Query 036263
Match_columns 305
No_of_seqs 332 out of 1873
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 18:52:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 8E-35 2.7E-39 254.7 18.5 195 44-276 25-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.5E-34 5E-39 253.1 19.4 176 128-304 27-215 (501)
3 2xpi_A Anaphase-promoting comp 99.9 9.7E-24 3.3E-28 189.7 23.7 244 43-290 303-577 (597)
4 2xpi_A Anaphase-promoting comp 99.9 7.6E-23 2.6E-27 183.8 26.2 244 42-290 197-502 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.8 2E-17 7E-22 140.8 28.9 244 43-290 65-366 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.8 2.8E-17 9.5E-22 139.9 28.6 173 100-277 205-387 (388)
7 3spa_A Mtrpol, DNA-directed RN 99.8 6.1E-20 2.1E-24 166.7 11.4 118 159-276 124-249 (1134)
8 3spa_A Mtrpol, DNA-directed RN 99.8 6.2E-20 2.1E-24 166.6 8.1 146 127-277 127-286 (1134)
9 2y4t_A DNAJ homolog subfamily 99.8 7.2E-17 2.5E-21 139.8 26.1 242 44-290 25-322 (450)
10 2y4t_A DNAJ homolog subfamily 99.8 3.2E-16 1.1E-20 135.8 27.5 250 43-299 58-362 (450)
11 3hym_B Cell division cycle pro 99.7 1.4E-15 4.7E-20 126.0 24.8 249 43-298 20-302 (330)
12 4eqf_A PEX5-related protein; a 99.7 9.2E-16 3.1E-20 129.4 22.4 224 43-290 63-308 (365)
13 1fch_A Peroxisomal targeting s 99.7 3.5E-15 1.2E-19 125.7 21.4 242 44-287 63-354 (368)
14 3cv0_A Peroxisome targeting si 99.7 6.1E-15 2.1E-19 121.9 21.4 241 44-287 20-310 (327)
15 3ieg_A DNAJ homolog subfamily 99.7 2.6E-13 8.8E-18 113.4 28.0 247 44-298 36-338 (359)
16 1b89_A Protein (clathrin heavy 99.7 5.6E-16 1.9E-20 130.8 11.1 198 46-290 33-234 (449)
17 3mkr_A Coatomer subunit epsilo 99.7 9.8E-14 3.4E-18 113.4 24.2 218 41-283 61-285 (291)
18 3ieg_A DNAJ homolog subfamily 99.6 2.2E-13 7.6E-18 113.8 26.2 242 44-290 2-299 (359)
19 3uq3_A Heat shock protein STI1 99.6 1.2E-13 4.1E-18 110.2 22.8 217 44-291 4-235 (258)
20 2gw1_A Mitochondrial precursor 99.6 1.5E-13 5E-18 120.8 24.7 177 111-291 202-400 (514)
21 3mkr_A Coatomer subunit epsilo 99.6 8.9E-14 3E-18 113.6 19.4 214 46-290 35-262 (291)
22 2gw1_A Mitochondrial precursor 99.6 2E-13 6.8E-18 120.0 22.4 224 44-290 236-476 (514)
23 2ho1_A Type 4 fimbrial biogene 99.6 4.2E-13 1.4E-17 106.9 22.1 192 45-256 37-237 (252)
24 3hym_B Cell division cycle pro 99.6 7.4E-13 2.5E-17 109.5 24.4 234 44-280 55-322 (330)
25 2pl2_A Hypothetical conserved 99.6 2.1E-13 7.3E-18 106.5 19.3 190 97-290 4-212 (217)
26 2ho1_A Type 4 fimbrial biogene 99.6 4.5E-13 1.5E-17 106.7 21.5 191 98-290 37-236 (252)
27 1b89_A Protein (clathrin heavy 99.6 1.6E-15 5.6E-20 128.0 6.7 184 57-284 15-198 (449)
28 3fp2_A TPR repeat-containing p 99.6 2.7E-12 9.2E-17 113.5 27.7 160 129-292 245-407 (537)
29 2vq2_A PILW, putative fimbrial 99.6 9.2E-13 3.2E-17 102.7 22.0 192 98-290 8-209 (225)
30 2vq2_A PILW, putative fimbrial 99.6 1.2E-12 3.9E-17 102.1 22.5 205 43-269 6-221 (225)
31 1fch_A Peroxisomal targeting s 99.6 1.5E-13 5.1E-18 115.7 17.8 231 55-291 35-313 (368)
32 4eqf_A PEX5-related protein; a 99.6 3E-13 1E-17 113.9 18.8 192 97-290 64-274 (365)
33 2pl2_A Hypothetical conserved 99.6 4E-13 1.4E-17 104.9 17.8 190 43-255 3-212 (217)
34 2q7f_A YRRB protein; TPR, prot 99.5 2.5E-13 8.5E-18 107.4 16.0 192 96-290 21-220 (243)
35 3u4t_A TPR repeat-containing p 99.5 2E-12 6.9E-17 104.0 21.2 224 46-290 4-248 (272)
36 1ouv_A Conserved hypothetical 99.5 1.9E-11 6.5E-16 98.6 26.9 217 44-290 5-249 (273)
37 3fp2_A TPR repeat-containing p 99.5 2.1E-12 7.1E-17 114.2 22.2 222 46-290 244-489 (537)
38 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.5E-12 5.2E-17 104.8 19.6 216 44-286 42-269 (275)
39 2q7f_A YRRB protein; TPR, prot 99.5 9.5E-13 3.3E-17 104.0 17.9 196 41-257 19-222 (243)
40 2h6f_A Protein farnesyltransfe 99.5 2.3E-12 8E-17 109.0 21.1 229 44-299 96-352 (382)
41 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.7E-12 9.2E-17 103.4 18.5 221 57-298 17-247 (275)
42 3cv0_A Peroxisome targeting si 99.5 5.4E-12 1.8E-16 104.1 19.4 192 96-291 53-268 (327)
43 2ond_A Cleavage stimulation fa 99.4 2E-10 6.8E-15 94.5 26.3 233 44-292 7-270 (308)
44 3nf1_A KLC 1, kinesin light ch 99.4 2.9E-12 1E-16 104.9 14.9 232 44-290 26-305 (311)
45 3vtx_A MAMA; tetratricopeptide 99.4 2.8E-11 9.5E-16 91.6 18.9 157 130-290 8-168 (184)
46 3sf4_A G-protein-signaling mod 99.4 1.4E-11 4.7E-16 104.8 18.1 246 43-290 7-334 (406)
47 3vtx_A MAMA; tetratricopeptide 99.4 4.3E-11 1.5E-15 90.5 17.6 164 97-264 4-175 (184)
48 3ro2_A PINS homolog, G-protein 99.4 2E-11 6.8E-16 100.7 16.2 192 99-290 84-330 (338)
49 4a1s_A PINS, partner of inscut 99.4 1.7E-11 5.7E-16 104.8 16.0 244 45-290 48-370 (411)
50 3uq3_A Heat shock protein STI1 99.4 1.3E-10 4.4E-15 92.4 20.0 195 43-257 36-236 (258)
51 3u4t_A TPR repeat-containing p 99.4 1.7E-10 5.8E-15 92.7 20.4 197 100-298 5-214 (272)
52 1ouv_A Conserved hypothetical 99.4 6.9E-10 2.4E-14 89.4 23.6 185 97-290 5-213 (273)
53 4abn_A Tetratricopeptide repea 99.3 2.5E-11 8.4E-16 106.1 15.9 189 96-288 100-317 (474)
54 3as5_A MAMA; tetratricopeptide 99.3 1.5E-10 5.2E-15 87.0 17.5 158 130-290 11-171 (186)
55 3as5_A MAMA; tetratricopeptide 99.3 2.9E-10 9.9E-15 85.4 18.9 157 99-257 9-173 (186)
56 3ulq_A Response regulator aspa 99.3 3.5E-10 1.2E-14 95.8 20.2 224 51-291 109-367 (383)
57 3edt_B KLC 2, kinesin light ch 99.3 5.6E-11 1.9E-15 95.7 14.1 162 129-290 45-279 (283)
58 2ond_A Cleavage stimulation fa 99.3 1E-09 3.5E-14 90.2 21.8 195 43-257 48-270 (308)
59 1xi4_A Clathrin heavy chain; a 99.3 1.2E-09 4.2E-14 103.2 23.2 224 48-290 1052-1307(1630)
60 4gyw_A UDP-N-acetylglucosamine 99.2 3.6E-10 1.2E-14 103.0 18.1 155 99-256 10-173 (723)
61 2h6f_A Protein farnesyltransfe 99.2 9.8E-10 3.3E-14 92.9 18.7 187 98-289 97-302 (382)
62 4gyw_A UDP-N-acetylglucosamine 99.2 4.4E-10 1.5E-14 102.5 17.4 159 127-290 9-172 (723)
63 3q15_A PSP28, response regulat 99.2 1.3E-09 4.3E-14 92.3 19.3 222 52-290 108-363 (378)
64 4abn_A Tetratricopeptide repea 99.2 3.6E-10 1.2E-14 98.7 15.2 190 43-254 100-318 (474)
65 2xm6_A Protein corresponding t 99.2 5E-08 1.7E-12 85.4 28.8 187 98-294 219-433 (490)
66 4i17_A Hypothetical protein; T 99.2 2.5E-09 8.5E-14 83.7 18.4 182 98-290 7-207 (228)
67 2xm6_A Protein corresponding t 99.2 1E-07 3.5E-12 83.5 29.8 235 44-290 38-323 (490)
68 1xi4_A Clathrin heavy chain; a 99.2 1.5E-08 5.3E-13 95.9 25.2 227 42-290 984-1248(1630)
69 1hz4_A MALT regulatory protein 99.1 3.8E-08 1.3E-12 82.8 24.4 190 101-290 96-320 (373)
70 1qqe_A Vesicular transport pro 99.1 5.8E-09 2E-13 85.0 17.5 197 46-256 38-268 (292)
71 2fo7_A Synthetic consensus TPR 99.1 4.5E-09 1.6E-13 74.3 15.0 118 171-290 10-130 (136)
72 2fo7_A Synthetic consensus TPR 99.1 5E-09 1.7E-13 74.0 15.2 127 129-257 3-132 (136)
73 3edt_B KLC 2, kinesin light ch 99.1 1.9E-09 6.6E-14 86.6 14.4 187 56-256 12-280 (283)
74 4g1t_A Interferon-induced prot 99.1 2.2E-08 7.4E-13 87.0 21.9 244 44-290 50-399 (472)
75 4a1s_A PINS, partner of inscut 99.1 1.7E-09 6E-14 92.2 13.5 193 99-291 87-331 (411)
76 3nf1_A KLC 1, kinesin light ch 99.1 5.5E-09 1.9E-13 85.2 15.4 162 130-291 30-223 (311)
77 1qqe_A Vesicular transport pro 99.1 6E-09 2.1E-13 84.9 15.1 184 105-290 44-267 (292)
78 3ulq_A Response regulator aspa 99.0 1.2E-08 4E-13 86.4 17.2 199 44-256 142-367 (383)
79 2ooe_A Cleavage stimulation fa 99.0 6.3E-08 2.2E-12 85.7 22.1 193 97-292 271-492 (530)
80 4i17_A Hypothetical protein; T 99.0 2.4E-08 8.1E-13 78.0 17.1 169 128-299 8-213 (228)
81 3ro2_A PINS homolog, G-protein 99.0 5.7E-09 2E-13 85.8 13.8 231 45-290 5-290 (338)
82 3sf4_A G-protein-signaling mod 99.0 5.6E-09 1.9E-13 88.6 13.7 194 98-291 47-295 (406)
83 3mv2_B Coatomer subunit epsilo 99.0 5.4E-08 1.9E-12 78.8 17.7 160 97-264 99-287 (310)
84 3q15_A PSP28, response regulat 99.0 4.9E-08 1.7E-12 82.5 17.9 199 44-256 140-364 (378)
85 3qky_A Outer membrane assembly 99.0 3.6E-08 1.2E-12 78.7 15.8 159 98-257 15-224 (261)
86 2ooe_A Cleavage stimulation fa 98.9 1E-07 3.5E-12 84.3 20.0 193 44-257 271-492 (530)
87 4g1t_A Interferon-induced prot 98.9 5.7E-07 2E-11 78.0 23.4 148 112-264 227-406 (472)
88 3urz_A Uncharacterized protein 98.9 1E-07 3.6E-12 73.4 16.7 159 104-267 10-194 (208)
89 3qky_A Outer membrane assembly 98.9 2.3E-07 7.8E-12 74.0 17.9 161 129-291 17-223 (261)
90 2r5s_A Uncharacterized protein 98.9 8.2E-08 2.8E-12 71.9 14.4 149 103-254 11-170 (176)
91 3urz_A Uncharacterized protein 98.9 8.9E-08 3E-12 73.8 15.0 160 133-300 10-191 (208)
92 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.6E-07 8.9E-12 72.1 16.9 173 99-290 5-211 (225)
93 3u3w_A Transcriptional activat 98.8 2.7E-07 9.1E-12 75.1 17.5 160 132-291 80-265 (293)
94 2pzi_A Probable serine/threoni 98.8 3.4E-08 1.2E-12 90.1 13.2 164 109-278 402-583 (681)
95 3mv2_B Coatomer subunit epsilo 98.8 1.1E-06 3.9E-11 71.1 20.2 170 117-290 85-280 (310)
96 2vsy_A XCC0866; transferase, g 98.8 1.5E-07 5.1E-12 84.0 16.7 145 111-258 2-158 (568)
97 2pzi_A Probable serine/threoni 98.8 7.5E-08 2.6E-12 87.8 14.7 167 56-243 402-583 (681)
98 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.8E-07 9.6E-12 71.9 16.0 140 99-258 42-214 (225)
99 1hz4_A MALT regulatory protein 98.8 5.2E-07 1.8E-11 75.8 18.9 227 50-290 19-280 (373)
100 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.7E-07 1.3E-11 70.2 16.6 122 131-257 10-150 (213)
101 3e4b_A ALGK; tetratricopeptide 98.8 1.2E-05 4E-10 69.7 26.8 35 44-78 68-107 (452)
102 2ifu_A Gamma-SNAP; membrane fu 98.8 3.3E-07 1.1E-11 75.1 16.1 211 58-285 4-254 (307)
103 2r5s_A Uncharacterized protein 98.8 1.2E-07 4.1E-12 70.9 12.1 158 129-290 8-171 (176)
104 3rjv_A Putative SEL1 repeat pr 98.8 1.2E-06 4.2E-11 67.5 18.2 159 127-295 18-199 (212)
105 4ga2_A E3 SUMO-protein ligase 98.8 9.4E-08 3.2E-12 69.6 11.0 135 138-277 8-148 (150)
106 2qfc_A PLCR protein; TPR, HTH, 98.8 5.8E-07 2E-11 73.1 16.8 161 130-290 78-264 (293)
107 2vsy_A XCC0866; transferase, g 98.8 1.9E-07 6.4E-12 83.4 14.9 126 97-224 22-155 (568)
108 3qou_A Protein YBBN; thioredox 98.7 2.5E-07 8.4E-12 75.1 13.9 159 128-290 118-282 (287)
109 2ifu_A Gamma-SNAP; membrane fu 98.7 1.2E-07 4.1E-12 77.7 12.0 169 112-290 30-222 (307)
110 2qfc_A PLCR protein; TPR, HTH, 98.7 9.3E-07 3.2E-11 71.8 17.0 157 100-256 77-265 (293)
111 3qou_A Protein YBBN; thioredox 98.7 6.7E-07 2.3E-11 72.5 16.1 151 102-255 121-282 (287)
112 3u3w_A Transcriptional activat 98.7 2.1E-06 7.2E-11 69.7 18.1 154 101-254 78-263 (293)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.7 9.6E-07 3.3E-11 67.8 15.3 123 164-290 8-148 (213)
114 3gyz_A Chaperone protein IPGC; 98.7 1.4E-06 4.7E-11 63.4 15.2 104 158-264 31-138 (151)
115 4ga2_A E3 SUMO-protein ligase 98.7 8.8E-08 3E-12 69.7 8.7 136 105-243 4-149 (150)
116 1a17_A Serine/threonine protei 98.7 1.4E-06 4.7E-11 63.9 15.4 126 163-290 14-144 (166)
117 3dra_A Protein farnesyltransfe 98.7 1.7E-05 5.8E-10 64.6 22.8 215 55-290 43-285 (306)
118 3e4b_A ALGK; tetratricopeptide 98.7 2E-06 6.9E-11 74.5 18.2 152 129-290 178-349 (452)
119 4gco_A Protein STI-1; structur 98.6 1E-06 3.4E-11 62.0 12.6 98 158-256 8-109 (126)
120 3rjv_A Putative SEL1 repeat pr 98.6 3.4E-06 1.2E-10 65.0 16.5 158 98-259 18-199 (212)
121 1a17_A Serine/threonine protei 98.6 2.1E-06 7.1E-11 62.9 14.6 126 129-256 15-145 (166)
122 3gw4_A Uncharacterized protein 98.6 6.6E-07 2.2E-11 68.1 11.9 146 110-255 4-174 (203)
123 2c2l_A CHIP, carboxy terminus 98.6 1.5E-07 5.1E-12 76.2 8.6 186 98-290 4-197 (281)
124 1na0_A Designed protein CTPR3; 98.6 2.4E-06 8.4E-11 59.0 13.7 95 162-257 9-106 (125)
125 3gw4_A Uncharacterized protein 98.6 1E-06 3.5E-11 67.0 12.5 154 137-291 2-175 (203)
126 2e2e_A Formate-dependent nitri 98.6 6.7E-07 2.3E-11 66.7 10.8 118 138-257 21-144 (177)
127 4f3v_A ESX-1 secretion system 98.5 2E-06 7E-11 68.7 13.6 177 110-290 18-235 (282)
128 1na0_A Designed protein CTPR3; 98.5 4.6E-06 1.6E-10 57.6 13.9 95 129-225 11-105 (125)
129 2e2e_A Formate-dependent nitri 98.5 1.6E-06 5.3E-11 64.7 12.1 117 172-290 20-142 (177)
130 2vyi_A SGTA protein; chaperone 98.5 3E-06 1E-10 59.1 12.6 115 162-278 12-129 (131)
131 4e6h_A MRNA 3'-END-processing 98.5 1.4E-05 4.9E-10 72.3 19.5 206 46-274 344-585 (679)
132 2lni_A Stress-induced-phosphop 98.5 3.6E-06 1.2E-10 59.0 12.6 94 162-256 16-112 (133)
133 2lni_A Stress-induced-phosphop 98.5 8E-06 2.8E-10 57.2 14.0 112 129-242 18-132 (133)
134 2vyi_A SGTA protein; chaperone 98.5 6.8E-06 2.3E-10 57.2 13.5 114 129-244 14-130 (131)
135 3gyz_A Chaperone protein IPGC; 98.5 5.8E-06 2E-10 60.1 13.2 94 196-290 35-131 (151)
136 2vgx_A Chaperone SYCD; alterna 98.4 1.5E-06 5.2E-11 62.9 9.6 99 158-257 16-118 (148)
137 4gcn_A Protein STI-1; structur 98.4 6.7E-06 2.3E-10 57.8 12.7 101 164-267 10-120 (127)
138 1p5q_A FKBP52, FK506-binding p 98.4 6E-06 2E-10 68.5 14.1 128 127-255 147-292 (336)
139 4gco_A Protein STI-1; structur 98.4 8.1E-06 2.8E-10 57.3 12.7 94 130-225 16-109 (126)
140 4f3v_A ESX-1 secretion system 98.4 6.8E-06 2.3E-10 65.7 13.5 195 57-269 18-247 (282)
141 1p5q_A FKBP52, FK506-binding p 98.4 8.7E-06 3E-10 67.6 14.7 128 161-290 146-292 (336)
142 4b4t_Q 26S proteasome regulato 98.4 2.6E-05 9E-10 66.6 18.1 186 106-291 12-244 (434)
143 2fbn_A 70 kDa peptidylprolyl i 98.4 1.2E-06 3.9E-11 66.8 8.4 159 110-289 16-183 (198)
144 1elr_A TPR2A-domain of HOP; HO 98.4 6.1E-06 2.1E-10 57.5 11.5 107 163-272 5-121 (131)
145 3upv_A Heat shock protein STI1 98.4 1.2E-05 4E-10 56.1 12.8 92 164-256 6-100 (126)
146 2vgx_A Chaperone SYCD; alterna 98.4 1.8E-06 6.2E-11 62.5 8.6 94 129-224 23-116 (148)
147 2kck_A TPR repeat; tetratricop 98.4 7.1E-06 2.4E-10 55.5 11.0 93 197-290 6-104 (112)
148 4b4t_Q 26S proteasome regulato 98.3 2.8E-06 9.7E-11 72.7 10.8 198 52-256 11-244 (434)
149 4e6h_A MRNA 3'-END-processing 98.3 1.3E-05 4.6E-10 72.4 15.2 196 97-293 342-571 (679)
150 1elw_A TPR1-domain of HOP; HOP 98.3 3.7E-05 1.3E-09 52.3 13.8 92 164-256 6-100 (118)
151 3q49_B STIP1 homology and U bo 98.3 1.4E-05 4.8E-10 56.4 11.7 95 161-256 8-105 (137)
152 2xcb_A PCRH, regulatory protei 98.3 9.3E-06 3.2E-10 58.1 10.8 95 162-257 18-115 (142)
153 2fbn_A 70 kDa peptidylprolyl i 98.3 2.5E-06 8.4E-11 65.0 7.7 91 199-290 40-149 (198)
154 3sz7_A HSC70 cochaperone (SGT) 98.3 2.2E-05 7.4E-10 57.6 12.7 94 162-256 11-107 (164)
155 4gcn_A Protein STI-1; structur 98.2 5.8E-06 2E-10 58.1 8.6 101 197-300 8-117 (127)
156 1elw_A TPR1-domain of HOP; HOP 98.2 3.7E-05 1.3E-09 52.3 12.6 94 196-290 3-99 (118)
157 2kck_A TPR repeat; tetratricop 98.2 1.4E-05 4.7E-10 54.0 10.1 92 165-257 9-106 (112)
158 3upv_A Heat shock protein STI1 98.2 7.1E-05 2.4E-09 52.0 13.8 94 130-225 7-100 (126)
159 3q49_B STIP1 homology and U bo 98.2 5.7E-05 1.9E-09 53.2 12.9 97 194-291 6-105 (137)
160 2xcb_A PCRH, regulatory protei 98.2 3.4E-05 1.2E-09 55.1 11.7 95 129-225 20-114 (142)
161 3ro3_A PINS homolog, G-protein 98.2 2.2E-05 7.5E-10 56.8 10.8 127 164-290 11-156 (164)
162 3sz7_A HSC70 cochaperone (SGT) 98.2 6.4E-05 2.2E-09 55.1 13.3 97 195-292 9-108 (164)
163 3ro3_A PINS homolog, G-protein 98.2 1.5E-05 5E-10 57.7 9.7 127 130-256 12-157 (164)
164 3q7a_A Farnesyltransferase alp 98.2 0.00047 1.6E-08 56.9 19.3 222 47-290 56-329 (349)
165 2dba_A Smooth muscle cell asso 98.2 0.00012 4.2E-09 52.0 14.4 95 161-257 27-128 (148)
166 1elr_A TPR2A-domain of HOP; HO 98.1 3E-05 1E-09 53.8 10.0 96 129-225 6-107 (131)
167 1hxi_A PEX5, peroxisome target 98.1 6E-05 2.1E-09 52.3 11.3 90 200-290 20-112 (121)
168 2dba_A Smooth muscle cell asso 98.1 7.8E-05 2.7E-09 53.1 12.3 95 195-290 26-126 (148)
169 3n71_A Histone lysine methyltr 98.1 4.4E-05 1.5E-09 66.5 12.3 120 137-256 319-463 (490)
170 1wao_1 Serine/threonine protei 98.1 1.6E-05 5.6E-10 69.2 9.7 113 172-287 16-134 (477)
171 1hxi_A PEX5, peroxisome target 98.1 4.3E-05 1.5E-09 53.0 10.0 87 169-256 24-113 (121)
172 2c2l_A CHIP, carboxy terminus 98.0 1.8E-05 6.2E-10 63.8 8.9 94 129-225 6-100 (281)
173 1wao_1 Serine/threonine protei 98.0 3.6E-05 1.2E-09 67.0 11.4 112 138-252 17-134 (477)
174 3dra_A Protein farnesyltransfe 98.0 0.0033 1.1E-07 51.1 23.0 193 44-257 66-287 (306)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7.9E-05 2.7E-09 64.5 12.7 127 127-256 268-414 (457)
176 2xev_A YBGF; tetratricopeptide 98.0 0.00022 7.5E-09 49.5 12.5 85 172-257 12-105 (129)
177 2xev_A YBGF; tetratricopeptide 98.0 0.00012 4.2E-09 50.8 10.9 93 130-225 5-104 (129)
178 3k9i_A BH0479 protein; putativ 97.9 1.7E-05 6E-10 54.6 6.1 81 176-256 4-89 (117)
179 3rkv_A Putative peptidylprolyl 97.9 0.00012 4.1E-09 53.4 10.9 65 197-263 63-130 (162)
180 2if4_A ATFKBP42; FKBP-like, al 97.9 6.2E-05 2.1E-09 62.4 10.2 141 129-290 181-326 (338)
181 3k9i_A BH0479 protein; putativ 97.9 2.2E-05 7.6E-10 54.0 6.4 86 139-225 2-89 (117)
182 1ihg_A Cyclophilin 40; ppiase 97.9 0.00013 4.3E-09 61.4 12.1 87 196-284 272-362 (370)
183 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00021 7.1E-09 61.9 13.3 125 162-289 268-412 (457)
184 3n71_A Histone lysine methyltr 97.8 0.00012 4.2E-09 63.7 10.6 86 54-153 318-419 (490)
185 3dss_A Geranylgeranyl transfer 97.8 0.0056 1.9E-07 50.2 19.6 224 44-290 25-302 (331)
186 1ihg_A Cyclophilin 40; ppiase 97.8 0.00028 9.6E-09 59.2 12.1 120 129-249 225-362 (370)
187 2if4_A ATFKBP42; FKBP-like, al 97.8 0.0002 6.8E-09 59.4 10.7 113 162-290 179-291 (338)
188 3rkv_A Putative peptidylprolyl 97.8 0.00046 1.6E-08 50.2 11.6 95 130-225 14-125 (162)
189 2hr2_A Hypothetical protein; a 97.7 0.00042 1.4E-08 50.2 10.7 91 200-290 14-129 (159)
190 1klx_A Cysteine rich protein B 97.7 0.00059 2E-08 48.4 10.9 109 142-258 10-127 (138)
191 1klx_A Cysteine rich protein B 97.7 0.0025 8.7E-08 45.1 14.1 113 174-295 7-128 (138)
192 2hr2_A Hypothetical protein; a 97.7 0.00038 1.3E-08 50.4 9.6 59 130-190 14-85 (159)
193 3mkq_A Coatomer beta'-subunit; 97.6 0.0027 9.4E-08 58.7 17.0 47 108-154 662-708 (814)
194 2kat_A Uncharacterized protein 97.6 0.00052 1.8E-08 46.7 9.2 76 180-256 3-81 (115)
195 2l6j_A TPR repeat-containing p 97.6 8.1E-05 2.8E-09 50.2 5.0 60 197-256 4-66 (111)
196 2l6j_A TPR repeat-containing p 97.6 7.2E-05 2.5E-09 50.4 4.4 62 162-224 4-65 (111)
197 2uy1_A Cleavage stimulation fa 97.5 0.0034 1.1E-07 54.8 15.3 200 44-256 212-412 (493)
198 2uy1_A Cleavage stimulation fa 97.4 0.053 1.8E-06 47.3 21.8 48 43-90 45-95 (493)
199 2kat_A Uncharacterized protein 97.4 0.0013 4.5E-08 44.6 9.3 79 145-225 3-81 (115)
200 1zu2_A Mitochondrial import re 97.4 0.00032 1.1E-08 50.7 5.8 95 176-273 16-134 (158)
201 3mkq_A Coatomer beta'-subunit; 97.3 0.0039 1.3E-07 57.7 13.7 100 108-225 609-709 (814)
202 1na3_A Designed protein CTPR2; 97.3 0.0039 1.3E-07 39.9 9.9 57 166-223 13-69 (91)
203 3ma5_A Tetratricopeptide repea 97.3 0.0022 7.6E-08 42.4 8.7 61 162-223 7-67 (100)
204 1na3_A Designed protein CTPR2; 97.2 0.0034 1.2E-07 40.1 9.3 78 197-275 9-89 (91)
205 3ly7_A Transcriptional activat 97.2 0.0044 1.5E-07 51.3 11.5 71 227-302 276-346 (372)
206 3ma5_A Tetratricopeptide repea 97.2 0.0021 7E-08 42.6 8.0 63 194-256 4-69 (100)
207 3dss_A Geranylgeranyl transfer 97.1 0.051 1.8E-06 44.5 17.0 183 108-298 39-270 (331)
208 3q7a_A Farnesyltransferase alp 97.1 0.084 2.9E-06 43.5 21.6 193 44-257 87-331 (349)
209 3qwp_A SET and MYND domain-con 97.1 0.0033 1.1E-07 53.7 10.2 90 50-153 292-397 (429)
210 3qww_A SET and MYND domain-con 97.1 0.0028 9.6E-08 54.2 9.4 82 58-153 311-408 (433)
211 3qwp_A SET and MYND domain-con 97.0 0.003 1E-07 54.0 9.4 62 229-290 330-398 (429)
212 3qww_A SET and MYND domain-con 97.0 0.0022 7.7E-08 54.8 8.5 83 174-256 310-410 (433)
213 1dce_A Protein (RAB geranylger 97.0 0.052 1.8E-06 48.2 17.5 145 142-290 44-219 (567)
214 3mkq_B Coatomer subunit alpha; 97.0 0.063 2.2E-06 39.3 14.8 129 106-254 13-141 (177)
215 1dce_A Protein (RAB geranylger 96.9 0.089 3E-06 46.7 17.7 160 114-278 45-241 (567)
216 3ly7_A Transcriptional activat 96.8 0.1 3.5E-06 43.2 16.3 151 115-269 181-349 (372)
217 1zu2_A Mitochondrial import re 96.8 0.0046 1.6E-07 44.6 6.9 95 139-236 14-132 (158)
218 3mkq_B Coatomer subunit alpha; 96.4 0.12 4.2E-06 37.8 12.8 128 136-289 14-141 (177)
219 3lvg_A Clathrin heavy chain 1; 96.4 0.0057 1.9E-07 52.3 6.3 197 43-248 81-324 (624)
220 2kc7_A BFR218_protein; tetratr 96.2 0.018 6E-07 37.5 6.9 56 135-192 8-65 (99)
221 2kc7_A BFR218_protein; tetratr 96.2 0.006 2.1E-07 39.8 4.5 54 204-257 7-64 (99)
222 2v5f_A Prolyl 4-hydroxylase su 95.8 0.052 1.8E-06 36.0 7.8 67 195-263 3-79 (104)
223 1wy6_A Hypothetical protein ST 95.7 0.3 1E-05 34.0 12.9 66 229-296 92-157 (172)
224 3bee_A Putative YFRE protein; 95.6 0.11 3.8E-06 33.6 8.6 65 194-258 3-73 (93)
225 1wy6_A Hypothetical protein ST 95.6 0.36 1.2E-05 33.6 11.6 81 112-193 75-156 (172)
226 1pc2_A Mitochondria fission pr 95.6 0.055 1.9E-06 38.6 7.3 62 195-256 30-99 (152)
227 2v5f_A Prolyl 4-hydroxylase su 95.4 0.099 3.4E-06 34.6 8.1 64 161-224 4-73 (104)
228 3bee_A Putative YFRE protein; 95.1 0.16 5.5E-06 32.9 8.0 64 161-225 5-71 (93)
229 3u64_A Protein TP_0956; tetrat 95.0 0.13 4.5E-06 41.0 8.5 103 178-290 179-296 (301)
230 2ff4_A Probable regulatory pro 94.7 0.17 5.9E-06 42.5 9.1 54 201-254 175-231 (388)
231 2wpv_A GET4, UPF0363 protein Y 94.4 1.6 5.5E-05 35.2 20.3 139 108-255 43-215 (312)
232 1pc2_A Mitochondria fission pr 94.4 0.32 1.1E-05 34.7 8.6 81 143-225 14-99 (152)
233 4gns_B Protein CSD3, chitin bi 93.6 0.97 3.3E-05 41.3 12.1 123 165-289 251-397 (754)
234 2ff4_A Probable regulatory pro 93.3 0.92 3.2E-05 38.0 11.0 58 166-224 175-232 (388)
235 3lvg_A Clathrin heavy chain 1; 93.2 0.0012 4.1E-08 56.3 -6.7 144 96-248 52-219 (624)
236 3lpz_A GET4 (YOR164C homolog); 93.1 3 0.0001 34.0 20.7 140 108-256 45-215 (336)
237 4gns_B Protein CSD3, chitin bi 92.9 1.1 3.6E-05 41.1 11.3 51 204-254 344-397 (754)
238 4b4t_P 26S proteasome regulato 92.8 2.7 9.1E-05 36.0 13.3 163 130-292 59-247 (445)
239 3u64_A Protein TP_0956; tetrat 92.8 1.4 4.6E-05 35.2 10.4 87 115-203 180-283 (301)
240 1nzn_A CGI-135 protein, fissio 91.0 0.81 2.8E-05 31.4 6.4 86 175-263 14-107 (126)
241 1nzn_A CGI-135 protein, fissio 90.9 2.4 8.1E-05 29.0 8.7 82 142-225 16-102 (126)
242 4h7y_A Dual specificity protei 90.6 3.4 0.00012 29.3 9.9 48 176-224 74-121 (161)
243 1v54_E Cytochrome C oxidase po 90.1 1.8 6E-05 28.3 6.9 43 248-290 30-72 (109)
244 4fhn_B Nucleoporin NUP120; pro 89.2 6.1 0.00021 38.3 13.2 143 101-244 815-987 (1139)
245 1v54_E Cytochrome C oxidase po 87.2 4.5 0.00016 26.4 9.3 47 178-224 26-72 (109)
246 2y69_E Cytochrome C oxidase su 85.5 4.2 0.00015 28.1 6.9 31 226-256 86-116 (152)
247 4h7y_A Dual specificity protei 85.0 8.3 0.00028 27.4 10.4 109 161-271 12-136 (161)
248 4fhn_B Nucleoporin NUP120; pro 84.3 31 0.0011 33.4 15.5 152 103-256 847-1049(1139)
249 2uwj_G Type III export protein 84.3 6.5 0.00022 25.5 8.9 86 177-267 21-106 (115)
250 3ffl_A Anaphase-promoting comp 83.9 9.9 0.00034 27.4 9.6 26 199-224 124-149 (167)
251 2p58_C Putative type III secre 83.9 6.9 0.00024 25.5 9.6 87 176-267 21-107 (116)
252 2y69_E Cytochrome C oxidase su 83.0 9.5 0.00032 26.4 9.3 47 178-224 69-115 (152)
253 3o48_A Mitochondria fission 1 82.3 10 0.00034 26.2 8.2 68 194-263 37-111 (134)
254 2nsz_A Programmed cell death p 81.7 10 0.00035 25.9 8.3 66 200-265 10-80 (129)
255 4b4t_R RPN7, 26S proteasome re 81.6 7.2 0.00025 33.1 8.7 91 100-190 133-236 (429)
256 1zbp_A Hypothetical protein VP 81.1 6.9 0.00023 30.7 7.5 112 170-292 5-129 (273)
257 3ffl_A Anaphase-promoting comp 80.5 14 0.00047 26.6 9.9 121 156-289 12-148 (167)
258 4b4t_P 26S proteasome regulato 80.4 26 0.00089 29.8 18.8 228 44-287 55-319 (445)
259 4b4t_R RPN7, 26S proteasome re 80.0 11 0.00038 31.9 9.3 98 127-224 131-235 (429)
260 1y8m_A FIS1; mitochondria, unk 79.7 13 0.00045 26.0 8.5 68 194-263 36-110 (144)
261 2ion_A PDCD4, programmed cell 79.0 8.5 0.00029 27.3 7.0 62 200-261 12-78 (152)
262 3esl_A Checkpoint serine/threo 77.5 20 0.00068 26.7 8.9 53 143-195 95-148 (202)
263 3esl_A Checkpoint serine/threo 72.2 28 0.00095 25.9 9.7 52 210-261 92-148 (202)
264 2d2s_A Exocyst complex compone 71.6 23 0.00079 27.1 8.2 89 133-224 24-118 (235)
265 3txn_A 26S proteasome regulato 70.8 45 0.0016 27.8 19.6 165 46-223 20-207 (394)
266 1wdy_A 2-5A-dependent ribonucl 70.4 13 0.00046 28.6 7.0 19 50-68 7-25 (285)
267 3txn_A 26S proteasome regulato 67.6 54 0.0018 27.4 16.4 153 101-254 22-207 (394)
268 1k1a_A B-cell lymphoma 3-encod 67.6 16 0.00056 27.3 6.8 85 52-152 13-101 (241)
269 2r9g_A AAA ATPase, central reg 65.3 40 0.0014 25.1 9.1 69 131-200 15-91 (204)
270 4b4t_S RPN3, 26S proteasome re 63.1 42 0.0015 29.2 8.8 65 127-191 231-299 (523)
271 2nsz_A Programmed cell death p 63.1 17 0.0006 24.8 5.4 62 131-193 11-74 (129)
272 2wvi_A Mitotic checkpoint seri 62.5 26 0.00088 25.2 6.3 51 146-196 79-130 (164)
273 1zbp_A Hypothetical protein VP 62.1 21 0.00071 28.0 6.2 68 205-272 5-77 (273)
274 2fe3_A Peroxide operon regulat 60.3 34 0.0012 23.8 6.7 37 187-224 12-48 (145)
275 3bge_A Predicted ATPase; struc 59.8 47 0.0016 24.6 7.3 63 131-193 8-78 (201)
276 3hra_A Ankyrin repeat family p 59.5 34 0.0011 24.7 7.0 170 108-284 12-196 (201)
277 2wpv_A GET4, UPF0363 protein Y 59.3 68 0.0023 25.8 16.5 161 108-292 23-217 (312)
278 2uwj_G Type III export protein 59.3 34 0.0012 22.3 8.9 16 109-124 50-65 (115)
279 3lpz_A GET4 (YOR164C homolog); 59.1 72 0.0024 26.0 16.7 159 108-291 22-215 (336)
280 1wdy_A 2-5A-dependent ribonucl 58.5 28 0.00095 26.7 6.7 91 204-299 152-248 (285)
281 2rfa_A Transient receptor pote 58.1 49 0.0017 24.5 7.9 178 105-290 7-221 (232)
282 2ion_A PDCD4, programmed cell 57.8 23 0.0008 25.0 5.4 63 131-194 13-77 (152)
283 4aez_C MAD3, mitotic spindle c 57.8 59 0.002 24.6 8.6 47 215-261 132-183 (223)
284 2p58_C Putative type III secre 57.5 37 0.0013 22.1 9.0 78 140-225 20-97 (116)
285 1ug3_A EIF4GI, eukaryotic prot 57.4 66 0.0023 26.1 8.9 26 102-127 15-40 (339)
286 2wvi_A Mitotic checkpoint seri 56.9 51 0.0017 23.6 8.6 50 215-264 78-132 (164)
287 2fe3_A Peroxide operon regulat 56.0 48 0.0016 23.0 7.6 63 151-214 11-73 (145)
288 3ctd_A Putative ATPase, AAA fa 55.6 63 0.0021 24.2 7.8 68 130-197 35-110 (213)
289 1mzb_A Ferric uptake regulatio 55.3 47 0.0016 22.7 6.8 61 152-213 8-69 (136)
290 1qsa_A Protein (soluble lytic 55.2 1.2E+02 0.004 27.2 24.7 209 44-256 101-347 (618)
291 2xig_A Ferric uptake regulatio 55.0 51 0.0018 23.0 7.0 62 151-213 16-77 (150)
292 3l6a_A Eukaryotic translation 53.6 84 0.0029 25.9 8.9 25 164-188 14-38 (364)
293 4a1g_A Mitotic checkpoint seri 53.5 56 0.0019 23.0 8.8 50 247-297 84-134 (152)
294 1us7_B HSP90 CO-chaperone CDC3 53.1 30 0.001 27.0 5.6 26 101-126 42-67 (265)
295 2w57_A Ferric uptake regulatio 53.0 55 0.0019 22.8 7.5 63 151-214 6-69 (150)
296 2xig_A Ferric uptake regulatio 52.2 57 0.002 22.8 7.0 38 186-224 16-53 (150)
297 3ljn_A Hypothetical protein; a 52.0 54 0.0018 26.5 7.7 213 43-288 16-266 (364)
298 1k1a_A B-cell lymphoma 3-encod 51.2 31 0.0011 25.7 5.8 182 104-299 12-211 (241)
299 4ets_A Ferric uptake regulatio 51.0 46 0.0016 23.7 6.2 59 186-245 22-86 (162)
300 3eiq_C Programmed cell death p 50.5 1E+02 0.0036 25.3 10.8 192 101-295 57-284 (358)
301 2o03_A Probable zinc uptake re 50.4 32 0.0011 23.4 5.1 40 236-275 18-57 (131)
302 4ets_A Ferric uptake regulatio 49.9 61 0.0021 23.0 6.7 70 144-214 14-86 (162)
303 4aez_C MAD3, mitotic spindle c 49.5 48 0.0016 25.1 6.2 56 179-234 131-187 (223)
304 4gq2_M Nucleoporin NUP120; bet 49.5 1.8E+02 0.006 27.6 11.8 26 265-290 899-924 (950)
305 3eiq_C Programmed cell death p 49.1 1.1E+02 0.0038 25.1 16.2 92 199-290 219-319 (358)
306 2b7e_A PRE-mRNA processing pro 48.6 33 0.0011 19.7 4.0 30 61-90 2-31 (59)
307 2fu4_A Ferric uptake regulatio 48.5 43 0.0015 20.3 7.3 62 151-213 6-68 (83)
308 3ltm_A Alpha-REP4; protein eng 48.1 77 0.0026 23.1 16.4 109 160-276 93-201 (211)
309 3eyy_A Putative iron uptake re 47.6 48 0.0016 23.0 5.7 61 151-213 8-68 (145)
310 4a1g_A Mitotic checkpoint seri 47.1 73 0.0025 22.5 9.9 44 181-224 84-128 (152)
311 3eu9_A Huntingtin-interacting 46.9 33 0.0011 25.4 5.3 13 110-122 18-30 (240)
312 3mwm_A ZUR, putative metal upt 46.4 29 0.00098 24.0 4.4 22 203-224 19-40 (139)
313 1oai_A Nuclear RNA export fact 46.3 13 0.00043 21.5 2.1 23 241-263 33-56 (59)
314 3ltj_A Alpharep-4; protein eng 44.3 87 0.003 22.5 21.0 93 159-256 87-179 (201)
315 2o03_A Probable zinc uptake re 43.9 45 0.0015 22.6 5.0 45 48-92 13-57 (131)
316 3ygs_P Procaspase 9; apoptosis 43.2 49 0.0017 21.1 4.8 34 212-245 52-85 (97)
317 2qfz_A TBC1 domain family memb 43.0 1.3E+02 0.0044 24.4 8.5 42 183-224 230-271 (345)
318 1mzb_A Ferric uptake regulatio 42.8 41 0.0014 23.0 4.7 58 187-245 8-70 (136)
319 2p1h_A APAF-1, apoptotic prote 42.3 62 0.0021 20.3 7.1 33 211-243 50-82 (94)
320 3jxi_A Vanilloid receptor-rela 41.4 46 0.0016 25.2 5.4 31 51-81 8-38 (260)
321 3qye_A TBC1 domain family memb 40.3 1.4E+02 0.0049 23.9 10.5 135 130-271 152-302 (331)
322 3eyy_A Putative iron uptake re 39.9 68 0.0023 22.2 5.5 56 186-243 8-67 (145)
323 2keb_A DNA polymerase subunit 38.1 62 0.0021 20.8 4.4 33 245-277 26-58 (101)
324 3mwm_A ZUR, putative metal upt 37.1 70 0.0024 21.9 5.2 59 154-213 6-64 (139)
325 3b7b_A Euchromatic histone-lys 37.0 55 0.0019 24.3 5.1 169 107-290 50-234 (237)
326 3hra_A Ankyrin repeat family p 37.0 50 0.0017 23.7 4.8 159 134-300 9-174 (201)
327 3ygs_P Procaspase 9; apoptosis 36.6 82 0.0028 20.1 5.1 64 149-218 26-89 (97)
328 4gq2_M Nucleoporin NUP120; bet 35.9 1.8E+02 0.0062 27.5 9.3 126 104-242 816-950 (950)
329 3kea_A K1L; tropism, ANK repea 35.8 1E+02 0.0035 23.9 6.7 182 104-300 34-224 (285)
330 3aji_A 26S proteasome non-ATPa 35.7 75 0.0026 23.3 5.7 177 52-262 10-199 (231)
331 2f8y_A Notch homolog 1, transl 35.3 1.2E+02 0.0042 21.9 6.9 178 105-302 29-222 (223)
332 3o48_A Mitochondria fission 1 35.1 1.1E+02 0.0037 21.0 10.0 68 158-225 36-106 (134)
333 1wgl_A TOLL-interacting protei 34.8 66 0.0022 18.4 3.9 21 241-261 36-56 (59)
334 4g8k_A 2-5A-dependent ribonucl 34.7 1.1E+02 0.0039 24.1 7.0 105 182-299 219-329 (337)
335 2rg8_A Programmed cell death p 34.5 64 0.0022 23.0 4.7 24 131-154 14-37 (165)
336 3jxi_A Vanilloid receptor-rela 33.9 40 0.0014 25.6 3.9 92 133-225 8-118 (260)
337 1y8m_A FIS1; mitochondria, unk 33.8 1.2E+02 0.0041 21.1 10.1 67 159-225 36-105 (144)
338 2d2s_A Exocyst complex compone 33.7 1.6E+02 0.0054 22.5 9.2 90 167-256 23-119 (235)
339 2yru_A Steroid receptor RNA ac 33.2 84 0.0029 21.0 4.8 22 235-256 68-89 (118)
340 4g8k_A 2-5A-dependent ribonucl 32.9 1.1E+02 0.0039 24.1 6.7 146 105-263 172-329 (337)
341 2w57_A Ferric uptake regulatio 32.8 51 0.0017 23.0 3.9 57 187-244 7-68 (150)
342 2fu4_A Ferric uptake regulatio 32.7 60 0.002 19.6 3.9 35 243-277 32-66 (83)
343 3bu8_A Telomeric repeat-bindin 32.5 1.1E+02 0.0038 23.0 5.6 16 238-253 124-139 (235)
344 3twr_A Tankyrase-2; ankyrin re 32.1 63 0.0021 22.3 4.5 16 107-122 14-29 (165)
345 1ug3_A EIF4GI, eukaryotic prot 32.1 2E+02 0.0069 23.2 11.0 26 198-223 142-167 (339)
346 2zu6_B Programmed cell death p 31.9 2E+02 0.0067 23.0 11.0 188 101-290 6-229 (307)
347 3ltj_A Alpharep-4; protein eng 30.9 1.5E+02 0.005 21.2 17.7 137 96-240 57-195 (201)
348 2etb_A Transient receptor pote 30.5 30 0.001 26.3 2.6 26 134-159 6-31 (256)
349 2yru_A Steroid receptor RNA ac 30.2 69 0.0023 21.5 3.9 42 149-190 48-89 (118)
350 3bge_A Predicted ATPase; struc 29.5 1.1E+02 0.0036 22.7 5.1 21 241-261 20-40 (201)
351 2etb_A Transient receptor pote 28.9 74 0.0025 24.0 4.7 19 104-122 5-23 (256)
352 1bpo_A Protein (clathrin); cla 28.8 2.8E+02 0.0095 23.8 13.3 93 130-224 364-456 (494)
353 2qq8_A TBC1 domain family memb 28.3 1E+02 0.0035 24.9 5.6 42 183-224 214-255 (334)
354 3k1s_A PTS system, cellobiose- 28.2 47 0.0016 21.9 2.8 19 108-126 32-50 (109)
355 1bd8_A P19INK4D CDK4/6 inhibit 28.1 33 0.0011 23.5 2.3 19 105-123 6-24 (156)
356 2pnn_A Transient receptor pote 27.8 91 0.0031 23.8 5.1 91 133-224 16-125 (273)
357 2qx5_A Nucleoporin NIC96; mRNA 27.4 3.5E+02 0.012 24.4 17.7 44 46-91 154-197 (661)
358 3bqo_A Telomeric repeat-bindin 27.2 97 0.0033 23.0 4.5 19 134-152 124-142 (211)
359 3ltm_A Alpha-REP4; protein eng 27.1 1.8E+02 0.0061 21.0 20.3 80 195-278 93-172 (211)
360 3aji_A 26S proteasome non-ATPa 27.0 1E+02 0.0035 22.6 5.1 175 105-299 10-200 (231)
361 3eu9_A Huntingtin-interacting 27.0 1.2E+02 0.0043 22.1 5.7 169 108-290 49-234 (240)
362 3qil_A Clathrin heavy chain 1; 26.2 1.4E+02 0.0048 20.1 4.8 54 128-184 33-86 (125)
363 3lxu_X Tripeptidyl-peptidase 2 26.1 4.7E+02 0.016 26.0 10.1 83 213-299 1265-1351(1354)
364 2f6m_A Suppressor protein STP2 25.9 1.1E+02 0.0036 18.0 4.5 51 230-281 4-54 (65)
365 2r9g_A AAA ATPase, central reg 25.6 2.1E+02 0.0071 21.3 7.3 35 240-275 26-60 (204)
366 2dod_A Transcription elongatio 24.9 69 0.0024 19.8 3.0 22 278-299 15-36 (82)
367 4b4t_S RPN3, 26S proteasome re 24.6 3.5E+02 0.012 23.6 12.7 63 162-224 231-297 (523)
368 2crb_A Nuclear receptor bindin 23.8 1.5E+02 0.005 18.9 4.3 23 231-253 18-40 (97)
369 3f3f_C Nucleoporin NUP85; stru 23.5 2.5E+02 0.0086 24.7 7.2 54 227-282 515-568 (570)
370 2zu6_B Programmed cell death p 23.4 2.8E+02 0.0097 22.1 16.1 91 200-290 169-268 (307)
371 3qil_A Clathrin heavy chain 1; 23.0 98 0.0033 20.9 3.6 53 165-220 35-87 (125)
372 1uzc_A Hypothetical protein FL 22.5 90 0.0031 18.6 3.1 22 278-299 13-34 (71)
373 3hzj_A Rabgap1L, RAB GTPase-ac 22.4 2.4E+02 0.0081 22.3 6.6 42 183-224 175-216 (310)
374 1bpo_A Protein (clathrin); cla 22.3 3.7E+02 0.013 23.1 10.1 137 141-289 343-482 (494)
375 2dzn_A Probable 26S proteasome 22.1 1.8E+02 0.0062 21.1 5.7 19 52-70 6-24 (228)
376 3t8k_A Uncharacterized protein 21.8 2.2E+02 0.0076 20.3 7.2 53 109-161 14-69 (186)
377 3kea_A K1L; tropism, ANK repea 21.8 2.5E+02 0.0085 21.6 6.6 167 103-287 64-242 (285)
378 3ljn_A Hypothetical protein; a 21.8 2E+02 0.007 22.9 6.3 142 105-253 24-195 (364)
379 4e2i_2 DNA polymerase alpha su 21.7 1.5E+02 0.0051 18.2 5.7 58 247-304 5-64 (78)
380 2dzn_A Probable 26S proteasome 21.6 59 0.002 23.9 2.8 175 105-299 6-203 (228)
381 2ijq_A Hypothetical protein; s 21.5 2.2E+02 0.0077 20.2 8.5 47 210-256 45-103 (161)
382 3us6_A Histidine-containing ph 21.3 2.2E+02 0.0074 19.9 9.2 24 48-71 10-33 (153)
383 4fke_A Aminopeptidase N; zinc 20.9 5.3E+02 0.018 24.3 12.6 123 166-288 690-818 (909)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8e-35 Score=254.69 Aligned_cols=195 Identities=12% Similarity=0.089 Sum_probs=178.1
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV 123 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 123 (305)
+...++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++. +...++
T Consensus 25 pe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~------------------~~~~~~------ 80 (501)
T 4g26_A 25 PEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA------------------EAATES------ 80 (501)
T ss_dssp HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC------------------CCCSSS------
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC------------------Cchhhh------
Confidence 34568899999999999999999999999999999999998888875443 332211
Q ss_pred cCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHH
Q 036263 124 MRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203 (305)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 203 (305)
.+.+.++.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++
T Consensus 81 --------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 81 --------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp --------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred --------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 234557889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHhcc----cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036263 204 MDVYSRFGCIEFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276 (305)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 276 (305)
|.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.+++++|++.|+.|+..||+.++..|...
