Probab=99.17 E-value=3.4e-08 Score=88.68 Aligned_cols=231 Identities=10% Similarity=-0.054 Sum_probs=147.0
Q ss_pred CchHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHhh-HHHHHHhhcCCCCCChhHHHHHHH--HHHhcCCh
Q 036263 43 DTTVQWTSSISRHCR-----SGCILEAALEFTRMRLYGTNPSHIT-FVTLLSGCADFPSNNVMVSTALLD--MYAKFGRM 114 (305)
Q Consensus 43 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~~~~~~ll~--~~~~~g~~ 114 (305)
.+...|...+.+... .+..++|.+.|++..+ ..|+... |..+-.++ ..+.. .+...+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~-----------~~~~~~g~~~~~~~~ 320 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN--MSPNSIAPYCALAECY-----------LSMAQMGIFDKQNAM 320 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh--cCCccHHHHHHHHHHH-----------HHHHHcCCcccchHH
Confidence 456667777776432 2346789999998886 4665432 22211111 00000 01133457
Q ss_pred HHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHH
Q 036263 115 DLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYV 188 (305)
Q Consensus 115 ~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 188 (305)
++|...+++... ...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...+++.
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 788888877754 445667777778888888888888887764 45 3556777777888888888888888888
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036263 189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264 (305)
Q Consensus 189 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 264 (305)
.+.+ +.+...+..++..+...|++++|...+++..+ | +...+..+..++...|++++|...++++... .|+..
T Consensus 399 l~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~ 475 (553)
T PRK12370 399 LKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGL 475 (553)
T ss_pred HhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhH
Confidence 8765 22333334444456667888888888887752 3 3445666777788888888888888886653 34433
Q ss_pred -HHHHHHHHHhccCcHHHHHHHHHHHHHHh
Q 036263 265 -SFTGALTACSHAGLIEDGLQYFDIMKKIY 293 (305)
Q Consensus 265 -~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 293 (305)
..+.+...+...| +.+...++.+.+..
T Consensus 476 ~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 476 IAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 3344444556666 46777676666433
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.17 E-value=9.9e-08 Score=78.04 Aligned_cols=234 Identities=10% Similarity=0.064 Sum_probs=140.7
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV 123 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 123 (305)
.+..|-.-.++--+.|+.+.+-..+.+..+.--.++... .-+........|+.+.|..-.++
T Consensus 117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v------------------~ltrarlll~~~d~~aA~~~v~~ 178 (400)
T COG3071 117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAV------------------ELTRARLLLNRRDYPAARENVDQ 178 (400)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHH------------------HHHHHHHHHhCCCchhHHHHHHH
Confidence 344455555566666666666666666655311222222 33333444455555555554444
Q ss_pred cCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHhcCcCChhHHHHHHHHHhhc
Q 036263 124 MRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-------YLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191 (305)
Q Consensus 124 ~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 191 (305)
+.. ..+......+|.+.|++.....++..|.+.|+--+ ..+|..+++-....+..+.-...|+.....
T Consensus 179 ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~ 258 (400)
T COG3071 179 LLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK 258 (400)
T ss_pred HHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH
Confidence 432 33455555555666666666666665555554333 234555555544444444444444443322
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc----------------------------------cCchhhHHHHHHH
Q 036263 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH----------------------------------KRTLVSWNSIIVG 237 (305)
Q Consensus 192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----------------------------------~~~~~~~~~li~~ 237 (305)
...++..-.+++.-+.++|+.++|.++..+.. ..+...+.+|...
T Consensus 259 -lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L 337 (400)
T COG3071 259 -LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRL 337 (400)
T ss_pred -hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 23334444444555555555555555444332 1245678899999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 238 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
|.+++.|.+|.+.|+...+ ..|+..+|+.+..++.+.|+..+|.++.++-. ..-.+|+.
T Consensus 338 ~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L-~~~~~~~~ 396 (400)
T COG3071 338 ALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL-LLTRQPNL 396 (400)
T ss_pred HHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH-HHhcCCCC
Confidence 9999999999999998777 57999999999999999999999999999887 55555543
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.16 E-value=1.1e-07 Score=88.75 Aligned_cols=243 Identities=8% Similarity=-0.050 Sum_probs=155.7
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHhhcCCCC---------------C-ChhHHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTLLSGCADFPS---------------N-NVMVSTALLD 106 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~---------------~-~~~~~~~ll~ 106 (305)
+...+..+...+.+.|++++|.++|++..+. .|+ ...+..+...+...++ | +.. +..+..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~ 124 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY 124 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 4445777777888888888888888887663 343 4444445455555555 3 334 667777
Q ss_pred HHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHH------------------------------------
Q 036263 107 MYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEE------------------------------------ 145 (305)
Q Consensus 107 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~------------------------------------ 145 (305)
++...|+.++|+..++++.. ...+..+...+...|..+.
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 77788888888888877744 2233344445544455444
Q ss_pred ----------HHHHHHHHHHc-CCCCCHH-HHH----HHHHHhcCcCChhHHHHHHHHHhhcCCC-CChhHHHHHHHHHH
Q 036263 146 ----------ALEYFRVMQIS-GVEPDYL-TII----SVLNVCANVRTLGIGLWMHRYVPKQDFK-DNVRVCNTLMDVYS 208 (305)
Q Consensus 146 ----------a~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~ 208 (305)
|++.++.+.+. ...|+.. .+. ..+.++...|+.++|...|+.+.+.+.+ |+. ....+..+|.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl 283 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYL 283 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHH
Confidence 44444444332 1223221 111 1133455678899999999998887632 221 2222567889
Q ss_pred hcCChHHHHHHHHhcccCc-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCCH---HHHH
Q 036263 209 RFGCIEFARQVFQRMHKRT-------LVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-----------FKTDE---VSFT 267 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----------~~p~~---~~~~ 267 (305)
..|++++|...|+++.+.+ ......+..++...|++++|.++++.+.+.. -.|+. ..+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 9999999999999876421 2345666778889999999999999988752 11232 2445
Q ss_pred HHHHHHhccCcHHHHHHHHHHHH
Q 036263 268 GALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 268 ~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+...+...|++++|+++++++.
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 66677888899999999999887
No 40
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.12 E-value=2.1e-07 Score=86.15 Aligned_cols=155 Identities=8% Similarity=-0.011 Sum_probs=94.1
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC-----CCCChhHHHHHHHHHHh
Q 036263 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD-----FKDNVRVCNTLMDVYSR 209 (305)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~ 209 (305)
.++...|+..++.+.|+.|...|.+....+-..+.++|...+++++|..+++.+.... .+++......|..+|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 3455556666666777766666655445566666777777777777777777665432 12233334566667777
Q ss_pred cCChHHHHHHHHhccc--C---------------c-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036263 210 FGCIEFARQVFQRMHK--R---------------T-LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271 (305)
Q Consensus 210 ~g~~~~a~~~~~~~~~--~---------------~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 271 (305)
.+++++|..+++++.+ | | ...+..++..+...|+.++|.+.++++... -+-|......+..
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~ 458 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALAS 458 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 7777777777776653 1 0 012334455566667777777777776554 2335566666666
Q ss_pred HHhccCcHHHHHHHHHHHH
Q 036263 272 ACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~ 290 (305)
.+...|.+.+|++.++...
T Consensus 459 v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHHhcCCHHHHHHHHHHHh
Confidence 6666677777776665554
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.11 E-value=3.5e-08 Score=85.34 Aligned_cols=237 Identities=10% Similarity=-0.062 Sum_probs=128.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh--HHHHHHhhcCCCC----------------CChhHHHHHHHHHHhc
Q 036263 50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHIT--FVTLLSGCADFPS----------------NNVMVSTALLDMYAKF 111 (305)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~----------------~~~~~~~~ll~~~~~~ 111 (305)
....+..+.|+++.|.+.|.+..+. .|+... ...........++ .+..+...+...+.+.
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3445666778888888888887653 344321 1111222222222 2334455555555666
Q ss_pred CChHHHHHHHHhcCccc-----cHH----HHHHHHHcCCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhcCcCChh
Q 036263 112 GRMDLATVVFDVMRGCD-----FWT----ALLNGFVKRDYFEEALEYFRVMQISGV---EPDYLTIISVLNVCANVRTLG 179 (305)
Q Consensus 112 g~~~~a~~~~~~~~~~~-----~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~ 179 (305)
|++++|.+.++.+.+.. .+. .........+..+++.+.+..+.+... +.+...+..+...+...|+.+
T Consensus 201 ~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 201 GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 66666665555554311 111 001111111222222223333332210 124555666666667777777
Q ss_pred HHHHHHHHHhhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhccc--C-ch--hhHHHHHHHHHhcCChHHHHHHH
Q 036263 180 IGLWMHRYVPKQDFKDNVRV---CNTLMDVYSRFGCIEFARQVFQRMHK--R-TL--VSWNSIIVGFAVNGFVGEALEYF 251 (305)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~--~~~~~li~~~~~~g~~~~a~~~~ 251 (305)
+|.+++++..+.. |+... .....-.....++.+.+.+.++...+ | |. ....++...+.+.|++++|.+.|
T Consensus 281 ~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 281 SAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred HHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7777777776653 22221 11111122334556666666655542 3 33 44557777788888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 252 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 359 e~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 359 KNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 854443356888878888888888888888888888754
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6.2e-08 Score=82.49 Aligned_cols=251 Identities=11% Similarity=0.007 Sum_probs=196.4
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC---------------C-ChhHHHHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------------N-NVMVSTALLD 106 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------------~-~~~~~~~ll~ 106 (305)
.|+.....-.+-|-..+++.+..++++...+. .++....+..-|.++...++ | ...+|-++.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 35555566677778899999999999998875 45566666666777777777 4 4467888888
Q ss_pred HHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHH
Q 036263 107 MYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG 181 (305)
Q Consensus 107 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 181 (305)
-|.-.|+.++|.+.|.+... ...|-.....|+-.|..++|+..+...-+. ++-...-+--+---|.+.++...|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 88888999999999988744 456888999999999999999888765442 111222233344457788999999
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC----------chhhHHHHHHHHHhcCChHHHHHHH
Q 036263 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR----------TLVSWNSIIVGFAVNGFVGEALEYF 251 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~~~ 251 (305)
.++|.+....- |.|+.+.+-+.-.....+.+.+|..+|+....+ ...+++.|..+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999887763 667788888877777888999999999887621 4467889999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCcc
Q 036263 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIE 300 (305)
Q Consensus 252 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 300 (305)
++.... .+-|..++.++.-.|...|.++.|.+.|.+.. .+.|+..
T Consensus 479 q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~ 523 (611)
T KOG1173|consen 479 QKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNI 523 (611)
T ss_pred HHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccH
Confidence 998775 34588899999999999999999999999877 7778764
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.08 E-value=1.3e-07 Score=81.91 Aligned_cols=201 Identities=11% Similarity=-0.082 Sum_probs=137.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHhhcCCCC----------------CChhHH--------HHHH
Q 036263 51 SISRHCRSGCILEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPS----------------NNVMVS--------TALL 105 (305)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~----------------~~~~~~--------~~ll 105 (305)
....+...|+++.|.+.++.+.+. .| +......+...+...++ .+...+ ..++
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 355555666666666666666664 23 33344444455555554 111212 1112
Q ss_pred HHHHhcCChHHHHHHHHhcC-----ccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHhcCcCC
Q 036263 106 DMYAKFGRMDLATVVFDVMR-----GCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT---IISVLNVCANVRT 177 (305)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~ 177 (305)
..-......+.....++..+ +...+..+...+...|+.++|.+++++..+. .||... ...........++
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCC
Confidence 22223334556666777776 3567888999999999999999999998875 455432 1222222344577
Q ss_pred hhHHHHHHHHHhhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHh--cc--cCchhhHHHHHHHHHhcCChHHHHHHH
Q 036263 178 LGIGLWMHRYVPKQDFKDNV--RVCNTLMDVYSRFGCIEFARQVFQR--MH--KRTLVSWNSIIVGFAVNGFVGEALEYF 251 (305)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~--~~--~~~~~~~~~li~~~~~~g~~~~a~~~~ 251 (305)
.+.+.+.++...+.. +-|. ....++...+.+.|++++|.+.|+. .. .|+...+..+...+.+.|+.++|.+++
T Consensus 315 ~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 315 NEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred hHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888887764 4455 6777899999999999999999994 42 588888999999999999999999999
Q ss_pred HHHHH
Q 036263 252 NLMQK 256 (305)
Q Consensus 252 ~~m~~ 256 (305)
++...
T Consensus 394 ~~~l~ 398 (409)
T TIGR00540 394 QDSLG 398 (409)
T ss_pred HHHHH
Confidence 98543
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=1.7e-07 Score=74.79 Aligned_cols=193 Identities=16% Similarity=0.079 Sum_probs=148.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc--
Q 036263 49 TSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-- 126 (305)
Q Consensus 49 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-- 126 (305)
-+|-+.|.+.|.++.|+++-..+.++ ||. |+..-+.+ .--|..-|.+.|-+|.|+++|..+.+
T Consensus 73 ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdl-T~~qr~lA-----------l~qL~~Dym~aGl~DRAE~~f~~L~de~ 137 (389)
T COG2956 73 LTLGNLFRSRGEVDRAIRIHQTLLES---PDL-TFEQRLLA-----------LQQLGRDYMAAGLLDRAEDIFNQLVDEG 137 (389)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC---CCC-chHHHHHH-----------HHHHHHHHHHhhhhhHHHHHHHHHhcch
Confidence 34556788899999999999988764 432 33322222 23456668889999999999999977
Q ss_pred ---cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhH
Q 036263 127 ---CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD----YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199 (305)
Q Consensus 127 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 199 (305)
....-.|+..|-...+|++|.+.-+++.+.|-++. ..-|-.+...+....+++.|..++.+..+.+ +.++..
T Consensus 138 efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRA 216 (389)
T COG2956 138 EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRA 216 (389)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceeh
Confidence 34567789999999999999999999887665543 2345566667777888999999999888876 455566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCch----hhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTL----VSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
--.+.+.+...|+++.|.+.++.+.+.|. .+...|..+|...|+.++...++.++.+.
T Consensus 217 si~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 217 SIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred hhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 66778888999999999999999986544 45677788899999999888888877654
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=3.1e-08 Score=82.32 Aligned_cols=199 Identities=15% Similarity=0.150 Sum_probs=158.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHH
Q 036263 57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWT 131 (305)
Q Consensus 57 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~ 131 (305)
..|++++|.+.|.+.....-.-....|++-+ .+.+.|++++|++.|-.+.. ..+..
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-------------------t~e~~~~ldeald~f~klh~il~nn~evl~ 562 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-------------------TAEALGNLDEALDCFLKLHAILLNNAEVLV 562 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-------------------cHHHhcCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3678889999998887543222223333222 25678999999999977743 55666
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263 132 ALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210 (305)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 210 (305)
.+.+.|....+...|.+++.+... +.| |......|...|-+.|+...|.+.+-.--+. ++.+..+...|...|...
T Consensus 563 qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhh
Confidence 778888888999999999866543 455 6888899999999999999999987665444 577899999999999999
Q ss_pred CChHHHHHHHHhcc--cCchhhHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036263 211 GCIEFARQVFQRMH--KRTLVSWNSIIVGF-AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278 (305)
Q Consensus 211 g~~~~a~~~~~~~~--~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 278 (305)
.-+++|...|++.. +|+..-|..||..| .+.|++.+|+++|+..... ++-|..++..|++.+...|-
T Consensus 640 qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 640 QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999999875 89999999998765 5689999999999998765 77789999999999887764
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.05 E-value=1.2e-07 Score=85.18 Aligned_cols=206 Identities=13% Similarity=0.069 Sum_probs=144.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHH
Q 036263 59 GCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTAL 133 (305)
Q Consensus 59 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~l 133 (305)
+++++|...+++..+ +.|+. ...+..+...+...|++++|...|++... ...+..+
T Consensus 318 ~~~~~A~~~~~~Al~--ldP~~-----------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 378 (553)
T PRK12370 318 NAMIKAKEHAIKATE--LDHNN-----------------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYY 378 (553)
T ss_pred hHHHHHHHHHHHHHh--cCCCC-----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 457889999998877 35542 23345555667889999999999998854 4468888
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 036263 134 LNGFVKRDYFEEALEYFRVMQISGVEPDY-LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212 (305)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 212 (305)
...+...|++++|...+++..+. .|+. ..+..+...+...|++++|...++++.+...+-+...+..+..++...|+
T Consensus 379 g~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~ 456 (553)
T PRK12370 379 GWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK 456 (553)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC
Confidence 89999999999999999998775 4542 23334444566688999999999998776423345667788888999999
Q ss_pred hHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263 213 IEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEVSFTGALTACSHAGLIEDGLQYFDI 288 (305)
Q Consensus 213 ~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (305)
.++|...++++... +....+.+...|+..| ++|...++.+.+.. -.|....+..++. .-.|+-+.+..+ +.
T Consensus 457 ~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~-~~ 531 (553)
T PRK12370 457 HELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVL--VAHGEAIAEKMW-NK 531 (553)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHH--HHHhhhHHHHHH-HH
Confidence 99999999997742 3344556666777777 47877777765531 2333333333333 334555555544 66
Q ss_pred HH
Q 036263 289 MK 290 (305)
Q Consensus 289 m~ 290 (305)
+.
T Consensus 532 ~~ 533 (553)
T PRK12370 532 FK 533 (553)
T ss_pred hh
Confidence 65
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=6.7e-09 Score=89.77 Aligned_cols=193 Identities=19% Similarity=0.129 Sum_probs=149.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCc---------------------------------------cccHHHHHHHHHcC
Q 036263 100 VSTALLDMYAKFGRMDLATVVFDVMRG---------------------------------------CDFWTALLNGFVKR 140 (305)
Q Consensus 100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~---------------------------------------~~~~~~li~~~~~~ 140 (305)
+..-+..+|...+++++|+.+|+.+++ ..+|-++..+|.-.
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ 434 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ 434 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh
Confidence 345566778888999999999988754 45588888899999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263 141 DYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219 (305)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 219 (305)
++++.|++.|++..+ +.| ...+|+.+-.-+.....+|.|...|+..+... +-+-..|.-+.-.|.+.++++.|+-.
T Consensus 435 kdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred hHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHH
Confidence 999999999988766 567 67888888888888899999999998876543 22333445577889999999999999
Q ss_pred HHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCC
Q 036263 220 FQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296 (305)
Q Consensus 220 ~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 296 (305)
|++..+- +.+....+...+-+.|+.|+|+.++++......+ |..+--.-...+...+++++|+..+++++ .+.
T Consensus 512 fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk---~~v 587 (638)
T KOG1126|consen 512 FQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELK---ELV 587 (638)
T ss_pred HHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHH---HhC
Confidence 9999853 5566667777888999999999999998886533 33333344556667799999999999998 555
Q ss_pred CCc
Q 036263 297 PQI 299 (305)
Q Consensus 297 p~~ 299 (305)
|+.
T Consensus 588 P~e 590 (638)
T KOG1126|consen 588 PQE 590 (638)
T ss_pred cch
Confidence 654
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=9.4e-08 Score=79.63 Aligned_cols=217 Identities=14% Similarity=0.073 Sum_probs=170.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc------
Q 036263 53 SRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG------ 126 (305)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------ 126 (305)
.++-...+.+++.+=.+.....|..-+...- +.+ ..+.-...++|.|+.+|+++..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~-~~~-----------------A~~~y~~rDfD~a~s~Feei~knDPYRl 296 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIK-TQI-----------------AAASYNQRDFDQAESVFEEIRKNDPYRL 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHH-HHH-----------------HHHHhhhhhHHHHHHHHHHHHhcCCCcc
Confidence 4555566777777777777776654332211 111 1123345788888888888744
Q ss_pred ---------------------------------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHh
Q 036263 127 ---------------------------------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVC 172 (305)
Q Consensus 127 ---------------------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~ 172 (305)
..|...+..-|.-.++.+.|...|++..+. .| ....|+.+-.-|
T Consensus 297 ~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEy 374 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEY 374 (559)
T ss_pred hhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHH
Confidence 233444555666678899999999987764 45 466788888899
Q ss_pred cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHH
Q 036263 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALE 249 (305)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~ 249 (305)
....+...|.+-++..++-. +.|-..|-.|.++|.-.+...-|.-.|++..+ | |...|.+|..+|-+.++.++|.+
T Consensus 375 vEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 375 VEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred HHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999876 77888999999999999999999999998873 4 78999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291 (305)
Q Consensus 250 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (305)
-|++....|- .+...+..|.+.|.+.++.++|-..|+.-..
T Consensus 454 Cykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 454 CYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999988763 3668899999999999999999988887663
No 49
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.99 E-value=1.6e-06 Score=80.41 Aligned_cols=186 Identities=8% Similarity=-0.049 Sum_probs=149.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHH
Q 036263 103 ALLDMYAKFGRMDLATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVMQISG-----VEPDYLTIISVLNV 171 (305)
Q Consensus 103 ~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~t~~~ll~~ 171 (305)
-.+.++.+.|+..++++.|+.++. ..+-..+..+|...+++++|+.++++..... ..++......|..+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 455677788899999999999974 2235678899999999999999999986542 12344456789999
Q ss_pred hcCcCChhHHHHHHHHHhhcCC-----------CC--Ch-hHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHH
Q 036263 172 CANVRTLGIGLWMHRYVPKQDF-----------KD--NV-RVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSI 234 (305)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~-----------~~--~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l 234 (305)
+...+++++|..+++.+.+.-. .| |- ..+..++..+...|++.+|++.++++.. | |......+
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~ 456 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIAL 456 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999987311 12 22 2345567888999999999999999984 3 78889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 235 IVGFAVNGFVGEALEYFNLMQKGVFKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 235 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
...+...|.+..|.+.++..... .|+ ..+......+....|++++|..+.+.+.
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999777664 454 4666677888889999999999998876
No 50
>PF12854 PPR_1: PPR repeat
Probab=98.98 E-value=1.1e-09 Score=58.25 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=23.3
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
|+.||..+|+++|++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
No 51
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=7.2e-08 Score=77.00 Aligned_cols=226 Identities=13% Similarity=0.042 Sum_probs=179.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-
Q 036263 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG- 126 (305)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 126 (305)
-+.+-++|.+.|.+.+|...|+.-.+. .|-+.||.. |-.+|-+..+.+.|+.++.+-.+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfll------------------LskvY~ridQP~~AL~~~~~gld~ 285 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLL------------------LSKVYQRIDQPERALLVIGEGLDS 285 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHH------------------HHHHHHHhccHHHHHHHHhhhhhc
Confidence 356778899999999999999887774 555555544 44558888999999999887765
Q ss_pred ---ccc-HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHH
Q 036263 127 ---CDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202 (305)
Q Consensus 127 ---~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 202 (305)
..+ ..-+.+.+-..++.++|.++++...+.. ..+.....++...|.-.++++.|..+++++.+.| .-+...|+.
T Consensus 286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~N 363 (478)
T KOG1129|consen 286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCN 363 (478)
T ss_pred CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhh
Confidence 223 3345577778899999999999887642 3356677788888899999999999999999999 467888999
Q ss_pred HHHHHHhcCChHHHHHHHHhcc----cCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036263 203 LMDVYSRFGCIEFARQVFQRMH----KRT--LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276 (305)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~----~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 276 (305)
+.-+|.-.+++|-+..-|++.. +|+ ...|-.+-...+..||+..|.+-|+-....+- -+...++.|.---.+.
T Consensus 364 igLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 364 IGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARS 442 (478)
T ss_pred HHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhc
Confidence 9999999999999999888876 233 34677888888899999999999998877642 3557888888778899
Q ss_pred CcHHHHHHHHHHHHHHhCCCCCc
Q 036263 277 GLIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 277 g~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
|++++|..+++... .+.|+.
T Consensus 443 G~i~~Arsll~~A~---s~~P~m 462 (478)
T KOG1129|consen 443 GDILGARSLLNAAK---SVMPDM 462 (478)
T ss_pred CchHHHHHHHHHhh---hhCccc
Confidence 99999999999887 555654
No 52
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.95 E-value=1.2e-06 Score=66.73 Aligned_cols=200 Identities=11% Similarity=-0.032 Sum_probs=165.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhc
Q 036263 100 VSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCA 173 (305)
Q Consensus 100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~ 173 (305)
+..-|.-.|...|+...|..-+++..+ ..+|..+...|.+.|..+.|.+-|+.... +.| +..+.|..-.-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence 345566789999999999999988855 56789999999999999999999998766 356 4667777777788
Q ss_pred CcCChhHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHH
Q 036263 174 NVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALE 249 (305)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~ 249 (305)
..|++++|.+.|++....-.-+ -..+|..+.-+..+.|+.+.|...|++..+ | ...+.-.+.......|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 9999999999999988764333 367888888899999999999999999885 3 44677788888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCcccc
Q 036263 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302 (305)
Q Consensus 250 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 302 (305)
++++....|. ++...+...|+---+.|+.+.+.++=..+.+.+.-.+...+|
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 9999988765 899999999998889999999999888888666555554444
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=1.9e-07 Score=77.73 Aligned_cols=236 Identities=11% Similarity=0.097 Sum_probs=167.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHh-hHHHHHHhhcCCCC------------CChhHHHHH-----HHHHHhcCChH
Q 036263 54 RHCRSGCILEAALEFTRMRLYGTNPSHI-TFVTLLSGCADFPS------------NNVMVSTAL-----LDMYAKFGRMD 115 (305)
Q Consensus 54 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~------------~~~~~~~~l-----l~~~~~~g~~~ 115 (305)
-+.+.|+++.|++++.-+.+..-+.-+. .-+...-.+.+.|. .+..-||.- .+.....|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 4678999999999998887654332222 11221222222222 111112211 11223457889
Q ss_pred HHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263 116 LATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190 (305)
Q Consensus 116 ~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 190 (305)
.|.+.+.+... +.....+.-.+-..|++++|++.|-.+..- +.-+..+..-+.+.|-...+...|.+++-+...
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 99998887755 222233444567789999999999776542 234566777788888888899999998877765
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036263 191 QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267 (305)
Q Consensus 191 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 267 (305)
. ++.|+.+..-|...|-+.|+-..|.+.+-+--. -++.+..-|..-|....-+++++.+|++..- ++|+..-|-
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwq 663 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQ 663 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHH
Confidence 5 577889999999999999999999887655442 3777877788888999999999999998766 789999999
Q ss_pred HHHHHH-hccCcHHHHHHHHHHHHHHh
Q 036263 268 GALTAC-SHAGLIEDGLQYFDIMKKIY 293 (305)
Q Consensus 268 ~li~~~-~~~g~~~~a~~~~~~m~~~~ 293 (305)
.++..| .+.|++..|.+++++..+++
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 888755 57899999999999987443
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.92 E-value=1.5e-06 Score=71.84 Aligned_cols=195 Identities=12% Similarity=-0.009 Sum_probs=120.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR 125 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 125 (305)
..|...-..+.+.|+.++|...|++..+ ..|+ +...|+.+...+...|++++|...|+...
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~P~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 125 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALA--LRPD-----------------MADAYNYLGIYLTQAGNFDAAYEAFDSVL 125 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4566666677788888888888888776 3454 23345666677888888888888888774
Q ss_pred c-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH
Q 036263 126 G-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200 (305)
Q Consensus 126 ~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 200 (305)
+ ...|..+...+...|++++|.+.|+...+. .|+..........+...++.++|...++...... .++...+
T Consensus 126 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~ 202 (296)
T PRK11189 126 ELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW 202 (296)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH
Confidence 4 345677777788888888888888877664 4543222222223345667888888886654332 2332222
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcc---c-------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036263 201 NTLMDVYSRFGCIEFARQVFQRMH---K-------RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267 (305)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~---~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 267 (305)
.+.. ...|+..++ +.++.+. + .....|..+...+...|++++|...|++..+.+ +||..-+.
T Consensus 203 -~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~ 274 (296)
T PRK11189 203 -NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHR 274 (296)
T ss_pred -HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence 2222 334444333 2333222 1 133577788888888888888888888887754 23444333
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.91 E-value=2.9e-07 Score=79.95 Aligned_cols=202 Identities=12% Similarity=-0.005 Sum_probs=154.0
Q ss_pred CCCCchHh-HHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChH
Q 036263 40 STIDTTVQ-WTSSISRHCRSGCILEAALEFTRMRLY---GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMD 115 (305)
Q Consensus 40 ~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 115 (305)
...|.+.+ -+.+-..|...+++++|..+|+++... ...++...+ ..+++.|..+|.+.|+++
T Consensus 235 ~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v--------------a~~l~nLa~ly~~~GKf~ 300 (508)
T KOG1840|consen 235 LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV--------------AATLNNLAVLYYKQGKFA 300 (508)
T ss_pred ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH--------------HHHHHHHHHHHhccCChH
Confidence 34455543 344777888999999999999998753 233443333 344577788899999999
Q ss_pred HHHHHHHhcCc-------------cccHHHHHHHHHcCCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHhcCc
Q 036263 116 LATVVFDVMRG-------------CDFWTALLNGFVKRDYFEEALEYFRVMQIS---GVEPD----YLTIISVLNVCANV 175 (305)
Q Consensus 116 ~a~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~----~~t~~~ll~~~~~~ 175 (305)
+|...+++..+ ...++.+...+...+++++|..+++...+. -+.++ ..+++.|-..|...
T Consensus 301 EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~ 380 (508)
T KOG1840|consen 301 EAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM 380 (508)
T ss_pred HHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence 99988887744 233788888999999999999999865432 12222 46789999999999
Q ss_pred CChhHHHHHHHHHhhcC-------CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---------Cc-hhhHHHHHHHH
Q 036263 176 RTLGIGLWMHRYVPKQD-------FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---------RT-LVSWNSIIVGF 238 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~-~~~~~~li~~~ 238 (305)
|++++|.++++..+... ..-....++.+...|.+.++.++|.++|.+... |+ ..+|..|...|
T Consensus 381 gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y 460 (508)
T KOG1840|consen 381 GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY 460 (508)
T ss_pred cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 99999999999876431 122356678888999999999999999988762 33 36899999999
Q ss_pred HhcCChHHHHHHHHHHH
Q 036263 239 AVNGFVGEALEYFNLMQ 255 (305)
Q Consensus 239 ~~~g~~~~a~~~~~~m~ 255 (305)
.+.|+++.|.++.+...
T Consensus 461 ~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 461 RAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHcccHHHHHHHHHHHH
Confidence 99999999999987764
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.91 E-value=2.3e-06 Score=70.28 Aligned_cols=205 Identities=10% Similarity=-0.050 Sum_probs=159.3
Q ss_pred CCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVV 120 (305)
Q Consensus 41 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 120 (305)
...++........+|.+.|++.+...++..|.+.|+--|+..-.. ...+|..+++-....+..+.-...
T Consensus 183 ~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l-----------e~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 183 TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL-----------EQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH-----------HHHHHHHHHHHHhccccchHHHHH
Confidence 344667778888899999999999999999988886655442211 223456677767777777777778
Q ss_pred HHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263 121 FDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195 (305)
Q Consensus 121 ~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (305)
+++.+. ...-.+++.-+.+.|+.++|.++..+-.+++..|+ -...-.+.+.++.+.-.+..+.-.+.. +.
T Consensus 252 W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 252 WKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 888865 45567788889999999999999999988877776 333345667777777777777665543 45
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcc--cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036263 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261 (305)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 261 (305)
++..+.+|...|.+.+.+.+|...|+... .|+..+|+.+.++|.+.|+..+|.+++++....-.+|
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 56889999999999999999999999776 4899999999999999999999999999866443334
No 57
>PF12854 PPR_1: PPR repeat
Probab=98.91 E-value=1.7e-09 Score=57.40 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 257 GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 257 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.|+.||..||+.||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888773
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.87 E-value=7.1e-07 Score=73.72 Aligned_cols=185 Identities=11% Similarity=0.029 Sum_probs=133.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhc
Q 036263 100 VSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCA 173 (305)
Q Consensus 100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~ 173 (305)
.|..+...+.+.|+.++|...|++... ...|+.+...+...|++++|...|++..+ +.|+ ..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 355666678899999999999988854 56799999999999999999999999876 4564 677888888899
Q ss_pred CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC-chhhHHHHHHHHHhcCChHHHHHHHH
Q 036263 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR-TLVSWNSIIVGFAVNGFVGEALEYFN 252 (305)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 252 (305)
..|++++|.+.++...+.. |+..........+...++.++|...|++.... +...|.. .......|+...+ +.+.
T Consensus 144 ~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~~~~ 219 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVEFYLGKISEE-TLME 219 (296)
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHHHHccCCCHH-HHHH
Confidence 9999999999999998865 33222222223345567899999999765432 2223332 2333445666554 3455
Q ss_pred HHHHC---C--CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 253 LMQKG---V--FKT-DEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 253 ~m~~~---g--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+.+. . +.| ....|..+...+.+.|++++|...|+...
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 54432 1 111 23578888999999999999999999887
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=2.7e-07 Score=73.76 Aligned_cols=196 Identities=14% Similarity=0.078 Sum_probs=162.4
Q ss_pred CCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF 121 (305)
Q Consensus 42 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 121 (305)
.|-+.||-.|-++|.+-.+++.|+.+|.+-.+ ..|-..||. ....+.+-..++.++|.+++
T Consensus 253 ~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l-----------------~g~ARi~eam~~~~~a~~lY 313 (478)
T KOG1129|consen 253 FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYL-----------------LGQARIHEAMEQQEDALQLY 313 (478)
T ss_pred CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhh-----------------hhhHHHHHHHHhHHHHHHHH
Confidence 46677888899999999999999999998877 467766663 23345566778999999999
Q ss_pred HhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC
Q 036263 122 DVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196 (305)
Q Consensus 122 ~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (305)
+...+ +....++...|.-.++++.|+.+++++.+.|+. +...|..+--+|.-.+++|-+..-|++....--.|+
T Consensus 314 k~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~ 392 (478)
T KOG1129|consen 314 KLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG 392 (478)
T ss_pred HHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc
Confidence 98865 444566777888899999999999999999864 667899999999999999999999988776543344
Q ss_pred --hhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 197 --VRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 197 --~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
..+|..+.......|++.-|.+.|+-.... +...+|.|...-.+.|++++|..++......
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 457888888889999999999999988743 5688999999999999999999999988773
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.77 E-value=1.1e-05 Score=61.67 Aligned_cols=200 Identities=14% Similarity=-0.005 Sum_probs=161.8
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR 125 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 125 (305)
.+.-.+--+|.+.|+...|..-+++..+. .|+. ..+|..+...|-+.|+.+.|.+-|++..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~-----------------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl 96 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH--DPSY-----------------YLAHLVRAHYYQKLGENDLADESYRKAL 96 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc-----------------HHHHHHHHHHHHHcCChhhHHHHHHHHH
Confidence 34566777899999999999999999874 4442 2345667778999999999999999885
Q ss_pred c-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhH
Q 036263 126 G-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199 (305)
Q Consensus 126 ~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 199 (305)
+ ..+.|....-+|..|++++|...|++....-.-| -..||..+.-+..+.|+++.|...|++..+.. +-....
T Consensus 97 sl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~ 175 (250)
T COG3063 97 SLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPA 175 (250)
T ss_pred hcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChH
Confidence 5 6778999999999999999999999987653333 36788888888899999999999999998876 445667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 267 (305)
.-.+.+...+.|++-.|...++.... ++..+.-.-|+.-...|+.+.+.++=..+.+. -|...-|-
T Consensus 176 ~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 176 LLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 78888899999999999999998875 46666667788888999999998887777763 35554443
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.76 E-value=4.2e-07 Score=81.40 Aligned_cols=203 Identities=13% Similarity=0.104 Sum_probs=135.3
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc------cccHHHHHHHHHc
Q 036263 66 LEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG------CDFWTALLNGFVK 139 (305)
Q Consensus 66 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~li~~~~~ 139 (305)
.++-.+...|+.|+..||.+++.- ||..|+++.|- +|.-|.- ...|+.++.+...
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiar------------------Yc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~ 71 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIAR------------------YCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKE 71 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHH------------------HcccCCCcccc-chhhhhcccccccchhHHHHHhcccc
Confidence 456778888999998888666554 78889999888 8877743 5568889988888
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhH---HHHHHHHHh----hcCCCCChh--------------
Q 036263 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI---GLWMHRYVP----KQDFKDNVR-------------- 198 (305)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~-------------- 198 (305)
.++.+.+. .|...||+.|..+|...|+... +++.+..+. ..|+.....
T Consensus 72 And~Enpk-----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lp 140 (1088)
T KOG4318|consen 72 ANDAENPK-----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLP 140 (1088)
T ss_pred cccccCCC-----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccch
Confidence 88877765 7888999999999999998654 333222221 222211111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccc--CchhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263 199 VCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNG-FVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275 (305)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 275 (305)
--...+.-..-.|.++.+.+++..++. .+. .+-.+++-+.... .+++-..+.+...+ .|+..+|..++.+-.-
T Consensus 141 da~n~illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 141 DAENAILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALA 216 (1088)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHh
Confidence 112233333445666777777766652 111 1111244333322 33444444443333 5999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCCccccc
Q 036263 276 AGLIEDGLQYFDIMKKIYRVSPQIEHHG 303 (305)
Q Consensus 276 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 303 (305)
.|+.+.|..++.+|+ ..|+..+.+.|.
T Consensus 217 ag~~d~Ak~ll~emk-e~gfpir~HyFw 243 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMK-EKGFPIRAHYFW 243 (1088)
T ss_pred cCchhhHHHHHHHHH-HcCCCcccccch
Confidence 999999999999999 999988887664
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.76 E-value=1.5e-05 Score=70.12 Aligned_cols=247 Identities=13% Similarity=0.015 Sum_probs=161.8
Q ss_pred CchH-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhc----CCCCCChhHHHHHHHHHHhc------
Q 036263 43 DTTV-QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA----DFPSNNVMVSTALLDMYAKF------ 111 (305)
Q Consensus 43 ~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~~~~~~ll~~~~~~------ 111 (305)
+|.. ........+.+.|+.++|..+|..+.+. -|+...|...+..+. ...+.+......+...+...
T Consensus 35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~ 112 (517)
T PF12569_consen 35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDA 112 (517)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccc
Confidence 4544 4555667888999999999999999985 677777766665554 21111111111111111110
Q ss_pred ----------C-ChH-HHHHHHHhcCc---cccHHHHHHHHHcCCChHHHHHHHHHHHHc----C----------CCCCH
Q 036263 112 ----------G-RMD-LATVVFDVMRG---CDFWTALLNGFVKRDYFEEALEYFRVMQIS----G----------VEPDY 162 (305)
Q Consensus 112 ----------g-~~~-~a~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g----------~~p~~ 162 (305)
| .+. .+...+..+.. +.+|+.|-..|....+.+-..+++...... | -.|+.
T Consensus 113 ~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~ 192 (517)
T PF12569_consen 113 PRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPST 192 (517)
T ss_pred hhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchH
Confidence 0 000 11111111111 455777777777666666666666665432 1 12333
Q ss_pred --HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHH
Q 036263 163 --LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVG 237 (305)
Q Consensus 163 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~ 237 (305)
+++.-+...|-..|+.++|.++++..++.. +..+..|..-.+.|-+.|++.+|.+.++...+- |-..=+-.+..
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 355666777889999999999999998875 444778888899999999999999999988864 44566667888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 036263 238 FAVNGFVGEALEYFNLMQKGVFKTDEV--------SFTGALTACSHAGLIEDGLQYFDIMKKI 292 (305)
Q Consensus 238 ~~~~g~~~~a~~~~~~m~~~g~~p~~~--------~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (305)
+.++|++++|.+++....+.+..|-.. .......+|.+.|++..|++-|..+.+.
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 899999999999999887776544321 1234456788999999998888877643
No 63
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=2.8e-06 Score=71.59 Aligned_cols=184 Identities=11% Similarity=0.093 Sum_probs=114.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcC
Q 036263 101 STALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCAN 174 (305)
Q Consensus 101 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 174 (305)
|--+...|....+-++.+..|+...+ ..+|.--.....-.+++++|..=|++... +.| +...|.-+-.+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHH
Confidence 33344444444455555555544432 34444444444445556666666655443 344 34445555555567
Q ss_pred cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc-------hh--hHHHHHHHHHhcCC
Q 036263 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT-------LV--SWNSIIVGFAVNGF 243 (305)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-------~~--~~~~li~~~~~~g~ 243 (305)
.+++++++..|++..++ ++..+.+|+-....+...+++++|.+.|+...+ |+ .. ..-.++.. -=.++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhh
Confidence 77888888888887766 566778888888888888888888888887762 22 11 11111111 12377
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 244 VGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 244 ~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+..|.+++.+..+. .| ....|..|...-...|+.++|+++|++-.
T Consensus 519 ~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 519 INQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888888887774 34 34678888888888999999999998653
No 64
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=1.6e-06 Score=70.94 Aligned_cols=148 Identities=12% Similarity=0.123 Sum_probs=106.3
Q ss_pred HHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH----hcCcCChhHH
Q 036263 106 DMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV----CANVRTLGIG 181 (305)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~----~~~~~~~~~a 181 (305)
..+...|++++|+++++...+.......+..+.+.++++.|.+.++.|.+. ..|. +..-+..+ ......+.+|
T Consensus 110 ~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHH
T ss_pred HHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHH
Confidence 445667899999988887755566667788899999999999999998764 3343 33333333 3334578899
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCCh-HHHHHHHHHHHHC
Q 036263 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFV-GEALEYFNLMQKG 257 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 257 (305)
..+|+++.+. .++++.+.+.+..++...|++++|.+++++..+ .+..+...++......|+. +.+.+++.+++..
T Consensus 187 ~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 187 FYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999997665 467888888889999999999999999888764 2455666677777777777 6677788888774
No 65
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.68 E-value=4.5e-05 Score=68.95 Aligned_cols=245 Identities=11% Similarity=0.026 Sum_probs=158.7
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHHHH
Q 036263 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLDMY 108 (305)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~~~ 108 (305)
+...-.....+.-.|++++|.+++.+..+. .+-....|-+|-..+...|+ .|...|..+-...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 333333333444459999999999998875 23356677777777777777 5567888888888
Q ss_pred HhcCChHHHHHHHHhcCc--cc---cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhcCcCChh
Q 036263 109 AKFGRMDLATVVFDVMRG--CD---FWTALLNGFVKRDYFEEALEYFRVMQISGVEPD----YLTIISVLNVCANVRTLG 179 (305)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~--~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~ 179 (305)
.+.|+++.|.-.|.++.+ .. ..---...|-+.|+...|++.|.++....-+.| ..+--.++..+...++.+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 889999999999988855 11 222334567778888888888888876522112 122223344555555556
Q ss_pred HHHHHHHHHhhc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---------------------------------
Q 036263 180 IGLWMHRYVPKQ-DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--------------------------------- 225 (305)
Q Consensus 180 ~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------------------------------- 225 (305)
.|.+.++..... +-..+...++.+...|.+...++.|......+..
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 666666655442 1133444555666666655555555544433221
Q ss_pred ----------------------------------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036263 226 ----------------------------------RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271 (305)
Q Consensus 226 ----------------------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 271 (305)
.++..|.-+..+|...|++.+|+.+|..+......-+...|..+..
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 0223566677778888888888888888877644445667777778
Q ss_pred HHhccCcHHHHHHHHHHHH
Q 036263 272 ACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~ 290 (305)
+|...|.+++|.+.|+...
T Consensus 458 c~~~l~e~e~A~e~y~kvl 476 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVL 476 (895)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 8888888888888888776
No 66
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=3.8e-06 Score=78.83 Aligned_cols=210 Identities=14% Similarity=0.068 Sum_probs=166.7
Q ss_pred CHhhHHHHHHhhcCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhcCc----------cccHHHHHHHHHcCCChHHHH
Q 036263 79 SHITFVTLLSGCADFPSNN-VMVSTALLDMYAKFGRMDLATVVFDVMRG----------CDFWTALLNGFVKRDYFEEAL 147 (305)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------~~~~~~li~~~~~~g~~~~a~ 147 (305)
+..-|.-++++. |+ ...|-..|......++++.|.++++++.. ...|.++++.-..-|.-+...
T Consensus 1443 saeDferlvrss-----PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS-----PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CHHHHHHHHhcC-----CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 444555554432 33 35677888888899999999999999855 456888888888888888889
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--
Q 036263 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-- 225 (305)
Q Consensus 148 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-- 225 (305)
++|++..+. --....|..|...|.+.++.++|.++++.|.+.- .-...+|...+..+.+..+.+.|.+++++..+
T Consensus 1518 kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1518 KVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 999988763 2235678899999999999999999999998763 45678899999999999999999999998874
Q ss_pred ---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCC
Q 036263 226 ---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ 298 (305)
Q Consensus 226 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 298 (305)
..+....-.+..-.+.|+.+.+..+|+..... .+--...|+..+..-.+.|+.+.++.+|++.. ..++.|.
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi-~l~l~~k 1668 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI-ELKLSIK 1668 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHH-hcCCChh
Confidence 24555555566667889999999999998876 33356789999999999999999999999988 7777664
No 67
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.66 E-value=4.4e-06 Score=75.82 Aligned_cols=249 Identities=16% Similarity=0.089 Sum_probs=172.9
Q ss_pred CCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHh-----hHHHHHHhhc-CCCC---------------C
Q 036263 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLY---GTNPSHI-----TFVTLLSGCA-DFPS---------------N 96 (305)
Q Consensus 41 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~-----~~~~ll~~~~-~~~~---------------~ 96 (305)
..+.+...|.+-......|++++|...|+..... ...+|.. |...-+..|. ..++ |
T Consensus 448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 3367788888888899999999999999998865 2333432 1111111111 1111 2
Q ss_pred ChhH-HHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 036263 97 NVMV-STALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQIS-GVEPDYLTIISVL 169 (305)
Q Consensus 97 ~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll 169 (305)
+-.. |-.+.......+...+|...+....+ ...+..+...+.+...+..|.+-|...... ...+|..+...|-
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 2211 11111111122556667766666644 444665666777777777777766665443 2235666666665
Q ss_pred HHhc------------CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHH
Q 036263 170 NVCA------------NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSI 234 (305)
Q Consensus 170 ~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l 234 (305)
+.|. ..+..+.|.++|.+..+.. +-|...-|-+.-+++..|++++|..+|.++.+. +..+|-.+
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl 686 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNL 686 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeH
Confidence 5443 2345677899999888876 678888888999999999999999999999864 44789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 235 IVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 235 i~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.++|+..|+|..|+++|+...+ .+-.-+......|.+++.+.|++.+|.+.+....
T Consensus 687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999999998544 4445577889999999999999999999888777
No 68
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.65 E-value=5e-08 Score=52.43 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH 80 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 80 (305)
.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 69
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.64 E-value=1.5e-05 Score=63.72 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=47.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263 233 SIIVGFAVNGFVGEALEYFNLMQKGVF--KTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291 (305)
Q Consensus 233 ~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (305)
.+...+...|++++|...+++..+... +.....+..+..++.+.|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455668899999999999999887531 22356788899999999999999999998873
No 70
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.62 E-value=7.1e-08 Score=51.49 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=32.4
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 036263 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNP 78 (305)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 78 (305)
+.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.60 E-value=0.00011 Score=64.77 Aligned_cols=220 Identities=14% Similarity=0.060 Sum_probs=146.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc----c
Q 036263 52 ISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG----C 127 (305)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~ 127 (305)
...+...|++++|++.++.-.. ..+|...+ .......+.+.|+.++|..++..+.+ .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~-----------------~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn 71 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAV-----------------LEKRAELLLKLGRKEEAEKIYRELIDRNPDN 71 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 3456788999999999977544 45565544 34445557788888888888877744 2
Q ss_pred cc-HHHHHHHHHcC-----CChHHHHHHHHHHH----------------------------------HcCCCCCHHHHHH
Q 036263 128 DF-WTALLNGFVKR-----DYFEEALEYFRVMQ----------------------------------ISGVEPDYLTIIS 167 (305)
Q Consensus 128 ~~-~~~li~~~~~~-----g~~~~a~~~~~~m~----------------------------------~~g~~p~~~t~~~ 167 (305)
.. |..+..+..-. ...+...++++++. .+|++ .+|+.
T Consensus 72 ~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~ 148 (517)
T PF12569_consen 72 YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSN 148 (517)
T ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHH
Confidence 22 33333333111 23444455555543 33332 13444
Q ss_pred HHHHhcCcCChhHHHHHHHHHhhc----C----------CCCCh--hHHHHHHHHHHhcCChHHHHHHHHhccc--Cc-h
Q 036263 168 VLNVCANVRTLGIGLWMHRYVPKQ----D----------FKDNV--RVCNTLMDVYSRFGCIEFARQVFQRMHK--RT-L 228 (305)
Q Consensus 168 ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~ 228 (305)
|-..|......+...+++...... + -+|+. .++.-+.+.|...|++++|.++.++..+ |+ +
T Consensus 149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ 228 (517)
T PF12569_consen 149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV 228 (517)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH
Confidence 444444444445555555554322 1 13444 3456678889999999999999998875 44 4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCC
Q 036263 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV 295 (305)
Q Consensus 229 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 295 (305)
..|..-.+.+-..|++++|.+.++..+.... -|...-+..+..+.++|++++|.+++.... ..+.
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft-r~~~ 293 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFT-REDV 293 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhc-CCCC
Confidence 5677778889999999999999999998653 366777788889999999999999999887 4444
No 72
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=4.1e-05 Score=72.29 Aligned_cols=225 Identities=14% Similarity=0.091 Sum_probs=175.6
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLY-GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD 122 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 122 (305)
+...|-.-|......+++++|.+++++.... +.+-...-. .+|.++++.-...|.-+...++|+
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKL---------------NiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKL---------------NIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHH---------------HHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3456888888899999999999999998864 222222222 345666666777788888999999
Q ss_pred hcCc----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC--C
Q 036263 123 VMRG----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD--N 196 (305)
Q Consensus 123 ~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~ 196 (305)
++.. ..+|..|...|.+.++.++|-++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+.= +- .
T Consensus 1522 RAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eH 1599 (1710)
T KOG1070|consen 1522 RACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEH 1599 (1710)
T ss_pred HHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhh
Confidence 9865 456889999999999999999999999876 33567789999999999999999999999987752 22 3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 036263 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE--VSFTGALT 271 (305)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~ 271 (305)
.....-.++.-.+.|+.+.+..+|+..... -.-.|+..|+.-.++|+.+.+..+|++....++.|-. ..|...+.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 445566667777899999999999998742 4568999999999999999999999999999887754 45666665
Q ss_pred HHhccCcHHHHHHH
Q 036263 272 ACSHAGLIEDGLQY 285 (305)
Q Consensus 272 ~~~~~g~~~~a~~~ 285 (305)
.=-..|+-+.++.+
T Consensus 1680 yEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1680 YEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHhcCchhhHHHH
Confidence 55555665544443
No 73
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.59 E-value=1e-07 Score=51.22 Aligned_cols=33 Identities=36% Similarity=0.537 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036263 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262 (305)
Q Consensus 230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 262 (305)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
No 74
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.56 E-value=7.3e-05 Score=67.63 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=128.8
Q ss_pred HHHHHhcCChHHHHHHHHhcCc-------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-----------------
Q 036263 105 LDMYAKFGRMDLATVVFDVMRG-------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP----------------- 160 (305)
Q Consensus 105 l~~~~~~g~~~~a~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----------------- 160 (305)
++.+...++-+.|.+.++...+ ...++.++..+.+...++.|......+.....++
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 3444445555666666655543 3347788888888888888887777776522222
Q ss_pred ----------CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHhccc---
Q 036263 161 ----------DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK--DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--- 225 (305)
Q Consensus 161 ----------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--- 225 (305)
+..+ --++-++.+....+....+...+.+..+. -++..|.-+..+|...|++.+|..+|..+..
T Consensus 367 ~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 367 LCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred cccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 2222 12233344555555555566666666633 3567889999999999999999999999985
Q ss_pred -CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 226 -RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 226 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+...|-.+..+|...|.++.|.+.|+..... .|+ ...--.|-..+.+.|+.++|.+.+..+.
T Consensus 446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 36778999999999999999999999999884 453 3444455666778999999999998765
No 75
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.56 E-value=1.4e-07 Score=50.37 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036263 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261 (305)
Q Consensus 229 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 261 (305)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466777777777777777777777777776665
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.52 E-value=4.6e-06 Score=68.24 Aligned_cols=147 Identities=14% Similarity=0.122 Sum_probs=108.0
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH---HHHHHHHHhcC
Q 036263 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC---NTLMDVYSRFG 211 (305)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g 211 (305)
..+...|++++|+++++.- .+.......+..+.+.++++.|.+.++.|.+.+ .|.... .+.+..+.-..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCch
Confidence 4566789999999888642 356677778889999999999999999998753 343322 23333333345
Q ss_pred ChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH-HHHHHHHH
Q 036263 212 CIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI-EDGLQYFD 287 (305)
Q Consensus 212 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~ 287 (305)
.+.+|.-+|+++.+ +++.+.+.+..++...|++++|.+++.+....+ +-+..++..++-+....|+. +.+.+++.
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 79999999999985 467788888899999999999999999977654 23566777777777777877 67788888
Q ss_pred HHH
Q 036263 288 IMK 290 (305)
Q Consensus 288 ~m~ 290 (305)
++.
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 887
No 77
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.52 E-value=6.6e-05 Score=68.48 Aligned_cols=191 Identities=13% Similarity=0.103 Sum_probs=139.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH--H
Q 036263 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT--I 165 (305)
Q Consensus 96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~ 165 (305)
.++.+.+.|.+-|.-.|+++.++.+.+.+.. ...|--+.++|-..|++++|..+|-+-.+ ..|+..+ +
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccc
Confidence 5667777788888888888888888877743 44577788888889999999998866554 3455433 3
Q ss_pred HHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC----ChHHHHHHHHhcccC---chhhHHHHHHHH
Q 036263 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG----CIEFARQVFQRMHKR---TLVSWNSIIVGF 238 (305)
Q Consensus 166 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~---~~~~~~~li~~~ 238 (305)
.-|...+.+.|+.+.+...|+.+.+.. +.+..+...|...|...+ ..++|..++.+..++ |...|-.+...+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 456777888899999999998888774 555667777777777664 457777777777654 445555555544
Q ss_pred HhcCChHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 239 AVNGFVGEALEYFNL----MQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 239 ~~~g~~~~a~~~~~~----m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
-. ++...++.+|.. +...+-.+.....|.+..-+...|+++.|...|+...
T Consensus 425 e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 425 EQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred Hh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 43 445444666655 3455555778889999999999999999999999887
No 78
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.52 E-value=0.00018 Score=63.18 Aligned_cols=185 Identities=10% Similarity=-0.073 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 036263 99 MVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173 (305)
Q Consensus 99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (305)
.+|..-...|.+.+.++-|..+|..... ...|......=-..|..++...+|++.... ++-....|......+-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHH
Confidence 3455555556666666666666655533 333555555555556666666666666554 1112333344444455
Q ss_pred CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--cCchhhHHHHHHHHHhcCChHHHHHHH
Q 036263 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYF 251 (305)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~ 251 (305)
..|++..|..++....+.. +.+...|-..++.......++.|..+|.+.. .++...|.--+..-.-.++.++|.+++
T Consensus 596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 5667777777766666654 3456666666666666666777777776665 245555555555555556666666666
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHH
Q 036263 252 NLMQKGVFKTDE-VSFTGALTACSHAGLIEDGLQYFD 287 (305)
Q Consensus 252 ~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~ 287 (305)
++..+. -|+. ..|..+-+.+...++++.|.+.|.
T Consensus 675 Ee~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~ 709 (913)
T KOG0495|consen 675 EEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYL 709 (913)
T ss_pred HHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 665553 2333 334444444555555555554443
No 79
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.50 E-value=0.0002 Score=62.90 Aligned_cols=242 Identities=11% Similarity=0.005 Sum_probs=161.3
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC---------------CChhHHHHHHHHHH
Q 036263 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------------NNVMVSTALLDMYA 109 (305)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------------~~~~~~~~ll~~~~ 109 (305)
...|-....-....|++..|..++.+.-+.. +-+...|-..++.-..... |+..+|..-+..-.
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLER 662 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHH
Confidence 3344444455555566666666666555431 1133333333333332222 55555555555566
Q ss_pred hcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHH
Q 036263 110 KFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM 184 (305)
Q Consensus 110 ~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 184 (305)
-.+..++|.+++++..+ .-.|-.+...+-+.++++.|...|..-.+. .+-....|..+...=-+.|++-.|..+
T Consensus 663 ~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 66777777777766644 223555566666677777776666543332 222455666776666778889999999
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---------------------------------CchhhH
Q 036263 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---------------------------------RTLVSW 231 (305)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------------------------------~~~~~~ 231 (305)
++.....+ +-+...|-..|++-.+.|..+.|..++.+..+ .|....
T Consensus 742 ldrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl 820 (913)
T KOG0495|consen 742 LDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL 820 (913)
T ss_pred HHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhH
Confidence 99988776 67888999999999999999998887665531 144455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 232 NSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 232 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
-.+...|-...++++|.++|.+..+.+ +-+..+|..+...+.+.|.-+.-.+++....
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 566677778889999999999998854 2244788888889999998888888888776
No 80
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.5e-05 Score=66.21 Aligned_cols=209 Identities=16% Similarity=0.102 Sum_probs=154.2
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV 123 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 123 (305)
.+.+|-++--.|.-.|+.++|.+.|.+... +.| .-...|-...++|+-.|.-|.|...+..
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~--lD~-----------------~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATT--LDP-----------------TFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhh--cCc-----------------cccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 344555555555555555666665555432 111 1234577788889999999999988876
Q ss_pred cCc--c---ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc--CC--
Q 036263 124 MRG--C---DFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ--DF-- 193 (305)
Q Consensus 124 ~~~--~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~-- 193 (305)
.-. . ..+--+.--|.+.+..+.|.+.|.+... +-| |....+.+--.....+.+.+|...|+..... .+
T Consensus 372 Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 372 AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 644 2 2234445568889999999999987654 566 5677777777778899999999999877621 01
Q ss_pred --CCChhHHHHHHHHHHhcCChHHHHHHHHhcc---cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036263 194 --KDNVRVCNTLMDVYSRFGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268 (305)
Q Consensus 194 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 268 (305)
.--..+++.|..+|.+.+++++|...+++.. ..+..++.++.-.|...|+++.|.+.|.+... +.||..+-..
T Consensus 450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~ 527 (611)
T KOG1173|consen 450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISE 527 (611)
T ss_pred cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHH
Confidence 1123468899999999999999999999876 45889999999999999999999999999776 7899888777
Q ss_pred HHHHHhc
Q 036263 269 ALTACSH 275 (305)
Q Consensus 269 li~~~~~ 275 (305)
++..+..
T Consensus 528 lL~~aie 534 (611)
T KOG1173|consen 528 LLKLAIE 534 (611)
T ss_pred HHHHHHH
Confidence 7775543
No 81
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=4.6e-05 Score=58.90 Aligned_cols=154 Identities=8% Similarity=0.002 Sum_probs=113.2
Q ss_pred HHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHH
Q 036263 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183 (305)
Q Consensus 104 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 183 (305)
-+..|.+.|+++.+....+.+.+.. ..+...++.+++...++...+.. +.+...|..+...|...|++++|..
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4456888899888765543322110 12223566777777777665542 4478888999999999999999999
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 184 MHRYVPKQDFKDNVRVCNTLMDVY-SRFGC--IEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
.++...+.. +.+...+..+..++ ...|+ .++|.+++++..+ | +...+..+...+...|++++|...|+++.+.
T Consensus 95 a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 95 AYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999998876 56778888888764 67677 5899999999874 3 6678888888999999999999999998886
Q ss_pred CCCCCHHHH
Q 036263 258 VFKTDEVSF 266 (305)
Q Consensus 258 g~~p~~~~~ 266 (305)
. +|+..-+
T Consensus 174 ~-~~~~~r~ 181 (198)
T PRK10370 174 N-SPRVNRT 181 (198)
T ss_pred C-CCCccHH
Confidence 3 4555444
No 82
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=6.9e-05 Score=68.54 Aligned_cols=128 Identities=13% Similarity=0.078 Sum_probs=77.8
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHH
Q 036263 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205 (305)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 205 (305)
...+-.|.....+.|++++|..+++...+ +.|+ ......+...+.+.+++++|....++..... +-+......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 44555666666666666666666666555 3554 3445555666666666666666666666654 444555566666
Q ss_pred HHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 206 VYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
++.+.|++++|..+|+++..+ +..++..+..++-..|+.++|...|++..+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666632 2455666666666666666666666665543
No 83
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=0.00045 Score=58.59 Aligned_cols=98 Identities=9% Similarity=0.132 Sum_probs=59.0
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHH
Q 036263 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEVSFTG 268 (305)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ 268 (305)
..|-..++..-|..-.+.+.++.+..++++..+ | +..+|......-...|+.+.|..+|.-..++. .......|..
T Consensus 433 ~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 433 KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 345555565556555666666666666666653 2 44566666666666777777777777766642 1112233444
Q ss_pred HHHHHhccCcHHHHHHHHHHHH
Q 036263 269 ALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 269 li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.|.--...|.++.|..+++.+.
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHH
Confidence 4444456677777777777776
No 84
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=1.9e-05 Score=69.73 Aligned_cols=208 Identities=11% Similarity=0.043 Sum_probs=127.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---
Q 036263 50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--- 126 (305)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--- 126 (305)
.+.+.+...|-..+|+.+|++..- |.-++.+|+..|+..+|..+..+..+
T Consensus 403 ~laell~slGitksAl~I~Erlem---------------------------w~~vi~CY~~lg~~~kaeei~~q~lek~~ 455 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM---------------------------WDPVILCYLLLGQHGKAEEINRQELEKDP 455 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH---------------------------HHHHHHHHHHhcccchHHHHHHHHhcCCC
Confidence 344566666777777777776532 34444455556655555555544322
Q ss_pred -cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHH
Q 036263 127 -CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205 (305)
Q Consensus 127 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 205 (305)
...|..+........-++.|.++.+....+ .-..+-....+.++++++.+.|+.-.+.. +....+|-....
T Consensus 456 d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~ 527 (777)
T KOG1128|consen 456 DPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGC 527 (777)
T ss_pred cchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccH
Confidence 333555555544444455555555543221 11111111223566666666666555543 445667777777
Q ss_pred HHHhcCChHHHHHHHHhcc--cC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036263 206 VYSRFGCIEFARQVFQRMH--KR-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282 (305)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 282 (305)
+..+.++++.|.+.|.... +| +...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+..-.+.|.+++|
T Consensus 528 ~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 528 AALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHH
Confidence 7777888888888877766 34 45778888888888888888888888887776 34456666666667778888888
Q ss_pred HHHHHHHHHHh
Q 036263 283 LQYFDIMKKIY 293 (305)
Q Consensus 283 ~~~~~~m~~~~ 293 (305)
.+.+..+....
T Consensus 607 ~~A~~rll~~~ 617 (777)
T KOG1128|consen 607 IKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHhh
Confidence 88888776433
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.44 E-value=0.00041 Score=59.00 Aligned_cols=236 Identities=8% Similarity=-0.067 Sum_probs=140.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCH-hhHHH---HHHhhcCCCC---------------CC-hhHHHHHHHHHHhcC
Q 036263 53 SRHCRSGCILEAALEFTRMRLYGTNPSH-ITFVT---LLSGCADFPS---------------NN-VMVSTALLDMYAKFG 112 (305)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~---ll~~~~~~~~---------------~~-~~~~~~ll~~~~~~g 112 (305)
..+...|++++|.+.+++..+. .|+. ..+.. ........+. |+ ......+...+...|
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcC
Confidence 3456789999999999998874 3433 23221 1110000111 22 233445566778889
Q ss_pred ChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHhcCcCChhHHHHH
Q 036263 113 RMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGV-EPDY--LTIISVLNVCANVRTLGIGLWM 184 (305)
Q Consensus 113 ~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~~~~~~a~~~ 184 (305)
++++|...+++... ...+..+...+...|++++|...+++.....- .|+. ..|..+...+...|+.++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999998888754 44567788888899999999999888765421 2232 3455677788899999999999
Q ss_pred HHHHhhcCC-CCChhHH-H--HHHHHHHhcCChHHHHHH--H-Hhccc--C-chhhH--HHHHHHHHhcCChHHHHHHHH
Q 036263 185 HRYVPKQDF-KDNVRVC-N--TLMDVYSRFGCIEFARQV--F-QRMHK--R-TLVSW--NSIIVGFAVNGFVGEALEYFN 252 (305)
Q Consensus 185 ~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~a~~~--~-~~~~~--~-~~~~~--~~li~~~~~~g~~~~a~~~~~ 252 (305)
+++...... .+..... + .++.-+...|..+.+.+. . ..... + ....+ .....++...|+.+.|..+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 988754432 1222111 1 223333344433332222 1 11111 1 11122 245677788899999999998
Q ss_pred HHHHCCCC------CCHHHHHHHHH--HHhccCcHHHHHHHHHHHH
Q 036263 253 LMQKGVFK------TDEVSFTGALT--ACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 253 ~m~~~g~~------p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~ 290 (305)
.+...... ....+-..++. ++...|++++|.+.+....
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88663221 01112222333 4457899999999988876
No 86
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.43 E-value=0.00019 Score=62.87 Aligned_cols=116 Identities=10% Similarity=0.092 Sum_probs=59.5
Q ss_pred cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc----Cch-hhHHHHHHHHHh---cCCh
Q 036263 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----RTL-VSWNSIIVGFAV---NGFV 244 (305)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~li~~~~~---~g~~ 244 (305)
-..|-++....+++.+.+..+.....+-| ....+-...-++++.++|++-.. |++ ..|+..+.-+.+ ....
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 33444555555555555544322111111 11112233335555555555442 333 356666665554 3468
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH--HHHhccCcHHHHHHHHHHHH
Q 036263 245 GEALEYFNLMQKGVFKTDEVSFTGAL--TACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 245 ~~a~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m~ 290 (305)
+.|..+|++..+ |++|...-+--|+ .-=.+.|-...|+++++...
T Consensus 567 EraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 567 ERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 889999999888 6766543222222 12224577777888887753
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.39 E-value=0.00015 Score=61.68 Aligned_cols=89 Identities=10% Similarity=0.064 Sum_probs=49.3
Q ss_pred HHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-----Cch--hhHHHHHHHHH
Q 036263 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----RTL--VSWNSIIVGFA 239 (305)
Q Consensus 167 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~--~~~~~li~~~~ 239 (305)
.+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+ ++. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 44445556666666666666665554 33445555566666666666666666665542 111 22334555566
Q ss_pred hcCChHHHHHHHHHHHH
Q 036263 240 VNGFVGEALEYFNLMQK 256 (305)
Q Consensus 240 ~~g~~~~a~~~~~~m~~ 256 (305)
..|++++|..++++...
T Consensus 198 ~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 198 ERGDYEAALAIYDTHIA 214 (355)
T ss_pred HCCCHHHHHHHHHHHhc
Confidence 66666666666666543
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.00032 Score=58.45 Aligned_cols=224 Identities=12% Similarity=0.071 Sum_probs=125.2
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD 122 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 122 (305)
-|+.....+-+.+...|+.++|+..|++... +.|+..+- ...|. ..+.+.|+.+....+..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~--------------MD~Ya---~LL~~eg~~e~~~~L~~ 290 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEA--------------MDLYA---VLLGQEGGCEQDSALMD 290 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhh--------------HHHHH---HHHHhccCHhhHHHHHH
Confidence 4666777788888888888888888888765 33332111 01111 11234444444444443
Q ss_pred hcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC
Q 036263 123 VMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196 (305)
Q Consensus 123 ~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (305)
.+-. ...|..-.......++++.|+.+-++-.+. .| +...|-.=-..+...++.++|.-.|+...... +.+
T Consensus 291 ~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~r 367 (564)
T KOG1174|consen 291 YLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYR 367 (564)
T ss_pred HHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhh
Confidence 3322 112333333333344444444444433321 22 12222222223344455555555555444432 334
Q ss_pred hhHHHHHHHHHHhcCChHH------------------------------------HHHHHHhccc--Cc-hhhHHHHHHH
Q 036263 197 VRVCNTLMDVYSRFGCIEF------------------------------------ARQVFQRMHK--RT-LVSWNSIIVG 237 (305)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~------------------------------------a~~~~~~~~~--~~-~~~~~~li~~ 237 (305)
...|..|+.+|...|++.+ |.++++.-.+ |+ ....+.+...
T Consensus 368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL 447 (564)
T KOG1174|consen 368 LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHH
Confidence 4555555555555555544 4444443332 22 2355667777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 238 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+...|..+.+..++++-.. ..||....+.|.+.+.....+.+|.+.|....
T Consensus 448 ~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 448 CQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8889999999999999877 56899999999999988888888888887665
No 89
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.35 E-value=6.1e-05 Score=58.23 Aligned_cols=143 Identities=7% Similarity=0.023 Sum_probs=111.6
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213 (305)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (305)
+..|...|+++.+....+.+. .|. ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~----~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA----DPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh----Ccc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 456888899888754443221 111 12223667778888888887776 77899999999999999999
Q ss_pred HHHHHHHHhccc--C-chhhHHHHHHHH-HhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036263 214 EFARQVFQRMHK--R-TLVSWNSIIVGF-AVNGF--VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287 (305)
Q Consensus 214 ~~a~~~~~~~~~--~-~~~~~~~li~~~-~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 287 (305)
++|...|++..+ | +...+..+..++ ...|+ .++|.+++++..+.+. -+...+..+...+.+.|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999874 3 677788887764 67777 5999999999999642 266788888889999999999999999
Q ss_pred HHH
Q 036263 288 IMK 290 (305)
Q Consensus 288 ~m~ 290 (305)
.+.
T Consensus 169 ~aL 171 (198)
T PRK10370 169 KVL 171 (198)
T ss_pred HHH
Confidence 997
No 90
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.35 E-value=0.00017 Score=67.06 Aligned_cols=218 Identities=6% Similarity=-0.051 Sum_probs=145.9
Q ss_pred cCCCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHh-hcCCCCCChhHHHHHHHHHHhcCChH
Q 036263 37 NSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG-CADFPSNNVMVSTALLDMYAKFGRMD 115 (305)
Q Consensus 37 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~~~~~~ll~~~~~~g~~~ 115 (305)
.......+...|..|+..+...+++++|.++.+...+ ..|+...+-..... +.+.++.+-...-.+++...+..++.
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~ 100 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWA 100 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchh
Confidence 3444556888999999999999999999999997666 45654443333222 22333322222225666666666665
Q ss_pred HHHHHHHhcCc----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc
Q 036263 116 LATVVFDVMRG----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191 (305)
Q Consensus 116 ~a~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 191 (305)
.+..+.+.+.+ ...+..+..+|-+.|+.++|.++|+++.+.. .-|....|.+...|... ++++|.+++.+.++.
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 55555555544 3456678888888899999999999888765 33677788888888888 888888888877654
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-----------------------CchhhHHHHHHHHHhcCChHHHH
Q 036263 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----------------------RTLVSWNSIIVGFAVNGFVGEAL 248 (305)
Q Consensus 192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~ 248 (305)
|...+++.++.++|.++.. .-+.++-.+...|-..++|+++.
T Consensus 179 ---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 179 ---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred ---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 3333344444444444331 23445666677788888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036263 249 EYFNLMQKGVFKTDEVSFTGALTACS 274 (305)
Q Consensus 249 ~~~~~m~~~g~~p~~~~~~~li~~~~ 274 (305)
.+++...+.. +-|.....-++.+|.
T Consensus 244 ~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 9999998864 235566777777765
No 91
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=6.9e-05 Score=63.48 Aligned_cols=201 Identities=11% Similarity=0.040 Sum_probs=138.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-
Q 036263 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG- 126 (305)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 126 (305)
|--+-..|....+.++.+..|+...+- .| -++.+|..-.....-.+++++|..=|+...+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~l--dp-----------------~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDL--DP-----------------ENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhc--CC-----------------CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444555566666666666655542 22 2333444444445556788999999988865
Q ss_pred ----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCC-----CC-
Q 036263 127 ----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-----DN- 196 (305)
Q Consensus 127 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~- 196 (305)
...|-.+--+.-+.+++++++..|++.+++ ++-....|+.....+...++++.|.+.|+..++..-. .+
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 344555666667888999999999998775 5556788999999999999999999999988765311 12
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhcccCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036263 197 -VRVCNTLMDVYSRFGCIEFARQVFQRMHKRT---LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272 (305)
Q Consensus 197 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 272 (305)
+.+.-.++..--+ +++..|..++.+..+-| ...|..|...-.+.|+.++|+++|++-... ..|-.-++++
T Consensus 503 ~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l-----Art~~E~~~a 576 (606)
T KOG0547|consen 503 APLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL-----ARTESEMVHA 576 (606)
T ss_pred hhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHhHHHHHHH
Confidence 2222233332233 88999999999988644 467899999999999999999999986542 2444455555
Q ss_pred Hh
Q 036263 273 CS 274 (305)
Q Consensus 273 ~~ 274 (305)
|.
T Consensus 577 ~s 578 (606)
T KOG0547|consen 577 YS 578 (606)
T ss_pred HH
Confidence 43
No 92
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.33 E-value=6.9e-07 Score=46.41 Aligned_cols=31 Identities=39% Similarity=0.476 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGT 76 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 76 (305)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999874
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.31 E-value=0.0001 Score=58.82 Aligned_cols=180 Identities=14% Similarity=0.017 Sum_probs=116.5
Q ss_pred CCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF 121 (305)
Q Consensus 42 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 121 (305)
......+-.....+.+.|++++|...|++.... .|+.... ...+..+..++.+.|++++|...+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~--------------~~a~~~la~~~~~~~~~~~A~~~~ 93 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYA--------------EQAQLDLAYAYYKSGDYAEAIAAA 93 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhH--------------HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 346667778888899999999999999998763 3432111 122344566678889999999999
Q ss_pred HhcCc-----cc---cHHHHHHHHHcC--------CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCcCChhHHHHH
Q 036263 122 DVMRG-----CD---FWTALLNGFVKR--------DYFEEALEYFRVMQISGVEPDY-LTIISVLNVCANVRTLGIGLWM 184 (305)
Q Consensus 122 ~~~~~-----~~---~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~ 184 (305)
+.+.+ .. .+..+..++... |+.++|.+.|+..... .|+. .....+.... . .
T Consensus 94 ~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---------~ 161 (235)
T TIGR03302 94 DRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---------L 161 (235)
T ss_pred HHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---------H
Confidence 88743 11 244444444443 6677778887777654 3432 1221111100 0 0
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C----chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R----TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
.... ......+...|.+.|++++|...+++..+ | ....+..+..++...|++++|..+++.+...
T Consensus 162 ~~~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 162 RNRL--------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHH--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0000 01122456678899999999999998863 2 2467889999999999999999999888764
No 94
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.28 E-value=0.00034 Score=64.13 Aligned_cols=181 Identities=13% Similarity=0.023 Sum_probs=135.8
Q ss_pred HHHHHHHHHhcCChHHH-HHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChh
Q 036263 101 STALLDMYAKFGRMDLA-TVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLG 179 (305)
Q Consensus 101 ~~~ll~~~~~~g~~~~a-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 179 (305)
.+.+=.+.+..|.-++| .+++++..+ ++....+.....+++.-..... +....+...+..|.......|..+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~La~i~~~~g~~~ 103 (694)
T PRK15179 31 LDLLEAALAEPGESEEAGRELLQQARQ------VLERHAAVHKPAAALPELLDYV-RRYPHTELFQVLVARALEAAHRSD 103 (694)
T ss_pred HhHHHHHhcCcccchhHHHHHHHHHHH------HHHHhhhhcchHhhHHHHHHHH-HhccccHHHHHHHHHHHHHcCCcH
Confidence 33444456666776665 455555432 3333333333333332222222 224556888999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
+|..+++...+.. +-+......+...+.+.+++++|....++... | +......+..++...|++++|.++|++...
T Consensus 104 ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 104 EGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 9999999999874 45577788899999999999999999999985 3 556777788889999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 257 GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 257 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+ +-+..++..+-.++-+.|+.++|...|+...
T Consensus 183 ~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 183 QH-PEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 2347888899999999999999999999886
No 95
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.28 E-value=0.0003 Score=55.02 Aligned_cols=150 Identities=11% Similarity=0.048 Sum_probs=81.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213 (305)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (305)
-..+...|+-+....+....... ..-|............+.|++..|...+++..... ++|...|+.+.-+|.+.|++
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence 33444445555544444432211 11133334445556666666666666666665554 55666666666666666666
Q ss_pred HHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036263 214 EFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286 (305)
Q Consensus 214 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 286 (305)
++|..-|.+..+ .+....|.+.-.+.-.|+.+.|..++......+. -|...-..+.......|++++|..+-
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666665553 2445556666666666666666666666555432 13444444555555666666665543
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.27 E-value=3.4e-05 Score=56.43 Aligned_cols=109 Identities=11% Similarity=0.012 Sum_probs=77.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--
Q 036263 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-- 225 (305)
Q Consensus 148 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-- 225 (305)
.++++..+ +.|+. +.....++...|++++|...|+...... +.+...|..+..++.+.|++++|...|++...
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444433 34443 4445666777888888888888877765 55677778888888888888888888888774
Q ss_pred -CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036263 226 -RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263 (305)
Q Consensus 226 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 263 (305)
.+...+..+..++...|++++|...|+...+. .|+.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~ 125 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYAD 125 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 25577777778888888888888888887773 4544
No 97
>PLN02789 farnesyltranstransferase
Probab=98.25 E-value=0.0018 Score=53.93 Aligned_cols=222 Identities=10% Similarity=-0.076 Sum_probs=154.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhc
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFG-RMDLATVVFDVM 124 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~ 124 (305)
.+++.+-..+...++.++|+.+++++.+ +.|+..+. |+..-.++.+.| ++++++..++.+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~yta-----------------W~~R~~iL~~L~~~l~eeL~~~~~~ 98 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIR--LNPGNYTV-----------------WHFRRLCLEALDADLEEELDFAEDV 98 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHH-----------------HHHHHHHHHHcchhHHHHHHHHHHH
Confidence 3566666777778899999999999886 45554322 333334455556 578899888877
Q ss_pred Cc-----cccHHHHHHHHHcCCCh--HHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC
Q 036263 125 RG-----CDFWTALLNGFVKRDYF--EEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196 (305)
Q Consensus 125 ~~-----~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (305)
.. ..+|+.-...+.+.|+. ++++.+++.+.+. .| +..+|+....++...|+++++.+.++++++.+ +-+
T Consensus 99 i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N 175 (320)
T PLN02789 99 AEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRN 175 (320)
T ss_pred HHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCc
Confidence 43 34566555555566653 6788888888764 44 67888888888888999999999999999987 456
Q ss_pred hhHHHHHHHHHHhc---CCh----HHHHHHHHhcc--cC-chhhHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCC
Q 036263 197 VRVCNTLMDVYSRF---GCI----EFARQVFQRMH--KR-TLVSWNSIIVGFAVN----GFVGEALEYFNLMQKGVFKTD 262 (305)
Q Consensus 197 ~~~~~~li~~~~~~---g~~----~~a~~~~~~~~--~~-~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~ 262 (305)
...|+.....+.+. |.. +++.....++. .| |...|+-+...+... ++..+|.+++.+....+ ..+
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s 254 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNH 254 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCc
Confidence 66777666555544 222 35566654544 23 677888888888773 44567888888876643 346
Q ss_pred HHHHHHHHHHHhccC------------------cHHHHHHHHHHHH
Q 036263 263 EVSFTGALTACSHAG------------------LIEDGLQYFDIMK 290 (305)
Q Consensus 263 ~~~~~~li~~~~~~g------------------~~~~a~~~~~~m~ 290 (305)
...+..|+..|+... ..++|.++++.+.
T Consensus 255 ~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 255 VFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 678888888887632 3467888888774
No 98
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.25 E-value=2.1e-05 Score=67.05 Aligned_cols=121 Identities=12% Similarity=0.031 Sum_probs=100.9
Q ss_pred hcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 036263 90 CADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161 (305)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 161 (305)
+.+.+..+......+++.+....+++.+..++.+.+. ..+..++|+.|.+.|..+.++.+++.=...|+-||
T Consensus 58 ~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 58 FERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred HhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 3333334445556666667777888999998887754 55678999999999999999999999889999999
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 210 (305)
..|++.||+.+.+.|++..|.++...|...+...+..|+.-.+.+|.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999998888777888887777777665
No 99
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.23 E-value=1.7e-06 Score=44.92 Aligned_cols=30 Identities=37% Similarity=0.574 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036263 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259 (305)
Q Consensus 230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 259 (305)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00015 Score=66.68 Aligned_cols=220 Identities=11% Similarity=0.046 Sum_probs=144.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC--------CChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263 51 SISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------NNVMVSTALLDMYAKFGRMDLATVVFD 122 (305)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~ 122 (305)
+...+...+-+++|..+|++. ..+......++.-...... -...+|+-+..+..+.|.+.+|.+-|-
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 344556677788888888875 3344444444443322222 456788888888888888888888888
Q ss_pred hcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHH
Q 036263 123 VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT 202 (305)
Q Consensus 123 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 202 (305)
+..+...|..++....+.|.|++-.+++...++..-+|... +.|+-+|++.++..+.++++ ..|+......
T Consensus 1129 kadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~ 1199 (1666)
T KOG0985|consen 1129 KADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQ 1199 (1666)
T ss_pred hcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHH
Confidence 88888888889999999999998888887777766666543 46778888888887766654 2355555555
Q ss_pred HHHHHHhcCChHHHHHHHHhccc------------------------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036263 203 LMDVYSRFGCIEFARQVFQRMHK------------------------RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258 (305)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 258 (305)
+.+-|...|.++.|.-+|..... .+..+|-.+-.+|...+.+.-| +|-..+
T Consensus 1200 vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~ 1274 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLN 1274 (1666)
T ss_pred HhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCce
Confidence 55556666666665555544331 1344555555555544433322 233333
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289 (305)
Q Consensus 259 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 289 (305)
+.....-..-++..|...|-+++.+.+++.-
T Consensus 1275 iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1275 IIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred EEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 4445566777888888888888887776643
No 101
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.22 E-value=6.5e-05 Score=54.24 Aligned_cols=106 Identities=11% Similarity=-0.012 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHH
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGF 238 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 238 (305)
......+...+...|+.++|.+.++.+...+ +.+...+..+...+.+.|++++|...+++..+ .+...+..+...|
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3445566667777888888888888877765 55677777788888888888888888877753 2456666677778
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036263 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270 (305)
Q Consensus 239 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 270 (305)
...|++++|...|++..+. .|+...+..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 125 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEYSELK 125 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchHHHHH
Confidence 8888888888888877773 45555544433
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=9.6e-05 Score=63.78 Aligned_cols=179 Identities=16% Similarity=0.146 Sum_probs=131.5
Q ss_pred HHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHH
Q 036263 108 YAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIG 181 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a 181 (305)
+.+.|++.+|.-.|+.... ...|--|.......++-..|+..+++..+ +.|+ ....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHHH
Confidence 5678889999988888754 55677788888888888888888777665 4563 44444444444444444344
Q ss_pred HHHHHHH------------------------------------------hhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263 182 LWMHRYV------------------------------------------PKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219 (305)
Q Consensus 182 ~~~~~~~------------------------------------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 219 (305)
...++.. ...+..+|..++..|.-.|--.|++++|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 3333332 2333346777888888888889999999999
Q ss_pred HHhcc--cC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 220 FQRMH--KR-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE-VSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 220 ~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
|+... +| |..+||.|...++...+.++|+..|++..+ ++|+- ....-|..+|...|.+++|.+.|-...
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99987 34 778999999999999999999999999998 66765 334455677889999999988877655
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.00014 Score=56.80 Aligned_cols=149 Identities=12% Similarity=-0.005 Sum_probs=120.3
Q ss_pred HHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhH
Q 036263 106 DMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI 180 (305)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 180 (305)
..+.-.|+-+....+...... ....+.++....+.|++..|...|++.... -++|..+|+.+--+|-+.|+++.
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhH
Confidence 335555776766666665422 234555888999999999999999997653 36689999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
|..-|.+..+.. +-+...++.+.-.|.-.|+.+.|..++..... .|...-..+.......|++++|..+...-..
T Consensus 153 Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 153 ARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 999999998875 55677889999999999999999999988762 3778888888999999999999988765433
No 104
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.00096 Score=55.71 Aligned_cols=156 Identities=10% Similarity=-0.073 Sum_probs=89.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCccccH-----HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036263 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFW-----TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN 170 (305)
Q Consensus 96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 170 (305)
-++.....+..++...|+.++|+..|++......| ....-.+.+.|+++....+...+.... +-....|-.-..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 33444555555555556666666666555442222 112223344555555555554443321 122222323333
Q ss_pred HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHH
Q 036263 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEA 247 (305)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a 247 (305)
.+...++++.|..+-++.++.+ +-+...|-.-...+...|+.++|.-.|+.... | +..+|.-|+.+|...|++.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 3345566666666666665544 33444555555677788899998888887763 3 778999999999999988888
Q ss_pred HHHHHH
Q 036263 248 LEYFNL 253 (305)
Q Consensus 248 ~~~~~~ 253 (305)
...-+.
T Consensus 388 ~~~An~ 393 (564)
T KOG1174|consen 388 NALANW 393 (564)
T ss_pred HHHHHH
Confidence 765544
No 105
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=7.3e-05 Score=54.00 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=88.5
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036263 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260 (305)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 260 (305)
.++...+.. +.+......+...+...|++++|.+.|+.+.. .+...|..+...+...|++++|..+++...+.+ +
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 344555443 33456677788889999999999999999864 366788889999999999999999999988764 3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCcc
Q 036263 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIE 300 (305)
Q Consensus 261 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 300 (305)
.+...+..+...+...|+++.|...|+... .+.|+..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~ 119 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAI---EICGENP 119 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHH---Hhccccc
Confidence 456777788889999999999999999888 3445543
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.15 E-value=4.9e-05 Score=55.57 Aligned_cols=110 Identities=7% Similarity=-0.119 Sum_probs=89.0
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036263 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 258 (305)
+.++++..+.+ |+ .+......+...|++++|...|+.... .+...|..+..++...|++++|...|++....+
T Consensus 13 ~~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34455554432 43 355678888999999999999999874 367889999999999999999999999999853
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263 259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 259 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
+.+...+..+..++...|++++|...|+... .+.|+.
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al---~~~p~~ 125 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAI---KMSYAD 125 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCC
Confidence 3477888899999999999999999999987 455554
No 107
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.13 E-value=3.2e-05 Score=52.33 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCcC--------ChhHHHHHHHHHhhcCCCCChhHHH
Q 036263 131 TALLNGFVKRDYFEEALEYFRVMQISGV-EPDYLTIISVLNVCANVR--------TLGIGLWMHRYVPKQDFKDNVRVCN 201 (305)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 201 (305)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-....+++.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666777999999999999999999 999999999999887653 2345678899999999999999999
Q ss_pred HHHHHHHh
Q 036263 202 TLMDVYSR 209 (305)
Q Consensus 202 ~li~~~~~ 209 (305)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99998765
No 108
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00054 Score=59.55 Aligned_cols=211 Identities=11% Similarity=0.053 Sum_probs=129.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCccccH
Q 036263 51 SISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFW 130 (305)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 130 (305)
=+.-+...|++++|+...+++...+ ||..+- +..=+-++.+.+++++|+.+.+.-....++
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a-----------------~~cKvValIq~~ky~~ALk~ikk~~~~~~~ 78 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV--PDDEDA-----------------IRCKVVALIQLDKYEDALKLIKKNGALLVI 78 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC--CCcHhh-----------------HhhhHhhhhhhhHHHHHHHHHHhcchhhhc
Confidence 3566778899999999999998764 543221 122233467789999999877776654444
Q ss_pred HHH----HHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC-hhHHHHHH
Q 036263 131 TAL----LNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN-VRVCNTLM 204 (305)
Q Consensus 131 ~~l----i~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li 204 (305)
+.. ..+..+.++.++|+..++ |..++ ..+...-...+.+.|++++|..+|+.+.+.+.+.- ...-..++
T Consensus 79 ~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 79 NSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred chhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 444 445567899999998887 44443 33556666778899999999999999988763321 11111111
Q ss_pred HHHHhcCChHHHHHHHHhcccCchhhHHHH---HHHHHhcCChHHHHHHHHHHHHC-------C------CCCCHH-HHH
Q 036263 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSI---IVGFAVNGFVGEALEYFNLMQKG-------V------FKTDEV-SFT 267 (305)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~-------g------~~p~~~-~~~ 267 (305)
.+ +-...+. +.+........+|..+ ...++..|++.+|+++++...+- + +.-... +-.
T Consensus 154 a~----~a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 154 AV----AAALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred HH----HHhhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 11 1112222 3444443333344443 34566788888888888876211 1 111111 122
Q ss_pred HHHHHHhccCcHHHHHHHHHHHH
Q 036263 268 GALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 268 ~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+.-++...|+.++|.+++....
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH
Confidence 33445567788888888888776
No 109
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0011 Score=52.07 Aligned_cols=148 Identities=11% Similarity=0.057 Sum_probs=112.0
Q ss_pred HHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh----cCcCChhH
Q 036263 105 LDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC----ANVRTLGI 180 (305)
Q Consensus 105 l~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~ 180 (305)
...|++.|++++|++..+..........=+..+.+..+.+.|.+.++.|.+- -+..|.+-|..++ ...+...+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhh
Confidence 4458889999999999998665555555567778888999999999999863 3456666555554 45567899
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChH-HHHHHHHHHHH
Q 036263 181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVG-EALEYFNLMQK 256 (305)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~ 256 (305)
|.-+|++|-+. .+|++.+.+....++...|++++|..++++.... +..+...+|..-...|..+ ...+.+..++.
T Consensus 192 AfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 192 AFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999875 4899999999999999999999999999999853 4555555555555555544 44455666665
No 110
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.0017 Score=55.33 Aligned_cols=181 Identities=12% Similarity=0.046 Sum_probs=122.2
Q ss_pred CCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHH
Q 036263 39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLAT 118 (305)
Q Consensus 39 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 118 (305)
....|+...+...+.+......-..+..++..-.+. .-...-|...+. +...|+.++|+
T Consensus 268 ~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-------------------~~~~~~~d~A~ 326 (484)
T COG4783 268 KLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-------------------TYLAGQYDEAL 326 (484)
T ss_pred CCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-------------------HHHhcccchHH
Confidence 334566677777777666554444444444333221 112223333332 34568888888
Q ss_pred HHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263 119 VVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192 (305)
Q Consensus 119 ~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 192 (305)
..++.+.. ...+......+.+.++.++|.+.++.+... .|+ ....-.+-.++.+.|++.+|..+++......
T Consensus 327 ~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 327 KLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 88877643 333455567788888888888888887764 665 4455566778888888888888888877765
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
+.|+..|..|.++|...|+..++..-. ..+|...|+++.|...+....+.
T Consensus 405 -p~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 405 -PEDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -CCCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 777888888888888888888777653 34567788888888888887765
No 111
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=0.00014 Score=61.81 Aligned_cols=120 Identities=13% Similarity=0.033 Sum_probs=92.5
Q ss_pred HHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhc
Q 036263 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVN 241 (305)
Q Consensus 165 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~ 241 (305)
...|+..+...++++.|..+++++.+.. |+ ....+.+.+...++-.+|.+++++..+. +......-...|.+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 4456666777788999999999988775 44 3445777777888888888888887753 444555556668889
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 242 GFVGEALEYFNLMQKGVFKTDE-VSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 242 g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
++++.|.++.+++.+ ..|+. .+|..|..+|.+.|+++.|+..++.+-
T Consensus 248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999888 45655 588899999999999999998887654
No 112
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=0.0002 Score=60.85 Aligned_cols=125 Identities=13% Similarity=0.084 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCc--cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc
Q 036263 98 VMVSTALLDMYAKFGRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175 (305)
Q Consensus 98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 175 (305)
-....+|+..+...++++.|..+|+++.. ..+...++..+...++-.+|.+++++.... .+-+......-...|.+.
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 34456667777777889999999998865 555666778888888888888888887754 233566666667778888
Q ss_pred CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
++.+.|..+.+++.+.. +.+-.+|..|..+|.+.|+++.|...+..++
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 89999999999888874 4455688999999999999999998888876
No 113
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=0.003 Score=53.91 Aligned_cols=115 Identities=14% Similarity=0.074 Sum_probs=71.5
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 036263 137 FVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215 (305)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 215 (305)
+...|++++|+..++.+... .|+ ..-.......+.+.++..+|.+.++.+.... +......-.+.++|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 33456677777777776553 443 3344455556667777777777777776653 2225555666667777777777
Q ss_pred HHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263 216 ARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLM 254 (305)
Q Consensus 216 a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 254 (305)
|.+++++... .|...|..|..+|...|+..++..-..++
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 7777766653 25566777777777777766666554443
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.06 E-value=0.0056 Score=53.00 Aligned_cols=148 Identities=14% Similarity=0.057 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 143 FEEALEYFRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYSRFGCIEFARQVF 220 (305)
Q Consensus 143 ~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~ 220 (305)
.+.....++++... .++| .-+|-..|+.-.+..-+..|..+|.+..+.+..+ ++.++++++..||. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 33344444444332 2233 3367777888888888999999999999988777 78888888888776 5678899999
Q ss_pred Hhccc--Cchhh-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 036263 221 QRMHK--RTLVS-WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE--VSFTGALTACSHAGLIEDGLQYFDIMKKI 292 (305)
Q Consensus 221 ~~~~~--~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (305)
+--.+ +|... -...+.-+...++-..|..+|++....++.||. .+|..+|..=+.-|+...+.++-+.+...
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 87654 34443 355677778888999999999999888766655 78999999999999999999988877633
No 115
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00046 Score=50.52 Aligned_cols=113 Identities=8% Similarity=-0.073 Sum_probs=53.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChH
Q 036263 140 RDYFEEALEYFRVMQISGVEPD---YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN--VRVCNTLMDVYSRFGCIE 214 (305)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~ 214 (305)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+........++ ....-.+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555555555555555431 111 11222233445555666666666666555441121 112333445555555555
Q ss_pred HHHHHHHhcccC--chhhHHHHHHHHHhcCChHHHHHHHHH
Q 036263 215 FARQVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYFNL 253 (305)
Q Consensus 215 ~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 253 (305)
+|...++....+ ....+......|.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555554322 222333444555555555555555543
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.04 E-value=0.00059 Score=63.58 Aligned_cols=180 Identities=11% Similarity=-0.005 Sum_probs=126.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHH------------------HHH
Q 036263 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEY------------------FRV 152 (305)
Q Consensus 96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~------------------~~~ 152 (305)
.+...+..|+..+...+++++|.++.+.... ...|-.+...+.+.++..++..+ ...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHH
Confidence 3455678888889999999999999886643 33344444455555555555444 222
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHH
Q 036263 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN 232 (305)
Q Consensus 153 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 232 (305)
|... .-+...+..+..+|-+.|+.+++..+++++.+.+ +-|+.+.|.+...|... ++++|.+++.+....
T Consensus 109 i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------ 178 (906)
T PRK14720 109 ILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------ 178 (906)
T ss_pred HHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------
Confidence 2221 1122566777888888999999999999999998 77899999999999999 999999998776532
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC-------------------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 233 SIIVGFAVNGFVGEALEYFNLMQKG-------------------VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 233 ~li~~~~~~g~~~~a~~~~~~m~~~-------------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
|...+++.++.++|.++... |..--..++-.+...|-..++|+++..+++.+.