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999998 4899999999999999999999999999999999999999999999998764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.5e-34 Score=253.06 Aligned_cols=176 Identities=15% Similarity=0.127 Sum_probs=169.3
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC---------hhHHHHHHHHHhhcCCCCChh
Q 036263 128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT---------LGIGLWMHRYVPKQDFKDNVR 198 (305)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 198 (305)
.+++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35888999999999999999999999999999999999999999987664 678999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcc----cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036263 199 VCNTLMDVYSRFGCIEFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274 (305)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 274 (305)
+|+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999998 47999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCCcccccc
Q 036263 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGC 304 (305)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 304 (305)
+.|++++|.+++++|+ ..|..|+..||+.
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~ 215 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDM 215 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHH
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHH
Confidence 9999999999999999 9999999999975
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.92 E-value=9.7e-24 Score=189.65 Aligned_cols=244 Identities=9% Similarity=-0.020 Sum_probs=219.8
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLD 106 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~ 106 (305)
++..+|+.++..|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.++ .+..+++.++.
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 799999999999999999999999999999764 3367788888888877776 46788999999
Q ss_pred HHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHH
Q 036263 107 MYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG 181 (305)
Q Consensus 107 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 181 (305)
.|.+.|++++|.++|+++.. ..+|+.++..+.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998843 5579999999999999999999999998753 34788999999999999999999
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--------Cc--hhhHHHHHHHHHhcCChHHHHHHH
Q 036263 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--------RT--LVSWNSIIVGFAVNGFVGEALEYF 251 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~--~~~~~~li~~~~~~g~~~~a~~~~ 251 (305)
.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+ |+ ..+|..++.+|.+.|++++|.+++
T Consensus 461 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 461 NEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999875 56789999999999999999999999999853 44 679999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 252 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+++.+.+ +.+..+|..+..+|.+.|++++|.++|+++.
T Consensus 540 ~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 540 NQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9998865 3478999999999999999999999999998
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.92 E-value=7.6e-23 Score=183.82 Aligned_cols=244 Identities=9% Similarity=-0.067 Sum_probs=135.2
Q ss_pred CCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHH----------------------------------
Q 036263 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTL---------------------------------- 86 (305)
Q Consensus 42 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l---------------------------------- 86 (305)
.++..+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+..+
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 4478999999999999999999999999998753 43 2222222
Q ss_pred ----HHhhcCCCC---------------CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCC
Q 036263 87 ----LSGCADFPS---------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDY 142 (305)
Q Consensus 87 ----l~~~~~~~~---------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~ 142 (305)
+..+.+.++ ++..+++.++.+|.+.|++++|..+|+++.. ..+|+.++.++.+.|+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCC
Confidence 122222222 6778888888888888888888888888743 3445555555555555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR 222 (305)
Q Consensus 143 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (305)
+++|.++++++.+.. +.+..+++.+...|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|++
T Consensus 355 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 355 KNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555554321 2234445555555555555555555555544432 23344455555555555555555555544
Q ss_pred ccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 223 MHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 223 ~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|++++|.++|+++.
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 432 133444444444444444444444444444321 1233444444444444444444444444443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.82 E-value=2e-17 Score=140.76 Aligned_cols=244 Identities=11% Similarity=0.087 Sum_probs=147.4
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHhhcCCCC---------------CC-hhHHHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTLLSGCADFPS---------------NN-VMVSTALL 105 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~---------------~~-~~~~~~ll 105 (305)
.+..+|..+...+.+.|++++|++.|+++.+. .|+ ..+|..+..++...++ |+ ...+..+.
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 142 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 46678888888888888888888888888763 454 4456666666666555 33 33455666
Q ss_pred HHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcC-----------------------
Q 036263 106 DMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISG----------------------- 157 (305)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----------------------- 157 (305)
..+...|++++|...|+++.. ..+|..+...+.+.|++++|...|+++.+..
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 666667777777777766633 3446666666666666666666666665431
Q ss_pred ---------CCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--
Q 036263 158 ---------VEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-- 225 (305)
Q Consensus 158 ---------~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-- 225 (305)
+.| +..++..+...+...|++++|...++++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+
T Consensus 223 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 223 VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 122 23444555555555555555555555555543 33345555555555555666666555555542
Q ss_pred -CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 226 -RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 226 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+..+|..+...+...|++++|...++++.+.. +.+..++..+..++.+.|++++|...|+.+.
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 244556666666666666666666666655531 2234556666666666666666666666655
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.82 E-value=2.8e-17 Score=139.93 Aligned_cols=173 Identities=10% Similarity=0.031 Sum_probs=137.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhc
Q 036263 100 VSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCA 173 (305)
Q Consensus 100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~ 173 (305)
.+..+...+...|++++|...|++... ..++..+...+.+.|++++|.+.|+++.+. .| +..++..+...+.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH
Confidence 344444444444444444444444322 345788899999999999999999999875 44 5778999999999
Q ss_pred CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHH
Q 036263 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEY 250 (305)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~ 250 (305)
+.|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++.+ | +..++..+...|.+.|++++|...
T Consensus 283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999875 67889999999999999999999999999875 3 567899999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 036263 251 FNLMQKGVFKT-DEVSFTGALTACSHAG 277 (305)
Q Consensus 251 ~~~m~~~g~~p-~~~~~~~li~~~~~~g 277 (305)
|+++.+. .| +...|..+...+.+.|
T Consensus 362 ~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 362 YKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 9999884 45 4556666666555444
No 7
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=6.1e-20 Score=166.70 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHHHhcCcCChhHHHHHHHHHh---hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc----cCchhhH
Q 036263 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVP---KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH----KRTLVSW 231 (305)
Q Consensus 159 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~ 231 (305)
..-..||+++|++|++.|++++|.++|++|. +.|+.||..|||+||++||+.|++++|.++|++|. .||+.||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3346789999999999999999999998775 45889999999999999999999999999999998 4899999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036263 232 NSIIVGFAVNGFV-GEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276 (305)
Q Consensus 232 ~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 276 (305)
|++|.++++.|+. ++|.++|++|.+.|+.||..||+.++.++.+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999999985 78899999999999999999999998766554
No 8
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=6.2e-20 Score=166.62 Aligned_cols=146 Identities=10% Similarity=-0.021 Sum_probs=119.9
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHH
Q 036263 127 CDFWTALLNGFVKRDYFEEALEYFRVMQ---ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203 (305)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 203 (305)
..+||+||.+|++.|++++|.++|++|. ..|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4579999999999999999999998875 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-HHHHHHHHhcc----cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHH
Q 036263 204 MDVYSRFGCI-EFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD------EVSFTGALTA 272 (305)
Q Consensus 204 i~~~~~~g~~-~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~ 272 (305)
|+++|+.|+. ++|.++|++|. .||..+|+.++.++.+. .+++..+++ ..++.|+ ..+...|...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999984 78999999998 48999999998766654 444444444 3345554 4455555555
Q ss_pred HhccC
Q 036263 273 CSHAG 277 (305)
Q Consensus 273 ~~~~g 277 (305)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 55544
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.79 E-value=7.2e-17 Score=139.83 Aligned_cols=242 Identities=10% Similarity=0.001 Sum_probs=126.8
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLDM 107 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~~ 107 (305)
+...|..+...+.+.|++++|+.+|+++.+. .+.+..++..+..++...++ .+...+..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 5566677777777777777777777776653 23345566666666666655 334556666666
Q ss_pred HHhcCChHHHHHHHHhcCc-----c---ccHHHH------------HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 036263 108 YAKFGRMDLATVVFDVMRG-----C---DFWTAL------------LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~-----~---~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 167 (305)
+.+.|++++|...|+.+.. . ..+..+ ...+...|++++|...|+++.+.. +.+..++..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 6666666666666666533 1 233333 222555566666666666555431 224455555
Q ss_pred HHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHH----------
Q 036263 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSI---------- 234 (305)
Q Consensus 168 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l---------- 234 (305)
+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+ | +...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555443 33445555555555555555555555555432 1 12222222
Q ss_pred --HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 235 --IVGFAVNGFVGEALEYFNLMQKGVFKTD-----EVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 235 --i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
...|...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++.+.
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444445555555555444442 222 2234444444444444444444444443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.78 E-value=3.2e-16 Score=135.80 Aligned_cols=250 Identities=11% Similarity=0.029 Sum_probs=207.0
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC---------------CCh----hHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------------NNV----MVSTA 103 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------------~~~----~~~~~ 103 (305)
.+...|..+..++.+.|++++|+..|+++.+.+ +.+...+..+...+...++ |+. ..+..
T Consensus 58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 136 (450)
T 2y4t_A 58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 467888999999999999999999999988753 2346777777777877777 433 44444
Q ss_pred H------------HHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 036263 104 L------------LDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166 (305)
Q Consensus 104 l------------l~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 166 (305)
+ ...+.+.|++++|...|+.+.. ...+..+...+.+.|++++|...|+++.+.. +.+..++.
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 215 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY 215 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4 4448899999999999998854 5568899999999999999999999987752 34688999
Q ss_pred HHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHH------------HHHHHhcCChHHHHHHHHhccc--Cc-----
Q 036263 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL------------MDVYSRFGCIEFARQVFQRMHK--RT----- 227 (305)
Q Consensus 167 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~--~~----- 227 (305)
.+...+...|++++|...++.+.+.. +.+...+..+ ...|.+.|++++|...|+++.+ |+
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 294 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHH
Confidence 99999999999999999999998764 4455555555 8899999999999999999974 43
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
...|..+...+.+.|++++|...++++.+.. +.+..+|..+..+|...|++++|...++.+. .+.|+.
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~p~~ 362 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQ---EHNEND 362 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTSSSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCcch
Confidence 4578889999999999999999999988753 3367899999999999999999999999988 455553
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.4e-15 Score=126.01 Aligned_cols=249 Identities=11% Similarity=-0.005 Sum_probs=199.8
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLD 106 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~ 106 (305)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..+...+...++ .+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 456677788888888999999999999988752 2233444444455555555 45678888889
Q ss_pred HHHhcC-ChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhH
Q 036263 107 MYAKFG-RMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI 180 (305)
Q Consensus 107 ~~~~~g-~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 180 (305)
.+...| ++++|...|++... ...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 999999 89999999988754 5568889999999999999999999987753 2245667778888999999999
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-----------C-chhhHHHHHHHHHhcCChHHHH
Q 036263 181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----------R-TLVSWNSIIVGFAVNGFVGEAL 248 (305)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----------~-~~~~~~~li~~~~~~g~~~~a~ 248 (305)
|...++...+.. +.+...+..+...|...|++++|...+++..+ + +..+|..+...|...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999998875 56688899999999999999999999988763 2 3468889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCC
Q 036263 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ 298 (305)
Q Consensus 249 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 298 (305)
..+++..+.. +.+...+..+...+.+.|++++|.+.++... .+.|+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~ 302 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL---GLRRD 302 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT---TTCSC
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH---ccCCC
Confidence 9999988753 2356788888999999999999999999876 44554
No 12
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=9.2e-16 Score=129.36 Aligned_cols=224 Identities=13% Similarity=0.001 Sum_probs=137.8
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF 121 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 121 (305)
.+...|..+...+.+.|++++|++.|+++.+. .| +..+ +..+..++.+.|++++|...|
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------------------~~~lg~~~~~~g~~~~A~~~~ 122 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEA------------------WQFLGITQAENENEQAAIVAL 122 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHH------------------HHHHHHHHHHTTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHH------------------HHHHHHHHHHCCCHHHHHHHH
Confidence 45667889999999999999999999999874 33 3333 455555566666666666666
Q ss_pred HhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHhcCcCChhHHHHHH
Q 036263 122 DVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-----------YLTIISVLNVCANVRTLGIGLWMH 185 (305)
Q Consensus 122 ~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~~~~~~~~a~~~~ 185 (305)
+++.. ...|..+...+...|++++|...|+++.+. .|+ ...+..+...+...|++++|...+
T Consensus 123 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 123 QRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 66533 344666666666666666666666666543 222 122233455666666666666666
Q ss_pred HHHhhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036263 186 RYVPKQDFKD--NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260 (305)
Q Consensus 186 ~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 260 (305)
+++.+.. +. +..++..+...|...|++++|.+.|++..+ .+..+|..+..+|...|++++|...|++..+.. +
T Consensus 201 ~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 278 (365)
T 4eqf_A 201 LEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-P 278 (365)
T ss_dssp HHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 6666653 22 456666666666666666666666666552 245566666666666666666666666666532 2
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 261 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+..++..+..++.+.|++++|...|+...
T Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 279 GFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 235566666666666666666666666665
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=3.5e-15 Score=125.68 Aligned_cols=242 Identities=14% Similarity=-0.021 Sum_probs=128.4
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLDM 107 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~~ 107 (305)
+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+-..+...++ .+..++..+..+
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 141 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 141 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 56778889999999999999999999999852 2244455444444444444 233444445555
Q ss_pred HHhcCChHHHHHHHHhcCc-----cccHHH---------------HHHHHHcCCChHHHHHHHHHHHHcCCC-CCHHHHH
Q 036263 108 YAKFGRMDLATVVFDVMRG-----CDFWTA---------------LLNGFVKRDYFEEALEYFRVMQISGVE-PDYLTII 166 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~-----~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~ 166 (305)
+.+.|++++|...++++.. ...+.. .+..+...|++++|...|+++.+.... ++..++.
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 5555555555555544422 000100 122222445555555555554443211 0245555
Q ss_pred HHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCC
Q 036263 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGF 243 (305)
Q Consensus 167 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~ 243 (305)
.+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|...|+++.+ .+...+..+...|...|+
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 55555555555555555555555543 33445555555555555555555555555542 234455555555555555
Q ss_pred hHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHhccCcHHHHHHHHH
Q 036263 244 VGEALEYFNLMQKGVFKT----------DEVSFTGALTACSHAGLIEDGLQYFD 287 (305)
Q Consensus 244 ~~~a~~~~~~m~~~g~~p----------~~~~~~~li~~~~~~g~~~~a~~~~~ 287 (305)
+++|...|++..+..... ...+|..+..++...|++++|..+++
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 555555555554421000 13455555555555555555555543
No 14
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=6.1e-15 Score=121.91 Aligned_cols=241 Identities=10% Similarity=-0.079 Sum_probs=134.1
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLDM 107 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~~ 107 (305)
+...|-.....+...|++++|..+|+++.+.. +.+...+..+...+...++ .+...+..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 55567777788888999999999999887742 2234444444444444444 233445555555
Q ss_pred HHhcCChHHHHHHHHhcCc-----cccHHHH--------------HH-HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 036263 108 YAKFGRMDLATVVFDVMRG-----CDFWTAL--------------LN-GFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~-----~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 167 (305)
+.+.|++++|...++.+.. ...+..+ .. .+...|++++|...+++..+.. +.+..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 5555666665555555432 1112111 11 2444455556666555554432 224555555
Q ss_pred HHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCCh
Q 036263 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFV 244 (305)
Q Consensus 168 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 244 (305)
+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+ .+...|..+...|...|++
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 6666666666666666666665543 33455566666666666666666666665542 2345556666666666666
Q ss_pred HHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHhccCcHHHHHHHHH
Q 036263 245 GEALEYFNLMQKGVFKT-----------DEVSFTGALTACSHAGLIEDGLQYFD 287 (305)
Q Consensus 245 ~~a~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~ 287 (305)
++|.+.+++..+..... +..++..+..++.+.|++++|..+++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 66666666655432110 24555556666666666666666554
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.66 E-value=2.6e-13 Score=113.44 Aligned_cols=247 Identities=11% Similarity=0.014 Sum_probs=177.2
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHhhcCCCC---------------C---C-hhHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPS---------------N---N-VMVSTA 103 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~---------------~---~-~~~~~~ 103 (305)
+...|..+...+...|++++|+..|+++.+. .| +...+..+-..+...++ | + ...+..
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 4556777777777777777777777777664 23 34455555555545444 3 2 222322
Q ss_pred H------------HHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 036263 104 L------------LDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166 (305)
Q Consensus 104 l------------l~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 166 (305)
+ ...+...|++++|...++.+.. ...+..+...+...|++++|...+++..+.. +.+..++.
T Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 192 (359)
T 3ieg_A 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFY 192 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 2 4677888888888888887743 4557778888888888999888888877642 33677888
Q ss_pred HHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHH------------HHHHHHHhcCChHHHHHHHHhccc--Cc-h---
Q 036263 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN------------TLMDVYSRFGCIEFARQVFQRMHK--RT-L--- 228 (305)
Q Consensus 167 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~~~~--~~-~--- 228 (305)
.+...+...|++++|...++...+.. +.+...+. .+...+.+.|++++|...++++.+ |+ .
T Consensus 193 ~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 271 (359)
T 3ieg_A 193 KISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT 271 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH
Confidence 88888888889999988888887764 33344333 225668888999999998888763 32 2
Q ss_pred -hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCC
Q 036263 229 -VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ 298 (305)
Q Consensus 229 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 298 (305)
..+..+...+...|++++|...+++..+.. +.+..++..+...+.+.|++++|...|+... .+.|+
T Consensus 272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~---~~~p~ 338 (359)
T 3ieg_A 272 VRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ---EHNEN 338 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCC
Confidence 235557788889999999999999988752 3367888888889999999999999999887 45555
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.65 E-value=5.6e-16 Score=130.78 Aligned_cols=198 Identities=12% Similarity=0.146 Sum_probs=87.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR 125 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 125 (305)
.+|..+..++.+.|++++|++.|.+. +|..+|.. ++.++...|++++|+..++..+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~------------------V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYME------------------VVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHH------------------HHHHHHhCCCHHHHHHHHHHHH
Confidence 49999999999999999999999652 45555544 4445677888888888777765
Q ss_pred c----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHH
Q 036263 126 G----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201 (305)
Q Consensus 126 ~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 201 (305)
+ +.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+ ..|.
T Consensus 89 k~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 89 KKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 5 3568888889999999988887774 367778999999999999999999999876 3688
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036263 202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281 (305)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 281 (305)
.+..++.+.|++++|.+.++++. ++.+|..++.+|+..|+++.|...... +..++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHH
Confidence 89999999999999999998883 788899999999999999998554443 22334445568888889999999
Q ss_pred HHHHHHHHH
Q 036263 282 GLQYFDIMK 290 (305)
Q Consensus 282 a~~~~~~m~ 290 (305)
|..+++...
T Consensus 226 ai~lLe~aL 234 (449)
T 1b89_A 226 LITMLEAAL 234 (449)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 988888665
No 17
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=9.8e-14 Score=113.39 Aligned_cols=218 Identities=11% Similarity=0.012 Sum_probs=167.8
Q ss_pred CCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVV 120 (305)
Q Consensus 41 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 120 (305)
..|+..++..+...+...++.++|++.++++...+..|+...+ +..+..++.+.|++++|++.
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~-----------------~~~la~~~~~~g~~~~Al~~ 123 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTF-----------------LLMAASIYFYDQNPDAALRT 123 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHH-----------------HHHHHHHHHHTTCHHHHHHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHH-----------------HHHHHHHHHHCCCHHHHHHH
Confidence 4567888888999999999999999999999887766765444 34445568899999999999
Q ss_pred HHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHhcCcCChhHHHHHHHHHhhcCCCCCh
Q 036263 121 FDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI---ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197 (305)
Q Consensus 121 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 197 (305)
+++-.....+..++..+.+.|++++|.+.|+++.+. .|+.... ..++..+...|++++|..+|+++.+.. +.+.
T Consensus 124 l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~ 200 (291)
T 3mkr_A 124 LHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTL 200 (291)
T ss_dssp HTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCH
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcH
Confidence 999333667888899999999999999999999876 3553211 223344556689999999999998884 6788
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263 198 RVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGE-ALEYFNLMQKGVFKTDEVSFTGALTAC 273 (305)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~~~~~li~~~ 273 (305)
..++.+..++.+.|++++|...|++..+ | +..++..++..+...|+.++ +.++++++.+. .|+.... ....
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~---~d~~ 275 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFI---KEYR 275 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHH---HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHH---HHHH
Confidence 8999999999999999999999999773 3 67788899999999999876 57888988874 4654432 2333
Q ss_pred hccCcHHHHH
Q 036263 274 SHAGLIEDGL 283 (305)
Q Consensus 274 ~~~g~~~~a~ 283 (305)
.+.+.++++.
T Consensus 276 ~~~~~fd~~~ 285 (291)
T 3mkr_A 276 AKENDFDRLV 285 (291)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.64 E-value=2.2e-13 Score=113.84 Aligned_cols=242 Identities=10% Similarity=-0.008 Sum_probs=191.1
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC---------------C-ChhHHHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------------N-NVMVSTALLDM 107 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------------~-~~~~~~~ll~~ 107 (305)
|+..|..+...+...|++++|+..|+++.+.. +.+..++..+-..+...++ | +...+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45678888899999999999999999998752 2346667666666666666 3 56788889999
Q ss_pred HHhcCChHHHHHHHHhcCcc--------ccHHHH------------HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 036263 108 YAKFGRMDLATVVFDVMRGC--------DFWTAL------------LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS 167 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~~--------~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 167 (305)
+.+.|++++|...|+.+... ..+..+ ...+...|++++|...++++.+.. +.+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 99999999999999888441 223333 578888999999999999987753 346778888
Q ss_pred HHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHH------------
Q 036263 168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWN------------ 232 (305)
Q Consensus 168 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~------------ 232 (305)
+...+...|++++|...++...+.. +.+...+..+...|...|++++|...+++..+ | +...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998875 66788899999999999999999999998874 3 223222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTD-E----VSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 233 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+...+...|++++|...+++..+.. |+ . ..+..+..++.+.|++++|...++...
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 23666889999999999999988753 43 2 234456778889999999999999988
No 19
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.2e-13 Score=110.15 Aligned_cols=217 Identities=10% Similarity=0.003 Sum_probs=183.5
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV 123 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 123 (305)
....|..+...+...|++++|+..|++..+.. .+.. .+..+..++...|++++|...+++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~------------------~~~~~~~~~~~~~~~~~A~~~~~~ 63 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDIT------------------YLNNRAAAEYEKGEYETAISTLND 63 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTH------------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHH------------------HHHHHHHHHHHcccHHHHHHHHHH
Confidence 34678888999999999999999999998865 4433 345666778999999999999998
Q ss_pred cCc------------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc
Q 036263 124 MRG------------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191 (305)
Q Consensus 124 ~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 191 (305)
... ...|..+...+...|++++|...|++..+. .|+.. .+...|++++|...++.+.+.
T Consensus 64 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~~ 134 (258)
T 3uq3_A 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAYV 134 (258)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHHc
Confidence 754 356888999999999999999999998874 45533 355678899999999999886
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036263 192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268 (305)
Q Consensus 192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 268 (305)
. +.+...+..+...+...|++++|...+++..+ .+...|..+...|...|++++|...+++..+.. +.+...+..
T Consensus 135 ~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 212 (258)
T 3uq3_A 135 N-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIR 212 (258)
T ss_dssp C-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred C-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHH
Confidence 4 45677889999999999999999999999874 367889999999999999999999999998853 345788889
Q ss_pred HHHHHhccCcHHHHHHHHHHHHH
Q 036263 269 ALTACSHAGLIEDGLQYFDIMKK 291 (305)
Q Consensus 269 li~~~~~~g~~~~a~~~~~~m~~ 291 (305)
+..++.+.|++++|...++...+
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999998873
No 20
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.5e-13 Score=120.84 Aligned_cols=177 Identities=10% Similarity=-0.066 Sum_probs=142.6
Q ss_pred cCChHHHHHHHHhcCc-------------------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036263 111 FGRMDLATVVFDVMRG-------------------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV 171 (305)
Q Consensus 111 ~g~~~~a~~~~~~~~~-------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (305)
.|++++|...|+++.. ...+..+...+...|++++|...|++..+.. |+..++..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 7888888888877644 2346777888888899999999998887754 447778888888
Q ss_pred hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHH
Q 036263 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEAL 248 (305)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 248 (305)
+...|++++|...++.+.+.. +.+...+..+...|...|++++|...+++..+ .+...+..+...|...|++++|.
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 889999999999998888765 55677888888889999999999999888763 35678888888889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291 (305)
Q Consensus 249 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (305)
..++++.+.. +.+..++..+...+.+.|++++|...++.+.+
T Consensus 359 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 359 TLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999887753 23557788888888899999999999988873
No 21
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.61 E-value=8.9e-14 Score=113.64 Aligned_cols=214 Identities=12% Similarity=0.061 Sum_probs=167.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR 125 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 125 (305)
...-.+.++|...|++++|+..++.. -.| +...+..+...+.+.|+.++|.+.++++.
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~~----~~~------------------~~~a~~~la~~~~~~~~~~~A~~~l~~ll 92 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKPS----SAP------------------ELQAVRMFAEYLASHSRRDAIVAELDREM 92 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCTT----SCH------------------HHHHHHHHHHHHHCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhccc----CCh------------------hHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 34455678888888888888755431 122 22334566677889999999999999863
Q ss_pred c-------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChh
Q 036263 126 G-------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198 (305)
Q Consensus 126 ~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 198 (305)
. ...+..+...+...|++++|++.+++ ..+...+..+...+.+.|++++|.+.++.+.+.. |+..
T Consensus 93 ~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~ 164 (291)
T 3mkr_A 93 SRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDAT 164 (291)
T ss_dssp HSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred hcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcH
Confidence 2 33467777899999999999999987 4577889999999999999999999999998875 4432
Q ss_pred H---HHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036263 199 V---CNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272 (305)
Q Consensus 199 ~---~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 272 (305)
. ....+..+...|++++|..+|+++.+ .+...|+.+..++...|++++|...+++..+.. +-+..++..++..
T Consensus 165 ~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~ 243 (291)
T 3mkr_A 165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVL 243 (291)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 1 12344555566899999999999974 477889999999999999999999999988853 3367888899999
Q ss_pred HhccCcHHH-HHHHHHHHH
Q 036263 273 CSHAGLIED-GLQYFDIMK 290 (305)
Q Consensus 273 ~~~~g~~~~-a~~~~~~m~ 290 (305)
+...|+.++ +.++++.+.
T Consensus 244 ~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 244 SQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHTTCCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHH
Confidence 999999876 678888877
No 22
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2e-13 Score=119.96 Aligned_cols=224 Identities=8% Similarity=-0.050 Sum_probs=189.8
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV 123 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 123 (305)
+...|..+...+...|++++|...|+++.+. .|+.. .+..+..++...|++++|...++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--FPRVN------------------SYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--CCCHH------------------HHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CccHH------------------HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4667888899999999999999999999875 34422 245566778899999999999988
Q ss_pred cCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChh
Q 036263 124 MRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198 (305)
Q Consensus 124 ~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 198 (305)
+.. ...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+..
T Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 373 (514)
T 2gw1_A 296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPE 373 (514)
T ss_dssp HHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSH
T ss_pred HhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHH
Confidence 754 5568889999999999999999999988753 2256788899999999999999999999998875 55678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccc--C-c------hhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHH
Q 036263 199 VCNTLMDVYSRFGCIEFARQVFQRMHK--R-T------LVSWNSIIVGFAV---NGFVGEALEYFNLMQKGVFKTDEVSF 266 (305)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~------~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~ 266 (305)
.+..+...|.+.|++++|...++++.+ | + ...|..+...+.. .|++++|...+++..+.. +.+..++
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 452 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 899999999999999999999998873 2 2 3388999999999 999999999999988853 3367788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHH
Q 036263 267 TGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 267 ~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
..+...+.+.|++++|...|+...
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 899999999999999999999888
No 23
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=4.2e-13 Score=106.86 Aligned_cols=192 Identities=12% Similarity=0.002 Sum_probs=114.0
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM 124 (305)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 124 (305)
...|..+...+...|++++|.+.|+++.+. .|+ +...+..+...+.+.|++++|...++++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPS-----------------SADAHAALAVVFQTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCC-----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 577888888999999999999999988764 232 1223445555566777777777777665
Q ss_pred Cc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChh
Q 036263 125 RG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198 (305)
Q Consensus 125 ~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 198 (305)
.. ...+..+...+...|++++|.+++++..+.+..| +...+..+...+...|++++|...+++..+.. +.+..
T Consensus 98 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 176 (252)
T 2ho1_A 98 LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPS 176 (252)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHH
T ss_pred HHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHH
Confidence 32 3345555566666666666666666655422233 34445555555556666666666666555543 33455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 199 VCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
.+..+...|...|++++|...++++.+ .+...+..+...+...|++++|.++++++.+
T Consensus 177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 177 VALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555555666665555555542 2334455555555555555555555555554
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.60 E-value=7.4e-13 Score=109.46 Aligned_cols=234 Identities=11% Similarity=-0.073 Sum_probs=189.7
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCC-C----------------CChhHHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP-S----------------NNVMVSTALLD 106 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~----------------~~~~~~~~ll~ 106 (305)
+...+..+...+...|++++|...++++.+.. +.+...+..+-..+...+ + .+...+..+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 133 (330)
T 3hym_B 55 HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 133 (330)
T ss_dssp CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHH
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 45566777788889999999999999988742 234566666666666666 4 45678899999
Q ss_pred HHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHH
Q 036263 107 MYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG 181 (305)
Q Consensus 107 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 181 (305)
.+...|++++|...|+++.. ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 134 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 134 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHH
Confidence 99999999999999998854 4567789999999999999999999987753 33678899999999999999999
Q ss_pred HHHHHHHhhcC--------CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHH
Q 036263 182 LWMHRYVPKQD--------FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEY 250 (305)
Q Consensus 182 ~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 250 (305)
...+++..+.. .+....++..+..+|.+.|++++|...+++..+ .+...|..+...|...|++++|.+.
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHH
Confidence 99999987642 134467899999999999999999999999874 3678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHH-hccCcHH
Q 036263 251 FNLMQKGVFKTDEVSFTGALTAC-SHAGLIE 280 (305)
Q Consensus 251 ~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~ 280 (305)
+++..+.. +.+...+..+..++ ...|+.+
T Consensus 293 ~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 293 FHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99988743 23667777777777 4556554
No 25
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=2.1e-13 Score=106.49 Aligned_cols=190 Identities=14% Similarity=0.031 Sum_probs=152.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 036263 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLN 170 (305)
Q Consensus 97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~ 170 (305)
+...+..+...+.+.|++++|...|++... ...|..+...+.+.|++++|...+++..+. .| +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 445667788889999999999999998854 556888999999999999999999998875 45 5778888888
Q ss_pred HhcCc-----------CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--CchhhHHHHHHH
Q 036263 171 VCANV-----------RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVG 237 (305)
Q Consensus 171 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~ 237 (305)
.+... |++++|...+++..+.. +-+...+..+..+|...|++++|...|++..+ .+...+..+..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 99999 99999999999999875 55688899999999999999999999998764 567788999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 238 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
|...|++++|...|++..+.. +-+...+..+...+.+.|++++|+..++...
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999998853 3366788889999999999999999998765
No 26
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=4.5e-13 Score=106.71 Aligned_cols=191 Identities=14% Similarity=-0.017 Sum_probs=165.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036263 98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC 172 (305)
Q Consensus 98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (305)
...+..+...+...|++++|...|+++.. ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45567778889999999999999998754 4568889999999999999999999988753 33678888999999
Q ss_pred cCcCChhHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHH
Q 036263 173 ANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEAL 248 (305)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 248 (305)
...|++++|...++.+.+.+..| +...+..+...|...|++++|...+++..+ .+...+..+...|...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998833334 577888999999999999999999999874 35788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 249 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
..+++..+.. +.+...+..+...+.+.|++++|.++++.+.
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999988753 3567788888899999999999999999998
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.58 E-value=1.6e-15 Score=127.95 Aligned_cols=184 Identities=11% Similarity=0.038 Sum_probs=67.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCccccHHHHHHH
Q 036263 57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNG 136 (305)
Q Consensus 57 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~ 136 (305)
+.|++++|.++++++.. | .+|..|..++.+.|++++|++.|.+.++...|..++.+
T Consensus 15 ~~~~ld~A~~fae~~~~----~--------------------~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ 70 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE----P--------------------AVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQA 70 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC----h--------------------HHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 56779999999988732 1 24567777799999999999999999888899999999
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 036263 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216 (305)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 216 (305)
+...|++++|..+++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|
T Consensus 71 ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA 141 (449)
T 1b89_A 71 ANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAA 141 (449)
T ss_dssp ----------------------------------------CHHHHTTTTT-------CC----------------CTTTH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999988776663 5567889999999999999999998874 36778999999999999999999
Q ss_pred HHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 036263 217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ 284 (305)
Q Consensus 217 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 284 (305)
...|..+ ..|..+..++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|..
T Consensus 142 ~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~ 198 (449)
T 1b89_A 142 KLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM 198 (449)
T ss_dssp HHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHH
Confidence 9999988 48999999999999999999999998 378999999999999999999864
No 28
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.58 E-value=2.7e-12 Score=113.51 Aligned_cols=160 Identities=11% Similarity=0.012 Sum_probs=139.0
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (305)
++..+...+...|++++|...+++..+. .|+..++..+...+...|++++|...++.+.+.. +.+..++..+...|.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 3566667788899999999999998875 5668888999999999999999999999998875 567888999999999
Q ss_pred hcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036263 209 RFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 285 (305)
..|++++|...+++..+ .+...|..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999874 356789999999999999999999999998863 33567888899999999999999999
Q ss_pred HHHHHHH
Q 036263 286 FDIMKKI 292 (305)
Q Consensus 286 ~~~m~~~ 292 (305)
++.+.+.
T Consensus 401 ~~~a~~~ 407 (537)
T 3fp2_A 401 YDIAKRL 407 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9998743
No 29
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=9.2e-13 Score=102.68 Aligned_cols=192 Identities=11% Similarity=-0.024 Sum_probs=163.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036263 98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC 172 (305)
Q Consensus 98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 172 (305)
...+..+...+...|++++|...|+.+.. ...|..+...+...|++++|...+++..+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34567778889999999999999998754 4568889999999999999999999987753 33677889999999
Q ss_pred cCc-CChhHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHH
Q 036263 173 ANV-RTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEA 247 (305)
Q Consensus 173 ~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 247 (305)
... |++++|...++.+.+.+..| +...+..+..++...|++++|...++++.+ .+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 999 99999999999998833333 367889999999999999999999999874 3577889999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 248 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
...+++..+.....+...+..+...+...|+.+.+..+++.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999998875321467778888888899999999999999987
No 30
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=1.2e-12 Score=102.13 Aligned_cols=205 Identities=13% Similarity=0.009 Sum_probs=169.3
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD 122 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 122 (305)
.+...|..+...+...|++++|.+.|+++.+. .|+ +...+..+...+...|++++|...++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~ 66 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPK-----------------NELAWLVRAEIYQYLKVNDKAQESFR 66 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--Ccc-----------------chHHHHHHHHHHHHcCChHHHHHHHH
Confidence 35678889999999999999999999998874 333 12345666777899999999999999
Q ss_pred hcCc-----cccHHHHHHHHHcC-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263 123 VMRG-----CDFWTALLNGFVKR-DYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195 (305)
Q Consensus 123 ~~~~-----~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (305)
++.. ..++..+...+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.
T Consensus 67 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 145 (225)
T 2vq2_A 67 QALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQ 145 (225)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 8844 45688899999999 999999999999987433443 6778889999999999999999999998875 55
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhccc----CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036263 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK----RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA 269 (305)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 269 (305)
+...+..+...|.+.|++++|...+++..+ .+...+..+...+...|+.+.|..+++.+.+. .|+......+
T Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~ 221 (225)
T 2vq2_A 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTV 221 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 688899999999999999999999998863 46677888888899999999999999998864 3555444333
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.57 E-value=1.5e-13 Score=115.67 Aligned_cols=231 Identities=13% Similarity=-0.000 Sum_probs=160.0
Q ss_pred HHhcCChhHHHH-HHHHHHhCCCCC-----CHhhHHHHHHhhcCCCC----------------CChhHHHHHHHHHHhcC
Q 036263 55 HCRSGCILEAAL-EFTRMRLYGTNP-----SHITFVTLLSGCADFPS----------------NNVMVSTALLDMYAKFG 112 (305)
Q Consensus 55 ~~~~~~~~~a~~-~~~~m~~~g~~p-----~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~~~~~~g 112 (305)
+...|++++|++ .|++.... .| +...+..+-..+...++ .+...+..+..++.+.|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQF--EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -----------CHHHHCCCCC--CSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhhhHHHhc--CCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 334578888887 77765542 22 23344445555555555 44556777777777777
Q ss_pred ChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHH---------------HHHH
Q 036263 113 RMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY-LTIIS---------------VLNV 171 (305)
Q Consensus 113 ~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~---------------ll~~ 171 (305)
++++|...|+++.. ..++..+...+...|++++|...++++.+.. |+. ..+.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 77777777776643 4457777777777788888887777776642 221 11110 1223
Q ss_pred hcCcCChhHHHHHHHHHhhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHH
Q 036263 172 CANVRTLGIGLWMHRYVPKQDFKD--NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGE 246 (305)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 246 (305)
+...|++++|...++.+.+.. +. +..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 336777788888888777764 22 578899999999999999999999999874 356789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291 (305)
Q Consensus 247 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (305)
|...++++.+.. +.+...+..+..++.+.|++++|...|+...+
T Consensus 270 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 270 AVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999988853 34678899999999999999999999998873
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.56 E-value=3e-13 Score=113.89 Aligned_cols=192 Identities=9% Similarity=-0.004 Sum_probs=156.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036263 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV 171 (305)
Q Consensus 97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (305)
+...+..+...+.+.|++++|...|+++.. ..+|..+...+...|++++|...|++..+.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 445577888889999999999999999854 5679999999999999999999999988753 3358889999999
Q ss_pred hcCcCChhHHHHHHHHHhhcCCC---------CChhHHHHHHHHHHhcCChHHHHHHHHhccc--C---chhhHHHHHHH
Q 036263 172 CANVRTLGIGLWMHRYVPKQDFK---------DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R---TLVSWNSIIVG 237 (305)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~li~~ 237 (305)
+...|++++|...++++.+.... .....+..+...+.+.|++++|...|+++.+ | +..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999999875310 1244567888999999999999999999974 3 57889999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 238 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
|...|++++|.+.|++..+.. +.+..++..+..++.+.|++++|+..|+...
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999998853 3467899999999999999999999999988
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=4e-13 Score=104.92 Aligned_cols=190 Identities=15% Similarity=0.058 Sum_probs=151.0
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD 122 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 122 (305)
++...|..+-..+.+.|++++|+..|++..+ ..|+ +...+..+..++.+.|++++|...|+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~ 63 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQ-----------------DPEALYWLARTQLKLGLVNPALENGK 63 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5677888889999999999999999999987 4554 23445667777899999999999999
Q ss_pred hcCc-----cccHHHHHHHHHcC-----------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHH
Q 036263 123 VMRG-----CDFWTALLNGFVKR-----------DYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMH 185 (305)
Q Consensus 123 ~~~~-----~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~ 185 (305)
+... ...+..+...+... |++++|...|++..+. .| +...+..+-..+...|++++|...+
T Consensus 64 ~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 141 (217)
T 2pl2_A 64 TLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASL 141 (217)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHH
Confidence 8854 45688888999999 9999999999998875 55 5778888999999999999999999
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036263 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255 (305)
Q Consensus 186 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 255 (305)
++..+.. .+...+..+..+|...|++++|...|++..+ | +...+..+...+...|++++|...+++..
T Consensus 142 ~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 142 KQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999987 7888999999999999999999999999874 3 66788899999999999999999988754
No 34
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=2.5e-13 Score=107.41 Aligned_cols=192 Identities=15% Similarity=0.076 Sum_probs=150.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036263 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN 170 (305)
Q Consensus 96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 170 (305)
.....+..+...+.+.|++++|...|+++.. ...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455667777788899999999999998844 4568888899999999999999999987753 336788889999
Q ss_pred HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHH
Q 036263 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEA 247 (305)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 247 (305)
.+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+ .+...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998875 56788899999999999999999999999874 3677889999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 248 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
...+++..+.. +.+..++..+..++.+.|++++|...++.+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999988763 3467889999999999999999999999988
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=2e-12 Score=104.04 Aligned_cols=224 Identities=8% Similarity=-0.062 Sum_probs=178.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR 125 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 125 (305)
..+......+...|++++|+..|++..+. .|+. ...+..+..++.+.|++++|...+++..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~-----------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 64 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNS-----------------PYIYNRRAVCYYELAKYDLAQKDIETYF 64 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCC-----------------STTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCc-----------------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34556677888999999999999999874 3432 2234566667899999999999999885
Q ss_pred c----cc----cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCCh
Q 036263 126 G----CD----FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV 197 (305)
Q Consensus 126 ~----~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 197 (305)
. .. .|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+.
T Consensus 65 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~ 142 (272)
T 3u4t_A 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDP 142 (272)
T ss_dssp TTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCH
T ss_pred hccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcH
Confidence 4 22 27889999999999999999999988753 2356789999999999999999999999998874 5567
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HH
Q 036263 198 RVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGF---VGEALEYFNLMQKGV-FKTD------EV 264 (305)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~------~~ 264 (305)
..+..+...+...+++++|.+.|++..+ | +...+..+...+...|+ +++|...+++..+.. -.|+ ..
T Consensus 143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 222 (272)
T 3u4t_A 143 KVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE 222 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 7788877344445699999999999874 3 46777788888888888 888999998876642 1233 25
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 265 SFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+|..+...+.+.|++++|.+.++...
T Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~al 248 (272)
T 3u4t_A 223 ANEYIAYYYTINRDKVKADAAWKNIL 248 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77788889999999999999999988
No 36
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=1.9e-11 Score=98.62 Aligned_cols=217 Identities=9% Similarity=-0.034 Sum_probs=183.4
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHh----cCChHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAK----FGRMDLATV 119 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~ 119 (305)
+..++..+-..+...|++++|++.|++..+.+ + ...+..+...+.. .+++++|..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~------------------~~a~~~lg~~~~~g~~~~~~~~~A~~ 63 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---E------------------NSGCFNLGVLYYQGQGVEKNLKKAAS 63 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---C------------------HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---C------------------HHHHHHHHHHHHcCCCcCCCHHHHHH
Confidence 56678888889999999999999999998722 1 1233556666788 999999999
Q ss_pred HHHhcCc---cccHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC----cCChhHHHHHHHHH
Q 036263 120 VFDVMRG---CDFWTALLNGFVK----RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN----VRTLGIGLWMHRYV 188 (305)
Q Consensus 120 ~~~~~~~---~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~ 188 (305)
.|++..+ ...+..+...+.. .+++++|...|++..+.+ +...+..+-..|.. .+++++|...+++.
T Consensus 64 ~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 140 (273)
T 1ouv_A 64 FYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA 140 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 9998755 5567888889999 999999999999988765 66778888888888 99999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhccc-CchhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 036263 189 PKQDFKDNVRVCNTLMDVYSR----FGCIEFARQVFQRMHK-RTLVSWNSIIVGFAV----NGFVGEALEYFNLMQKGVF 259 (305)
Q Consensus 189 ~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 259 (305)
.+.+ +...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+
T Consensus 141 ~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 216 (273)
T 1ouv_A 141 CDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE- 216 (273)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-
T ss_pred HhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-
Confidence 9876 56778888888888 9999999999999875 466788888999999 999999999999998865
Q ss_pred CCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHH
Q 036263 260 KTDEVSFTGALTACSH----AGLIEDGLQYFDIMK 290 (305)
Q Consensus 260 ~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~ 290 (305)
+...+..+...+.+ .+++++|.+.|+...
T Consensus 217 --~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 217 --NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp --CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 26677778888888 899999999999887
No 37
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.53 E-value=2.1e-12 Score=114.24 Aligned_cols=222 Identities=9% Similarity=-0.024 Sum_probs=182.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR 125 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 125 (305)
.+|..+...+...|++++|...|++..+. .|+... +..+...+.+.|++++|...|+.+.
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~------------------~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNS------------------YIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHH------------------HHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchH------------------HHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 35777778888999999999999999874 455333 3445566788899999999998874
Q ss_pred c-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH
Q 036263 126 G-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC 200 (305)
Q Consensus 126 ~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 200 (305)
. ..+|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+
T Consensus 304 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 381 (537)
T 3fp2_A 304 DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVP 381 (537)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHH
T ss_pred ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 4 5668889999999999999999999988753 2246788889999999999999999999998875 5667889
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccC---------chhhHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCC
Q 036263 201 NTLMDVYSRFGCIEFARQVFQRMHKR---------TLVSWNSIIVGFAVN----------GFVGEALEYFNLMQKGVFKT 261 (305)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p 261 (305)
..+...|...|++++|...|+++.+. ....+......+... |++++|...|++..+.. +.
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~ 460 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PR 460 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CC
Confidence 99999999999999999999998631 222344555677777 99999999999998853 34
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 262 DEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+...+..+...+.+.|++++|.+.|+...
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 66888899999999999999999999887
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=1.5e-12 Score=104.84 Aligned_cols=216 Identities=11% Similarity=-0.068 Sum_probs=163.8
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV 123 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 123 (305)
+...|..+...+...|++++|...|+++.+. .|+ +...+..+..++.+.|++++|...|++
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAI--RPD-----------------MPEVFNYLGIYLTQAGNFDAAYEAFDS 102 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCC-----------------cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5678888899999999999999999998874 332 234456677778999999999999988
Q ss_pred cCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChh
Q 036263 124 MRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR 198 (305)
Q Consensus 124 ~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 198 (305)
+.. ...+..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...++...... +++..
T Consensus 103 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 179 (275)
T 1xnf_A 103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQW 179 (275)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCST
T ss_pred HHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchH
Confidence 854 566888899999999999999999998774 4554455555556677799999999998877764 44444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccC-------chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036263 199 VCNTLMDVYSRFGCIEFARQVFQRMHKR-------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271 (305)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 271 (305)
.+. ++..+...++.++|...+++..+. +...|..+...|...|++++|...|++..+. .|+. +.....
T Consensus 180 ~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~ 254 (275)
T 1xnf_A 180 GWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRY 254 (275)
T ss_dssp HHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHH
T ss_pred HHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHH
Confidence 444 677777888889999999887743 2477888899999999999999999998875 3532 223355
Q ss_pred HHhccCcHHHHHHHH
Q 036263 272 ACSHAGLIEDGLQYF 286 (305)
Q Consensus 272 ~~~~~g~~~~a~~~~ 286 (305)
++...|++++|++.+
T Consensus 255 ~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 255 ALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHhhHHHH
Confidence 667778888887765
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=9.5e-13 Score=104.01 Aligned_cols=196 Identities=13% Similarity=0.097 Sum_probs=148.3
Q ss_pred CCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263 41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVV 120 (305)
Q Consensus 41 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 120 (305)
+..+...|..+...+...|++++|...|+++.+. .|+ +...+..+...+.+.|++++|...
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~ 79 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE-----------------DAIPYINFANLLSSVNELERALAF 79 (243)
T ss_dssp -----------------------CCTTHHHHHTT--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc-----------------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3446778888889999999999999999999873 343 233456667778999999999999
Q ss_pred HHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263 121 FDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195 (305)
Q Consensus 121 ~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (305)
++++.. ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. +.
T Consensus 80 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 157 (243)
T 2q7f_A 80 YDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-EN 157 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Cc
Confidence 998754 4568888999999999999999999988763 3467788899999999999999999999998875 56
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
+...+..+...|.+.|++++|...+++..+ .+..++..+...|...|++++|.+.++++.+.
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 788899999999999999999999999874 35778999999999999999999999999885
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=2.3e-12 Score=108.97 Aligned_cols=229 Identities=13% Similarity=-0.006 Sum_probs=188.3
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCC-hHHHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGR-MDLATVVFD 122 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~ 122 (305)
+...|+.+-..+.+.|++++|++.|++..+ +.|+. ...|+.+..++.+.|+ +++|+..|+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~-----------------~~a~~~~g~~l~~~g~d~~eAl~~~~ 156 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAAN-----------------YTVWHFRRVLLKSLQKDLHEEMNYIT 156 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTC-----------------HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccC-----------------HHHHHHHHHHHHHcccCHHHHHHHHH
Confidence 456788888999999999999999999987 45653 3345667777889997 999999999
Q ss_pred hcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC
Q 036263 123 VMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196 (305)
Q Consensus 123 ~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (305)
++.. ...|+.+..++...|++++|+..|++..+. .| +...|..+..++...|++++|...++++++.. +-+
T Consensus 157 ~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~ 233 (382)
T 2h6f_A 157 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRN 233 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCC
Confidence 9855 567999999999999999999999999875 45 68889999999999999999999999999986 567
Q ss_pred hhHHHHHHHHHHh-cCChHHH-----HHHHHhccc--C-chhhHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHH
Q 036263 197 VRVCNTLMDVYSR-FGCIEFA-----RQVFQRMHK--R-TLVSWNSIIVGFAVNG--FVGEALEYFNLMQKGVFKTDEVS 265 (305)
Q Consensus 197 ~~~~~~li~~~~~-~g~~~~a-----~~~~~~~~~--~-~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~ 265 (305)
...|+.+..++.+ .|..++| ...|++... | +...|+.+...+...| ++++|.+.+.++ +. -+.+...
T Consensus 234 ~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~a 311 (382)
T 2h6f_A 234 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYL 311 (382)
T ss_dssp HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHH
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHH
Confidence 8899999999999 6665777 477777763 3 6678988888898888 689999999988 32 3446688
Q ss_pred HHHHHHHHhccC---------cHHHHHHHHHHH-HHHhCCCCCc
Q 036263 266 FTGALTACSHAG---------LIEDGLQYFDIM-KKIYRVSPQI 299 (305)
Q Consensus 266 ~~~li~~~~~~g---------~~~~a~~~~~~m-~~~~~~~p~~ 299 (305)
+..+...+.+.| .+++|.++++.+ . .+.|..
T Consensus 312 l~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~---~~DP~r 352 (382)
T 2h6f_A 312 IAFLVDIYEDMLENQCDNKEDILNKALELCEILAK---EKDTIR 352 (382)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH---TTCGGG
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH---HhCchh
Confidence 888888988864 368999999988 5 444543
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=2.7e-12 Score=103.37 Aligned_cols=221 Identities=9% Similarity=-0.111 Sum_probs=171.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHH
Q 036263 57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWT 131 (305)
Q Consensus 57 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~ 131 (305)
..|++++|+..|+++.+.+...+.. +..++..+...+...|++++|...|+++.. ...|.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 81 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDE---------------RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFN 81 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCch---------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHH
Confidence 3578999999999998863221111 234456777889999999999999998854 56788
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 036263 132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG 211 (305)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 211 (305)
.+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++.+.+.. |+.......+..+...|
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~ 158 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKL 158 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhc
Confidence 99999999999999999999988753 2357788999999999999999999999998864 44444445555667779
Q ss_pred ChHHHHHHHHhccc--CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHhccCcHHHHHHHH
Q 036263 212 CIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK--T-DEVSFTGALTACSHAGLIEDGLQYF 286 (305)
Q Consensus 212 ~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~ 286 (305)
++++|...+++... |+......++..+...++.++|...+++..+.... | +...+..+...+.+.|++++|...|
T Consensus 159 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 159 DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275)
T ss_dssp CHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999977763 33233334777788889999999999988764311 1 2578888999999999999999999
Q ss_pred HHHHHHhCCCCC
Q 036263 287 DIMKKIYRVSPQ 298 (305)
Q Consensus 287 ~~m~~~~~~~p~ 298 (305)
+... ...|+
T Consensus 239 ~~al---~~~p~ 247 (275)
T 1xnf_A 239 KLAV---ANNVH 247 (275)
T ss_dssp HHHH---TTCCT
T ss_pred HHHH---hCCch
Confidence 9988 44453
No 42
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.47 E-value=5.4e-12 Score=104.11 Aligned_cols=192 Identities=14% Similarity=0.031 Sum_probs=159.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHH-
Q 036263 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY-LTIISV- 168 (305)
Q Consensus 96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~l- 168 (305)
.+...+..+..++.+.|++++|...++++.. ...+..+...+...|++++|.+.+++..+. .|+. ..+..+
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 130 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNL 130 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC-----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHh
Confidence 4667888899999999999999999998754 456888889999999999999999998765 3322 222222
Q ss_pred -------------HH-HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhH
Q 036263 169 -------------LN-VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSW 231 (305)
Q Consensus 169 -------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~ 231 (305)
.. .+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++.+ .+...|
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 209 (327)
T 3cv0_A 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW 209 (327)
T ss_dssp ---------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 22 3788899999999999998875 55788999999999999999999999999874 356789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263 232 NSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291 (305)
Q Consensus 232 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (305)
..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++...+
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999988853 34678899999999999999999999998873
No 43
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=2e-10 Score=94.48 Aligned_cols=233 Identities=11% Similarity=-0.010 Sum_probs=173.4
Q ss_pred chHhHHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCC-CHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCCh
Q 036263 44 TTVQWTSSISRHCRS----GCI----LEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRM 114 (305)
Q Consensus 44 ~~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~ 114 (305)
+...|...+....+. ++. ++|..+|++.... .| +...|......+. .....+.+.|++
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~--~p~~~~~w~~~~~~~~-----------~~~~~l~~~g~~ 73 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLE-----------QSSKLLAEKGDM 73 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHH-----------HHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHH-----------Hhchhhhhccch
Confidence 345666666665443 233 6788889888774 33 3333333222210 000011246886
Q ss_pred -------HHHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHhcCcCChh
Q 036263 115 -------DLATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YL-TIISVLNVCANVRTLG 179 (305)
Q Consensus 115 -------~~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~~~~~ 179 (305)
++|..+|++... ...|..++..+.+.|++++|.++|++..+ +.|+ .. .|..+...+.+.|+++
T Consensus 74 ~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~ 151 (308)
T 2ond_A 74 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIK 151 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHH
T ss_pred hhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHH
Confidence 899999998754 23588999999999999999999999887 4564 33 7899999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036263 180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYS-RFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255 (305)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 255 (305)
+|..+|++..+.. +.+...|........ ..|+.++|..+|++..+ | +...|..++..+.+.|++++|..+|++..
T Consensus 152 ~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 230 (308)
T 2ond_A 152 SGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999875 455666654444422 37999999999999874 3 67889999999999999999999999999
Q ss_pred HCC-CCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 036263 256 KGV-FKT--DEVSFTGALTACSHAGLIEDGLQYFDIMKKI 292 (305)
Q Consensus 256 ~~g-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (305)
... +.| +...|..++....+.|+.+.|..+++.+.+.
T Consensus 231 ~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 863 465 4568888888889999999999999998833
No 44
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=2.9e-12 Score=104.92 Aligned_cols=232 Identities=11% Similarity=0.009 Sum_probs=165.6
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGT---NPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVV 120 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 120 (305)
+..+|..+...+...|++++|...|+++.+... .++.. .....+..+...+...|++++|...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~la~~~~~~g~~~~A~~~ 91 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP--------------DVATMLNILALVYRDQNKYKDAANL 91 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH--------------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH--------------HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 567889999999999999999999999876310 00110 1123456777889999999999999
Q ss_pred HHhcCc-------------cccHHHHHHHHHcCCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhcCcCChhH
Q 036263 121 FDVMRG-------------CDFWTALLNGFVKRDYFEEALEYFRVMQIS------GVEP-DYLTIISVLNVCANVRTLGI 180 (305)
Q Consensus 121 ~~~~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~ 180 (305)
+++... ...+..+...+...|++++|...+++..+. +-.| ....+..+...+...|++++
T Consensus 92 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 92 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 987743 345788889999999999999999988654 2233 35668888889999999999
Q ss_pred HHHHHHHHhhc------CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcccC------------------chhhHHHHH
Q 036263 181 GLWMHRYVPKQ------DFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHKR------------------TLVSWNSII 235 (305)
Q Consensus 181 a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------------~~~~~~~li 235 (305)
|...+++..+. +..| ...++..+...|...|++++|.+.++++.+. ....+..+.
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence 99999988764 2122 3567888999999999999999999988731 122333344
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 236 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
..+...+.+.++...++...... +.+..++..+..+|.+.|++++|.++++...
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp ------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44556667777777777766532 2345778889999999999999999999887
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=2.8e-11 Score=91.58 Aligned_cols=157 Identities=11% Similarity=0.075 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (305)
|..+...+.+.|++++|++.|++..+. .| +..++..+...+...|++++|...++...... +.+...+..+...+.
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 444444444444444444444444332 22 34444444444555555555555555444443 233444444444455
Q ss_pred hcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036263 209 RFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY 285 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 285 (305)
..++++.|...+++..+ .+...+..+...|...|++++|.+.|++..+.. +-+..++..+..++.+.|++++|++.
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 55555555555544432 233444444555555555555555555544432 12334444555555555555555555
Q ss_pred HHHHH
Q 036263 286 FDIMK 290 (305)
Q Consensus 286 ~~~m~ 290 (305)
|++..
T Consensus 164 ~~~al 168 (184)
T 3vtx_A 164 FKKAL 168 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 46
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=1.4e-11 Score=104.80 Aligned_cols=246 Identities=12% Similarity=0.052 Sum_probs=171.4
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HhhHHHHHHhhcCCCC----------------------
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-----HITFVTLLSGCADFPS---------------------- 95 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~---------------------- 95 (305)
+....+...-..+...|++++|+..|++..+. .|+ ...+..+-..+...++
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 34555556666777777777777777777664 232 2344444444444554
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCC--------------------hH
Q 036263 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDY--------------------FE 144 (305)
Q Consensus 96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~--------------------~~ 144 (305)
....++..+...+...|++++|...+++... ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 1134566777788888999988888877644 2367778888888888 88
Q ss_pred HHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCC-CC----ChhHHHHHHHHHHhcCChH
Q 036263 145 EALEYFRVMQIS----GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KD----NVRVCNTLMDVYSRFGCIE 214 (305)
Q Consensus 145 ~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~ 214 (305)
+|...+++..+. +-.| ...++..+...+...|++++|...+++..+... .+ ...++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888765432 1112 245677778888888999999988888765310 11 1347788888899999999
Q ss_pred HHHHHHHhccc-----C----chhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHH
Q 036263 215 FARQVFQRMHK-----R----TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG----VFKT-DEVSFTGALTACSHAGLIE 280 (305)
Q Consensus 215 ~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~ 280 (305)
+|...+++..+ + ...++..+...|...|++++|...+++..+. +-.+ ...++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 99998888763 1 1457788888899999999999998887653 1111 1456777888888999999
Q ss_pred HHHHHHHHHH
Q 036263 281 DGLQYFDIMK 290 (305)
Q Consensus 281 ~a~~~~~~m~ 290 (305)
+|...++...
T Consensus 325 ~A~~~~~~al 334 (406)
T 3sf4_A 325 QAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988766
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=4.3e-11 Score=90.52 Aligned_cols=164 Identities=12% Similarity=0.098 Sum_probs=143.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036263 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV 171 (305)
Q Consensus 97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (305)
+..+|..+...+.+.|++++|...|++..+ ...|..+...+.+.|++++|...+....... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567899999999999999999999999854 5668899999999999999999999987753 2356677778888
Q ss_pred hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHH
Q 036263 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEAL 248 (305)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 248 (305)
+...++++.+...+....+.. +.+...+..+..+|.+.|++++|.+.|++..+ .+..+|..+..+|...|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 899999999999999998875 66788899999999999999999999999874 36788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHH
Q 036263 249 EYFNLMQKGVFKTDEV 264 (305)
Q Consensus 249 ~~~~~m~~~g~~p~~~ 264 (305)
+.|++..+ +.|+..
T Consensus 162 ~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 162 KYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHH--TTHHHH
T ss_pred HHHHHHHh--CCccCH
Confidence 99999988 456543
No 48
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.37 E-value=2e-11 Score=100.75 Aligned_cols=192 Identities=13% Similarity=0.019 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCC--------------------hHHHH
Q 036263 99 MVSTALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDY--------------------FEEAL 147 (305)
Q Consensus 99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~--------------------~~~a~ 147 (305)
.++..+...+...|++++|...+++... ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 3456667777888888888888777643 2257777777888888 88888
Q ss_pred HHHHHHHHc----CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc----CC-CCChhHHHHHHHHHHhcCChHHHH
Q 036263 148 EYFRVMQIS----GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ----DF-KDNVRVCNTLMDVYSRFGCIEFAR 217 (305)
Q Consensus 148 ~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~ 217 (305)
..+++.... +-.| ...++..+...+...|++++|...+++..+. +. .....++..+...|...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777765431 1112 2346667777778888888888888776543 11 111336777788888888888888
Q ss_pred HHHHhcccC---------chhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCcHHHHH
Q 036263 218 QVFQRMHKR---------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG----VF-KTDEVSFTGALTACSHAGLIEDGL 283 (305)
Q Consensus 218 ~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~ 283 (305)
..+++..+. ...++..+...|...|++++|...+++..+. +- .....++..+...+.+.|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 888876531 1456777788888888888888888876543 11 111346677778888888888888
Q ss_pred HHHHHHH
Q 036263 284 QYFDIMK 290 (305)
Q Consensus 284 ~~~~~m~ 290 (305)
..+++..
T Consensus 324 ~~~~~a~ 330 (338)
T 3ro2_A 324 HFAEKHL 330 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888776
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=1.7e-11 Score=104.78 Aligned_cols=244 Identities=15% Similarity=0.057 Sum_probs=148.1
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-----hhHHHHHHhhcCCCC----------------------CC
Q 036263 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH-----ITFVTLLSGCADFPS----------------------NN 97 (305)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~----------------------~~ 97 (305)
...+..+-..+...|++++|+..|++..+. .|+. ..+..+-..+...++ ..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 344556667888899999999999998885 3432 244444444444444 12
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCC-----------------hHHHHHH
Q 036263 98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDY-----------------FEEALEY 149 (305)
Q Consensus 98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~-----------------~~~a~~~ 149 (305)
...+..+...+...|++++|...+++... ...+..+...+...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 23455566666667777777766665533 2245666666666677 6666666
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCC-CC----hhHHHHHHHHHHhcCChHHHHHH
Q 036263 150 FRVMQIS----GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-DN----VRVCNTLMDVYSRFGCIEFARQV 219 (305)
Q Consensus 150 ~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~ 219 (305)
+++..+. +-.+ ...++..+...+...|++++|...+++..+.... .+ ...+..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 6654321 1111 2335566666667777777777777666543100 01 23566677777777777777777
Q ss_pred HHhcccC---------chhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHhccCcHHHHHHH
Q 036263 220 FQRMHKR---------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV----FK-TDEVSFTGALTACSHAGLIEDGLQY 285 (305)
Q Consensus 220 ~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~-p~~~~~~~li~~~~~~g~~~~a~~~ 285 (305)
+++..+. ...++..+...|...|++++|...+++..+.. -. ....++..+...+.+.|++++|.+.
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 7666521 13566667777777777777777777665421 01 1124566666777777777777777
Q ss_pred HHHHH
Q 036263 286 FDIMK 290 (305)
Q Consensus 286 ~~~m~ 290 (305)
++...
T Consensus 366 ~~~al 370 (411)
T 4a1s_A 366 AEQHL 370 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 50
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.3e-10 Score=92.38 Aligned_cols=195 Identities=8% Similarity=-0.052 Sum_probs=160.0
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYG--TNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVV 120 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 120 (305)
.+...|..+...+...|++++|++.|++..+.. ..|+... ...++..+...+.+.|++++|...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~ 101 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV--------------ISKSFARIGNAYHKLGDLKKTIEY 101 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH--------------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH--------------HHHHHHHHHHHHHHcccHHHHHHH
Confidence 567889999999999999999999999987642 1122110 024467778889999999999999
Q ss_pred HHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhH
Q 036263 121 FDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199 (305)
Q Consensus 121 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 199 (305)
|+.......- ...+.+.|++++|...+++.... .| +...+..+...+...|++++|...++...+.. +.+...
T Consensus 102 ~~~a~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 175 (258)
T 3uq3_A 102 YQKSLTEHRT---ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARG 175 (258)
T ss_dssp HHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHhcCch---hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHH
Confidence 9988652111 34566778899999999998774 44 46678888999999999999999999998876 567889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
+..+..+|.+.|++++|...+++..+ .+...|..+...+...|++++|...+++..+.
T Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999874 35778999999999999999999999998764
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.36 E-value=1.7e-10 Score=92.66 Aligned_cols=197 Identities=8% Similarity=-0.007 Sum_probs=158.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHh
Q 036263 100 VSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD--YLTIISVLNVC 172 (305)
Q Consensus 100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~ 172 (305)
.+......+.+.|++++|...|++..+ ...+..+...+...|++++|...+++..+.+-.|+ ...|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 345566778899999999999998844 55789999999999999999999999887432222 44588999999
Q ss_pred cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHH
Q 036263 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALE 249 (305)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~ 249 (305)
...|++++|...++...+.. +.+...+..+...|...|++++|...|++..+ | +...|..+...+...+++++|.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 55678999999999999999999999999985 3 55677777734455569999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHhCCCCC
Q 036263 250 YFNLMQKGVFKTDEVSFTGALTACSHAGL---IEDGLQYFDIMKKIYRVSPQ 298 (305)
Q Consensus 250 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~p~ 298 (305)
.|++..+.. +.+...+..+..++...|+ +++|...++...+...-.|+
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 214 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence 999998853 2346777778888888888 88888888888754443344
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.35 E-value=6.9e-10 Score=89.39 Aligned_cols=185 Identities=10% Similarity=-0.037 Sum_probs=159.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCc---cccHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036263 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRG---CDFWTALLNGFVK----RDYFEEALEYFRVMQISGVEPDYLTIISVL 169 (305)
Q Consensus 97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 169 (305)
+...+..+...+.+.|++++|...|++..+ ...+..+...+.. .+++++|...|++..+.+ +...+..+-
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 345566777888999999999999998754 4567888888999 999999999999988875 677788888
Q ss_pred HHhcC----cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhccc-CchhhHHHHHHHHHh
Q 036263 170 NVCAN----VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR----FGCIEFARQVFQRMHK-RTLVSWNSIIVGFAV 240 (305)
Q Consensus 170 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~ 240 (305)
..+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+ .+...+..+...|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 88888 999999999999998875 67888999999999 9999999999999875 366778888888888
Q ss_pred ----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHH
Q 036263 241 ----NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH----AGLIEDGLQYFDIMK 290 (305)
Q Consensus 241 ----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~ 290 (305)
.+++++|...|++..+.+ +...+..+...+.. .+++++|...++...
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 999999999999998864 46777788888888 999999999999887
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=2.5e-11 Score=106.05 Aligned_cols=189 Identities=12% Similarity=-0.013 Sum_probs=164.0
Q ss_pred CChhHHHHHHHHHHhcCCh-HHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036263 96 NNVMVSTALLDMYAKFGRM-DLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169 (305)
Q Consensus 96 ~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 169 (305)
.+...+..+...+...|++ ++|+..|++... ...|..+...|...|++++|.+.|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3556677788889999999 999999998854 567999999999999999999999998875 57788899999
Q ss_pred HHhcCc---------CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhccc--C----
Q 036263 170 NVCANV---------RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF--------GCIEFARQVFQRMHK--R---- 226 (305)
Q Consensus 170 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~~~~--~---- 226 (305)
..+... |++++|...+++..+.. +.+...|..+..+|... |++++|...|++..+ |
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 999999 99999999999999886 56788999999999998 999999999999874 4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288 (305)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (305)
+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...|++++|.+.+..
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67889999999999999999999999998853 23556788888899999999999876544
No 54
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=1.5e-10 Score=86.97 Aligned_cols=158 Identities=13% Similarity=0.086 Sum_probs=107.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 209 (305)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4445555666666666666666554431 2245566666667777777777777777766653 4456667777777777
Q ss_pred cCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036263 210 FGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286 (305)
Q Consensus 210 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 286 (305)
.|++++|.+.++++.+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777777653 355667777777778888888888887776653 335667777777888888888888888
Q ss_pred HHHH
Q 036263 287 DIMK 290 (305)
Q Consensus 287 ~~m~ 290 (305)
+...
T Consensus 168 ~~~~ 171 (186)
T 3as5_A 168 KKAN 171 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7776
No 55
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=2.9e-10 Score=85.41 Aligned_cols=157 Identities=15% Similarity=0.062 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 036263 99 MVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173 (305)
Q Consensus 99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (305)
..+..+...+...|++++|...++.+.. ...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3456677788899999999999999865 4558888899999999999999999987753 336778888999999
Q ss_pred CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHH
Q 036263 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEY 250 (305)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 250 (305)
..|++++|...++.+.+.. +.+...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999998875 56788899999999999999999999999874 3568899999999999999999999
Q ss_pred HHHHHHC
Q 036263 251 FNLMQKG 257 (305)
Q Consensus 251 ~~~m~~~ 257 (305)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9998764
No 56
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=3.5e-10 Score=95.84 Aligned_cols=224 Identities=8% Similarity=-0.019 Sum_probs=171.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---
Q 036263 51 SISRHCRSGCILEAALEFTRMRLYG-TNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--- 126 (305)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--- 126 (305)
.-..+...|++++|++.|++..+.- -.++... ...++..+...+...|+++.|...+++..+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 174 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIE--------------KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK 174 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4456678999999999999987641 1233221 123467778889999999999999887744
Q ss_pred ---------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc-
Q 036263 127 ---------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ- 191 (305)
Q Consensus 127 ---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~- 191 (305)
..+++.+...|...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+.
T Consensus 175 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 175 EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp TCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 246888899999999999999999887643 1111 1357888899999999999999999988762
Q ss_pred ---CC-CCChhHHHHHHHHHHhcCChHHHHHHHHhcccC-----c---hhhHHHHHHHHHhcCC---hHHHHHHHHHHHH
Q 036263 192 ---DF-KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR-----T---LVSWNSIIVGFAVNGF---VGEALEYFNLMQK 256 (305)
Q Consensus 192 ---~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~---~~~~~~li~~~~~~g~---~~~a~~~~~~m~~ 256 (305)
+. +....++..+...|.+.|++++|...+++..+- + ...+..+...|...|+ +++|..++++.
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-- 332 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-- 332 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--
T ss_pred HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--
Confidence 33 444778899999999999999999999987631 2 2335677788888998 77777777766
Q ss_pred CCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263 257 GVFKT-DEVSFTGALTACSHAGLIEDGLQYFDIMKK 291 (305)
Q Consensus 257 ~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (305)
+..| ....+..+...|...|++++|...++...+
T Consensus 333 -~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 333 -MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3333 335677888899999999999999998874
No 57
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=5.6e-11 Score=95.70 Aligned_cols=162 Identities=11% Similarity=0.037 Sum_probs=98.7
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc------C-CC
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQIS------GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ------D-FK 194 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~ 194 (305)
++..+...+...|++++|...+++..+. +-.| ...++..+...+...|++++|...+++..+. . -+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3555666666666666666666655432 1122 2445566666666666666666666665443 1 12
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcccC-----------chhhHHHHHHHHHhcCChHHHHHHHHHHHHC------
Q 036263 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR-----------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG------ 257 (305)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------ 257 (305)
.....+..+...|...|++++|...+++..+. ...++..+...|...|++++|..++++..+.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 23455566666666666666666666655421 2345556666666666666666666665432
Q ss_pred ------------------------------------------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 258 ------------------------------------------VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 258 ------------------------------------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
..+....++..+...+...|++++|..+++...
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111234577888899999999999999999876
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=1e-09 Score=90.20 Aligned_cols=195 Identities=10% Similarity=0.038 Sum_probs=154.4
Q ss_pred CchHhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHH
Q 036263 43 DTTVQWTSSISRHC-------RSGCI-------LEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMY 108 (305)
Q Consensus 43 ~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~ 108 (305)
.+...|......+. +.|++ ++|..+|++..+. +.|+. ...|..+...+
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~-----------------~~~~~~~~~~~ 109 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKN-----------------MLLYFAYADYE 109 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTC-----------------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCccc-----------------HHHHHHHHHHH
Confidence 36667777777765 35886 8999999998863 24542 23456677778
Q ss_pred HhcCChHHHHHHHHhcCc-----cc-cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cCcCChhHH
Q 036263 109 AKFGRMDLATVVFDVMRG-----CD-FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC-ANVRTLGIG 181 (305)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~-----~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~a 181 (305)
.+.|++++|..+|+++.. .. .|..+...+.+.|++++|..+|++..+.. +++...|....... ...|+.++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999854 33 78999999999999999999999988753 23444454333332 237999999
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc----C---chhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----R---TLVSWNSIIVGFAVNGFVGEALEYFNLM 254 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~a~~~~~~m 254 (305)
..+|+...+.. +.+...|..++..+.+.|+.++|..+|++... + ....|..++..+...|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998874 55788999999999999999999999999875 2 3468888999999999999999999999
Q ss_pred HHC
Q 036263 255 QKG 257 (305)
Q Consensus 255 ~~~ 257 (305)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 59
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.27 E-value=1.2e-09 Score=103.23 Aligned_cols=224 Identities=9% Similarity=0.028 Sum_probs=161.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhh---cCCCC-----CChhHHHHHHHHHHhcCChHHHHH
Q 036263 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC---ADFPS-----NNVMVSTALLDMYAKFGRMDLATV 119 (305)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~-----~~~~~~~~ll~~~~~~g~~~~a~~ 119 (305)
..-+-..+...|++++|.++|++.. . .....+.++... .++.+ .+..+|..+..++.+.|++++|.+
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~----~-~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD----V-NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC----C-HHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3445677888999999999999852 1 122222233211 11111 567889999999999999999999
Q ss_pred HHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhH
Q 036263 120 VFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199 (305)
Q Consensus 120 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 199 (305)
.|.+..+...|..++.++.+.|++++|.+.+...++.. ++....+.+..+|++.+++++...+. + .++...
T Consensus 1127 sYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A 1127 SYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred HHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence 99999888889999999999999999999998766543 44333445888888888877644442 1 345556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC----------------------
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG---------------------- 257 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------- 257 (305)
|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++....
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 667888888888888888888875 37777777777777777777777654221
Q ss_pred --CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 258 --VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 258 --g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
++..++..+..++..|.+.|.+++|+.+++...
T Consensus 1273 gl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1273 GLHIVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 122355667788888999999999999986554
No 60
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=3.6e-10 Score=103.03 Aligned_cols=155 Identities=10% Similarity=0.009 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHh
Q 036263 99 MVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVC 172 (305)
Q Consensus 99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~ 172 (305)
..++.|..++.+.|++++|+..|++..+ ...|+.+...|.+.|++++|++.|++..+. .| +...|..+-.++
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3445555555555555555555554422 233444555555555555555555544432 23 244444444555
Q ss_pred cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHH
Q 036263 173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALE 249 (305)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~ 249 (305)
...|++++|.+.|++..+.. +-+...|+.+..+|.+.|++++|.+.|++..+ | +...|..+...|...|++++|.+
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 55555555555555544443 23344445555555555555555555544432 2 33444444455555555555555
Q ss_pred HHHHHHH
Q 036263 250 YFNLMQK 256 (305)
Q Consensus 250 ~~~~m~~ 256 (305)
.+++..+
T Consensus 167 ~~~kal~ 173 (723)
T 4gyw_A 167 RMKKLVS 173 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 61
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.23 E-value=9.8e-10 Score=92.92 Aligned_cols=187 Identities=15% Similarity=0.086 Sum_probs=159.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCC-hHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 036263 98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDY-FEEALEYFRVMQISGVEP-DYLTIISVLN 170 (305)
Q Consensus 98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p-~~~t~~~ll~ 170 (305)
...|..+..++.+.|++++|+..++++.. ...|+.+...+...|+ +++|+..|++..+. .| +...|..+-.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 34577788889999999999999998854 5668899999999997 99999999999875 45 6788999999
Q ss_pred HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHh-cCChHH
Q 036263 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAV-NGFVGE 246 (305)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~-~g~~~~ 246 (305)
++...|++++|...++++++.. +-+...|..+..++.+.|++++|...|+++.+ .+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999999986 66789999999999999999999999999984 367899999999999 666577
Q ss_pred H-----HHHHHHHHHCCCCC-CHHHHHHHHHHHhccC--cHHHHHHHHHHH
Q 036263 247 A-----LEYFNLMQKGVFKT-DEVSFTGALTACSHAG--LIEDGLQYFDIM 289 (305)
Q Consensus 247 a-----~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g--~~~~a~~~~~~m 289 (305)
| ++.+++..+. .| +...|..+...+.+.| ++++|++.+..+
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 7 5888888874 35 5677888888888877 688888887765
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.22 E-value=4.4e-10 Score=102.48 Aligned_cols=159 Identities=13% Similarity=0.010 Sum_probs=142.4
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHH
Q 036263 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205 (305)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 205 (305)
...|+.|...+.+.|++++|++.|++..+. .| +..++..+-.+|.+.|++++|...|++..+.. +-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 346889999999999999999999998874 56 47889999999999999999999999999876 556889999999
Q ss_pred HHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHH
Q 036263 206 VYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIED 281 (305)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 281 (305)
+|.+.|++++|.+.|++..+ .+...|+.+..+|...|++++|.+.|++..+. .| +...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999874 36789999999999999999999999999884 45 56788999999999999999
Q ss_pred HHHHHHHHH
Q 036263 282 GLQYFDIMK 290 (305)
Q Consensus 282 a~~~~~~m~ 290 (305)
|.+.+++..