T Consensus 179 -----~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL 250 (906)
T PRK14720 179 -----FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL 250 (906)
T ss_pred -----HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 45555555555555555543 222333455556677888889999999999887
No 117
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.03 E-value=0.00035 Score=51.21 Aligned_cols=123 Identities=8% Similarity=-0.031 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhccc--Cch----hhHHH
Q 036263 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---VRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTL----VSWNS 233 (305)
Q Consensus 163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~ 233 (305)
..|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.... ++. ...-.
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4566666665 4888889999999998864 333 23344466788999999999999999884 222 24445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289 (305)
Q Consensus 234 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 289 (305)
+...+...|++++|...++...... .....+...-..+.+.|++++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6788899999999999997754433 34456667778999999999999999853
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0039 Score=48.83 Aligned_cols=181 Identities=14% Similarity=0.063 Sum_probs=126.2
Q ss_pred cCChhHHHHHHHHHHhC---C-CCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc--cccHH
Q 036263 58 SGCILEAALEFTRMRLY---G-TNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--CDFWT 131 (305)
Q Consensus 58 ~~~~~~a~~~~~~m~~~---g-~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~ 131 (305)
..+.++.++++.++... | ..|+..+. |.-++-+....|+.+.|..+++++.+ ..++.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l-----------------~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~R 87 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTL-----------------YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKR 87 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHH-----------------HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChh
Confidence 46778888888887753 3 45554433 34444556677999999999988755 33322
Q ss_pred HHH---HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263 132 ALL---NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208 (305)
Q Consensus 132 ~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (305)
... --+-..|.+++|+++++.+.+.. +-|..++--=+...-..|+--+|.+-+....+. +..|...|.-+-..|.
T Consensus 88 V~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 88 VGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYL 165 (289)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 221 22445788999999999998875 335666665555566666666777766666655 5789999999999999
Q ss_pred hcCChHHHHHHHHhcc--cCch-hhHHHHHHHHHhc---CChHHHHHHHHHHHHC
Q 036263 209 RFGCIEFARQVFQRMH--KRTL-VSWNSIIVGFAVN---GFVGEALEYFNLMQKG 257 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~--~~~~-~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 257 (305)
..|++++|.-.++++. .|.. ..+..+...+... .+.+.+.++|.+..+-
T Consensus 166 ~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 166 SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999987 5633 3444455544333 3567788888888774
No 119
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.01 E-value=0.0031 Score=60.81 Aligned_cols=190 Identities=9% Similarity=-0.030 Sum_probs=124.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCc----c---------ccHHHHHHHHHcCCChHHHHHHHHHHHHc--CCCC--CHH
Q 036263 101 STALLDMYAKFGRMDLATVVFDVMRG----C---------DFWTALLNGFVKRDYFEEALEYFRVMQIS--GVEP--DYL 163 (305)
Q Consensus 101 ~~~ll~~~~~~g~~~~a~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p--~~~ 163 (305)
...+...+...|+++.|...+++... . ..+..+...+...|++++|...+.+.... ...+ ...
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 34556667788999999988876533 0 11334445667779999999888876442 1112 233
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHhhcC--CCCChh--H--HHHHHHHHHhcCChHHHHHHHHhcccCch-------hh
Q 036263 164 TIISVLNVCANVRTLGIGLWMHRYVPKQD--FKDNVR--V--CNTLMDVYSRFGCIEFARQVFQRMHKRTL-------VS 230 (305)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~ 230 (305)
.+..+...+...|+.++|...++...... ...... . ....+..+...|+.+.|.+.+.....+.. ..
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 44445566778899999998888775421 111110 1 01123445567899999999877664321 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 231 WNSIIVGFAVNGFVGEALEYFNLMQKG----VFKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 231 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+..+..++...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677788999999999999887553 33332 2456666678889999999999999887
No 120
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0012 Score=54.00 Aligned_cols=190 Identities=15% Similarity=0.089 Sum_probs=117.1
Q ss_pred HHHhcCChHHHHHHHHhcCccccHHHHHHHHH--cCC-------ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCcC
Q 036263 107 MYAKFGRMDLATVVFDVMRGCDFWTALLNGFV--KRD-------YFEEALEYFRVMQISGVEPDY-LTIISVLNVCANVR 176 (305)
Q Consensus 107 ~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~--~~g-------~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~ 176 (305)
-|.+.+++.+|..+..++..+..|.-++.+.. ..| ..+-|.+.|+..-+++.+-|. ..-.++..++.-..
T Consensus 294 YyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~ 373 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSF 373 (557)
T ss_pred eecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHH
Confidence 34555666666666655554444444433321 122 233444444433333333321 22334444445555
Q ss_pred ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHH-HHHHHhcCChHHHHHHHH
Q 036263 177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSI-IVGFAVNGFVGEALEYFN 252 (305)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l-i~~~~~~g~~~~a~~~~~ 252 (305)
+++++.-.+......-...|.. --.+.++++..|.+.+|+++|-++..| |..+|-++ .++|.++++++.|++++-
T Consensus 374 qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 374 QFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 6666666666665543223333 334678889999999999999998865 56677654 678899999999988876
Q ss_pred HHHHCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHHHHHhCCCCCccccc
Q 036263 253 LMQKGVFKTDEVSFTGA-LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303 (305)
Q Consensus 253 ~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 303 (305)
++.. +.+..+.-.+ .+-|-+.+.+--|-+.|+.++ ...|+++.|.
T Consensus 453 k~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnWe 498 (557)
T KOG3785|consen 453 KTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENWE 498 (557)
T ss_pred hcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCccccC
Confidence 6544 2344444444 457889999999999999998 6778887663
No 121
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.99 E-value=0.00019 Score=48.62 Aligned_cols=89 Identities=11% Similarity=0.127 Sum_probs=68.1
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHhhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcC
Q 036263 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG 242 (305)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 242 (305)
|-..-|..|...+++.....+|+.+.+.|+ .|+..+|+.++.+.++..--..+ -.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~-----------------------ie~ 83 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSED-----------------------IEN 83 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchh-----------------------HHH
Confidence 334556667777999999999999999998 88999999998887664322111 122
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263 243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275 (305)
Q Consensus 243 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 275 (305)
+....+.+|++|...+++|+..||+.++..+.+
T Consensus 84 kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 84 KLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 456778889999999999999999999988765
No 122
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.98 E-value=0.0068 Score=50.40 Aligned_cols=107 Identities=8% Similarity=0.034 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcC
Q 036263 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG 242 (305)
Q Consensus 163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 242 (305)
.+.+..|.-|...|+...|.++-.+. + .|+..-|...+.+|++.++|++-.++... +.++..|..++.+|.+.|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCC
Confidence 34555566677788887777775554 3 47888899999999999999988887654 456788999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036263 243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285 (305)
Q Consensus 243 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 285 (305)
+..+|..+..+ ++ +..-+..|.+.|++.+|.+.
T Consensus 252 ~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHH
Confidence 99999988877 21 13456667777887777654
No 123
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.97 E-value=0.00029 Score=60.32 Aligned_cols=120 Identities=12% Similarity=-0.037 Sum_probs=81.7
Q ss_pred CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc----Cchhh
Q 036263 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD--FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----RTLVS 230 (305)
Q Consensus 157 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~ 230 (305)
+.+.+......+++.+....+++.+..++-..+... ...-..|..++|+.|.+.|..+++..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 344566677777777777777777777777766542 222234445777777777777777777766553 67777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036263 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276 (305)
Q Consensus 231 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 276 (305)
+|.|+..+.+.|++..|.++...|..++...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776666666666666666665554
No 124
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.97 E-value=0.00089 Score=59.91 Aligned_cols=160 Identities=9% Similarity=0.086 Sum_probs=79.0
Q ss_pred hcCChHHHHHHHHhcCc----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHH
Q 036263 110 KFGRMDLATVVFDVMRG----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185 (305)
Q Consensus 110 ~~g~~~~a~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 185 (305)
....|.+|+.+++.+.+ ..-|..+...|...|+++.|.++|.+- ..++-.|..|.+.|+|+.|.++-
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHH
Confidence 33445555555554443 222445555555555555555555331 12344455556666665555554
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036263 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265 (305)
Q Consensus 186 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 265 (305)
.+.. |.......|-+-..-+-+.|++.+|+++|-.+..|+. .|..|-+.|..+..+.+.++-...- =..|
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt 884 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDT 884 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHH
Confidence 3332 2123334444444455555666666666555555543 3455566666666555554422111 1134
Q ss_pred HHHHHHHHhccCcHHHHHHHHHH
Q 036263 266 FTGALTACSHAGLIEDGLQYFDI 288 (305)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~~~ 288 (305)
...+..-+...|+.+.|.+-|-+
T Consensus 885 ~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 885 HKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred HHHHHHHHHhccChhHHHHHHHh
Confidence 44455555555666666555443
No 125
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.96 E-value=0.006 Score=49.95 Aligned_cols=170 Identities=10% Similarity=-0.013 Sum_probs=107.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHh---hcCCCC-----CCh--------hHHHH---HHHHHH
Q 036263 49 TSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG---CADFPS-----NNV--------MVSTA---LLDMYA 109 (305)
Q Consensus 49 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~-----~~~--------~~~~~---ll~~~~ 109 (305)
--+-..+...|++..|+.-|....+ -|+..|..+.+- |...|. +|. ..+.+ -...+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 3455667778888888888887754 344455554432 222222 111 11111 124677
Q ss_pred hcCChHHHHHHHHhcCc--------------------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036263 110 KFGRMDLATVVFDVMRG--------------------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169 (305)
Q Consensus 110 ~~g~~~~a~~~~~~~~~--------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 169 (305)
+.|.++.|..-|+.+.+ .......+..+...|+...|+.....+.+-. +.|...|..-.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHH
Confidence 88999999999988854 0113344556667899999999999888742 34888888888
Q ss_pred HHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
.+|...|.+..|..=++...+.. ..+...+--+-..+...|+.+.++...++..
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 88999999988877777666554 3344444445555566666666665555544
No 126
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.95 E-value=0.0035 Score=50.16 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=46.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 233 SIIVGFAVNGFVGEALEYFNLMQKG--VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 233 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+.+-|.+.|.+..|..-++.+.+. +.+........++.+|.+.|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4456688999999999999999875 344455677788899999999999999887665
No 127
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.91 E-value=0.0012 Score=58.78 Aligned_cols=184 Identities=13% Similarity=0.092 Sum_probs=148.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc
Q 036263 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175 (305)
Q Consensus 96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 175 (305)
|-...-..+...+.+.|-...|..+|++. ..|..+|.+|...|+.++|..+..+-.+ -+||..-|..+.+.....
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl---emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL---EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH---HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 33445566778888999999999999986 4699999999999999999999988776 378999999999998888
Q ss_pred CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHH
Q 036263 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFN 252 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~ 252 (305)
.-++.|.++.+....+ .-..+.......++++++.+.|+.-.+- -..+|-.+-.+..+.+++..|.+.|.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 8899999998765432 1122222223478999999999876642 55788888888999999999999999
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHHhC
Q 036263 253 LMQKGVFKTDE-VSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294 (305)
Q Consensus 253 ~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 294 (305)
.-.. ..||. ..|+.+-.+|.+.|+-.+|...+++.. +..
T Consensus 544 rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl-Kcn 583 (777)
T KOG1128|consen 544 RCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL-KCN 583 (777)
T ss_pred HHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh-hcC
Confidence 9888 45654 789999999999999999999999988 544
No 128
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.0013 Score=57.11 Aligned_cols=229 Identities=14% Similarity=0.053 Sum_probs=155.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHH----------------HHHhhcCCCCCChhHHHHHHHHHHhcCChHH
Q 036263 54 RHCRSGCILEAALEFTRMRLYGTNPS-HITFVT----------------LLSGCADFPSNNVMVSTALLDMYAKFGRMDL 116 (305)
Q Consensus 54 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 116 (305)
.+.+.|++.+|.-+|+..+.. .|. ...|-- .+.-|.+....+....-+|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 456788899999999988764 332 222222 2233333333566677777777777787777
Q ss_pred HHHHHHhcCc-cccHHHHHH-----------HHHcCCChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHhcCcCChhHHHH
Q 036263 117 ATVVFDVMRG-CDFWTALLN-----------GFVKRDYFEEALEYFRVM-QISGVEPDYLTIISVLNVCANVRTLGIGLW 183 (305)
Q Consensus 117 a~~~~~~~~~-~~~~~~li~-----------~~~~~g~~~~a~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 183 (305)
|...++.-.. ...|--+.. .+.....+....++|-++ ...+..+|......|--.|--.|.+++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 7777765522 111111111 112222344555566555 444545777778888888889999999999
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc-hhhHHHHHHHHHhcCChHHHHHHHHHH---HHC
Q 036263 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT-LVSWNSIIVGFAVNGFVGEALEYFNLM---QKG 257 (305)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m---~~~ 257 (305)
.|+.....+ +-|..+||-|.-.+....+..+|+.-|++..+ |+ +.....|.-+|...|.+++|.+.|-.. .+.
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999876 67789999999999999999999999999984 53 467777888999999999999987664 333
Q ss_pred ------CCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036263 258 ------VFKTDEVSFTGALTACSHAGLIEDGLQY 285 (305)
Q Consensus 258 ------g~~p~~~~~~~li~~~~~~g~~~~a~~~ 285 (305)
+..++...|..|=.++.-.++.|.+.+.
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1223445677766677777777755544
No 129
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.91 E-value=0.00032 Score=53.60 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=77.6
Q ss_pred cccHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc----------------CChhHHHHHH
Q 036263 127 CDFWTALLNGFVK-----RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV----------------RTLGIGLWMH 185 (305)
Q Consensus 127 ~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~~~~ 185 (305)
..+|..++..+.+ .|..+-....++.|.+-|+.-|..+|+.|++.+-+. .+.+-|.+++
T Consensus 47 K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL 126 (228)
T PF06239_consen 47 KATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLL 126 (228)
T ss_pred HHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHH
Confidence 5566667766654 477888888999999999999999999999998653 2346789999
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhcc
Q 036263 186 RYVPKQDFKDNVRVCNTLMDVYSRFGC-IEFARQVFQRMH 224 (305)
Q Consensus 186 ~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~ 224 (305)
++|+..|+-||..++..+++.+++.+. ..+..++.-.|.
T Consensus 127 ~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 127 EQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999999999999987665 334444444443
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0066 Score=47.56 Aligned_cols=174 Identities=7% Similarity=0.027 Sum_probs=127.1
Q ss_pred CChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHhcCcCChh
Q 036263 112 GRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL-NVCANVRTLG 179 (305)
Q Consensus 112 g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~ 179 (305)
.+.++..+++..+.. -..|..++-+....|+.+.|...++++..+ + |.+.-...+= --+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 345555555555533 112555667777889999999999998876 3 5433322222 2234678999
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
+|.++++.+.+.+ +.|..++---+-..-..|+--+|.+-+.+..+ .|...|.-+-..|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999999987 77888888777777788888888888887775 4889999999999999999999999999988
Q ss_pred CCCCC-CHHHHHHHHHHHhccC---cHHHHHHHHHHHH
Q 036263 257 GVFKT-DEVSFTGALTACSHAG---LIEDGLQYFDIMK 290 (305)
Q Consensus 257 ~g~~p-~~~~~~~li~~~~~~g---~~~~a~~~~~~m~ 290 (305)
. .| +...|..+...+--.| +.+.+.++|....
T Consensus 183 ~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 183 I--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred c--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4 45 4455555555544333 5667777777666
No 131
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.88 E-value=0.016 Score=51.35 Aligned_cols=26 Identities=19% Similarity=0.505 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHH
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQI 155 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (305)
|++|...|.+.|.++.|.++|++-..
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 77888888888888888888877554
No 132
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.85 E-value=0.0059 Score=54.98 Aligned_cols=200 Identities=12% Similarity=0.080 Sum_probs=141.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHH-H
Q 036263 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV-L 169 (305)
Q Consensus 96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-l 169 (305)
.+..+|..|--+..+.|+++.+-+.|++... ...|+.+-..+...|.-..|..++++-....-.|+..+--.+ -
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 6888999999999999999999999998855 556999999999999999999999875543323543333333 3
Q ss_pred HHh-cCcCChhHHHHHHHHHhh--cCC--CCChhHHHHHHHHHHhcC-----------ChHHHHHHHHhcccC---chhh
Q 036263 170 NVC-ANVRTLGIGLWMHRYVPK--QDF--KDNVRVCNTLMDVYSRFG-----------CIEFARQVFQRMHKR---TLVS 230 (305)
Q Consensus 170 ~~~-~~~~~~~~a~~~~~~~~~--~~~--~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~~~~~---~~~~ 230 (305)
..| .+.+..+++..+-.+... .+. ......|..+.-+|...- ...++.+.+++..+. |...
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 333 345667777776666554 111 223445555555554321 234566777776532 2222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCC
Q 036263 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV 295 (305)
Q Consensus 231 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 295 (305)
.-.+---|+..++.+.|.+..++..+.+-.-+...|..+...+.-.+++.+|+.+.+....++|.
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 22233346778899999999999998866678899999999999999999999999988766665
No 133
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.004 Score=49.94 Aligned_cols=238 Identities=13% Similarity=0.066 Sum_probs=141.6
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH-----HHHHh---------hcCCCC-CChhHHHHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFV-----TLLSG---------CADFPS-NNVMVSTALLDMY 108 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-----~ll~~---------~~~~~~-~~~~~~~~ll~~~ 108 (305)
+......+-.+|-...++..|-+.|+++.. ..|...-|. ++-.+ ....++ +....-..-+.+.
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA 120 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA 120 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 667777788888888999999998888765 344433221 11111 111111 1111111111222
Q ss_pred --HhcCChHHHHHHHHhcCc---cccHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCcCChhHHH
Q 036263 109 --AKFGRMDLATVVFDVMRG---CDFWTALLNGFVKRDYFEEALEYFRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGL 182 (305)
Q Consensus 109 --~~~g~~~~a~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~ 182 (305)
-..+++..+..+.++.+. ..+.+...-...+.|+++.|.+-|+...+- |..| ...|+..+. ..+.|+.+.|.
T Consensus 121 IkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasAL 198 (459)
T KOG4340|consen 121 IKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASAL 198 (459)
T ss_pred HhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHH
Confidence 234677777788888875 333444444456789999999999887664 5554 456766554 45678888999
Q ss_pred HHHHHHhhcCCC-------------CChh--------HHHHHHHH-------HHhcCChHHHHHHHHhccc-----Cchh
Q 036263 183 WMHRYVPKQDFK-------------DNVR--------VCNTLMDV-------YSRFGCIEFARQVFQRMHK-----RTLV 229 (305)
Q Consensus 183 ~~~~~~~~~~~~-------------~~~~--------~~~~li~~-------~~~~g~~~~a~~~~~~~~~-----~~~~ 229 (305)
+...+++++|++ ||+. +-+.++.+ +.+.|+++.|.+-+-.|+. .|.+
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv 278 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV 278 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence 988888887653 1211 11233333 4567889999999988873 2555
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036263 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287 (305)
Q Consensus 230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 287 (305)
|.+.+.-.= ..+++.+..+-+.-+.+.+. ....||..++--||+..-++.|-.++-
T Consensus 279 TLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 279 TLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred hhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 555543221 23445555555555555432 345677777777777777777766654
No 134
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.83 E-value=0.00062 Score=55.78 Aligned_cols=139 Identities=12% Similarity=0.085 Sum_probs=80.3
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV-CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 207 (305)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46666777777777777777777766432 1122233322222 22345566677777777665 455666677777777
Q ss_pred HhcCChHHHHHHHHhcccC------chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036263 208 SRFGCIEFARQVFQRMHKR------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271 (305)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 271 (305)
.+.|+.+.|..+|++.... ....|...+.-=.+.|+.+.+.++.+++.+. -|+...+..++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 7777777777777776531 2346777777767777777777777777663 344344444443
No 135
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.80 E-value=0.02 Score=55.32 Aligned_cols=224 Identities=11% Similarity=0.066 Sum_probs=145.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc------
Q 036263 53 SRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG------ 126 (305)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------ 126 (305)
..+...|++++|...+++..+. .|....+... ...+.+...+...|++++|...+++...
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~------------~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g 525 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAE--LPLTWYYSRI------------VATSVLGEVHHCKGELARALAMMQQTEQMARQHD 525 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhc--CCCccHHHHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 4456789999999999988763 1221111111 1234555667789999999999887753
Q ss_pred -----cccHHHHHHHHHcCCChHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC--
Q 036263 127 -----CDFWTALLNGFVKRDYFEEALEYFRVMQI----SGVE--P-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQD-- 192 (305)
Q Consensus 127 -----~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 192 (305)
...+..+...+...|+++.|...+++... .|.. | ....+..+...+...|++++|...+++.....
T Consensus 526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 22345566778889999999999887654 2221 1 23334455556777899999999988775421
Q ss_pred CCC--ChhHHHHHHHHHHhcCChHHHHHHHHhccc----Cc-hhhH-----HHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036263 193 FKD--NVRVCNTLMDVYSRFGCIEFARQVFQRMHK----RT-LVSW-----NSIIVGFAVNGFVGEALEYFNLMQKGVFK 260 (305)
Q Consensus 193 ~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~-~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 260 (305)
..+ ....+..+...+...|+.++|.+.+++... .. ...+ ...+..+...|+.+.|..++.........
T Consensus 606 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 685 (903)
T PRK04841 606 YQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA 685 (903)
T ss_pred cCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc
Confidence 112 234455566778899999999998888752 11 1111 11224456689999999998775542211
Q ss_pred CCH---HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 261 TDE---VSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 261 p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
... ..+..+..++...|++++|...++...
T Consensus 686 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 686 NNHFLQGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111 123456677888999999999999876
No 136
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.79 E-value=0.00059 Score=45.02 Aligned_cols=90 Identities=14% Similarity=0.166 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 276 (305)
+..+...+...|++++|...+++..+ | +...+..+...+...|++++|.+.++.....+ +.+..++..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 44555666667777777777776653 2 33556666777777777788887777766643 22335666777777777
Q ss_pred CcHHHHHHHHHHHH
Q 036263 277 GLIEDGLQYFDIMK 290 (305)
Q Consensus 277 g~~~~a~~~~~~m~ 290 (305)
|+++.|...++...
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 88888877777665
No 137
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.78 E-value=0.0031 Score=56.65 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=75.7
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 036263 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217 (305)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 217 (305)
.....|.+|+.+++.+..... -+.-|..+.+.|...|+++.|+++|-+. ..++-.|.+|.+.|+++.|.
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 344556666666665554322 2233566666777777777777766432 12444566777777777777
Q ss_pred HHHHhcccC--chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263 218 QVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288 (305)
Q Consensus 218 ~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (305)
++-.+...| ....|-.-..-.-.+|++.+|.++|-.... |+ ..|..|-+.|..++.+.+.+.
T Consensus 812 kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 812 KLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 776666654 333444444445666777776666543322 43 345666677777776666553
No 138
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.02 Score=49.08 Aligned_cols=158 Identities=8% Similarity=-0.069 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH--HHH----HHHH----HhcCcCChhHHHHHHHHHhhcCCCCChhH
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL--TII----SVLN----VCANVRTLGIGLWMHRYVPKQDFKDNVRV 199 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~----~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 199 (305)
|-..++.-...|+.+...++|++.... ++|-.. -|. ..|+ .-....+++.+.++++...+. ++-..+|
T Consensus 325 WfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFt 402 (677)
T KOG1915|consen 325 WFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFT 402 (677)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccch
Confidence 444444445556666666666554432 333110 010 1111 112345556666666655552 2323333
Q ss_pred HHHH----HHHHHhcCChHHHHHHHHhccc--CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263 200 CNTL----MDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273 (305)
Q Consensus 200 ~~~l----i~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 273 (305)
+.-+ ...-.+..++..|.+++..... |-..+|-..|..-.+.+++|.+..++++..+.+ +-|..+|.....-=
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHH
Confidence 3332 2223345666667666666552 555667777777777888888888888888754 22556777666666
Q ss_pred hccCcHHHHHHHHHHHH
Q 036263 274 SHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 274 ~~~g~~~~a~~~~~~m~ 290 (305)
...|+.|.|..+|+-..
T Consensus 482 ~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAI 498 (677)
T ss_pred HHhhhHHHHHHHHHHHh
Confidence 67788888888888665
No 139
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.75 E-value=0.00059 Score=52.17 Aligned_cols=105 Identities=13% Similarity=0.188 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHhc-----CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHH
Q 036263 159 EPDYLTIISVLNVCA-----NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS 233 (305)
Q Consensus 159 ~p~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 233 (305)
.-+..+|..+++.+. +.|.++=....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 557788888888875 457788888889999999999999999999999876 4432 22222222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036263 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278 (305)
Q Consensus 234 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 278 (305)
.--| -.+.+-|++++++|...|+-||..|+..+++.|.+.+.
T Consensus 112 -F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 -FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 23467899999999999999999999999999977653
No 140
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.71 E-value=0.0032 Score=56.05 Aligned_cols=139 Identities=8% Similarity=-0.064 Sum_probs=95.8
Q ss_pred CCCCHHHHHHHHHHhcCc-----CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhcc
Q 036263 158 VEPDYLTIISVLNVCANV-----RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF--------GCIEFARQVFQRMH 224 (305)
Q Consensus 158 ~~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~~~ 224 (305)
...+...|...+.+.... ++...|..+|++..+.. +-....|..+..+|... .++..+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 345678888888875432 33668889999988875 34455555544444322 12334444444422
Q ss_pred -----cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263 225 -----KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 225 -----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
..+...|..+.......|++++|...+++....+ |+...|..+.+.+...|+.++|.+.+++.. .+.|..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~---~L~P~~ 486 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF---NLRPGE 486 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCC
Confidence 1244677777667777899999999999998854 788889999999999999999999998877 666665
Q ss_pred ccc
Q 036263 300 EHH 302 (305)
Q Consensus 300 ~~y 302 (305)
.+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 554
No 141
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.71 E-value=0.0019 Score=48.85 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=56.9
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPD--YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 206 (305)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 456666677777777777777777665432222 3566677777777788888888777777653 3345556666666
Q ss_pred HHhcCChHHHH
Q 036263 207 YSRFGCIEFAR 217 (305)
Q Consensus 207 ~~~~g~~~~a~ 217 (305)
|...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 76666654443
No 142
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.0026 Score=51.03 Aligned_cols=190 Identities=10% Similarity=0.004 Sum_probs=130.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHhcCc
Q 036263 102 TALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS-VLNVCANV 175 (305)
Q Consensus 102 ~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~ 175 (305)
++.+..+.+..++++|.+++..-.+ ......|..+|-...++..|-..++++.. ..|...-|.. -...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHh
Confidence 3444446677788888887765533 33466777888888888888888888765 3565555542 23456677
Q ss_pred CChhHHHHHHHHHhhcCCCCChhHHHHHHHH--HHhcCChHHHHHHHHhcc-cCchhhHHHHHHHHHhcCChHHHHHHHH
Q 036263 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV--YSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFN 252 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~ 252 (305)
+.+..|.++...|... ++...-..-+.+ ....+++..+..++++.. +.+..+.+.......+.|+++.|.+-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 7888888888777543 222222222222 235678888888888888 3566666666666778999999999999
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263 253 LMQKG-VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 253 ~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
...+. |+.| ...|+..+ +..+.|+++.|+++..++. ..|++-.+
T Consensus 169 aAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIi-eRG~r~HP 213 (459)
T KOG4340|consen 169 AALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEII-ERGIRQHP 213 (459)
T ss_pred HHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHH-HhhhhcCC
Confidence 97765 5655 46776654 4456689999999999999 77876443
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.69 E-value=0.001 Score=46.57 Aligned_cols=93 Identities=11% Similarity=-0.058 Sum_probs=43.4
Q ss_pred HHHHHHHhcCcCChhHHHHHHHHHhhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc----hhhHHHHHH
Q 036263 165 IISVLNVCANVRTLGIGLWMHRYVPKQDF--KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT----LVSWNSIIV 236 (305)
Q Consensus 165 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~li~ 236 (305)
+..+...+.+.|++++|...++.+.+..- +.....+..+..++.+.|++++|...|+.+.. |+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444444555555555555555544321 00123344455555555555555555555442 21 223444444
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 036263 237 GFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 237 ~~~~~g~~~~a~~~~~~m~~~ 257 (305)
++...|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555443
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.67 E-value=0.0007 Score=44.66 Aligned_cols=90 Identities=19% Similarity=0.160 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263 131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210 (305)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 210 (305)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+...+..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 334444555555555555555554321 1122344444444555555555555555544433 22233444444444445
Q ss_pred CChHHHHHHHHh
Q 036263 211 GCIEFARQVFQR 222 (305)
Q Consensus 211 g~~~~a~~~~~~ 222 (305)
|+.++|...+.+
T Consensus 82 ~~~~~a~~~~~~ 93 (100)
T cd00189 82 GKYEEALEAYEK 93 (100)
T ss_pred HhHHHHHHHHHH
Confidence 555555444443
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.0011 Score=56.43 Aligned_cols=84 Identities=6% Similarity=-0.104 Sum_probs=45.6
Q ss_pred hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHH
Q 036263 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEAL 248 (305)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~ 248 (305)
+...|++++|...+++.++.. +.+...|..+..+|.+.|++++|...+++..+ | +...|..+..+|...|++++|.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 344455555555555555543 33445555555555555666666555555542 2 3445555555555666666666
Q ss_pred HHHHHHHH
Q 036263 249 EYFNLMQK 256 (305)
Q Consensus 249 ~~~~~m~~ 256 (305)
..|++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 66665555
No 146
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.0062 Score=50.03 Aligned_cols=117 Identities=11% Similarity=0.139 Sum_probs=50.1
Q ss_pred HHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHH----cCCCCC--HHHHH
Q 036263 104 LLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQI----SGVEPD--YLTII 166 (305)
Q Consensus 104 ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~--~~t~~ 166 (305)
....|...|++++|...|.+... ...|......+.+. ++++|.+.+++..+ .| .|+ ...+.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~ 118 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence 33445556666666666655422 12233333333333 55555555544322 12 222 22344
Q ss_pred HHHHHhcCc-CChhHHHHHHHHHhhc----CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263 167 SVLNVCANV-RTLGIGLWMHRYVPKQ----DFKDN--VRVCNTLMDVYSRFGCIEFARQVFQRM 223 (305)
Q Consensus 167 ~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (305)
.+...|... |+++.|.+.|++..+. | .+. ..++..+...+.+.|++++|.++|+++
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444445554 5555555555544321 1 111 223344445555555555555555544
No 147
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0017 Score=53.25 Aligned_cols=192 Identities=13% Similarity=0.077 Sum_probs=125.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---
Q 036263 50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--- 126 (305)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--- 126 (305)
.++-.|.+.+++++|..+..++ .|... |-.++.+ .++.++..-.....++.-|++.|+-.-+
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl-----~PttP-~EyilKg---------vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDL-----DPTTP-YEYILKG---------VVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred hheeeecccccHHHHHHHHhhc-----CCCCh-HHHHHHH---------HHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 3455677889999998887765 33211 2223332 1222222223333455667777766643
Q ss_pred ----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH-H
Q 036263 127 ----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC-N 201 (305)
Q Consensus 127 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 201 (305)
..---++.+.+.-..++++++.+++..+..=..-|..-| .+..+.+..|...+|+++|-......++ |..+| .
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s 432 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKS 432 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHH
Confidence 112455667777777889999888887765333333333 4678888999999999999877655543 44555 5
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCch-h-hHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036263 202 TLMDVYSRFGCIEFARQVFQRMHKRTL-V-SWNSIIVGFAVNGFVGEALEYFNLMQKGV 258 (305)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g 258 (305)
.|.++|.++++++-|+.++-++..|.. . ....+..-|.+.+.+--|.+.|+.+...+
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 567899999999999999988876532 2 23344566788888888888888887754
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.64 E-value=0.0004 Score=45.54 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=8.3
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 036263 234 IIVGFAVNGFVGEALEYFNL 253 (305)
Q Consensus 234 li~~~~~~g~~~~a~~~~~~ 253 (305)
+..+|.+.|++++|..++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444444433
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.64 E-value=0.0027 Score=44.37 Aligned_cols=91 Identities=14% Similarity=-0.015 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccc--Cc----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHK--RT----LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK--TDEVSFTGALT 271 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~ 271 (305)
+..+...+.+.|++++|.+.|+.+.+ |+ ...+..+..++...|+++.|...|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444455555555555555555542 11 123344555555555555555555555442111 11233444445
Q ss_pred HHhccCcHHHHHHHHHHHH
Q 036263 272 ACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~ 290 (305)
++.+.|++++|...++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHhCChHHHHHHHHHHH
Confidence 5555555555555555555
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.63 E-value=0.00014 Score=47.73 Aligned_cols=78 Identities=14% Similarity=0.034 Sum_probs=37.6
Q ss_pred CChhHHHHHHHHHhhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhcc--cCchhhHHHHHHHHHhcCChHHHHHHHH
Q 036263 176 RTLGIGLWMHRYVPKQDFK-DNVRVCNTLMDVYSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFN 252 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~ 252 (305)
|+++.|..+++.+.+.... ++...+..+..+|.+.|++++|..++++.. ..+....-.+..+|...|++++|.++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4555555555555554321 123333445556666666666666665521 1222333344555556666666666554
Q ss_pred H
Q 036263 253 L 253 (305)
Q Consensus 253 ~ 253 (305)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 3
No 151
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.021 Score=45.25 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=93.2
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----
Q 036263 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR---- 209 (305)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 209 (305)
...|+..|++++|++..+... ..+. ...=+..+.+..+++-|.+.++.|.+-. +..+.+-|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~--~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEA--AALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 356778888888888876521 1222 2222334457778888888888887643 44555555555543
Q ss_pred cCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHHHHH
Q 036263 210 FGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL-IEDGLQY 285 (305)
Q Consensus 210 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~ 285 (305)
.+...+|.-+|++|.+ |+..+.+-...++...|++++|..++++...... -++.|..-++-+-...|. .+-..+.
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 4568888888888875 5666666677778888888888888888877642 345555555444444443 3444455
Q ss_pred HHHHH
Q 036263 286 FDIMK 290 (305)
Q Consensus 286 ~~~m~ 290 (305)
+..++
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 55555
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.0022 Score=52.53 Aligned_cols=123 Identities=13% Similarity=0.115 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCc--ccc---HHHHHHH-HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 036263 100 VSTALLDMYAKFGRMDLATVVFDVMRG--CDF---WTALLNG-FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173 (305)
Q Consensus 100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~---~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (305)
+|..++....+.+.++.|..+|.+... ..+ |-..... +...++.+.|..+|+...+. +..+...|..-++-+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 455555555555555555555555543 111 2111111 11133444455555554443 2334444444455555
Q ss_pred CcCChhHHHHHHHHHhhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 174 NVRTLGIGLWMHRYVPKQDFKDNV---RVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
+.++.+.|..+|+..... +.++. ..|...++.=.+.|+++.+.++.+++.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555443 22211 355555555555555555555555554
No 153
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.57 E-value=0.051 Score=48.34 Aligned_cols=235 Identities=15% Similarity=0.074 Sum_probs=136.4
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYG-TNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD 122 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 122 (305)
....|-.+..+....|+...|..+++...+.. -.|+...|.....-. --.....+.|..+.|.+.+.
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L------------y~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL------------YQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH------------HHHHHHHHcccHHHHHHHHH
Confidence 34678888888888999999999999988764 356666654433221 11222344555566555554
Q ss_pred hcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CcCC-h-----------------
Q 036263 123 VMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA-NVRT-L----------------- 178 (305)
Q Consensus 123 ~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~-~----------------- 178 (305)
.-.. ...-.+-...+.+.+++++|..++..+..+ .||..-|...+..+. +..+ .
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 4432 111222334455555666666666655553 344333332222111 0000 0
Q ss_pred -----------------hHHHHHHHHHhhcCC----------------------------------------------CC
Q 036263 179 -----------------GIGLWMHRYVPKQDF----------------------------------------------KD 195 (305)
Q Consensus 179 -----------------~~a~~~~~~~~~~~~----------------------------------------------~~ 195 (305)
+....++..+.+.|+ +|
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P 367 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP 367 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence 111111111112221 33
Q ss_pred Chh--HHHHHHHHHHhcCChHHHHHHHHhcccCchh---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036263 196 NVR--VCNTLMDVYSRFGCIEFARQVFQRMHKRTLV---SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270 (305)
Q Consensus 196 ~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 270 (305)
... ++..+++.|-+.|+++.|...++.....+.. .|-.=.+.+...|++++|..++++.++.+ .||...-..-.
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcA 446 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCA 446 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHH
Confidence 333 3445677788888888888888888764433 33333567888899999999999888764 35555555666
Q ss_pred HHHhccCcHHHHHHHHHHHHHHhC
Q 036263 271 TACSHAGLIEDGLQYFDIMKKIYR 294 (305)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~~~ 294 (305)
+...+..+.++|.++..... +.|
T Consensus 447 KYmLrAn~i~eA~~~~skFT-r~~ 469 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFT-REG 469 (700)
T ss_pred HHHHHccccHHHHHHHHHhh-hcc
Confidence 77778888888888888776 444
No 154
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.55 E-value=0.0062 Score=42.68 Aligned_cols=107 Identities=16% Similarity=0.045 Sum_probs=66.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCC--CChhHHHHHHHHHH
Q 036263 133 LLNGFVKRDYFEEALEYFRVMQISGVEPD--YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK--DNVRVCNTLMDVYS 208 (305)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~ 208 (305)
+..++-..|+.++|..+|++-...|...+ ...+-.+-.++...|++++|..+++......-. .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34556667888888888888777776554 334555666777778888888888777654211 12222223334666
Q ss_pred hcCChHHHHHHHHhcccCchhhHHHHHHHHH
Q 036263 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFA 239 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 239 (305)
..|+.++|.+.+-....++...|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777787777776655555555555555554
No 155
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.029 Score=52.53 Aligned_cols=192 Identities=13% Similarity=0.101 Sum_probs=136.5
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------CChhHHHHHHHHHHhcC
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------NNVMVSTALLDMYAKFG 112 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------~~~~~~~~ll~~~~~~g 112 (305)
-|+..|--+++...+.|.+++.++.+.-.++....|...+ .++-++++.+. |+......+.+-|...|
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhh
Confidence 3677888888888888888888887777777666666553 45666666666 66666677777777777
Q ss_pred ChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263 113 RMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192 (305)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 192 (305)
.++.|.-+|.... -|..|...+...|+++.|.+.-+.. -+..||..+-.+|...+.+..| +|....
T Consensus 1209 ~y~aAkl~y~~vS---N~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~ 1274 (1666)
T KOG0985|consen 1209 MYEAAKLLYSNVS---NFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLN 1274 (1666)
T ss_pred hhHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCce
Confidence 7777777766543 4888888888889988887766543 3567899998999888877544 333444
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhcc---cCchhhHHHHHHHHHhcCChHHHHHHH
Q 036263 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYF 251 (305)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~ 251 (305)
+...+.-..-++..|-..|-+++...+++... ......|+.|.-.|.+- ++++..+-+
T Consensus 1275 iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1275 IIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 45556667788999999999999998888765 23556677666666554 344444433
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.53 E-value=0.0038 Score=46.96 Aligned_cols=79 Identities=8% Similarity=-0.044 Sum_probs=42.8
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEP--DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 206 (305)
.|..+...+...|++++|...|++.......| ...++..+-..+...|+.++|...++...+.. +.....+..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 35555566666667777776666655432122 12355556666666666666666666665542 2223344444444
Q ss_pred HH
Q 036263 207 YS 208 (305)
Q Consensus 207 ~~ 208 (305)
+.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
No 157
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.49 E-value=0.035 Score=50.22 Aligned_cols=124 Identities=10% Similarity=-0.096 Sum_probs=101.8
Q ss_pred HHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--cC-chhhHHHHHHHHHhc
Q 036263 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH--KR-TLVSWNSIIVGFAVN 241 (305)
Q Consensus 165 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~ 241 (305)
|......+.+.+..++|...+.+..+.. +.....|......+...|.+.+|.+.|.... +| ++.+-+++...+...
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 3345556677788888888888776664 5667778888888888999999999998876 44 668889999999999
Q ss_pred CChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 242 GFVGEALE--YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 242 g~~~~a~~--~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
|+..-|.. ++.++.+.+ +.+...|-.+-..+-+.|+.+.|-+.|+...
T Consensus 732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 99888888 999999965 2467889999999999999999999999877
No 158
>PLN02789 farnesyltranstransferase
Probab=97.48 E-value=0.046 Score=45.67 Aligned_cols=180 Identities=13% Similarity=0.026 Sum_probs=119.8
Q ss_pred HHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC--hh
Q 036263 108 YAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRD-YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT--LG 179 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~ 179 (305)
+...++.++|+.+.+++.. ..+|+.--..+...| ++++++..++++.+... -+..+|+..-..+.+.|. .+
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhH
Confidence 4445677888888877744 334555555666667 57999999999887532 234455544333444454 36
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhc---CCh----HHHHH
Q 036263 180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVN---GFV----GEALE 249 (305)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~---g~~----~~a~~ 249 (305)
++..+++.+.+.+ +-+..+|+.-.-++.+.|+++++.+.++++.+ .|...|+.....+.+. |+. ++..+
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 7788888888876 66788999998999999999999999999985 3667777766555544 223 46777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhcc----CcHHHHHHHHHHHH
Q 036263 250 YFNLMQKGVFKTDEVSFTGALTACSHA----GLIEDGLQYFDIMK 290 (305)
Q Consensus 250 ~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~ 290 (305)
+..++.... +-|...|+-+...+... +...+|.+.+.+..
T Consensus 205 y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 205 YTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 776776642 22445666655555552 34455766666654
No 159
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.01 Score=54.10 Aligned_cols=219 Identities=11% Similarity=0.111 Sum_probs=118.4
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLY-GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD 122 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 122 (305)
+...|..+.+.|.+.++++-|.-.+-.|... |.. . ++-..+. ++ ..-....-.....|-+++|+.+|.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaR-------A-lR~a~q~--~~-e~eakvAvLAieLgMlEeA~~lYr 824 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGAR-------A-LRRAQQN--GE-EDEAKVAVLAIELGMLEEALILYR 824 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHH-------H-HHHHHhC--Cc-chhhHHHHHHHHHhhHHHHHHHHH
Confidence 4455666666666666666666655555432 110 0 0000011 11 111222223455678888888887
Q ss_pred hcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHh----------hcC
Q 036263 123 VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP----------KQD 192 (305)
Q Consensus 123 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----------~~~ 192 (305)
+-.. |..|=..|-..|.|++|+++-+.=-+ + .-..||..-...+-..++.+.|.+.|++.- +..
T Consensus 825 ~ckR---~DLlNKlyQs~g~w~eA~eiAE~~DR--i-HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~ 898 (1416)
T KOG3617|consen 825 QCKR---YDLLNKLYQSQGMWSEAFEIAETKDR--I-HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY 898 (1416)
T ss_pred HHHH---HHHHHHHHHhcccHHHHHHHHhhccc--e-ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence 7665 44444556667888888877654211 1 123355544555555666666666655421 110
Q ss_pred ---------CCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036263 193 ---------FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263 (305)
Q Consensus 193 ---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 263 (305)
-..|...|......+-..|+.+.|..+|...+ -|-++++..|-.|+.++|-.+-++- -|.
T Consensus 899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es------gd~ 967 (1416)
T KOG3617|consen 899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEES------GDK 967 (1416)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHhc------ccH
Confidence 12345666666677777888888888887765 3445555555566666665554431 133
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 264 VSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 264 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
...-.|.+.|...|++.+|..+|-..+
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 333345556666666666666555444
No 160
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.04 Score=43.66 Aligned_cols=141 Identities=9% Similarity=0.001 Sum_probs=104.0
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHH----
Q 036263 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT---- 202 (305)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---- 202 (305)
..+.+.++..+.-.|.+.-.+.++++..+..-+-+......+.+.-...|+.+.|...|+...+..-..+....+.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 3446788888888899999999999998876556777788888888999999999999998876543444444433
Q ss_pred -HHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036263 203 -LMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269 (305)
Q Consensus 203 -li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 269 (305)
.-..|.-.+++.+|.+.+.++... |...-|.=.-+..-.|+...|.+..+.|... .|...+-+++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 334455677899999999888743 4455555444555578999999999999985 4555554433
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.40 E-value=0.012 Score=44.48 Aligned_cols=82 Identities=12% Similarity=-0.001 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHH
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN--VRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIV 236 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~ 236 (305)
...+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+ .+...+..+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 45677777888899999999999999887543222 46788889999999999999999988874 24566666777
Q ss_pred HHHhcCC
Q 036263 237 GFAVNGF 243 (305)
Q Consensus 237 ~~~~~g~ 243 (305)
.+...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 7777666
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.38 E-value=0.0084 Score=43.80 Aligned_cols=93 Identities=9% Similarity=-0.069 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHh
Q 036263 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAV 240 (305)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 240 (305)
..-.+-.-+...|++++|..+|+.+...+ +.+..-|..|.-++-..|++++|...|..... .|...+-.+..++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33444445567788888888888777765 45566667777777777888888888777652 356677777777888
Q ss_pred cCChHHHHHHHHHHHHC
Q 036263 241 NGFVGEALEYFNLMQKG 257 (305)
Q Consensus 241 ~g~~~~a~~~~~~m~~~ 257 (305)
.|+.+.|.+-|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888777766553
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.37 E-value=0.0053 Score=52.19 Aligned_cols=88 Identities=7% Similarity=-0.017 Sum_probs=67.7
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263 135 NGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213 (305)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (305)
..+...|++++|++.|++..+. .| +...|..+..++...|++++|...++.+.+.. +.+...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 4556678888888888887764 34 46667777778888888888888888887765 45677788888888888888
Q ss_pred HHHHHHHHhccc
Q 036263 214 EFARQVFQRMHK 225 (305)
Q Consensus 214 ~~a~~~~~~~~~ 225 (305)
++|...|++..+
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 888888888763
No 164
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.36 E-value=0.0056 Score=44.81 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----HhCCCCCccc
Q 036263 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK----IYRVSPQIEH 301 (305)
Q Consensus 229 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 301 (305)
.+...++..+...|++++|..+.+.+.... +.|...|..++.++...|+...|.++|+.+.+ +.|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 355566777778888888888888887753 34677888888888888888888888877643 4688887654
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.34 E-value=0.0037 Score=47.00 Aligned_cols=92 Identities=10% Similarity=-0.065 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHH
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD--NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIV 236 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~ 236 (305)
...+..+...+...|++++|...++........+ ...++..+...|...|++++|...+++... | ...++..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4455666666777788888888888776543222 234677777778888888888888877653 2 2344444444
Q ss_pred HHH-------hcCChHHHHHHHHH
Q 036263 237 GFA-------VNGFVGEALEYFNL 253 (305)
Q Consensus 237 ~~~-------~~g~~~~a~~~~~~ 253 (305)
.+. ..|+++.|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 444 66666655555444
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.31 E-value=0.0013 Score=40.93 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=23.2
Q ss_pred cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
.|++++|.++++.+.+.. +-+...+..+..+|.+.|++++|.++++++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555544443 3344444445555555555555555555544
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.29 E-value=0.015 Score=47.88 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=14.7
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHH
Q 036263 45 TVQWTSSISRHCRSGCILEAALEFTRM 71 (305)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~m 71 (305)
...|......+.+.++...|-..|.++
T Consensus 55 ~~ay~kAa~~~~~~~~~~~Aa~~~~~A 81 (282)
T PF14938_consen 55 AEAYEKAADCYEKLGDKFEAAKAYEEA 81 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555566666666655555555444
No 168
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.27 E-value=0.15 Score=47.13 Aligned_cols=213 Identities=11% Similarity=0.102 Sum_probs=108.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccH
Q 036263 56 CRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFW 130 (305)
Q Consensus 56 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~ 130 (305)
...+++..|+.-..++.+. .|+. .|..++.++ ...|.|+.++|..+++.... ..+.
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaL----------------sl~r~gk~~ea~~~Le~~~~~~~~D~~tL 80 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKAL----------------SLFRLGKGDEALKLLEALYGLKGTDDLTL 80 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHH----------------HHHHhcCchhHHHHHhhhccCCCCchHHH
Confidence 3456677777777666653 3332 233333332 24566777777777766633 4456
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263 131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210 (305)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 210 (305)
..+-.+|.+.|+.++|..+|++... ..|+..-...+..+|.+.+.+.+-.++--++-+ .++-+...+-++++.+...
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHh
Confidence 6667777777777777777777654 356666666777777777666543333333322 1233444444444444432
Q ss_pred CC----------hHHHHHHHHhcccCc-----hhhHHHHHHHHHhcCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHh
Q 036263 211 GC----------IEFARQVFQRMHKRT-----LVSWNSIIVGFAVNGFVGEALEYFNL-MQKGVFKTDEVSFTGALTACS 274 (305)
Q Consensus 211 g~----------~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~ 274 (305)
.. ..-|.+.++.+.+.. ..-...-...+-..|++++|.+++.. ..+.-..-+...-+.-+.-+.
T Consensus 158 ~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk 237 (932)
T KOG2053|consen 158 IFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLK 237 (932)
T ss_pred ccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 11 122444444444322 11122223334456667777777633 222222223333333334444
Q ss_pred ccCcHHHHHHHHHHHH
Q 036263 275 HAGLIEDGLQYFDIMK 290 (305)
Q Consensus 275 ~~g~~~~a~~~~~~m~ 290 (305)
..++|.+..++-.++.
T Consensus 238 ~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 238 LLNRWQELFELSSRLL 253 (932)
T ss_pred HhcChHHHHHHHHHHH
Confidence 4555555554444444
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.26 E-value=0.0041 Score=49.87 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=37.5
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 036263 137 FVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215 (305)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 215 (305)
+.+.+++++|+..|.+..+ +.|+ ..-|..-..+|.+.|..+.|.+-.+..+..+ +-....|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3344445555555544443 2332 2223333444444554444444444444332 2224444444445555555555
Q ss_pred HHHHHHhcc
Q 036263 216 ARQVFQRMH 224 (305)
Q Consensus 216 a~~~~~~~~ 224 (305)
|.+.|++..
T Consensus 168 A~~aykKaL 176 (304)
T KOG0553|consen 168 AIEAYKKAL 176 (304)
T ss_pred HHHHHHhhh
Confidence 554444444
No 170
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.24 E-value=0.016 Score=52.92 Aligned_cols=184 Identities=18% Similarity=0.224 Sum_probs=119.2
Q ss_pred ChhHHHHHHH--HHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHc-C--------CCCCHHHH
Q 036263 97 NVMVSTALLD--MYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQIS-G--------VEPDYLTI 165 (305)
Q Consensus 97 ~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~p~~~t~ 165 (305)
|..+-.++++ .|...|+.|.|.+-.+.+.+..+|..|.+.|.+..+++-|.-.+-.|... | -.|+ .+=
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~e 803 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDE 803 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chh
Confidence 3344444443 35567999999999999999999999999999999999888887777532 2 1232 111
Q ss_pred HHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCc-hhhHHHHHHHHHhcCCh
Q 036263 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT-LVSWNSIIVGFAVNGFV 244 (305)
Q Consensus 166 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 244 (305)
..+.-.....|..++|..+|++-.+. ..|=+.|...|.+++|.++-+.-..-. -.||.....-+-..+|.
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccH
Confidence 12222234678888888888776553 344556667788888887765433222 24566666666667777
Q ss_pred HHHHHHHHH----------HHHCC---------CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 245 GEALEYFNL----------MQKGV---------FKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 245 ~~a~~~~~~----------m~~~g---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+.|++.|++ |.... -..|...|...-+.....|+.|.|+.+|...+
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 777776654 22221 12244556666666667788888888888776
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.22 E-value=0.0016 Score=40.13 Aligned_cols=55 Identities=15% Similarity=0.124 Sum_probs=33.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 235 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
...+...|++++|.+.|++..+.. +-+...+..+..++...|++++|..+|+.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666777777777666653 2244556666666666677777776666665
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.19 E-value=0.019 Score=41.95 Aligned_cols=100 Identities=9% Similarity=-0.003 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273 (305)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 273 (305)
....-.+..-+...|++++|.++|+-+.. | +..-|-.|.-++-..|++++|+..|........ -|+..+-.+-.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 34445556667789999999999998874 4 556777888888999999999999999988652 4667888888999
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCC
Q 036263 274 SHAGLIEDGLQYFDIMKKIYRVSP 297 (305)
Q Consensus 274 ~~~g~~~~a~~~~~~m~~~~~~~p 297 (305)
...|+.+.|++.|+......+-.|
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhccCh
Confidence 999999999999998874444333
No 173
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.16 E-value=0.038 Score=42.94 Aligned_cols=159 Identities=14% Similarity=0.074 Sum_probs=86.4
Q ss_pred HHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcCc--
Q 036263 108 YAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY--LTIISVLNVCANV-- 175 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~-- 175 (305)
+...|++++|...|+.+.. ....-.++.++.+.|+++.|...++++.+. -|+. .-+...+.+.+.-
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHHh
Confidence 4566788888888877754 233556677777788888888888776654 2321 1122222221111
Q ss_pred -----------CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCCh
Q 036263 176 -----------RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 244 (305)
Q Consensus 176 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 244 (305)
+...+|.. .+..++.-|=.+....+|...+..+.+.=..---.+.+-|.+.|.+
T Consensus 93 ~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred CccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 11112222 2333444444444555555555555432111222356678999999
Q ss_pred HHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCcHHHHH
Q 036263 245 GEALEYFNLMQKGV--FKTDEVSFTGALTACSHAGLIEDGL 283 (305)
Q Consensus 245 ~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~ 283 (305)
..|..-++.+.+.= .+-.......++.++.+.|..+.+.
T Consensus 158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999988862 1112245677788888888887544
No 174
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.15 E-value=0.1 Score=44.20 Aligned_cols=157 Identities=12% Similarity=0.009 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCcccc---------HHHHHHHHHc---CCChHHHHHHHHHHHHcCCCCCHHHHH
Q 036263 99 MVSTALLDMYAKFGRMDLATVVFDVMRGCDF---------WTALLNGFVK---RDYFEEALEYFRVMQISGVEPDYLTII 166 (305)
Q Consensus 99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~ 166 (305)
.+...++-+|....+++...++.+.++...+ -....-++.+ .|+.++|++++.......-.++..||.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3344556678999999999999999976321 2233445666 899999999999966665677888888
Q ss_pred HHHHHhc---------CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC-hH---HHHHHH---Hhcc------
Q 036263 167 SVLNVCA---------NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC-IE---FARQVF---QRMH------ 224 (305)
Q Consensus 167 ~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~---~a~~~~---~~~~------ 224 (305)
.+...|- .....+.|...|.+.-+.. ++...--.+...+...|. .+ +..++- ..+.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7766652 2334677777777665443 433322222222222332 11 222222 1111
Q ss_pred --cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 225 --KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 225 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
..+-..+..++.++.-.|++++|.+..++|.+.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 135567788899999999999999999999985
No 175
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.12 E-value=0.18 Score=45.03 Aligned_cols=131 Identities=10% Similarity=0.060 Sum_probs=94.6
Q ss_pred CCCH--HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHH
Q 036263 159 EPDY--LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN-VRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWN 232 (305)
Q Consensus 159 ~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~ 232 (305)
+|+. +|+-.+...+-..|+++.|...++..... .|+ ...|..-.+.+...|++++|..++++..+ +|...=.
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INs 443 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINS 443 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHH
Confidence 4443 44556777889999999999999998876 455 55677778999999999999999999885 4444333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHH-HHHH--HHHHhccCcHHHHHHHHHHHHH
Q 036263 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKT-----DEVS-FTGA--LTACSHAGLIEDGLQYFDIMKK 291 (305)
Q Consensus 233 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~-~~~l--i~~~~~~g~~~~a~~~~~~m~~ 291 (305)
--..-..+..+.++|.++.....+.|... +..+ |-.+ ..+|.+.|++-+|++=|..+.+
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 55666778899999999998887776411 1111 2111 2467788888888877776663
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.07 E-value=0.0025 Score=39.67 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=37.9
Q ss_pred HhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036263 208 SRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269 (305)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 269 (305)
.+.|++++|.+.|+++.+ | +...+..+..+|.+.|++++|..+++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 356777777777777653 3 5556666777777777777777777777664 3554444433
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.07 E-value=0.054 Score=48.42 Aligned_cols=137 Identities=11% Similarity=0.006 Sum_probs=93.4
Q ss_pred cccHHHHHHHHHcC-----CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCc--------CChhHHHHHHHHHhhc-
Q 036263 127 CDFWTALLNGFVKR-----DYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANV--------RTLGIGLWMHRYVPKQ- 191 (305)
Q Consensus 127 ~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~--------~~~~~a~~~~~~~~~~- 191 (305)
...|...+++.... +..+.|.++|++..+. .|+ ...+..+..++... .+...+.+..+.....
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 45688888775443 2377899999998874 676 33444333322111 1223333444433332
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036263 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267 (305)
Q Consensus 192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 267 (305)
..+.+...|.++.-.+...|++++|...+++.. .|+...|..+...+...|+.++|.+.+++... +.|...||.
T Consensus 415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~ 490 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLY 490 (517)
T ss_pred cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHH
Confidence 234456778887777777899999999999987 47888899999999999999999999999887 456655653
No 178
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.05 E-value=0.0098 Score=43.50 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=27.7
Q ss_pred HHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 165 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
...++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+..+|.++|+++.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3334444444555555555555555443 4444455555555555555555555555443
No 179
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.04 E-value=0.22 Score=44.61 Aligned_cols=223 Identities=13% Similarity=0.116 Sum_probs=122.1
Q ss_pred chHhHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCIL--EAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF 121 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 121 (305)
+...++..-++|.+-++.. +.+.-+++|+++|-.|+.......+..- .-+......+.+.|.-..|.++|
T Consensus 597 eAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~--------gKF~EAAklFk~~G~enRAlEmy 668 (1081)
T KOG1538|consen 597 EALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQ--------GKFHEAAKLFKRSGHENRALEMY 668 (1081)
T ss_pred hhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhh--------hhHHHHHHHHHHcCchhhHHHHH
Confidence 4455666677777765543 3444467788888889876554433221 11333444455555555555555
Q ss_pred HhcCccccHHHHHHHHHcCCChHHHHHHHHHHHH--cCC-CCCHHHHHHHHHHhcCcCChhHHHHHHH------HHhhcC
Q 036263 122 DVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQI--SGV-EPDYLTIISVLNVCANVRTLGIGLWMHR------YVPKQD 192 (305)
Q Consensus 122 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~------~~~~~~ 192 (305)
..|+ ...+..-+...|..++-..+.+.--+ +.+ +|.. . ...+...|+.++|..+.- .+.+-+
T Consensus 669 TDlR----MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka-A----AEmLiSaGe~~KAi~i~~d~gW~d~lidI~ 739 (1081)
T KOG1538|consen 669 TDLR----MFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA-A----AEMLISAGEHVKAIEICGDHGWVDMLIDIA 739 (1081)
T ss_pred HHHH----HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH-H----HHHhhcccchhhhhhhhhcccHHHHHHHHH
Confidence 5554 23344455555555554444432111 111 2221 1 222334455544443321 111111
Q ss_pred C---CCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------
Q 036263 193 F---KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE------ 263 (305)
Q Consensus 193 ~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------ 263 (305)
- ..+..+...+...+.+...+.-|-++|+.|-+. ..++......++|++|+.+-++.-+ +.||.
T Consensus 740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-----ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaq 812 (1081)
T KOG1538|consen 740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-----KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQ 812 (1081)
T ss_pred hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----HHHhhheeecccchHhHhhhhhCcc--ccccccchHHH
Confidence 1 223344444445555666677788888877632 3456667788888888888877654 33433
Q ss_pred -----HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 264 -----VSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 264 -----~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.-|...-++|.+.|+-.+|..+++++.
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 224455577888899999999888886
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.02 E-value=0.088 Score=39.57 Aligned_cols=98 Identities=12% Similarity=0.043 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-----CchhhHHH
Q 036263 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----RTLVSWNS 233 (305)
Q Consensus 159 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 233 (305)
.|+...-..|..++.+.|+..+|...|++...--+.-|....-.+.++....+++.+|...++++.+ ++..+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4444444455555555566666665555555444444555555555555555555555555555542 12223334
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 036263 234 IIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 234 li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
+.+.+...|++..|..-|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44555555666656555555555
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.01 E-value=0.0037 Score=38.50 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=34.0
Q ss_pred HHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 204 MDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
...+.+.|++++|.+.|+++.+ | +...+..+..++...|++++|..+|++..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456666777777777777664 2 445666666667777777777777776665
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.98 E-value=0.043 Score=38.49 Aligned_cols=101 Identities=11% Similarity=0.010 Sum_probs=67.1
Q ss_pred HHHhcCcCChhHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc----hhhHHHHHHHHHh
Q 036263 169 LNVCANVRTLGIGLWMHRYVPKQDFKDN--VRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT----LVSWNSIIVGFAV 240 (305)
Q Consensus 169 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~ 240 (305)
-.++-..|+.++|..+|++....|.... ...+-.+...|...|++++|..++++... |+ ......+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3455677888999999998888876554 34566677788888999999988888763 33 1222223346677
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263 241 NGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273 (305)
Q Consensus 241 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 273 (305)
.|+.++|+.++-.... ++...|..-|..|
T Consensus 88 ~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred CCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 8888888888766544 2333444444444
No 183
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.98 E-value=0.075 Score=49.05 Aligned_cols=174 Identities=15% Similarity=0.138 Sum_probs=117.3
Q ss_pred hcCChHHHHHHHHhcCc---cccHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHH
Q 036263 110 KFGRMDLATVVFDVMRG---CDFWTALLNG--FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM 184 (305)
Q Consensus 110 ~~g~~~~a~~~~~~~~~---~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 184 (305)
..+++..|......+.. ...|..++.+ +.+.|+.++|..+++.....+.. |..|...+-..|.+.++.++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 34667777766666543 3346666655 46789999999999887665444 889999999999999999999999
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcCChHH----HHHHHHhcccCchhhHHHHHHHHHhc-CC---------hHHHHHH
Q 036263 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF----ARQVFQRMHKRTLVSWNSIIVGFAVN-GF---------VGEALEY 250 (305)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~li~~~~~~-g~---------~~~a~~~ 250 (305)
|++..+. .|+......+..+|.+.+.+.+ |.++++...+.--.-| ++++..... .. ..-|...
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfW-sV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFW-SVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHH-HHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9999886 4668778888888888887654 6667776555433333 444443322 11 2334455
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036263 251 FNLMQKGV-FKTDEVSFTGALTACSHAGLIEDGLQYFD 287 (305)
Q Consensus 251 ~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 287 (305)
++.+.+.+ ---+..-...-.......|.+++|++++.
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~ 214 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLA 214 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555543 22223333344455667889999999984
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.95 E-value=0.18 Score=42.08 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036263 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277 (305)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 277 (305)
.+.+..|.-+...|....|.++-.+.+-|+..-|...+.+++..++|++-.++... +-++.-|..++.+|.+.|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 34555677778889999999999999999999999999999999999988876543 224478899999999999
Q ss_pred cHHHHHHHHHHH
Q 036263 278 LIEDGLQYFDIM 289 (305)
Q Consensus 278 ~~~~a~~~~~~m 289 (305)
..++|..+...+
T Consensus 252 ~~~eA~~yI~k~ 263 (319)
T PF04840_consen 252 NKKEASKYIPKI 263 (319)
T ss_pred CHHHHHHHHHhC
Confidence 999999988764
No 185
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.93 E-value=0.0079 Score=48.32 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=85.5
Q ss_pred HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHH
Q 036263 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEA 247 (305)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a 247 (305)
-+.+.+++.+|...|.+.++.. +.|++-|..=..+|++.|.++.|++--+....- -..+|..|-.+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4678899999999999999985 667888888899999999999999888877753 347899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263 248 LEYFNLMQKGVFKTDEVSFTGALTAC 273 (305)
Q Consensus 248 ~~~~~~m~~~g~~p~~~~~~~li~~~ 273 (305)
.+.|++..+ +.|+..+|..=+...
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 999999888 789988887666543
No 186
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.18 Score=43.92 Aligned_cols=205 Identities=13% Similarity=0.113 Sum_probs=121.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-
Q 036263 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG- 126 (305)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 126 (305)
+..+..+.-+..+++.|++-++...+.. ...+|...+. .+|...|........-+...+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~a-----------------A~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIA-----------------AVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHH-----------------HHHHhccHHHHhhcchHHHHHH
Confidence 5567777777888888888888887643 4444433332 234444433333322222211
Q ss_pred -----------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH-------------------------HHHHHH
Q 036263 127 -----------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT-------------------------IISVLN 170 (305)
Q Consensus 127 -----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-------------------------~~~ll~ 170 (305)
...+..+..++.+.++++.+...|.+.......|+..+ ...--+
T Consensus 287 gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 287 GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGN 366 (539)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHH
Confidence 11122233345555666666666665443333333211 112244
Q ss_pred HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHH
Q 036263 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEA 247 (305)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a 247 (305)
.+.+.|++..|...|.+++++. +-|...|..-.-+|.+.|.+..|.+--+...+. ....|..=..++....+|++|
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999988887 777888888888999999888888766655542 233344334445555678888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263 248 LEYFNLMQKGVFKTDEVSFTGALTACSH 275 (305)
Q Consensus 248 ~~~~~~m~~~g~~p~~~~~~~li~~~~~ 275 (305)
.+.|++..+. .|+..-+..-+.-|..
T Consensus 446 leay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 446 LEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 8888888774 3665554444444443
No 187
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.86 E-value=0.25 Score=42.37 Aligned_cols=66 Identities=9% Similarity=0.082 Sum_probs=50.3
Q ss_pred hHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccc
Q 036263 230 SWNSIIVG--FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG 303 (305)
Q Consensus 230 ~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 303 (305)
.-|-+-+| +..+|++.++.-.-..+.+ +.|+..+|..+--+.....++++|+.++..+ +|+.++++
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L------P~n~~~~d 529 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL------PPNERMRD 529 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC------CCchhhHH
Confidence 33444444 4568889888877777766 7899999999999999999999999999855 35555543
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.84 E-value=0.0071 Score=37.70 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHHH
Q 036263 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG-LIEDGLQYFDIMK 290 (305)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 290 (305)
...|..+...+...|++++|...|++..+.. +-+...|..+..++.+.| ++++|++.++...
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 4556666677777777777777777766642 224456666666777777 6777777776655
No 189
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.84 E-value=0.0076 Score=42.68 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcc-------------------cCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMH-------------------KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
|..++..+|.++++.|+++....+.+..= -|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45678899999999999999988887652 14667788888888888888888888887544
Q ss_pred -CCCCCCHHHHHHHHHHHh
Q 036263 257 -GVFKTDEVSFTGALTACS 274 (305)
Q Consensus 257 -~g~~p~~~~~~~li~~~~ 274 (305)
.+++.+..+|..|++=+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 467777888888877433
No 190
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.82 E-value=0.067 Score=50.07 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=24.3
Q ss_pred cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
.+.++...+..-|+...+.. +-|...|..+..+|.++|++..|.++|.+..
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 34444444444444444433 3344445555555555555555555554443
No 191
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.81 E-value=0.0067 Score=38.93 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 230 SWNSIIVGFAVNGFVGEALEYFNLMQKG----V-FKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+|+.+...|...|++++|...|++..+. | -.|+ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555555443321 1 0111 3445555555555666666666555543
No 192
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.76 E-value=0.034 Score=39.41 Aligned_cols=82 Identities=11% Similarity=0.020 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHhcCcCChhHHHHHHHHHh---------------hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263 161 DYLTIISVLNVCANVRTLGIGLWMHRYVP---------------KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225 (305)
Q Consensus 161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (305)
|..++.++|.++++.|+.+....+++..= .....|+..+..+++.+|+..|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 46788888999999999988888886641 122457888888999999999999999988888764
Q ss_pred -----CchhhHHHHHHHHHhcC
Q 036263 226 -----RTLVSWNSIIVGFAVNG 242 (305)
Q Consensus 226 -----~~~~~~~~li~~~~~~g 242 (305)
-+...|..|+.-....-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 24567777776654443
No 193
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.37 Score=42.68 Aligned_cols=232 Identities=13% Similarity=0.060 Sum_probs=139.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----CCh----------------------------
Q 036263 51 SISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----NNV---------------------------- 98 (305)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----~~~---------------------------- 98 (305)
+.-++-..|+.++|..+|....+.. .+|........+-+..... ++.
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3445667899999999999988763 4555444444333322221 110
Q ss_pred hHH-HHHHHHHHhcCChHHHHHHHHhcCc---cccHHHHHHHHHcC--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036263 99 MVS-TALLDMYAKFGRMDLATVVFDVMRG---CDFWTALLNGFVKR--DYFEEALEYFRVMQISGVEPDYLTIISVLNVC 172 (305)
Q Consensus 99 ~~~-~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (305)
... +.++..| .+..+.+.++-...+. ...+.+++..+.+. ..+..+..++...-+..-.-...+.-.++...
T Consensus 309 i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 309 IYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 000 1111111 1233333333333333 22344555443332 24666777776665542222345566677778
Q ss_pred cCcCChhHHHHHHH--------HHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc------Cc----hhhHHHH
Q 036263 173 ANVRTLGIGLWMHR--------YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK------RT----LVSWNSI 234 (305)
Q Consensus 173 ~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~----~~~~~~l 234 (305)
...|+++.|.+++. .+.+.+..| .+...++..|.+.++-+.|..++.+..+ .. ..++..+
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 89999999999998 555554444 4456667777777777777777776652 11 1234444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289 (305)
Q Consensus 235 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 289 (305)
..--.+.|+.++|..+++++.+.+ ++|..+...++.+|++. +.+.|..+-..+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 444567899999999999999863 57889999999999885 667776665544
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.72 E-value=0.0055 Score=38.23 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 036263 198 RVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNG-FVGEALEYFNLMQK 256 (305)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 256 (305)
..|..+...+...|++++|...|++..+ .+...|..+..+|...| ++++|.+.+++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444445555555555555555555442 13344445555555555 45555555554433
No 195
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.71 E-value=0.32 Score=42.67 Aligned_cols=142 Identities=10% Similarity=0.094 Sum_probs=112.8
Q ss_pred hHHHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHH
Q 036263 114 MDLATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHR 186 (305)
Q Consensus 114 ~~~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~ 186 (305)
.+.....++++.. ..+|-.++....+..-++.|..+|.+..+.+..+ +...+.++|..+| .++...|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 4444555555533 5679999999999999999999999999988777 7777888887665 577889999999
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC------chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 187 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
.-.+.- ..+..--...++-+...++-..|..+|++.... ....|..+|.-=..-|+...+.++-+++...
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 766652 344455567788889999999999999998743 4578999999999999999999998887653
No 196
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.71 E-value=0.33 Score=41.70 Aligned_cols=126 Identities=11% Similarity=0.088 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCcCChhHHHHHHHHHhhcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--CchhhH-HHHHHHH
Q 036263 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSW-NSIIVGF 238 (305)
Q Consensus 163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~-~~li~~~ 238 (305)
.+|-..+++..+..-++.|..+|-++.+.| +.+++.+++++|..++. |+..-|.++|+--.. +|...| +-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 346667777778888888999999998888 56778888888887765 667788888876542 555444 4456666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 239 AVNGFVGEALEYFNLMQKGVFKTD--EVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 239 ~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
...++-+.|..+|+.-... +.-+ ..+|..+|..-+.-|+...+..+-+.|.
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 7788888888888854432 2222 4678888888888888877777666665
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.15 Score=40.53 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=98.8
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC----chhhHHHH-----
Q 036263 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR----TLVSWNSI----- 234 (305)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l----- 234 (305)
+.++++..+.-.+.+.....++.++++..-+-++.....|++.-.+.|+.+.|...|++..+. |..+++.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 456677777788888888999999999876778888999999999999999999999987742 33344433
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCcccc
Q 036263 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302 (305)
Q Consensus 235 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 302 (305)
-..|.-++++..|...+.+....+ .-|....|.=.-+..-.|+..+|.+.++.|. ...|...+-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~---~~~P~~~l~ 322 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMV---QQDPRHYLH 322 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHh---ccCCccchh
Confidence 334667788999999998877653 1234444433344445689999999999888 555655443
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.64 E-value=0.049 Score=44.07 Aligned_cols=93 Identities=12% Similarity=-0.046 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhccc--Cch----hhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 036263 198 RVCNTLMDVYSRFGCIEFARQVFQRMHK--RTL----VSWNSIIVGFAVNGFVGEALEYFNLMQKGV--FKTDEVSFTGA 269 (305)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l 269 (305)
..|...+..+.+.|++++|...|+.+.+ |+. ..+--+...|...|++++|...|+.+.+.- -+.....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555444556777777777776663 322 345556666777777777777777766531 01112334444
Q ss_pred HHHHhccCcHHHHHHHHHHHH
Q 036263 270 LTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 270 i~~~~~~g~~~~a~~~~~~m~ 290 (305)
...+...|+.+.|..+|+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555666777777777777666
No 199
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.61 E-value=0.041 Score=48.04 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=19.9
Q ss_pred hcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHH
Q 036263 110 KFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRV 152 (305)
Q Consensus 110 ~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (305)
+.|+++.|.++.+...+...|..|.....+.|+++.|.+.|.+
T Consensus 330 ~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 330 QLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3444444444444444444444444444444444444444443
No 200
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.59 E-value=0.1 Score=41.94 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=86.6
Q ss_pred CccccccCCCC--CCchHhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHH
Q 036263 31 ISIQTNNSKST--IDTTVQWTSSISRHCRS-----GCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA 103 (305)
Q Consensus 31 ~~~~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 103 (305)
..++..|...+ +.|-.+|-+.+..+... +.++=....+..|++.|+.-|..+|+.||..+-+.
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg---------- 120 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG---------- 120 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc----------
Confidence 33445555554 67888999988888653 66777778899999999999999998888765332
Q ss_pred HHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChh-HHH
Q 036263 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLG-IGL 182 (305)
Q Consensus 104 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 182 (305)
.+- -..+|+. +.-.| -.+-+-+.+++++|...|+.||..+--.+++++++.+..- +..
T Consensus 121 ---------kfi-P~nvfQ~---------~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~ 179 (406)
T KOG3941|consen 121 ---------KFI-PQNVFQK---------VFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVK 179 (406)
T ss_pred ---------ccc-cHHHHHH---------HHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHH
Confidence 110 0111111 11111 1234557889999999999999999999999999887643 344
Q ss_pred HHHHHHh
Q 036263 183 WMHRYVP 189 (305)
Q Consensus 183 ~~~~~~~ 189 (305)
++.-.|-
T Consensus 180 Rm~yWmP 186 (406)
T KOG3941|consen 180 RMLYWMP 186 (406)
T ss_pred HHHHhhh
Confidence 4444443
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.57 E-value=0.21 Score=37.63 Aligned_cols=138 Identities=10% Similarity=-0.004 Sum_probs=99.2
Q ss_pred hHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCC
Q 036263 114 MDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193 (305)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 193 (305)
+.+|.+-++..+.+..--.|..++.+.|+..+|...|.+-..--+.-|......+.++....+++..+...++.+.+...
T Consensus 76 ~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 76 LREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 44555556666655556678899999999999999999876544556788888999999999999999999999877541
Q ss_pred C-CChhHHHHHHHHHHhcCChHHHHHHHHhccc--CchhhHHHHHHHHHhcCChHHHHHHH
Q 036263 194 K-DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYF 251 (305)
Q Consensus 194 ~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~ 251 (305)
. -++...-.+.+.|...|+..+|+.-|+.... |+...--..-..+++.|+.+++..-+
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 0 1233445667888999999999999988874 44433333334456677666654433
No 202
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.57 E-value=0.0084 Score=38.45 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHhcCcCChhHHHHHHHHHh
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQIS----GV-EPD-YLTIISVLNVCANVRTLGIGLWMHRYVP 189 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 189 (305)
|+.+...|...|++++|++.|++..+. |- .|+ ..++..+-..+...|++++|.+.+++..
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444455555555555555443321 10 122 4556666666777777777777766654
No 203
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.45 E-value=0.47 Score=42.10 Aligned_cols=161 Identities=15% Similarity=-0.011 Sum_probs=112.8
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHhcC----cCChhHHHHHHHHHhhcCCCCC
Q 036263 127 CDFWTALLNGFVKRDYFEEALEYFRVMQIS-GVEPDY-----LTIISVLNVCAN----VRTLGIGLWMHRYVPKQDFKDN 196 (305)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 196 (305)
+.....+++..+-.|+-+.+++.+.+-.+. |+.-.. -+|..++..++. ....+.+.++++.+.++ -|+
T Consensus 188 Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~ 265 (468)
T PF10300_consen 188 PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPN 265 (468)
T ss_pred CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCC
Confidence 344667777888889999999999876543 333222 235555554443 45678899999999887 577
Q ss_pred hhHHHHH-HHHHHhcCChHHHHHHHHhccc-------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036263 197 VRVCNTL-MDVYSRFGCIEFARQVFQRMHK-------RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268 (305)
Q Consensus 197 ~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 268 (305)
...|... .+.+...|++++|.+.|++... -....+--+...+...++|++|.+.|.++.+.. ..+..+|.-
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y 344 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAY 344 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHH
Confidence 6666544 5677889999999999997653 133456666777888999999999999999864 224444444
Q ss_pred HHH-HHhccCcH-------HHHHHHHHHHH
Q 036263 269 ALT-ACSHAGLI-------EDGLQYFDIMK 290 (305)
Q Consensus 269 li~-~~~~~g~~-------~~a~~~~~~m~ 290 (305)
+.- ++...|+. ++|.++|.+.-
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 333 33456777 88888888776
No 204
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.41 E-value=0.21 Score=46.97 Aligned_cols=126 Identities=11% Similarity=0.001 Sum_probs=84.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHH
Q 036263 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIIS 167 (305)
Q Consensus 96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ 167 (305)
.+...+.++.+.|++..+++.|..+.-..-+ ...|....-.|.+.++...|..-|+.-.+ +.| |...|..
T Consensus 524 tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~g 601 (1238)
T KOG1127|consen 524 TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLG 601 (1238)
T ss_pred hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHH
Confidence 3455567777788888888888877433221 12233444456667778888877776554 345 7788999
Q ss_pred HHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 168 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
+..+|.+.|+...|.++|.+..... +.+...---..-.-+..|++.+|...++...
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999999998877654 2222222222334467788888888887765
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.28 E-value=0.022 Score=35.84 Aligned_cols=51 Identities=22% Similarity=0.127 Sum_probs=24.4
Q ss_pred HHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 206 VYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
.|.+.+++++|.++++++.. | +...|......+...|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555555555555442 1 333444444445555555555555555444
No 206
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.45 Score=44.00 Aligned_cols=183 Identities=11% Similarity=0.045 Sum_probs=107.2
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM 124 (305)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 124 (305)
......-|..+.+...++-|+.+-+. ...|..+...+.+.| .+-+.+.|++++|...|-+-
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~-----~~~d~d~~~~i~~kY--------------gd~Ly~Kgdf~~A~~qYI~t 394 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKS-----QHLDEDTLAEIHRKY--------------GDYLYGKGDFDEATDQYIET 394 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHh-----cCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHH
Confidence 33444556666666667766665443 223444444444433 34466789999999888766
Q ss_pred CccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHH
Q 036263 125 RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204 (305)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 204 (305)
....-=..+|.-|....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+.-. .|.. ..-....+
T Consensus 395 I~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al 470 (933)
T KOG2114|consen 395 IGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETAL 470 (933)
T ss_pred cccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHH
Confidence 54333345677777777888888888888888854 55666788899999888877776665543 2211 11133445
Q ss_pred HHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254 (305)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 254 (305)
..+.+.+-.++|..+-.+..+ +......+ +-..+++++|++++..+
T Consensus 471 ~Ilr~snyl~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 471 EILRKSNYLDEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhChHHHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 555555555555555444443 22222222 22345566666555543
No 207
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.26 E-value=0.12 Score=45.17 Aligned_cols=150 Identities=16% Similarity=0.175 Sum_probs=101.1
Q ss_pred HhcCChHHHHHHHH------hcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHH
Q 036263 109 AKFGRMDLATVVFD------VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182 (305)
Q Consensus 109 ~~~g~~~~a~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 182 (305)
.-.++++.+.++.+ ..+ ....+.+++-+.+.|..+.|+++...-. .-.....+.|+++.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHH
Confidence 34578888544443 223 3447888999999999999988765422 1233445788888888
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036263 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262 (305)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 262 (305)
++-++. .+...|..|.+...+.|+++-|++.|++.. -|..|+--|...|+.++..++.+.....|-
T Consensus 339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--- 404 (443)
T PF04053_consen 339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERGD--- 404 (443)
T ss_dssp HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHccC---
Confidence 765433 467799999999999999999999999988 466777788889999888888888777652
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263 263 EVSFTGALTACSHAGLIEDGLQYFDI 288 (305)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (305)
++....++.-.|+.++..+++.+
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555566666888877777764
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.19 E-value=0.045 Score=46.17 Aligned_cols=128 Identities=13% Similarity=0.049 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCcCChhHHHHHHHHH----hhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhcc-------cCch--
Q 036263 163 LTIISVLNVCANVRTLGIGLWMHRYV----PKQDFK-DNVRVCNTLMDVYSRFGCIEFARQVFQRMH-------KRTL-- 228 (305)
Q Consensus 163 ~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~~-- 228 (305)
..|..|-+.|.-.|+++.|...++.= .+.|-. .....+..+.+++.-.|+++.|.+.|+... .+.+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666777777788999988776643 222322 234567888999999999999999888754 2333
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH----HCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 229 VSWNSIIVGFAVNGFVGEALEYFNLMQ----KGV-FKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 229 ~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+.-+|...|.-..++++|+.++.+=. +.+ ..-....+++|-.+|...|..+.|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455567777888888999998876622 221 23355788899999999999999988777554
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.17 E-value=0.13 Score=41.64 Aligned_cols=99 Identities=10% Similarity=-0.043 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhccc--C----chhhH
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN----VRVCNTLMDVYSRFGCIEFARQVFQRMHK--R----TLVSW 231 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~ 231 (305)
...|...+....+.|++++|...|+.+.+.- |+ ...+..+..+|...|++++|...|+.+.+ | ....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 3456666665567799999999999998874 33 35778889999999999999999999974 3 23445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036263 232 NSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264 (305)
Q Consensus 232 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 264 (305)
-.+...+...|+.++|..+|+...+. .|+..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 55667788999999999999998885 35443
No 210
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.15 E-value=0.065 Score=42.95 Aligned_cols=97 Identities=16% Similarity=0.214 Sum_probs=74.3
Q ss_pred ccHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC----------------ChhHHHHHHH
Q 036263 128 DFWTALLNGFVK-----RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR----------------TLGIGLWMHR 186 (305)
Q Consensus 128 ~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------------~~~~a~~~~~ 186 (305)
.+|-..+..+.. .+.++-....++.|++.|++-|..+|+.|++.+-+.. +-+-+..+++
T Consensus 68 ~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLe 147 (406)
T KOG3941|consen 68 DSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLE 147 (406)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHH
Confidence 345455544433 3567777788899999999999999999999876543 3355789999
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhcc
Q 036263 187 YVPKQDFKDNVRVCNTLMDVYSRFGC-IEFARQVFQRMH 224 (305)
Q Consensus 187 ~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~ 224 (305)
+|...|+.||..+-..+++++++.+- ..+..++.-.|.
T Consensus 148 qME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 148 QMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 99999999999999999999998776 345555555554
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.08 E-value=0.049 Score=34.23 Aligned_cols=54 Identities=15% Similarity=0.019 Sum_probs=34.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 236 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
..|.+.+++++|.++++++...+ +.+...+.....++.+.|++++|.+.|+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35666677777777777766642 2244455556666667777777777777666
No 212
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.16 Score=41.15 Aligned_cols=96 Identities=11% Similarity=0.006 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhccc---CchhhHHHH
Q 036263 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG---CIEFARQVFQRMHK---RTLVSWNSI 234 (305)
Q Consensus 161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~---~~~~~~~~l 234 (305)
|...|-.|-.+|...|+.+.|...|....+.. +++...+..+..++.... .-.++..+|+++.+ .|+.+-..|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 56666666666777777777766666666553 445555555555444332 24456666666653 244555556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC
Q 036263 235 IVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 235 i~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
...+...|++.+|...|+.|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc
Confidence 66666677777777777776664
No 213
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.03 E-value=0.6 Score=37.42 Aligned_cols=189 Identities=10% Similarity=0.055 Sum_probs=107.5
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV 123 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 123 (305)
+...+-.....+.+.|++++|.+.|+++... .|+...... ..-.+..++.+.++++.|...+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~--------------a~l~la~ayy~~~~y~~A~~~~e~ 94 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQ--------------VQLDLIYAYYKNADLPLAQAAIDR 94 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHH--------------HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3333334455556789999999999999874 444322111 112355677888999999988887
Q ss_pred cCc------cccHHHHHHHHHcCCChHHHHHHHHHHH---HcCCCCC-----HHHHHHHHHHhcCcCChhHHHHHHHHHh
Q 036263 124 MRG------CDFWTALLNGFVKRDYFEEALEYFRVMQ---ISGVEPD-----YLTIISVLNVCANVRTLGIGLWMHRYVP 189 (305)
Q Consensus 124 ~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 189 (305)
..+ ..-|...+.+.+.... ....+.... .....++ ..++..++.-|-...-..+|...+..+.
T Consensus 95 fi~~~P~~~~~~~a~Y~~g~~~~~~---~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~ 171 (243)
T PRK10866 95 FIRLNPTHPNIDYVLYMRGLTNMAL---DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLK 171 (243)
T ss_pred HHHhCcCCCchHHHHHHHHHhhhhc---chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH
Confidence 744 1113233333221000 000000000 0000000 1245555666666666666665555543
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C----chhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036263 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R----TLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255 (305)
Q Consensus 190 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 255 (305)
..= ...--.+.+-|.+.|.+..|..-++.+.+ | .......++.+|...|..++|..+...+.
T Consensus 172 ~~l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 172 DRL----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 321 11122566778889999888888888874 2 34566778899999999999988776654
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=1.3 Score=40.64 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=21.7
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTR 70 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~ 70 (305)
+-.+|..+.......|+++-|..+++.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 456788888888889999999888764
No 215
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.95 E-value=0.4 Score=34.65 Aligned_cols=127 Identities=16% Similarity=0.170 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 209 (305)
-..++..+...+.......+++.+...+ ..+....+.++..|++... ......++. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 4457777777788888888888887776 3566778888888876533 333333332 1233344557777888
Q ss_pred cCChHHHHHHHHhcccCchhhHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN-GFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275 (305)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 275 (305)
.+.++++.-++.++.. |...+..+... ++++.|.+++.+- -+...|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 8888888888877753 23334444444 7788888877751 255677777766654
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.5 Score=38.35 Aligned_cols=96 Identities=7% Similarity=-0.002 Sum_probs=78.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHH
Q 036263 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVN---GFVGEALEYFNLMQKGVFKTDEVSFT 267 (305)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~ 267 (305)
+-|...|..|..+|...|+++.|..-|.+..+ ++...+..+..++... .+-.++..+|+++.+.. +-|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 67899999999999999999999999998874 5667777776665443 34568899999999853 23556677
Q ss_pred HHHHHHhccCcHHHHHHHHHHHH
Q 036263 268 GALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 268 ~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.|...+...|++.+|...|+.|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 77778999999999999999998
No 217
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.84 E-value=0.52 Score=38.97 Aligned_cols=147 Identities=11% Similarity=0.038 Sum_probs=85.1
Q ss_pred chHhHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 44 TTVQWTSSISRHCR--SGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF 121 (305)
Q Consensus 44 ~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 121 (305)
...++.+++..-.. ...+++.+.+++.|++.|.+-+..+|-+..-....... -........|..+|
T Consensus 59 ~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~------------~~~~~~~~ra~~iy 126 (297)
T PF13170_consen 59 HRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEK------------EDYDEIIQRAKEIY 126 (297)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhccc------------ccHHHHHHHHHHHH
Confidence 34444444443332 12245667889999999998888777553322111000 00012456788888
Q ss_pred HhcCc---------cccHHHHHHHHHcCCC----hHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHhcCcCC--hhHHHHH
Q 036263 122 DVMRG---------CDFWTALLNGFVKRDY----FEEALEYFRVMQISGVEPD-Y-LTIISVLNVCANVRT--LGIGLWM 184 (305)
Q Consensus 122 ~~~~~---------~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~g~~p~-~-~t~~~ll~~~~~~~~--~~~a~~~ 184 (305)
+.|++ ..++..++.. ..++ .+.++.+|+.+.+.|+..+ . .....++..+..... ...+..+
T Consensus 127 ~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l 204 (297)
T PF13170_consen 127 KEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIEL 204 (297)
T ss_pred HHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHH
Confidence 88876 3334555443 3333 4567778888888887764 2 333333433332222 3467888
Q ss_pred HHHHhhcCCCCChhHHHHHH
Q 036263 185 HRYVPKQDFKDNVRVCNTLM 204 (305)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~li 204 (305)
++.+.+.|+++....|..+.
T Consensus 205 ~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 205 YNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHcCCccccccccHHH
Confidence 88899999888777766553
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.83 E-value=0.19 Score=43.41 Aligned_cols=62 Identities=10% Similarity=-0.042 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cch----hhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTL----VSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
+...++.+..+|.+.|++++|...|++..+ |+. .+|..+..+|...|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455566666666666666666666666542 332 23666666666666666666666666553
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.80 E-value=0.46 Score=43.14 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=35.5
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 036263 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL 253 (305)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 253 (305)
++-+....-.+.+++.+.|.-++|.+.|=+-..|- ..+..|...++|.+|.++-++
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 45556666677777777777777777666655442 234556666666666666554
No 220
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.75 E-value=0.49 Score=34.18 Aligned_cols=130 Identities=10% Similarity=0.065 Sum_probs=79.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR 125 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 125 (305)
..-..+|..+...+.+......++.+...|. .+...++ .++..|++.+ -....+.++.-.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~------------------~li~ly~~~~-~~~ll~~l~~~~ 67 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQT------------------KLIELYAKYD-PQKEIERLDNKS 67 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHH------------------HHHHHHHHHC-HHHHHHHHHhcc
Confidence 3445788888888999999999999887762 4444444 4444555543 233444444222
Q ss_pred ccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHH
Q 036263 126 GCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205 (305)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 205 (305)
.......+++.|.+.+.++++.-++..+.. .......++. ..++.+.|.++..+- .+...|..++.
T Consensus 68 ~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~---~~~d~~~a~~~~~~~------~~~~lw~~~~~ 133 (140)
T smart00299 68 NHYDIEKVGKLCEKAKLYEEAVELYKKDGN-----FKDAIVTLIE---HLGNYEKAIEYFVKQ------NNPELWAEVLK 133 (140)
T ss_pred ccCCHHHHHHHHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHH---cccCHHHHHHHHHhC------CCHHHHHHHHH
Confidence 233345577777777878787777766532 1122223332 226777777777652 25667777777
Q ss_pred HHHh
Q 036263 206 VYSR 209 (305)
Q Consensus 206 ~~~~ 209 (305)
.+..
T Consensus 134 ~~l~ 137 (140)
T smart00299 134 ALLD 137 (140)
T ss_pred HHHc
Confidence 7654
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.74 E-value=0.74 Score=40.88 Aligned_cols=154 Identities=15% Similarity=0.039 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCc------------cccHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCH
Q 036263 99 MVSTALLDMYAKFGRMDLATVVFDVMRG------------CDFWTALLNGFVK----RDYFEEALEYFRVMQISGVEPDY 162 (305)
Q Consensus 99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~------------~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~ 162 (305)
..+..++...+-.|+-+.+++.+....+ .-.|+.++..++. ....+.|.+++..+.++ -|+.
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s 266 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNS 266 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCc
Confidence 3456677788888999999999887644 2236666665554 35678899999999875 7887
Q ss_pred HHHHHHH-HHhcCcCChhHHHHHHHHHhhcC--C-CCChhHHHHHHHHHHhcCChHHHHHHHHhcccCc---hhhHHHHH
Q 036263 163 LTIISVL-NVCANVRTLGIGLWMHRYVPKQD--F-KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT---LVSWNSII 235 (305)
Q Consensus 163 ~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li 235 (305)
..|...- ..+...|++++|.+.++...... . +.....+--+.-.+.-.+++++|.+.|..+.+.+ ...|.-+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 7775443 34567899999999999765321 1 1233445556777888899999999999998642 33444433
Q ss_pred HH-HHhcCCh-------HHHHHHHHHH
Q 036263 236 VG-FAVNGFV-------GEALEYFNLM 254 (305)
Q Consensus 236 ~~-~~~~g~~-------~~a~~~~~~m 254 (305)
.+ +...|+. ++|.++|++.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 32 4456777 8888888775
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.18 Score=42.48 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHH
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGF 238 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~ 238 (305)
...+..+..++.+.+++..|.+.-......+ +.|....--=..+|...|+++.|+..|+++.+ | |-..-+.++...
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456666677777777777777777777766 66666666667777777777777777777763 4 333333344333
Q ss_pred HhcCChH-HHHHHHHHHHH
Q 036263 239 AVNGFVG-EALEYFNLMQK 256 (305)
Q Consensus 239 ~~~g~~~-~a~~~~~~m~~ 256 (305)
-+...+. ...++|..|-.
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333333 33566666654
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.72 E-value=0.2 Score=43.27 Aligned_cols=61 Identities=11% Similarity=-0.039 Sum_probs=38.9
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcCcCChhHHHHHHHHHhhc
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY----LTIISVLNVCANVRTLGIGLWMHRYVPKQ 191 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 191 (305)
.|+.+..+|.+.|++++|+..|++..+ +.|+. .+|..+..+|...|+.++|...+++..+.
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 366666677777777777777766555 34542 34666666666677777777766666554
No 224
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.69 E-value=0.6 Score=34.79 Aligned_cols=133 Identities=13% Similarity=0.068 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC--hHHHHHHHHhc
Q 036263 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC--IEFARQVFQRM 223 (305)
Q Consensus 146 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~ 223 (305)
..++++.+.+.|+.|+...+..+++.+.+.|++....+ +...++-+|.......+-.+..... .+-|.+++.++
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 34667777888999999999999999999998765444 4556666776665555544433221 33444455544
Q ss_pred ccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 224 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
. ..+..+++.+...|++-+|..+.+...... .++ -..++.+-.+.++...-..+++-..