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988876
No 63
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=1.3e-09 Score=92.29 Aligned_cols=222 Identities=9% Similarity=-0.019 Sum_probs=166.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc----
Q 036263 52 ISRHCRSGCILEAALEFTRMRLYG-TNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---- 126 (305)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---- 126 (305)
-..+...|++++|+..|++..+.. -.++... ...++..+..+|...|+++.|...+++..+
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 173 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIE--------------KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN 173 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHH--------------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 345568999999999999987642 1133221 123467788889999999999988877643
Q ss_pred --------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc--
Q 036263 127 --------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-- 191 (305)
Q Consensus 127 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 191 (305)
..+++.+...+...|++++|.+.|++..+. +-.+ ...++..+...+...|++++|...+++..+.
T Consensus 174 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 174 HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 335778889999999999999999887542 2111 2456788888999999999999999988761
Q ss_pred --CCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-------C-chhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCC
Q 036263 192 --DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-------R-TLVSWNSIIVGFAVNGF---VGEALEYFNLMQKGV 258 (305)
Q Consensus 192 --~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~-~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g 258 (305)
+.+....++..+...|.+.|++++|...+++..+ + ....+..+...|...++ +.+|..++++. +
T Consensus 254 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~ 330 (378)
T 3q15_A 254 EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---N 330 (378)
T ss_dssp HHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---T
T ss_pred hhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---C
Confidence 2234477889999999999999999999998763 1 22345666666777888 77777777762 2
Q ss_pred CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 259 FKT-DEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 259 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
..| ....+..+...|.+.|++++|...|+...
T Consensus 331 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 331 LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 223 33566678889999999999999999876
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=3.6e-10 Score=98.66 Aligned_cols=190 Identities=11% Similarity=-0.082 Sum_probs=161.5
Q ss_pred CchHhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCI-LEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF 121 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 121 (305)
.+...|..+-..+...|++ ++|++.|++..+. .|+ +...|..+..+|.+.|++++|...|
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPE-----------------LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4778888889999999999 9999999999874 443 2345677788899999999999999
Q ss_pred HhcCc----cccHHHHHHHHHcC---------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCc--------CChh
Q 036263 122 DVMRG----CDFWTALLNGFVKR---------DYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANV--------RTLG 179 (305)
Q Consensus 122 ~~~~~----~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~--------~~~~ 179 (305)
++... ...+..+...+... |++++|.+.|++..+. .| +...|..+..+|... |+++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 98854 45688888999999 9999999999998875 44 578888888899888 9999
Q ss_pred HHHHHHHHHhhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHH
Q 036263 180 IGLWMHRYVPKQDFK---DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNL 253 (305)
Q Consensus 180 ~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 253 (305)
+|...|++..+.. + .+...|..+..+|...|++++|.+.|++..+ | +...+..+...+...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999875 3 5788999999999999999999999999874 3 566788889999999999999886655
Q ss_pred H
Q 036263 254 M 254 (305)
Q Consensus 254 m 254 (305)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 4
No 65
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.20 E-value=5e-08 Score=85.45 Aligned_cols=187 Identities=12% Similarity=-0.009 Sum_probs=114.9
Q ss_pred hhHHHHHHHHHHh----cCChHHHHHHHHhcCc---cccHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHH
Q 036263 98 VMVSTALLDMYAK----FGRMDLATVVFDVMRG---CDFWTALLNGFVK----RDYFEEALEYFRVMQISGVEPDYLTII 166 (305)
Q Consensus 98 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~---~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~ 166 (305)
...+..+...|.. .++.++|...|++..+ ...+..+...+.. .++.++|...|++..+.| +...+.
T Consensus 219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~ 295 (490)
T 2xm6_A 219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQY 295 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHH
Confidence 3344444444443 4555666666555433 2234444444544 566666666666655443 233444
Q ss_pred HHHHHhcCc-----CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhccc-CchhhHHHHHHH
Q 036263 167 SVLNVCANV-----RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG---CIEFARQVFQRMHK-RTLVSWNSIIVG 237 (305)
Q Consensus 167 ~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~-~~~~~~~~li~~ 237 (305)
.+-..+... ++.++|...++...+.| +...+..+...|...| +.++|.+.|++..+ .+...+..+...
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~ 372 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNA 372 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444444444 66777777777766654 3445556666666555 56777777777654 356677777777
Q ss_pred HHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHhC
Q 036263 238 FAV----NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH----AGLIEDGLQYFDIMKKIYR 294 (305)
Q Consensus 238 ~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 294 (305)
|.. .+++++|..+|++..+.| +...+..+-..|.+ .+++++|..+|+... ..+
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~~ 433 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS-TND 433 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCC
Confidence 777 788888888888887765 45666667777766 788888888888777 443
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=2.5e-09 Score=83.66 Aligned_cols=182 Identities=10% Similarity=-0.039 Sum_probs=102.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 036263 98 VMVSTALLDMYAKFGRMDLATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLN 170 (305)
Q Consensus 98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~ 170 (305)
...+......+.+.|++++|...|+.... ...+..+..++...|++++|...|++..+. .| +...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34556666666666777777766665532 223444666666666677776666666543 33 3455666666
Q ss_pred HhcCcCChhHHHHHHHHHhhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhccc--Cc---hhhHHHHHHHH
Q 036263 171 VCANVRTLGIGLWMHRYVPKQDFKDNV-------RVCNTLMDVYSRFGCIEFARQVFQRMHK--RT---LVSWNSIIVGF 238 (305)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~li~~~ 238 (305)
.+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++..+ |+ ...|..+...|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 6666666666666666666653 2333 3455566666666666666666666653 22 23444555555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 239 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
...| ..+++++...+ ..+...|.... ....+.+++|...++...
T Consensus 164 ~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp HHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 4332 23334443332 12233333322 223355689999998887
No 67
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.18 E-value=1e-07 Score=83.46 Aligned_cols=235 Identities=11% Similarity=-0.034 Sum_probs=125.3
Q ss_pred chHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcC----CCC--------------CChhHH
Q 036263 44 TTVQWTSSISRHCR----SGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD----FPS--------------NNVMVS 101 (305)
Q Consensus 44 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~--------------~~~~~~ 101 (305)
+...+..+-..|.. .+++++|...|++..+.|. ...+..+=..+.. .++ .+...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGY---TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 55666666666666 6777777777777766532 2222222222222 222 344455
Q ss_pred HHHHHHHHh----cCChHHHHHHHHhcCc---cccHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036263 102 TALLDMYAK----FGRMDLATVVFDVMRG---CDFWTALLNGFVK----RDYFEEALEYFRVMQISGVEPDYLTIISVLN 170 (305)
Q Consensus 102 ~~ll~~~~~----~g~~~~a~~~~~~~~~---~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 170 (305)
..|...|.. .+++++|...|++..+ ...+..|...|.. .+++++|.+.|++..+.| +...+..+-.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 556666665 5667777777766543 3334555555554 566666666666665543 3444444444
Q ss_pred HhcC----cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhccc-CchhhHHHHHHHHHh-
Q 036263 171 VCAN----VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR----FGCIEFARQVFQRMHK-RTLVSWNSIIVGFAV- 240 (305)
Q Consensus 171 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~- 240 (305)
.|.. .++.++|...++...+.| +...+..+...|.. .++.++|...|++..+ .+...+..+...|..
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQG 268 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Confidence 4444 566666666666665543 33445555555554 5556666666655543 233444444444544
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHH
Q 036263 241 ---NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA-----GLIEDGLQYFDIMK 290 (305)
Q Consensus 241 ---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~ 290 (305)
.+++++|..+|++..+.| +...+..+...+... +++++|..+|+...
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 555556665555555443 233333444444443 55555555555544
No 68
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.17 E-value=1.5e-08 Score=95.92 Aligned_cols=227 Identities=9% Similarity=0.036 Sum_probs=158.4
Q ss_pred CCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHhhHHHHHHhhcCCCC---------CChhHHHHHHHHHHh
Q 036263 42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGT--NPSHITFVTLLSGCADFPS---------NNVMVSTALLDMYAK 110 (305)
Q Consensus 42 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~---------~~~~~~~~ll~~~~~ 110 (305)
.|+.+ ...+++|...|.+.+|+++|++..-.+- .-+...-+.++.+..+... .+......+...+..
T Consensus 984 ~PeeV--s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 984 DPEEV--SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAIS 1061 (1630)
T ss_pred CHHHh--HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHh
Confidence 45555 4558899999999999999999984321 1123444556666655544 112222333455555
Q ss_pred cCChHHHHHHHHhc---------------------------CccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH
Q 036263 111 FGRMDLATVVFDVM---------------------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163 (305)
Q Consensus 111 ~g~~~~a~~~~~~~---------------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 163 (305)
.|.+++|..+|++. ....+|..+..++.+.|++++|.+.|.+- -|..
T Consensus 1062 lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~s 1135 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPS 1135 (1630)
T ss_pred CCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChH
Confidence 56666666665554 33556778888888888888888887442 3566
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCC
Q 036263 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243 (305)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 243 (305)
.|..++.+|.+.|++++|.+++...++.. +++...+.++.+|++.+++++...+. ..++...|..+...|...|+
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~ 1210 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKM 1210 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCC
Confidence 77778888888888888888888776654 34334445888888888887644443 35566777788888999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 244 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+++|..+|... ..|..+..++.+.|+++.|.+.++...
T Consensus 1211 YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1211 YDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 99999999884 478888899999999999988887653
No 69
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.14 E-value=3.8e-08 Score=82.83 Aligned_cols=190 Identities=9% Similarity=-0.095 Sum_probs=126.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCc-------------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCC--C--CHH
Q 036263 101 STALLDMYAKFGRMDLATVVFDVMRG-------------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVE--P--DYL 163 (305)
Q Consensus 101 ~~~ll~~~~~~g~~~~a~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p--~~~ 163 (305)
+..+...+...|++++|...+++... ...+..+...+...|++++|...+++.....-. + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 45566677788888888888876633 123455667778888888888888876553211 1 235
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC-hhHHH-----HHHHHHHhcCChHHHHHHHHhcccCc-------hhh
Q 036263 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN-VRVCN-----TLMDVYSRFGCIEFARQVFQRMHKRT-------LVS 230 (305)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~ 230 (305)
++..+...+...|++++|...+++..+..-.++ ...+. ..+..+...|++++|...+++...+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 666777778888888888888887765321111 11111 23344678888888888888876432 124
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 231 WNSIIVGFAVNGFVGEALEYFNLMQKG----VFKTDE-VSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 231 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 566777888888888888888876542 222222 255566677788888888888888765
No 70
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=5.8e-09 Score=85.03 Aligned_cols=197 Identities=9% Similarity=-0.080 Sum_probs=134.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM 124 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 124 (305)
..|+.....|...|++++|.+.|++..+..... +.. ....+|+.+..+|.+.|++++|...|++.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~a~~~~~lg~~~~~~g~~~~A~~~~~~A 103 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNED--------------EAGNTYVEAYKCFKSGGNSVNAVDSLENA 103 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHH--------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 468888888999999999999998876531000 100 01235677788888999999999888877
Q ss_pred Cc-----------cccHHHHHHHHHcC-CChHHHHHHHHHHHHcCC---CC-C-HHHHHHHHHHhcCcCChhHHHHHHHH
Q 036263 125 RG-----------CDFWTALLNGFVKR-DYFEEALEYFRVMQISGV---EP-D-YLTIISVLNVCANVRTLGIGLWMHRY 187 (305)
Q Consensus 125 ~~-----------~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~---~p-~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 187 (305)
.. ..+++.+...|... |++++|+..|++..+... .+ . ..++..+...+...|++++|...+++
T Consensus 104 l~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44 23577788888885 888888888887654210 11 1 34677788888888888888888888
Q ss_pred HhhcCCCCCh------hHHHHHHHHHHhcCChHHHHHHHHhccc--Cch------hhHHHHHHHHH--hcCChHHHHHHH
Q 036263 188 VPKQDFKDNV------RVCNTLMDVYSRFGCIEFARQVFQRMHK--RTL------VSWNSIIVGFA--VNGFVGEALEYF 251 (305)
Q Consensus 188 ~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~------~~~~~li~~~~--~~g~~~~a~~~~ 251 (305)
..+....... ..|..+..++...|++++|...|++..+ |+. ..+..++.+|. ..+++++|...|
T Consensus 184 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 8775422221 1567777788888888888888888764 221 12344555554 345677777777
Q ss_pred HHHHH
Q 036263 252 NLMQK 256 (305)
Q Consensus 252 ~~m~~ 256 (305)
+++..
T Consensus 264 ~~~~~ 268 (292)
T 1qqe_A 264 DNFMR 268 (292)
T ss_dssp TTSSC
T ss_pred ccCCc
Confidence 66554
No 71
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=4.5e-09 Score=74.27 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=51.1
Q ss_pred HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHH
Q 036263 171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEA 247 (305)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 247 (305)
.+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|
T Consensus 10 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 88 (136)
T 2fo7_A 10 AYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 88 (136)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHH
Confidence 3333334444444443333322 22233334444444444444444444444331 1233444444444555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 248 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.++++++.+.. +.+...+..+...+.+.|++++|...++.+.
T Consensus 89 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 89 IEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 55555544432 1233444445555555555555555555544
No 72
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=5e-09 Score=74.02 Aligned_cols=127 Identities=17% Similarity=0.226 Sum_probs=111.6
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (305)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 47788899999999999999999988763 3367788888999999999999999999998875 556788999999999
Q ss_pred hcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 209 RFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
..|++++|.+.++++.+ .+...+..+...+...|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999998874 35678889999999999999999999998774
No 73
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.11 E-value=1.9e-09 Score=86.58 Aligned_cols=187 Identities=12% Similarity=0.028 Sum_probs=142.9
Q ss_pred HhcCChhHHHHHHHHHHhCC---CCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc------
Q 036263 56 CRSGCILEAALEFTRMRLYG---TNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG------ 126 (305)
Q Consensus 56 ~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------ 126 (305)
...|++++|+..|++..+.- ..++.. ....++..+...+...|++++|...+++...
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHP--------------DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL 77 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCH--------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc
Confidence 45678888888887776521 111111 1234456778889999999999999987743
Q ss_pred -------cccHHHHHHHHHcCCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc-
Q 036263 127 -------CDFWTALLNGFVKRDYFEEALEYFRVMQIS------GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ- 191 (305)
Q Consensus 127 -------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~- 191 (305)
..++..+...+...|++++|.+.+++..+. .-.| ...++..+...+...|++++|...+++..+.
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 345888999999999999999999987654 1123 4677888999999999999999999998765
Q ss_pred -----C-CCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---------------------------------------
Q 036263 192 -----D-FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR--------------------------------------- 226 (305)
Q Consensus 192 -----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------------------------------------- 226 (305)
+ .+....++..+...|...|++++|...+++..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (283)
T 3edt_B 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY 237 (283)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 1 1223667889999999999999999999877521
Q ss_pred -------------chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 227 -------------TLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 227 -------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
...++..+...|...|++++|..++++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 238 GSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 124678889999999999999999998765
No 74
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.10 E-value=2.2e-08 Score=87.01 Aligned_cols=244 Identities=10% Similarity=-0.048 Sum_probs=126.5
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCC-CHhhHHHHHHhhcCCCC--------------------
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLY-----G--TNP-SHITFVTLLSGCADFPS-------------------- 95 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~-------------------- 95 (305)
....||.+-..+...|++++|++.|++..+. + ..| ...+|+.+-..+...|+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4667999999999999999999999887542 1 122 23344444444444444
Q ss_pred ----CChhHHHHHHHHHHhc--CChHHHHHHHHhcCc-----cccHHHHHH---HHHcCCChHHHHHHHHHHHHcCCCC-
Q 036263 96 ----NNVMVSTALLDMYAKF--GRMDLATVVFDVMRG-----CDFWTALLN---GFVKRDYFEEALEYFRVMQISGVEP- 160 (305)
Q Consensus 96 ----~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~-----~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~g~~p- 160 (305)
....++..+..++.+. +++++|...|++... ...+..+.. .+...++.++|++.+++..+. .|
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCc
Confidence 1122333333333332 345555555555422 111222221 123334444555555444332 22
Q ss_pred CHHHHHHHHHHh----cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C--------
Q 036263 161 DYLTIISVLNVC----ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-------- 226 (305)
Q Consensus 161 ~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-------- 226 (305)
+..++..+...+ ...++.++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+ |
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 223333222222 23355666777776666654 45566677777777777777777777766542 1
Q ss_pred ----------------------------------------------chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036263 227 ----------------------------------------------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260 (305)
Q Consensus 227 ----------------------------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 260 (305)
+...+..+...|...|++++|.+.|++..+....
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 1123445555666777777777777777664332
Q ss_pred CCHH--HHHHHHH-HHhccCcHHHHHHHHHHHH
Q 036263 261 TDEV--SFTGALT-ACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 261 p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~ 290 (305)
|... .+..+.. .....|++++|+..|++..
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2211 1222221 2335677777777776655
No 75
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.07 E-value=1.7e-09 Score=92.17 Aligned_cols=193 Identities=13% Similarity=0.022 Sum_probs=153.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CH
Q 036263 99 MVSTALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-DY 162 (305)
Q Consensus 99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~ 162 (305)
..+..+...+...|++++|...+++... ...+..+...+...|++++|...+++..+. +-.| ..
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 5788899999999999999999987744 345888899999999999999999887553 2122 35
Q ss_pred HHHHHHHHHhcCcCC-----------------hhHHHHHHHHHhhc----CC-CCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 163 LTIISVLNVCANVRT-----------------LGIGLWMHRYVPKQ----DF-KDNVRVCNTLMDVYSRFGCIEFARQVF 220 (305)
Q Consensus 163 ~t~~~ll~~~~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~ 220 (305)
.++..+...+...|+ +++|...+++..+. +- +.....+..+...|...|++++|...+
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 577888888999999 99999888876542 21 122457888999999999999999999
Q ss_pred HhcccC-----c----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CC---CCHHHHHHHHHHHhccCcHHHHHHHH
Q 036263 221 QRMHKR-----T----LVSWNSIIVGFAVNGFVGEALEYFNLMQKGV--FK---TDEVSFTGALTACSHAGLIEDGLQYF 286 (305)
Q Consensus 221 ~~~~~~-----~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~---p~~~~~~~li~~~~~~g~~~~a~~~~ 286 (305)
++..+- + ..++..+...|...|++++|...+++..+.. .. ....++..+...+...|++++|..++
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988641 1 2378889999999999999999999876531 10 12467888888999999999999999
Q ss_pred HHHHH
Q 036263 287 DIMKK 291 (305)
Q Consensus 287 ~~m~~ 291 (305)
+....
T Consensus 327 ~~al~ 331 (411)
T 4a1s_A 327 NRHLA 331 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98763
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.06 E-value=5.5e-09 Score=85.23 Aligned_cols=162 Identities=9% Similarity=-0.003 Sum_probs=112.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc------CC-CC
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQIS-------GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ------DF-KD 195 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~ 195 (305)
+..+...+...|++++|..++++..+. .......++..+...+...|++++|...+++..+. +- +.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 555556666666666666666655442 11223556667777777778888887777776553 21 22
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhccc----------C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 036263 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK----------R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG------V 258 (305)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g 258 (305)
....+..+...|...|++++|...+++..+ + ....+..+...|...|++++|.+++++..+. +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356677788888888888888888877652 1 3356777888888889999999888887664 2
Q ss_pred CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263 259 FKT-DEVSFTGALTACSHAGLIEDGLQYFDIMKK 291 (305)
Q Consensus 259 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (305)
-.| ...++..+...+...|++++|.++++...+
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233 335677888889999999999999988873
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=6e-09 Score=84.93 Aligned_cols=184 Identities=10% Similarity=-0.029 Sum_probs=136.6
Q ss_pred HHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CHHHHHHH
Q 036263 105 LDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-DYLTIISV 168 (305)
Q Consensus 105 l~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~l 168 (305)
...|...|++++|...|++... ..+|+.+...|.+.|++++|...+++..+. |-.+ -..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3447778999999998887643 346889999999999999999999877542 2111 14578888
Q ss_pred HHHhcCc-CChhHHHHHHHHHhhcCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc---h-----hhHH
Q 036263 169 LNVCANV-RTLGIGLWMHRYVPKQDFKD-N----VRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT---L-----VSWN 232 (305)
Q Consensus 169 l~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~---~-----~~~~ 232 (305)
...|... |++++|...+++..+..... + ..++..+...|.+.|++++|...|++..+ |+ . ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8899986 99999999999887642111 1 45688899999999999999999999874 21 1 1567
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHh--ccCcHHHHHHHHHHHH
Q 036263 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDE------VSFTGALTACS--HAGLIEDGLQYFDIMK 290 (305)
Q Consensus 233 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~--~~g~~~~a~~~~~~m~ 290 (305)
.+..++...|++++|...|++..+. .|+. ..+..++.++. ..+++++|...|+.+.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 7888899999999999999998763 3432 23445566664 4567888888876553
No 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.04 E-value=1.2e-08 Score=86.43 Aligned_cols=199 Identities=8% Similarity=-0.081 Sum_probs=155.5
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC-HhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPS-HITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF 121 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 121 (305)
...+|..+-..+...|++++|+..+++..+.-. .++ ... ...+++.+..+|...|++++|...|
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~lg~~~~~~g~~~~A~~~~ 207 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR--------------LLQCHSLFATNFLDLKQYEDAISHF 207 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH--------------HHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 346788899999999999999999998876311 111 110 1234677888899999999999999
Q ss_pred HhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcCcCChhHHHHHH
Q 036263 122 DVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-DYLTIISVLNVCANVRTLGIGLWMH 185 (305)
Q Consensus 122 ~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~ 185 (305)
++..+ ..++..+...+...|++++|...+++..+. +..| ...++..+...+...|++++|...+
T Consensus 208 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 287 (383)
T 3ulq_A 208 QKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYH 287 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88754 247889999999999999999999987652 3323 4677889999999999999999999
Q ss_pred HHHhhc----CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhcccC--chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 186 RYVPKQ----DFKDNVRVCNTLMDVYSRFGC---IEFARQVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 186 ~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
++..+. +-+.....+..+...|...|+ +++|..++++.... ....+..+...|...|++++|...+++..+
T Consensus 288 ~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 288 SKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 987653 212223346778888889998 88999999988643 345777889999999999999999998765
No 79
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.03 E-value=6.3e-08 Score=85.65 Aligned_cols=193 Identities=11% Similarity=0.004 Sum_probs=153.0
Q ss_pred ChhHHHHHHHHHHh-------cCChH-------HHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 036263 97 NVMVSTALLDMYAK-------FGRMD-------LATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVMQIS 156 (305)
Q Consensus 97 ~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (305)
+...|..+...+.+ .|+++ +|..+|++... ...|..++..+.+.|++++|..+|++..+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 45567777777765 79987 89999998753 345888899999999999999999999874
Q ss_pred CCCCC--HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHH-HHhcCChHHHHHHHHhccc--C-chhh
Q 036263 157 GVEPD--YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV-YSRFGCIEFARQVFQRMHK--R-TLVS 230 (305)
Q Consensus 157 g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~--~-~~~~ 230 (305)
.|+ ...|...+..+.+.|+.++|..+|+...+.. +.+...|...... +...|+.++|..+|++..+ | +...
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~ 427 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 427 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHH
Confidence 564 3578888888889999999999999998864 3334444333222 3468999999999998874 4 6788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 036263 231 WNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTD--EVSFTGALTACSHAGLIEDGLQYFDIMKKI 292 (305)
Q Consensus 231 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (305)
|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+....+.|+.+.+..+++.+.+.
T Consensus 428 ~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 428 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998864 2332 447777788888889999999999988743
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.03 E-value=2.4e-08 Score=78.04 Aligned_cols=169 Identities=10% Similarity=-0.011 Sum_probs=131.0
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 036263 128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207 (305)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 207 (305)
..+......+...|++++|...|++..+..-.++...+..+..++...|++++|...++...+.. +.+...|..+..+|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 34666777888899999999999988776533677777778888899999999999999988775 45677888899999
Q ss_pred HhcCChHHHHHHHHhccc--C-ch-------hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHh
Q 036263 208 SRFGCIEFARQVFQRMHK--R-TL-------VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD---EVSFTGALTACS 274 (305)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~--~-~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~ 274 (305)
...|++++|...+++..+ | +. ..|..+...+...|++++|.+.|++..+. .|+ ...+..+..++.
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHH
Confidence 999999999999988874 3 33 45777788888899999999999998874 465 466777777777
Q ss_pred ccCcH-HHH-----------------------HHHHHHHHHHhCCCCCc
Q 036263 275 HAGLI-EDG-----------------------LQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 275 ~~g~~-~~a-----------------------~~~~~~m~~~~~~~p~~ 299 (305)
..|+. -+. .+....+.+...+.|+.
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 77665 111 67777777667777664
No 81
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.01 E-value=5.7e-09 Score=85.85 Aligned_cols=231 Identities=12% Similarity=-0.008 Sum_probs=175.4
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263 45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM 124 (305)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 124 (305)
...+...-..+...|++++|...|+++.+. .|+..... ...+..+...+...|++++|...+++.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~a 69 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTL-------------SAIYSQLGNAYFYLHDYAKALEYHHHD 69 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHH-------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHH-------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555667888999999999999999885 34321110 133566777899999999999999876
Q ss_pred Cc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcCcCC-----------
Q 036263 125 RG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQISGV-EPD----YLTIISVLNVCANVRT----------- 177 (305)
Q Consensus 125 ~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~----------- 177 (305)
.. ...+..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 70 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (338)
T 3ro2_A 70 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTG 149 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC---
T ss_pred HHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhh
Confidence 43 44578888999999999999999988754210 112 4477888888899999
Q ss_pred ---------hhHHHHHHHHHhhc----CC-CCChhHHHHHHHHHHhcCChHHHHHHHHhccc-----C----chhhHHHH
Q 036263 178 ---------LGIGLWMHRYVPKQ----DF-KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----R----TLVSWNSI 234 (305)
Q Consensus 178 ---------~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l 234 (305)
+++|...+++..+. +. +.....+..+...|...|++++|...+++..+ + ...++..+
T Consensus 150 ~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 229 (338)
T 3ro2_A 150 EFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 229 (338)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 89999888876542 21 12245788889999999999999999998763 1 23478888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 235 IVGFAVNGFVGEALEYFNLMQKGV----FKT-DEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 235 i~~~~~~g~~~~a~~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
...+...|++++|...+++..+.. -.+ ...++..+...+...|++++|...++...
T Consensus 230 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999999876531 111 14677788889999999999999999876
No 82
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.00 E-value=5.6e-09 Score=88.56 Aligned_cols=194 Identities=11% Similarity=-0.036 Sum_probs=152.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-C
Q 036263 98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-D 161 (305)
Q Consensus 98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~ 161 (305)
..++..+...+...|++++|...+++... ...+..+...+...|++++|...+++..+. +-.+ .
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 126 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence 35788899999999999999999987633 445788889999999999999999887543 1111 1
Q ss_pred HHHHHHHHHHhcCcCC--------------------hhHHHHHHHHHhhc----CCC-CChhHHHHHHHHHHhcCChHHH
Q 036263 162 YLTIISVLNVCANVRT--------------------LGIGLWMHRYVPKQ----DFK-DNVRVCNTLMDVYSRFGCIEFA 216 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a 216 (305)
..++..+...+...|+ +++|...++...+. +.. ....++..+...|...|++++|
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 4578888888999999 99999888876542 211 1245788889999999999999
Q ss_pred HHHHHhccc-----Cc----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHH
Q 036263 217 RQVFQRMHK-----RT----LVSWNSIIVGFAVNGFVGEALEYFNLMQKG----VFKT-DEVSFTGALTACSHAGLIEDG 282 (305)
Q Consensus 217 ~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a 282 (305)
...+++..+ ++ ..++..+...|...|++++|...+++..+. +-.+ ...++..+...+...|++++|
T Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 999998863 11 247888999999999999999999987653 1111 146778888899999999999
Q ss_pred HHHHHHHHH
Q 036263 283 LQYFDIMKK 291 (305)
Q Consensus 283 ~~~~~~m~~ 291 (305)
...++....
T Consensus 287 ~~~~~~a~~ 295 (406)
T 3sf4_A 287 IDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998773
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=5.4e-08 Score=78.82 Aligned_cols=160 Identities=11% Similarity=0.016 Sum_probs=119.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhc-------CccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-----CHHH
Q 036263 97 NVMVSTALLDMYAKFGRMDLATVVFDVM-------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-----DYLT 164 (305)
Q Consensus 97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~t 164 (305)
+......+..++...|++++|++++++. .....+..++..+.+.|+.+.|.+.++.|.+. .| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHH
Confidence 3344456677788899999999999988 23556778889999999999999999999774 66 3566
Q ss_pred HHHHHHHh--c--CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc------------C-c
Q 036263 165 IISVLNVC--A--NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK------------R-T 227 (305)
Q Consensus 165 ~~~ll~~~--~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------------~-~ 227 (305)
...+..++ . ..++..+|..+|+++.+. .|+..+...++.++.+.|++++|++.++.+.+ | |
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 66666553 2 334899999999998665 35544445555689999999999999987543 2 5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036263 228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264 (305)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 264 (305)
..+...+|......|+ +|.+++.++.+. .|+..
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 5666566666666776 888999999884 46543
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.97 E-value=4.9e-08 Score=82.50 Aligned_cols=199 Identities=10% Similarity=-0.034 Sum_probs=152.7
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC-HhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPS-HITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF 121 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 121 (305)
...+|..+-..+...|+++.|+..+++..+... .++ ... ...+++.+..+|...|++++|...|
T Consensus 140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~lg~~y~~~~~~~~A~~~~ 205 (378)
T 3q15_A 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR--------------TIQSLFVIAGNYDDFKHYDKALPHL 205 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh--------------HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 346788888999999999999999998876311 111 110 1234677888899999999999999
Q ss_pred HhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHhcCcCChhHHHHHHH
Q 036263 122 DVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEPDYLTIISVLNVCANVRTLGIGLWMHR 186 (305)
Q Consensus 122 ~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 186 (305)
++..+ ..+++.+...+...|++++|...+++..+. +-+....++..+...+.+.|++++|...++
T Consensus 206 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 206 EAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIE 285 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 87744 346888999999999999999999987651 222336778889999999999999999999
Q ss_pred HHhhcC----CCCChhHHHHHHHHHHhcCC---hHHHHHHHHhcccC--chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 187 YVPKQD----FKDNVRVCNTLMDVYSRFGC---IEFARQVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 187 ~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
+..+.. -+.....+..+...|...++ +.+|...+++.... ....+..+...|...|++++|...|++..+
T Consensus 286 ~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 286 EGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 987642 22234456667777778888 88899999886532 335667888999999999999999998764
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.95 E-value=3.6e-08 Score=78.73 Aligned_cols=159 Identities=9% Similarity=-0.009 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCC-HHHHHH
Q 036263 98 VMVSTALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGV-EPD-YLTIIS 167 (305)
Q Consensus 98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~-~~t~~~ 167 (305)
...+-.+...+.+.|++++|...|+.+.. ...+..+..++.+.|++++|...|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34455566678888999999999988854 23467778888999999999999998877521 122 445666
Q ss_pred HHHHhcC--------cCChhHHHHHHHHHhhcCCCCChhHH-----------------HHHHHHHHhcCChHHHHHHHHh
Q 036263 168 VLNVCAN--------VRTLGIGLWMHRYVPKQDFKDNVRVC-----------------NTLMDVYSRFGCIEFARQVFQR 222 (305)
Q Consensus 168 ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~ 222 (305)
+..++.. .|++++|...|+++.+.. +.+.... ..+...|.+.|++++|...|++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6677777 889999999999888764 3333333 4456677778888888888877
Q ss_pred ccc--Cc----hhhHHHHHHHHHhc----------CChHHHHHHHHHHHHC
Q 036263 223 MHK--RT----LVSWNSIIVGFAVN----------GFVGEALEYFNLMQKG 257 (305)
Q Consensus 223 ~~~--~~----~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 257 (305)
+.+ |+ ...+..+..+|... |++++|...|++..+.
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 753 32 24566666666655 7777888888777764
No 86
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.95 E-value=1e-07 Score=84.34 Aligned_cols=193 Identities=10% Similarity=0.043 Sum_probs=149.1
Q ss_pred chHhHHHHHHHHHh-------cCChh-------HHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHH
Q 036263 44 TTVQWTSSISRHCR-------SGCIL-------EAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYA 109 (305)
Q Consensus 44 ~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~ 109 (305)
+...|......+.+ .|+++ +|..+|++..+. +.|+ +...|..++..+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~-----------------~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKK-----------------NMLLYFAYADYEE 332 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSS-----------------CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcc-----------------cHHHHHHHHHHHH
Confidence 45667777777765 68887 889999888752 2343 2344566777788
Q ss_pred hcCChHHHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-hcCcCChhHH
Q 036263 110 KFGRMDLATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNV-CANVRTLGIG 181 (305)
Q Consensus 110 ~~g~~~~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~-~~~~~~~~~a 181 (305)
+.|++++|..+|+++.. ...|..++..+.+.|++++|.++|++..+. .|+ ...|...... +...|+.++|
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHH
Confidence 99999999999998844 136888888888999999999999998764 332 3333322222 3358999999
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---c----hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---T----LVSWNSIIVGFAVNGFVGEALEYFNLM 254 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~----~~~~~~li~~~~~~g~~~~a~~~~~~m 254 (305)
..+|+...+.. +.+...|..++..+.+.|+.++|..+|++.... + ...|...+......|+.+.+..+++++
T Consensus 411 ~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 411 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998874 556889999999999999999999999998742 2 347888888888999999999999998
Q ss_pred HHC
Q 036263 255 QKG 257 (305)
Q Consensus 255 ~~~ 257 (305)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 87
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.92 E-value=5.7e-07 Score=78.00 Aligned_cols=148 Identities=13% Similarity=0.038 Sum_probs=90.8
Q ss_pred CChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCc----------
Q 036263 112 GRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANV---------- 175 (305)
Q Consensus 112 g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~---------- 175 (305)
|+.++|.+.+++... ..++..+...+...|++++|...+++..+. .| +..++..+...|...
T Consensus 227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~ 304 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLREN 304 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344555555554422 334666666777777777777777766553 34 344555554444321
Q ss_pred ---------CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cchh----hHHHHHH-HHH
Q 036263 176 ---------RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLV----SWNSIIV-GFA 239 (305)
Q Consensus 176 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~li~-~~~ 239 (305)
+..+.|...++...+.+ +.+...+..+...|...|++++|...|++..+ ++.. .+..+.. .+.
T Consensus 305 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 305 GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383 (472)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 12344555565555554 44556677888899999999999999998763 3221 2222222 345
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH
Q 036263 240 VNGFVGEALEYFNLMQKGVFKTDEV 264 (305)
Q Consensus 240 ~~g~~~~a~~~~~~m~~~g~~p~~~ 264 (305)
..|++++|...|++..+ +.|+..
T Consensus 384 ~~~~~~~Ai~~y~kal~--i~~~~~ 406 (472)
T 4g1t_A 384 QMKCEDKAIHHFIEGVK--INQKSR 406 (472)
T ss_dssp TSSCHHHHHHHHHHHHH--SCCCCH
T ss_pred HCCCHHHHHHHHHHHHh--cCcccH
Confidence 78999999999999888 556643
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=1e-07 Score=73.41 Aligned_cols=159 Identities=9% Similarity=0.019 Sum_probs=111.7
Q ss_pred HHHHHHhcCChHHHHHHHHhcCc-----cccHHH----------------HHHHHHcCCChHHHHHHHHHHHHcCCCC-C
Q 036263 104 LLDMYAKFGRMDLATVVFDVMRG-----CDFWTA----------------LLNGFVKRDYFEEALEYFRVMQISGVEP-D 161 (305)
Q Consensus 104 ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~g~~p-~ 161 (305)
....+.+.|++++|...|++... ...|.. +...+.+.|++++|...|++..+. .| +
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCC
Confidence 34456778999999999888754 334555 778888888888888888887764 44 5
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC--hHHHHHHHHhcccCchh--hHHHHHHH
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC--IEFARQVFQRMHKRTLV--SWNSIIVG 237 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~--~~~~li~~ 237 (305)
...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|+ ...+...++....++.. .+.....+
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 7778888888888888888888888888875 5567778887777765543 44556666666655443 33344555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036263 238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267 (305)
Q Consensus 238 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 267 (305)
+...|++++|...|++..+ ..|+.....
T Consensus 167 ~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 6667888888888888877 457654433
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.88 E-value=2.3e-07 Score=74.02 Aligned_cols=161 Identities=9% Similarity=-0.018 Sum_probs=127.6
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCC--CCChhHHHH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPD----YLTIISVLNVCANVRTLGIGLWMHRYVPKQDF--KDNVRVCNT 202 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 202 (305)
.+..+...+.+.|++++|...|++..+. .|+ ...+..+..++...|++++|...|+...+... +.....+..
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3556677888999999999999999875 343 56788888999999999999999999988741 122456778
Q ss_pred HHHHHHh--------cCChHHHHHHHHhccc--Cc-hhhH-----------------HHHHHHHHhcCChHHHHHHHHHH
Q 036263 203 LMDVYSR--------FGCIEFARQVFQRMHK--RT-LVSW-----------------NSIIVGFAVNGFVGEALEYFNLM 254 (305)
Q Consensus 203 li~~~~~--------~g~~~~a~~~~~~~~~--~~-~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m 254 (305)
+..++.. .|++++|...|+++.+ |+ .... ..+...|...|++++|...|++.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888 9999999999999874 32 2333 45678899999999999999999
Q ss_pred HHCCCCC--CHHHHHHHHHHHhcc----------CcHHHHHHHHHHHHH
Q 036263 255 QKGVFKT--DEVSFTGALTACSHA----------GLIEDGLQYFDIMKK 291 (305)
Q Consensus 255 ~~~g~~p--~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~ 291 (305)
.+..... ....+..+..++... |++++|...|+.+.+
T Consensus 175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 8853211 235677777788766 899999999999883
No 90
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=8.2e-08 Score=71.87 Aligned_cols=149 Identities=13% Similarity=0.036 Sum_probs=72.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hcCcC
Q 036263 103 ALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV-CANVR 176 (305)
Q Consensus 103 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~ 176 (305)
.+...+.+.|++++|...|++... ...+..+...+...|++++|...+++.... .|+...+...... +...+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhc
Confidence 334445566666666666666543 334555666666666666666666655432 2222221111101 11111
Q ss_pred ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc---hhhHHHHHHHHHhcCChHHHHHHH
Q 036263 177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT---LVSWNSIIVGFAVNGFVGEALEYF 251 (305)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~a~~~~ 251 (305)
....+...++...+.. +.+...+..+..++...|++++|...|+++.+ |+ ...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223444555554443 33345555555555555555555555555442 21 234555555555555555555555
Q ss_pred HHH
Q 036263 252 NLM 254 (305)
Q Consensus 252 ~~m 254 (305)
++.
T Consensus 168 ~~a 170 (176)
T 2r5s_A 168 RRQ 170 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.87 E-value=8.9e-08 Score=73.81 Aligned_cols=160 Identities=9% Similarity=-0.011 Sum_probs=121.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263 133 LLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIIS----------------VLNVCANVRTLGIGLWMHRYVPKQDFKD 195 (305)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (305)
....+...|++++|...|++..+. .|+ ...+.. +..++...|++++|...+++..+.. +-
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 445677899999999999998774 564 445556 8888999999999999999999886 66
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036263 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGF--VGEALEYFNLMQKGVFKTDEVSFTGAL 270 (305)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li 270 (305)
+...+..+..+|...|++++|...|++..+ | +...|..+...|...|+ .+.+...++.... ..|....+....
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g 164 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDG 164 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence 788999999999999999999999999874 4 66788888888766654 3445555555432 233333444455
Q ss_pred HHHhccCcHHHHHHHHHHHHHHhCCCCCcc
Q 036263 271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIE 300 (305)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 300 (305)
.++...|++++|...|+... .+.|+.+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al---~l~P~~~ 191 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVI---LRFPSTE 191 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHT---TTSCCHH
T ss_pred HHHHHccCHHHHHHHHHHHH---HhCCCHH
Confidence 56677899999999999887 6667643
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=2.6e-07 Score=72.07 Aligned_cols=173 Identities=8% Similarity=-0.039 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHH
Q 036263 99 MVSTALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY----LTII 166 (305)
Q Consensus 99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~ 166 (305)
..+..+...+.+.|++++|...|+++.. ...+..+..++.+.|++++|...|++..+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444555666677777777777776643 124556666777777777777777776654 2321 1232
Q ss_pred HHHHHhc------------------CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCch
Q 036263 167 SVLNVCA------------------NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228 (305)
Q Consensus 167 ~ll~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 228 (305)
.+..++. ..|+.++|...|+.+.+.. +-+...+....... .+.....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~--------------~~~~~~~ 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV--------------FLKDRLA 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH--------------HHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH--------------HHHHHHH
Confidence 2333332 2345555555555555442 22222221111100 0000000
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD----EVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 229 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.....+...|...|++++|...|+++.+.. |+ ...+..+..++.+.|++++|.+.++.+.
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 111345667889999999999999998853 43 2567788899999999999999999887
No 93
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=2.7e-07 Score=75.09 Aligned_cols=160 Identities=8% Similarity=-0.001 Sum_probs=118.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCC-CC----hhHHH
Q 036263 132 ALLNGFVKRDYFEEALEYFRVMQISG-VEPDY----LTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-DN----VRVCN 201 (305)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 201 (305)
..+..+...|++++|..++++..+.. ..|+. ..+..+...+...+++++|...++...+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888899999999998876532 22332 23345667777888999999999988774322 22 33688
Q ss_pred HHHHHHHhcCChHHHHHHHHhccc------C----chhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHH
Q 036263 202 TLMDVYSRFGCIEFARQVFQRMHK------R----TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG----VFKTD-EVSF 266 (305)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~ 266 (305)
.+..+|...|++++|...|+++.+ . ...+|..+...|...|++++|.+.+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999888762 1 2347888899999999999999998886542 32232 5778
Q ss_pred HHHHHHHhccC-cHHHHHHHHHHHHH
Q 036263 267 TGALTACSHAG-LIEDGLQYFDIMKK 291 (305)
Q Consensus 267 ~~li~~~~~~g-~~~~a~~~~~~m~~ 291 (305)
..+..++.+.| .+++|.+.++....
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888999999 46999998887763
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=3.4e-08 Score=90.08 Aligned_cols=164 Identities=5% Similarity=-0.100 Sum_probs=137.6
Q ss_pred HhcCChHHHHHHHHhcC--------c-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcC
Q 036263 109 AKFGRMDLATVVFDVMR--------G-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCAN 174 (305)
Q Consensus 109 ~~~g~~~~a~~~~~~~~--------~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 174 (305)
...|++++|++.+++.. . ...+..+...+...|++++|.+.|++..+. .| +...+..+-.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 67899999999998876 2 456888889999999999999999998875 44 57788889999999
Q ss_pred cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHH
Q 036263 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYF 251 (305)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~ 251 (305)
.|++++|...|++..+.. +.+...|..+..+|.+.|++++ .+.|++..+ | +...|..+..++...|++++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999886 5578889999999999999999 999999874 3 6688999999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCc
Q 036263 252 NLMQKGVFKTD-EVSFTGALTACSHAGL 278 (305)
Q Consensus 252 ~~m~~~g~~p~-~~~~~~li~~~~~~g~ 278 (305)
++..+. .|+ ...+..+..++...++
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 998874 465 4567777777766554
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.83 E-value=1.1e-06 Score=71.11 Aligned_cols=170 Identities=8% Similarity=-0.047 Sum_probs=121.1
Q ss_pred HHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263 117 ATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVE-PDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190 (305)
Q Consensus 117 a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 190 (305)
|...|++... ...+..+..++...|++++|++++.+....|-. -+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666543 223456778888899999999999987655432 3567788889999999999999999999977
Q ss_pred cCCCC-----ChhHHHHHHHH--HHh--cCChHHHHHHHHhcccC--chhhHHHHHHHHHhcCChHHHHHHHHHHHHC--
Q 036263 191 QDFKD-----NVRVCNTLMDV--YSR--FGCIEFARQVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG-- 257 (305)
Q Consensus 191 ~~~~~-----~~~~~~~li~~--~~~--~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 257 (305)
. .| +..+...+..+ ... .++.++|..+|+++.+. +..+-..++.++...|++++|.+.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 6 45 34555555555 333 34899999999998753 3234445555899999999999999876553
Q ss_pred ---C----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 258 ---V----FKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 258 ---g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+ -+-|..++..+|......|+ +|.++++++.
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~ 280 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV 280 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence 1 02356677555555555676 8888888887
No 96
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=1.5e-07 Score=83.98 Aligned_cols=145 Identities=7% Similarity=-0.099 Sum_probs=104.0
Q ss_pred cCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHH
Q 036263 111 FGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWM 184 (305)
Q Consensus 111 ~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~ 184 (305)
.|++++|...|++..+ ...|..+...+...|++++|.+.+++..+. .| +...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3677888888887754 455778888888888999999888887764 44 467788888888888999999988
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhc---CChHHHHHHHHHHHHCC
Q 036263 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVN---GFVGEALEYFNLMQKGV 258 (305)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g 258 (305)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+ .+...+..+...+... |++++|.+.+++..+.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 88888775 55677888888888888999999888888763 3567788888888888 88888888888887754
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=7.5e-08 Score=87.78 Aligned_cols=167 Identities=10% Similarity=-0.049 Sum_probs=135.0
Q ss_pred HhcCChhHHHHHHHHHHhC------CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---
Q 036263 56 CRSGCILEAALEFTRMRLY------GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--- 126 (305)
Q Consensus 56 ~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--- 126 (305)
...|++++|++.|++..+. ...|+ +...+..+..++.+.|++++|...|+++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-----------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-----------------SVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-----------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-----------------chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 6789999999999998721 12333 334456667778999999999999998855
Q ss_pred --cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHH
Q 036263 127 --CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203 (305)
Q Consensus 127 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 203 (305)
...|..+...+...|++++|.+.|++..+. .| +...+..+..++...|++++ ...|++..+.+ +.+...|..+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~l 540 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGL 540 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHH
Confidence 456888889999999999999999998775 45 56778889999999999999 99999999876 5678899999
Q ss_pred HHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCC
Q 036263 204 MDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGF 243 (305)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 243 (305)
..+|.+.|++++|.+.|++..+ | +...|..+..++...++
T Consensus 541 g~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999985 3 35677777777766554
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=2.8e-07 Score=71.88 Aligned_cols=140 Identities=11% Similarity=0.032 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCc-----c---ccHHHHHHHHHc------------------CCChHHHHHHHHH
Q 036263 99 MVSTALLDMYAKFGRMDLATVVFDVMRG-----C---DFWTALLNGFVK------------------RDYFEEALEYFRV 152 (305)
Q Consensus 99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~---~~~~~li~~~~~------------------~g~~~~a~~~~~~ 152 (305)
..+..+..++.+.|++++|...|+++.+ . ..+..+..++.. .|++++|...|++
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 5678888999999999999999998854 1 134444444443 5789999999999
Q ss_pred HHHcCCCCCHH-HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cch-
Q 036263 153 MQISGVEPDYL-TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTL- 228 (305)
Q Consensus 153 m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~- 228 (305)
..+. .|+.. ....... ...+...+ ......+...|.+.|++++|...|+++.+ |+.
T Consensus 122 ~l~~--~P~~~~a~~a~~~----------l~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 122 LVRG--YPNSQYTTDATKR----------LVFLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ 181 (225)
T ss_dssp HHTT--CTTCTTHHHHHHH----------HHHHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHH--CcCChhHHHHHHH----------HHHHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence 8774 45432 2211110 00111111 11223556788899999999999999874 332
Q ss_pred ---hhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036263 229 ---VSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258 (305)
Q Consensus 229 ---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 258 (305)
..+..+..+|.+.|++++|.+.++.+...+
T Consensus 182 ~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 182 ATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 467888999999999999999999988764
No 99
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.81 E-value=5.2e-07 Score=75.84 Aligned_cols=227 Identities=11% Similarity=0.006 Sum_probs=163.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---
Q 036263 50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--- 126 (305)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--- 126 (305)
..-..+...|++++|...+++.....-..+.... ...+..+...+...|++++|...+++...
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 84 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSR--------------IVATSVLGEVLHCKGELTRSLALMQQTEQMAR 84 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHH--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHH--------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3344566789999999999998875311111111 12235566778889999999999988754
Q ss_pred --------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc
Q 036263 127 --------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVE--P-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ 191 (305)
Q Consensus 127 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 191 (305)
..++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.
T Consensus 85 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 85 QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 122566778899999999999999887543 222 3 2445667778889999999999999988764
Q ss_pred CCC----CChhHHHHHHHHHHhcCChHHHHHHHHhccc----Cch-hhHH-----HHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 192 DFK----DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----RTL-VSWN-----SIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 192 ~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
... .....+..+...+...|++++|...+++... ++. ..+. ..+..+...|++++|...+++....
T Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 165 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 321 1245678888999999999999999998752 211 1222 2334477999999999999998764
Q ss_pred CCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 258 VFKT---DEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 258 g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
...+ ....+..+...+...|++++|...++...
T Consensus 245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3221 12356677788999999999999999876
No 100
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=3.7e-07 Score=70.22 Aligned_cols=122 Identities=11% Similarity=-0.014 Sum_probs=80.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263 131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210 (305)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 210 (305)
..+...+...|++++|...|++. +.|+...+..+...+...|++++|...++...+.. +.+...+..+..+|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 34455566667777777666654 24566666677777777777777777777766654 44566677777777777
Q ss_pred CChHHHHHHHHhccc--C-----------------chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 211 GCIEFARQVFQRMHK--R-----------------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 211 g~~~~a~~~~~~~~~--~-----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
|++++|...|++..+ | ....+..+..+|...|++++|.+.|++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 777777777776653 1 1256667777777777777777777777664
No 101
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.78 E-value=1.2e-05 Score=69.68 Aligned_cols=35 Identities=9% Similarity=-0.160 Sum_probs=22.2
Q ss_pred chHhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCC
Q 036263 44 TTVQWTSSISRHCRSG-----CILEAALEFTRMRLYGTNP 78 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p 78 (305)
+...+..+-..+...+ ++++|+..|++..+.|...
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~ 107 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN 107 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH
Confidence 5556666666555555 7789999999988876433
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=3.3e-07 Score=75.13 Aligned_cols=211 Identities=9% Similarity=-0.012 Sum_probs=148.2
Q ss_pred cCChhHHHHHHHHHHhCCC------CCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----
Q 036263 58 SGCILEAALEFTRMRLYGT------NPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG----- 126 (305)
Q Consensus 58 ~~~~~~a~~~~~~m~~~g~------~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----- 126 (305)
.|++++|.+++++..+..- .++ |... ...|......|...|++++|...|.+...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~---~~~A-----------~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~ 69 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPD---YDSA-----------ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN 69 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCC---HHHH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCC---HHHH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 4667778887777654210 111 1111 12456666778889999999999887744
Q ss_pred ------cccHHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCC-
Q 036263 127 ------CDFWTALLNGFVKRDYFEEALEYFRVMQISG---VEPD--YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK- 194 (305)
Q Consensus 127 ------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~- 194 (305)
..+|+.+...|...|++++|...|++..+.- -.|. ..++..+-..|.. |++++|...+++..+....
T Consensus 70 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~ 148 (307)
T 2ifu_A 70 RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE 148 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Confidence 3468889999999999999999998765421 1222 4577888888888 9999999999987653211
Q ss_pred --C--ChhHHHHHHHHHHhcCChHHHHHHHHhcccC-----c----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--
Q 036263 195 --D--NVRVCNTLMDVYSRFGCIEFARQVFQRMHKR-----T----LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF-- 259 (305)
Q Consensus 195 --~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-- 259 (305)
+ ...++..+...|.+.|++++|...|++..+. + ...+..+...+...|++++|...|++.. ...
T Consensus 149 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 149 ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 1 1467888999999999999999999988741 1 2366677778888899999999999987 421
Q ss_pred CCC--HHHHHHHHHHHhccCcHHHHHHH
Q 036263 260 KTD--EVSFTGALTACSHAGLIEDGLQY 285 (305)
Q Consensus 260 ~p~--~~~~~~li~~~~~~g~~~~a~~~ 285 (305)
... ......++.++ ..|+.+.+.++
T Consensus 228 ~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 228 SGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp TTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 111 12355556655 56777666654
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.77 E-value=1.2e-07 Score=70.93 Aligned_cols=158 Identities=8% Similarity=-0.016 Sum_probs=121.9
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHH-
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV- 206 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~- 206 (305)
.+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++...+.. |+...+......
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 3456677888999999999999987653 44 57788889999999999999999999987764 254433332212
Q ss_pred HHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHH
Q 036263 207 YSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDG 282 (305)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a 282 (305)
+...+...+|...+++..+ | +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2222333457778887763 4 57889999999999999999999999998865332 356788899999999999999
Q ss_pred HHHHHHHH
Q 036263 283 LQYFDIMK 290 (305)
Q Consensus 283 ~~~~~~m~ 290 (305)
...|+...
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=1.2e-06 Score=67.55 Aligned_cols=159 Identities=10% Similarity=-0.026 Sum_probs=117.9
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC----ChhHHHHHHHHHhhcCCCCChhHHHH
Q 036263 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR----TLGIGLWMHRYVPKQDFKDNVRVCNT 202 (305)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ 202 (305)
...+..+...+...+++++|+..|++..+.| +...+..+-..|.. + +.++|...|+...+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3446667777777888888888888887755 45566666666766 6 7888999988887765 4666777
Q ss_pred HHHHHHh----cCChHHHHHHHHhcccCc-----hhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036263 203 LMDVYSR----FGCIEFARQVFQRMHKRT-----LVSWNSIIVGFAV----NGFVGEALEYFNLMQKGVFKTDEVSFTGA 269 (305)
Q Consensus 203 li~~~~~----~g~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 269 (305)
+...|.. .+++++|.+.|++..+.+ ...+..|-..|.. .+++++|..+|++..+. ..+...+..|
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~L 168 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWA 168 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHH
Confidence 7777776 788999999998887532 5788888888888 78899999999998775 2334455566
Q ss_pred HHHHhcc-C-----cHHHHHHHHHHHHHHhCC
Q 036263 270 LTACSHA-G-----LIEDGLQYFDIMKKIYRV 295 (305)
Q Consensus 270 i~~~~~~-g-----~~~~a~~~~~~m~~~~~~ 295 (305)
-..|... | ++++|..+|+... ..|.
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~-~~g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSC-LEGF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHH-HHTC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHH-HcCC
Confidence 6666543 2 8899999998877 5553
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.76 E-value=9.4e-08 Score=69.59 Aligned_cols=135 Identities=7% Similarity=-0.057 Sum_probs=73.7
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 036263 138 VKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216 (305)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 216 (305)
...|++++|+..+..... ..|+ ...+..+-..|.+.|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|
T Consensus 8 ~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 334555555555554432 1232 2334445555666666666666666666554 44566666666666666666666
Q ss_pred HHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 036263 217 RQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEY-FNLMQKGVFKT-DEVSFTGALTACSHAG 277 (305)
Q Consensus 217 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~p-~~~~~~~li~~~~~~g 277 (305)
...|++..+ | +...|..+...|...|++++|.+. +++..+. .| +...|......+...|
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 666666552 2 445666666666666666554443 3555552 23 3444544444444444
No 106
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=5.8e-07 Score=73.05 Aligned_cols=161 Identities=8% Similarity=-0.018 Sum_probs=118.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCC---CCC--hhH
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPD-----YLTIISVLNVCANVRTLGIGLWMHRYVPKQDF---KDN--VRV 199 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~ 199 (305)
+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...++...+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 44567778889999999999987765422211 12234455567788899999999988765321 111 457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccc-----Cc-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHH
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHK-----RT-----LVSWNSIIVGFAVNGFVGEALEYFNLMQKG----VFKT-DEV 264 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ 264 (305)
|+.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+. +... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 88999999999999999999988761 22 258888999999999999999999987653 1111 156
Q ss_pred HHHHHHHHHhccCcHHHH-HHHHHHHH
Q 036263 265 SFTGALTACSHAGLIEDG-LQYFDIMK 290 (305)
Q Consensus 265 ~~~~li~~~~~~g~~~~a-~~~~~~m~ 290 (305)
+|..+..++.+.|++++| ...++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 788888899999999999 77777654
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=1.9e-07 Score=83.39 Aligned_cols=126 Identities=6% Similarity=-0.063 Sum_probs=81.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036263 97 NVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV 171 (305)
Q Consensus 97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 171 (305)
+...+..+...+.+.|++++|...|++..+ ...|..+...+...|++++|.+.+++..+.. +-+...+..+..+
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 100 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHA 100 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455666666666777777777777766643 3446666666777777777777776665542 2245566666666
Q ss_pred hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhcc
Q 036263 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF---GCIEFARQVFQRMH 224 (305)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~ 224 (305)
+...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..
T Consensus 101 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 101 LEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 777777777777777666654 34456666666666666 67777777766665
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.74 E-value=2.5e-07 Score=75.13 Aligned_cols=159 Identities=9% Similarity=-0.063 Sum_probs=118.0
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH-HHHHH
Q 036263 128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC-NTLMD 205 (305)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~ 205 (305)
..+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++.+.+.. |+.... .....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 34566777788889999999998887764 45 56777888888888999999999888887664 343322 23333
Q ss_pred HHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHH
Q 036263 206 VYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIED 281 (305)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 281 (305)
.+.+.++.++|...+++... | +...+..+...+...|++++|...|+++.+..... +...+..+...+...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 46677777888888887763 3 56788888888899999999999998888753211 25678888888888888888
Q ss_pred HHHHHHHHH
Q 036263 282 GLQYFDIMK 290 (305)
Q Consensus 282 a~~~~~~m~ 290 (305)
|...++...
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.73 E-value=1.2e-07 Score=77.75 Aligned_cols=169 Identities=7% Similarity=-0.108 Sum_probs=126.4
Q ss_pred CChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcCcCChhHHHHHHH
Q 036263 112 GRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-DYLTIISVLNVCANVRTLGIGLWMHR 186 (305)
Q Consensus 112 g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~ 186 (305)
++++.|...| +.....|...|++++|...|.+..+. |-.+ -..+|+.+...|...|++++|...++
T Consensus 30 ~~~~~A~~~~---------~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 100 (307)
T 2ifu_A 30 PDYDSAASEY---------AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIE 100 (307)
T ss_dssp CCHHHHHHHH---------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred CCHHHHHHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4555555554 44567888899999999999877542 2111 14578888899999999999999999
Q ss_pred HHhhc----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcccC---------chhhHHHHHHHHHhcCChHHHHHHHH
Q 036263 187 YVPKQ----DFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---------TLVSWNSIIVGFAVNGFVGEALEYFN 252 (305)
Q Consensus 187 ~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~ 252 (305)
+..+. |-.. ...++..+...|.. |++++|...|++..+- ...+++.+...|...|++++|...|+
T Consensus 101 ~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 179 (307)
T 2ifu_A 101 KASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQ 179 (307)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 87653 2111 24678888889988 9999999999987631 14678889999999999999999999
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 253 LMQKG----VFKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 253 ~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+..+. +..++ ...+..+..++...|++++|...|++..
T Consensus 180 ~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 180 KEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 98763 22222 2356667777888899999999998765
No 110
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.72 E-value=9.3e-07 Score=71.85 Aligned_cols=157 Identities=8% Similarity=-0.090 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCC--HH
Q 036263 100 VSTALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQISG---VEPD--YL 163 (305)
Q Consensus 100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~~ 163 (305)
.+...+..+...|++++|.+.++...+ ...+..+...+...|++++|...+++..+.. ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344567778899999999999876532 1224456667788899999999999876532 1222 45
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHhh---cC-CCC--ChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-------ch
Q 036263 164 TIISVLNVCANVRTLGIGLWMHRYVPK---QD-FKD--NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-------TL 228 (305)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-------~~ 228 (305)
+++.+...|...|++++|...+++..+ .. -.+ ...++..+...|.+.|++++|...+++..+ + -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 888999999999999999999998873 21 111 126889999999999999999999998763 1 15
Q ss_pred hhHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 036263 229 VSWNSIIVGFAVNGFVGEA-LEYFNLMQK 256 (305)
Q Consensus 229 ~~~~~li~~~~~~g~~~~a-~~~~~~m~~ 256 (305)
.+|..+...|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 777777543
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.72 E-value=6.7e-07 Score=72.54 Aligned_cols=151 Identities=7% Similarity=-0.085 Sum_probs=115.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHhcCc
Q 036263 102 TALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS-VLNVCANV 175 (305)
Q Consensus 102 ~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~ 175 (305)
..+...+.+.|++++|...|++... ...+..+...+.+.|++++|...+++.... .|+...... ....+...
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhh
Confidence 3444557778888888888887743 456778888888999999999999887654 455433322 22335677
Q ss_pred CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C---chhhHHHHHHHHHhcCChHHHHHH
Q 036263 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R---TLVSWNSIIVGFAVNGFVGEALEY 250 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~a~~~ 250 (305)
++.++|...+++..+.. +.+...+..+...|...|++++|...|+++.+ | +...+..+...|...|+.++|...
T Consensus 199 ~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 199 AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence 78888888888888875 66788889999999999999999999998874 3 256788899999999999999888
Q ss_pred HHHHH
Q 036263 251 FNLMQ 255 (305)
Q Consensus 251 ~~~m~ 255 (305)
+++..
T Consensus 278 ~r~al 282 (287)
T 3qou_A 278 YRRQL 282 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=2.1e-06 Score=69.74 Aligned_cols=154 Identities=10% Similarity=-0.049 Sum_probs=119.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----HHH
Q 036263 101 STALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVE-PD----YLT 164 (305)
Q Consensus 101 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~t 164 (305)
+...+..+.+.|++++|..+++...+ ...+..+...+...|++++|...|++..+.... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 33446788899999999999998754 112345667777888999999999998874222 22 346
Q ss_pred HHHHHHHhcCcCChhHHHHHHHHHhh----c-CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcccC---------chh
Q 036263 165 IISVLNVCANVRTLGIGLWMHRYVPK----Q-DFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---------TLV 229 (305)
Q Consensus 165 ~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~ 229 (305)
++.+...|...|++++|...+++..+ . +..+ ...++..+...|.+.|++++|...+++..+- -..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 89999999999999999999999874 1 2122 2457889999999999999999999987631 146
Q ss_pred hHHHHHHHHHhcCC-hHHHHHHHHHH
Q 036263 230 SWNSIIVGFAVNGF-VGEALEYFNLM 254 (305)
Q Consensus 230 ~~~~li~~~~~~g~-~~~a~~~~~~m 254 (305)
+|..+..+|...|+ +++|.+.+++.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 88889999999995 69999988774
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=9.6e-07 Score=67.84 Aligned_cols=123 Identities=10% Similarity=0.010 Sum_probs=104.6
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHh
Q 036263 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAV 240 (305)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 240 (305)
.+..+...+...|++++|...+++.. .|+...+..+..+|.+.|++++|...|++..+ .+...|..+...|..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34556667788999999999998874 56888999999999999999999999999874 366789999999999
Q ss_pred cCChHHHHHHHHHHHHCCC--------------CC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 241 NGFVGEALEYFNLMQKGVF--------------KT-DEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 241 ~g~~~~a~~~~~~m~~~g~--------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.|++++|.+.|++..+... .| +...+..+..++.+.|++++|.+.|+...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999999999988531 11 22677888899999999999999999887
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.68 E-value=1.4e-06 Score=63.38 Aligned_cols=104 Identities=16% Similarity=0.018 Sum_probs=82.7
Q ss_pred CCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHH
Q 036263 158 VEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNS 233 (305)
Q Consensus 158 ~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ 233 (305)
+.|+ ...+..+-..+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|...|++..+ | +...|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4553 4567777778888889999999998888876 56788888888888889999999998888863 3 5678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036263 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264 (305)
Q Consensus 234 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 264 (305)
+..+|...|++++|...|++..+. .|+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 888888999999999998888874 46553
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.68 E-value=8.8e-08 Score=69.74 Aligned_cols=136 Identities=6% Similarity=-0.093 Sum_probs=98.7
Q ss_pred HHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCCh
Q 036263 105 LDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTL 178 (305)
Q Consensus 105 l~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~ 178 (305)
...+...|++++|+..++.... ...+..+...|.+.|++++|.+.|++..+. .| +..+|..+..++...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 3445566788888888877754 445667888888888899988888887764 45 577888888888888888
Q ss_pred hHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHH-HHhccc--C-chhhHHHHHHHHHhcCC
Q 036263 179 GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV-FQRMHK--R-TLVSWNSIIVGFAVNGF 243 (305)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~--~-~~~~~~~li~~~~~~g~ 243 (305)
++|...|+...+.. +-+...|..+...|.+.|+.++|.+. +++..+ | +..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888888875 55677888888888888888766554 465542 3 55666666665555553
No 116
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.68 E-value=1.4e-06 Score=63.90 Aligned_cols=126 Identities=10% Similarity=0.009 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHH
Q 036263 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFA 239 (305)
Q Consensus 163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 239 (305)
..+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...+++..+ .+...|..+...+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345556666677777777777777776654 44567777777788888888888888877663 35567777788888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCcHHHHHHHHHHHH
Q 036263 240 VNGFVGEALEYFNLMQKGVFKTDEVSFT--GALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 240 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
..|++++|...+++..+.. +.+...+. .....+.+.|++++|++.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888877743 12334443 33334667788888888888765
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=1.7e-05 Score=64.58 Aligned_cols=215 Identities=8% Similarity=-0.090 Sum_probs=160.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhcCc-----c
Q 036263 55 HCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFG--RMDLATVVFDVMRG-----C 127 (305)
Q Consensus 55 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~-----~ 127 (305)
..+....++|+.+++.+.. +.|+..| +|+.--.++...| ++++++..++.+.. .
T Consensus 43 ~~~~e~s~~aL~~t~~~L~--~nP~~~t-----------------aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y 103 (306)
T 3dra_A 43 MKAEEYSERALHITELGIN--ELASHYT-----------------IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY 103 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHH--HCTTCHH-----------------HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC
T ss_pred HHcCCCCHHHHHHHHHHHH--HCcHHHH-----------------HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH
Confidence 3344444689999999987 4665443 3566666677778 99999999988844 3
Q ss_pred ccHHHHHHHH----HcC---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChh--HHHHHHHHHhhcCCCCChh
Q 036263 128 DFWTALLNGF----VKR---DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLG--IGLWMHRYVPKQDFKDNVR 198 (305)
Q Consensus 128 ~~~~~li~~~----~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~ 198 (305)
.+|+.--..+ ... +++++++++++.+.+.. +-+..+|+.--..+.+.|.++ ++.+.++.+.+.+ +-|-.
T Consensus 104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~s 181 (306)
T 3dra_A 104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNS 181 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHH
Confidence 3454433333 444 78999999999998753 236777777666667777777 9999999999987 56777
Q ss_pred HHHHHHHHHHhcCC------hHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHHH
Q 036263 199 VCNTLMDVYSRFGC------IEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGE-ALEYFNLMQKGV--FKTDEVSF 266 (305)
Q Consensus 199 ~~~~li~~~~~~g~------~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~~~ 266 (305)
.|+.-...+.+.++ ++++.+.++++.. .|...|+-+-..+.+.|+... +..+..+..+.+ -..+...+
T Consensus 182 AW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 182 AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 88777777777776 8889988888763 477889888888888888544 556777765533 13477889
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHH
Q 036263 267 TGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 267 ~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
..+...+.+.|+.++|.++++.+.
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999999999999999999987
No 118
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.66 E-value=2e-06 Score=74.46 Aligned_cols=152 Identities=11% Similarity=-0.002 Sum_probs=78.2
Q ss_pred cHHHHHHHHHcCC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc----CChhHHHHHHHHHhhcCCCCChhHHH
Q 036263 129 FWTALLNGFVKRD---YFEEALEYFRVMQISGVEPDYLTIISVLNVCANV----RTLGIGLWMHRYVPKQDFKDNVRVCN 201 (305)
Q Consensus 129 ~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 201 (305)
.+..|...|...| +.++|++.|++..+.| .++...+..+-..|... ++.++|...|+... . -+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 3444555555555 5556666665555544 23333333344444333 45566666666554 2 2334444
Q ss_pred HHHHH-H--HhcCChHHHHHHHHhcccC-chhhHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036263 202 TLMDV-Y--SRFGCIEFARQVFQRMHKR-TLVSWNSIIVGFAVNG-----FVGEALEYFNLMQKGVFKTDEVSFTGALTA 272 (305)
Q Consensus 202 ~li~~-~--~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 272 (305)
.+... | ...+++++|.+.|++..+. +...+..+...|. .| ++++|..+|++.. .| +...+..+-..
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~ 327 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQI 327 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHH
Confidence 44444 2 3455666666666665532 4445555555554 33 6666666666655 22 34444444444
Q ss_pred Hhc----cCcHHHHHHHHHHHH
Q 036263 273 CSH----AGLIEDGLQYFDIMK 290 (305)
Q Consensus 273 ~~~----~g~~~~a~~~~~~m~ 290 (305)
|.. ..++++|..+|+...
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa 349 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAA 349 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHH
T ss_pred HHCCCCCCcCHHHHHHHHHHHH
Confidence 444 236667777766665
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=1e-06 Score=62.00 Aligned_cols=98 Identities=7% Similarity=-0.026 Sum_probs=69.4
Q ss_pred CCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHH
Q 036263 158 VEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNS 233 (305)
Q Consensus 158 ~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ 233 (305)
+.|+ ...+...-..+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+ .+...|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3443 3456666667777777777777777777665 55677777777777777777777777777653 35567777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 036263 234 IIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 234 li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
+..+|...|++++|.+.|++..+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777777776
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.61 E-value=3.4e-06 Score=65.04 Aligned_cols=158 Identities=15% Similarity=0.022 Sum_probs=126.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCc---cccHHHHHHHHHcCC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036263 98 VMVSTALLDMYAKFGRMDLATVVFDVMRG---CDFWTALLNGFVKRD----YFEEALEYFRVMQISGVEPDYLTIISVLN 170 (305)
Q Consensus 98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 170 (305)
...+..|...|...+++++|...|++..+ ...+..|...|.. + ++++|..+|++..+.| +...+..+-.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 33445566677888999999999998855 4557777777777 6 8999999999987755 4566777777
Q ss_pred HhcC----cCChhHHHHHHHHHhhcCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHhccc--CchhhHHHHHHHHH
Q 036263 171 VCAN----VRTLGIGLWMHRYVPKQDFK-DNVRVCNTLMDVYSR----FGCIEFARQVFQRMHK--RTLVSWNSIIVGFA 239 (305)
Q Consensus 171 ~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~ 239 (305)
.|.. .+++++|...|++..+.|.. .+...+..|...|.. .++.++|...|++..+ .+...+..|...|.
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7776 88999999999999988621 126788888888988 8899999999999864 46777888888887
Q ss_pred hc-C-----ChHHHHHHHHHHHHCCC
Q 036263 240 VN-G-----FVGEALEYFNLMQKGVF 259 (305)
Q Consensus 240 ~~-g-----~~~~a~~~~~~m~~~g~ 259 (305)
.. | ++++|..+|++..+.|.
T Consensus 174 ~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 174 QGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 54 3 89999999999988874
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=2.1e-06 Score=62.89 Aligned_cols=126 Identities=10% Similarity=-0.014 Sum_probs=97.1
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (305)
.|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++...+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 46667778888888899888888876642 2357778888888889999999999999888875 556778888889999
Q ss_pred hcCChHHHHHHHHhccc--C-chhhHHH--HHHHHHhcCChHHHHHHHHHHHH
Q 036263 209 RFGCIEFARQVFQRMHK--R-TLVSWNS--IIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~~--~-~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
..|++++|...|++..+ | +...+.. ....+...|++++|.+.+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999988874 2 3344433 34447778899999988877543
No 122
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=6.6e-07 Score=68.09 Aligned_cols=146 Identities=14% Similarity=-0.005 Sum_probs=84.3
Q ss_pred hcCChHHHHH---HHHhcCc--cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcCcCChh
Q 036263 110 KFGRMDLATV---VFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-DYLTIISVLNVCANVRTLG 179 (305)
Q Consensus 110 ~~g~~~~a~~---~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~ 179 (305)
..|++++|.+ .+..-+. ...+..+...+...|++++|...+++..+. |..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 4443332 345666677777777777777777665441 1122 2445566666667777777
Q ss_pred HHHHHHHHHhhc----CCC--CChhHHHHHHHHHHhcCChHHHHHHHHhccc-----Cc----hhhHHHHHHHHHhcCCh
Q 036263 180 IGLWMHRYVPKQ----DFK--DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----RT----LVSWNSIIVGFAVNGFV 244 (305)
Q Consensus 180 ~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~ 244 (305)
+|...+++..+. +-. .....+..+...+...|++++|...+++..+ .+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777665442 101 1234456666667777777777777666542 11 12345566666677777
Q ss_pred HHHHHHHHHHH
Q 036263 245 GEALEYFNLMQ 255 (305)
Q Consensus 245 ~~a~~~~~~m~ 255 (305)
++|.+.+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776666544
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=1.5e-07 Score=76.19 Aligned_cols=186 Identities=9% Similarity=-0.043 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 036263 98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNV 171 (305)
Q Consensus 98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~ 171 (305)
...+..+...+.+.|++++|...|+.... ...|..+...+.+.|++++|...+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34566677778888999999999887743 455788888888999999999999887664 44 56778888888
Q ss_pred hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHH
Q 036263 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251 (305)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 251 (305)
+...|++++|...++...+.+ +.+...+...+....+..+.......-......+...... +..+ ..|++++|.+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-l~~l-~~~~~~~A~~~~ 158 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSY-LTRL-IAAERERELEEC 158 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHH-HHHH-HHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHH-HHHHHHHHHHHH
Confidence 889999999999888876643 1111111111111111111111111111111223333222 2333 368899999988
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHhcc-CcHHHHHHHHHHHH
Q 036263 252 NLMQKGVFKTDEVSFTGALT-ACSHA-GLIEDGLQYFDIMK 290 (305)
Q Consensus 252 ~~m~~~g~~p~~~~~~~li~-~~~~~-g~~~~a~~~~~~m~ 290 (305)
++..+. .|+......-+. .+.+. +.++++.++|+...
T Consensus 159 ~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 159 QRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp SGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred Hhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 887764 566544433333 33343 67889999998776
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=2.4e-06 Score=59.00 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHH
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGF 238 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 238 (305)
...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+ .+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3455566666666777777777777666553 34556666677777777777777777766653 3455666677777
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 036263 239 AVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 239 ~~~g~~~~a~~~~~~m~~~ 257 (305)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 7777777777777776664
No 125
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=1e-06 Score=67.03 Aligned_cols=154 Identities=10% Similarity=-0.062 Sum_probs=113.8
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc----CCC-CChhHHHHHHHHHHhcC
Q 036263 137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ----DFK-DNVRVCNTLMDVYSRFG 211 (305)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g 211 (305)
+...|++++|.++++.+.. .......++..+...+...|++++|...+++..+. +.. ....++..+...|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3467999999996655533 12235678888899999999999999999987652 222 23567888999999999
Q ss_pred ChHHHHHHHHhccc-----C-c----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhcc
Q 036263 212 CIEFARQVFQRMHK-----R-T----LVSWNSIIVGFAVNGFVGEALEYFNLMQKG----VFK-TDEVSFTGALTACSHA 276 (305)
Q Consensus 212 ~~~~a~~~~~~~~~-----~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~ 276 (305)
++++|.+.+++..+ + + ...+..+...+...|++++|...+++..+. +-. .-..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 99999999988763 2 2 345778888999999999999999987642 211 1123467778889999
Q ss_pred CcHHHHHHHHHHHHH
Q 036263 277 GLIEDGLQYFDIMKK 291 (305)
Q Consensus 277 g~~~~a~~~~~~m~~ 291 (305)
|++++|...+++...
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988763
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.56 E-value=6.7e-07 Score=66.73 Aligned_cols=118 Identities=9% Similarity=0.021 Sum_probs=90.2
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHH-HHhcCCh--H
Q 036263 138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV-YSRFGCI--E 214 (305)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 214 (305)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45677888888888776642 2356788888888888999999999998888765 4567777788888 7788888 9
Q ss_pred HHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 215 FARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 215 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
+|...+++..+ | +...+..+...|...|++++|...|++..+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999888763 3 5677888888899999999999999988874
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.54 E-value=2e-06 Score=68.70 Aligned_cols=177 Identities=10% Similarity=-0.051 Sum_probs=129.5
Q ss_pred hcCChHHHHHHHHhcCc-----cccHHHH-------HHHHHcCCChHHHHHHHHHHHHcCCCCC----------------
Q 036263 110 KFGRMDLATVVFDVMRG-----CDFWTAL-------LNGFVKRDYFEEALEYFRVMQISGVEPD---------------- 161 (305)
Q Consensus 110 ~~g~~~~a~~~~~~~~~-----~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~p~---------------- 161 (305)
..++...|.+.|.++.. ...|..+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57899999999998855 4456666 3555555555555554443322 2222
Q ss_pred ------HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCc-----hhh
Q 036263 162 ------YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT-----LVS 230 (305)
Q Consensus 162 ------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~ 230 (305)
..........+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. ...
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 1223445667788999999999999988765 443366667778999999999999999776532 346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD--EVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 231 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+.+.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77888999999999999999999875433254 3355666778889999999999999998
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=4.6e-06 Score=57.56 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=68.5
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (305)
.|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 35566667777777777777777776542 2356667777777778888888888888777664 455677777788888
Q ss_pred hcCChHHHHHHHHhccc
Q 036263 209 RFGCIEFARQVFQRMHK 225 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~~ 225 (305)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 88888888888877653
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.53 E-value=1.6e-06 Score=64.68 Aligned_cols=117 Identities=4% Similarity=-0.044 Sum_probs=96.8
Q ss_pred hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHH-HHhcCCh--H
Q 036263 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVG-FAVNGFV--G 245 (305)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~-~~~~g~~--~ 245 (305)
+...|++++|...++...+.. +.+...+..+...|...|++++|...|++..+ .+...+..+... +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 456788999999999988875 56788999999999999999999999999874 366778888888 7899998 9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 246 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+|...+++..+.. +-+...+..+...+...|++++|...++...
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999999998853 2356788888899999999999999999988
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=3e-06 Score=59.11 Aligned_cols=115 Identities=12% Similarity=-0.019 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHH
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGF 238 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 238 (305)
...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+ .+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4455556666666777777777777666653 34566666777777777777777777776653 2455666677777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036263 239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL 278 (305)
Q Consensus 239 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 278 (305)
...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 77777777777777766642 2244555555556555554
No 131
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.50 E-value=1.4e-05 Score=72.26 Aligned_cols=206 Identities=8% Similarity=0.003 Sum_probs=138.5
Q ss_pred HhHHHHHHHHHhcCChhHHH-HHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263 46 VQWTSSISRHCRSGCILEAA-LEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM 124 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 124 (305)
..|-.....+.+.|+.++|. .+|+..... + |. +...|-..+....+.|+++.|.++|+.+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~-P~-----------------s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC-I-PN-----------------SAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-C-TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-C-CC-----------------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444455556666664 666665542 2 22 2233455666778889999999999887
Q ss_pred Ccc---------------------------ccHHHHHHHHHcCCChHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHhcCc
Q 036263 125 RGC---------------------------DFWTALLNGFVKRDYFEEALEYFRVMQIS-G-VEPDYLTIISVLNVCANV 175 (305)
Q Consensus 125 ~~~---------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~ 175 (305)
.+. .+|-..+....+.|..+.|..+|....+. + ..+......+.+.-. ..
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-IS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hC
Confidence 541 14667777777788899999999888764 2 122333333333322 23
Q ss_pred CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C----chhhHHHHHHHHHhcCChHHHHH
Q 036263 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R----TLVSWNSIIVGFAVNGFVGEALE 249 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~ 249 (305)
++.+.|..+|+...+. ++-+...+...++.....|+.+.|..+|++... + ....|...+.--...|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4588999999988876 455667777888888888999999999998774 2 33577778888888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHh
Q 036263 250 YFNLMQKGVFKTDEVSFTGALTACS 274 (305)
Q Consensus 250 ~~~~m~~~g~~p~~~~~~~li~~~~ 274 (305)
+.+++.+. .|+......++.-|.
T Consensus 563 v~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 563 LEKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHH--STTCCHHHHHHHHTC
T ss_pred HHHHHHHh--CCCCcHHHHHHHHhc
Confidence 99998885 355555555555543
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.49 E-value=3.6e-06 Score=59.00 Aligned_cols=94 Identities=7% Similarity=0.065 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHH
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGF 238 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 238 (305)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+ .+...+..+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4455555555666666666666666655543 33455556666666666666666666665542 2345555666666
Q ss_pred HhcCChHHHHHHHHHHHH
Q 036263 239 AVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 239 ~~~g~~~~a~~~~~~m~~ 256 (305)
...|++++|.+.|++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 666666666666666555
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.47 E-value=8e-06 Score=57.16 Aligned_cols=112 Identities=6% Similarity=-0.042 Sum_probs=81.3
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (305)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 36667777777888888888888776542 2256777788888888888888888888887764 456778888888888
Q ss_pred hcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcC
Q 036263 209 RFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNG 242 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g 242 (305)
+.|++++|.+.|++..+ | +...+..+...+...|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 88888888888887763 2 3445555555555444
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.46 E-value=6.8e-06 Score=57.19 Aligned_cols=114 Identities=7% Similarity=-0.070 Sum_probs=83.1
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (305)
.+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 35566677777888888888888776542 2356677777778888888888888888887764 455777888888888
Q ss_pred hcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCCh
Q 036263 209 RFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFV 244 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 244 (305)
..|++++|...|++..+ | +...+..+...+...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888887763 3 456666666777666654
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.46 E-value=5.8e-06 Score=60.05 Aligned_cols=94 Identities=10% Similarity=-0.014 Sum_probs=83.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036263 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272 (305)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 272 (305)
+...+..+...+.+.|++++|...|++... | +...|..+..+|...|++++|...|++..+.. +-+...|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 456788888999999999999999999884 4 67889999999999999999999999998853 2256788889999
Q ss_pred HhccCcHHHHHHHHHHHH
Q 036263 273 CSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~ 290 (305)
+.+.|++++|...|+...
T Consensus 114 ~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 999999999999999988
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.43 E-value=1.5e-06 Score=62.94 Aligned_cols=99 Identities=11% Similarity=-0.099 Sum_probs=79.9
Q ss_pred CCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHH
Q 036263 158 VEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNS 233 (305)
Q Consensus 158 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ 233 (305)
+.| +...+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...|++... | +...|..
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 345 45566777778888899999999999888775 56778888888888999999999999988763 3 5677888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 036263 234 IIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 234 li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
+..+|...|++++|...|++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888889999999999999887764
No 137
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.43 E-value=6.7e-06 Score=57.76 Aligned_cols=101 Identities=12% Similarity=0.004 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc--------hhhHHH
Q 036263 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT--------LVSWNS 233 (305)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~--------~~~~~~ 233 (305)
.+..+-..+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|.+.+++..+ |+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666677777777777777776654 44566777777777777777777777776653 11 135666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036263 234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267 (305)
Q Consensus 234 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 267 (305)
+..++...|++++|.+.|++... ..||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 67777778888888888887766 345655443
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.42 E-value=6e-06 Score=68.53 Aligned_cols=128 Identities=9% Similarity=0.002 Sum_probs=92.0
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD--------------YLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192 (305)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 192 (305)
...|..+...+.+.|++++|...|++..+..-... ...|..+..++.+.|++++|...++...+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44577888888999999999999988876432111 4677777777778888888888888777765
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 036263 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEA-LEYFNLMQ 255 (305)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 255 (305)
+.+...|..+..+|...|++++|...|++..+ | +...+..+...+...|++++| ...++.|.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777888888888877777763 2 456677777777777777776 34555553
No 139
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.42 E-value=8.1e-06 Score=57.25 Aligned_cols=94 Identities=6% Similarity=-0.023 Sum_probs=75.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 209 (305)
+......+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|...++..++.+ +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 5566777888888888888888876642 2357788888888888899999998888888875 5667888888888999
Q ss_pred cCChHHHHHHHHhccc
Q 036263 210 FGCIEFARQVFQRMHK 225 (305)
Q Consensus 210 ~g~~~~a~~~~~~~~~ 225 (305)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999998888764
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=6.8e-06 Score=65.69 Aligned_cols=195 Identities=7% Similarity=-0.075 Sum_probs=129.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCH-hhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---------
Q 036263 57 RSGCILEAALEFTRMRLYGTNPSH-ITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--------- 126 (305)
Q Consensus 57 ~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------- 126 (305)
..++...|.+.|.+..+. .|+. ..|.-++.+ |+.+. .++.+.++..++...+.....
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~----g~~~~-------~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~ 84 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRC----GDTDR-------VTLFRAWYSRRNFGQLSGSVQISMSTLNAR 84 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHT----TCCCH-------HHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHc----cCCcH-------HHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence 689999999999999884 5542 333322211 11111 222222233333333333322
Q ss_pred ---ccc--------------HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHh
Q 036263 127 ---CDF--------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP 189 (305)
Q Consensus 127 ---~~~--------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 189 (305)
.+. +-.+...+...|++++|.++|+.+... .|+......+-..+.+.+++++|...|+...