T Consensus 89 ~----~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 89 G----TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred h----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 346677888999999999999988864432 122 2456777777777777777777666
No 225
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.63 E-value=0.26 Score=40.71 Aligned_cols=145 Identities=12% Similarity=0.111 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC--cCC----hhHHHHHHHHHhhcCC---CCChhHHHHHHHHHHhcCC-
Q 036263 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCAN--VRT----LGIGLWMHRYVPKQDF---KDNVRVCNTLMDVYSRFGC- 212 (305)
Q Consensus 143 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~- 212 (305)
+++.+.+++.|.+.|+.-+..+|-+....... ..+ ...+..+++.|.+... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566777888888888777776653333222 222 3457788888877642 2334455555443 3333
Q ss_pred ---hHHHHHHHHhccc-----C-chhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036263 213 ---IEFARQVFQRMHK-----R-TLVSWNSIIVGFAVNGF--VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281 (305)
Q Consensus 213 ---~~~a~~~~~~~~~-----~-~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 281 (305)
.+.++.+|+.+.+ . +....+.++..+-.... ...+.++++.+.+.|+++....|..+.-...-.+..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 3445666666653 1 22333333332222222 34677778888888888777776554333323333324
Q ss_pred HHHHHHHH
Q 036263 282 GLQYFDIM 289 (305)
Q Consensus 282 a~~~~~~m 289 (305)
...-+.++
T Consensus 236 ~~~~i~ev 243 (297)
T PF13170_consen 236 IVEEIKEV 243 (297)
T ss_pred HHHHHHHH
Confidence 44333333
No 226
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.62 E-value=1.2 Score=37.74 Aligned_cols=210 Identities=14% Similarity=0.042 Sum_probs=111.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccH
Q 036263 56 CRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFW 130 (305)
Q Consensus 56 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~ 130 (305)
.-.|+++.|.+-|+-|.. .| .|--.=++++ .-..-+.|+.+.|...-+..-. ...+
T Consensus 131 l~eG~~~~Ar~kfeAMl~---dP--EtRllGLRgL--------------yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~ 191 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD---DP--ETRLLGLRGL--------------YLEAQRLGAREAARHYAERAAEKAPQLPWAA 191 (531)
T ss_pred HhcCchHHHHHHHHHHhc---Ch--HHHHHhHHHH--------------HHHHHhcccHHHHHHHHHHHHhhccCCchHH
Confidence 347999999999999975 23 2222222221 1112234555544444433322 2334
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcC---------------------------------------CCCCHH-HHHHHHH
Q 036263 131 TALLNGFVKRDYFEEALEYFRVMQISG---------------------------------------VEPDYL-TIISVLN 170 (305)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~g---------------------------------------~~p~~~-t~~~ll~ 170 (305)
...+...+..|+|+.|+++++.-++.. +.||.. .-..-..
T Consensus 192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAr 271 (531)
T COG3898 192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAAR 271 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHH
Confidence 555555666666666666655443321 233311 1222234
Q ss_pred HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH--H--HHHHHhcccCchhhHHHHHHHHHhcCChHH
Q 036263 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF--A--RQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246 (305)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~--a--~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 246 (305)
++.+.|+..++-.+++.+=+....|+ .+ .+..+.+.|+... . .+-++.|+..+..+--.+..+-...|++..
T Consensus 272 alf~d~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ 347 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSA 347 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHH
Confidence 45566666666666666655432222 22 2222344444211 1 122344445566666777777777788777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHHH
Q 036263 247 ALEYFNLMQKGVFKTDEVSFTGALTACS-HAGLIEDGLQYFDIMK 290 (305)
Q Consensus 247 a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~ 290 (305)
|..--+.... ..|....|..+...-. ..|+-.++..++-+..
T Consensus 348 ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 348 ARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 7766655554 4577777777666443 4488888777777665
No 227
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=1.1 Score=41.53 Aligned_cols=226 Identities=11% Similarity=0.024 Sum_probs=135.9
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---NNVMVSTALLDMYAKFGRMDLATVV 120 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~ 120 (305)
...+.+.++.++...+++-.-.-++++..+. ..+|..-+-.....+. ........-++.+++..-++.|..+
T Consensus 282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~-----l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~L 356 (933)
T KOG2114|consen 282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDN-----LIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINL 356 (933)
T ss_pred CccchhheeehhhhcCcccchHHhHHHHHHH-----HHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHH
Confidence 3456677888888877765444444443221 0000000000000111 1122334556667788888888888
Q ss_pred HHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263 121 FDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195 (305)
Q Consensus 121 ~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (305)
-+.-.. .........-+.+.|++++|...|-+-... ++|+ .++.-+.+..+...-..+++.+.+.|+ .
T Consensus 357 Ak~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a 429 (933)
T KOG2114|consen 357 AKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-A 429 (933)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-c
Confidence 766544 223444556677889999999888664432 3443 345566788888888899999999995 5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcccCch-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036263 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL-VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274 (305)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 274 (305)
+...-+.|+.+|.+.++.++-.++.+...+... .-....+..+.+.+-.++|.-+-.+... +......++.
T Consensus 430 ~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille--- 501 (933)
T KOG2114|consen 430 NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLE--- 501 (933)
T ss_pred cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHH---
Confidence 677788999999999999999988887773211 1244556666666666666655444332 2333333333
Q ss_pred ccCcHHHHHHHHHHH
Q 036263 275 HAGLIEDGLQYFDIM 289 (305)
Q Consensus 275 ~~g~~~~a~~~~~~m 289 (305)
..|++++|.++++.+
T Consensus 502 ~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 502 DLHNYEEALRYISSL 516 (933)
T ss_pred HhcCHHHHHHHHhcC
Confidence 346667776666544
No 228
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.56 E-value=1.2 Score=37.18 Aligned_cols=154 Identities=14% Similarity=0.075 Sum_probs=85.8
Q ss_pred HHHHhcCChHHHHHHHHhcCc--cccHHHHH---HHHHcCCChHHHHHHHHHHHHcCCCCCHH----------------H
Q 036263 106 DMYAKFGRMDLATVVFDVMRG--CDFWTALL---NGFVKRDYFEEALEYFRVMQISGVEPDYL----------------T 164 (305)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~--~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----------------t 164 (305)
..|...|+-..|+.-+.++.+ ...+.+-+ ..+.+.|.++.|..=|+...... |+.. .
T Consensus 80 T~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~ 157 (504)
T KOG0624|consen 80 TVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWV 157 (504)
T ss_pred HHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHH
Confidence 344444555555444444433 22222222 34566677777777777666542 2110 1
Q ss_pred HHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc---cCchhhHHHHHHHHHhc
Q 036263 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVN 241 (305)
Q Consensus 165 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 241 (305)
....+..+...|+...|......+.+-. +.|+..|..=..+|...|++..|..=++... ..+..++--+-..+...
T Consensus 158 l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 158 LVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 2223344555666666666666666653 5566666666677777777777665554443 34555555566666667
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH
Q 036263 242 GFVGEALEYFNLMQKGVFKTDEV 264 (305)
Q Consensus 242 g~~~~a~~~~~~m~~~g~~p~~~ 264 (305)
|+.+.++...++..+ +.||..
T Consensus 237 gd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 237 GDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred hhHHHHHHHHHHHHc--cCcchh
Confidence 777777766666666 345553
No 229
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.69 Score=40.52 Aligned_cols=92 Identities=10% Similarity=-0.019 Sum_probs=74.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213 (305)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (305)
...+.+.|++..|+..|.++.... +-|...|.....+|.+.|.+..|..=-+..++.. ++....|.--..++....++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999998874 3378889999999999999999988777777764 44556666666666667789
Q ss_pred HHHHHHHHhcccCc
Q 036263 214 EFARQVFQRMHKRT 227 (305)
Q Consensus 214 ~~a~~~~~~~~~~~ 227 (305)
++|.+.|++..+.|
T Consensus 443 dkAleay~eale~d 456 (539)
T KOG0548|consen 443 DKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988654
No 230
>PRK15331 chaperone protein SicA; Provisional
Probab=94.98 E-value=0.48 Score=35.01 Aligned_cols=84 Identities=14% Similarity=-0.030 Sum_probs=48.1
Q ss_pred hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc---cCchhhHHHHHHHHHhcCChHHHH
Q 036263 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEAL 248 (305)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~ 248 (305)
+...|++++|..+|+-+.-.+ +.+..-+..|..++-..+++++|...|...- ..|...+-....+|...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 345666666666666665554 3344445555555666666666666665443 234444444556666666666666
Q ss_pred HHHHHHHH
Q 036263 249 EYFNLMQK 256 (305)
Q Consensus 249 ~~~~~m~~ 256 (305)
..|+....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66665555
No 231
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.94 E-value=3 Score=38.40 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036263 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278 (305)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 278 (305)
+.+--+.-+...|+..+|.++-++.+-||...|..=+.+++..++|++-.++-+.++. +.-|..++.+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhccc
Confidence 3444455566778888888888888888888888888888888888877776665442 2445556677777777
Q ss_pred HHHHHHHHHHH
Q 036263 279 IEDGLQYFDIM 289 (305)
Q Consensus 279 ~~~a~~~~~~m 289 (305)
.++|.+++...
T Consensus 760 ~~EA~KYiprv 770 (829)
T KOG2280|consen 760 KDEAKKYIPRV 770 (829)
T ss_pred HHHHhhhhhcc
Confidence 77777666544
No 232
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=1.2 Score=36.98 Aligned_cols=53 Identities=4% Similarity=-0.093 Sum_probs=25.0
Q ss_pred HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
++...|-+++|++.-++..+.+ +.|.....++...+--.|++.++.++..+-.
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 3344455555555544444433 3344444444444444555555555544443
No 233
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.65 E-value=1.1 Score=31.87 Aligned_cols=64 Identities=8% Similarity=-0.007 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCC
Q 036263 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296 (305)
Q Consensus 231 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 296 (305)
+...+.....+|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.- +.|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC-ekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC-EKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH-HhchH
Confidence 445677788889989888888887753 35788888888999999999999999998887 66653
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=2 Score=34.10 Aligned_cols=183 Identities=11% Similarity=0.038 Sum_probs=97.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHH----HcCCCCCHHHHH-
Q 036263 103 ALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQ----ISGVEPDYLTII- 166 (305)
Q Consensus 103 ~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~t~~- 166 (305)
-...+|....+++.|...+....+ .-.|...+-..-....+.++..++++.. +.| .|+.....
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtAAmal 114 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTAAMAL 114 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchHHHHH
Confidence 334445566677776666555432 1123333333334444555555554432 223 33332211
Q ss_pred HHHHHhcCcCChhHHHHHHHHHhhc---C--CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--------Cch-hhHH
Q 036263 167 SVLNVCANVRTLGIGLWMHRYVPKQ---D--FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--------RTL-VSWN 232 (305)
Q Consensus 167 ~ll~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~-~~~~ 232 (305)
--..-....-++++|.+++++...- + ...-...+..+-+.+.+..++++|...+.+-.. ++. ..|-
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~v 194 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYV 194 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHH
Confidence 0011123445566666666654321 1 111223455556666677777776665554432 111 2355
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036263 233 SIIVGFAVNGFVGEALEYFNLMQKGV--F-KTDEVSFTGALTACSHAGLIEDGLQYFD 287 (305)
Q Consensus 233 ~li~~~~~~g~~~~a~~~~~~m~~~g--~-~p~~~~~~~li~~~~~~g~~~~a~~~~~ 287 (305)
..|-.+.-..|+..|...++.--+.+ . .-+..+...|+.+|- .|+.+++..++.
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 56666777789999999998854432 2 225578888888884 588888777654
No 235
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.37 E-value=0.84 Score=41.19 Aligned_cols=88 Identities=8% Similarity=0.085 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cchh---------
Q 036263 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLV--------- 229 (305)
Q Consensus 161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~--------- 229 (305)
+..+...+...+.+...+..|.++|..|-.. ..+++.....+++.+|..+-++.++ +|+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 3455666666667778888888998887543 3567888899999999999998875 3332
Q ss_pred --hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 230 --SWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 230 --~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
-|...-++|.+.|+-.+|..+++++...
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2445567789999999999999987653
No 236
>PRK15331 chaperone protein SicA; Provisional
Probab=94.31 E-value=0.59 Score=34.57 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=64.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213 (305)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (305)
...+...|++++|..+|+-+...+. -+..-+..|-.++-..+++++|...|......+ .-|...+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 3445567888999888888766431 234445666666777888899998888776654 34444556667888888999
Q ss_pred HHHHHHHHhccc
Q 036263 214 EFARQVFQRMHK 225 (305)
Q Consensus 214 ~~a~~~~~~~~~ 225 (305)
+.|...|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999998887764
No 237
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.18 E-value=4.4 Score=39.43 Aligned_cols=125 Identities=13% Similarity=0.061 Sum_probs=65.8
Q ss_pred CChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH----HHhcCcCChhHHHHHHHH
Q 036263 112 GRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL----NVCANVRTLGIGLWMHRY 187 (305)
Q Consensus 112 g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~~ 187 (305)
++++.|+.-+..+. ...|.-.+..--+.|-+.+|+.++ .|+...+..+. +.+...+.+++|.-+|+.
T Consensus 894 ~ry~~AL~hLs~~~-~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~ 964 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYER 964 (1265)
T ss_pred HHHHHHHHHHHHcC-ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 45555555554443 223444444444555555555544 34444444333 334455666666666655
Q ss_pred HhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhH---HHHHHHHHhcCChHHHHHHHHHH
Q 036263 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW---NSIIVGFAVNGFVGEALEYFNLM 254 (305)
Q Consensus 188 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m 254 (305)
.-+. .-.+.+|..+|+|++|..+..++..+-.... ..|+.-+...++.-+|-++..+-
T Consensus 965 ~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 965 CGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred hccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 4221 2335667777777777777776664322222 45555566666666655555544
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.12 E-value=0.54 Score=37.65 Aligned_cols=93 Identities=15% Similarity=0.067 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc
Q 036263 47 QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG 126 (305)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 126 (305)
.|+.-+..+ +.|++.+|...|....+.. |+.. | ....+--|..++...|++++|..+|..+.+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y--P~s~-~-------------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY--PNST-Y-------------TPNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC--CCCc-c-------------cchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 577776655 5677999999998888752 2211 1 111223356667777777777777766633
Q ss_pred --------cccHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 036263 127 --------CDFWTALLNGFVKRDYFEEALEYFRVMQIS 156 (305)
Q Consensus 127 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (305)
...+--|..+..+.|+.++|..+|++..++
T Consensus 207 ~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 207 DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 345666666666677777777777666554
No 239
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.12 E-value=2.4 Score=33.80 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=41.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDE---VSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 234 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+.+-|.+.|.+..|..-+++|.+. .+-.. ..+-.+..+|...|-.++|...-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 345588899999999999999886 32222 445666778888999888888877666
No 240
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.07 E-value=1.5 Score=31.18 Aligned_cols=60 Identities=8% Similarity=0.033 Sum_probs=28.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263 132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192 (305)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 192 (305)
.-+..+...|+-+.-.++++++.+. -+++......+..||.+.|+..++.+++.+.-+.|
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344555555555555555554431 24445555555555555555555555555555555
No 241
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.01 E-value=3.8 Score=35.62 Aligned_cols=143 Identities=13% Similarity=0.086 Sum_probs=110.6
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH-HHHH
Q 036263 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC-NTLM 204 (305)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li 204 (305)
..+|...+..-.+..-++.|..+|-+..+.| +.++...++++|..++ .|+...|..+|+.-... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 5568888888888888999999999999998 6678889999998665 56777888998876554 2444444 5567
Q ss_pred HHHHhcCChHHHHHHHHhcccC---c--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036263 205 DVYSRFGCIEFARQVFQRMHKR---T--LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274 (305)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~---~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 274 (305)
..+...++-+.|..+|+....+ + ...|..+|.--..-|+...+..+=++|.. +-|-..+......-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 7788899999999999965532 2 46899999988899999999888888887 4566656555555443
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=1.2 Score=37.74 Aligned_cols=134 Identities=10% Similarity=-0.040 Sum_probs=86.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213 (305)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (305)
...+.+.|++..|..-|++.... + . +.+.-+.++..... ..-..++..+.-+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~-l-~-----------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF-L-E-----------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH-h-h-----------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence 45677888888888887765431 0 0 01111112222111 12245677788889999999
Q ss_pred HHHHHHHHhcc---cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCcH-HHHHHHHHH
Q 036263 214 EFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG-ALTACSHAGLI-EDGLQYFDI 288 (305)
Q Consensus 214 ~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~-~~a~~~~~~ 288 (305)
.+|.+.-.... .+|+...-.=..+|...|+++.|...|+++++ +.|+...... |+..-.+.... +...++|..
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887766 35776666778889999999999999999998 5676655544 44444444433 344778887
Q ss_pred HH
Q 036263 289 MK 290 (305)
Q Consensus 289 m~ 290 (305)
|-
T Consensus 352 mF 353 (397)
T KOG0543|consen 352 MF 353 (397)
T ss_pred Hh
Confidence 76
No 243
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.80 E-value=0.9 Score=36.97 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 036263 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQK-----GVFKTDEVSFTG 268 (305)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 268 (305)
..++..++..+...|+++.+.+.++++.. | +...|..++.+|.+.|+...|...|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34566677777777777777777777763 2 556777777888888877777777777654 478887777666
Q ss_pred HHHH
Q 036263 269 ALTA 272 (305)
Q Consensus 269 li~~ 272 (305)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6655
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.80 E-value=1.2 Score=35.72 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhccc--C----chhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHH
Q 036263 198 RVCNTLMDVYSRFGCIEFARQVFQRMHK--R----TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKT-DEVSFTGA 269 (305)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~l 269 (305)
..|+.-+..| +.|++.+|..-|....+ | ....+--|..++...|++++|..+|..+.+.- -.| -+.++-.|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3577766654 55668888888887764 2 22345557888888888888888888877642 112 22566677
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHh
Q 036263 270 LTACSHAGLIEDGLQYFDIMKKIY 293 (305)
Q Consensus 270 i~~~~~~g~~~~a~~~~~~m~~~~ 293 (305)
..+..+.|+.++|..+|+++.+++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHC
Confidence 777788888888888888887544
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.67 E-value=1.9 Score=31.11 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=26.6
Q ss_pred HhcCChHHHHHHHHhcccC------chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 208 SRFGCIEFARQVFQRMHKR------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
.+.|++++|.+.|+.+... ....--.++.+|.+.+++++|...+++..+.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445566666655555531 2233444555566666666666666555553
No 246
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.56 E-value=0.81 Score=34.65 Aligned_cols=61 Identities=15% Similarity=0.047 Sum_probs=34.4
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcCcCChhHHHHHHHHHh
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPD--YLTIISVLNVCANVRTLGIGLWMHRYVP 189 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 189 (305)
.+..+...|.+.|+.+.|++.|.++.+....|. ...+-.+|......+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 355556666666666666666666655443332 3344555666666666666655555443
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=2.9 Score=34.86 Aligned_cols=150 Identities=11% Similarity=-0.030 Sum_probs=90.7
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc---CCCCChhHHHHHHHHHHhcCChH
Q 036263 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ---DFKDNVRVCNTLMDVYSRFGCIE 214 (305)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~ 214 (305)
...|++.+|...|+++.+. .+-|...+.-.=++|...|+.+.-...++++... ++|....+-....-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3467777777778777654 3446677777777888888877777777776543 33333333344455566778888
Q ss_pred HHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263 215 FARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG---VFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288 (305)
Q Consensus 215 ~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (305)
+|++.-++..+- |.....+....+-..|+..++.++..+-... +.-.-.+-|....-.+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 888887777642 4445555556666666676666665442211 1111223444455555556667777766663
No 248
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.42 E-value=0.13 Score=37.40 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=68.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 036263 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212 (305)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 212 (305)
+|..+.+.+.++....+++.+...+..-+....+.++..|++.+..+....+++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45556666677777777777776555556677777777777777666666665511 11223445566666666
Q ss_pred hHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036263 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278 (305)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 278 (305)
+++|.-++.++...+.. +..+...++++.|.+++.+ .++...|..++..|...+.
T Consensus 86 ~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 66666666655421110 0012222333333322211 2346777777777766543
No 249
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.28 E-value=1.1 Score=36.74 Aligned_cols=98 Identities=11% Similarity=0.002 Sum_probs=53.6
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-Cch-----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036263 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-RTL-----VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265 (305)
Q Consensus 192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 265 (305)
|.+....+...++..-....+++.++..+-++.. |+. .+-...++ ++..-++++++.++..=...|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchhh
Confidence 3444455555555555555566666666655552 111 01111122 2223355666666666666677777777
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 266 FTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+..++..+.+.+++.+|..+.-.|.
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHH
Confidence 7777777777777666666555544
No 250
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.23 E-value=0.26 Score=26.06 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 036263 231 WNSIIVGFAVNGFVGEALEYFNL 253 (305)
Q Consensus 231 ~~~li~~~~~~g~~~~a~~~~~~ 253 (305)
|+.|...|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555556666666666666555
No 251
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.20 E-value=0.66 Score=37.72 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----HhCCCCCcc
Q 036263 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK----IYRVSPQIE 300 (305)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~ 300 (305)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|..+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 4567888999999999999999999999864 45889999999999999999999999998874 467777654
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.12 E-value=3.5 Score=32.76 Aligned_cols=137 Identities=11% Similarity=0.091 Sum_probs=70.6
Q ss_pred HHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHc---C--CCCCHHHHHHHHHHhcCcCCh
Q 036263 104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQIS---G--VEPDYLTIISVLNVCANVRTL 178 (305)
Q Consensus 104 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g--~~p~~~t~~~ll~~~~~~~~~ 178 (305)
....|..+|..+.|-..+++.-+ ....-++++|++++.+-..- + .+.-...+..+-..+.+...+
T Consensus 97 As~lY~E~GspdtAAmaleKAak----------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAK----------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHH----------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 33445666666555555544321 12234455555555543221 0 011123345555556666666
Q ss_pred hHHHHHHHHHh----hcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhccc-------CchhhHHHHHHHHHhcCChHH
Q 036263 179 GIGLWMHRYVP----KQDFKDN-VRVCNTLMDVYSRFGCIEFARQVFQRMHK-------RTLVSWNSIIVGFAVNGFVGE 246 (305)
Q Consensus 179 ~~a~~~~~~~~----~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~ 246 (305)
++|-..+..-. +..-.++ -..|-..|-.|....++..|.+.++.-.+ .+..+...|+.+|- .||.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHH
Confidence 66555443321 1111122 23455666666667778888888877332 25567777777763 566666
Q ss_pred HHHHH
Q 036263 247 ALEYF 251 (305)
Q Consensus 247 a~~~~ 251 (305)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 65554
No 253
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.95 E-value=3.5 Score=32.00 Aligned_cols=169 Identities=12% Similarity=0.038 Sum_probs=100.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---
Q 036263 50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--- 126 (305)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--- 126 (305)
.....+...|++++|.+.|+.+... -|++..- ....-.+..++-+.|+++.|...++++..
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a--------------~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDR--YPNSPYA--------------PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTH--------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 4455667899999999999999875 3332211 11223467778999999999999888643
Q ss_pred ---cccHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263 127 ---CDFWTALLNGFVKRDYFEEALEYFRVMQIS-GVEPD-------YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195 (305)
Q Consensus 127 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~-------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (305)
...+...+.+.+ .+...... ....| ...|..++.-|-......+|...+..+.+.=
T Consensus 74 ~~~~~~~A~Y~~g~~----------~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l--- 140 (203)
T PF13525_consen 74 NSPKADYALYMLGLS----------YYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL--- 140 (203)
T ss_dssp T-TTHHHHHHHHHHH----------HHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH---
T ss_pred CCcchhhHHHHHHHH----------HHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH---
Confidence 111222222221 11111110 00111 3357777888888888888877776664431
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cch----hhHHHHHHHHHhcCChHHHH
Q 036263 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTL----VSWNSIIVGFAVNGFVGEAL 248 (305)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~a~ 248 (305)
...--.+.+.|.+.|.+..|..-++.+.+ |+. ...-.++.+|.+.|..+.+.
T Consensus 141 -a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 141 -AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 22223467788999999999998888875 332 45667788888888877543
No 254
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.51 E-value=1.8 Score=32.85 Aligned_cols=62 Identities=10% Similarity=0.136 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN--VRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
..+..+...|.+.|+.+.|.+.+.++.+....+. ...+-.+|......+++..+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456666666777777777777777666543333 2344556666666666666666665554
No 255
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.42 E-value=0.1 Score=37.97 Aligned_cols=120 Identities=10% Similarity=0.085 Sum_probs=79.5
Q ss_pred HHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHH
Q 036263 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 246 (305)
Q Consensus 167 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 246 (305)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677788899999999999999877667799999999999999888899888884443 333456667777777777
Q ss_pred HHHHHHHHHHCC--CC--CCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263 247 ALEYFNLMQKGV--FK--TDEVSFTGALTACSHAGLIEDGLQYFDIM 289 (305)
Q Consensus 247 a~~~~~~m~~~g--~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m 289 (305)
|..++.++.... +. -...-+...+..+.+.++.+....+.+..
T Consensus 89 a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~ 135 (143)
T PF00637_consen 89 AVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYC 135 (143)
T ss_dssp HHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 777777654321 11 11122333346666666654444444433
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.41 E-value=7.3 Score=34.37 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccc--C---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHK--R---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE-VSFTGALTA 272 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~ 272 (305)
=..+..++.+.|+.++|.+.|++|.+ | +......|+.++...+.+.++..++.+-.+...+.+. .+|+..+-.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 34566667788888888888888864 2 3346677888888888888888888886543322222 455554433
No 257
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.33 E-value=0.37 Score=25.43 Aligned_cols=26 Identities=8% Similarity=-0.133 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 036263 47 QWTSSISRHCRSGCILEAALEFTRMR 72 (305)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~m~ 72 (305)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57889999999999999999999955
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.22 E-value=5.6 Score=32.63 Aligned_cols=223 Identities=9% Similarity=0.043 Sum_probs=123.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc--------
Q 036263 55 HCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-------- 126 (305)
Q Consensus 55 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------- 126 (305)
..+.|+.+.|...+.+........++.....+-+.| |+.-...+.+..+++.|...+++..+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~----------yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVC----------YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHH----------HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence 357899999999999987653233333333443332 45555555554377777666655422
Q ss_pred -----------cccHHHHHHHHHcCCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263 127 -----------CDFWTALLNGFVKRDYFE---EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192 (305)
Q Consensus 127 -----------~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 192 (305)
..+...++.++...+..+ +|..+++.+...... ...++..-+..+.+.++.+++.+++.+|+..-
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 334677888888877655 566666666544222 23445555666666899999999999998863
Q ss_pred CCCChhHHHHHHHHH---HhcCChHHHHHHHHhcc----cCchh-hHHHH-H-HH--HHhcC------ChHHHHHHHHHH
Q 036263 193 FKDNVRVCNTLMDVY---SRFGCIEFARQVFQRMH----KRTLV-SWNSI-I-VG--FAVNG------FVGEALEYFNLM 254 (305)
Q Consensus 193 ~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~~~----~~~~~-~~~~l-i-~~--~~~~g------~~~~a~~~~~~m 254 (305)
......+..++..+ .... ...|...+..+. .+... ....+ + .. ....+ +++...+++...
T Consensus 152 -~~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v 229 (278)
T PF08631_consen 152 -DHSESNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIV 229 (278)
T ss_pred -ccccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence 22334445444444 3333 344555554443 22211 11111 1 11 11211 144455555543
Q ss_pred HHC-CCCCCHHH---HHHHH----HHHhccCcHHHHHHHHHHHH
Q 036263 255 QKG-VFKTDEVS---FTGAL----TACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 255 ~~~-g~~p~~~~---~~~li----~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+. +-+.+..+ ..+++ ..+.+.+++++|.++|+--.
T Consensus 230 ~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 230 EHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 332 22333333 22333 33557899999999998544
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.11 E-value=0.59 Score=25.95 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=10.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHH
Q 036263 132 ALLNGFVKRDYFEEALEYFRVMQI 155 (305)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~ 155 (305)
.+...|.+.|++++|.++|++..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.93 E-value=0.92 Score=25.14 Aligned_cols=28 Identities=14% Similarity=0.149 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 230 SWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
+|..+..+|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777777664
No 261
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.77 E-value=7.6 Score=33.21 Aligned_cols=163 Identities=12% Similarity=0.028 Sum_probs=102.3
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHcCC--CC-CHHHHHHHHHHhcC---cCChhHHHHHHHHHhhcCCCCChhHHH
Q 036263 128 DFWTALLNGFVKRDYFEEALEYFRVMQISGV--EP-DYLTIISVLNVCAN---VRTLGIGLWMHRYVPKQDFKDNVRVCN 201 (305)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p-~~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 201 (305)
.+--.++-+|....+++...++.+.|..... .+ ....---..-++-+ .|+.++|.+++..+....-.+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3344566679999999999999999976410 11 11111223345556 899999999999966666688899998
Q ss_pred HHHHHHHh---------cCChHHHHHHHHhcccCchhhHHHH--HHHHHhcC-ChH---HHHHHH---H-HHHHCC---C
Q 036263 202 TLMDVYSR---------FGCIEFARQVFQRMHKRTLVSWNSI--IVGFAVNG-FVG---EALEYF---N-LMQKGV---F 259 (305)
Q Consensus 202 ~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~l--i~~~~~~g-~~~---~a~~~~---~-~m~~~g---~ 259 (305)
.+...|-. ...+++|...|.+.=+-+...|+-+ ...+...| +.+ +..++- . ...+.| -
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 88887753 1236778888777654322222211 11112222 222 222222 2 222333 2
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 260 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
..|-.-+..++.++.-.|+.+.|.+..+.|.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3466777888899999999999999999998
No 262
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.74 E-value=8.4 Score=33.61 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=77.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHH-HHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---cccH
Q 036263 55 HCRSGCILEAALEFTRMRLYGTNPSHITFV-TLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---CDFW 130 (305)
Q Consensus 55 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~ 130 (305)
+-+.+++++|..+|.+..+. ..-++..+. -++. +.++++|.- .+++.....+..... ...|
T Consensus 16 Lqkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~-------------grilnAffl-~nld~Me~~l~~l~~~~~~s~~ 80 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLG-------------GRILNAFFL-NNLDLMEKQLMELRQQFGKSAY 80 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHh-------------hHHHHHHHH-hhHHHHHHHHHHHHHhcCCchH
Confidence 34678999999999988765 233333332 1221 344455543 344444443333322 4445
Q ss_pred HHHHHH--HHcCCChHHHHHHHHHHHHc--CCCCC------------HHHHHHHHHHhcCcCChhHHHHHHHHHhhc---
Q 036263 131 TALLNG--FVKRDYFEEALEYFRVMQIS--GVEPD------------YLTIISVLNVCANVRTLGIGLWMHRYVPKQ--- 191 (305)
Q Consensus 131 ~~li~~--~~~~g~~~~a~~~~~~m~~~--g~~p~------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 191 (305)
-.+..+ +-+.+.+++|.+.+..-.++ +.+|. -.-=+..+.++...|++.+++.+++++...
T Consensus 81 l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk 160 (549)
T PF07079_consen 81 LPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK 160 (549)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
Confidence 555544 33556777777777655543 32221 111234556667788888888777776544
Q ss_pred -CCCCChhHHHHHHHHHHh
Q 036263 192 -DFKDNVRVCNTLMDVYSR 209 (305)
Q Consensus 192 -~~~~~~~~~~~li~~~~~ 209 (305)
....+..+|+.++-.+++
T Consensus 161 rE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 161 RECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred hhhcccHHHHHHHHHHHhH
Confidence 334677777776655554
No 263
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.71 E-value=6.4 Score=32.17 Aligned_cols=133 Identities=9% Similarity=0.007 Sum_probs=89.5
Q ss_pred ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHhcC-cC-ChhHHHHHHHHHhh-cCCCCChhHHHHHHHHHHhcCChHHHH
Q 036263 142 YFEEALEYFRVMQI-SGVEPDYLTIISVLNVCAN-VR-TLGIGLWMHRYVPK-QDFKDNVRVCNTLMDVYSRFGCIEFAR 217 (305)
Q Consensus 142 ~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~ 217 (305)
.+.+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+.+.. .+-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35566666663322 2355567777777776655 22 23333444444443 234778888889999999999999999
Q ss_pred HHHHhccc-----CchhhHHHHHHHHHhcCChHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHh
Q 036263 218 QVFQRMHK-----RTLVSWNSIIVGFAVNGFVGEALEYFNL-----MQKGVFKTDEVSFTGALTACS 274 (305)
Q Consensus 218 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~p~~~~~~~li~~~~ 274 (305)
+++..... .|...|..+|+.-...|+..-...+.++ +++.|+..+...-..+-+.|.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 99887653 4778899999999999999888877766 345566666666555544443
No 264
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.55 E-value=0.28 Score=25.59 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=15.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHH
Q 036263 194 KDNVRVCNTLMDVYSRFGCIEFAR 217 (305)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~a~ 217 (305)
|-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445666666666666666666664
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.49 E-value=3.2 Score=29.53 Aligned_cols=87 Identities=13% Similarity=-0.039 Sum_probs=46.2
Q ss_pred HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc----Cch---hhHHHHHHHHHhcCC
Q 036263 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----RTL---VSWNSIIVGFAVNGF 243 (305)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~---~~~~~li~~~~~~g~ 243 (305)
++...|+.+.|.+.|.+....- +-....||.=.+++.-.|+.++|.+-+.+..+ .+- ..|-.-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3455666666666666555442 34455666666666666666666665555442 111 122222333455566
Q ss_pred hHHHHHHHHHHHHCC
Q 036263 244 VGEALEYFNLMQKGV 258 (305)
Q Consensus 244 ~~~a~~~~~~m~~~g 258 (305)
-+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666655555
No 266
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.47 E-value=8.7 Score=34.77 Aligned_cols=102 Identities=19% Similarity=0.077 Sum_probs=64.9
Q ss_pred HHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHH
Q 036263 108 YAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 187 (305)
..+.|+++.|.++..+..+..-|..|..+..+.|++..|.+.|...+. |..|+-.+...|+.+....+-..
T Consensus 647 al~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 345677777777777776666777777777777777777777765432 45556666666666655555555
Q ss_pred HhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 188 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
..+.| . .|...-+|...|+++++.+++.+-.
T Consensus 718 ~~~~g-~-----~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 718 AKKQG-K-----NNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHhhc-c-----cchHHHHHHHcCCHHHHHHHHHhcC
Confidence 55554 2 2333345566677777777765543
No 267
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.33 E-value=2.5 Score=38.02 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=60.1
Q ss_pred hcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHh
Q 036263 110 KFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189 (305)
Q Consensus 110 ~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 189 (305)
-.|+++.|..++..++ ...-+.++..+.+.|..++|+++- ..|+. -| ....+.|+++.|.++..+.
T Consensus 598 mrrd~~~a~~vLp~I~-k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e~- 663 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-KEIRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVEA- 663 (794)
T ss_pred hhccccccccccccCc-hhhhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHhh-
Confidence 3478888887777776 445566777777777777765542 12221 11 1224567777776665443
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 190 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
-+..-|..|.++..+.|++..|.+.|.+..
T Consensus 664 -----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 664 -----NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred -----cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 234557777777777777777777777665
No 268
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.32 E-value=4.9 Score=30.16 Aligned_cols=120 Identities=9% Similarity=0.063 Sum_probs=55.8
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChh-HHHHH--HHHHHhcCCh
Q 036263 138 VKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR-VCNTL--MDVYSRFGCI 213 (305)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~ 213 (305)
.+.++.++|+.-|..+.+.|...- .-.---.-......|+...|...|++.-+..-.|-.. -..-| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 344556666666666655543210 1111112223345566666666666655443223221 11111 1123455666
Q ss_pred HHHHHHHHhcccC----chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 214 EFARQVFQRMHKR----TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 214 ~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
+......+.+..+ -...-..|--+-.+.|++.+|..+|..+...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6665555555422 1122234444555666666666666665553
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.22 E-value=0.66 Score=23.84 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 230 SWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 230 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555554
No 270
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=90.96 E-value=4.7 Score=29.27 Aligned_cols=94 Identities=10% Similarity=0.169 Sum_probs=65.3
Q ss_pred HhhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhccc---------CchhhHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 036263 188 VPKQDFKDNV--RVCNTLMDVYSRFGCIEFARQVFQRMHK---------RTLVSWNSIIVGFAVNGF-VGEALEYFNLMQ 255 (305)
Q Consensus 188 ~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 255 (305)
|.+.+..++. ...++++......+++.....+++.+.. .+-.+|++++.+.....- --.+..+|+-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3434444443 2346666666666777777777766642 355688999999866655 345677889999
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHH
Q 036263 256 KGVFKTDEVSFTGALTACSHAGLIED 281 (305)
Q Consensus 256 ~~g~~p~~~~~~~li~~~~~~g~~~~ 281 (305)
+.+.+++..-|..++.++.+....+.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 88899999999999999988644433
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.53 E-value=8.6 Score=31.56 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=97.2
Q ss_pred HHhcCChHHHHHHHHhcCc--------------cccHHHHHHHHHcCCChHHHHHHHHHHHHc--------CCCCC----
Q 036263 108 YAKFGRMDLATVVFDVMRG--------------CDFWTALLNGFVKRDYFEEALEYFRVMQIS--------GVEPD---- 161 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~p~---- 161 (305)
..+.|+++.|..++.+... ...|+.-.+.+.+..+++.|...+++..+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3567899999988888755 222555555555544888887777655332 12333
Q ss_pred -HHHHHHHHHHhcCcCChhH---HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHH
Q 036263 162 -YLTIISVLNVCANVRTLGI---GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSI 234 (305)
Q Consensus 162 -~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l 234 (305)
..++..++.++...+..+. |..+++.+... .+-...++-.-+..+.+.++.+++.+++.+|... ....+..+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 4567778888888777654 55566666443 2333556666677777789999999999999742 33445555
Q ss_pred HHHH---HhcCChHHHHHHHHHHHHCCCCCCHH
Q 036263 235 IVGF---AVNGFVGEALEYFNLMQKGVFKTDEV 264 (305)
Q Consensus 235 i~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~ 264 (305)
+..+ ... ....|...++.+...-+.|...
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChh
Confidence 5544 443 3456666666665554555553
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.33 E-value=12 Score=33.05 Aligned_cols=164 Identities=9% Similarity=0.062 Sum_probs=91.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCcccc
Q 036263 50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF 129 (305)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 129 (305)
.+|.-..+..+++.-++.=.+..+ +.||-.+.-.++. --....+.++++++++..+..-
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLA-------------------EEeA~Ti~Eae~l~rqAvkAgE 231 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLA-------------------EEEASTIVEAEELLRQAVKAGE 231 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhcc-------------------cccccCHHHHHHHHHHHHHHHH
Confidence 445555566666666666655554 4555433322221 1234567888888887643110
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCC-CChhHHHHHHHHHH
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-DNVRVCNTLMDVYS 208 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~ 208 (305)
..+.+....+..-..++....+...|-..+-..+..++-+.|+.++|.+.+++|.+..-. .+..+...|+.++.
T Consensus 232 -----~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL 306 (539)
T PF04184_consen 232 -----ASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL 306 (539)
T ss_pred -----HhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH
Confidence 000000000000011122222223333344445666777889999999999998765322 23457788999999
Q ss_pred hcCChHHHHHHHHhcccC-----chhhHHHHHHHHH
Q 036263 209 RFGCIEFARQVFQRMHKR-----TLVSWNSIIVGFA 239 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~ 239 (305)
..+.+.++..++.+-.+- -...|+..+-.+.
T Consensus 307 elq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 307 ELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred hcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 999999999998887642 3356776654443
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.09 E-value=8 Score=32.74 Aligned_cols=162 Identities=14% Similarity=0.111 Sum_probs=99.6
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHH-cCCCC---CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC-----CCCChhH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQI-SGVEP---DYLTIISVLNVCANVRTLGIGLWMHRYVPKQD-----FKDNVRV 199 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 199 (305)
.|-.+.+++.+..++.+++.+-+.-.. .|..| ......++-.+....+.++++.+.|+...+-- -.....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 355566666665566666555544322 12223 12334556777788888999988888765421 1223567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccc-------Cch------hhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHK-------RTL------VSWNSIIVGFAVNGFVGEALEYFNLMQK----GVFKT- 261 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p- 261 (305)
|-.|-..|.+..++++|.-+..+..+ .|. .+.-.|..++...|....|.+.-++..+ .|-+|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 88888889998898887766555442 222 1233455677888888888888777543 34222
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 262 DEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
-......+...|-..|+.|.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22334455566777888888887777654
No 274
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.52 E-value=2.8 Score=27.95 Aligned_cols=45 Identities=9% Similarity=0.036 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
++.+-++.+...++.|++.+..+.+++|.+.+++.-|.++|+-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455556666666677777777777777777777777777777665
No 275
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.39 E-value=1.1 Score=24.06 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 036263 230 SWNSIIVGFAVNGFVGEALEYFNLM 254 (305)
Q Consensus 230 ~~~~li~~~~~~g~~~~a~~~~~~m 254 (305)
+++.+...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4455555555555555555555554
No 276
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.38 E-value=1.9 Score=28.99 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=20.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 248 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+-++.+....+.|++....+.+++|-+..++..|..+|+.++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555555555554
No 277
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=89.30 E-value=11 Score=31.06 Aligned_cols=192 Identities=12% Similarity=0.109 Sum_probs=103.1
Q ss_pred CchHhHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhc-CCCCCChhHHHHHHH-HHHhcCC-hHHH
Q 036263 43 DTTVQWTSSISRHC--RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-DFPSNNVMVSTALLD-MYAKFGR-MDLA 117 (305)
Q Consensus 43 ~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~~~~~~ll~-~~~~~g~-~~~a 117 (305)
|.+..++-+|+-|. ..+--++..+++.-++ |..++...--.++.+.. ..|.|...+++.|.. .+.+.|= ..-|
T Consensus 109 ~~~qvf~KliRRykyLeK~fE~e~~k~Llflk--~F~e~Er~KLA~~Tal~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~ 186 (412)
T KOG2297|consen 109 NSVQVFQKLIRRYKYLEKNFENEMRKFLLFLK--LFEENERKKLAMLTALLLSNGTLPATVLQSLLNDNLVKEGIALSFA 186 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhHHHHhHHHHHH
Confidence 56677787776543 2332333333333332 57788777777777654 345577777766653 3344442 3456
Q ss_pred HHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------------------------
Q 036263 118 TVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV-------------------------- 171 (305)
Q Consensus 118 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-------------------------- 171 (305)
.++|+........+.+++.+.+.+.-+.-+++| +|+..+.-..-..
T Consensus 187 ~~lFk~~~~Ek~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq 258 (412)
T KOG2297|consen 187 VKLFKEWLVEKDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQ 258 (412)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 777877766666788888887766544444433 3332222222111
Q ss_pred ------hcCcCChhHHHHHH-HHHhhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhc
Q 036263 172 ------CANVRTLGIGLWMH-RYVPKQDFKDN---VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN 241 (305)
Q Consensus 172 ------~~~~~~~~~a~~~~-~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 241 (305)
..+...++++.... ++|.+.+++-. ..+|..++++- .|.+-.++..+-.-+.+..|..|+.+++..
T Consensus 259 ~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsav----eWnKkeelva~qalrhlK~yaPLL~af~s~ 334 (412)
T KOG2297|consen 259 KELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAV----EWNKKEELVAEQALRHLKQYAPLLAAFCSQ 334 (412)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHH----hhchHHHHHHHHHHHHHHhhhHHHHHHhcC
Confidence 12222333333333 33444454322 23466666553 333333322222223455899999999999
Q ss_pred CChHHHH
Q 036263 242 GFVGEAL 248 (305)
Q Consensus 242 g~~~~a~ 248 (305)
|+.+-.+
T Consensus 335 g~sEL~L 341 (412)
T KOG2297|consen 335 GQSELEL 341 (412)
T ss_pred ChHHHHH
Confidence 9987654
No 278
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.85 E-value=8.1 Score=28.89 Aligned_cols=121 Identities=13% Similarity=0.096 Sum_probs=80.1
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 036263 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206 (305)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 206 (305)
...|..++..+.+.|++.. +.++...++-+|+......+-.+... ...+.++=-.|.++= ...+..++..
T Consensus 29 ~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLkRL----~~~~~~iiev 98 (167)
T PF07035_consen 29 HELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLKRL----GTAYEEIIEV 98 (167)
T ss_pred HHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHHHh----hhhHHHHHHH
Confidence 4457788888888887554 45566677788877776666544432 233333333333320 1246778889
Q ss_pred HHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
+...|++-+|.++.+....-+...-..++.+....+|...-..+++-....
T Consensus 99 LL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 99 LLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999876555555567788888888777666666655543
No 279
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.72 E-value=5.6 Score=26.85 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
+..+-++.+...++.|++.+..+.+++|.+.+++.-|.++|+-++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455556666667777778888888888888888888888877776
No 280
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.72 E-value=1.2 Score=23.86 Aligned_cols=29 Identities=10% Similarity=-0.119 Sum_probs=25.0
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036263 45 TVQWTSSISRHCRSGCILEAALEFTRMRL 73 (305)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 73 (305)
..+++.+-..|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 46789999999999999999999998765
No 281
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.52 E-value=12 Score=30.61 Aligned_cols=140 Identities=10% Similarity=0.070 Sum_probs=86.8
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 036263 136 GFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215 (305)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 215 (305)
.....|++.+|..+|+...... .-+...-..+..++...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4556788888888888776642 123556667788888889998888888887544322223332333455555555555
Q ss_pred HHHHHHhcc-cC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccC
Q 036263 216 ARQVFQRMH-KR-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG--VFKTDEVSFTGALTACSHAG 277 (305)
Q Consensus 216 a~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g 277 (305)
...+-++.. .| |...--.+...+...|+.+.|.+.+-.+.+. |.. |...=..++..|.--|
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 555544444 34 5556666777888889999888876665544 332 3344445555555445
No 282
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.44 E-value=1.5 Score=22.31 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 232 NSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 232 ~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
..+...+...|++++|.+.|++..+
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444555555554444443
No 283
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.34 E-value=8 Score=28.20 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=42.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCH---hhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCccc---c
Q 036263 56 CRSGCILEAALEFTRMRLYGTNPSH---ITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD---F 129 (305)
Q Consensus 56 ~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~ 129 (305)
...++++++..+++.|+- +.|+. .+|...+ +...|+|++|.++|+.+.+.. .
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--------------------~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWL--------------------LIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHH--------------------HHHcCCHHHHHHHHHhhhccCCCch
Confidence 348899999999999986 55653 3333333 567899999999999998733 3
Q ss_pred HHHHHHHHH
Q 036263 130 WTALLNGFV 138 (305)
Q Consensus 130 ~~~li~~~~ 138 (305)
|..-+.++|
T Consensus 79 ~~kAL~A~C 87 (153)
T TIGR02561 79 YGKALLALC 87 (153)
T ss_pred HHHHHHHHH
Confidence 444444443
No 284
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.31 E-value=1.4 Score=22.59 Aligned_cols=28 Identities=14% Similarity=-0.064 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRL 73 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 73 (305)
.+|..+-..+...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4688889999999999999999999887
No 285
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.67 E-value=3.5 Score=33.99 Aligned_cols=91 Identities=14% Similarity=0.031 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036263 101 STALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC 172 (305)
Q Consensus 101 ~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (305)
...++..-....+++.++..+=.++. ..+-.++++.+-+ -+.++++.++..=...|+-||-.++..+|+.+
T Consensus 67 Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~f 145 (418)
T KOG4570|consen 67 VDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSF 145 (418)
T ss_pred hhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHH
Confidence 34444445556778888877766654 2223334444433 45778888888888899999999999999999
Q ss_pred cCcCChhHHHHHHHHHhhcC
Q 036263 173 ANVRTLGIGLWMHRYVPKQD 192 (305)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~ 192 (305)
.+.++..+|.++.-.|....
T Consensus 146 lk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 146 LKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HhcccHHHHHHHHHHHHHHH
Confidence 99999999988888776654
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.18 E-value=10 Score=28.08 Aligned_cols=116 Identities=7% Similarity=-0.103 Sum_probs=64.6
Q ss_pred HHHHHHHH---HhcCcCChhHHHHHHHHHhhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhcccCch-hhHH-HHHH
Q 036263 163 LTIISVLN---VCANVRTLGIGLWMHRYVPKQDFKDNVR-VCNTLMDVYSRFGCIEFARQVFQRMHKRTL-VSWN-SIIV 236 (305)
Q Consensus 163 ~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~li~ 236 (305)
.+.+.|+. .-...++.+++..+++.+.-.. |... .-..-...+...|++.+|.++|+++..... ..|. .|+.
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34444444 4467789999999999887753 4332 223334556789999999999999985332 2333 3433
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 036263 237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283 (305)
Q Consensus 237 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 283 (305)
.|....+-..=..+-+++.+.+-.|+.. .+++.+....+...|.