T Consensus 85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 111 234667788899999999999888764 3544455566668899999999999998654
Q ss_pred hcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhccc-C-----chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036263 190 KQDFKDN--VRVCNTLMDVYSRFGCIEFARQVFQRMHK-R-----TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261 (305)
Q Consensus 190 ~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 261 (305)
+.. .|. ...+..+..++...|++++|.+.|++... + ..........++.+.|+.++|..+|+++... .|
T Consensus 163 ~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P 239 (282)
T 4f3v_A 163 KWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HP 239 (282)
T ss_dssp GCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SC
T ss_pred ccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 432 121 34678889999999999999999999863 2 2235666778889999999999999999985 46
Q ss_pred CHHHHHHH
Q 036263 262 DEVSFTGA 269 (305)
Q Consensus 262 ~~~~~~~l 269 (305)
+......|
T Consensus 240 ~~~~~~aL 247 (282)
T 4f3v_A 240 EPKVAAAL 247 (282)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 64444333
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.40 E-value=8.7e-06 Score=67.56 Aligned_cols=128 Identities=6% Similarity=-0.131 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC---------------hhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---------------VRVCNTLMDVYSRFGCIEFARQVFQRMHK 225 (305)
Q Consensus 161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (305)
+...+..+-..+.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|...+++..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35678888889999999999999999998875 223 58899999999999999999999999874
Q ss_pred ---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH-HHHHHHHH
Q 036263 226 ---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG-LQYFDIMK 290 (305)
Q Consensus 226 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 290 (305)
.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+.+++ ...++.|.
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999998853 23567888888899999999988 45666664
No 142
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=2.6e-05 Score=66.65 Aligned_cols=186 Identities=5% Similarity=-0.139 Sum_probs=137.6
Q ss_pred HHHHhcCChHHHHHHHHhcCc----------------------cccHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCCH
Q 036263 106 DMYAKFGRMDLATVVFDVMRG----------------------CDFWTALLNGFVKRDYFEEALEYFRVMQIS-GVEPDY 162 (305)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~----------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~ 162 (305)
..+.+.|++++|++.|..+.+ ...+..+...|...|++++|.+++...... +..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 346778999999999988743 112678899999999999999999887542 112222
Q ss_pred ----HHHHHHHHHhcCcCChhHHHHHHHHHhh----cCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhccc--------
Q 036263 163 ----LTIISVLNVCANVRTLGIGLWMHRYVPK----QDFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHK-------- 225 (305)
Q Consensus 163 ----~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------- 225 (305)
.+.+.+-..+...|+.+.+..+++.... .+..+ -..++..+...|...|++++|..++++...
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2233344455677889999998887653 22233 356788899999999999999999998752
Q ss_pred C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263 226 R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG--VFK-T-D--EVSFTGALTACSHAGLIEDGLQYFDIMKK 291 (305)
Q Consensus 226 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~-p-~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (305)
+ .+..|..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 3467889999999999999999999886542 121 2 1 24566777788899999999998887763
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.39 E-value=1.2e-06 Score=66.81 Aligned_cols=159 Identities=12% Similarity=-0.054 Sum_probs=71.5
Q ss_pred hcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHH
Q 036263 110 KFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM 184 (305)
Q Consensus 110 ~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 184 (305)
..|+++.+.+.++.-.. ...+..+...+...|++++|...|++..+. .|+...+... .... .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~---~ 82 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD---K 82 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH---H
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH---H
Confidence 34555555544443221 334556666777777777777777766553 1110000000 0000 0
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036263 185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261 (305)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 261 (305)
.. ......+..+..+|.+.|++++|...+++..+ .+...+..+..+|...|++++|...|++..+.. +-
T Consensus 83 ~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 154 (198)
T 2fbn_A 83 KK-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PN 154 (198)
T ss_dssp HH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TT
T ss_pred HH-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CC
Confidence 00 00124455555566666666666666665542 244555556666666666666666666655532 12
Q ss_pred CHHHHHHHHHHHhccCcHHHHH-HHHHHH
Q 036263 262 DEVSFTGALTACSHAGLIEDGL-QYFDIM 289 (305)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~-~~~~~m 289 (305)
+...+..+..++...++.+++. ..+..+
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHC---------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554 333333
No 144
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.38 E-value=6.1e-06 Score=57.52 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-c-------hhhHH
Q 036263 163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-T-------LVSWN 232 (305)
Q Consensus 163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~-------~~~~~ 232 (305)
..+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|...+++..+ | + ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 445556666677777777777777776654 44566777777777788888888887777653 1 2 56677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036263 233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272 (305)
Q Consensus 233 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 272 (305)
.+...+...|++++|.+.|++..+. .|+......+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 7888888888888888888888774 3565555444433
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.2e-05 Score=56.14 Aligned_cols=92 Identities=7% Similarity=-0.093 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHh
Q 036263 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAV 240 (305)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 240 (305)
.+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+ .+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44445555566666666666666665554 34456666666666666666666666666552 244556666666666
Q ss_pred cCChHHHHHHHHHHHH
Q 036263 241 NGFVGEALEYFNLMQK 256 (305)
Q Consensus 241 ~g~~~~a~~~~~~m~~ 256 (305)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 6666666666666655
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.37 E-value=1.8e-06 Score=62.54 Aligned_cols=94 Identities=11% Similarity=0.054 Sum_probs=55.1
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (305)
.+..+...+...|++++|...|++..... +.+...|..+-.++...|++++|...++...+.. +.+...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 34555556666666666666666655431 1245555555666666666666666666665554 344555666666666
Q ss_pred hcCChHHHHHHHHhcc
Q 036263 209 RFGCIEFARQVFQRMH 224 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~ 224 (305)
..|++++|...|++..
T Consensus 101 ~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQ 116 (148)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666666554
No 147
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.35 E-value=7.1e-06 Score=55.46 Aligned_cols=93 Identities=10% Similarity=-0.035 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 036263 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT--DEVSFTGALT 271 (305)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~ 271 (305)
...+..+...+...|++++|...|++..+ .+...|..+...+...|++++|.+.+++..+.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 44556666667777777777777776652 245666677777777777777777777776642 22 4566777777
Q ss_pred HHhcc-CcHHHHHHHHHHHH
Q 036263 272 ACSHA-GLIEDGLQYFDIMK 290 (305)
Q Consensus 272 ~~~~~-g~~~~a~~~~~~m~ 290 (305)
++.+. |++++|.+.++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHhCCHHHHHHHHHHHh
Confidence 77777 77777777777766
No 148
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=2.8e-06 Score=72.72 Aligned_cols=198 Identities=10% Similarity=-0.081 Sum_probs=140.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHh-hH----HHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc
Q 036263 52 ISRHCRSGCILEAALEFTRMRLYGTNPSHI-TF----VTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG 126 (305)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~----~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 126 (305)
...+.+.|++++|++.|.+..+........ .. ..... .....+..+...|.+.|++++|.+.+..+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRN-------EQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHH-------HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhh-------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356788999999999999998753221110 00 00000 0112356788889999999999999988754
Q ss_pred -----------cccHHHHHHHHHcCCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263 127 -----------CDFWTALLNGFVKRDYFEEALEYFRVMQI----SGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPK 190 (305)
Q Consensus 127 -----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 190 (305)
..+.+.+-..+...|+++.|..++++... .+..+. ..++..+...+...|++++|..+++.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 12234444555567899999999987643 233343 56778899999999999999999998754
Q ss_pred c--C--CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhccc-------C---chhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036263 191 Q--D--FKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHK-------R---TLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255 (305)
Q Consensus 191 ~--~--~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 255 (305)
. + -.+ ...++..++..|...|++++|..++++... | -...+..+...+...|++++|...|.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3 1 112 256788999999999999999999988763 1 12456677777888999999988877654
Q ss_pred H
Q 036263 256 K 256 (305)
Q Consensus 256 ~ 256 (305)
+
T Consensus 244 ~ 244 (434)
T 4b4t_Q 244 E 244 (434)
T ss_dssp H
T ss_pred H
Confidence 3
No 149
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.33 E-value=1.3e-05 Score=72.42 Aligned_cols=196 Identities=7% Similarity=-0.084 Sum_probs=145.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHH-HHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcC---------CCCC
Q 036263 97 NVMVSTALLDMYAKFGRMDLAT-VVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISG---------VEPD 161 (305)
Q Consensus 97 ~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---------~~p~ 161 (305)
...+|-.....+.+.|+.++|. .+|++... ...|-..+....+.|+++.|.++|+.+.... -.|+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 4456666677777888988886 88888743 3346667778888999999999999987631 0142
Q ss_pred ------------HHHHHHHHHHhcCcCChhHHHHHHHHHhhc-CCCCChhHHHHHHHHHHhc-CChHHHHHHHHhccc--
Q 036263 162 ------------YLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLMDVYSRF-GCIEFARQVFQRMHK-- 225 (305)
Q Consensus 162 ------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~-- 225 (305)
..+|...+....+.|..+.|..+|....+. + ......|......-.+. ++.+.|.++|+...+
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 336777778778889999999999999876 3 22344444433333344 458999999999875
Q ss_pred -CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHHh
Q 036263 226 -RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT--DEVSFTGALTACSHAGLIEDGLQYFDIMKKIY 293 (305)
Q Consensus 226 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 293 (305)
.+...|...+.-....|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.++.+.+.+..
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 355667788888888999999999999998864322 33577777777778999999999999998433
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=3.7e-05 Score=52.29 Aligned_cols=92 Identities=13% Similarity=-0.031 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHh
Q 036263 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAV 240 (305)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~ 240 (305)
.+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+ | +...+..+..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444455555555555555555555443 33455555555556666666666666655542 2 34455555666666
Q ss_pred cCChHHHHHHHHHHHH
Q 036263 241 NGFVGEALEYFNLMQK 256 (305)
Q Consensus 241 ~g~~~~a~~~~~~m~~ 256 (305)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 6666666666666555
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.29 E-value=1.4e-05 Score=56.44 Aligned_cols=95 Identities=8% Similarity=-0.169 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHH
Q 036263 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVG 237 (305)
Q Consensus 161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 237 (305)
+...+..+...+...|++++|...++...+.. +.+...|..+..+|...|++++|...+++..+ .+...|..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45666777777777777777777777776664 44566777777777777777777777777653 245667777777
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 036263 238 FAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 238 ~~~~g~~~~a~~~~~~m~~ 256 (305)
|...|++++|...|++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 7777888888777777665
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.29 E-value=9.3e-06 Score=58.14 Aligned_cols=95 Identities=11% Similarity=-0.150 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHH
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGF 238 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 238 (305)
...+..+...+...|++++|...|+...+.+ +.+...|..+..+|.+.|++++|...|++... .+...|..+..+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3445555666777788888888888777765 55677777777788888888888888877763 2556677777778
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 036263 239 AVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 239 ~~~g~~~~a~~~~~~m~~~ 257 (305)
...|++++|...|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888777663
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.27 E-value=2.5e-06 Score=64.96 Aligned_cols=91 Identities=11% Similarity=-0.021 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccc---Cc----------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036263 199 VCNTLMDVYSRFGCIEFARQVFQRMHK---RT----------------LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259 (305)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~---~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 259 (305)
.+..+...+.+.|++++|...|++..+ .+ ...|..+..+|...|++++|...+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 344444555555555555555555442 11 3678888999999999999999999988853
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 260 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+.+...+..+..++...|++++|...|+...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3467888889999999999999999999887
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.27 E-value=2.2e-05 Score=57.64 Aligned_cols=94 Identities=12% Similarity=-0.063 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHH
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGF 238 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 238 (305)
...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+ .+...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4455556666666677777777776666654 44566666677777777777777777766653 2456666667777
Q ss_pred HhcCChHHHHHHHHHHHH
Q 036263 239 AVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 239 ~~~g~~~~a~~~~~~m~~ 256 (305)
...|++++|...|++..+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 777777777777776655
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.24 E-value=5.8e-06 Score=58.10 Aligned_cols=101 Identities=11% Similarity=0.035 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC----HHHHH
Q 036263 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV--FKTD----EVSFT 267 (305)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~ 267 (305)
...+..+...+.+.|++++|...|++..+ | +...|..+..+|...|++++|++.+++..+.+ ..++ ..+|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 45677889999999999999999999874 3 67889999999999999999999999987632 1122 24677
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHhCCCCCcc
Q 036263 268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIE 300 (305)
Q Consensus 268 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 300 (305)
.+-.++...|++++|++.|+... . ..|+++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal-~--~~~~~~ 117 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSL-S--EFRDPE 117 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-H--HSCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-h--hCcCHH
Confidence 77888899999999999999877 3 345544
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.23 E-value=3.7e-05 Score=52.26 Aligned_cols=94 Identities=14% Similarity=0.019 Sum_probs=81.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036263 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272 (305)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 272 (305)
....+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 355678888899999999999999999863 367788889999999999999999999988853 2357788888999
Q ss_pred HhccCcHHHHHHHHHHHH
Q 036263 273 CSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~ 290 (305)
+...|++++|...++...
T Consensus 82 ~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 999999999999999887
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.23 E-value=1.4e-05 Score=53.97 Aligned_cols=92 Identities=8% Similarity=-0.105 Sum_probs=50.4
Q ss_pred HHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C---chhhHHHHHHHHH
Q 036263 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R---TLVSWNSIIVGFA 239 (305)
Q Consensus 165 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~li~~~~ 239 (305)
+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+ | +...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3444444555555555555555555443 33445555555556666666666666655542 2 3455555566666
Q ss_pred hc-CChHHHHHHHHHHHHC
Q 036263 240 VN-GFVGEALEYFNLMQKG 257 (305)
Q Consensus 240 ~~-g~~~~a~~~~~~m~~~ 257 (305)
.. |++++|.+.+++....
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 66 6666666666665553
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.21 E-value=7.1e-05 Score=52.03 Aligned_cols=94 Identities=9% Similarity=-0.032 Sum_probs=76.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 209 (305)
|..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|...++...+.. +.+...|..+..+|..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 5566777888888888888888877642 2357788888888899999999999999888875 5567888888999999
Q ss_pred cCChHHHHHHHHhccc
Q 036263 210 FGCIEFARQVFQRMHK 225 (305)
Q Consensus 210 ~g~~~~a~~~~~~~~~ 225 (305)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 9999999999888763
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=5.7e-05 Score=53.22 Aligned_cols=97 Identities=5% Similarity=-0.162 Sum_probs=84.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036263 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270 (305)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 270 (305)
+.+...+..+...+...|++++|...|++... .+...|..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 35678899999999999999999999998874 357889999999999999999999999998854 23577888999
Q ss_pred HHHhccCcHHHHHHHHHHHHH
Q 036263 271 TACSHAGLIEDGLQYFDIMKK 291 (305)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~ 291 (305)
.++...|++++|...|+...+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999998873
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.18 E-value=3.4e-05 Score=55.12 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=79.0
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (305)
.+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...++...+.. +.+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 35566777888999999999999887652 2367778888888999999999999999998876 566788888999999
Q ss_pred hcCChHHHHHHHHhccc
Q 036263 209 RFGCIEFARQVFQRMHK 225 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~~ 225 (305)
..|++++|...|++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988763
No 161
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=2.2e-05 Score=56.76 Aligned_cols=127 Identities=10% Similarity=0.003 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHhhcCC---CC--ChhHHHHHHHHHHhcCChHHHHHHHHhccc-----C----chh
Q 036263 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDF---KD--NVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----R----TLV 229 (305)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~----~~~ 229 (305)
++..+...+...|++++|...+++..+... .+ -..++..+...|...|++++|.+.+++..+ + ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 334444444455555555555544433210 00 013455566666666666666666666542 1 134
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 230 SWNSIIVGFAVNGFVGEALEYFNLMQKG----VFKT-DEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+..+...+...|++++|.+.+++..+. +-.+ ...++..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5666666777777777777777665432 1111 13456666777778888888888887766
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.16 E-value=6.4e-05 Score=55.07 Aligned_cols=97 Identities=6% Similarity=-0.086 Sum_probs=84.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036263 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271 (305)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 271 (305)
.+...+..+...+.+.|++++|...|++..+ | +...|..+..+|...|++++|...|++..+.. +-+...|..+..
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3466788889999999999999999999874 3 67889999999999999999999999998854 235788889999
Q ss_pred HHhccCcHHHHHHHHHHHHHH
Q 036263 272 ACSHAGLIEDGLQYFDIMKKI 292 (305)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~ 292 (305)
++...|++++|...|+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998843
No 163
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.16 E-value=1.5e-05 Score=57.68 Aligned_cols=127 Identities=10% Similarity=0.030 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc----CCCC-ChhH
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQISGV---EP--DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ----DFKD-NVRV 199 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 199 (305)
+..+...+...|++++|...+++..+... .+ ...++..+...+...|++++|...++...+. +-++ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 44455555555666666655555433210 01 1235556666666777777777777665432 1111 1445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccc-----C----chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHK-----R----TLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
+..+...+...|++++|.+.+++..+ . ....+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66777777888888888887777652 1 234667777888888888888888887654
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.15 E-value=0.00047 Score=56.94 Aligned_cols=222 Identities=11% Similarity=0.029 Sum_probs=153.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhcC
Q 036263 47 QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFG-RMDLATVVFDVMR 125 (305)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~ 125 (305)
.++.+-....+.+..++|+++++++.. +.|+..| +|+.--.++...| .+++++..++.+.
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~--~nP~~yt-----------------aWn~R~~iL~~l~~~l~eEL~~~~~~L 116 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVR--MNPAHYT-----------------VWQYRFSLLTSLNKSLEDELRLMNEFA 116 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHH--HCTTCHH-----------------HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH--hCchhHH-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344444455556666799999999987 4555332 3455555566677 5999999998885
Q ss_pred c-----cccHHHHHHHHHcC-C-ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChh--------HHHHHHHHHh
Q 036263 126 G-----CDFWTALLNGFVKR-D-YFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLG--------IGLWMHRYVP 189 (305)
Q Consensus 126 ~-----~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~--------~a~~~~~~~~ 189 (305)
. ..+|+.-...+.+. + ++++++++++.+.+. .| +...|+.-...+.+.+.++ ++.+.++.+.
T Consensus 117 ~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 117 VQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML 194 (349)
T ss_dssp HTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 4 34466555555554 6 789999999998864 34 5667766555555555555 8899999999
Q ss_pred hcCCCCChhHHHHHHHHHHhcCC-------hHHHHHHHHhccc--C-chhhHHHHHHHHHhcCCh---------------
Q 036263 190 KQDFKDNVRVCNTLMDVYSRFGC-------IEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFV--------------- 244 (305)
Q Consensus 190 ~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~--------------- 244 (305)
+.. +-|...|+.-...+.+.++ ++++.+.+++... | |...|+-+-..+.+.|+.
T Consensus 195 ~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~ 273 (349)
T 3q7a_A 195 RVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASK 273 (349)
T ss_dssp HHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--
T ss_pred HhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccccccc
Confidence 886 5678888888888877776 6788888877763 3 667887776667666654
Q ss_pred -----HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 245 -----GEALEYFNLMQKGV-----FKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 245 -----~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
....++..++...+ -.++...+..+...|...|+.++|.++++.+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 274 LNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp ------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33344444443322 13678889999999999999999999999986
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=0.00012 Score=52.01 Aligned_cols=95 Identities=7% Similarity=-0.111 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHH
Q 036263 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN----VRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNS 233 (305)
Q Consensus 161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ 233 (305)
+...+..+...+...|++++|...++...+.. |+ ...+..+..+|...|++++|...+++..+ | +...|..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 45566666667777777777777777776653 33 56666777777777777777777776653 2 4566667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 036263 234 IIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 234 li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
+..++...|++++|...|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777777777777777777663
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.10 E-value=3e-05 Score=53.83 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=67.2
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCC--CCC----hhHHHH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF--KDN----VRVCNT 202 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 202 (305)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 35566667777777777777777766542 23566677777777788888888888877766531 112 566777
Q ss_pred HHHHHHhcCChHHHHHHHHhccc
Q 036263 203 LMDVYSRFGCIEFARQVFQRMHK 225 (305)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~ 225 (305)
+..+|...|++++|.+.|++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 77888888888888888877763
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.10 E-value=6e-05 Score=52.28 Aligned_cols=90 Identities=12% Similarity=-0.010 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 276 (305)
+..+...+.+.|++++|...|++..+ | +...|..+..++...|++++|...|++..+.. +-+...+..+..++.+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34455666677777777777777663 3 55667777777777777777777777776642 12455666677777777
Q ss_pred CcHHHHHHHHHHHH
Q 036263 277 GLIEDGLQYFDIMK 290 (305)
Q Consensus 277 g~~~~a~~~~~~m~ 290 (305)
|++++|+..++...
T Consensus 99 g~~~~A~~~~~~al 112 (121)
T 1hxi_A 99 HNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777777666
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=7.8e-05 Score=53.08 Aligned_cols=95 Identities=9% Similarity=-0.092 Sum_probs=83.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036263 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT----LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268 (305)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 268 (305)
.+...+..+...+...|++++|...|++..+ |+ ...|..+...|...|++++|...+++..+.. +.+...+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 4577888899999999999999999999874 44 6788889999999999999999999988753 236778888
Q ss_pred HHHHHhccCcHHHHHHHHHHHH
Q 036263 269 ALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 269 li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+..++...|++++|...|+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 8899999999999999999888
No 169
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.08 E-value=4.4e-05 Score=66.45 Aligned_cols=120 Identities=8% Similarity=-0.110 Sum_probs=82.9
Q ss_pred HHcCCChHHHHHHHHHHHHc---CCC---C-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc-----C--CCCChhHHHH
Q 036263 137 FVKRDYFEEALEYFRVMQIS---GVE---P-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-----D--FKDNVRVCNT 202 (305)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~---g~~---p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 202 (305)
+...|++++|+.++++..+. -+- | ...+++.|..+|...|++++|..++++..+. | -+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44678889998888776542 122 2 2667889999999999999999988876542 2 1123567888
Q ss_pred HHHHHHhcCChHHHHHHHHhccc----------C-chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 203 LMDVYSRFGCIEFARQVFQRMHK----------R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
|...|...|++++|+.++++..+ | ...+.+.+-.++...+.+++|..+|.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999888776652 1 123444555556666666666666666654
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.07 E-value=1.6e-05 Score=69.21 Aligned_cols=113 Identities=11% Similarity=0.016 Sum_probs=54.6
Q ss_pred hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHH
Q 036263 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEAL 248 (305)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 248 (305)
+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|.+.+++..+ .+...|..+..+|...|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344555555555555555543 33355555555555555555555555555542 23445555555555566666666
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHH--HhccCcHHHHHHHHH
Q 036263 249 EYFNLMQKGVFKT-DEVSFTGALTA--CSHAGLIEDGLQYFD 287 (305)
Q Consensus 249 ~~~~~m~~~g~~p-~~~~~~~li~~--~~~~g~~~~a~~~~~ 287 (305)
+.|++..+.. | +...+..+..+ +.+.|++++|++.++
T Consensus 95 ~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6655555432 2 12222222222 455555666555554
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.06 E-value=4.3e-05 Score=53.04 Aligned_cols=87 Identities=8% Similarity=-0.045 Sum_probs=46.2
Q ss_pred HHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChH
Q 036263 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVG 245 (305)
Q Consensus 169 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 245 (305)
...+.+.|++++|...++...+.. +.+...|..+..++...|++++|...|++..+ | +...+..+..++...|+++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 334445555555555555555543 33455555555555555555555555555542 2 3345555555555555555
Q ss_pred HHHHHHHHHHH
Q 036263 246 EALEYFNLMQK 256 (305)
Q Consensus 246 ~a~~~~~~m~~ 256 (305)
+|...+++..+
T Consensus 103 ~A~~~~~~al~ 113 (121)
T 1hxi_A 103 AALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.05 E-value=1.8e-05 Score=63.83 Aligned_cols=94 Identities=13% Similarity=-0.019 Sum_probs=82.4
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 207 (305)
.+..+...+.+.|++++|...|++..+. .| +...+..+..++...|++++|...++...+.. +.+...+..+..+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3566778899999999999999998775 45 67888899999999999999999999998875 56788899999999
Q ss_pred HhcCChHHHHHHHHhccc
Q 036263 208 SRFGCIEFARQVFQRMHK 225 (305)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~ 225 (305)
...|++++|...|++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998874
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.05 E-value=3.6e-05 Score=67.03 Aligned_cols=112 Identities=11% Similarity=0.008 Sum_probs=50.2
Q ss_pred HcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 036263 138 VKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216 (305)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 216 (305)
.+.|++++|.+.+++..+. .| +...+..+..++.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445555555555544432 22 24444555555555555555555555555443 33344455555555555555555
Q ss_pred HHHHHhccc--C-chhhHHHHHHH--HHhcCChHHHHHHHH
Q 036263 217 RQVFQRMHK--R-TLVSWNSIIVG--FAVNGFVGEALEYFN 252 (305)
Q Consensus 217 ~~~~~~~~~--~-~~~~~~~li~~--~~~~g~~~~a~~~~~ 252 (305)
.+.|++..+ | +...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555432 1 22233333333 444455555555554
No 174
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.04 E-value=0.0033 Score=51.08 Aligned_cols=193 Identities=8% Similarity=-0.010 Sum_probs=143.7
Q ss_pred chHhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHH----Hhc---CCh
Q 036263 44 TTVQWTSSISRHCRSG--CILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMY----AKF---GRM 114 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~----~~~---g~~ 114 (305)
+...||.--..+...| ++++++++++.+... .|... .+|+.--..+ .+. +++
T Consensus 66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y-----------------~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNY-----------------QIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCC-----------------HHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccH-----------------HHHHHHHHHHHHHHHhccccCCH
Confidence 4556887777888888 999999999999874 34321 1222222223 344 789
Q ss_pred HHHHHHHHhcCc-----cccHHHHHHHHHcCCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC------hhHH
Q 036263 115 DLATVVFDVMRG-----CDFWTALLNGFVKRDYFE--EALEYFRVMQISGVEPDYLTIISVLNVCANVRT------LGIG 181 (305)
Q Consensus 115 ~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~------~~~a 181 (305)
++++.+++.+.+ -..|+--...+.+.|.++ ++++.++++.+... -|...|+.-...+...+. ++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 999999988854 345666666677788888 99999999988642 256667665555666665 8889
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhccc------CchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF-ARQVFQRMHK------RTLVSWNSIIVGFAVNGFVGEALEYFNLM 254 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m 254 (305)
.+.++.+++.. +-|...|+-+-..+.+.|+..+ +..+..++.+ .+...+..+...|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999998886 6788899999888888888444 5567776553 36678888999999999999999999999
Q ss_pred HHC
Q 036263 255 QKG 257 (305)
Q Consensus 255 ~~~ 257 (305)
.+.
T Consensus 285 ~~~ 287 (306)
T 3dra_A 285 KSK 287 (306)
T ss_dssp HHT
T ss_pred Hhc
Confidence 863
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.00 E-value=7.9e-05 Score=64.51 Aligned_cols=127 Identities=9% Similarity=-0.043 Sum_probs=93.8
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD----------------YLTIISVLNVCANVRTLGIGLWMHRYVPK 190 (305)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 190 (305)
...|..+...+.+.|++++|...|++..+. .|+ ...|..+..++.+.|++++|...+++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 345777888889999999999999887663 232 46777788888888888888888888887
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHH-HHHHHHH
Q 036263 191 QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALE-YFNLMQK 256 (305)
Q Consensus 191 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~ 256 (305)
.. +.+...|..+..+|...|++++|...|++..+ | +...+..+...+...++++++.+ .++.|..
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 75 55677888888888888888888888888764 2 45677777777777777776653 4555543
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.97 E-value=0.00022 Score=49.49 Aligned_cols=85 Identities=9% Similarity=-0.040 Sum_probs=42.8
Q ss_pred hcCcCChhHHHHHHHHHhhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhccc--C-c---hhhHHHHHHHHHhcC
Q 036263 172 CANVRTLGIGLWMHRYVPKQDFKDNV---RVCNTLMDVYSRFGCIEFARQVFQRMHK--R-T---LVSWNSIIVGFAVNG 242 (305)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~---~~~~~~li~~~~~~g 242 (305)
+...|++++|...++.+.+.. +.+. ..+..+..++.+.|++++|...|++..+ | + ...+..+..++...|
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 344455555555555444432 1122 3444455555555555555555555542 2 1 334455555566666
Q ss_pred ChHHHHHHHHHHHHC
Q 036263 243 FVGEALEYFNLMQKG 257 (305)
Q Consensus 243 ~~~~a~~~~~~m~~~ 257 (305)
++++|...|++..+.
T Consensus 91 ~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 91 KNTEAQQTLQQVATQ 105 (129)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666665553
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.96 E-value=0.00012 Score=50.82 Aligned_cols=93 Identities=12% Similarity=-0.036 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC---hhHHHH
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY----LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---VRVCNT 202 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 202 (305)
+..+...+...|++++|...|++..+.. |+. ..+..+..++...|++++|...++...+.. +.+ ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence 3445667777888888888888876642 322 466677778888888888888888887764 333 566777
Q ss_pred HHHHHHhcCChHHHHHHHHhccc
Q 036263 203 LMDVYSRFGCIEFARQVFQRMHK 225 (305)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~ 225 (305)
+..+|.+.|++++|...|+++.+
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888889888888888764
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.94 E-value=1.7e-05 Score=54.58 Aligned_cols=81 Identities=11% Similarity=-0.082 Sum_probs=34.6
Q ss_pred CChhHHHHHHHHHhhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHH
Q 036263 176 RTLGIGLWMHRYVPKQD--FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEY 250 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~ 250 (305)
|++++|...|++..+.+ -+.+...+..+..+|...|++++|...|++..+ | +...+..+..++...|++++|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444444444444432 112233444444444445555555555444432 1 334444444445555555555555
Q ss_pred HHHHHH
Q 036263 251 FNLMQK 256 (305)
Q Consensus 251 ~~~m~~ 256 (305)
+++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.94 E-value=0.00012 Score=53.43 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036263 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263 (305)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 263 (305)
...|..+..+|.+.|++++|...+++..+ .+...|..+..+|...|++++|...|++..+. .|+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 45677777777777777777777777653 35567777777777788888888877777763 4543
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.93 E-value=6.2e-05 Score=62.45 Aligned_cols=141 Identities=11% Similarity=-0.051 Sum_probs=68.5
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (305)
.+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3667777888888999999888886653 454331 122233333322211 125666667777
Q ss_pred hcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-HhccCcHHHHH
Q 036263 209 RFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE-VSFTGALTA-CSHAGLIEDGL 283 (305)
Q Consensus 209 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~-~~~~g~~~~a~ 283 (305)
+.|++++|...+++..+ .+...|..+..+|...|++++|...|++..+. .|+. ..+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776653 25566777777777777777777777776553 3432 333333333 22345556666
Q ss_pred HHHHHHH
Q 036263 284 QYFDIMK 290 (305)
Q Consensus 284 ~~~~~m~ 290 (305)
..|..|.
T Consensus 320 ~~~~~~l 326 (338)
T 2if4_A 320 EMYKGIF 326 (338)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 6666665
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.93 E-value=2.2e-05 Score=54.04 Aligned_cols=86 Identities=10% Similarity=-0.009 Sum_probs=65.4
Q ss_pred cCCChHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 036263 139 KRDYFEEALEYFRVMQISGV-EP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA 216 (305)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~-~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 216 (305)
..|++++|...|++..+.+. .| +...+..+..++...|++++|...+++..+.. +-+...+..+..+|.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 46788899999988876431 13 45677888888889999999999999988875 55678888888999999999999
Q ss_pred HHHHHhccc
Q 036263 217 RQVFQRMHK 225 (305)
Q Consensus 217 ~~~~~~~~~ 225 (305)
...+++...
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888763
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.92 E-value=0.00013 Score=61.37 Aligned_cols=87 Identities=9% Similarity=-0.070 Sum_probs=64.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 036263 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALT 271 (305)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~ 271 (305)
+...|..+..+|.+.|++++|...+++..+ .+...|..+..+|...|++++|.+.|++..+. .| +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 456777888888888888888888888764 25667788888888888888888888888774 34 4556666666
Q ss_pred HHhccCcHHHHHH
Q 036263 272 ACSHAGLIEDGLQ 284 (305)
Q Consensus 272 ~~~~~g~~~~a~~ 284 (305)
.+...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666543
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.89 E-value=0.00021 Score=61.88 Aligned_cols=125 Identities=6% Similarity=-0.136 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC---------------hhHHHHHHHHHHhcCChHHHHHHHHhccc-
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---------------VRVCNTLMDVYSRFGCIEFARQVFQRMHK- 225 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 225 (305)
...+..+-..+.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|...+++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5567788888999999999999999998864 223 58899999999999999999999999874
Q ss_pred --CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHH-HHHHH
Q 036263 226 --RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQ-YFDIM 289 (305)
Q Consensus 226 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~-~~~~m 289 (305)
.+...|..+..+|...|++++|...|++..+. .| +...+..+..++.+.++.+++.. .++.|
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999884 45 44677788888888888887763 44444
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.83 E-value=0.00012 Score=63.66 Aligned_cols=86 Identities=6% Similarity=-0.164 Sum_probs=52.8
Q ss_pred HHHhcCChhHHHHHHHHHHhC---CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc----
Q 036263 54 RHCRSGCILEAALEFTRMRLY---GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---- 126 (305)
Q Consensus 54 ~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---- 126 (305)
.+...|++++|+.++++..+. -+.|+.... ..+++.|..+|...|++++|+.++++...
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~--------------a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~ 383 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYV--------------LRLLSIASEVLSYLQAYEEASHYARRMVDGYMK 383 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHH--------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 356789999999999887653 133332221 23457777778888888888887766532
Q ss_pred ---------cccHHHHHHHHHcCCChHHHHHHHHHH
Q 036263 127 ---------CDFWTALLNGFVKRDYFEEALEYFRVM 153 (305)
Q Consensus 127 ---------~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (305)
..+++.|...|...|++++|..++++.
T Consensus 384 ~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 384 LYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 223555555555555555555555443
No 185
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.81 E-value=0.0056 Score=50.19 Aligned_cols=224 Identities=11% Similarity=0.044 Sum_probs=144.5
Q ss_pred chHhHHHHHHHH---HhcCChh-HHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCC------
Q 036263 44 TTVQWTSSISRH---CRSGCIL-EAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGR------ 113 (305)
Q Consensus 44 ~~~~~~~li~~~---~~~~~~~-~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~------ 113 (305)
-+..|..+...+ .+.|.++ +|+.+++.+.. +.|+..|. |+.--..+...+.
T Consensus 25 ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~--~nP~~yta-----------------Wn~Rr~iL~~l~~~~~~~~ 85 (331)
T 3dss_A 25 KLKLYQSATQAVFQKRQAGELDESVLELTSQILG--ANPDFATL-----------------WNCRREVLQHLETEKSPEE 85 (331)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHT--TCTTCHHH-----------------HHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHH-----------------HHHHHHHHHHhcccccchh
Confidence 345566655543 3566665 78999999986 45554332 2222112222221
Q ss_pred ----hHHHHHHHHhcCc-----cccHHHHHHHHHcCC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC-hhHH
Q 036263 114 ----MDLATVVFDVMRG-----CDFWTALLNGFVKRD--YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT-LGIG 181 (305)
Q Consensus 114 ----~~~a~~~~~~~~~-----~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a 181 (305)
+++++..++.+.. ..+|+.-...+.+.| .+++++.+++.+.+.. +-+...|+.-...+...|. ++++
T Consensus 86 ~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~ee 164 (331)
T 3dss_A 86 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 164 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHH
Confidence 5677777776633 445666666666777 4899999999998863 2266677766666666777 5899
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhc--------------CChHHHHHHHHhccc--C-chhhHHHHHHHHHhc---
Q 036263 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRF--------------GCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVN--- 241 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~--- 241 (305)
.+.++.+.+.. +-|...|+.....+.+. +.++++.+.+++... | |...|+-+-..+.+.
T Consensus 165 l~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 165 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc
Confidence 99999999887 56777777766665554 447788888887763 4 666776554444444
Q ss_pred --------CChHHHHHHHHHHHHCCCCCCH-HHHHHHH---HHHhccCcHHHHHHHHHHHH
Q 036263 242 --------GFVGEALEYFNLMQKGVFKTDE-VSFTGAL---TACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 242 --------g~~~~a~~~~~~m~~~g~~p~~-~~~~~li---~~~~~~g~~~~a~~~~~~m~ 290 (305)
+.++++++.++++.+. .||. .++..++ .+....|..+++...+..+.
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 4578899999999884 4654 2222222 22334677888888888887
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.80 E-value=0.00028 Score=59.25 Aligned_cols=120 Identities=8% Similarity=-0.017 Sum_probs=91.0
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHc--------------CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCC
Q 036263 129 FWTALLNGFVKRDYFEEALEYFRVMQIS--------------GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF 193 (305)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 193 (305)
.+..+...+.+.|++++|...|++..+. ...| +...|..+..++.+.|++++|...+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 3566667777777777777777766541 0233 45678888888999999999999999998865
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHH
Q 036263 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALE 249 (305)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~ 249 (305)
+.+...|..+..+|...|++++|...|++..+ | +...+..+...+...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688889999999999999999999998874 3 55677777777777777776654
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.77 E-value=0.0002 Score=59.36 Aligned_cols=113 Identities=9% Similarity=-0.065 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhc
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN 241 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 241 (305)
...+..+-..+.+.|++++|...|++..+.. |+... +...|+.+++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH------HHHHHHHHHHHHHc
Confidence 3456677778889999999999998887653 33221 223344444443322 24788899999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 242 GFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 242 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
|++++|...+++..+.. +-+...|..+..++...|++++|...|+...
T Consensus 244 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999998853 2367889999999999999999999999876
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.76 E-value=0.00046 Score=50.24 Aligned_cols=95 Identities=11% Similarity=0.027 Sum_probs=71.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHc-------CC---------CC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQIS-------GV---------EP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~---------~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 192 (305)
+......+.+.|++++|...|.+.... .- .| +...|..+..++.+.|++++|...++...+.+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444555566666666666666655432 00 12 34577888888999999999999999998876
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263 193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225 (305)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (305)
+.+...|..+..+|...|++++|...|++..+
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 66788899999999999999999999998874
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.75 E-value=0.00042 Score=50.16 Aligned_cols=91 Identities=14% Similarity=0.000 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccc--Cc-------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHK--RT-------------LVSWNSIIVGFAVNGFVGEALEYFNLMQKG-----VF 259 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~--~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~ 259 (305)
+......+.+.|++++|...|++..+ |+ ...|+.+..++...|++++|+..+++..+. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 34444555556666666666665542 22 227888888888888888888888887773 12
Q ss_pred CCCH-HHH----HHHHHHHhccCcHHHHHHHHHHHH
Q 036263 260 KTDE-VSF----TGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 260 ~p~~-~~~----~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.|+. ..| ...-.++...|++++|+..|+...
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 6754 566 777888999999999999999876
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.70 E-value=0.00059 Score=48.40 Aligned_cols=109 Identities=11% Similarity=-0.069 Sum_probs=68.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHH
Q 036263 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR----FGCIEFAR 217 (305)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 217 (305)
++++|++.|++..+.| .|+.. +-..|...+.+++|.+.|++..+.| +...+..+...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4667777777766665 33333 5555556666666777777766654 45556666666665 56677777
Q ss_pred HHHHhccc-CchhhHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 036263 218 QVFQRMHK-RTLVSWNSIIVGFAV----NGFVGEALEYFNLMQKGV 258 (305)
Q Consensus 218 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 258 (305)
+.|++..+ .+...+..|-..|.. .+++++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77766653 355566666666666 666777777776666655
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.69 E-value=0.0025 Score=45.06 Aligned_cols=113 Identities=7% Similarity=-0.177 Sum_probs=91.1
Q ss_pred CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-CchhhHHHHHHHHHh----cCChHHHH
Q 036263 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-RTLVSWNSIIVGFAV----NGFVGEAL 248 (305)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~ 248 (305)
-.++.++|...|++..+.| .+... +...|...+..++|.+.|++..+ .+...+..+-..|.. .+++++|.
T Consensus 7 ~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3456788999999998888 44443 77777777888999999998875 577888888888888 88999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHhCC
Q 036263 249 EYFNLMQKGVFKTDEVSFTGALTACSH----AGLIEDGLQYFDIMKKIYRV 295 (305)
Q Consensus 249 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~ 295 (305)
++|++..+.| +...+..|-..|.. .+++++|.++|+... ..|.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC-RLGS 128 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH-HCCC
Confidence 9999998876 56667777777777 789999999999887 5554
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.68 E-value=0.00038 Score=50.42 Aligned_cols=59 Identities=10% Similarity=-0.023 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPD-------------YLTIISVLNVCANVRTLGIGLWMHRYVPK 190 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 190 (305)
+......+.+.|++++|+..|++..+. .|+ ...|..+-.++.+.|++++|...++..++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445556677777888888888776553 232 12444555555555555555555555444
No 193
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.61 E-value=0.0027 Score=58.74 Aligned_cols=47 Identities=26% Similarity=0.279 Sum_probs=28.3
Q ss_pred HHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHH
Q 036263 108 YAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (305)
....|+++.|.++.+.+.+...|..+...+.+.|+++.|.+.|..+.
T Consensus 662 ~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34456666666666665555566666666666666666666665543
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00052 Score=46.71 Aligned_cols=76 Identities=14% Similarity=0.014 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
.+...++...+.. +.+...+..+...|...|++++|...|++..+ .+...|..+..+|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555543 44566666777777777777777777776653 2445666677777777777777777776655
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.60 E-value=8.1e-05 Score=50.17 Aligned_cols=60 Identities=8% Similarity=0.064 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
...+..+...+...|++++|.+.|++..+ .+...|..+..++...|++++|.+.+++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44555566666666666666666666552 2455666666666677777777777766665
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=7.2e-05 Score=50.45 Aligned_cols=62 Identities=10% Similarity=-0.110 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
...+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|.+.+++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3344455555555566666666655555543 3345555555666666666666666665554
No 197
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.53 E-value=0.0034 Score=54.82 Aligned_cols=200 Identities=16% Similarity=0.020 Sum_probs=121.4
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV 123 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 123 (305)
+...|-..+..+.+.|++++|..+|++.... |+..........+.+.. ..+..+...+.. ...+.+......
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~----~~~~~l~~~~~~-~~~~~~~~~~~~ 283 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEE----AVYGDLKRKYSM-GEAESAEKVFSK 283 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT----HHHHHHHHHTC-----------CHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchh----HHHHHHHHHHHh-hccchhhhhccc
Confidence 4667777788888999999999999999986 55433221111110100 011111111100 000000000000
Q ss_pred cCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-cCChhHHHHHHHHHhhcCCCCChhHHHH
Q 036263 124 MRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN-VRTLGIGLWMHRYVPKQDFKDNVRVCNT 202 (305)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 202 (305)
.....|-..+....+.+..+.|..+|... .. ...+...|......-.. .++.+.|..+|+...+.- +-+...+..