T Consensus 86 ~CL~~~~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 86 LCLYALGDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHcCChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchh
Confidence 3333332222223344456655333333 3455555544444443
No 287
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.16 E-value=15 Score=30.07 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=99.2
Q ss_pred CCCCCCHhhHHHHHHhhcCCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhc-------CccccHHHHHHHHHc-CC-Ch
Q 036263 74 YGTNPSHITFVTLLSGCADFPSNNVM-VSTALLDMYAKFGRMDLATVVFDVM-------RGCDFWTALLNGFVK-RD-YF 143 (305)
Q Consensus 74 ~g~~p~~~~~~~ll~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~-------~~~~~~~~li~~~~~-~g-~~ 143 (305)
.|.++...-+..++..+...-.++.. -|..|+ .+...+.+|+++|+.. .+..+-..+++.... .+ ..
T Consensus 106 ~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LV---k~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l 182 (292)
T PF13929_consen 106 MGCELTKEDLISFLKLVIINLSSNKSFNYWDLV---KRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKL 182 (292)
T ss_pred cCCCCcHHHHHHHHHHHHhccccccchHHHHHH---HhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccch
Confidence 47777777776666665443332221 133332 2334567888888832 124445566666655 22 22
Q ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc-CCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263 144 EEALEYFRVMQ-ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLMDVYSRFGCIEFARQVFQ 221 (305)
Q Consensus 144 ~~a~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 221 (305)
..-.++.+-+. ..|-.++..+...++..+++.+++....++++..... +..-|...|..+|+.-.+.|+..-..++..
T Consensus 183 ~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 183 NALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred hhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 22333444433 3356788999999999999999999999999988766 566788999999999999999988888877
Q ss_pred hc
Q 036263 222 RM 223 (305)
Q Consensus 222 ~~ 223 (305)
+=
T Consensus 263 ~G 264 (292)
T PF13929_consen 263 DG 264 (292)
T ss_pred CC
Confidence 64
No 288
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=86.75 E-value=7.1 Score=34.10 Aligned_cols=167 Identities=14% Similarity=0.136 Sum_probs=84.5
Q ss_pred ChHHHHHHHHhcCccccHHHHHHHHHcCC-----------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHH
Q 036263 113 RMDLATVVFDVMRGCDFWTALLNGFVKRD-----------YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG 181 (305)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 181 (305)
++++|....+.+++...+...+...-+.| .+++-.++++.+.+.| .+| ....-|++|.+.+++++|
T Consensus 29 d~~eav~y~k~~p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A 105 (480)
T TIGR01503 29 DLQDAVDYHKSIPAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEA 105 (480)
T ss_pred CHHHHHHHHHhCCccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHH
Confidence 67788888888777555555544433322 3555666666665554 222 233445666666666666
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036263 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSR-FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 260 (305)
...+++-.+.|.. ++++|=- ..-++.+.++.+....|= -.++|. ..+..+++-+...|+.
T Consensus 106 ~~~l~~s~~~~~s--------~LNGfP~VnhGv~~~R~l~~~v~~Pv----------QvRHGt-pDarlL~e~~~a~G~~ 166 (480)
T TIGR01503 106 AVGIKESIKAGRS--------LLNGFPGVNHGVKGCRKVLEAVNLPL----------QIRHGT-PDARLLAEIILAGGFT 166 (480)
T ss_pred HHHHHhhhhcCcc--------cccCCCcccccHHHHHHHHHhCCCCe----------eccCCC-CcHHHHHHHHHHcCCC
Confidence 6666655543310 0111100 011344444444443221 123342 3456666666666643
Q ss_pred CC---HHHHHHHHHHHhccCcHHHHHHHHH-------HHHHHhCCCCCccccccC
Q 036263 261 TD---EVSFTGALTACSHAGLIEDGLQYFD-------IMKKIYRVSPQIEHHGCI 305 (305)
Q Consensus 261 p~---~~~~~~li~~~~~~g~~~~a~~~~~-------~m~~~~~~~p~~~~y~~l 305 (305)
-. ..+|+. -|++.=-+++++..|+ ... +.|+..+.++|++|
T Consensus 167 a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~-e~gv~InrE~FGpL 217 (480)
T TIGR01503 167 SFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYE-EQGVHINREPFGPL 217 (480)
T ss_pred ccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHH-hcCceeccccccCC
Confidence 32 234432 2343333444444443 333 56999999999875
No 289
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=86.74 E-value=12 Score=28.47 Aligned_cols=188 Identities=16% Similarity=0.083 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCc-------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 036263 100 VSTALLDMYAKFGRMDLATVVFDVMRG-------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN-V 171 (305)
Q Consensus 100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~-~ 171 (305)
.+......+...+.+..+...+..... ...+......+...+.+..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 344555567777888888877766542 3345566667777788888999888877644333 122222222 7
Q ss_pred hcCcCChhHHHHHHHHHhhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhcccC----chhhHHHHHHHHHhcCChH
Q 036263 172 CANVRTLGIGLWMHRYVPKQDF--KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR----TLVSWNSIIVGFAVNGFVG 245 (305)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~ 245 (305)
+...|+++.+...+........ ......+......+...++.+.+...+.+..+. ....+..+...+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 8899999999999999855321 123444555555577888999999999888742 2566888888888999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 246 EALEYFNLMQKGVFKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 246 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.|...+...... .|+ ...+..+...+...+..+.+...+....
T Consensus 220 ~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 220 EALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998874 343 3444444444446677888888877766
No 290
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.66 E-value=10 Score=27.50 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=25.3
Q ss_pred hcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 036263 110 KFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQI 155 (305)
Q Consensus 110 ~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (305)
+.|++++|.+.|+.+.. ...--.++.++.+.|++++|...+++..+
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44666666666665544 22234455566666666666666655554
No 291
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.56 E-value=1.6 Score=22.16 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 264 VSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 264 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
..+..+-..+...|++++|++.|++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456677888999999999999999887
No 292
>PRK11906 transcriptional regulator; Provisional
Probab=86.16 E-value=23 Score=31.16 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=21.5
Q ss_pred HhH--HHHHHHHHhcC-----ChhHHHHHHHHHHhC-CCCCC
Q 036263 46 VQW--TSSISRHCRSG-----CILEAALEFTRMRLY-GTNPS 79 (305)
Q Consensus 46 ~~~--~~li~~~~~~~-----~~~~a~~~~~~m~~~-g~~p~ 79 (305)
..| ...+.+..... ..+.|+.+|.+.... .+.|+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~ 293 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL 293 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc
Confidence 566 66777766522 345678888888732 35665
No 293
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=85.80 E-value=22 Score=30.59 Aligned_cols=78 Identities=14% Similarity=0.002 Sum_probs=55.3
Q ss_pred cCChHHHHHHHHhcCc-ccc----HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHH
Q 036263 111 FGRMDLATVVFDVMRG-CDF----WTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWM 184 (305)
Q Consensus 111 ~g~~~~a~~~~~~~~~-~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~ 184 (305)
.|+.+.|.+-|+.|.+ ..+ ...|.-..-+.|..+.|.++-+.--+ ..|. .......+...+..|+++.|.++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 4888899999988865 121 33444445667888888777766543 3443 56778888889999999999988
Q ss_pred HHHHhh
Q 036263 185 HRYVPK 190 (305)
Q Consensus 185 ~~~~~~ 190 (305)
.+.-..
T Consensus 211 vd~~~~ 216 (531)
T COG3898 211 VDAQRA 216 (531)
T ss_pred HHHHHH
Confidence 876544
No 294
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.40 E-value=21 Score=30.09 Aligned_cols=65 Identities=14% Similarity=-0.010 Sum_probs=41.4
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT---DEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
....+|..+.+.+.+.|+++.|...+.++...+..+ ++...-.-.+..-..|+.++|...++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445677777788888888888888777776643111 22333333455555677777777777766
No 295
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.25 E-value=17 Score=28.86 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=16.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC
Q 036263 238 FAVNGFVGEALEYFNLMQKGVFK 260 (305)
Q Consensus 238 ~~~~g~~~~a~~~~~~m~~~g~~ 260 (305)
-+..+++.+|+.+|++.....+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567888888888887775443
No 296
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=84.86 E-value=12 Score=26.75 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=52.1
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHH---HHHHHhc
Q 036263 135 NGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL---MDVYSRF 210 (305)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~ 210 (305)
-++...|+++.|++.|.+...- -| ....||.-..++.-.|+.++|..=+++..+..-.-+.....+. ...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3566677777777777766552 33 5667777777777777777777766666553212222222222 2345556
Q ss_pred CChHHHHHHHHhcc
Q 036263 211 GCIEFARQVFQRMH 224 (305)
Q Consensus 211 g~~~~a~~~~~~~~ 224 (305)
|+-+.|..-|+...
T Consensus 129 g~dd~AR~DFe~AA 142 (175)
T KOG4555|consen 129 GNDDAARADFEAAA 142 (175)
T ss_pred CchHHHHHhHHHHH
Confidence 66677766665544
No 297
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.73 E-value=2.1 Score=21.80 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 036263 231 WNSIIVGFAVNGFVGEALEYFNLMQ 255 (305)
Q Consensus 231 ~~~li~~~~~~g~~~~a~~~~~~m~ 255 (305)
|..+...|...|++++|.+.|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444455555555444443
No 298
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.71 E-value=21 Score=29.38 Aligned_cols=117 Identities=10% Similarity=0.011 Sum_probs=81.8
Q ss_pred HHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC-chhhH---HHHHHHHHhcCChH
Q 036263 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR-TLVSW---NSIIVGFAVNGFVG 245 (305)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~---~~li~~~~~~g~~~ 245 (305)
......|++.+|...|+...... +-+...--.+..+|...|+.+.|..++..++.. ...-+ ..-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34578899999999999888764 444667778899999999999999999999842 11222 22344455555555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 246 EALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 246 ~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+...+-.+... .| |...--.+...+...|+.+.|.+.+=.+.
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555544 25 55555567777888899888887665554
No 299
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.70 E-value=2.2 Score=20.46 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=8.4
Q ss_pred HHHHHHhcCChHHHHHHH
Q 036263 203 LMDVYSRFGCIEFARQVF 220 (305)
Q Consensus 203 li~~~~~~g~~~~a~~~~ 220 (305)
+..++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444444444444444
No 300
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.67 E-value=31 Score=31.29 Aligned_cols=178 Identities=10% Similarity=0.019 Sum_probs=119.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHH
Q 036263 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGV--EPDYLTIISV 168 (305)
Q Consensus 96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~l 168 (305)
++..+|...++.-.+.|+.+.+.-+|++..- ...|-..+.-....|+.+.|..++..-.+--+ .|....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4566888889999999999999999998854 34455566666666999988888766544322 2223333333
Q ss_pred HHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHH---HHHHhccc--CchhhHHHHHHH-----H
Q 036263 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR---QVFQRMHK--RTLVSWNSIIVG-----F 238 (305)
Q Consensus 169 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~---~~~~~~~~--~~~~~~~~li~~-----~ 238 (305)
+. -..|+++.|..+++.+...- +--...-..-+....+.|+.+.+. +++....+ .+..+.+.+.-- +
T Consensus 375 f~--e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FE--ESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HH--HhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 32 35679999999999998774 323444444566677888888888 44444432 233333333333 3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036263 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277 (305)
Q Consensus 239 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 277 (305)
.-.++.+.|..++.++... ++++...|..+++-+...+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 4468899999999999886 5667777888877665544
No 301
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.66 E-value=29 Score=31.02 Aligned_cols=156 Identities=12% Similarity=0.069 Sum_probs=82.9
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 036263 128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207 (305)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 207 (305)
...-+++..++.+.++.-+..+-.+|...| -+-..|..++..|... .-+.-..+|+++.+..+ .|+..-..|..-|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence 335566666666666666667777776643 3455666677766666 45556666666666542 2333334444444
Q ss_pred HhcCChHHHHHHHHhcccC------ch---hhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccC
Q 036263 208 SRFGCIEFARQVFQRMHKR------TL---VSWNSIIVGFAVNGFVGEALEYFNLMQKG-VFKTDEVSFTGALTACSHAG 277 (305)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g 277 (305)
-+ ++.+.+..+|.++..+ +. ..|.-++.- -..+.+....+..+.... |...-...+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 44 6666666666665421 10 133333321 133455555555554432 33333344444555566666
Q ss_pred cHHHHHHHHHHHH
Q 036263 278 LIEDGLQYFDIMK 290 (305)
Q Consensus 278 ~~~~a~~~~~~m~ 290 (305)
++++|++++..+.
T Consensus 220 N~~eai~Ilk~il 232 (711)
T COG1747 220 NWTEAIRILKHIL 232 (711)
T ss_pred CHHHHHHHHHHHh
Confidence 6666666666443
No 302
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.55 E-value=27 Score=32.40 Aligned_cols=218 Identities=14% Similarity=0.050 Sum_probs=95.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---cc
Q 036263 52 ISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---CD 128 (305)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~ 128 (305)
...+.-.|+++.|++.+-. ..+...|...+...+..+.-.+.|+... ..++..-+. ..
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~-----------------~~lls~~~~~~~~l 325 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS-----------------APLLSVDPGDPPPL 325 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc-----------------cceeeecCCCCCCc
Confidence 4566778999999998876 3345667777777776654332211111 001100000 12
Q ss_pred cHHHHHHHHHcC---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hcCcCC--------------hhHHHHHHHHHhh
Q 036263 129 FWTALLNGFVKR---DYFEEALEYFRVMQISGVEPDYLTIISVLNV-CANVRT--------------LGIGLWMHRYVPK 190 (305)
Q Consensus 129 ~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~--------------~~~a~~~~~~~~~ 190 (305)
-+..||..|.+. .+..+|.++|--+....-+.....+...+.- ....++ ...+.+-...+..
T Consensus 326 n~arLI~~Y~~~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~ 405 (613)
T PF04097_consen 326 NFARLIGQYTRSFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIK 405 (613)
T ss_dssp -HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT
T ss_pred CHHHHHHHHHHHHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccC
Confidence 245555555553 3455666666554432211111222211111 111111 1111111111222
Q ss_pred cCCCCChhHH---HHHHHHHHhcCChHHHHHHHHhcccCch--hhHHHHHHHHHhcCC------------hHHHHHHHHH
Q 036263 191 QDFKDNVRVC---NTLMDVYSRFGCIEFARQVFQRMHKRTL--VSWNSIIVGFAVNGF------------VGEALEYFNL 253 (305)
Q Consensus 191 ~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~g~------------~~~a~~~~~~ 253 (305)
.. .+..... .....-+...|++++|..+|+-..+.+. ...|.++........ ...|..+.+.
T Consensus 406 ~~-~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~ 484 (613)
T PF04097_consen 406 FD-DDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILER 484 (613)
T ss_dssp -S-SSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHH
Confidence 11 1222222 2333445678999999999998886433 445555544433322 2344445444
Q ss_pred HHHCC-----CCC-CHHHHHHHHHH-----HhccCcHHHHHHHHHHH
Q 036263 254 MQKGV-----FKT-DEVSFTGALTA-----CSHAGLIEDGLQYFDIM 289 (305)
Q Consensus 254 m~~~g-----~~p-~~~~~~~li~~-----~~~~g~~~~a~~~~~~m 289 (305)
....+ +.+ +..|+..|++. +...|+++.|++.++.+
T Consensus 485 y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 485 YKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 43322 212 34566666543 44689999998777744
No 303
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=84.54 E-value=4.6 Score=22.97 Aligned_cols=39 Identities=21% Similarity=0.125 Sum_probs=32.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHh
Q 036263 51 SISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG 89 (305)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 89 (305)
++....+.|-++++..++++|.+.|+.-+...|..+++.
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 344556789999999999999999999999988877764
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.36 E-value=14 Score=27.29 Aligned_cols=73 Identities=8% Similarity=0.095 Sum_probs=47.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263 132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV-LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208 (305)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (305)
.+++.-.+.++.+++..++..+.- +.|.......+ ...+...|++.+|..+++.+.+.. |.......|+..|.
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL 88 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHH
Confidence 344556677899999999998876 45654333222 223578899999999999987764 44333444444443
No 305
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=84.31 E-value=6.1 Score=27.14 Aligned_cols=31 Identities=13% Similarity=0.256 Sum_probs=25.5
Q ss_pred CccccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 036263 125 RGCDFWTALLNGFVKRDYFEEALEYFRVMQI 155 (305)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (305)
.+..-|..|+..|...|.+++|++++.++..
T Consensus 37 ~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 37 KEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3355688999999999999999999988766
No 306
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=84.24 E-value=5.4 Score=22.69 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=30.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036263 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272 (305)
Q Consensus 236 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 272 (305)
....+.|-.+++..++++|.+.|+..+...+..+++-
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3446778888999999999999998888888877653
No 307
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=84.22 E-value=36 Score=31.75 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=29.7
Q ss_pred hhHHHHH--HHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCcHH
Q 036263 229 VSWNSII--VGFAVNGFVGEALEYFNLMQKG-VFKTDEVSFTGALTACSHAGLIE 280 (305)
Q Consensus 229 ~~~~~li--~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~ 280 (305)
..|+-+| .--...|.++.|.+.--.+... .+-|....|+.+.-+-+....+-
T Consensus 1020 EAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFG 1074 (1189)
T KOG2041|consen 1020 EAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFG 1074 (1189)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhh
Confidence 3444444 4456678888887765544442 36677777776665544444433
No 308
>PRK11906 transcriptional regulator; Provisional
Probab=83.76 E-value=30 Score=30.48 Aligned_cols=158 Identities=9% Similarity=0.050 Sum_probs=100.6
Q ss_pred ccH--HHHHHHHHcCC-----ChHHHHHHHHHHH-HcCCCCC-HHHHHHHHHHh--------cC-cCChhHHHHHHHHHh
Q 036263 128 DFW--TALLNGFVKRD-----YFEEALEYFRVMQ-ISGVEPD-YLTIISVLNVC--------AN-VRTLGIGLWMHRYVP 189 (305)
Q Consensus 128 ~~~--~~li~~~~~~g-----~~~~a~~~~~~m~-~~g~~p~-~~t~~~ll~~~--------~~-~~~~~~a~~~~~~~~ 189 (305)
..| ..++.+..... ..+.|+.+|.+.. ...+.|+ ...|..+-.++ .. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 66666665532 3567888888876 2235665 33333322221 12 234456677777777
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--cCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHH
Q 036263 190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH--KRT-LVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEVS 265 (305)
Q Consensus 190 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~ 265 (305)
+.+ +.|......+..+..-.++++.|...|++.. .|| ..+|......+.-+|+.++|.+.+++..+.. .+.-...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 777 7788888888888888888999999999987 353 3556666666777899999999999966632 2222233
Q ss_pred HHHHHHHHhccCcHHHHHHHHH
Q 036263 266 FTGALTACSHAGLIEDGLQYFD 287 (305)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~~ 287 (305)
....+..|+.. ..+.++.++-
T Consensus 411 ~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 411 IKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHcCC-chhhhHHHHh
Confidence 44444466554 4556665543
No 309
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.52 E-value=29 Score=30.09 Aligned_cols=148 Identities=15% Similarity=-0.008 Sum_probs=91.4
Q ss_pred HHhcCChHHHHHHHHhcCc---cccHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHHHHHH---H----------H
Q 036263 108 YAKFGRMDLATVVFDVMRG---CDFWTALLNG--FVKRDYFEEALEYFRVMQISGVEPDYLTIIS---V----------L 169 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~---~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~---l----------l 169 (305)
+.-.|+.++|.++--.... ...+..++++ +-..++.+.+...|++-.. ..|+...-.. . -
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhh
Confidence 3445777777766555433 3334444443 3345667777777776554 3454332221 1 2
Q ss_pred HHhcCcCChhHHHHHHHHHhhc---CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchh---hHHHHHHHHHhcCC
Q 036263 170 NVCANVRTLGIGLWMHRYVPKQ---DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV---SWNSIIVGFAVNGF 243 (305)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~ 243 (305)
+-..+.|.+..|.+.+.+.+.. ...+++..|.....+..+.|+.++|..--++..+-|.. .|..-..++...++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 2246788888888888887764 34566777877778888889988888887777765543 22222334556677
Q ss_pred hHHHHHHHHHHHHC
Q 036263 244 VGEALEYFNLMQKG 257 (305)
Q Consensus 244 ~~~a~~~~~~m~~~ 257 (305)
|++|.+-|+...+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888877775543
No 310
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.32 E-value=18 Score=29.53 Aligned_cols=26 Identities=8% Similarity=-0.203 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 036263 48 WTSSISRHCRSGCILEAALEFTRMRL 73 (305)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~m~~ 73 (305)
...-.+-+.-..++..|++..++-.+
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglq 63 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQ 63 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444456677777777666544
No 311
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.28 E-value=23 Score=28.80 Aligned_cols=174 Identities=10% Similarity=0.038 Sum_probs=113.8
Q ss_pred cCChHHHHHHHHhcCc----cc-----cHHHHHHHHHcCCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHhcCcC
Q 036263 111 FGRMDLATVVFDVMRG----CD-----FWTALLNGFVKRDYFEEALEYFRVMQIS---GV--EPDYLTIISVLNVCANVR 176 (305)
Q Consensus 111 ~g~~~~a~~~~~~~~~----~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~~ 176 (305)
....++|+.-|+.+.+ .+ ..-.+|....+.|++++.+..+.+|... .+ .-+....|++++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3466777777777644 11 2456788899999999999999888531 12 235677888888888788
Q ss_pred ChhHHHHHHHHHhhc-CCCCCh----hHHHHHHHHHHhcCChHHHHHHHHhcccC---------------chhhHHHHHH
Q 036263 177 TLGIGLWMHRYVPKQ-DFKDNV----RVCNTLMDVYSRFGCIEFARQVFQRMHKR---------------TLVSWNSIIV 236 (305)
Q Consensus 177 ~~~~a~~~~~~~~~~-~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~li~ 236 (305)
+.+....+++.-.+. .-.-+. .|-+-|...|...|.+.+..++++++.+. -...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 777776666543321 001111 23355677777788888888888887621 2357777888
Q ss_pred HHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHH----HhccCcHHHHHH
Q 036263 237 GFAVNGFVGEALEYFNLMQKG-VFKTDEVSFTGALTA----CSHAGLIEDGLQ 284 (305)
Q Consensus 237 ~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~----~~~~g~~~~a~~ 284 (305)
.|....+-.+-..++++...- ...|.+.....+-.+ ..+.|++++|-.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 888888888888888875432 244666666554332 335677777654
No 312
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.15 E-value=7.4 Score=30.46 Aligned_cols=73 Identities=8% Similarity=0.036 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC--CCCChhHHHHHHH
Q 036263 131 TALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQD--FKDNVRVCNTLMD 205 (305)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~ 205 (305)
+.-++.+.+.+.+++++...++=.+. +| |..+-..+++.++-.|++++|..=++..-+.. ..+...+|..+|.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455555566666666555543332 33 34444455555666666666554444332221 1233444544444
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.68 E-value=16 Score=26.65 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=8.4
Q ss_pred HhcCChHHHHHHHHhcc
Q 036263 208 SRFGCIEFARQVFQRMH 224 (305)
Q Consensus 208 ~~~g~~~~a~~~~~~~~ 224 (305)
...|++++|.++|+++.
T Consensus 55 i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 55 IARGNYDEAARILRELL 71 (153)
T ss_pred HHcCCHHHHHHHHHhhh
Confidence 34445555555555544
No 314
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.47 E-value=12 Score=25.01 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 246 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
++.+-++.+....+.|++....+.+++|-+..++..|..+|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555555555444
No 315
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.85 E-value=6.4 Score=25.15 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=29.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHH
Q 036263 240 VNGFVGEALEYFNLMQKGVFKTDE--VSFTGALTACSHAGLIEDGLQYF 286 (305)
Q Consensus 240 ~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~ 286 (305)
...+.++|+..|....+.-..|.. .++..++.+++..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777776654332222 46677777788888777766543
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.73 E-value=15 Score=28.30 Aligned_cols=47 Identities=2% Similarity=-0.129 Sum_probs=27.2
Q ss_pred HHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCcHHHHH
Q 036263 237 GFAVNGFVGEALEYFNLMQKG---VFKTDEVSFTGALTACSHAGLIEDGL 283 (305)
Q Consensus 237 ~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~ 283 (305)
.|-...|.+++..++.+..+. +-.+|+..+..|...+.+.|+++.|.
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 333355666666666555432 23456666666666666666666654
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.43 E-value=19 Score=27.79 Aligned_cols=68 Identities=12% Similarity=-0.064 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc-------cCchhhHHHHHHHHHhcCChHHHH
Q 036263 180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH-------KRTLVSWNSIIVGFAVNGFVGEAL 248 (305)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~ 248 (305)
.|.+.|-.+...+.--++.....|...|. ..+.+++..++-+.. +.|+..+..|...|-+.|+++.|.
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34444444444443334444444444443 334455555544443 234455555555555555555543
No 318
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=81.30 E-value=21 Score=27.02 Aligned_cols=161 Identities=15% Similarity=0.040 Sum_probs=117.5
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHH-
Q 036263 128 DFWTALLNGFVKRDYFEEALEYFRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD- 205 (305)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~- 205 (305)
..+......+...+.+..+...+...... ........+......+...+....+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 45667778888889999998888877642 234456667777777788888999999999887765333 222333333
Q ss_pred HHHhcCChHHHHHHHHhcccCc------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc
Q 036263 206 VYSRFGCIEFARQVFQRMHKRT------LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGL 278 (305)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 278 (305)
.+...|+++.|...+++....+ ...+......+...++.+.+...+.+..... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 7889999999999999875421 2233333444677899999999999988853 22 36778888888888889
Q ss_pred HHHHHHHHHHHH
Q 036263 279 IEDGLQYFDIMK 290 (305)
Q Consensus 279 ~~~a~~~~~~m~ 290 (305)
++.+...+....
T Consensus 218 ~~~a~~~~~~~~ 229 (291)
T COG0457 218 YEEALEYYEKAL 229 (291)
T ss_pred HHHHHHHHHHHH
Confidence 999999988877
No 319
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.86 E-value=45 Score=30.55 Aligned_cols=148 Identities=10% Similarity=0.103 Sum_probs=88.5
Q ss_pred HHcCCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHhcCcC-----ChhHHHHHHHHHhhcCCCCChhHHHHHH
Q 036263 137 FVKRDYFEEALEYFRVMQI-------SGVEPDYLTIISVLNVCANVR-----TLGIGLWMHRYVPKQDFKDNVRVCNTLM 204 (305)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li 204 (305)
+....+.+.|+.+|+...+ .|.. ....-+-.+|.+.. +.+.|..++....+.| .|+....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 4466789999999988866 4422 23444444454432 5667899998888888 45555444444
Q ss_pred HHHHh-cCChHHHHHHHHhcccC-chhhHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036263 205 DVYSR-FGCIEFARQVFQRMHKR-TLVSWNSIIVGFA----VNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278 (305)
Q Consensus 205 ~~~~~-~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 278 (305)
..... ..+...|.++|....+. ....+-.+...|. ...+.+.|..++++..+.| .|...--...+..+.. ++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 33333 34578899999888743 3333322322222 3457888999999988887 3432222233344444 66
Q ss_pred HHHHHHHHHHHH
Q 036263 279 IEDGLQYFDIMK 290 (305)
Q Consensus 279 ~~~a~~~~~~m~ 290 (305)
++.+...+..+.
T Consensus 413 ~~~~~~~~~~~a 424 (552)
T KOG1550|consen 413 YDTALALYLYLA 424 (552)
T ss_pred ccHHHHHHHHHH
Confidence 666665555554
No 320
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.82 E-value=16 Score=24.68 Aligned_cols=86 Identities=10% Similarity=-0.002 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
.++|..+-+.+...+- ....+--+=+..+...|++++|..+.+.+.-||+..|-.+.. .+.|--+++...+-+|...
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4555555555554431 122222333556777888888888888887788888766644 3556666666667777776
Q ss_pred CCCCCHHHHH
Q 036263 258 VFKTDEVSFT 267 (305)
Q Consensus 258 g~~p~~~~~~ 267 (305)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 34444443
No 321
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.51 E-value=5.8 Score=22.12 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=16.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 036263 234 IIVGFAVNGFVGEALEYFNLMQKGV 258 (305)
Q Consensus 234 li~~~~~~g~~~~a~~~~~~m~~~g 258 (305)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566667777777777777666543
No 322
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=79.18 E-value=7.7 Score=33.41 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=92.9
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHhcCcCChhHHHHHHHHHh----hcC-CCCC
Q 036263 127 CDFWTALLNGFVKRDYFEEALEYFRVMQ----ISGVE-PDYLTIISVLNVCANVRTLGIGLWMHRYVP----KQD-FKDN 196 (305)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~~-~~~~ 196 (305)
...|..|...|.-.|+++.|+...+.-. +-|=+ .....+..+-+++.-.|+++.|.+.|+... +.| -...
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 3446677777777889999987665422 22222 234567888889999999999999887653 222 1344
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhccc---------CchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036263 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK---------RTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255 (305)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 255 (305)
..+..+|.+.|.-..++++|+.++++-.. -....+.+|..+|...|.-++|+.+.+.-.
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 66778888888888899999998876542 245678889999999999999988776543
No 323
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=78.81 E-value=5 Score=32.93 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036263 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270 (305)
Q Consensus 229 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 270 (305)
.-|+..|+..++.||+++|+.++++.++.|+.--..+|-.-+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 457788999999999999999999999998766556664443
No 324
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=78.52 E-value=37 Score=28.20 Aligned_cols=42 Identities=10% Similarity=0.127 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHh
Q 036263 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189 (305)
Q Consensus 148 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 189 (305)
++|+.|.+.++.|.-..|.-+.-.+...=.+.++..+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444555555555554444444444444555555555543
No 325
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.51 E-value=6 Score=22.08 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=14.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHc
Q 036263 133 LLNGFVKRDYFEEALEYFRVMQIS 156 (305)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~ 156 (305)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666543
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.41 E-value=6.4 Score=19.56 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=14.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHH
Q 036263 269 ALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 269 li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+..++.+.|++++|.+.|+.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 4455556667777777776666
No 327
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.36 E-value=65 Score=30.91 Aligned_cols=190 Identities=12% Similarity=0.020 Sum_probs=99.8
Q ss_pred HHhcCChHHHHHHHHhcCc-------------cccHHHHH-HHHHcCCChHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 036263 108 YAKFGRMDLATVVFDVMRG-------------CDFWTALL-NGFVKRDYFEEALEYFRVMQIS----GVEPDYLTIISVL 169 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~-------------~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~ll 169 (305)
.....++++|..+..++.. ...|+.|- ......|++++|+++-+.-... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3445778888877776632 11244442 2334467888888887765543 1223345566666
Q ss_pred HHhcCcCChhHHHHHHHHHhhcCCCCChhH---HHHH--HHHHHhcCC--hHHHHHHHHhccc-----C-----chhhHH
Q 036263 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRV---CNTL--MDVYSRFGC--IEFARQVFQRMHK-----R-----TLVSWN 232 (305)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--i~~~~~~g~--~~~a~~~~~~~~~-----~-----~~~~~~ 232 (305)
.+..-.|+.++|..+..+..+.--.-+... |..+ ...+...|. .++....|..... . -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 677778888888888777655422223332 2222 223445562 2333333333321 1 223444
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHHHHHhCCCCC
Q 036263 233 SIIVGFAVN-GFVGEALEYFNLMQKGVFKTDEVSF--TGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ 298 (305)
Q Consensus 233 ~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 298 (305)
.+..++.+. +.-.++..-+.--......|-...+ ..+.+.....|+.+.|...++++. .....++
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~-~l~~~~~ 652 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE-RLLLNGQ 652 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhcCCC
Confidence 555555441 1112222222222222222222222 256677778899999999999998 6655554
No 328
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.05 E-value=51 Score=29.44 Aligned_cols=79 Identities=9% Similarity=0.008 Sum_probs=55.7
Q ss_pred HHHhcccCchhhH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHHhCC
Q 036263 219 VFQRMHKRTLVSW-NSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS--HAGLIEDGLQYFDIMKKIYRV 295 (305)
Q Consensus 219 ~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~ 295 (305)
.+..+..++..++ +.+++-+...|-+++|..++..+... .+|+...|..+|+-=. .+-+..-++++++.+.+.+|-
T Consensus 450 a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~ 528 (568)
T KOG2396|consen 450 ALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGA 528 (568)
T ss_pred HHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCC
Confidence 3344444555443 45677777888999999999998885 4567788888776422 223478889999999988886
Q ss_pred CCC
Q 036263 296 SPQ 298 (305)
Q Consensus 296 ~p~ 298 (305)
.|+
T Consensus 529 d~~ 531 (568)
T KOG2396|consen 529 DSD 531 (568)
T ss_pred ChH
Confidence 554
No 329
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.98 E-value=24 Score=25.69 Aligned_cols=74 Identities=7% Similarity=0.126 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCC-hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036263 102 TALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDY-FEEALEYFRVMQISGVEPDYLTIISVL 169 (305)
Q Consensus 102 ~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~ll 169 (305)
+.++.-....+++.....+++.+.- ...|++++.+..+..- ---+..+|+.|++.+.+++..-|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4445445555666666655555421 3345555555544433 223445555555545555555555555
Q ss_pred HHhcCc
Q 036263 170 NVCANV 175 (305)
Q Consensus 170 ~~~~~~ 175 (305)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 554444
No 330
>PF13934 ELYS: Nuclear pore complex assembly
Probab=77.74 E-value=33 Score=27.18 Aligned_cols=106 Identities=14% Similarity=0.070 Sum_probs=47.4
Q ss_pred cccHHHHHHHHHcC--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHH
Q 036263 127 CDFWTALLNGFVKR--DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204 (305)
Q Consensus 127 ~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 204 (305)
...|...+.++... +++++|.+++-. -.+.|+-. .-++.++...|+.+.|..+++...-.. .+......++
T Consensus 76 p~~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~ 148 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDHGDFEEALELLSH---PSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYF 148 (226)
T ss_pred CHHHHHHHHHHHHhChHhHHHHHHHhCC---CCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHH
Confidence 34456666665443 344455444411 11222211 135555555666666666665532211 1112222222
Q ss_pred HHHHhcCChHHHHHHHHhcccCc-hhhHHHHHHHHHh
Q 036263 205 DVYSRFGCIEFARQVFQRMHKRT-LVSWNSIIVGFAV 240 (305)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~ 240 (305)
.. ..++.+.+|..+-+...++. ...+..++..+..
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 22 44566666666655555432 3344555555443
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.38 E-value=40 Score=27.87 Aligned_cols=157 Identities=10% Similarity=0.007 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHh-------h-------------------cCCCCC
Q 036263 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP-------K-------------------QDFKDN 196 (305)
Q Consensus 143 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-------~-------------------~~~~~~ 196 (305)
-.+|+++|.-+.++.-+ ..+-..++.++-...+...|...+.... . .+...|
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 45677777777654212 2333445555555555555544332211 0 123445
Q ss_pred hhHHHHHHHHHHhc-CChHHHHHHHHhccc--------C---c---------hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036263 197 VRVCNTLMDVYSRF-GCIEFARQVFQRMHK--------R---T---------LVSWNSIIVGFAVNGFVGEALEYFNLMQ 255 (305)
Q Consensus 197 ~~~~~~li~~~~~~-g~~~~a~~~~~~~~~--------~---~---------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 255 (305)
..-|-..+...-.. ..++++.++....+. + | ..+++.....|..+|.+.+|.++-++..
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 56666665554333 336777777776641 0 1 1244556678999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH----HHhCCCCCcccc
Q 036263 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK----KIYRVSPQIEHH 302 (305)
Q Consensus 256 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~y 302 (305)
... +.+...+-.++..+...|+--.+.+-++.+. +..|+.-|...+
T Consensus 307 tld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 307 TLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred hcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 853 3477888889999999999767766666554 356776665443
No 332
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.76 E-value=18 Score=23.64 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=15.0
Q ss_pred cCChHHHHHHHHhcccCchhhHHHHHHHHHhcCC
Q 036263 210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243 (305)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 243 (305)
.|+.+.|.+++..+. +....|...+.++...|.
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 344444444444444 444444444444444443
No 333
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=76.70 E-value=9 Score=23.19 Aligned_cols=25 Identities=12% Similarity=0.204 Sum_probs=11.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 266 FTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.-.+|.++...|++++|.++++.+.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344455555555555555554443
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.88 E-value=32 Score=26.04 Aligned_cols=115 Identities=10% Similarity=-0.002 Sum_probs=49.3
Q ss_pred hcCChHHHHHHHHhcCc--cccHHHHH-----HHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHH--HHHhcCcCChh
Q 036263 110 KFGRMDLATVVFDVMRG--CDFWTALL-----NGFVKRDYFEEALEYFRVMQISGVEPDYL-TIISV--LNVCANVRTLG 179 (305)
Q Consensus 110 ~~g~~~~a~~~~~~~~~--~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l--l~~~~~~~~~~ 179 (305)
..+..++|+.-|..+.+ .+.|-.|. ......|+-..|...|++.-...-.|-.. -..-| ...+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 34445555555555544 22232221 23344455555555555544332223211 11111 11234455555
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
.+....+-+-..+-+.-...-..|.-+-.+.|++.+|.+.|+.+.
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 555555444443323333333444444455555555555555554
No 335
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=74.64 E-value=57 Score=28.38 Aligned_cols=114 Identities=11% Similarity=-0.034 Sum_probs=81.3
Q ss_pred cCChHHHHHHHHhcCc-----------------cccHHHHHHHHHcCCChHHHHHHHHHHHHc---CCCCCHHHHHHHHH
Q 036263 111 FGRMDLATVVFDVMRG-----------------CDFWTALLNGFVKRDYFEEALEYFRVMQIS---GVEPDYLTIISVLN 170 (305)
Q Consensus 111 ~g~~~~a~~~~~~~~~-----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~ll~ 170 (305)
.++.+.+...|++... ...|..=..-..+.|++..|.+.+.+-... .++|++..|...-.
T Consensus 216 ~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 4677888888887754 112344445567889999999999987653 45666777888888
Q ss_pred HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225 (305)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (305)
+..+.|+.++|..--+...+.+ +.-...|..-..++...++|++|.+-|+...+
T Consensus 296 v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred hhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999998887776643 11133344445566667889999999888764
No 336
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.25 E-value=32 Score=28.11 Aligned_cols=89 Identities=9% Similarity=0.060 Sum_probs=58.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH---
Q 036263 132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS--- 208 (305)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--- 208 (305)
.=|.+++..++|.+++...-+-.+.--+........-|-.|.+.+.+..+.++-....+..-.-+..-|..+...|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 34788888888888877665544332233345566666678888888888888777665432223344666655554
Q ss_pred --hcCChHHHHHHH
Q 036263 209 --RFGCIEFARQVF 220 (305)
Q Consensus 209 --~~g~~~~a~~~~ 220 (305)
=.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 468888888886
No 337
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.98 E-value=31 Score=27.70 Aligned_cols=77 Identities=14% Similarity=0.047 Sum_probs=52.4
Q ss_pred HHHHHHHHhcccCch--hhHHHHHHHHHhcCChHHHHHHHHHHH----HCC-CCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036263 214 EFARQVFQRMHKRTL--VSWNSIIVGFAVNGFVGEALEYFNLMQ----KGV-FKTDEVSFTGALTACSHAGLIEDGLQYF 286 (305)
Q Consensus 214 ~~a~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~ 286 (305)
..|...|......-. ..--.+..-|...|++++|.++|+.+. ++| ..+...+...+..+..+.|+.+....+.
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344555544443222 223355677899999999999999874 345 4456677888888888999999888776
Q ss_pred HHHH
Q 036263 287 DIMK 290 (305)
Q Consensus 287 ~~m~ 290 (305)
=++.
T Consensus 242 leLl 245 (247)
T PF11817_consen 242 LELL 245 (247)
T ss_pred HHHh
Confidence 5553
No 338
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.71 E-value=78 Score=29.51 Aligned_cols=50 Identities=24% Similarity=0.150 Sum_probs=37.4
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS 95 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 95 (305)
+...| ++|-.|.|.|++++|.++..+..+ +.......|...+..+...++
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~ 160 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPD 160 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTS
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCC
Confidence 44567 678899999999999999965554 366677788888999887655
No 339
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=73.34 E-value=5.5 Score=28.37 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=26.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhh
Q 036263 54 RHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC 90 (305)
Q Consensus 54 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 90 (305)
.+...|.-..|..+|..|.++|-+||. |+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 445567777899999999999999984 55666543
No 340
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.24 E-value=68 Score=28.59 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=71.2
Q ss_pred CcCChhHHH-HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHH
Q 036263 174 NVRTLGIGL-WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALE 249 (305)
Q Consensus 174 ~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~ 249 (305)
..|+...|. +++..++...-.|+.....+. .+...|+++.+...+....+ ....+-.++++.....|+++.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 344444443 344444443334444333333 34677888888888777664 355677788888888999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 250 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.-..|....+. +........-.--..|-+|++...|+.+.
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 88888876654 33333322223334577888888888776
No 341
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.13 E-value=27 Score=23.92 Aligned_cols=79 Identities=9% Similarity=-0.046 Sum_probs=40.5
Q ss_pred ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
..++|..+.+.+...+- ....+--+-+..+.+.|++++|...=.....||...|-+|- -.+.|--+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 34566666666665542 33333344455566677777774444444456666665443 2355666666666666655
Q ss_pred CC
Q 036263 257 GV 258 (305)
Q Consensus 257 ~g 258 (305)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 342
>PRK11619 lytic murein transglycosylase; Provisional
Probab=72.89 E-value=84 Score=29.50 Aligned_cols=238 Identities=9% Similarity=-0.045 Sum_probs=141.8
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD 122 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 122 (305)
.+...-.....+....|+.++|.+....+-..|-. .......++..+.+.+..+....-.-+......|+...|..+..
T Consensus 127 ~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~ 205 (644)
T PRK11619 127 KPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAK 205 (644)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45555667788888899988888888777666532 35567778888877777666555556666777788888888777
Q ss_pred hcCcc--ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc--CcCChhHHHHHHHHHhhcC-CCCC-
Q 036263 123 VMRGC--DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA--NVRTLGIGLWMHRYVPKQD-FKDN- 196 (305)
Q Consensus 123 ~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~-~~~~- 196 (305)
.+... .....++..... ...+..++.. +.|+...-..++.++. ...+.+.|...+....... +.+.
T Consensus 206 ~l~~~~~~~a~a~~al~~~---p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~ 277 (644)
T PRK11619 206 QLPADYQTIASALIKLQND---PNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQ 277 (644)
T ss_pred hcChhHHHHHHHHHHHHHC---HHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHH
Confidence 77331 112223332222 2222222221 2233222222222222 3445678888888764433 2222
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhcccC--chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263 197 -VRVCNTLMDVYSRFGCIEFARQVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273 (305)
Q Consensus 197 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 273 (305)
..++..+.......+...+|...++....+ +.....--+....+.++++.+...+..|-...-. ...-.-.+.++.
T Consensus 278 ~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~ 356 (644)
T PRK11619 278 RQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLL 356 (644)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHH
Confidence 223444444444443356777777765532 4455555566667899999999998888553322 233333556777
Q ss_pred hccCcHHHHHHHHHHHH
Q 036263 274 SHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 274 ~~~g~~~~a~~~~~~m~ 290 (305)
...|+.++|..+|+.+.
T Consensus 357 ~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 357 LEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHcCCHHHHHHHHHHHh
Confidence 77899999999998875
No 343
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=72.85 E-value=8.7 Score=31.59 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=37.1
Q ss_pred Cch-HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 036263 43 DTT-VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLL 87 (305)
Q Consensus 43 ~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 87 (305)
||. .-||.-|+...+.|++++|+.++++.++.|+.--..+|...+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 444 457899999999999999999999999999876666665444
No 344
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.49 E-value=16 Score=29.98 Aligned_cols=70 Identities=14% Similarity=0.074 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 036263 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQK-----GVFKTDEVSFT 267 (305)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~ 267 (305)
.+.+.....|..+|.+.+|.++-++...- +...|-.++..++..||--.|.+-++++.+ .|+..|...++
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 44566677888999999999998888742 556778888899999998888777777643 46666665544
No 345
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=72.12 E-value=1.5e+02 Score=32.15 Aligned_cols=107 Identities=7% Similarity=-0.039 Sum_probs=46.3
Q ss_pred HHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc
Q 036263 104 LLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175 (305)
Q Consensus 104 ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 175 (305)
+..+-.+++.+.+|...++.-+. ..-|..+...|+..+++|....+...-.. .|+ +..-|.-....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHhh
Confidence 33344455556666666655211 11133333355555555555544442110 111 12222233445
Q ss_pred CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 036263 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 217 (305)
|+++.|...|+.+.+.+ ++...+++-+++.-...|.++.+.
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i 1503 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEI 1503 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHH
Confidence 55555555555555543 333444444444433344443333
No 346
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.07 E-value=32 Score=24.33 Aligned_cols=60 Identities=10% Similarity=0.086 Sum_probs=40.6
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFDI 288 (305)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (305)
|..-|-.+--.|+..-+ .+.++|+.|...|+.- -+..|......+...|++++|.++|+.
T Consensus 64 nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 64 NDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp T-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34444444444555433 8888999998887544 456677777788888999999998874
No 347
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=71.71 E-value=30 Score=25.20 Aligned_cols=64 Identities=6% Similarity=0.008 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 036263 148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212 (305)
Q Consensus 148 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 212 (305)
++.+.+++.|++++. --..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 345566777776654 2345566666666668888888888888766666665555666666664
No 348
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=71.59 E-value=16 Score=22.14 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 231 WNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 231 ~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
.-.+|.+|...|++++|.++.+++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33456666667777776666666544
No 349
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=71.54 E-value=48 Score=26.16 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=18.1
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 036263 128 DFWTALLNGFVKRDYFEEALEYFRVMQI 155 (305)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (305)
.+||-|.--+...|+++.|.+.|+...+
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 4566666666666777777776666655
No 350
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.29 E-value=63 Score=28.12 Aligned_cols=25 Identities=20% Similarity=0.049 Sum_probs=13.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 036263 52 ISRHCRSGCILEAALEFTRMRLYGTNPSH 80 (305)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 80 (305)
+...++.|+.+-+..+ .+.|..|+.
T Consensus 6 L~~A~~~g~~~iv~~L----l~~g~~~n~ 30 (413)
T PHA02875 6 LCDAILFGELDIARRL----LDIGINPNF 30 (413)
T ss_pred HHHHHHhCCHHHHHHH----HHCCCCCCc
Confidence 3344556666554444 445666653
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.19 E-value=38 Score=30.08 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=72.3
Q ss_pred HHHHHhcCChhHHH-HHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc----
Q 036263 52 ISRHCRSGCILEAA-LEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---- 126 (305)
Q Consensus 52 i~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---- 126 (305)
|..-...|++-.|- ++++-++...-.|+....-+.| +...|+++.+.+.+.....
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--------------------~~~lg~ye~~~~~~s~~~~~~~s 355 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--------------------FSHLGYYEQAYQDISDVEKIIGT 355 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--------------------HHHhhhHHHHHHHhhchhhhhcC
Confidence 44444566665554 3555555544445544333322 4567888888888776654
Q ss_pred -cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc
Q 036263 127 -CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191 (305)
Q Consensus 127 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 191 (305)
..+-.++++...+.|++++|..+-..|....++ +....+......-..|-++++.-.|+++...
T Consensus 356 ~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 356 TDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred CchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 445777888888889999999888888765544 2222222222233445667777777776543
No 352
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.75 E-value=51 Score=31.67 Aligned_cols=132 Identities=11% Similarity=0.102 Sum_probs=91.9
Q ss_pred HHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHH
Q 036263 106 DMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185 (305)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 185 (305)
..+..+|+++.|++.-..+.+..+|..|.....+.|+.+-|+-.|+..+. |..|--.|.-.|+.++-.++.