T Consensus 284 -~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~ 359 (493)
T 2uy1_A 284 -ELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEE 359 (493)
T ss_dssp -HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 00234666677776778899999999887 22 11234444322221122 236899999999988763 334556666
Q ss_pred HHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
.++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++.+
T Consensus 360 yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7887888899999999999985 3567788888777788999999998888764
No 198
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.42 E-value=0.053 Score=47.25 Aligned_cols=48 Identities=6% Similarity=-0.168 Sum_probs=27.9
Q ss_pred CchHhHHHHHHHHHhcCC-hhHHHHHHHHHHhC-CCCC-CHhhHHHHHHhh
Q 036263 43 DTTVQWTSSISRHCRSGC-ILEAALEFTRMRLY-GTNP-SHITFVTLLSGC 90 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~-g~~p-~~~~~~~ll~~~ 90 (305)
|++..|...+....+.+. .+....+|+..... |..| +...|...+.-+
T Consensus 45 ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~ 95 (493)
T 2uy1_A 45 YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEE 95 (493)
T ss_dssp CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 577778777777776653 35566677776654 4333 455555555443
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.42 E-value=0.0013 Score=44.60 Aligned_cols=79 Identities=16% Similarity=0.040 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 145 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
.|...|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777766532 2357788888888999999999999999988875 5567788899999999999999999988876
Q ss_pred c
Q 036263 225 K 225 (305)
Q Consensus 225 ~ 225 (305)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.38 E-value=0.00032 Score=50.71 Aligned_cols=95 Identities=9% Similarity=-0.068 Sum_probs=59.5
Q ss_pred CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh----------HHHHHHHHhccc--C-chhhHHHHHHHHHhc-
Q 036263 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI----------EFARQVFQRMHK--R-TLVSWNSIIVGFAVN- 241 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~~~~--~-~~~~~~~li~~~~~~- 241 (305)
+.+++|.+.++...+.. +.+...|..+..++...+++ ++|...|++..+ | +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 44555566666655554 44555565555555555443 466666666653 3 445666777777665
Q ss_pred ----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263 242 ----------GFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273 (305)
Q Consensus 242 ----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 273 (305)
|++++|.+.|++..+ +.|+...|...+...
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 478888888888888 567776665555543
No 201
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.29 E-value=0.0039 Score=57.71 Aligned_cols=100 Identities=19% Similarity=0.161 Sum_probs=72.0
Q ss_pred HHhcCChHHHHH-HHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHH
Q 036263 108 YAKFGRMDLATV-VFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR 186 (305)
Q Consensus 108 ~~~~g~~~~a~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 186 (305)
....+++++|.+ ++..+++......++..+.+.|.++.|+++.+. |.. - .......|++++|.++.+
T Consensus 609 ~~~~~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~~-~----f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPD-------QDQ-K----FELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCCCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HHH-H----HHHHHHHTCHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCChHHheecCCC-------cch-h----eehhhhcCCHHHHHHHHH
Confidence 345689999988 765555122347788888889999988876632 111 1 233456788888888754
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225 (305)
Q Consensus 187 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (305)
.+ .+...|..+...+.+.|+++.|++.|.++.+
T Consensus 677 ~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 677 DE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp TC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 43 4577899999999999999999999998874
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.28 E-value=0.0039 Score=39.85 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=24.3
Q ss_pred HHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223 (305)
Q Consensus 166 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (305)
..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...+++.
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333334444444444444444444332 223334444444444444444444444443
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.26 E-value=0.0022 Score=42.38 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (305)
...+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|.+.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444555555555555555554443 233444555555555555555555554443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.23 E-value=0.0034 Score=40.10 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263 197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273 (305)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 273 (305)
...+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..+.. +-+...+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45566677777777777777777777653 245667777777777777777777777776642 12445555555554
Q ss_pred hc
Q 036263 274 SH 275 (305)
Q Consensus 274 ~~ 275 (305)
.+
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.21 E-value=0.0044 Score=51.27 Aligned_cols=71 Identities=10% Similarity=0.024 Sum_probs=43.0
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCcccc
Q 036263 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302 (305)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 302 (305)
+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++.. .+.|...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---rL~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF---NLRPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCcChH
Confidence 45556655555555667777777777666643 565555555566666677777776666555 344544443
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.20 E-value=0.0021 Score=42.56 Aligned_cols=63 Identities=6% Similarity=0.008 Sum_probs=53.6
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
+-+...+..+..+|.+.|++++|...|++..+ | +...|..+..+|...|++++|.+.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34577888899999999999999999998874 3 567888999999999999999999998765
No 207
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.12 E-value=0.051 Score=44.51 Aligned_cols=183 Identities=10% Similarity=0.074 Sum_probs=122.6
Q ss_pred HHhcCChH-HHHHHHHhcCc-----cccHHHHHHHHHcCCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 036263 108 YAKFGRMD-LATVVFDVMRG-----CDFWTALLNGFVKRDY----------FEEALEYFRVMQISGVEP-DYLTIISVLN 170 (305)
Q Consensus 108 ~~~~g~~~-~a~~~~~~~~~-----~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p-~~~t~~~ll~ 170 (305)
..+.|.++ +|+.+++.+.. ..+|+.=-..+...|. +++++.+++.+... .| +..+|+.--.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34556654 78888888754 2224332222222222 67888999888775 34 5666766555
Q ss_pred HhcCcC--ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhccc---CchhhHHHHHHHHHhc---
Q 036263 171 VCANVR--TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC-IEFARQVFQRMHK---RTLVSWNSIIVGFAVN--- 241 (305)
Q Consensus 171 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~li~~~~~~--- 241 (305)
.+...+ .++++..+++.+.+.. +-|-..|+.-.-++...|. ++++.+.++++.+ .|...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhc
Confidence 555556 4889999999999987 6778888887777788888 5899999988874 3667777766665544
Q ss_pred -----------CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc-----------CcHHHHHHHHHHHHHHhCCCCC
Q 036263 242 -----------GFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHA-----------GLIEDGLQYFDIMKKIYRVSPQ 298 (305)
Q Consensus 242 -----------g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~~p~ 298 (305)
+.++++++.+++.... .| |...|+-+-..+.+. +.++++++.++++. .+.||
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell---e~~pd 270 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ---ELEPE 270 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH---HHCTT
T ss_pred cccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH---hhCcc
Confidence 4578899999998874 35 445554333333333 45788888888887 44454
No 208
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.12 E-value=0.084 Score=43.52 Aligned_cols=193 Identities=11% Similarity=-0.012 Sum_probs=131.0
Q ss_pred chHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhc-C-ChHHHHHH
Q 036263 44 TTVQWTSSISRHCRSG-CILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKF-G-RMDLATVV 120 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~-g-~~~~a~~~ 120 (305)
+...||.--..+...| .+++++++++.+... .|. +..+|+.-..++.+. + +.++++..
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPK-----------------ny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLK-----------------SYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCC-----------------CHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCC-----------------cHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4556777777777777 599999999999874 343 222344444445555 6 78899999
Q ss_pred HHhcCc-----cccHHHHHHHHHcCCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC-------hhH
Q 036263 121 FDVMRG-----CDFWTALLNGFVKRDYFE--------EALEYFRVMQISGVEPDYLTIISVLNVCANVRT-------LGI 180 (305)
Q Consensus 121 ~~~~~~-----~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-------~~~ 180 (305)
++.+.+ ...|+--...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.++ +++
T Consensus 148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 999866 223443333333444444 8999999988864 2367777777777777665 678
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhccc---------CchhhH
Q 036263 181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI--------------------EFARQVFQRMHK---------RTLVSW 231 (305)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~---------~~~~~~ 231 (305)
+.+.++..++.. +-|...|+-+-..+.+.|+. .+...+..++.. +.....
T Consensus 227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 888888888876 66788888877777776654 233333333332 355677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 232 NSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 232 ~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
.-+...|...|+.++|.++++.+.+.
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 88899999999999999999998754
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.10 E-value=0.0033 Score=53.75 Aligned_cols=90 Identities=10% Similarity=-0.044 Sum_probs=60.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc
Q 036263 50 SSISRHCRSGCILEAALEFTRMRLYG---TNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG 126 (305)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 126 (305)
..+..+.+.|++++|+.++++..+.. +.|+.... ..+++.|..+|...|++++|+.++++...
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~--------------~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQ--------------LKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHH--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHH--------------HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34566778899999999999988642 33333221 23457778888888899888888776633
Q ss_pred -------------cccHHHHHHHHHcCCChHHHHHHHHHH
Q 036263 127 -------------CDFWTALLNGFVKRDYFEEALEYFRVM 153 (305)
Q Consensus 127 -------------~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (305)
..+++.|...|...|++++|+.++++.
T Consensus 358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333666666666666666666666554
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.07 E-value=0.0028 Score=54.20 Aligned_cols=82 Identities=6% Similarity=-0.082 Sum_probs=51.0
Q ss_pred cCChhHHHHHHHHHHhC---CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc--------
Q 036263 58 SGCILEAALEFTRMRLY---GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-------- 126 (305)
Q Consensus 58 ~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------- 126 (305)
.|++++|+.++++..+. -+.|+.... ..+++.|..+|...|++++|+.++++...
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~--------------a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~ 376 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYM--------------LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV 376 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHH--------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC
Confidence 56788888888876653 233432221 23456777778888888888877766533
Q ss_pred -----cccHHHHHHHHHcCCChHHHHHHHHHH
Q 036263 127 -----CDFWTALLNGFVKRDYFEEALEYFRVM 153 (305)
Q Consensus 127 -----~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (305)
..+++.|...|...|++++|+.++++.
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 233556666666666666666665544
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.04 E-value=0.003 Score=54.04 Aligned_cols=62 Identities=13% Similarity=0.061 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKG-----V-FKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 229 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+++.+..+|...|++++|..++++...- | -.|+ ..+++.|...|...|++++|+.++++..
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444555555555555555554443221 1 1111 1334444445555555555555544443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.03 E-value=0.0022 Score=54.80 Aligned_cols=83 Identities=12% Similarity=-0.026 Sum_probs=55.2
Q ss_pred CcCChhHHHHHHHHHhhc---CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhccc----------C-chhhHHHHH
Q 036263 174 NVRTLGIGLWMHRYVPKQ---DFKD----NVRVCNTLMDVYSRFGCIEFARQVFQRMHK----------R-TLVSWNSII 235 (305)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~li 235 (305)
..|++++|..++++..+. -+.| ...+++.+..+|...|++++|..++++..+ | ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 456777777777766442 1112 245677777888888888888777777652 2 235677777
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 036263 236 VGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 236 ~~~~~~g~~~~a~~~~~~m~~ 256 (305)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 777888888888777776543
No 213
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.03 E-value=0.052 Score=48.21 Aligned_cols=145 Identities=13% Similarity=0.062 Sum_probs=96.9
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCC----------hhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263 142 YFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRT----------LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210 (305)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 210 (305)
..++|++.++++.+. .|+ ...|+.--.++...++ ++++...++.+.+.. +-+..+|+.-.-++.+.
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 345778888877764 453 4455544444444444 778888888887765 55677777777777777
Q ss_pred C--ChHHHHHHHHhccc---CchhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------
Q 036263 211 G--CIEFARQVFQRMHK---RTLVSWNSIIVGFAVNG-FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA-------- 276 (305)
Q Consensus 211 g--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-------- 276 (305)
| +++++.+.++++.+ .|..+|+.-...+...| .++++++.++++.+..+ -|...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccccccc
Confidence 7 66888888888774 35677777777777777 78888888888877542 2555555555444432
Q ss_pred ------CcHHHHHHHHHHHH
Q 036263 277 ------GLIEDGLQYFDIMK 290 (305)
Q Consensus 277 ------g~~~~a~~~~~~m~ 290 (305)
+.++++.+.++...
T Consensus 200 ~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHH
Confidence 55777777777666
No 214
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.063 Score=39.35 Aligned_cols=129 Identities=10% Similarity=0.039 Sum_probs=84.8
Q ss_pred HHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHH
Q 036263 106 DMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH 185 (305)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 185 (305)
......|+++.|.++.+.+.+...|..|.....+.|+++-|...|..... |..+.-.|.-.|+.+....+-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34556788888888888887777888888888888888888888877653 344444455566666666655
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM 254 (305)
Q Consensus 186 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 254 (305)
+.....|- ++.....+...|+++++.++|.+...... -.......|-.+.|.++.+.+
T Consensus 84 ~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 84 NIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence 55554441 45555666677888888888777664221 111122355566666666654
No 215
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.89 E-value=0.089 Score=46.70 Aligned_cols=160 Identities=11% Similarity=0.027 Sum_probs=117.8
Q ss_pred hHHHHHHHHhcCc-----cccHHHHHHHHHcCCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcC-
Q 036263 114 MDLATVVFDVMRG-----CDFWTALLNGFVKRDY----------FEEALEYFRVMQISGVEP-DYLTIISVLNVCANVR- 176 (305)
Q Consensus 114 ~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~- 176 (305)
-++|.+.++.+.. ..+|+.--..+.+.|+ ++++++.++.+.+. .| +..+|..--..+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 4567777777743 3345554455555555 89999999998875 44 5677777777777788
Q ss_pred -ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhcccC---chhhHHHHHHHHHhc----------
Q 036263 177 -TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG-CIEFARQVFQRMHKR---TLVSWNSIIVGFAVN---------- 241 (305)
Q Consensus 177 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~---------- 241 (305)
+++++.+.++.+.+.+ +-+...|+.-..++.+.| .++++.+.++++.+. |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6799999999999987 667888888888888888 899999999998853 667888777666653
Q ss_pred ----CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc
Q 036263 242 ----GFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGL 278 (305)
Q Consensus 242 ----g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 278 (305)
+.++++.+.+++.... .| |...|.-.-..+.+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred cccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence 5578999999888874 35 44566655555555554
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.83 E-value=0.1 Score=43.21 Aligned_cols=151 Identities=8% Similarity=-0.003 Sum_probs=98.5
Q ss_pred HHHHHHHHhcCc-cccHHHHHHHHHc--CC---ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcC---c-----CChh
Q 036263 115 DLATVVFDVMRG-CDFWTALLNGFVK--RD---YFEEALEYFRVMQISGVEPD-YLTIISVLNVCAN---V-----RTLG 179 (305)
Q Consensus 115 ~~a~~~~~~~~~-~~~~~~li~~~~~--~g---~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~---~-----~~~~ 179 (305)
.++.......+. ...|...+++... .+ ...+|..+|++..+. .|+ ...+..+..++.. . ....
T Consensus 181 ~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~ 258 (372)
T 3ly7_A 181 RMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLA 258 (372)
T ss_dssp HHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHH
Confidence 344444455544 5668877766443 22 357899999998874 675 3344333333321 0 1111
Q ss_pred HHHHHHHHHhh-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--cCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 180 IGLWMHRYVPK-QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 180 ~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
.....++.... ...+.+..+|..+...+...|++++|...+++.. .|+...|..+...+.-.|++++|.+.+++...
T Consensus 259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11122222111 1226678888888887888899999999999987 47777777888889999999999999999888
Q ss_pred CCCCCCHHHHHHH
Q 036263 257 GVFKTDEVSFTGA 269 (305)
Q Consensus 257 ~g~~p~~~~~~~l 269 (305)
+.|...||...
T Consensus 339 --L~P~~~t~~~~ 349 (372)
T 3ly7_A 339 --LRPGANTLYWI 349 (372)
T ss_dssp --HSCSHHHHHHH
T ss_pred --cCCCcChHHHH
Confidence 46888777543
No 217
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.76 E-value=0.0046 Score=44.62 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=68.6
Q ss_pred cCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCCh----------hHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 036263 139 KRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTL----------GIGLWMHRYVPKQDFKDNVRVCNTLMDVY 207 (305)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 207 (305)
+.+.+++|.+.++...+. .| +...|..+-.++...+++ ++|...|++.++.+ +.+...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 344577777777776664 34 566777676677666654 58888999888876 55678888999999
Q ss_pred HhcC-----------ChHHHHHHHHhcc--cCchhhHHHHHH
Q 036263 208 SRFG-----------CIEFARQVFQRMH--KRTLVSWNSIIV 236 (305)
Q Consensus 208 ~~~g-----------~~~~a~~~~~~~~--~~~~~~~~~li~ 236 (305)
...| ++++|.+.|++.. +|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8764 8999999999887 466555544444
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.12 Score=37.80 Aligned_cols=128 Identities=11% Similarity=0.063 Sum_probs=76.1
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 036263 136 GFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215 (305)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 215 (305)
.....|+++.|.++.+++ -+...|..|-......|+++.|++.|..... +..+.-.|.-.|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345567777777776554 3566777777777777777777777766543 3344445555666655
Q ss_pred HHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289 (305)
Q Consensus 216 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 289 (305)
-.++-+.....+ -++.....+.-.|+++++.++|.+... .|....+ .+. .|-.+.|.++.+.+
T Consensus 79 L~kla~iA~~~g--~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~~~---A~t---~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRE--DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAYAV---AKA---NGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHHHH---HHH---TTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc--cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHHHH---HHH---cCcHHHHHHHHHHh
Confidence 554433332221 245566677788999999988865433 2322211 112 46677777777655
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.43 E-value=0.0057 Score=52.27 Aligned_cols=197 Identities=13% Similarity=0.096 Sum_probs=142.7
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------CChhHHHHHHHHHHhcC
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------NNVMVSTALLDMYAKFG 112 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------~~~~~~~~ll~~~~~~g 112 (305)
.|+..|..+|.+..+.|.+++-+..+.-.++..-.| ..=+.++-++++.++ |+..-...+.+-|...|
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~ 158 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK 158 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSC
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 488889999999999999999999877666653344 445678888888887 77777788888888888
Q ss_pred ChHHHHHHHHhcCc--------------------------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 036263 113 RMDLATVVFDVMRG--------------------------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII 166 (305)
Q Consensus 113 ~~~~a~~~~~~~~~--------------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 166 (305)
.++.|.-+|..+.+ +.+|-.+-.+|...+.+..|.-.--.+. +.|| -..
T Consensus 159 lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~ 233 (624)
T 3lvg_A 159 MYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELE 233 (624)
T ss_dssp CSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCS
T ss_pred CHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHH
Confidence 88888888877654 5568888888888887776643332222 2222 234
Q ss_pred HHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc----C-------chhhHHHHH
Q 036263 167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----R-------TLVSWNSII 235 (305)
Q Consensus 167 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~-------~~~~~~~li 235 (305)
.++..|-+.|.+++...+++...... ....-+|+-|.-.|++- ++++..+.++..-. | ....|.-++
T Consensus 234 elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~Elv 311 (624)
T 3lvg_A 234 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 311 (624)
T ss_dssp GGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHH
Confidence 46667888888888888888776443 56678888888888875 45665555544332 2 456788899
Q ss_pred HHHHhcCChHHHH
Q 036263 236 VGFAVNGFVGEAL 248 (305)
Q Consensus 236 ~~~~~~g~~~~a~ 248 (305)
-.|+.-.+++.|.
T Consensus 312 fLY~~ydE~DnA~ 324 (624)
T 3lvg_A 312 FLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHTCHHHHH
T ss_pred HHHhcchhHHHHH
Confidence 9999888888775
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.23 E-value=0.018 Score=37.50 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=30.4
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCC-CHH-HHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263 135 NGFVKRDYFEEALEYFRVMQISGVEP-DYL-TIISVLNVCANVRTLGIGLWMHRYVPKQD 192 (305)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 192 (305)
..+.+.|++++|...|++..+. .| +.. .+..+..++...|++++|...|+...+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444555666666666655543 23 334 55555555556666666666666555543
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.22 E-value=0.006 Score=39.83 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=32.0
Q ss_pred HHHHHhcCChHHHHHHHHhccc--C-chh-hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263 204 MDVYSRFGCIEFARQVFQRMHK--R-TLV-SWNSIIVGFAVNGFVGEALEYFNLMQKG 257 (305)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 257 (305)
...+.+.|++++|...|++..+ | +.. .|..+..+|...|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445556666666666666542 2 334 5566666666666666666666666553
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.84 E-value=0.052 Score=35.96 Aligned_cols=67 Identities=9% Similarity=0.023 Sum_probs=53.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhccc----------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036263 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----------RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263 (305)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 263 (305)
.++.-+..+...+.+.|+++.|...|+...+ .....+..+..+|.+.|+++.|...+++..+ +.|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 4566677888888999999999998887653 1346788888899999999999999999887 45654
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.74 E-value=0.3 Score=33.97 Aligned_cols=66 Identities=11% Similarity=-0.084 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCC
Q 036263 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS 296 (305)
Q Consensus 229 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 296 (305)
.-+...+.....+|+-++-.+++.++.. +-+|++...-.+..+|.+.|+..++.+++.+.- +.|++
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC-~kG~k 157 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC-KKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH-HhhhH
Confidence 3455667788888998988888888544 356788888888999999999999999998887 66654
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.63 E-value=0.11 Score=33.62 Aligned_cols=65 Identities=6% Similarity=-0.036 Sum_probs=42.1
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036263 194 KDNVRVCNTLMDVYSRFGC---IEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV 258 (305)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 258 (305)
+.+...+..+..++...++ .++|..++++..+ | ++.....+...+...|++++|...|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455566666666654433 5777777777663 2 45666666677777777777777777777653
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.57 E-value=0.36 Score=33.61 Aligned_cols=81 Identities=10% Similarity=-0.083 Sum_probs=44.3
Q ss_pred CChHHHHHHHHhcCc-cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263 112 GRMDLATVVFDVMRG-CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190 (305)
Q Consensus 112 g~~~~a~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 190 (305)
|++......+-.+.. ....+.-+..+...|+-++-.+++..+.. +.+|+......+..||.+.|+..++.+++.+.-+
T Consensus 75 ~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 75 QNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp SCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 444444444444432 33344445566666666666666665322 2355556666666666666666666666666666
Q ss_pred cCC
Q 036263 191 QDF 193 (305)
Q Consensus 191 ~~~ 193 (305)
.|+
T Consensus 154 kG~ 156 (172)
T 1wy6_A 154 KGE 156 (172)
T ss_dssp TTC
T ss_pred hhh
Confidence 654
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.55 E-value=0.055 Score=38.63 Aligned_cols=62 Identities=11% Similarity=-0.093 Sum_probs=29.0
Q ss_pred CChhHHHHHHHHHHhcC---ChHHHHHHHHhcccCc-----hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 195 DNVRVCNTLMDVYSRFG---CIEFARQVFQRMHKRT-----LVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 195 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
++..+...+..++++++ +.+++..++++..+.+ ...+-.+.-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44444444444455544 3334555544443211 22233344444555555555555555555
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.45 E-value=0.099 Score=34.57 Aligned_cols=64 Identities=13% Similarity=-0.054 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQD------FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
+..-.-.|-..+.+.++++.|...++...+.- -.+...++..+..+|.+.|++++|...+++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33444556666677777777777777665431 12345566777777777777777777777665
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.12 E-value=0.16 Score=32.86 Aligned_cols=64 Identities=3% Similarity=-0.177 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHhcCcCC---hhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263 161 DYLTIISVLNVCANVRT---LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225 (305)
Q Consensus 161 ~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (305)
+...+..+..++...++ .++|..++++..+.+ +-+......+...+.+.|++++|...|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555555555543332 678888888888776 56677777788888888888888888888774
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.97 E-value=0.13 Score=40.95 Aligned_cols=103 Identities=10% Similarity=-0.051 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHh-----cCChHHHHHHHHhccc--C--chhhHHHHHHHHHhc-CCh
Q 036263 178 LGIGLWMHRYVPKQDFKDN---VRVCNTLMDVYSR-----FGCIEFARQVFQRMHK--R--TLVSWNSIIVGFAVN-GFV 244 (305)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~--~--~~~~~~~li~~~~~~-g~~ 244 (305)
...|...+++..+.+ |+ ...|..+...|.+ .|+.++|.+.|++..+ | +..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 356677777777764 44 6789999999999 4999999999999984 5 367777888888885 999
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 245 GEALEYFNLMQKGVFK--TDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 245 ~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
+++.+.+++....... |+....+.+ .-++|..+++++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhH
Confidence 9999999999997765 664444443 3345555555544
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.68 E-value=0.17 Score=42.51 Aligned_cols=54 Identities=9% Similarity=0.134 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263 201 NTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLM 254 (305)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 254 (305)
..++..+...|+.++|...++.+.. | +...|..++.++.+.|+..+|.+.|++.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444455555555544444432 2 3344555555555555555555555543
No 231
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.43 E-value=1.6 Score=35.23 Aligned_cols=139 Identities=11% Similarity=0.061 Sum_probs=88.8
Q ss_pred HHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHhcCcCChh-HHH
Q 036263 108 YAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEY----FRVMQISGVEPDYLTIISVLNVCANVRTLG-IGL 182 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 182 (305)
|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.+++++......++..+.....-+ .-.
T Consensus 43 y~~~~~~~eAidlL~~---------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~ 113 (312)
T 2wpv_A 43 YVRSKSYEHAIELISQ---------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLK 113 (312)
T ss_dssp HHHTTCHHHHHHHHHH---------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHH
T ss_pred HHHhcCHHHHHHHHHH---------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHH
Confidence 7788999999987654 33455667887766654 455566789999888888887765533221 123
Q ss_pred HHHHHH----hhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhh-----------------------HHH
Q 036263 183 WMHRYV----PKQD--FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS-----------------------WNS 233 (305)
Q Consensus 183 ~~~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----------------------~~~ 233 (305)
++.+.+ .+.| -.-++.....+...|.+.|++.+|+..|-.-...+... ...
T Consensus 114 ~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R 193 (312)
T 2wpv_A 114 DVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR 193 (312)
T ss_dssp HHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Confidence 333333 3333 12467888999999999999999998774222111111 112
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 036263 234 IIVGFAVNGFVGEALEYFNLMQ 255 (305)
Q Consensus 234 li~~~~~~g~~~~a~~~~~~m~ 255 (305)
.+--|...|+...|..+++...
T Consensus 194 aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 2334556778888888887654
No 232
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.41 E-value=0.32 Score=34.68 Aligned_cols=81 Identities=10% Similarity=-0.012 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC---ChhHHHHHHHHHhhcCCCC--ChhHHHHHHHHHHhcCChHHHH
Q 036263 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVR---TLGIGLWMHRYVPKQDFKD--NVRVCNTLMDVYSRFGCIEFAR 217 (305)
Q Consensus 143 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 217 (305)
...+.+.|.+..+.|. ++..+...+-.++++.+ +.+++..+++.+.+.+ .| ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455666666555554 67777777777888877 6668999999998875 34 3555666777789999999999
Q ss_pred HHHHhccc
Q 036263 218 QVFQRMHK 225 (305)
Q Consensus 218 ~~~~~~~~ 225 (305)
+.++.+.+
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999874
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.59 E-value=0.97 Score=41.35 Aligned_cols=123 Identities=11% Similarity=-0.003 Sum_probs=76.0
Q ss_pred HHHHHHHhcCcCC-hhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhccc-----------Cchhh-
Q 036263 165 IISVLNVCANVRT-LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC-IEFARQVFQRMHK-----------RTLVS- 230 (305)
Q Consensus 165 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~-----------~~~~~- 230 (305)
...++..+...++ .+.|..+++.+.+.+...+......++..+.+.++ --+|.+++.+..+ .+...
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455555556666 47788899998887521222222333333333332 2234444443321 11110
Q ss_pred --H---HHH----HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263 231 --W---NSI----IVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFDIM 289 (305)
Q Consensus 231 --~---~~l----i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 289 (305)
. ..| .+-+...|+++-|+++-++.... .| +-.+|..|..+|.+.|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 0 112 33366789999999999998874 45 4689999999999999999999998876
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.35 E-value=0.92 Score=38.03 Aligned_cols=58 Identities=7% Similarity=-0.055 Sum_probs=34.2
Q ss_pred HHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 166 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
..++.++...|+.+++...+..+.... +.+...|..+|.+|.+.|+..+|.+.|++..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555556666666666666555543 4555566666666666666666666666554
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.20 E-value=0.0012 Score=56.26 Aligned_cols=144 Identities=11% Similarity=0.054 Sum_probs=112.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc
Q 036263 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV 175 (305)
Q Consensus 96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 175 (305)
....+|+-|..++.+.+++.+|.+-|-+..+...|..+|.+..+.|++++-..++...++..-+| ..=+.|+-+|++.
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~ 129 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKT 129 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTS
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhh
Confidence 45567888889999999999999988888889999999999999999999999988766654344 4456889999999
Q ss_pred CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc------------------------CchhhH
Q 036263 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK------------------------RTLVSW 231 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~~ 231 (305)
++..+.++++ -.||..-...+.+-|...|.++.|.-+|..+.. .++.||
T Consensus 130 ~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 9987655543 246666667778888888888888888777651 267789
Q ss_pred HHHHHHHHhcCChHHHH
Q 036263 232 NSIIVGFAVNGFVGEAL 248 (305)
Q Consensus 232 ~~li~~~~~~g~~~~a~ 248 (305)
-.+-.+|...+.+.-|.
T Consensus 203 KeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp HHHTHHHHHSCTTTTTT
T ss_pred HHHHHHHhCchHHHHHH
Confidence 88888888777655443
No 236
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.10 E-value=3 Score=33.95 Aligned_cols=140 Identities=11% Similarity=0.057 Sum_probs=88.5
Q ss_pred HHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHhcCcCChh-HHH
Q 036263 108 YAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYF----RVMQISGVEPDYLTIISVLNVCANVRTLG-IGL 182 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 182 (305)
|.+.+++++|.+++-. -...+.+.|+...|-++- +-+.+.++++|......++..+.....-+ .-.
T Consensus 45 y~~~k~y~eAidLL~~---------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~ 115 (336)
T 3lpz_A 45 YSKQGNWAAAVDILAS---------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRK 115 (336)
T ss_dssp HHHTTCHHHHHHHHHH---------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred HHhhcCHHHHHHHHHH---------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHH
Confidence 7888999999987644 334556667766655554 55667889999988888888776655422 112
Q ss_pred HHHHHHh----hcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHH--------------------HHHH
Q 036263 183 WMHRYVP----KQD--FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN--------------------SIIV 236 (305)
Q Consensus 183 ~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------------------~li~ 236 (305)
.+.+.++ +.| -.-|......+...|.+.+++.+|+..|-.-.++....|. ..+-
T Consensus 116 ~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL 195 (336)
T 3lpz_A 116 RFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVL 195 (336)
T ss_dssp HHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 3333332 333 2346777888899999999999998877322222222222 2233
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 036263 237 GFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 237 ~~~~~g~~~~a~~~~~~m~~ 256 (305)
-|...++...|..+++...+
T Consensus 196 ~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 35566788888777666543
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.92 E-value=1.1 Score=41.11 Aligned_cols=51 Identities=20% Similarity=0.121 Sum_probs=37.8
Q ss_pred HHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263 204 MDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLM 254 (305)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 254 (305)
.+.+...|+++.|.++-++... | +-.+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445667888888888777763 4 4578888888888888888888777765
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.84 E-value=2.7 Score=35.96 Aligned_cols=163 Identities=11% Similarity=0.094 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHH-cCCCCCHHH--HHHHHHHhcCcCChhH--HHHHHHHHh---hcCCCC---Chh
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQI-SGVEPDYLT--IISVLNVCANVRTLGI--GLWMHRYVP---KQDFKD---NVR 198 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t--~~~ll~~~~~~~~~~~--a~~~~~~~~---~~~~~~---~~~ 198 (305)
...++..|...|+++...+.+..+.. +|..+...+ ...++.........+. -..+.+.+. +..+-. ...
T Consensus 59 l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erar 138 (445)
T 4b4t_P 59 LAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERAR 138 (445)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 55667777777888777666665543 333222221 1222222222232222 112222111 111112 233
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccC---------chhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCH--
Q 036263 199 VCNTLMDVYSRFGCIEFARQVFQRMHKR---------TLVSWNSIIVGFAVNGFVGEALEYFNLMQK----GVFKTDE-- 263 (305)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~-- 263 (305)
....|...|...|++.+|..+++++... -+..+..-++.|...+++..|..++++... ....|+.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 4567888899999999999999988621 135677778889999999999999888643 2222322
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 036263 264 VSFTGALTACSHAGLIEDGLQYFDIMKKI 292 (305)
Q Consensus 264 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (305)
..+...+..+...+++.+|-..|.+....
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34566667777788888888777776533
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.83 E-value=1.4 Score=35.23 Aligned_cols=87 Identities=11% Similarity=-0.023 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCc-------cccHHHHHHHHHcC-----CChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhcCc-CChh
Q 036263 115 DLATVVFDVMRG-------CDFWTALLNGFVKR-----DYFEEALEYFRVMQISGVEP--DYLTIISVLNVCANV-RTLG 179 (305)
Q Consensus 115 ~~a~~~~~~~~~-------~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~-~~~~ 179 (305)
..|...+++..+ ...|..+...|.+. |+.++|.+.|++..+. .| +..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHH
Confidence 445555555533 33577788888874 8888888888887774 45 356666677777774 8888
Q ss_pred HHHHHHHHHhhcCCC--CChhHHHHH
Q 036263 180 IGLWMHRYVPKQDFK--DNVRVCNTL 203 (305)
Q Consensus 180 ~a~~~~~~~~~~~~~--~~~~~~~~l 203 (305)
++.+.+++....... |+....+.+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 888888888877655 555544443
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.97 E-value=0.81 Score=31.38 Aligned_cols=86 Identities=9% Similarity=-0.130 Sum_probs=54.3
Q ss_pred cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhcccCc-----hhhHHHHHHHHHhcCChHH
Q 036263 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF---ARQVFQRMHKRT-----LVSWNSIIVGFAVNGFVGE 246 (305)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~ 246 (305)
......+.+-+......| .++..+--.+..++.+...... +..+++++.+.+ ....-.+.-++.+.|++++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 334445555555555555 3666666666777777776555 777777766432 1233445667788888888
Q ss_pred HHHHHHHHHHCCCCCCH
Q 036263 247 ALEYFNLMQKGVFKTDE 263 (305)
Q Consensus 247 a~~~~~~m~~~g~~p~~ 263 (305)
|.+.++.+.+ +.|+.
T Consensus 93 A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 93 ALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHH--hCCCC
Confidence 8888888877 45643
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.94 E-value=2.4 Score=29.04 Aligned_cols=82 Identities=11% Similarity=-0.045 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhH---HHHHHHHHhhcCCCC--ChhHHHHHHHHHHhcCChHHH
Q 036263 142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI---GLWMHRYVPKQDFKD--NVRVCNTLMDVYSRFGCIEFA 216 (305)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a 216 (305)
.+..+.+-|.+....|. |+..+--.+..++.+..+... +..+++.+.+.+ .| .....-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34555556665555553 777777777778888877665 888888888765 23 334455567788999999999
Q ss_pred HHHHHhccc
Q 036263 217 RQVFQRMHK 225 (305)
Q Consensus 217 ~~~~~~~~~ 225 (305)
.+.++.+.+
T Consensus 94 ~~~~~~lL~ 102 (126)
T 1nzn_A 94 LKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998873
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.56 E-value=3.4 Score=29.29 Aligned_cols=48 Identities=10% Similarity=-0.014 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
++.++|.++|+.+++.+ +--+.+|....+--.+.|++..|.+++.+..
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 45555555555554431 1114555555555555555555555555544
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.11 E-value=1.8 Score=28.31 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=20.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 248 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+-++.+....+.|++....+.+++|-+..++..|..+|+.++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 30 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444444444444455544455555555444444
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.20 E-value=6.1 Score=38.28 Aligned_cols=143 Identities=8% Similarity=0.001 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCccc-cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-------------------
Q 036263 101 STALLDMYAKFGRMDLATVVFDVMRGCD-FWTALLNGFVKRDYFEEALEYFRVMQISGVEP------------------- 160 (305)
Q Consensus 101 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p------------------- 160 (305)
...++..+.+.+..+.+.++....+... .--.+..++...|++++|.+.|.+.- .|+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhccccccccccc
Confidence 3456666777888888888777766522 22345577888999999999997642 12111
Q ss_pred ----CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhcccC--chhh
Q 036263 161 ----DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN----VRVCNTLMDVYSRFGCIEFARQVFQRMHKR--TLVS 230 (305)
Q Consensus 161 ----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~ 230 (305)
-..=|..++..+.+.+..+.+.++-+...+..-+.+ ...|..+.+++...|++++|...+-.++.. -...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c 973 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC 973 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence 012256677777778888888777766655432222 226788899999999999998888777643 2245
Q ss_pred HHHHHHHHHhcCCh
Q 036263 231 WNSIIVGFAVNGFV 244 (305)
Q Consensus 231 ~~~li~~~~~~g~~ 244 (305)
...++...|..|..
T Consensus 974 Lr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHCCH
T ss_pred HHHHHHHHHhCCCh
Confidence 55666666655543
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.24 E-value=4.5 Score=26.40 Aligned_cols=47 Identities=6% Similarity=-0.030 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
.-++.+-++.+...++.|++.+..+.+++|.+.+++.-|.++|+-++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33556666666777777777777777788777777777777777776
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.46 E-value=4.2 Score=28.12 Aligned_cols=31 Identities=3% Similarity=-0.022 Sum_probs=16.9
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
|+.......+++|.+.+|+..|..+|+-.+.
T Consensus 86 PeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 86 PEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555555555555555555443
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.04 E-value=8.3 Score=27.36 Aligned_cols=109 Identities=10% Similarity=-0.105 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHhcCcCCh------hHHHHHHHHHhhcCCCCChhH-HHHHHH------HHHhcCChHHHHHHHHhccc--
Q 036263 161 DYLTIISVLNVCANVRTL------GIGLWMHRYVPKQDFKDNVRV-CNTLMD------VYSRFGCIEFARQVFQRMHK-- 225 (305)
Q Consensus 161 ~~~t~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~li~------~~~~~g~~~~a~~~~~~~~~-- 225 (305)
|..+|-..+...-+.|+. ++..++|++.... ++|+... |..-+. .+...++.++|.++|+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 566666666666666777 7777888877664 4554211 111111 11233677777888777752
Q ss_pred -CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036263 226 -RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271 (305)
Q Consensus 226 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 271 (305)
.-...|-....--.++|+.++|.+++.+....+.+| ...+...++
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 223444444445567888888888888877766544 344444443
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.32 E-value=31 Score=33.42 Aligned_cols=152 Identities=11% Similarity=0.085 Sum_probs=99.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCc----------------------------cccHHHHHHHHHcCCChHHHHHHHHHHH
Q 036263 103 ALLDMYAKFGRMDLATVVFDVMRG----------------------------CDFWTALLNGFVKRDYFEEALEYFRVMQ 154 (305)
Q Consensus 103 ~ll~~~~~~g~~~~a~~~~~~~~~----------------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (305)
.+..++...|++++|.+.|++.-. ..-|.-++..+.+.|.++.+.++-+...
T Consensus 847 l~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi 926 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD 926 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345678889999999999988732 0116778888888999988887776654
Q ss_pred HcC-CCC-C--HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH------------HHH
Q 036263 155 ISG-VEP-D--YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF------------ARQ 218 (305)
Q Consensus 155 ~~g-~~p-~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~------------a~~ 218 (305)
+.. -.+ + ...|..++.++...|++++|...+-.+..... -......|+...|+.|..+. ..+
T Consensus 927 ~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~ 1004 (1139)
T 4fhn_B 927 ASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDN 1004 (1139)
T ss_dssp HHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHH
T ss_pred HhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHH
Confidence 432 121 1 23578899999999999999999887765543 34566777777777665543 333
Q ss_pred HHHhccc-----Cc-hhhHHHHHHHHHhcCChHHHHH-HHHHHHH
Q 036263 219 VFQRMHK-----RT-LVSWNSIIVGFAVNGFVGEALE-YFNLMQK 256 (305)
Q Consensus 219 ~~~~~~~-----~~-~~~~~~li~~~~~~g~~~~a~~-~~~~m~~ 256 (305)
++..-.+ .+ +.-|..|=.-+..+|++.+|-. +|+...+
T Consensus 1005 IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 1005 LLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 3322111 11 1224455555677888877655 4665543
No 249
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.30 E-value=6.5 Score=25.55 Aligned_cols=86 Identities=8% Similarity=-0.009 Sum_probs=57.8
Q ss_pred ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263 177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 256 (305)
..++|..+-+.+...+. ...+--+=+..+...|++++|..+.+...-||...|-.+.. .+.|--+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45667777776666552 33333333556778888888888888888888888876644 467777777777777777
Q ss_pred CCCCCCHHHHH
Q 036263 257 GVFKTDEVSFT 267 (305)
Q Consensus 257 ~g~~p~~~~~~ 267 (305)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 34444443
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.94 E-value=9.9 Score=27.36 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 199 VCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
.---+-.+|.+.+++++|..+++.++
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 33346667777777777777777765
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.87 E-value=6.9 Score=25.48 Aligned_cols=87 Identities=10% Similarity=0.011 Sum_probs=57.6
Q ss_pred CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036263 176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 255 (305)
...++|..+-+.+...+. ...+--+=+..+...|++++|..+.+...-||...|-.+.. .+.|--+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345667777776666552 33333333556778888888888888888888888877644 35666777777777777
Q ss_pred HCCCCCCHHHHH
Q 036263 256 KGVFKTDEVSFT 267 (305)
Q Consensus 256 ~~g~~p~~~~~~ 267 (305)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 765 34444443
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.99 E-value=9.5 Score=26.42 Aligned_cols=47 Identities=6% Similarity=-0.030 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
.-+..+-++.+...++.|++.+..+.+++|.+.+++.-|.++|+-++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33566667777788889999999999999999999999999999887
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.25 E-value=10 Score=26.18 Aligned_cols=68 Identities=7% Similarity=0.046 Sum_probs=42.7
Q ss_pred CCChhHHHHHHHHHHhcCCh---HHHHHHHHhccc--C--chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036263 194 KDNVRVCNTLMDVYSRFGCI---EFARQVFQRMHK--R--TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263 (305)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~--~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 263 (305)
.|+..+--....++.++... .++..+++++.+ | .-..+--+.-++.+.|++++|.+..+.+.+ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 45555555556666666654 356666666553 2 223445566777888888888888888777 45654
No 254
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=81.68 E-value=10 Score=25.94 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCc---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHH
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHKRT---LVSWNSIIVGFAVNGF--VGEALEYFNLMQKGVFKTDEVS 265 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~ 265 (305)
...++.-|...|+.++|.+.++++..|. ......+..++=+.++ .+.+..++..+.+.|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4566777777777777777777776552 2233333444444322 3556677777777665444444
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.62 E-value=7.2 Score=33.08 Aligned_cols=91 Identities=13% Similarity=-0.040 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHH---cCCCCCHHHH--H
Q 036263 100 VSTALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQI---SGVEPDYLTI--I 166 (305)
Q Consensus 100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~--~ 166 (305)
+...+...|.+.|+++.|.+.|.++.. ...+-.+|+.+...+++..+...+++... .+-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445566677777777777777777654 33466666777777777777777766543 2222322111 1
Q ss_pred HHHHHhcCcCChhHHHHHHHHHhh
Q 036263 167 SVLNVCANVRTLGIGLWMHRYVPK 190 (305)
Q Consensus 167 ~ll~~~~~~~~~~~a~~~~~~~~~ 190 (305)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111223455666666666655443
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.09 E-value=6.9 Score=30.72 Aligned_cols=112 Identities=9% Similarity=-0.002 Sum_probs=66.4
Q ss_pred HHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C----chhhHHHHHHHHHhcCC
Q 036263 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R----TLVSWNSIIVGFAVNGF 243 (305)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~ 243 (305)
....+.|+++++.+....-++.. +.|...-..+++.+|-.|+++.|.+-++...+ | ....|..+|.+-..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~--- 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA--- 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH---
Confidence 34567788888887777777765 66777777888888888888888777766653 2 23344444444211
Q ss_pred hHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHH
Q 036263 244 VGEALEYFNLMQKGVFKT-----DEVSFTGALTACS--HAGLIEDGLQYFDIMKKI 292 (305)
Q Consensus 244 ~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 292 (305)
-.+....+-.| ...-...++.+.. ..|+.+.|.++-......