T Consensus 651 ~LaLe~gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~ 721 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMM 721 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHH
Confidence 34567899999999999998899999999999999999999888877653 445555667778888777776
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 186 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
+....++ |.. .....-.-.|+.++-.++++..-.-+.. | .....+|.-++|.++.++..++
T Consensus 722 ~iae~r~---D~~---~~~qnalYl~dv~ervkIl~n~g~~~la-y----lta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 722 KIAEIRN---DAT---GQFQNALYLGDVKERVKILENGGQLPLA-Y----LTAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHhhh---hhH---HHHHHHHHhccHHHHHHHHHhcCcccHH-H----HHHhhcCcHHHHHHHHHhhccc
Confidence 6654443 221 1111223457888888888777644322 1 1224577788888888887664
No 353
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=70.52 E-value=27 Score=24.77 Aligned_cols=30 Identities=3% Similarity=-0.034 Sum_probs=14.3
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036263 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255 (305)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 255 (305)
|+......-+++|.+-+|+..|..+|+-.+
T Consensus 82 P~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 82 PSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444455555555555555554443
No 354
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=70.00 E-value=43 Score=28.61 Aligned_cols=124 Identities=15% Similarity=0.077 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHH----cCCCCCHHHH
Q 036263 101 STALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQI----SGVEPDYLTI 165 (305)
Q Consensus 101 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~t~ 165 (305)
.-.+..+....+.++.+++.|+...+ ..+|-.|-+.|....++++|.-+.....+ .|+.-=..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 34456667777788888888876633 56788999999999999998776655432 2322112223
Q ss_pred H-----HHHHHhcCcCChhHHHHHHHHHhh----cCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 166 I-----SVLNVCANVRTLGIGLWMHRYVPK----QDFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 166 ~-----~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
. .+.-++...|....|.+.-++..+ .|-.+ .......+.+.|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3 233456677777777777766544 33222 23445667888899999999888877654
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.81 E-value=39 Score=26.69 Aligned_cols=73 Identities=12% Similarity=0.019 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc------CchhhHHHHHHH
Q 036263 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK------RTLVSWNSIIVG 237 (305)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~ 237 (305)
|.+..++.+.+.++.+++....+.-++.+ +.+...-..+++.||-.|++++|..-++-... +-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45566778889999999999999888876 66777888899999999999999877665542 244677777765
No 356
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=68.81 E-value=11 Score=17.69 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=10.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 036263 232 NSIIVGFAVNGFVGEALEYFNLM 254 (305)
Q Consensus 232 ~~li~~~~~~g~~~~a~~~~~~m 254 (305)
..+...+...|+++.|...++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344444444444444444443
No 357
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=67.02 E-value=6.2 Score=28.13 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=22.8
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036263 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV 171 (305)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (305)
..+.|.-..|..+|+.|.+.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34445666788888888888888875 5555544
No 358
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.34 E-value=74 Score=26.29 Aligned_cols=137 Identities=15% Similarity=0.076 Sum_probs=74.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc----
Q 036263 51 SISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---- 126 (305)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---- 126 (305)
+.....+.+++++|+..|.+....|+..|..+.+.-= .+...+...|...|+....-+.....++
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE-----------~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ 77 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQE-----------ATVLELFKLYVSKGDYCSLGDTITSSREAMED 77 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHH-----------HHHHHHHHHHHhcCCcchHHHHHHhhHHHHHH
Confidence 4556778899999999999999999988877665321 2233445556666655443333322211
Q ss_pred ------cccHHHHHHHHHcC-CChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHhcCcCChhHHHHHHHH----Hhh
Q 036263 127 ------CDFWTALLNGFVKR-DYFEEALEYFRVMQISGVEP-----DYLTIISVLNVCANVRTLGIGLWMHRY----VPK 190 (305)
Q Consensus 127 ------~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p-----~~~t~~~ll~~~~~~~~~~~a~~~~~~----~~~ 190 (305)
.....+|+..+... ..++....+.....+...+- ....=..++..+.+.|++.+|...... +.+
T Consensus 78 ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk 157 (421)
T COG5159 78 FTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK 157 (421)
T ss_pred hcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 22234444444332 23444444444333221111 111223567777888888887765543 344
Q ss_pred cCCCCChh
Q 036263 191 QDFKDNVR 198 (305)
Q Consensus 191 ~~~~~~~~ 198 (305)
.+-+++..
T Consensus 158 ~DDK~~Li 165 (421)
T COG5159 158 YDDKINLI 165 (421)
T ss_pred hcCcccee
Confidence 44455443
No 359
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.78 E-value=40 Score=25.81 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=16.6
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
.|+..+|..++.++...|+.++|.+..+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555554444
No 360
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=65.39 E-value=1.6e+02 Score=29.66 Aligned_cols=149 Identities=11% Similarity=0.027 Sum_probs=85.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc-----CCCCC--HHHHHHHHHHhcCcC--ChhHHHHHHHHHh--hcC---CCCChhH
Q 036263 134 LNGFVKRDYFEEALEYFRVMQIS-----GVEPD--YLTIISVLNVCANVR--TLGIGLWMHRYVP--KQD---FKDNVRV 199 (305)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~-----g~~p~--~~t~~~ll~~~~~~~--~~~~a~~~~~~~~--~~~---~~~~~~~ 199 (305)
+-+-....++.+-+-+++++++. .+..| ..-|...+..+...| -++++..+.++=. ..+ ..|+...
T Consensus 858 ~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~ 937 (1265)
T KOG1920|consen 858 LVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEK 937 (1265)
T ss_pred HHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHH
Confidence 34445566777777777777631 12222 122444444444444 4555555443210 000 2455555
Q ss_pred HHHH----HHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 036263 200 CNTL----MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV--SFTGALTAC 273 (305)
Q Consensus 200 ~~~l----i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~ 273 (305)
+..+ .+.+.+.+.+++|.-.|+..-+. .-.+.+|..+|+|.+|+.+..++... -|.. +-..|+.-+
T Consensus 938 ~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 938 QKVIYEAYADHLREELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 4444 44455667788887777766532 23467888888888888888776542 1222 224667777
Q ss_pred hccCcHHHHHHHHHHHH
Q 036263 274 SHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 274 ~~~g~~~~a~~~~~~m~ 290 (305)
...++.-+|-++..+..
T Consensus 1010 ~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHcccchhHHHHHHHHh
Confidence 88888888888777554
No 361
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.84 E-value=38 Score=25.90 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=15.4
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
|+...|..++.++...|+.++|.++.+++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444445555555555555555554444444
No 362
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.64 E-value=76 Score=25.80 Aligned_cols=159 Identities=13% Similarity=0.055 Sum_probs=79.9
Q ss_pred hcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHhcCcCChh-HHHHH
Q 036263 110 KFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYF----RVMQISGVEPDYLTIISVLNVCANVRTLG-IGLWM 184 (305)
Q Consensus 110 ~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~ 184 (305)
+.+++++|.+++.. =...+.+.|+...|-++- +-..+.+.++|......++..+...+.-+ +-.++
T Consensus 2 ~~kky~eAidLL~~---------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~f 72 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS---------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKF 72 (260)
T ss_dssp HTT-HHHHHHHHHH---------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHH
T ss_pred ccccHHHHHHHHHH---------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHH
Confidence 45677777776544 233455566655554444 33344566777666555555544332211 12222
Q ss_pred HHHHh---hcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036263 185 HRYVP---KQD--FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259 (305)
Q Consensus 185 ~~~~~---~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 259 (305)
.+.+. +.+ -.-++.....+...|.+.|++.+|+..|-.-.+++...+..++.-....|...++
T Consensus 73 i~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~------------ 140 (260)
T PF04190_consen 73 IKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA------------ 140 (260)
T ss_dssp HHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H------------
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch------------
Confidence 22222 222 1236778888999999999999999887766655555443333333333332222
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 036263 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292 (305)
Q Consensus 260 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (305)
|...-..+ --|.-.++...|...++...+.
T Consensus 141 --dlfi~RaV-L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 --DLFIARAV-LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp --HHHHHHHH-HHHHHTTBHHHHHHHHHHHHHH
T ss_pred --hHHHHHHH-HHHHHhcCHHHHHHHHHHHHHH
Confidence 22222233 3344557788888877777633
No 363
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.18 E-value=61 Score=25.26 Aligned_cols=92 Identities=8% Similarity=-0.085 Sum_probs=56.8
Q ss_pred HHhcCcCChhHHHHHHHHHhhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhcccCchh---hHHHHHHHHHhc
Q 036263 170 NVCANVRTLGIGLWMHRYVPKQDFKDN-----VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV---SWNSIIVGFAVN 241 (305)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~ 241 (305)
+-+...|++++|..-|...+..- ++. ...|..=.-++.+.+.++.|..--.+..+-+.. ....-..+|-+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34678888888888888877653 222 233444445666777777777665555543321 122223456777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH
Q 036263 242 GFVGEALEYFNLMQKGVFKTDEV 264 (305)
Q Consensus 242 g~~~~a~~~~~~m~~~g~~p~~~ 264 (305)
..++.|++=|+.+.+. .|...
T Consensus 182 ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHHh--CcchH
Confidence 7888888888888774 45544
No 364
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.83 E-value=1.5e+02 Score=28.92 Aligned_cols=127 Identities=8% Similarity=0.004 Sum_probs=63.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS---HITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD 122 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 122 (305)
.-|..|+..|...|+.++|++++.+..+..-.-| ...+--++..+.+.+.++....-....... ..+.+.+.++|-
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl-~~~p~~gi~Ift 583 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVL-NKNPEAGIQIFT 583 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhh-ccCchhheeeee
Confidence 4588999999999999999999999876320001 111212333332222222111111111000 122233333332
Q ss_pred hcCc--ccc-HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 036263 123 VMRG--CDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173 (305)
Q Consensus 123 ~~~~--~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (305)
.-.. ..+ =...+-.|......+.+..+++.+....-.++..-.+.++.-|+
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred ccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 2000 011 11123345556667777788887776655556666666666554
No 365
>PRK13342 recombination factor protein RarA; Reviewed
Probab=63.71 E-value=1e+02 Score=27.02 Aligned_cols=34 Identities=15% Similarity=-0.028 Sum_probs=20.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036263 241 NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274 (305)
Q Consensus 241 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 274 (305)
.++.+.|..++.+|.+.|..|....-..++.++.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4677777777777777776665444444444433
No 366
>PRK14700 recombination factor protein RarA; Provisional
Probab=63.26 E-value=82 Score=26.18 Aligned_cols=83 Identities=14% Similarity=0.094 Sum_probs=57.2
Q ss_pred HHHHHHHHHcC---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC-----hhHHHHHHHHHhhcCCCCChhHHH
Q 036263 130 WTALLNGFVKR---DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT-----LGIGLWMHRYVPKQDFKDNVRVCN 201 (305)
Q Consensus 130 ~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~ 201 (305)
+-.+|+++.++ .+.+.|+-.+.+|.+.|-.|....-..++.+.-..|. ...|...++....-|.+-......
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La 205 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLA 205 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 44467777664 6799999999999999999988888888888877774 345666777777777544333333
Q ss_pred HHHHHHHhcCC
Q 036263 202 TLMDVYSRFGC 212 (305)
Q Consensus 202 ~li~~~~~~g~ 212 (305)
..+-.++.+-+
T Consensus 206 ~aviyLA~aPK 216 (300)
T PRK14700 206 QAAIYLAVAPK 216 (300)
T ss_pred HHHHHHHcCCC
Confidence 33333343333
No 367
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=62.46 E-value=67 Score=24.45 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=14.8
Q ss_pred CcCChhHHHHHHHHHhhc-----CCCCC-hhHHHHHHHHHHh
Q 036263 174 NVRTLGIGLWMHRYVPKQ-----DFKDN-VRVCNTLMDVYSR 209 (305)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~ 209 (305)
...+..++..++++.+.. .+.|+ ..++..+..+|..
T Consensus 40 qfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 40 QFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred hccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 333444455555544321 23343 2344445554443
No 368
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=62.45 E-value=96 Score=26.23 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccC-ch----hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 201 NTLMDVYSRFGCIEFARQVFQRMHKR-TL----VSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~-~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
..+.-+..+.|+..+|.+.|+++.+. .. .....+|.++....-+..+..++-+.-+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444556778888888888877642 11 2345567777766666666666555443
No 369
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=62.35 E-value=1e+02 Score=26.63 Aligned_cols=89 Identities=12% Similarity=0.071 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHH------------HHHHHhcCChHHHHHHHHHHHHCCC-CCCH--
Q 036263 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI------------IVGFAVNGFVGEALEYFNLMQKGVF-KTDE-- 263 (305)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~-~p~~-- 263 (305)
.-..|..-+-..|+.++|..++.+.. +.||.++ ++-|...+||-.|.-+-++....-+ .||.
T Consensus 133 lTk~L~~ike~~Gdi~~Aa~il~el~---VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~ 209 (439)
T KOG1498|consen 133 LTKMLAKIKEEQGDIAEAADILCELQ---VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQE 209 (439)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc---hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHH
Confidence 34556777888999999999988887 3344333 5567788888888877777655432 3333
Q ss_pred ---HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 264 ---VSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 264 ---~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.-|+.+++.....+.+=.+-..|+.+.
T Consensus 210 lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy 239 (439)
T KOG1498|consen 210 LKLKYYELMIRLGLHDRAYLNVCRSYRAIY 239 (439)
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHh
Confidence 347788888878888877777777766
No 370
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=62.09 E-value=25 Score=24.20 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=8.4
Q ss_pred HHHHhcCChHHHHHHHHhcc
Q 036263 205 DVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~ 224 (305)
..+...+..-.|.++++.+.
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~ 27 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLR 27 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHH
Confidence 33333333344444444443
No 371
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=61.97 E-value=98 Score=26.21 Aligned_cols=21 Identities=5% Similarity=-0.195 Sum_probs=10.2
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 036263 236 VGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 236 ~~~~~~g~~~~a~~~~~~m~~ 256 (305)
..+...||..++.+++++.++
T Consensus 123 r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 123 RLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 334444555555555554444
No 372
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=61.51 E-value=19 Score=30.37 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=22.0
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHH
Q 036263 136 GFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLW 183 (305)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~ 183 (305)
.|.+.|++++|.+.|..-.. +.| +..++..-..+|.+..++..|+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 34455555555555544332 233 44445444555555555544443
No 373
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.42 E-value=74 Score=24.60 Aligned_cols=53 Identities=9% Similarity=-0.049 Sum_probs=24.5
Q ss_pred HHHHhcCChHHHHHHHHhcccCchhh--HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 205 DVYSRFGCIEFARQVFQRMHKRTLVS--WNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
+.....|.+|+|...++....++-.. ...-.+.+...|+-++|..-|+.....
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33444555555555555554442211 222234455555555555555555444
No 374
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.42 E-value=76 Score=24.76 Aligned_cols=92 Identities=11% Similarity=0.056 Sum_probs=57.2
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263 134 LNGFVKRDYFEEALEYFRVMQISGVEPD-----YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208 (305)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (305)
..-+.+.|++++|..-|.+..+.- ++. +..|..-..++.+.+.++.|..--...++.+ +......-.=..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 345667888888888887776642 222 2234444456677778887777766666654 222222223345677
Q ss_pred hcCChHHHHHHHHhcccCc
Q 036263 209 RFGCIEFARQVFQRMHKRT 227 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~ 227 (305)
+..++++|+.=|+.+.+.+
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 7788888888888877543
No 375
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=61.40 E-value=49 Score=27.38 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=64.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHH
Q 036263 103 ALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182 (305)
Q Consensus 103 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 182 (305)
.++....+.+++....+.++.+.....-...+..+...|++..|++++.+..+. .. +...|+++=.. ..++++..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L---~~~L~e~~ 177 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHL---SSQLQETL 177 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHH---hHHHHHHH
Confidence 344555666666667777777666666677788888899999999998877653 10 11111111111 11222222
Q ss_pred HHHHHHhhcC-----CCCChhHHHHHHHHHHhcCChHHHH
Q 036263 183 WMHRYVPKQD-----FKDNVRVCNTLMDVYSRFGCIEFAR 217 (305)
Q Consensus 183 ~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~ 217 (305)
...+.+.+.. ..-|+..|..++.+|.-.|+.+.+.
T Consensus 178 ~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 178 ELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 2222222211 1457888999999998888766544
No 376
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.60 E-value=58 Score=23.15 Aligned_cols=64 Identities=8% Similarity=-0.036 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHhcCcCChh--HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 161 DYLTIISVLNVCANVRTLG--IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 161 ~~~t~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
+..-|+.--.-|......| +..+-+..+...++.|++.+...-++++.+.+++..|.++|+-++
T Consensus 46 t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 46 TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444444444433332 456667777788899999999999999999999999999999888
No 377
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.47 E-value=45 Score=21.85 Aligned_cols=66 Identities=9% Similarity=-0.055 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 036263 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217 (305)
Q Consensus 146 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 217 (305)
+.++++.+.++|+ .+......+-.+-...|+.+.|.+++..+. +| +..|..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 3456666666663 333344444444456688888888888887 55 334678888888777655544
No 378
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=60.17 E-value=32 Score=20.04 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=21.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036263 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269 (305)
Q Consensus 234 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 269 (305)
+.-++.+.|++++|.+..+.+.+ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 44567778888888888888777 56766554444
No 379
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=59.79 E-value=72 Score=29.73 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChH------HHHHHHHHHHHcCCCCCHHHHHH
Q 036263 102 TALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFE------EALEYFRVMQISGVEPDYLTIIS 167 (305)
Q Consensus 102 ~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~p~~~t~~~ 167 (305)
.+|+.+|...|++-.+.++++.+.. ...||..|+...+.|.++ .|.+++++ ..+.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHH
Confidence 3678889999999999999988854 456888999999998754 23333332 336678889988
Q ss_pred HHHHhcCcCChhHHHHHHHHH
Q 036263 168 VLNVCANVRTLGIGLWMHRYV 188 (305)
Q Consensus 168 ll~~~~~~~~~~~a~~~~~~~ 188 (305)
++.+....-+.....-++.++
T Consensus 109 l~~~sln~t~~~l~~pvl~~~ 129 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHEL 129 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHH
Confidence 888766544444333343333
No 380
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.73 E-value=66 Score=24.58 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHhCCCCC--CHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc
Q 036263 61 ILEAALEFTRMRLYGTNP--SHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG 126 (305)
Q Consensus 61 ~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 126 (305)
.+.|+.+++.+.+.--.| -......++. -..+-.|.+.|.+++|.+++++.-+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik-------------~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIK-------------EQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-------------HHHHHHHHhcCchHHHHHHHHHHhc
Confidence 456777777776642222 1122222222 3456678888999999998888643
No 381
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=59.65 E-value=38 Score=20.77 Aligned_cols=56 Identities=9% Similarity=0.021 Sum_probs=41.3
Q ss_pred ccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 036263 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE 280 (305)
Q Consensus 224 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 280 (305)
..+....++.++..++...-.+.++..+.+....|. .+..+|..-++.+++..-+.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQF~~ 59 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQFLK 59 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888999999999988885 46777777777777654443
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.22 E-value=26 Score=22.45 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=18.7
Q ss_pred CChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcCcCChhHHH
Q 036263 141 DYFEEALEYFRVMQISGVEPD--YLTIISVLNVCANVRTLGIGL 182 (305)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~ 182 (305)
.+.++|+..|+...+.-..|. -.++..++.+++..|+++++.
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554443322221 224445555555555554443
No 383
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=59.15 E-value=57 Score=24.49 Aligned_cols=61 Identities=8% Similarity=0.052 Sum_probs=36.9
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC----chhhHHHHHHHHHhcCChHH
Q 036263 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR----TLVSWNSIIVGFAVNGFVGE 246 (305)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~ 246 (305)
-+.+.+.|+..+..-. .++..+...++.-.|.++++.+.+. +..|.-..+..+...|-+.+
T Consensus 14 ~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 14 EKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3445666776655433 4455555556666788888888742 44555555677777775543
No 384
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.96 E-value=56 Score=22.41 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 230 SWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 230 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
-|..++.-|...|..++|.+++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588899999999999999999998877
No 385
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.54 E-value=55 Score=22.21 Aligned_cols=52 Identities=10% Similarity=0.047 Sum_probs=28.4
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263 135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192 (305)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 192 (305)
+.+...|++++|..+.+.+ ..||...|-++-. .+.|..+....-+..|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3455566666666665554 2566655554433 35555555555555555555
No 386
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=58.22 E-value=23 Score=24.62 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=31.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036263 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277 (305)
Q Consensus 233 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 277 (305)
.++..+...+..-.|.++++.+.+.|...+..|.---+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 456666777778888888888888887777776666667666655
No 387
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=58.14 E-value=85 Score=24.25 Aligned_cols=56 Identities=9% Similarity=0.027 Sum_probs=44.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC--------------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263 233 SIIVGFAVNGFVGEALEYFNLMQKG--------------VFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288 (305)
Q Consensus 233 ~li~~~~~~g~~~~a~~~~~~m~~~--------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (305)
+++-.|-+..+|.++.++++.|.+. +..+.-...+.....|.++|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 4566678888999999999988653 2344556788888999999999999999883
No 388
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.10 E-value=70 Score=23.28 Aligned_cols=40 Identities=3% Similarity=0.057 Sum_probs=20.0
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
+.+.+.+.|++++.. -..+++.+.+.++.-.|.++++++.
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~ 47 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELR 47 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 344445555544433 2344455555545455666666555
No 389
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=57.59 E-value=1.5e+02 Score=26.95 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcCcCChhHHHHHHHHHhhc
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPD--YLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 191 (305)
...++.-|.+.+++++|..++..|.=.. .+. -...+.+.+.+.+..--++.+..++.+...
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~-~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNT-MGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccc-cHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 3457777888888888888887774321 111 223444555555554444444444444433
No 390
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.30 E-value=1.1e+02 Score=25.33 Aligned_cols=132 Identities=17% Similarity=0.115 Sum_probs=72.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHhcCcCChhHHHHHHHHH----hhcCCCCChhHHHH
Q 036263 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYL-------TIISVLNVCANVRTLGIGLWMHRYV----PKQDFKDNVRVCNT 202 (305)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ 202 (305)
.+...+.+++++|...+.+....|+.-|.. +...+...|...|+.....+..... ....-+-...+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 344566778888888888888777766544 4455666777777766544443332 22221223445555
Q ss_pred HHHHHHhcC-ChHHHHHHHHhccc---C------chhhHHHHHHHHHhcCChHHHHHHHH----HHHHCCCCCCHHH
Q 036263 203 LMDVYSRFG-CIEFARQVFQRMHK---R------TLVSWNSIIVGFAVNGFVGEALEYFN----LMQKGVFKTDEVS 265 (305)
Q Consensus 203 li~~~~~~g-~~~~a~~~~~~~~~---~------~~~~~~~li~~~~~~g~~~~a~~~~~----~m~~~g~~p~~~~ 265 (305)
++..+-... .++....+.....+ + -...=.-+|..+.+.|++.+|+.+.. ++++..-+|+..+
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 555554333 34554444444331 1 11122346777888888888876644 3444444454433
No 391
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=56.47 E-value=19 Score=22.04 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=37.2
Q ss_pred CCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHh
Q 036263 40 STIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG 89 (305)
Q Consensus 40 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 89 (305)
...|+...++.++...++..-.++++..+++....|. .+..+|.--++.
T Consensus 3 ~v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~ 51 (65)
T PF09454_consen 3 IVVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRS 51 (65)
T ss_dssp TEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 3457788899999999999999999999999999886 345555444443
No 392
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=56.44 E-value=93 Score=26.48 Aligned_cols=88 Identities=7% Similarity=-0.110 Sum_probs=56.1
Q ss_pred HHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcC-------
Q 036263 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG------- 242 (305)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g------- 242 (305)
+-|.+.|.+++|...|....... +.+.+++..=..+|.+..++..|+.--.....-| ...+.+|.+.+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd----~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD----KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh----HHHHHHHHHHHHHHHHHh
Confidence 34778999999999998877653 4488888888888999888877765444433221 22345555544
Q ss_pred ChHHHHHHHHHHHHCCCCCCHH
Q 036263 243 FVGEALEYFNLMQKGVFKTDEV 264 (305)
Q Consensus 243 ~~~~a~~~~~~m~~~g~~p~~~ 264 (305)
+..+|.+=++...+ +.|+..
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~~ 199 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKNI 199 (536)
T ss_pred hHHHHHHhHHHHHh--hCcccH
Confidence 44445444444444 556643
No 393
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=56.35 E-value=53 Score=21.34 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=16.0
Q ss_pred ChHHHHHHHHhcccCchhhHHHHHHHHHhcCC
Q 036263 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243 (305)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 243 (305)
+.++|.++++.++.+...+|.....++...|.
T Consensus 45 r~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 45 RRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 34455555555555555555555555544443
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=55.81 E-value=61 Score=28.26 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=31.2
Q ss_pred HHHHHhcCcCChhHHHHHHHHHhh--cC----C-CCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 167 SVLNVCANVRTLGIGLWMHRYVPK--QD----F-KDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 167 ~ll~~~~~~~~~~~a~~~~~~~~~--~~----~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
.|++..+-.|++..|.++++.+.- .+ + .....+|-.+.-+|.-.+++.+|.+.|....
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666654421 11 1 1123445555556666666666666666554
No 395
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=55.49 E-value=37 Score=23.18 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=13.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHH
Q 036263 132 ALLNGFVKRDYFEEALEYFRVMQ 154 (305)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~ 154 (305)
.++..|...|+.++|...+.++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 34555666677777777666653
No 396
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=54.66 E-value=84 Score=29.34 Aligned_cols=89 Identities=10% Similarity=0.046 Sum_probs=55.0
Q ss_pred HHHHHhcCcCChhHHHHHHHHHhhc--CCCCChhHHHHHHHHHHhcCChH------HHHHHHHhcc-cCchhhHHHHHHH
Q 036263 167 SVLNVCANVRTLGIGLWMHRYVPKQ--DFKDNVRVCNTLMDVYSRFGCIE------FARQVFQRMH-KRTLVSWNSIIVG 237 (305)
Q Consensus 167 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~~~-~~~~~~~~~li~~ 237 (305)
+++.+|...|++-.+.++++.+... |-+.-...||..|+...+.|.++ .|.+.+++.. .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 7888888888888888888887654 22333566777788888887653 3444444433 3466777777776
Q ss_pred HHhcCChHHHHHHHHHHH
Q 036263 238 FAVNGFVGEALEYFNLMQ 255 (305)
Q Consensus 238 ~~~~g~~~~a~~~~~~m~ 255 (305)
-..--+-.-..-++.+..
T Consensus 113 sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred hcChHhHHhccHHHHHHH
Confidence 554333333333444433
No 397
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=53.62 E-value=93 Score=23.33 Aligned_cols=62 Identities=8% Similarity=0.003 Sum_probs=42.0
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChH
Q 036263 152 VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214 (305)
Q Consensus 152 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 214 (305)
.++..|++++..-. .++..+...+..-.|.++++.+.+.+..++..|..--+..+.+.|-+.
T Consensus 16 ~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 16 LCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 34566777654333 444444445566688999999998887777777666677778777654
No 398
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=52.49 E-value=1e+02 Score=27.32 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 275 (305)
...|+.-|...|++.+|.+..+++.-| ....+-+++.+.-+.|+-+..+.++++.-+.|. .|-+.+-++|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 456888899999999999999998866 557788888888889988888888888777663 445555566654
No 399
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.16 E-value=78 Score=25.45 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=22.5
Q ss_pred HHHHhcCcCChhHHHHHHHHHhh----cC-CCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263 168 VLNVCANVRTLGIGLWMHRYVPK----QD-FKDNVRVCNTLMDVYSRFGCIEFARQV 219 (305)
Q Consensus 168 ll~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~g~~~~a~~~ 219 (305)
+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.++...+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 33344445555555555544421 11 122333444445555555555544433
No 400
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=52.15 E-value=54 Score=20.93 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=8.4
Q ss_pred HHhcCChHHHHHHHH
Q 036263 108 YAKFGRMDLATVVFD 122 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~ 122 (305)
.++.|+++-...+++
T Consensus 4 A~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 4 AAQNGNLEILKFLLE 18 (89)
T ss_dssp HHHTTTHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 445566665555555
No 401
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.92 E-value=69 Score=27.88 Aligned_cols=177 Identities=12% Similarity=-0.020 Sum_probs=91.7
Q ss_pred HHHhcCChHHHHHHHHhcCc----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHhcCcCChhH
Q 036263 107 MYAKFGRMDLATVVFDVMRG----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL--TIISVLNVCANVRTLGI 180 (305)
Q Consensus 107 ~~~~~g~~~~a~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~ 180 (305)
..++.|+.+-+..+++.-.+ .....+.+...+..|+.+- .+.+.+.|..|+.. ...+.+...+..|+.+.
T Consensus 8 ~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 8 DAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred HHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Confidence 34567898888888775432 1123344555566777654 34445666666532 12334555567788877
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCch---hhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL---VSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
+..+++.-....-..+.. -.+.+...+..|+.+-+..+++.-..++. ...+ .+...+..|+.+-+..++ +.
T Consensus 84 v~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~t-pLh~A~~~~~~~~v~~Ll----~~ 157 (413)
T PHA02875 84 VEELLDLGKFADDVFYKD-GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFS-PLHLAVMMGDIKGIELLI----DH 157 (413)
T ss_pred HHHHHHcCCcccccccCC-CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH----hc
Confidence 666554321111011111 12334445667888777777776554432 2233 344556677776544444 45
Q ss_pred CCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263 258 VFKTDE---VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 258 g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
|..++. .-.+.+..| +..|+.+-+ +.+. ..|..|+.
T Consensus 158 g~~~~~~d~~g~TpL~~A-~~~g~~eiv----~~Ll-~~ga~~n~ 196 (413)
T PHA02875 158 KACLDIEDCCGCTPLIIA-MAKGDIAIC----KMLL-DSGANIDY 196 (413)
T ss_pred CCCCCCCCCCCCCHHHHH-HHcCCHHHH----HHHH-hCCCCCCc
Confidence 544432 223344333 445665544 4444 55666654
No 402
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=51.86 E-value=43 Score=23.01 Aligned_cols=41 Identities=22% Similarity=0.100 Sum_probs=30.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhh
Q 036263 50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC 90 (305)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 90 (305)
.++..+...+..-.|.++++.+.+.+..++..|.--.|..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L 45 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELL 45 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 46777777778889999999999887777766664444443
No 403
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=51.08 E-value=75 Score=21.61 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccC
Q 036263 201 NTLMDVYSRFGCIEFARQVFQRMHKR 226 (305)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (305)
..++..|...|+.++|...++++..|
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~ 31 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP 31 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC
Confidence 34455556666666666666666544
No 404
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.68 E-value=1.7e+02 Score=25.17 Aligned_cols=32 Identities=9% Similarity=-0.114 Sum_probs=20.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhh
Q 036263 56 CRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC 90 (305)
Q Consensus 56 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 90 (305)
...++++.|+.+|+...- .|....=...+.+|
T Consensus 194 iglk~fe~Al~~~e~~v~---~Pa~~vs~~hlEaY 225 (422)
T KOG2582|consen 194 IGLKRFERALYLLEICVT---TPAMAVSHIHLEAY 225 (422)
T ss_pred eccccHHHHHHHHHHHHh---cchhHHHHHHHHHH
Confidence 446789999999998764 45444334444443
No 405
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.68 E-value=1.2e+02 Score=23.23 Aligned_cols=21 Identities=10% Similarity=0.041 Sum_probs=12.5
Q ss_pred HHhcCcCChhHHHHHHHHHhh
Q 036263 170 NVCANVRTLGIGLWMHRYVPK 190 (305)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~ 190 (305)
..|.+.|.+++|.++++....
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345666666666666666554
No 406
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.65 E-value=1.4e+02 Score=29.14 Aligned_cols=37 Identities=5% Similarity=0.021 Sum_probs=20.6
Q ss_pred cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 036263 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209 (305)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 209 (305)
......+.+..+++.+....-.++....+.++.-|++
T Consensus 602 l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 602 LKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 3344445555566665554444556666666666654
No 407
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=48.14 E-value=18 Score=22.03 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=16.4
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCH
Q 036263 241 NGFVGEALEYFNLMQKGV-FKTDE 263 (305)
Q Consensus 241 ~g~~~~a~~~~~~m~~~g-~~p~~ 263 (305)
.-|++.|...|.++...| ++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 447888888888888766 55443
No 408
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.23 E-value=2.7e+02 Score=26.72 Aligned_cols=143 Identities=9% Similarity=-0.013 Sum_probs=86.0
Q ss_pred HHHHhcCChHHHHHHHHhcCc-------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCCh
Q 036263 106 DMYAKFGRMDLATVVFDVMRG-------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL 178 (305)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 178 (305)
+-+.+.+.+++|+...+.... ..++..+|..+.-.|++++|-...-.|... +..-|--.+..+...++.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccccc
Confidence 346677888888888877655 234777888888888888888877777532 445555555555555555
Q ss_pred hHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc-------------c-------CchhhHHHHHHHH
Q 036263 179 GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH-------------K-------RTLVSWNSIIVGF 238 (305)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------------~-------~~~~~~~~li~~~ 238 (305)
.....+ +....-..+..+|..++..+.. .+...=.++.++-. . .+...-..|..-|
T Consensus 440 ~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 440 TDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLY 515 (846)
T ss_pred chhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHH
Confidence 433322 2222222456677777777666 22221111111111 0 1222334478888
Q ss_pred HhcCChHHHHHHHHHHHH
Q 036263 239 AVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 239 ~~~g~~~~a~~~~~~m~~ 256 (305)
...++++.|+.++-..+.
T Consensus 516 l~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHccChHHHHHHHHhccC
Confidence 889999999988877654
No 409
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=47.16 E-value=1.7e+02 Score=24.37 Aligned_cols=61 Identities=8% Similarity=-0.055 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhccc-CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK-RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
......++....+.|..+.-..+++.... ++...-..++.+.+...+.+...++++.....
T Consensus 169 ~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 169 PDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSN 230 (324)
T ss_dssp HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCC
Confidence 33344444444455554443444444332 23344455555555555555555555555443
No 410
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=47.14 E-value=1.8e+02 Score=24.75 Aligned_cols=84 Identities=18% Similarity=0.142 Sum_probs=53.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHc---CCCCCHHHH--HHHHHHhcCcCChhHHHHHHHHHhh-----cCCCCChhH-H
Q 036263 132 ALLNGFVKRDYFEEALEYFRVMQIS---GVEPDYLTI--ISVLNVCANVRTLGIGLWMHRYVPK-----QDFKDNVRV-C 200 (305)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~-~ 200 (305)
.++...-+.++.++|++.++++.+. --.|+...| +.+...+...|+..++.+.+++..+ .++++++++ |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3445555566888888888887653 235665555 3455566778889999998888877 677775543 4
Q ss_pred HHHHH-HHHhcCChHH
Q 036263 201 NTLMD-VYSRFGCIEF 215 (305)
Q Consensus 201 ~~li~-~~~~~g~~~~ 215 (305)
..+-. .|-+.|++..
T Consensus 160 Y~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 44433 3444555443
No 411
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=47.07 E-value=39 Score=21.28 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=32.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036263 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278 (305)
Q Consensus 238 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 278 (305)
....|+.+.+.+++++..+.|..|.......+..+..+.|+
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45578999999999999988988888777777777666554
No 412
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=46.66 E-value=2.4e+02 Score=26.03 Aligned_cols=47 Identities=2% Similarity=-0.118 Sum_probs=26.1
Q ss_pred CChHHHHHHHHhcCc--cccHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 036263 112 GRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQISGV 158 (305)
Q Consensus 112 g~~~~a~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 158 (305)
=+.+.-.++++++.. ...+..++.+....|-......+.+.+....+
T Consensus 323 ~~~e~l~~l~~~~~~~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 323 LSEEQLEQLWRQLYEKKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 345555555555543 34566777777777765555444444444333
No 413
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.44 E-value=2.4e+02 Score=25.98 Aligned_cols=149 Identities=13% Similarity=0.084 Sum_probs=94.6
Q ss_pred HHhcCChHHHHHHHHhcCc----------cccHHHHHHHHHcCC-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036263 108 YAKFGRMDLATVVFDVMRG----------CDFWTALLNGFVKRD-----YFEEALEYFRVMQISGVEPDYLTIISVLNVC 172 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~----------~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (305)
+....+.+.|...|+...+ ......+...|.+.. +.+.|+.++..--+.| .|+...+-..+.-.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYET 337 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHc
Confidence 4456788888888887733 334566777776643 5677999998877776 46665555444444
Q ss_pred cC-cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH--hcCChHHHHHHHHhcccCch-hhHHHH--HHHHHhcCChHH
Q 036263 173 AN-VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS--RFGCIEFARQVFQRMHKRTL-VSWNSI--IVGFAVNGFVGE 246 (305)
Q Consensus 173 ~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~-~~~~~l--i~~~~~~g~~~~ 246 (305)
.. ..+...|.++|....+.|. +....+.+++...+ -..+...|..++++.-+.+. .+...+ +..+.. ++++.
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~ 415 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDT 415 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccH
Confidence 44 4567899999999999883 44443433333333 33468889999988876542 222222 223333 77777
Q ss_pred HHHHHHHHHHCCC
Q 036263 247 ALEYFNLMQKGVF 259 (305)
Q Consensus 247 a~~~~~~m~~~g~ 259 (305)
+.-.+..+.+.|.
T Consensus 416 ~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 416 ALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHhhh
Confidence 7777777666653
No 414
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=46.36 E-value=1e+02 Score=21.82 Aligned_cols=109 Identities=13% Similarity=0.136 Sum_probs=66.1
Q ss_pred HHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHhc-------CcCChhHHHHHH
Q 036263 116 LATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI---ISVLNVCA-------NVRTLGIGLWMH 185 (305)
Q Consensus 116 ~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~---~~ll~~~~-------~~~~~~~a~~~~ 185 (305)
-|..++.......-+...++.+....---.++++..++....-.|....- +.-|..|- ..+...-+..++
T Consensus 7 IA~~~l~~l~~s~~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl 86 (126)
T PF10155_consen 7 IAIEILVKLINSPNFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLVCVFL 86 (126)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHH
Confidence 34444444433333555666666666666777777777666545543322 12233333 233445566778
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 186 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
+.+.+.++......+.-+-.-|.+-.+..||..+|+-++
T Consensus 87 ~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 87 QSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 888888876666666666666777788899999888664
No 415
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=45.99 E-value=3.2e+02 Score=27.23 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=30.4
Q ss_pred CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhcccC
Q 036263 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG--CIEFARQVFQRMHKR 226 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~ 226 (305)
+++....+.+....+.. .....-...++.+|.+.+ ++++|+....++++.
T Consensus 792 ~KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 792 SKVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 33444444443333321 223445677888888888 888888888888743
No 416
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.53 E-value=2e+02 Score=25.21 Aligned_cols=96 Identities=10% Similarity=0.108 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHhcCcCChhHHHHHHHHHhh-----cCCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHhccc---
Q 036263 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPK-----QDFKD-------NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--- 225 (305)
Q Consensus 161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--- 225 (305)
+......++.++....+..+..+..+.... .+... .-.+.-.|++.++-.|++..|.++++.+.-
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Confidence 344444455555666655555544444211 11111 113345678888889999999999888761
Q ss_pred --------CchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 226 --------RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 226 --------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
-.+.+|--+.-+|...+++.+|.+.|....-
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1456777788888999999999999887653
No 417
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.95 E-value=2.1e+02 Score=24.86 Aligned_cols=56 Identities=7% Similarity=-0.096 Sum_probs=38.9
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHh--cCcCChhHHHHHHHHHhhc
Q 036263 135 NGFVKRDYFEEALEYFRVMQISGVEPDYL--TIISVLNVC--ANVRTLGIGLWMHRYVPKQ 191 (305)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~--~~~~~~~~a~~~~~~~~~~ 191 (305)
..+.+.+++..|.++|+.+..+ +.++.. .+..+..+| -..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999999887 555544 344444444 3456777888888877655
No 418
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.69 E-value=70 Score=19.33 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=36.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 54 RHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF 121 (305)
Q Consensus 54 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 121 (305)
.+.+.|++=+|.++++.+-..--.|....+..+|..+ ......+.|+...|..++
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A-------------~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLA-------------VALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHH-------------HHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHH-------------HHHHHHHhCCHHHHHHhC
Confidence 3556899999999999998654444566666666542 222336778888887764
No 419
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.53 E-value=1.1e+02 Score=21.59 Aligned_cols=43 Identities=7% Similarity=0.118 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 180 IGLWMHRYVPKQDFKDN-VRVCNTLMDVYSRFGCIEFARQVFQR 222 (305)
Q Consensus 180 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (305)
.+.++|..|...|+... +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888888876554 56677778888888888888888864
No 420
>PHA02940 hypothetical protein; Provisional
Probab=44.51 E-value=1.7e+02 Score=23.57 Aligned_cols=70 Identities=10% Similarity=-0.026 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036263 100 VSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV 171 (305)
Q Consensus 100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (305)
+...+..-|.+.++.++-..+-+.+.+..+|. +..--...+++.+++-+..|.+..-....-||+.|..+
T Consensus 144 tv~~la~~yvq~vk~d~r~~~a~~l~keLs~~--~d~~enepdle~d~keie~~lE~~~dl~rGtY~vL~~a 213 (315)
T PHA02940 144 TVILLAGRYVQDVKKDDRRTIANKLSKELSWT--IDYQENEPDLESDFKEIEEELEEKDDLSRGTYKVLKRA 213 (315)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhhhhHH--HHHHhcCcchhhhHHHHHHHHhccchhhhhHHHHHHHH
Confidence 34455566666666665555555443322221 11122233455666666666555545555566666554
No 421
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.47 E-value=1.8e+02 Score=24.37 Aligned_cols=70 Identities=4% Similarity=0.003 Sum_probs=51.0
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHh----------cCChHHHHHHH
Q 036263 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAV----------NGFVGEALEYF 251 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~a~~~~ 251 (305)
.++++.+.+.++.|.-..+..+.-.+.+.=.+.++..+|+.+....-. |..|+..||. .|++...++++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-fd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-FDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 467888888899999888888888888888889999999988743222 6666666653 45666555554
Q ss_pred H
Q 036263 252 N 252 (305)
Q Consensus 252 ~ 252 (305)
+
T Consensus 342 Q 342 (370)
T KOG4567|consen 342 Q 342 (370)
T ss_pred h
Confidence 4
No 422
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=44.43 E-value=43 Score=23.25 Aligned_cols=43 Identities=21% Similarity=0.056 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHh
Q 036263 47 QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG 89 (305)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 89 (305)
.-..++..+...+..-.|.++++.+.+.|...+..|.---|..
T Consensus 9 ~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~ 51 (120)
T PF01475_consen 9 QRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDL 51 (120)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHH
Confidence 3456788888888899999999999998888777665444443
No 423
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=44.38 E-value=1.4e+02 Score=23.46 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=60.6
Q ss_pred ChHHHHHHHHhccc-----------CchhhHHHHHHHHHhcC---------ChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 036263 212 CIEFARQVFQRMHK-----------RTLVSWNSIIVGFAVNG---------FVGEALEYFNLMQKGVFKT-DEVSFTGAL 270 (305)
Q Consensus 212 ~~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~g~~p-~~~~~~~li 270 (305)
..+.|..++.+|-- ....-|..+..+|+++| +.+.-.++++...+.|++- =++.|..+|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 36788888888863 25567888999999887 5667778888888888533 337899999
Q ss_pred HHHhccCcHHHHHHHHHHHH
Q 036263 271 TACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~ 290 (305)
+.-.-.-+.++..+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 87777778899999888765
No 424
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=43.73 E-value=1.2e+02 Score=26.82 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=57.9
Q ss_pred HHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhc
Q 036263 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN 241 (305)
Q Consensus 165 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 241 (305)
...|+.-|...|...+|...++++.-- +-....++.+++.+.-+.|+-...+.+++..-+....|-+.|-++|-+-
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV 587 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhh
Confidence 446777788888888888887765321 1234678899999999999988888888888788888888888888764
No 425
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.17 E-value=3.7e+02 Score=27.29 Aligned_cols=158 Identities=9% Similarity=-0.051 Sum_probs=85.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcC-----CCC----CC--hhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 55 HCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD-----FPS----NN--VMVSTALLDMYAKFGRMDLATVVFDV 123 (305)
Q Consensus 55 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-----~~~----~~--~~~~~~ll~~~~~~g~~~~a~~~~~~ 123 (305)
|...|...+|++.|.+..+ |+.-+......+....-+ .|+ +. ..-|-.+++.+-+.+..+.+.++-..
T Consensus 930 yl~tge~~kAl~cF~~a~S-g~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALS-GFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eecCCchHHHHHHHHHHhh-ccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6677889999999988765 333333222222221111 111 22 34467788888888888876666544
Q ss_pred c----Cc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHhcCcCCh------------
Q 036263 124 M----RG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT----IISVLNVCANVRTL------------ 178 (305)
Q Consensus 124 ~----~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~------------ 178 (305)
. +. ..+++++.......|.+-+|...+-. .||..+ ..-++..++..|.+
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~ 1082 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEALATFPFIGLE 1082 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchH
Confidence 3 32 44577777888888888777665532 344333 33344444444443
Q ss_pred hHHHH-HHHHHhhcCCCCChhH-HHHHHHHHHhcCChHHHHHHH
Q 036263 179 GIGLW-MHRYVPKQDFKDNVRV-CNTLMDVYSRFGCIEFARQVF 220 (305)
Q Consensus 179 ~~a~~-~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~ 220 (305)
++... +++..-+.. +..... |+-|--.+...+++.+|-.+.
T Consensus 1083 ~eve~~l~esaaRs~-~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSS-PSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHHHHhhcC-ccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 34444 333333332 333333 444444456667777765543
No 426
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=41.96 E-value=86 Score=21.72 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=12.6
Q ss_pred HHHhcCcCChhHHHHHHHHHhhcC
Q 036263 169 LNVCANVRTLGIGLWMHRYVPKQD 192 (305)
Q Consensus 169 l~~~~~~~~~~~a~~~~~~~~~~~ 192 (305)
++.+.++...++|.++.+.|.++|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 333445555555555555555555
No 427
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=41.87 E-value=1.2e+02 Score=26.47 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=34.4
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH--------------------hcccCchhhHHHHHHHHHhcCChH
Q 036263 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQ--------------------RMHKRTLVSWNSIIVGFAVNGFVG 245 (305)
Q Consensus 186 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--------------------~~~~~~~~~~~~li~~~~~~g~~~ 245 (305)
+.+.+.|.-.|...+...++.+...-.+++|.+--. -+..||+..|.++..+++.-+-+.
T Consensus 175 ~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 175 QRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAALY 254 (391)
T ss_pred HHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCccccC
Confidence 333444545555555555555555555666653322 222468888888887777665444
No 428
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.86 E-value=1.3e+02 Score=21.78 Aligned_cols=61 Identities=7% Similarity=0.081 Sum_probs=38.7
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcCc-CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263 152 VMQISGVEPDYLTIISVLNVCANV-RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213 (305)
Q Consensus 152 ~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (305)
.+++.|++++.. -..++..+... +..-.|.++++.+.+.+...+..|..--++.+.+.|-+
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 455667665542 23344444443 45667888888888887666766666667777777754
No 429
>PRK09687 putative lyase; Provisional
Probab=41.64 E-value=2e+02 Score=23.70 Aligned_cols=181 Identities=12% Similarity=-0.001 Sum_probs=104.7
Q ss_pred CChhHHHHHHHHHHhcCCh----HHHHHHHHhc-Cc---cccHHHHHHHHHcCCCh-----HHHHHHHHHHHHcCCCCCH
Q 036263 96 NNVMVSTALLDMYAKFGRM----DLATVVFDVM-RG---CDFWTALLNGFVKRDYF-----EEALEYFRVMQISGVEPDY 162 (305)
Q Consensus 96 ~~~~~~~~ll~~~~~~g~~----~~a~~~~~~~-~~---~~~~~~li~~~~~~g~~-----~~a~~~~~~m~~~g~~p~~ 162 (305)
++...-...+.+++..|+- +++...+..+ .+ ..+-...+.+++..+.. ..+...+.... ..++.
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~ 142 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITA---FDKST 142 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHh---hCCCH
Confidence 4555555666666776653 3455555544 22 23333444444444321 22333333322 24456
Q ss_pred HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC-hHHHHH-HHHhcccCchhhHHHHHHHHHh
Q 036263 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC-IEFARQ-VFQRMHKRTLVSWNSIIVGFAV 240 (305)
Q Consensus 163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~-~~~~~~~~~~~~~~~li~~~~~ 240 (305)
.+-...+.++++.++. .+...+-.+.+ .++..+-...+.++++.+. ...+.. +...+..++...-...+.++.+
T Consensus 143 ~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 143 NVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 6666777777777764 44455555544 2445566666777776531 334444 4444456777888888899999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 241 NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 241 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.|+. .|...+-+..+.+ + .....+.++...|+. +|...+..+.
T Consensus 219 ~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 219 RKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred cCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 8884 5666655555543 2 234677888888885 6777777776
No 430
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.51 E-value=52 Score=21.16 Aligned_cols=39 Identities=15% Similarity=0.035 Sum_probs=28.6
Q ss_pred CCCchHhHH-HHHHHHHhcCChhHHHHHHHHHHhCC-CCCC
Q 036263 41 TIDTTVQWT-SSISRHCRSGCILEAALEFTRMRLYG-TNPS 79 (305)
Q Consensus 41 ~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~ 79 (305)
++.+..-|| ++++.+.++.-.++|+++++-|.++| +.|.
T Consensus 26 ~~~~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrGEi~~E 66 (98)
T COG4003 26 PKIDFSGYNPTVIDFLRRCDTEEEALEIINYLEKRGEITPE 66 (98)
T ss_pred ccCCcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhCCCCHH
Confidence 344445555 46677888888999999999999987 4443
No 431
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.33 E-value=1.7e+02 Score=22.75 Aligned_cols=125 Identities=6% Similarity=-0.056 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH--HHHHHHHHhcCChHHHHHHHHhcc-cCchhhHH-----H
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC--NTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWN-----S 233 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~-----~ 233 (305)
+..|..++.+... +.. +.....+.+....-...-.++ -.+...+...|++++|..-++... .+....+. .
T Consensus 54 S~~Y~~~i~~~~a-k~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 54 SAQYQNAIKAVQA-KKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHhc-CCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 4455555555532 222 333444444443211111122 234566788999999999998766 33223333 3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 234 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
|.+.....|.+|+|+..++.....++. ......--..+...|+-++|+.-|+...
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHH
Confidence 456678899999999999988776542 2333344567888999999999999887
No 432
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=41.28 E-value=1e+02 Score=20.21 Aligned_cols=42 Identities=10% Similarity=0.017 Sum_probs=23.1
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
++|+-....|+..|..+|..+++.+.-.=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555666666666665555544444555555555543
No 433
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=39.59 E-value=2e+02 Score=23.19 Aligned_cols=52 Identities=12% Similarity=0.136 Sum_probs=33.8
Q ss_pred HHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263 220 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273 (305)
Q Consensus 220 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 273 (305)
|+-..+|.......++..|. .+++++|.+++.++-+.|+.|.. ..+.+.+.+
T Consensus 231 fKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 231 FKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred hhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 33333566666677776655 45788999999998888887754 333444443
No 434
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.26 E-value=3.8e+02 Score=26.18 Aligned_cols=164 Identities=12% Similarity=0.097 Sum_probs=86.5
Q ss_pred HHHHhcCChHHHHHHHHhcCc--cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHH
Q 036263 106 DMYAKFGRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW 183 (305)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 183 (305)
..|...|+++.|.++-..-++ ..++..-...|...+++..|-+++.++.+ .|..+.--+....+.+.-..
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~~~~L~~ 437 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQERALRT 437 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCCHHHHHH
Confidence 457788999999987766544 33444555667778888888888888732 34433333444444442222
Q ss_pred HH-HHHhhcCCCCChhH-----HHHHHHHHH-hcCChH----HHHHHHHhcc--------c-----CchhhHHHHHHHHH
Q 036263 184 MH-RYVPKQDFKDNVRV-----CNTLMDVYS-RFGCIE----FARQVFQRMH--------K-----RTLVSWNSIIVGFA 239 (305)
Q Consensus 184 ~~-~~~~~~~~~~~~~~-----~~~li~~~~-~~g~~~----~a~~~~~~~~--------~-----~~~~~~~~li~~~~ 239 (305)
++ +++.+ ++|...+ .+.++..|. +.++++ ++..-++.-. . .+...+.+....+.
T Consensus 438 ~L~KKL~~--lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~ 515 (911)
T KOG2034|consen 438 FLDKKLDR--LTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLA 515 (911)
T ss_pred HHHHHHhh--CChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHH
Confidence 22 22222 2333222 222333332 222222 2222222111 1 12223344455556
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263 240 VNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288 (305)
Q Consensus 240 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (305)
..|+.+.+..+-.-|.. |..++.-+...|.+++|++++..
T Consensus 516 ~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 516 SHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777776666555443 45666677777788887777654
No 435
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.15 E-value=1.6e+02 Score=25.58 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=21.5
Q ss_pred hcCChHHHHHHHHhcccC--c-h--hhHHHHHHHHH--hcCChHHHHHHHHHHHH
Q 036263 209 RFGCIEFARQVFQRMHKR--T-L--VSWNSIIVGFA--VNGFVGEALEYFNLMQK 256 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~--~-~--~~~~~li~~~~--~~g~~~~a~~~~~~m~~ 256 (305)
+.+++..|.++|+++..+ . . ..+..+..+|. ...++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455555555555555432 1 1 12333333332 34445555555555444
No 436
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.73 E-value=2.7e+02 Score=24.42 Aligned_cols=94 Identities=10% Similarity=0.066 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc---------CCCCC
Q 036263 128 DFWTALLNGFVKRDYFEEALEYFRVMQISG--VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ---------DFKDN 196 (305)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 196 (305)
..+.-+...|...|+++.|++.+.+.+..- .+.....+..+|..-...|+|..+..+..+.... .+++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 346777888888899999998888755431 1223455666677777778887777666665543 12333
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263 197 VRVCNTLMDVYSRFGCIEFARQVFQRM 223 (305)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (305)
...+..+.... .+++..|.+.|=..
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhC
Confidence 34444444433 33566666555443
No 437
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.62 E-value=2.1e+02 Score=23.08 Aligned_cols=17 Identities=6% Similarity=0.212 Sum_probs=10.4
Q ss_pred HhcCChHHHHHHHHhcc
Q 036263 208 SRFGCIEFARQVFQRMH 224 (305)
Q Consensus 208 ~~~g~~~~a~~~~~~~~ 224 (305)
...+++++|.++|+++.
T Consensus 165 a~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456666777766655
No 438
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=37.86 E-value=2.3e+02 Score=24.06 Aligned_cols=67 Identities=9% Similarity=-0.036 Sum_probs=46.8
Q ss_pred HHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036263 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274 (305)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 274 (305)
+.|..++-...++.+.+...+...-..++.+.. .|+-+.-...++.+.+.|++++......+...++
T Consensus 286 ~lK~r~~y~~~kfvd~L~r~d~e~~~~L~~ai~-~~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 286 YLKARDFYSWPKFVDFLARRDPEISLQLTDAIL-NGDEEAFYTALRELKKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred HHhhhhhcchHHHHHHHhccChHHHHHHHHHHH-cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 344444555667777776666666666666655 4566677778888999999999888888776654
No 439
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.68 E-value=1.5e+02 Score=21.05 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHH
Q 036263 245 GEALEYFNLMQKGVFKTDE-VSFTGALTACSHAGLIEDGLQYFD 287 (305)
Q Consensus 245 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~ 287 (305)
+...++|..|...|+--.. ..|......+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4467788999888865544 455566667778899999998886
No 440
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=37.51 E-value=86 Score=22.69 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=32.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHh
Q 036263 51 SISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG 89 (305)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 89 (305)
++.-+-+.|-+.+...++++|.+.|+..+...|+.+++-
T Consensus 115 vL~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 115 VLALAKSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred HHHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 344455678899999999999999999999999887764
No 441
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=37.26 E-value=2e+02 Score=22.37 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=30.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhccc------------------CchhhHHHHHHHHHhcCChHHHHHHHH
Q 036263 202 TLMDVYSRFGCIEFARQVFQRMHK------------------RTLVSWNSIIVGFAVNGFVGEALEYFN 252 (305)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~------------------~~~~~~~~li~~~~~~g~~~~a~~~~~ 252 (305)
+++..|-+..++.+..++++.|.+ +--...|.....|.+.|..|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 445555555566666666655542 112345666666777777777777766
No 442
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=36.87 E-value=1.5e+02 Score=24.72 Aligned_cols=55 Identities=18% Similarity=0.105 Sum_probs=25.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHhccCcHHHHHHHHHHHH
Q 036263 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL--TACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 236 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m~ 290 (305)
..+...+.++.|+..++......-.|-...|..|+ +.|...|..+.|..+++.+.
T Consensus 221 ~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~ 277 (301)
T TIGR03362 221 RALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALD 277 (301)
T ss_pred HHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555432222233333333333 23455555555555555554
No 443
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=36.80 E-value=1.2e+02 Score=19.87 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=8.7
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 036263 238 FAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 238 ~~~~g~~~~a~~~~~~m~~ 256 (305)
....|++++|...+++..+
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3344445555444444443
No 444
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.60 E-value=2.9e+02 Score=25.26 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=13.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhcc
Q 036263 202 TLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 44555555666666666655554
No 445
>PRK09462 fur ferric uptake regulator; Provisional
Probab=36.55 E-value=1e+02 Score=22.38 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=33.0
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhcccC----chhhHHHHHHHHHhcCChH
Q 036263 186 RYVPKQDFKDNVRVCNTLMDVYSRF-GCIEFARQVFQRMHKR----TLVSWNSIIVGFAVNGFVG 245 (305)
Q Consensus 186 ~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~ 245 (305)
+.+.+.|+.++.. -..++..+... +..-.|.++++.+.+. +..|.-..+..+...|-+.
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455667665544 33444444443 4566788888887642 3445445556666666443
No 446
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=36.50 E-value=3.6e+02 Score=25.18 Aligned_cols=182 Identities=12% Similarity=0.019 Sum_probs=92.4
Q ss_pred HHhcCChHHHHHHHHhcCcc------------ccHHHHHH--HHHcCCChHHHHHHHH--------HHHHcCCCCCHHHH
Q 036263 108 YAKFGRMDLATVVFDVMRGC------------DFWTALLN--GFVKRDYFEEALEYFR--------VMQISGVEPDYLTI 165 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~~------------~~~~~li~--~~~~~g~~~~a~~~~~--------~m~~~g~~p~~~t~ 165 (305)
.+-.+++..|...++.+.+. ..+...+. .+-..|+.+.|...|. .....+...+..++
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 33458888888888877541 12222222 2345699999999997 44445555555554
Q ss_pred HHH----HHHhcCcCChhH--HHHHHHHHhhc-CCCC--ChhHHH-HHHHHHHhcCC---------hHHHHHHH-Hhccc
Q 036263 166 ISV----LNVCANVRTLGI--GLWMHRYVPKQ-DFKD--NVRVCN-TLMDVYSRFGC---------IEFARQVF-QRMHK 225 (305)
Q Consensus 166 ~~l----l~~~~~~~~~~~--a~~~~~~~~~~-~~~~--~~~~~~-~li~~~~~~g~---------~~~a~~~~-~~~~~ 225 (305)
..+ |.-+......++ ..++++.+... .-.+ +..++. .++.++...-. +.++.+.. +....
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN 530 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence 432 112222222333 77777776542 1122 222333 33444432221 23344444 22222
Q ss_pred Cch--hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC--CHHHHH-----HHHHHHhccCcHHHHHHHHHHHH
Q 036263 226 RTL--VSWNSIIVGFAVNGFVGEALEYFNLMQKGVF-KT--DEVSFT-----GALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 226 ~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p--~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.-. .+.+.|-.-+. .|+..+..+.........- .| ....|. .+...+...|+.++|.....+..
T Consensus 531 ~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 531 SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 211 22333333333 7888776666554322111 12 334443 33344677899999999888776
No 447
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.22 E-value=1.1e+02 Score=22.18 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=40.1
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhccc-----CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036263 194 KDNVRVCNTLMDVYSRFGC---IEFARQVFQRMHK-----RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263 (305)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 263 (305)
.++..+--.+..++.+..+ ..+...+++++.+ ..-...--|.-++.+.++++++.++.+.+.+. .||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCc
Confidence 4455555555666666554 4445556666653 12233344556777788888888888777763 4544
No 448
>COG5210 GTPase-activating protein [General function prediction only]
Probab=35.92 E-value=3.3e+02 Score=24.63 Aligned_cols=81 Identities=11% Similarity=0.049 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 036263 143 FEEALEYFRVMQISGVEPDY-----LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217 (305)
Q Consensus 143 ~~~a~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 217 (305)
-+.|...+..+.+....|+. .........+.. =-.+..-+++..+.+.|+.....++..++..+.+.-..+.|.
T Consensus 319 Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~-~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~l 397 (496)
T COG5210 319 EEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDD-LVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYAL 397 (496)
T ss_pred hHHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHH
Confidence 56777777776662222321 111111111111 111223467788888888888888888888888888888888
Q ss_pred HHHHhcc
Q 036263 218 QVFQRMH 224 (305)
Q Consensus 218 ~~~~~~~ 224 (305)
++++.+-
T Consensus 398 riwD~lf 404 (496)
T COG5210 398 RIWDCLF 404 (496)
T ss_pred HHHHHHH
Confidence 8888775
No 449
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.57 E-value=2.6e+02 Score=23.19 Aligned_cols=27 Identities=11% Similarity=-0.138 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263 164 TIISVLNVCANVRTLGIGLWMHRYVPK 190 (305)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~ 190 (305)
.-...+..+...|++..|.+++.+..+
T Consensus 129 ~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 129 QTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334445555666777777666665544
No 450
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=35.51 E-value=2.9e+02 Score=23.80 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=40.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHHH
Q 036263 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS-HAGLIEDGLQYFDIMK 290 (305)
Q Consensus 235 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~ 290 (305)
|..+.+.|-+..|.++.+-+..-+..-|+......|..|+ ++++++-.+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 6677888888999998888888654435555556666554 7778877777777655
No 451
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.43 E-value=1.4e+02 Score=20.78 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcC
Q 036263 132 ALLNGFVKRDYFEEALEYFRVMQISG 157 (305)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g 157 (305)
++|..+.++.-.++|+++++-|.++|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 56677777777888888888888776
No 452
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.35 E-value=2.1e+02 Score=22.16 Aligned_cols=87 Identities=16% Similarity=0.253 Sum_probs=48.3
Q ss_pred HHHHHhcCChHHHHHHHHhccc------CchhhHHHHHH-HHHhcCC--hHHHHHHHHHHHHCCCCCCHH----HHHHHH
Q 036263 204 MDVYSRFGCIEFARQVFQRMHK------RTLVSWNSIIV-GFAVNGF--VGEALEYFNLMQKGVFKTDEV----SFTGAL 270 (305)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~a~~~~~~m~~~g~~p~~~----~~~~li 270 (305)
.-.....|++++|.+-++++.+ .-...|..+.. +++..+. +.+|..++.-.... ..|+.. .+...|
T Consensus 36 aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ps~~EL~V~~~~Yi 114 (204)
T COG2178 36 AIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RLPSPEELGVPPIAYI 114 (204)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCCHHHcCCCHHHHH
Confidence 3344556777777777777653 23445555555 5666554 34455555544443 233332 111122
Q ss_pred HH--------------HhccCcHHHHHHHHHHHHH
Q 036263 271 TA--------------CSHAGLIEDGLQYFDIMKK 291 (305)
Q Consensus 271 ~~--------------~~~~g~~~~a~~~~~~m~~ 291 (305)
.+ ..+.|+++.|...++-|..
T Consensus 115 lGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 115 LGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22 2356899999999998874
No 453
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.60 E-value=2.4e+02 Score=22.48 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHH
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEP-----DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 204 (305)
+|.|+--|.-...+.+|.+.|. .+.|+.| +...=..-|......|+.+.|.+....+...-+..|...+-.+.
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq 106 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQ 106 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHH
Q ss_pred HH----HHhcCChHHHHHHHHh
Q 036263 205 DV----YSRFGCIEFARQVFQR 222 (305)
Q Consensus 205 ~~----~~~~g~~~~a~~~~~~ 222 (305)
.- ..+.|..++|.++.+.
T Consensus 107 ~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 107 QLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
No 454
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=34.28 E-value=2.8e+02 Score=23.33 Aligned_cols=77 Identities=13% Similarity=0.184 Sum_probs=47.1
Q ss_pred HHHHHHHcCCChHHHHHHHH-HHHHcCCCCCH----HHHHHHHHHhcCcCChh-HHHHHHHHHhhcCCCCChhHHHHHHH
Q 036263 132 ALLNGFVKRDYFEEALEYFR-VMQISGVEPDY----LTIISVLNVCANVRTLG-IGLWMHRYVPKQDFKDNVRVCNTLMD 205 (305)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~----~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~ 205 (305)
.|.+-..+...+++.....+ +|++.+ -|+. ..|..+|++--.+.+-+ -|.+.+++ ...|..|+.
T Consensus 260 ~L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~ 329 (412)
T KOG2297|consen 260 ELQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLA 329 (412)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHH
Confidence 34444555556777666654 455555 4553 45777777765553322 24444444 456899999
Q ss_pred HHHhcCChHHHHH
Q 036263 206 VYSRFGCIEFARQ 218 (305)
Q Consensus 206 ~~~~~g~~~~a~~ 218 (305)
+++..|+.+-..-
T Consensus 330 af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 330 AFCSQGQSELELL 342 (412)
T ss_pred HHhcCChHHHHHH
Confidence 9999999776543
No 455
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=34.01 E-value=2.9e+02 Score=23.33 Aligned_cols=41 Identities=10% Similarity=-0.025 Sum_probs=26.1
Q ss_pred HHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC
Q 036263 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196 (305)
Q Consensus 154 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (305)
.++|+..|...+..++. ...|++..|+-+++.+-..|-..+
T Consensus 202 ~~E~v~~d~~al~~I~~--~S~GdLR~Ait~Lqsls~~gk~It 242 (346)
T KOG0989|consen 202 SKEGVDIDDDALKLIAK--ISDGDLRRAITTLQSLSLLGKRIT 242 (346)
T ss_pred HHhCCCCCHHHHHHHHH--HcCCcHHHHHHHHHHhhccCcccc
Confidence 45567777777766665 356777777777777765543333
No 456
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.01 E-value=4.9e+02 Score=25.97 Aligned_cols=131 Identities=11% Similarity=0.118 Sum_probs=64.7
Q ss_pred cCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcC--ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 036263 139 KRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVR--TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215 (305)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 215 (305)
..+++....+.+..-.+. ..+ ..-+..++.+|.+.+ ++++|......+.+.+ ...-...++..+- +-.
T Consensus 790 ~~~KVn~ICdair~~l~~--~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~----~~~ae~alkyl~f---LvD 860 (928)
T PF04762_consen 790 SESKVNKICDAIRKALEK--PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREED----PESAEEALKYLCF---LVD 860 (928)
T ss_pred cccHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcC----hHHHHHHHhHhee---ecc
Confidence 344555555444433322 222 334567788887777 7788888888877651 1111111111111 111
Q ss_pred HHHHHHhcccCchhhHH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263 216 ARQVFQRMHKRTLVSWN---SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288 (305)
Q Consensus 216 a~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (305)
+.++|+... .+|. +++-|--.+.|+.+=+-+++++++ ++|+..-|. |. ...++++.|++.+..
T Consensus 861 vn~Ly~~AL----G~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~--l~~~~rry~--ID--~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 861 VNKLYDVAL----GTYDLELALMVAQQSQKDPKEYLPFLQELQK--LPPLYRRYK--ID--DHLKRYEKALRHLSA 926 (928)
T ss_pred HHHHHHHHh----hhcCHHHHHHHHHHhccChHHHHHHHHHHHh--CChhheeee--Hh--hhhCCHHHHHHHHHh
Confidence 222222211 1221 234444556677777777777766 344433222 12 234778888776654
No 457
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=33.88 E-value=61 Score=15.49 Aligned_cols=27 Identities=7% Similarity=0.006 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036263 242 GFVGEALEYFNLMQKGVFKTDEVSFTGA 269 (305)
Q Consensus 242 g~~~~a~~~~~~m~~~g~~p~~~~~~~l 269 (305)
|+.+.|..+|+++.... +-+...|...
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y 27 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKY 27 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHH
Confidence 45667777777776642 2344444443
No 458
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=33.77 E-value=1.4e+02 Score=19.45 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=41.1
Q ss_pred HHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 036263 219 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283 (305)
Q Consensus 219 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 283 (305)
++..+.+..+.+....-..-....+.+++.++++.+...| ...|..+..++...|+...|.
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~LA~ 81 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDLAE 81 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHHHH
Confidence 4444444555555444444455667889999999998876 467888888887777665543
No 459
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=32.99 E-value=3.8e+02 Score=24.43 Aligned_cols=35 Identities=3% Similarity=-0.053 Sum_probs=20.7
Q ss_pred HHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190 (305)
Q Consensus 154 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 190 (305)
.+.|+..+......+... ..|++..|...++++..
T Consensus 201 ~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 201 KQENLKTDIEALRIIAYK--SEGSARDAVSILDQAAS 235 (507)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 345666666555555553 34677777777766643
No 460
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=32.67 E-value=1.5e+02 Score=19.54 Aligned_cols=29 Identities=7% Similarity=0.087 Sum_probs=14.4
Q ss_pred ChHHHHHHHHhcccCchhhHHHHHHHHHh
Q 036263 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAV 240 (305)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 240 (305)
+.+++.++++.++.+...+|..+..++-.
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 34455555555555555555555555443
No 461
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.44 E-value=3.5e+02 Score=23.80 Aligned_cols=168 Identities=10% Similarity=0.056 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHc---------CCCCCH
Q 036263 100 VSTALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQIS---------GVEPDY 162 (305)
Q Consensus 100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~p~~ 162 (305)
.+.-+.+.|..+|+++.|++.|.+.++ ...|-.+|..-.-.|+|..+..+..+.... -+.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 456678889999999999999999776 344777777777788888887777766543 122233
Q ss_pred HHHHHHHHHhcCcCChhHHHHHHHHHhhcC------CCCChhHHHHHHHHHHhcCChHHHHH-----HHHhcccCchhhH
Q 036263 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQD------FKDNVRVCNTLMDVYSRFGCIEFARQ-----VFQRMHKRTLVSW 231 (305)
Q Consensus 163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~-----~~~~~~~~~~~~~ 231 (305)
..+..+...+.+ ++..|.+.|-...... +.|...+....+.++.--++-+--.. .|+...+-....+
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence 333333333332 4444444443322111 22333333333344443333222222 2222223333344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHH
Q 036263 232 NSIIVGFAVNGFVGEALEYFNLMQKG-----VFKTDEVSFTGALT 271 (305)
Q Consensus 232 ~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~~~~~li~ 271 (305)
..+.+-| .+++...++++++++.. -+.|...+.-.+|+
T Consensus 310 ~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 310 EILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 4443333 34688888888887654 24555555555444
No 462
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=31.11 E-value=2.7e+02 Score=22.04 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=16.4
Q ss_pred ChHHHHHHHHhcCc-------------cccHHHHHHHHHcCC
Q 036263 113 RMDLATVVFDVMRG-------------CDFWTALLNGFVKRD 141 (305)
Q Consensus 113 ~~~~a~~~~~~~~~-------------~~~~~~li~~~~~~g 141 (305)
..+.|..++..|-- ..=|-.+..+|.+.|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g 177 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHG 177 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcC
Confidence 35666777766633 111556666666665
No 463
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=30.61 E-value=1.7e+02 Score=19.57 Aligned_cols=48 Identities=4% Similarity=-0.082 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192 (305)
Q Consensus 143 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 192 (305)
.+...+++..-.+. .....|+..|+.++.+.+.-..|..+-+.+...|
T Consensus 47 ~eq~~qmL~~W~~~--~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNK--TGRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 34444444433332 2234567777777777777777777766666555
No 464
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.31 E-value=2.6e+02 Score=21.72 Aligned_cols=30 Identities=13% Similarity=-0.130 Sum_probs=26.6
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 036263 45 TVQWTSSISRHCRSGCILEAALEFTRMRLY 74 (305)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 74 (305)
....+.+++.|...|+++.|-++|--+...
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 456788999999999999999999998875
No 465
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=30.05 E-value=4.6e+02 Score=24.48 Aligned_cols=161 Identities=9% Similarity=0.036 Sum_probs=91.4
Q ss_pred cHHHHHHHHH-cCCChHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHhcCcCChhHHHHHHHHHhhc----CCCCChh
Q 036263 129 FWTALLNGFV-KRDYFEEALEYFRVMQISGVEPDYL-----TIISVLNVCANVRTLGIGLWMHRYVPKQ----DFKDNVR 198 (305)
Q Consensus 129 ~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 198 (305)
++-.+...+. ...+++.|...+.+.....-.++.. .-..++..+.+.+... |...+++.++. +..+-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 3444555544 5677888888888654332223221 1224455555665555 88777776543 1112222
Q ss_pred HHHHH-HHHHHhcCChHHHHHHHHhccc-------CchhhHHHHHHHHH--hcCChHHHHHHHHHHHHCCC---------
Q 036263 199 VCNTL-MDVYSRFGCIEFARQVFQRMHK-------RTLVSWNSIIVGFA--VNGFVGEALEYFNLMQKGVF--------- 259 (305)
Q Consensus 199 ~~~~l-i~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~--------- 259 (305)
.+.-+ +..+...++...|.+.++.+.. +-+..+-.++.+.. +.+..+++.+.++++.....
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 33333 3333334788889998888762 23344444555543 45667778888777643221
Q ss_pred CCCHHHHHHHHHHH--hccCcHHHHHHHHHHHH
Q 036263 260 KTDEVSFTGALTAC--SHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 260 ~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~ 290 (305)
.|-..+|..+++.+ ...|+++.+...++.+.
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33456777777654 46788777777766665
No 466
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.90 E-value=4.1e+02 Score=25.05 Aligned_cols=86 Identities=8% Similarity=0.087 Sum_probs=60.8
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263 137 FVKRDYFEEALEYFRVMQISGVEPD------YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210 (305)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~p~------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 210 (305)
..+..++..+.+.|..-..- +..| ...+..+--+|....+.|.|.+++++..+.+ +-+..+--.+..+....
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHh
Confidence 34556677777777643321 1222 3445667777889999999999999999876 44555556667778888
Q ss_pred CChHHHHHHHHhcc
Q 036263 211 GCIEFARQVFQRMH 224 (305)
Q Consensus 211 g~~~~a~~~~~~~~ 224 (305)
|..++|..+....+
T Consensus 442 ~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 442 DKSEEALTCLQKIK 455 (872)
T ss_pred cchHHHHHHHHHHH
Confidence 89999988887765
No 467
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=29.76 E-value=1.4e+02 Score=21.64 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=40.9
Q ss_pred HHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273 (305)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 273 (305)
.|++.-..+--+-..|...++.+ .+.|-+.+...++++|.+.|+..+..+|+-+++-.
T Consensus 97 ~aR~~A~~lgL~V~GtlGvL~~a-k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 97 DARNVAKSLGLKVTGTLGVLALA-KSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHHHHHHHcCCeeeehhHHHHHH-HHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 45555555544444455555444 45677888889999999999999999998877654
No 468
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.22 E-value=2.7e+02 Score=21.57 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=23.9
Q ss_pred HHhcCChHHHHHHHHhcCc--------cccHHHHHH-HHHcCCC--hHHHHHHHHHHH
Q 036263 108 YAKFGRMDLATVVFDVMRG--------CDFWTALLN-GFVKRDY--FEEALEYFRVMQ 154 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~--------~~~~~~li~-~~~~~g~--~~~a~~~~~~m~ 154 (305)
....|++++|..-++.+.+ ...|..+.. +++..+. +-+|..++....
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~ 96 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILK 96 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHh
Confidence 3445777777776666533 233444444 4444443 334444444443
No 469
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=29.19 E-value=8.4e+02 Score=27.21 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=19.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHH
Q 036263 133 LLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLW 183 (305)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~ 183 (305)
-|......|+++.|...|+.+.+. .|+ ..+++-++..-...|.++.+.-
T Consensus 1455 qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~ 1504 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEIL 1504 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHh
Confidence 333344444444444444444432 222 3334444443334444433333
No 470
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=29.10 E-value=3.5e+02 Score=22.78 Aligned_cols=117 Identities=9% Similarity=0.064 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh---cCChHHHHHHH
Q 036263 144 EEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR---FGCIEFARQVF 220 (305)
Q Consensus 144 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~ 220 (305)
+.-+.++++..+.+ +-+.......|..+.+..+.+...+-++.+.... +-+...|...|+.... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34445555544441 2345555666677777777777777777776663 3356666666655443 22344555555
Q ss_pred Hhccc-------C--------------chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC
Q 036263 221 QRMHK-------R--------------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF-KTD 262 (305)
Q Consensus 221 ~~~~~-------~--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~ 262 (305)
.+... . -+..+..+..-...+|..+.|..+++-+.+.++ .|+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 44331 0 012233334445677888888888888877663 443
No 471
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.93 E-value=4.4e+02 Score=23.87 Aligned_cols=97 Identities=10% Similarity=0.000 Sum_probs=50.6
Q ss_pred HHHHHHH-HHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263 147 LEYFRVM-QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225 (305)
Q Consensus 147 ~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (305)
.+.++.. ...|+..+......+... ..|+...|..+++++...+ ....++..+...+. -
T Consensus 186 ~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~lg----------------~ 245 (484)
T PRK14956 186 QDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMIG----------------Y 245 (484)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHhC----------------C
Confidence 3444433 345676666666655543 4578888888887765332 11122332222221 1
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036263 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263 (305)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 263 (305)
.+...+..++.+....+....|+.++.+|.+.|..|..
T Consensus 246 ~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 246 HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 13333444455544444455677777777777665543
No 472
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=28.84 E-value=93 Score=16.02 Aligned_cols=24 Identities=4% Similarity=0.015 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036263 243 FVGEALEYFNLMQKGVFKTDEVSFTG 268 (305)
Q Consensus 243 ~~~~a~~~~~~m~~~g~~p~~~~~~~ 268 (305)
.++.|..+|++... +.|+..+|-.
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHH
Confidence 35677777777766 4566666543
No 473
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=28.32 E-value=1.6e+02 Score=18.61 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=21.7
Q ss_pred ChHHHHHHHHhccc---CchhhHHHHHHHHHhcC
Q 036263 212 CIEFARQVFQRMHK---RTLVSWNSIIVGFAVNG 242 (305)
Q Consensus 212 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g 242 (305)
+.+.|..++..++. ++...||++.+-+.++.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHcc
Confidence 45777778777773 57778888777666553
No 474
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.61 E-value=3.4e+02 Score=22.14 Aligned_cols=49 Identities=6% Similarity=-0.143 Sum_probs=23.8
Q ss_pred HhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 208 SRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
...|++-++++--.++.. .|+..|-.-.++.+..-+.++|.+=|....+
T Consensus 241 L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 241 LKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 334444444444444432 2444454444555555555555555555554
No 475
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.54 E-value=2.9e+02 Score=25.49 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=30.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcccC--chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
+...-.-++..|.+.|-.+.|.++.+.+-.. ...-|..-+.-+.++|+.+.+..+.+.+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455677788888888888888888877643 224566667777788887777766666554
No 476
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.49 E-value=4.6e+02 Score=23.64 Aligned_cols=39 Identities=8% Similarity=-0.068 Sum_probs=26.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036263 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277 (305)
Q Consensus 239 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 277 (305)
.+.++++.|..++.+|...|..|....-..+..+...-|
T Consensus 254 i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 254 IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 456889999999999888887776554444444443333
No 477
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=27.21 E-value=29 Score=20.05 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=13.7
Q ss_pred cCChHHHHHHHHHHHHCC-CCCC
Q 036263 241 NGFVGEALEYFNLMQKGV-FKTD 262 (305)
Q Consensus 241 ~g~~~~a~~~~~~m~~~g-~~p~ 262 (305)
.-|++.|...|..+...| ++|+
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~e 48 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPE 48 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CC
T ss_pred CCCHHHHHHHHHHHHHcCCCChH
Confidence 346777888888777766 5444
No 478
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.14 E-value=1.9e+02 Score=19.01 Aligned_cols=47 Identities=19% Similarity=0.060 Sum_probs=38.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCC
Q 036263 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV 295 (305)
Q Consensus 249 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 295 (305)
++|+-....|+..|...|..++.-..-.=..+...++++.|......
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~~~~ 75 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSGSRL 75 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHccccc
Confidence 78888888999999999999988887777888888888888744433
No 479
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=27.09 E-value=3.3e+02 Score=21.79 Aligned_cols=30 Identities=17% Similarity=0.093 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
..||--+.+-+...|+.++|..+|+-....
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 356777777888888888888888876664
No 480
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=26.97 E-value=2.1e+02 Score=19.42 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=11.9
Q ss_pred HHHHHHhcCChHHHHHHHHhccc
Q 036263 203 LMDVYSRFGCIEFARQVFQRMHK 225 (305)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~ 225 (305)
++..|...++.++|.+-+.++..
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~~ 30 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELKL 30 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhCC
Confidence 44445555555555555555543
No 481
>PF13934 ELYS: Nuclear pore complex assembly
Probab=26.65 E-value=3.3e+02 Score=21.62 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=50.0
Q ss_pred HHHHHHHh--cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC--chhhHHHHHHHHHh
Q 036263 165 IISVLNVC--ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR--TLVSWNSIIVGFAV 240 (305)
Q Consensus 165 ~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~ 240 (305)
|...+.++ ...+++++|.+.+-.- .+. ...-.-++.++...|+.+.|.++++.+..+ +......++.. ..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~--~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLI--PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCC--cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HH
Confidence 44444443 3445566665555211 111 112234666666677777777777776532 22223333333 55
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036263 241 NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274 (305)
Q Consensus 241 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 274 (305)
++.+.+|+.+-+...+.. ....+..++..+.
T Consensus 153 ~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred cCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 667777776655544421 1234444444444
No 482
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=26.47 E-value=3.6e+02 Score=22.00 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=50.8
Q ss_pred HHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC-----CHHHHHHHHHHHhccCcHH
Q 036263 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKT-----DEVSFTGALTACSHAGLIE 280 (305)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-----~~~~~~~li~~~~~~g~~~ 280 (305)
|.+.-+...=..+|+....| ..++..|.+.|+++.|..++--+...+ ... +...-..++......++|+
T Consensus 163 C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~ 237 (258)
T PF07064_consen 163 CARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWD 237 (258)
T ss_pred HHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHH
Confidence 33333333334455555332 256777888888888887776665443 222 3444556777778889999
Q ss_pred HHHHHHHHHH
Q 036263 281 DGLQYFDIMK 290 (305)
Q Consensus 281 ~a~~~~~~m~ 290 (305)
.+.++.+-+.
T Consensus 238 Lc~eL~RFL~ 247 (258)
T PF07064_consen 238 LCFELVRFLK 247 (258)
T ss_pred HHHHHHHHHH
Confidence 9999998887
No 483
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.36 E-value=3.1e+02 Score=23.88 Aligned_cols=55 Identities=11% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc------cCcHHHHHHHHH
Q 036263 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH------AGLIEDGLQYFD 287 (305)
Q Consensus 233 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~------~g~~~~a~~~~~ 287 (305)
..+..+.+.+++..|.++|+++......|+...+-..+..+++ .-++++|.+.++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
No 484
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=26.20 E-value=1.3e+02 Score=17.24 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=16.1
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCC
Q 036263 135 NGFVKRDYFEEALEYFRVMQISGVEPD 161 (305)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~p~ 161 (305)
+.+...|--.+++.+.-++.+.|+.|.
T Consensus 12 S~lLntgLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 12 SDLLNTGLDRETLSICIELCENGVNPE 38 (48)
T ss_pred HHHHcCCCCHHHHHHHHHHHHCCCCHH
Confidence 334445555666666666666666664
No 485
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.71 E-value=5.2e+02 Score=23.61 Aligned_cols=22 Identities=5% Similarity=-0.141 Sum_probs=15.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCC
Q 036263 241 NGFVGEALEYFNLMQKGVFKTD 262 (305)
Q Consensus 241 ~g~~~~a~~~~~~m~~~g~~p~ 262 (305)
.|+.+.++.++++|...|..|.
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 3667777777777777776653
No 486
>PRK12356 glutaminase; Reviewed
Probab=25.61 E-value=4.1e+02 Score=22.46 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=16.2
Q ss_pred CCCCCHhhHHHHHHhhcCCCC
Q 036263 75 GTNPSHITFVTLLSGCADFPS 95 (305)
Q Consensus 75 g~~p~~~~~~~ll~~~~~~~~ 95 (305)
|++|+...||+++..-...+.
T Consensus 93 G~EPSG~~FNsi~~Le~~~g~ 113 (319)
T PRK12356 93 GADPTGLPFNSVIAIELHGGK 113 (319)
T ss_pred CCCCCCCCcchHHHhhccCCC
Confidence 899999999999866444444
No 487
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=25.60 E-value=2.5e+02 Score=25.91 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=17.3
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEF 68 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~ 68 (305)
+..-|+ .+..+.-.|.++.|.+++
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL 171 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLL 171 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHH
Confidence 366776 677777788888888877
No 488
>PRK00971 glutaminase; Provisional
Probab=25.56 E-value=2.5e+02 Score=23.56 Aligned_cols=129 Identities=12% Similarity=0.028 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHH
Q 036263 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIV 236 (305)
Q Consensus 157 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 236 (305)
|.+|+...||+++..=...|.+ ..=|+..| ..+-+.++..-....+++...+.++++.......++..+
T Consensus 88 G~EPSG~~FNSi~~Le~~~g~P------~NPmINAG----AI~~~sll~g~~~~~~~~~il~~~~~~ag~~~i~~d~~v- 156 (307)
T PRK00971 88 GKEPSGDPFNSLVQLELEQGKP------RNPMINAG----AIVVTDLLQGRLSEEPCERLLEFVRQLAGNPDILYDEVV- 156 (307)
T ss_pred CCCCCCCCCcchhhhhccCCCC------CCccccHH----HHHHHHhhccCCcHHHHHHHHHHHHHHhCCCCCcccHHH-
Q ss_pred HHHhcCChHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCC
Q 036263 237 GFAVNGFVGEALEYFNLMQKGV-FKTD-EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSP 297 (305)
Q Consensus 237 ~~~~~g~~~~a~~~~~~m~~~g-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p 297 (305)
.-.....-+.=..+-.-|++.| +..| ..+.....+.|+-....++.-.+.-.+. ..|+.|
T Consensus 157 ~~SE~~t~~RN~Ala~~lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LA-n~G~~P 218 (307)
T PRK00971 157 ASSELEHADRNAAIAYLMKSFGNIENDVETVLDTYFHQCALEMSCVDLARAGLFLA-NGGVSP 218 (307)
T ss_pred HHHHhhccHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHH-cCCcCC
No 489
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=25.41 E-value=1.8e+02 Score=21.25 Aligned_cols=40 Identities=13% Similarity=0.012 Sum_probs=33.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHh
Q 036263 50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG 89 (305)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 89 (305)
.+|..+.+.+.+..+.++++.+.+.|+..+..|..-.+.-
T Consensus 5 ~~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~e 44 (146)
T TIGR01529 5 ERIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLRE 44 (146)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 4677888999999999999999999999998887665553
No 490
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=25.26 E-value=2.3e+02 Score=19.39 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHhccC
Q 036263 242 GFVGEALEYFNLMQ--KGVFKTDEVSFTGALTACSHAG 277 (305)
Q Consensus 242 g~~~~a~~~~~~m~--~~g~~p~~~~~~~li~~~~~~g 277 (305)
|+++.....+=++. ..+..+|...+...++++...|
T Consensus 61 Ge~~~i~~alLkq~~~~~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 61 GEYGDIYLALLKQRCVADGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred CchHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 55655555443332 4456677777777777766544
No 491
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=25.13 E-value=6.3e+02 Score=24.38 Aligned_cols=107 Identities=11% Similarity=-0.012 Sum_probs=55.2
Q ss_pred CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHhcc-------cCc
Q 036263 157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK--DNVRVCNTLMDVYSRFGCIEFARQVFQRMH-------KRT 227 (305)
Q Consensus 157 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~ 227 (305)
++..+..+...++... .|+..++..+++.+...... .+... =..+.+.+.+.+.. ..+
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------It~~~~~e~l~~~~~~ydk~gd~h 258 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------ITLAIAEESIQQRAVLYDKEGDAH 258 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------ccHHHHHHHHHHhhhhcccCCCCC
Confidence 4555566666666543 67777777777765432100 00000 01122333333211 112
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036263 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277 (305)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 277 (305)
....+.++++ ++.+|++.|..++.+|.+.|..|....-..++.+...-|
T Consensus 259 yd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 259 FDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 2222333333 446788888888888888887776555555554554444
No 492
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=25.10 E-value=2.1e+02 Score=18.87 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=17.9
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHH
Q 036263 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182 (305)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 182 (305)
|-+.|-.+.+.++++..+.. +-...|...|+.++...+.-..|+
T Consensus 42 y~r~gL~EqvyQ~L~~W~~~--eg~~Atv~~Lv~AL~~c~l~~lAe 85 (90)
T cd08780 42 YDREGLYEQAYQLLRRFIQS--EGKKATLQRLVQALEENGLTSLAE 85 (90)
T ss_pred cccccHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHccchHHHH
Confidence 33444444444444443331 111144444444444444433333
No 493
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=24.94 E-value=2e+02 Score=18.63 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=5.2
Q ss_pred CChHHHHHHHHhcc
Q 036263 211 GCIEFARQVFQRMH 224 (305)
Q Consensus 211 g~~~~a~~~~~~~~ 224 (305)
|+.+.|..+++.+.
T Consensus 46 G~~~aa~~Ll~~L~ 59 (84)
T cd08789 46 GNIKAAWTLLDTLV 59 (84)
T ss_pred ChHHHHHHHHHHHh
Confidence 33333333333333
No 494
>PF15469 Sec5: Exocyst complex component Sec5
Probab=24.85 E-value=3.1e+02 Score=20.70 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 036263 101 STALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQI 155 (305)
Q Consensus 101 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (305)
+..++..-.+...+..+..++++..-....-.-|.-+.+.|+++.+...|...+.
T Consensus 60 ~~pll~~~~k~~~l~~~l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 60 FKPLLERREKADKLRNALEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3444444445555566666666654434444566777788888888888876654
No 495
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=24.83 E-value=3.2e+02 Score=20.85 Aligned_cols=55 Identities=9% Similarity=0.028 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHhCCCCC---CHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChH
Q 036263 61 ILEAALEFTRMRLYGTNP---SHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMD 115 (305)
Q Consensus 61 ~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 115 (305)
..--.+|++.|.++|+.. ...-|..-+....+.+.|...+=..++.++.....-+
T Consensus 62 L~HFeqV~~im~~Rgi~l~~~~~~~Ya~~L~k~vR~~~p~~llD~Llv~alIEARScE 119 (180)
T cd07910 62 LQHFEQVLKIMKKRGIPLGPDSKDPYASGLRKLVRKGEPERLLDRLLVAALIEARSCE 119 (180)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcccCChHHHHHHHHHHHHHHHHhHH
Confidence 444557888899999633 3445888788777777665555555555555444333
No 496
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.33 E-value=4.1e+02 Score=21.99 Aligned_cols=150 Identities=13% Similarity=0.094 Sum_probs=87.7
Q ss_pred HHHHHHHcCCC---hHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHH
Q 036263 132 ALLNGFVKRDY---FEEALEYFRVMQISGV----EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204 (305)
Q Consensus 132 ~li~~~~~~g~---~~~a~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 204 (305)
.++...+ |+ .+.|.+.|+.....+. ..+......++....+.|..+.-..+++..... .+...-..++
T Consensus 134 ~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l 208 (324)
T PF11838_consen 134 LLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLL 208 (324)
T ss_dssp HHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHH
T ss_pred HHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHH
Confidence 3355545 44 5677888888776422 345666677788888888877766666655543 4677788899
Q ss_pred HHHHhcCChHHHHHHHHhcccCc---hhhHHHHHHHHHhcCCh--HHHHHHHHH----HHHCCCCCCHHHHHHHHHHHhc
Q 036263 205 DVYSRFGCIEFARQVFQRMHKRT---LVSWNSIIVGFAVNGFV--GEALEYFNL----MQKGVFKTDEVSFTGALTACSH 275 (305)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~--~~a~~~~~~----m~~~g~~p~~~~~~~li~~~~~ 275 (305)
.+++...+.+...++++.....+ ......++.++...+.. +.+.+++.. +.+. +.++......++..+..
T Consensus 209 ~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~ 287 (324)
T PF11838_consen 209 SALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAG 287 (324)
T ss_dssp HHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCT
T ss_pred HhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhc
Confidence 99999999888888888877642 23345555666544444 677776654 3322 33333355666665443
Q ss_pred ----cCcHHHHHHHHH
Q 036263 276 ----AGLIEDGLQYFD 287 (305)
Q Consensus 276 ----~g~~~~a~~~~~ 287 (305)
....++..++|+
T Consensus 288 ~~~t~~~~~~~~~f~~ 303 (324)
T PF11838_consen 288 NFSTEEQLDELEEFFE 303 (324)
T ss_dssp T--SHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHh
Confidence 344555555554
No 497
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=23.96 E-value=4.6e+02 Score=24.47 Aligned_cols=100 Identities=10% Similarity=-0.042 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220 (305)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 220 (305)
|+...|...+.........-.-.....|.+...+.|..-.|..++.+..... ...+-++..+.++|....++++|.+.|
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHH
Q ss_pred Hhccc---CchhhHHHHHHHHHhc
Q 036263 221 QRMHK---RTLVSWNSIIVGFAVN 241 (305)
Q Consensus 221 ~~~~~---~~~~~~~~li~~~~~~ 241 (305)
++..+ .+.+.-+.|...-|..
T Consensus 700 ~~a~~~~~~~~~~~~~l~~i~c~~ 723 (886)
T KOG4507|consen 700 RQALKLTTKCPECENSLKLIRCMQ 723 (886)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhh
No 498
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=23.90 E-value=4e+02 Score=21.64 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 260 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
.|.+.....++..|.+ +++++|.+++.++- +.|+.|..
T Consensus 236 ~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw-~lgysp~D 273 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK-RNIDEALKILAELW-KLGYSPED 273 (333)
T ss_pred CCChHHHHHHHHHHHh-ccHHHHHHHHHHHH-HcCCCHHH
Confidence 4788888888888866 68999999999988 88888754
No 499
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.68 E-value=2.7e+02 Score=19.71 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHH
Q 036263 179 GIGLWMHRYVPKQDFKDN-VRVCNTLMDVYSRFGCIEFARQVFQ 221 (305)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 221 (305)
++..++|..|.+.|+-.. +..|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 335667888877776554 4456666777777888888888776
No 500
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.67 E-value=7.2e+02 Score=25.00 Aligned_cols=23 Identities=17% Similarity=-0.032 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 036263 48 WTSSISRHCRSGCILEAALEFTR 70 (305)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~ 70 (305)
...+|.-..-.|++.+|+++.-+
T Consensus 490 ~d~~Is~alitgd~~~aV~~cl~ 512 (1049)
T KOG0307|consen 490 IDGLISEALITGDFKSAVELCLE 512 (1049)
T ss_pred HHHHHHHHHHhccHHHHHHHHHh
Confidence 55666666668899999887643
Done!