T Consensus 81 -------R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 81 -------RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -------HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11111111111 2233444454443 457888888877777633
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.46 E-value=14 Score=26.62 Aligned_cols=121 Identities=9% Similarity=-0.042 Sum_probs=59.0
Q ss_pred cCCCCCH--HHHHHHHHHhcCcCChhHHHHHHHHHhhcC-CCCC-------hhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263 156 SGVEPDY--LTIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDN-------VRVCNTLMDVYSRFGCIEFARQVFQRMHK 225 (305)
Q Consensus 156 ~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (305)
.|+.|.. .++-.-+..+...+.++.|.-+.+.+.... ..++ ..++..+.+++...|++..|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4555643 334455666777777777777666654321 1122 12455666777777777777777776431
Q ss_pred ------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263 226 ------RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289 (305)
Q Consensus 226 ------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 289 (305)
++..++..+ ........ .....++...--.+-.+|.+.+++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~~~~----~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPST----GNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCccccc----cccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111111111 00000000 0012223333334778899999999999987743
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.45 E-value=26 Score=29.80 Aligned_cols=228 Identities=9% Similarity=0.039 Sum_probs=128.1
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChH--HHHHH
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLY-GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMD--LATVV 120 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~ 120 (305)
+......++..|...|+++...+.+..+... |..+.. ...+++. ++.........+ .-..+
T Consensus 55 ~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~--------------~~~~l~~~~~~d~~~~~~~ 118 (445)
T 4b4t_P 55 SKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQK--------------VMEYLKSSKSLDLNTRISV 118 (445)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHH--------------HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHH--------------HHHHHhcCCchhHHHHHHH
Confidence 4556777888888888888887777665543 333222 2222222 222222223222 22333
Q ss_pred HHhcCc------------cccHHHHHHHHHcCCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHhcCcCChhHHHH
Q 036263 121 FDVMRG------------CDFWTALLNGFVKRDYFEEALEYFRVMQIS--GVEPD---YLTIISVLNVCANVRTLGIGLW 183 (305)
Q Consensus 121 ~~~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~t~~~ll~~~~~~~~~~~a~~ 183 (305)
.+.... ......|...+...|++.+|.+++.++... |.... ...+...+..|...+++..|..
T Consensus 119 i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~ 198 (445)
T 4b4t_P 119 IETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATV 198 (445)
T ss_dssp HHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 333322 122356778888999999999999988643 22221 4466777888999999999999
Q ss_pred HHHHHhh----cCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhccc-----CchhhHHH----HHHHHHhcCChHHHH
Q 036263 184 MHRYVPK----QDFKDN--VRVCNTLMDVYSRFGCIEFARQVFQRMHK-----RTLVSWNS----IIVGFAVNGFVGEAL 248 (305)
Q Consensus 184 ~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~----li~~~~~~g~~~~a~ 248 (305)
++..... ...+|+ ...+...+..+...+++.+|.+.|.++-. .+...+.. ++....-.+....-.
T Consensus 199 ~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~ 278 (445)
T 4b4t_P 199 LSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQN 278 (445)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTH
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHH
Confidence 8887642 222232 34567778888888999998888777752 12222221 111222222222222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcc--CcHHHHHHHHH
Q 036263 249 EYFNLMQKGVFKTDEVSFTGALTACSHA--GLIEDGLQYFD 287 (305)
Q Consensus 249 ~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~ 287 (305)
.+.........-++...|..++.+|... .+++.+.+.|.
T Consensus 279 ~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 279 DLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 2333322222235567788888887653 34555544443
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.97 E-value=11 Score=31.92 Aligned_cols=98 Identities=6% Similarity=-0.138 Sum_probs=70.2
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc---CCCCChhH--
Q 036263 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGV--EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ---DFKDNVRV-- 199 (305)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~-- 199 (305)
..++..+...+.+.|+++.|.+.+.++..... .--...+-.++..+...+++..+...+.+.... +-.++...
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 44678899999999999999999999987533 334667888899999999999999998887542 22222211
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
...-...+...+++.+|.+.|-+..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHh
Confidence 1111223346788999888877654
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.73 E-value=13 Score=25.96 Aligned_cols=68 Identities=7% Similarity=0.046 Sum_probs=47.3
Q ss_pred CCChhHHHHHHHHHHhcCCh---HHHHHHHHhccc--C--chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036263 194 KDNVRVCNTLMDVYSRFGCI---EFARQVFQRMHK--R--TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263 (305)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~--~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 263 (305)
.|+..+--....++.++... .++..+++++.+ | .-...-.+.-++.+.|++++|.++.+.+.+ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 56666666667777777764 456677777653 2 223444566788899999999999999888 56754
No 261
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=78.96 E-value=8.5 Score=27.27 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCc---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHKRT---LVSWNSIIVGFAVNGF--VGEALEYFNLMQKGVFKT 261 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p 261 (305)
...++.-|...|+.++|.+.++++..|. ......+..++=+.++ .+.+..++..+.+.|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3445555555666666666666655431 1222223333333211 234455555555555433
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.50 E-value=20 Score=26.74 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263 143 FEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD 195 (305)
Q Consensus 143 ~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (305)
..++.++|..|...|+--. +.-|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3455555555555444332 3334444444445555555555555555544444
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.21 E-value=28 Score=25.95 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=31.3
Q ss_pred cCChHHHHHHHHhcccC-----chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036263 210 FGCIEFARQVFQRMHKR-----TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261 (305)
Q Consensus 210 ~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 261 (305)
.+...++..+|.-|... -..-|......+-..|++.+|.++|+.-.+.+-+|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33355666666666542 33445555555666677777777777766666666
No 264
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=71.62 E-value=23 Score=27.14 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=49.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 036263 133 LLNGFVKRDYFEEALEYFRVMQIS--GVEP----DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206 (305)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 206 (305)
-+..+....++++|.+++++.++. ++++ +.......+..-.....-..+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 455666667777777777655431 2222 112223333333344444445555555533 4456666677788
Q ss_pred HHhcCChHHHHHHHHhcc
Q 036263 207 YSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~ 224 (305)
+.+.|+.++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 888888888888775544
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.80 E-value=45 Score=27.83 Aligned_cols=165 Identities=10% Similarity=-0.059 Sum_probs=95.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC---HhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLY-GTNPS---HITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF 121 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~---~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 121 (305)
.+...+...|.+.|+.++..+++...+.. +.-|- ......++..+...++.. ... ++-..+.+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~----~~~---------~~~~~~~~ 86 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGT----GIE---------VQLCKDCI 86 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCH----HHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcH----HHH---------HHHHHHHH
Confidence 45667888999999999999999887543 22222 223334444443332210 111 11122222
Q ss_pred HhcCc-cccH------HHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhcCcCChhHHHHHHHHHh
Q 036263 122 DVMRG-CDFW------TALLNGFVKRDYFEEALEYFRVMQISGVEPD-----YLTIISVLNVCANVRTLGIGLWMHRYVP 189 (305)
Q Consensus 122 ~~~~~-~~~~------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 189 (305)
++..+ ..+| ..++..|...|++.+|.+++.++.+.--..| ...+..-+..|...++...+...+....
T Consensus 87 ~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 87 EWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 22222 2333 2577888889999999888888866421222 3445566677888888888888887765
Q ss_pred hc--CCCCChhHHH----HHHHHHH-hcCChHHHHHHHHhc
Q 036263 190 KQ--DFKDNVRVCN----TLMDVYS-RFGCIEFARQVFQRM 223 (305)
Q Consensus 190 ~~--~~~~~~~~~~----~li~~~~-~~g~~~~a~~~~~~~ 223 (305)
.. .+.+++.+.. .-...+. ..+++..|...|-+.
T Consensus 167 ~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 167 TTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 42 2323333222 2233345 678888887776554
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.39 E-value=13 Score=28.58 Aligned_cols=19 Identities=0% Similarity=-0.123 Sum_probs=10.2
Q ss_pred HHHHHHHhcCChhHHHHHH
Q 036263 50 SSISRHCRSGCILEAALEF 68 (305)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~ 68 (305)
..+...++.|+++....++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH
Confidence 3455556677765444443
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.57 E-value=54 Score=27.40 Aligned_cols=153 Identities=12% Similarity=0.029 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCc----------cccHHHHHHHHHcC-CChHHHHHHHHHHHHcCCCCCHHHH----
Q 036263 101 STALLDMYAKFGRMDLATVVFDVMRG----------CDFWTALLNGFVKR-DYFEEALEYFRVMQISGVEPDYLTI---- 165 (305)
Q Consensus 101 ~~~ll~~~~~~g~~~~a~~~~~~~~~----------~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~t~---- 165 (305)
...|...|.+.|+.++..+++..... ...-..++..+... +..+.-.++..+..+..- -+..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 35677789999999999999988866 23356777777664 334444455544433210 111233
Q ss_pred --HHHHHHhcCcCChhHHHHHHHHHhhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhccc------CchhhHH
Q 036263 166 --ISVLNVCANVRTLGIGLWMHRYVPKQDFKDN-----VRVCNTLMDVYSRFGCIEFARQVFQRMHK------RTLVSWN 232 (305)
Q Consensus 166 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~~~~~~ 232 (305)
.-+...|...|++.+|..++..+.+.=-..| ..+|-.-++.|...+++.++...+..... ++...-.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 2578889999999999988888865311111 34566778889999999999988877652 2222111
Q ss_pred H----HHHHHH-hcCChHHHHHHHHHH
Q 036263 233 S----IIVGFA-VNGFVGEALEYFNLM 254 (305)
Q Consensus 233 ~----li~~~~-~~g~~~~a~~~~~~m 254 (305)
. -...+. ..++|..|...|-+.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 1 122345 788898888776654
No 268
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.57 E-value=16 Score=27.32 Aligned_cols=85 Identities=4% Similarity=-0.135 Sum_probs=43.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCcc----
Q 036263 52 ISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGC---- 127 (305)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---- 127 (305)
+...++.|+.+.+..+++.+.+.|..++.... .- .+.+...+..|+.+-+..+++.-.+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~---------------~g-~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 76 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN---------------LR-QTPLHLAVITTLPSVVRLLVTAGASPMALD 76 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT---------------TS-CCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccc---------------cC-CCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence 45556678888888888877766655543211 00 11223345567776666665543221
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHH
Q 036263 128 DFWTALLNGFVKRDYFEEALEYFRV 152 (305)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~ 152 (305)
..-.+.+...+..|+.+-+..+++.
T Consensus 77 ~~g~t~l~~A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 77 RHGQTAAHLACEHRSPTCLRALLDS 101 (241)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 1112233444456666555555444
No 269
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=65.32 E-value=40 Score=25.06 Aligned_cols=69 Identities=10% Similarity=0.035 Sum_probs=49.8
Q ss_pred HHHHHHHHc---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCCh-----hHHHHHHHHHhhcCCCCChhHH
Q 036263 131 TALLNGFVK---RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL-----GIGLWMHRYVPKQDFKDNVRVC 200 (305)
Q Consensus 131 ~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~ 200 (305)
-.+|+++.+ -.+.+.|+-.+.+|.+.| .|....-..++.+.-..|.- ..|...++.....|.+-.....
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~L 91 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPL 91 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 345666654 478999999999999999 88877778888887777653 3566667777777855443333
No 270
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.14 E-value=42 Score=29.16 Aligned_cols=65 Identities=6% Similarity=0.006 Sum_probs=39.3
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCC--HHHHH-HHHHHhcCcCChhHHHHHHHHHhhc
Q 036263 127 CDFWTALLNGFVKRDYFEEALEYFRVMQIS-GVEPD--YLTII-SVLNVCANVRTLGIGLWMHRYVPKQ 191 (305)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~--~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~ 191 (305)
...+|.+++.|...+.++.|..+.....-- .-.++ ..+|. .+-..+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 445888888888888888888888765310 00111 12222 2233445667788888777776554
No 271
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=63.11 E-value=17 Score=24.77 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC--ChhHHHHHHHHHhhcCC
Q 036263 131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR--TLGIGLWMHRYVPKQDF 193 (305)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~ 193 (305)
+.++.-|...|+.++|.+.++++....+. ...+...+..++-+.+ ..+.+..++..+.+.|+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34555566666666666666665421111 1223333344444332 13445555555555543
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.53 E-value=26 Score=25.16 Aligned_cols=51 Identities=10% Similarity=-0.001 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC
Q 036263 146 ALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN 196 (305)
Q Consensus 146 a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (305)
+.++|..|...|+--. +.-|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4556666666655432 34445555555566666666666666666655553
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=62.14 E-value=21 Score=28.03 Aligned_cols=68 Identities=15% Similarity=0.027 Sum_probs=50.0
Q ss_pred HHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 036263 205 DVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV--FKTDEVSFTGALTA 272 (305)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~ 272 (305)
....+.|.+++|......-.+ | |...-..++.-+|-.|+++.|.+=++-..+.. ..|-..+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 456678899999887776653 3 66777788999999999999999888877742 23334566666655
No 274
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=60.28 E-value=34 Score=23.76 Aligned_cols=37 Identities=3% Similarity=0.097 Sum_probs=17.3
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 187 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
.+.+.|+.++.. -..++..+...+..-.|.++++.+.
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~ 48 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALE 48 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHG
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 344555554433 2233334444444445555655554
No 275
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=59.82 E-value=47 Score=24.61 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=45.4
Q ss_pred HHHHHHHHc---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCCh-----hHHHHHHHHHhhcCC
Q 036263 131 TALLNGFVK---RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTL-----GIGLWMHRYVPKQDF 193 (305)
Q Consensus 131 ~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~ 193 (305)
-.+|+++.+ -.+.+.|+-.+.+|.+.|-.|....-..++.+.-..|.- ..|...++.....|.
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 345666654 478999999999999999888877777777777666643 345556666666663
No 276
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=59.51 E-value=34 Score=24.67 Aligned_cols=170 Identities=11% Similarity=-0.008 Sum_probs=82.3
Q ss_pred HHhcCChHHHHHHHHhcC-c-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHhcCcCCh
Q 036263 108 YAKFGRMDLATVVFDVMR-G-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL---TIISVLNVCANVRTL 178 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~-~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~ 178 (305)
.+..|+.+....++..-. + ..-++.| ...++.|+.+- ++.+.+.|..++.. ..+.+ ...+..|+.
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~ 85 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPL-NIAVHNNDIEI----AKALIDRGADINLQNSISDSPY-LYAGAQGRT 85 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHH-HHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCH
Confidence 456788888888887654 2 1123333 34445566544 34444556555422 22333 333455666
Q ss_pred hHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-cc---CchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263 179 GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM-HK---RTLVSWNSIIVGFAVNGFVGEALEYFNLM 254 (305)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 254 (305)
+.+..+++.-...--..+..-. +.+...+..|+.+.+..+++.- .. ++..-++.+..+.........-.++++.+
T Consensus 86 ~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~L 164 (201)
T 3hra_A 86 EILAYMLKHATPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL 164 (201)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHH
T ss_pred HHHHHHHhccCcccccccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHH
Confidence 6655555332100001111111 2234456678888777777765 22 23333444544443333233345666777
Q ss_pred HHCCCCCCHHHHH--HHHHHHhccCcHHHHHH
Q 036263 255 QKGVFKTDEVSFT--GALTACSHAGLIEDGLQ 284 (305)
Q Consensus 255 ~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~ 284 (305)
.+.|..|+..... ..+....+.|+.+-+..
T Consensus 165 l~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~ 196 (201)
T 3hra_A 165 MENGADQSIKDNSGRTAMDYANQKGYTEISKI 196 (201)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHCCCCCCccCCCCCCHHHHHHHcCCHhHHHH
Confidence 7777666532211 12333344455554443
No 277
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=59.34 E-value=68 Score=25.78 Aligned_cols=161 Identities=17% Similarity=0.141 Sum_probs=93.9
Q ss_pred HHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHH----HH
Q 036263 108 YAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG----LW 183 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a----~~ 183 (305)
....|++=+|.+. |.++..-|.+.+++++|.+++..--. .+.+.|+...| .-
T Consensus 23 ~I~~G~yYEAhQ~---------~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~l 78 (312)
T 2wpv_A 23 KIKAGDYYEAHQT---------LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFY 78 (312)
T ss_dssp HHHHTCHHHHHHH---------HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHH
T ss_pred HhhccChHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHH
Confidence 3445676667665 56688889999999999998865321 12233444333 33
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCChH-HHHHHHHhcc----------cCchhhHHHHHHHHHhcCChHHHHHHHH
Q 036263 184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE-FARQVFQRMH----------KRTLVSWNSIIVGFAVNGFVGEALEYFN 252 (305)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 252 (305)
+.+.+.+.+++++......++..+.....-+ .-.++++++. .-+......+...|.+.|++.+|..-|-
T Consensus 79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4555566677777777777776665533211 1122333322 1266777888888888888888876441
Q ss_pred ----------------HHHHC--CCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHHHHH
Q 036263 253 ----------------LMQKG--VFKTDEVSF-TGALTACSHAGLIEDGLQYFDIMKKI 292 (305)
Q Consensus 253 ----------------~m~~~--g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (305)
...+. |.+-+...| ...+-.|.-.|+...|..+++...+.
T Consensus 159 ~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 159 LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 12221 322122222 22233445668999999999987643
No 278
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=59.30 E-value=34 Score=22.28 Aligned_cols=16 Identities=25% Similarity=0.080 Sum_probs=7.8
Q ss_pred HhcCChHHHHHHHHhc
Q 036263 109 AKFGRMDLATVVFDVM 124 (305)
Q Consensus 109 ~~~g~~~~a~~~~~~~ 124 (305)
...|++++|..+.+..
T Consensus 50 mNrG~Yq~Al~l~~~~ 65 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGN 65 (115)
T ss_dssp HHTTCHHHHHGGGTTC
T ss_pred HcchhHHHHHHhcCCC
Confidence 3445555555544444
No 279
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=59.08 E-value=72 Score=25.96 Aligned_cols=159 Identities=8% Similarity=0.002 Sum_probs=85.9
Q ss_pred HHhcCCh---HHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhH----
Q 036263 108 YAKFGRM---DLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI---- 180 (305)
Q Consensus 108 ~~~~g~~---~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~---- 180 (305)
....|++ =+|.+. |.++..-|.+.+++++|.+++..--. .+.+.|+...
T Consensus 22 ~I~~G~y~~~YEAHQ~---------~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQE---------TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHCCHHHHHHHHHH---------HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHH
T ss_pred HHhCCCCccccHHHHH---------HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHH
Confidence 4456777 566655 55677889999999999998754321 1122233322
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChH-HHHHHHHhcc----------cCchhhHHHHHHHHHhcCChHHHHH
Q 036263 181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE-FARQVFQRMH----------KRTLVSWNSIIVGFAVNGFVGEALE 249 (305)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~a~~ 249 (305)
+.-+++.+.+.++++|......++..+.....-+ .-.++.+++. .-|......+...|.+.+++.+|..
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 3333455556666666666666666655544311 1122222222 1255566666677777777666654
Q ss_pred HH----------------HHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263 250 YF----------------NLMQKGV-FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK 291 (305)
Q Consensus 250 ~~----------------~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (305)
-| +...+.+ -.+|...-.. +--|.-.++...|..+++...+
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRa-VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARA-VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHH
Confidence 33 2222222 1112222222 3344556788889888877763
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.50 E-value=28 Score=26.71 Aligned_cols=91 Identities=8% Similarity=-0.025 Sum_probs=42.1
Q ss_pred HHHHHhcCChHHHHHHHHhcc-c---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccC
Q 036263 204 MDVYSRFGCIEFARQVFQRMH-K---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS--FTGALTACSHAG 277 (305)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g 277 (305)
+...+..|+.+-+..+++... . .+....+.+.. .+..++.....++++.+.+.|..++... -...+...++.|
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 333445566666666665422 1 12222233322 3345555555666666677776554321 112233344456
Q ss_pred cHHHHHHHHHHHHHHhCCCCCc
Q 036263 278 LIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 278 ~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
..+-+..+++ ..|..++.
T Consensus 231 ~~~~v~~Ll~----~~g~~~~~ 248 (285)
T 1wdy_A 231 HLGLVQRLLE----QEHIEIND 248 (285)
T ss_dssp CHHHHHHHHH----SSSCCTTC
T ss_pred CHHHHHHHHh----ccCCCccc
Confidence 6554433332 24555543
No 281
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=58.06 E-value=49 Score=24.49 Aligned_cols=178 Identities=11% Similarity=-0.027 Sum_probs=94.3
Q ss_pred HHHHHhcCChHHHHHHHHhcC-c-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhcC
Q 036263 105 LDMYAKFGRMDLATVVFDVMR-G-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGV----EPDYLTIISVLNVCAN 174 (305)
Q Consensus 105 l~~~~~~g~~~~a~~~~~~~~-~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~t~~~ll~~~~~ 174 (305)
+...++.|+.+....+++.-. + ..-++ .+...+..|+.+-+..+++.-..... ..|..-.+.|.. .+.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~-A~~ 84 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGET-ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI-AVI 84 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH-HHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH-HHH
Confidence 444667788888888887621 1 11233 44455566777766666554221100 011122333333 344
Q ss_pred cCChhHHHHHHHHHhhcCCCCChh---------------HHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHH
Q 036263 175 VRTLGIGLWMHRYVPKQDFKDNVR---------------VCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIV 236 (305)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~ 236 (305)
.|+.+.+.. +.+.|..++.. .-.+.+...+..|+.+-+..+++.-..+ |..-.+ .+.
T Consensus 85 ~~~~~~v~~----Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t-~L~ 159 (232)
T 2rfa_A 85 NQNVNLVRA----LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT-VLH 159 (232)
T ss_dssp TTCHHHHHH----HHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHH
T ss_pred cCCHHHHHH----HHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-HHH
Confidence 566554444 44445444331 1223344456678887777777654332 222222 345
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 237 GFAVNGFVGEALEYFNLMQKGVFKT---------DEVSFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 237 ~~~~~g~~~~a~~~~~~m~~~g~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
..+..|+.+-+..+++.+.+.|..+ |..-... +...++.|+.+-+..+++.=.
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcCc
Confidence 5567888888888888888877533 2333333 334445677777666665443
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=57.85 E-value=23 Score=24.99 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC--ChhHHHHHHHHHhhcCCC
Q 036263 131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR--TLGIGLWMHRYVPKQDFK 194 (305)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~ 194 (305)
+.++.-|...|+.++|.+.++++....+ ....+...+..++-+.+ ..+.+..++..+.+.++-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4566666666777777777766642111 11233334444444422 234455566666555543
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=57.76 E-value=59 Score=24.62 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=26.0
Q ss_pred HHHHHHHhcccC-----chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036263 215 FARQVFQRMHKR-----TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT 261 (305)
Q Consensus 215 ~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 261 (305)
++..+|.-|... -..-|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444555555532 22345555555556666666666666666655555
No 284
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=57.46 E-value=37 Score=22.14 Aligned_cols=78 Identities=15% Similarity=0.120 Sum_probs=51.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV 219 (305)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 219 (305)
....++|..+-+.+...|. ...+--+-+..+...|++++|..+.+.+ ..||...|-+|-. .+.|..+++..-
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHH
Confidence 3457777777777766543 3333334455677888888888876655 3678877777655 577777777777
Q ss_pred HHhccc
Q 036263 220 FQRMHK 225 (305)
Q Consensus 220 ~~~~~~ 225 (305)
+-++..
T Consensus 92 L~~la~ 97 (116)
T 2p58_C 92 LNRLAR 97 (116)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 766653
No 285
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=57.45 E-value=66 Score=26.11 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCcc
Q 036263 102 TALLDMYAKFGRMDLATVVFDVMRGC 127 (305)
Q Consensus 102 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 127 (305)
..++.=|...|+.++|...++++...
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 55666666667777777777776543
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=56.91 E-value=51 Score=23.60 Aligned_cols=50 Identities=10% Similarity=-0.016 Sum_probs=33.3
Q ss_pred HHHHHHHhcccC-----chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036263 215 FARQVFQRMHKR-----TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264 (305)
Q Consensus 215 ~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 264 (305)
++..+|..|... -..-|......+-..|++.+|.++|+.-.+.+..|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 355666666643 33456666666777788888888888877777777543
No 287
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=56.03 E-value=48 Score=22.98 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=43.4
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChH
Q 036263 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214 (305)
Q Consensus 151 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 214 (305)
+.+++.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|..--++.+.+.|-+.
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 4467788777643 33444444455666778999999988876677777777778888777543
No 288
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=55.62 E-value=63 Score=24.22 Aligned_cols=68 Identities=12% Similarity=0.275 Sum_probs=49.8
Q ss_pred HHHHHHHHHc---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC-----hhHHHHHHHHHhhcCCCCCh
Q 036263 130 WTALLNGFVK---RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT-----LGIGLWMHRYVPKQDFKDNV 197 (305)
Q Consensus 130 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 197 (305)
.-.+|+++.+ -.+.+.|+-.+.+|.+.|-.|....-..++.+.-..|. ...|...++.....|.+-..
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 110 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGL 110 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 4456676655 47899999999999999988888777788887766664 34566667777777754433
No 289
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=55.31 E-value=47 Score=22.69 Aligned_cols=61 Identities=5% Similarity=0.055 Sum_probs=38.4
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcCcC-ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263 152 VMQISGVEPDYLTIISVLNVCANVR-TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213 (305)
Q Consensus 152 ~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (305)
.|++.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|..--++.+.+.|-+
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 356677776543 234444555555 5667888888888777666766666666777666654
No 290
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=55.23 E-value=1.2e+02 Score=27.19 Aligned_cols=209 Identities=12% Similarity=-0.051 Sum_probs=126.6
Q ss_pred chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263 44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV 123 (305)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 123 (305)
|...-.....+....|+.++|......+-..|- ........++..+.+.+..+....-.-+......|+...|..+...
T Consensus 101 ~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~ 179 (618)
T 1qsa_A 101 TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ 179 (618)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 555555667788888998888888888777652 3345667788887777776665555566777777888888877777
Q ss_pred cCc---------------cccHH-----------------HHHHHHHcCCChHHHHHHHHHHHHcC-CCCCH--HHHHHH
Q 036263 124 MRG---------------CDFWT-----------------ALLNGFVKRDYFEEALEYFRVMQISG-VEPDY--LTIISV 168 (305)
Q Consensus 124 ~~~---------------~~~~~-----------------~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~--~t~~~l 168 (305)
++. ..... .-+.-+.+ .+.+.|..+|......+ +.+.. .....+
T Consensus 180 l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~i 258 (618)
T 1qsa_A 180 MPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIV 258 (618)
T ss_dssp CCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHH
Confidence 632 00011 11222222 25678888887775443 22221 223344
Q ss_pred HHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCc---hhhHHHHHHHHHhcCChH
Q 036263 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT---LVSWNSIIVGFAVNGFVG 245 (305)
Q Consensus 169 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~ 245 (305)
.......+...++...+....... .+.....-.+....+.|+++.|.+.|+.|.... ....-=+.+++...|+.+
T Consensus 259 a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~ 336 (618)
T 1qsa_A 259 AWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREA 336 (618)
T ss_dssp HHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHH
Confidence 444555553445555555544332 333334444455567799999999999987531 222223445677789999
Q ss_pred HHHHHHHHHHH
Q 036263 246 EALEYFNLMQK 256 (305)
Q Consensus 246 ~a~~~~~~m~~ 256 (305)
+|..+|+.+.+
T Consensus 337 ~a~~~~~~~a~ 347 (618)
T 1qsa_A 337 EAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99888887653
No 291
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=54.95 E-value=51 Score=23.01 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=39.2
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213 (305)
Q Consensus 151 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (305)
+.+++.|++++. --..++..+...+..-.|.++++.+.+.+...+..|..--++.+.+.|-+
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 445667776643 23344555555566777888888888777666766666667777777654
No 292
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=53.56 E-value=84 Score=25.87 Aligned_cols=25 Identities=12% Similarity=-0.069 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHH
Q 036263 164 TIISVLNVCANVRTLGIGLWMHRYV 188 (305)
Q Consensus 164 t~~~ll~~~~~~~~~~~a~~~~~~~ 188 (305)
....++.-|...|+.++|.+.++++
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 3455566666666666666666655
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.51 E-value=56 Score=23.05 Aligned_cols=50 Identities=8% Similarity=0.088 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCC
Q 036263 247 ALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSP 297 (305)
Q Consensus 247 a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p 297 (305)
+.++|..|...|+.- -+..|......+...|++++|.++|+.=. ..+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi-~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI-QNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCcc
Confidence 555555555554332 22344444444555555555555555444 334333
No 294
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=53.14 E-value=30 Score=26.97 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCc
Q 036263 101 STALLDMYAKFGRMDLATVVFDVMRG 126 (305)
Q Consensus 101 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 126 (305)
|..++.-|++..+++...+.+..-+.
T Consensus 42 ~e~~lk~Fa~i~~y~dS~~FL~~hp~ 67 (265)
T 1us7_B 42 YEKQIKHFGMLRRWDDSQKYLSDNVH 67 (265)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHTTGG
T ss_pred HHHHHHHHHccCCHHHHHHHHHhCCe
Confidence 56677778888888888888877655
No 295
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=52.97 E-value=55 Score=22.83 Aligned_cols=63 Identities=6% Similarity=0.072 Sum_probs=44.2
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCcC-ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChH
Q 036263 151 RVMQISGVEPDYLTIISVLNVCANVR-TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214 (305)
Q Consensus 151 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 214 (305)
+.|++.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|..--++.+.+.|-+.
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4467778777653 334555555565 67789999999988876777777777778888877653
No 296
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=52.24 E-value=57 Score=22.76 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=16.6
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 186 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
+.+.+.|+.++.. -..++..+...+..-.|.++++.+.
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~ 53 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIR 53 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHH
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 3344555444332 2233444444444455555555554
No 297
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=51.95 E-value=54 Score=26.49 Aligned_cols=213 Identities=9% Similarity=-0.048 Sum_probs=109.5
Q ss_pred CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263 43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD 122 (305)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 122 (305)
.|..-++.|.. .+..|+.+-+..++ +.|..++.... .- .+.+...+..|+.+-+..+++
T Consensus 16 ~d~~g~t~L~~-Aa~~g~~~~v~~Ll----~~g~~~~~~d~---------------~g-~t~L~~A~~~g~~~~v~~Ll~ 74 (364)
T 3ljn_A 16 SDDENMEKIHV-AARKGQTDEVRRLI----ETGVSPTIQNR---------------FG-CTALHLACKFGCVDTAKYLAS 74 (364)
T ss_dssp CCHHHHHHHHH-HHHHTCHHHHHHHH----HTTCCTTCCCT---------------TC-CCHHHHHHHHCCHHHHHHHHH
T ss_pred cCCCCCCHHHH-HHHcCCHHHHHHHH----HcCCCccccCC---------------CC-CcHHHHHHHcCCHHHHHHHHH
Confidence 35555555544 44567766555444 45655543211 00 112334566788888777777
Q ss_pred hcCcc---ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH--------------------HHHHHHHHHhcCcC--C
Q 036263 123 VMRGC---DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY--------------------LTIISVLNVCANVR--T 177 (305)
Q Consensus 123 ~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--------------------~t~~~ll~~~~~~~--~ 177 (305)
.-... .-++ .+...+..|+.+-+..+++.....|..|+. ...+.|..+ +..| +
T Consensus 75 ~g~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A-~~~g~~~ 152 (364)
T 3ljn_A 75 VGEVHSLWHGQK-PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWC-VGLGPEY 152 (364)
T ss_dssp HCCCCCCBTTBC-HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHH-HHSCGGG
T ss_pred CCCCccccCCCC-HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHH-HHcCCch
Confidence 65431 2233 444455678888877777765555555443 113334443 3444 4
Q ss_pred hhHHHHHHHHHhhcCCCCChhH--HHHHHHHHHhcCChHHHHHHHHhccc--------CchhhHHHHHHHHHhcCChHHH
Q 036263 178 LGIGLWMHRYVPKQDFKDNVRV--CNTLMDVYSRFGCIEFARQVFQRMHK--------RTLVSWNSIIVGFAVNGFVGEA 247 (305)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a 247 (305)
.+.+..+ .+.|..++... -.+.+...+..|+.+-+..+++.-.. .+..-++.| ...+..|+.+-
T Consensus 153 ~~~v~~L----l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~- 226 (364)
T 3ljn_A 153 LEMIKIL----VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDV- 226 (364)
T ss_dssp HHHHHHH----HHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHH-
T ss_pred HHHHHHH----HHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHH-
Confidence 5444444 44454443221 12334445677888888888876433 222223333 33456676654
Q ss_pred HHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHH
Q 036263 248 LEYFNLMQKGVFKTDEV---SFTGALTACSHAGLIEDGLQYFDI 288 (305)
Q Consensus 248 ~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~ 288 (305)
++.+.+.|..++.. -.+.| ...++.|..+-+..+++.
T Consensus 227 ---v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 227 ---AMRFVEMGIDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp ---HHHHHTTTCCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred ---HHHHHHcCCCCCCCCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 34444556555432 22233 333455777777666664
No 298
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=51.17 E-value=31 Score=25.68 Aligned_cols=182 Identities=12% Similarity=0.053 Sum_probs=92.6
Q ss_pred HHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHhc
Q 036263 104 LLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT--IISVLNVCA 173 (305)
Q Consensus 104 ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~ 173 (305)
.+...++.|+.+.+..+++.+.+ ...-.+.+...+..|+.+- ++.+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHH
Confidence 45566778999988888874321 1112234455556677654 444455666554321 123344445
Q ss_pred CcCChhHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhcccCch---hhHHHHHHHHHhcCChHHH
Q 036263 174 NVRTLGIGLWMHRYVPKQDFKDN---VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL---VSWNSIIVGFAVNGFVGEA 247 (305)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a 247 (305)
..|+.+.+..+++.....++.++ ..-.+ .+...+..|+.+-+..+++.-..++. ..-...+...+..|+.+-+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v 166 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCc-HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHH
Confidence 66777766666655432221221 12222 33444566888777777776543322 1122334445567776544
Q ss_pred HHHHHHHHHCCCCCCHHH--HHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263 248 LEYFNLMQKGVFKTDEVS--FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 248 ~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
+.+.+.|..++... -...+...+..|+.+-+ +.+. +.|..|+.
T Consensus 167 ----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll-~~ga~~~~ 211 (241)
T 1k1a_A 167 ----QLLLQHGANVNAQMYSGSSALHSASGRGLLPLV----RTLV-RSGADSSL 211 (241)
T ss_dssp ----HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHH----HHHH-HTTCCTTC
T ss_pred ----HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHH----HHHH-hcCCCCCC
Confidence 44445566554321 11233444455666544 4444 45666653
No 299
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=51.01 E-value=46 Score=23.69 Aligned_cols=59 Identities=5% Similarity=0.055 Sum_probs=33.4
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC------chhhHHHHHHHHHhcCChH
Q 036263 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR------TLVSWNSIIVGFAVNGFVG 245 (305)
Q Consensus 186 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~ 245 (305)
+.+.+.|+.++.. -..++..+...+..-.|.++++.+.+. +..|.-.-+..+...|-+.
T Consensus 22 ~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 22 KILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455667766543 345566666666666777777776532 3334444445555555444
No 300
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=50.52 E-value=1e+02 Score=25.27 Aligned_cols=192 Identities=9% Similarity=0.024 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCcccc----HHHHHHHHHcCCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 036263 101 STALLDMYAKFGRMDLATVVFDVMRGCDF----WTALLNGFVKRDY--FEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174 (305)
Q Consensus 101 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 174 (305)
...++.-|...++.++|...++.+..... -..+|......++ -+.+-.++..+.. ++-+.......+...+..
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~lle~ 135 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLLKD 135 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 47788889999999999999999865222 2223332222222 3456667777763 565555555555544444
Q ss_pred cCCh----hHHHHHHHH----HhhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHh------ccc--------Cc---
Q 036263 175 VRTL----GIGLWMHRY----VPKQDFKDNVRVCNTLMDVYSRFG--CIEFARQVFQR------MHK--------RT--- 227 (305)
Q Consensus 175 ~~~~----~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~------~~~--------~~--- 227 (305)
..+. ..|..++.. ++..++-|-..........-+..| -++.|..++.. +.+ ..
T Consensus 136 ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~vee 215 (358)
T 3eiq_C 136 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNH 215 (358)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSCHHH
T ss_pred hhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCccHHH
Confidence 4432 234433333 333333221111110000000000 01222222210 000 01
Q ss_pred -hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHhCC
Q 036263 228 -LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG--LIEDGLQYFDIMKKIYRV 295 (305)
Q Consensus 228 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~ 295 (305)
....+.++.-|...|+.++|...++++..-.+. .......+..++-+.+ ..+....++..+. ..|+
T Consensus 216 lkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~-~~gl 284 (358)
T 3eiq_C 216 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLW-KSST 284 (358)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHH-HCCC
Confidence 124577888899999999999999988642221 1234445555666543 3456777777777 4443
No 301
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=50.36 E-value=32 Score=23.36 Aligned_cols=40 Identities=8% Similarity=-0.048 Sum_probs=17.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263 236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275 (305)
Q Consensus 236 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 275 (305)
..+...++.-.|.++++.+.+.+...+..|.--.++.+.+
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e 57 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMAS 57 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 3333344444555555555544433444443333444433
No 302
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.89 E-value=61 Score=23.00 Aligned_cols=70 Identities=10% Similarity=0.104 Sum_probs=49.2
Q ss_pred HHHHHHHH-HHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc--CCCCChhHHHHHHHHHHhcCChH
Q 036263 144 EEALEYFR-VMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ--DFKDNVRVCNTLMDVYSRFGCIE 214 (305)
Q Consensus 144 ~~a~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~ 214 (305)
+.+++-+. .+++.|++++. --..++..+...+..-.|.++++.+.+. +...+..|..--++.+.+.|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44444443 45677888764 3456667777777888899999999887 66677777666678888888643
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.52 E-value=48 Score=25.14 Aligned_cols=56 Identities=7% Similarity=0.154 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHH
Q 036263 179 GIGLWMHRYVPKQDFKDN-VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234 (305)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 234 (305)
+....+|..|...|+... +..|......+...|++.+|.++|+.-.+....-...|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 187 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRF 187 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 456677777777776554 45667777777778888888888777664443333333
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.48 E-value=1.8e+02 Score=27.62 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=15.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 265 SFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
-|..++.-|.+.+.++.+.++-+...
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI 924 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLAD 924 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 35566666666666666665555444
No 305
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.15 E-value=1.1e+02 Score=25.14 Aligned_cols=92 Identities=12% Similarity=0.100 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCc---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263 199 VCNTLMDVYSRFGCIEFARQVFQRMHKRT---LVSWNSIIVGFAVNGF--VGEALEYFNLMQKGVFKTDEVSFTGALTAC 273 (305)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 273 (305)
....++.-|...|+.++|.+.++++..|. ......+..++=+.++ .+...+++..+.+.|+-+.......+.+.+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 46888999999999999999999999763 2344445555544333 456888999999888766666555555554
Q ss_pred hccCc----HHHHHHHHHHHH
Q 036263 274 SHAGL----IEDGLQYFDIMK 290 (305)
Q Consensus 274 ~~~g~----~~~a~~~~~~m~ 290 (305)
....+ ...|..++..+.
T Consensus 299 ~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 299 NEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHHHHHHCTTHHHHHHHHH
T ss_pred HhccHhhcccccHHHHHHHHH
Confidence 44332 234555555443
No 306
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=48.64 E-value=33 Score=19.74 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHhh
Q 036263 61 ILEAALEFTRMRLYGTNPSHITFVTLLSGC 90 (305)
Q Consensus 61 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 90 (305)
.++|.+.|.+|++..-.++..||...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 468899998888765455567888887776
No 307
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=48.47 E-value=43 Score=20.27 Aligned_cols=62 Identities=6% Similarity=0.087 Sum_probs=41.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCcC-ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263 151 RVMQISGVEPDYLTIISVLNVCANVR-TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213 (305)
Q Consensus 151 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (305)
+.|++.|+..+..- ..++..+...+ ..-.+.++.+.+.+.+...+..|..-.++.+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34667787776544 45556666554 5667788888887776666777777777777776653
No 308
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.07 E-value=77 Score=23.05 Aligned_cols=109 Identities=7% Similarity=-0.102 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHH
Q 036263 160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFA 239 (305)
Q Consensus 160 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 239 (305)
++..+-...+.++.+.+..+....+.+ +.+ .++..+-...+.++.+.|..+....+.+-+.+++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHH-HHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444445555555554433333322 222 3455555666666666666544444444444556555556666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036263 240 VNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA 276 (305)
Q Consensus 240 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 276 (305)
..+. +.+...+..+.+. ++...-...+.++.+.
T Consensus 169 ~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred HhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 6665 3444555554442 3444444444554443
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=47.60 E-value=48 Score=23.02 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=38.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213 (305)
Q Consensus 151 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (305)
+.+++.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|..--++.+.+.|-+
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3456677776643 223333344444 567888888888777666766666666777776654
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.09 E-value=73 Score=22.47 Aligned_cols=44 Identities=11% Similarity=0.030 Sum_probs=20.4
Q ss_pred HHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 181 GLWMHRYVPKQDFKDN-VRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 181 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
...+|..|...|+... +..|......+...|++.+|.++|+.-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555544444332 3334444444444555555555554444
No 311
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.87 E-value=33 Score=25.41 Aligned_cols=13 Identities=8% Similarity=0.363 Sum_probs=5.7
Q ss_pred hcCChHHHHHHHH
Q 036263 110 KFGRMDLATVVFD 122 (305)
Q Consensus 110 ~~g~~~~a~~~~~ 122 (305)
+.|+.+....+++
T Consensus 18 ~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 18 QYGIYERCRELVE 30 (240)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHH
Confidence 3444444444443
No 312
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=46.43 E-value=29 Score=23.97 Aligned_cols=22 Identities=5% Similarity=0.087 Sum_probs=10.7
Q ss_pred HHHHHHhcCChHHHHHHHHhcc
Q 036263 203 LMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~ 224 (305)
++..+...+..-.|.++++.+.
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~ 40 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLK 40 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHH
Confidence 3444444444445555555554
No 313
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=46.34 E-value=13 Score=21.48 Aligned_cols=23 Identities=9% Similarity=-0.064 Sum_probs=17.0
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCH
Q 036263 241 NGFVGEALEYFNLMQKGV-FKTDE 263 (305)
Q Consensus 241 ~g~~~~a~~~~~~m~~~g-~~p~~ 263 (305)
.-|++.|...|.++...| ++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457888999999887766 55543
No 314
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=44.26 E-value=87 Score=22.54 Aligned_cols=93 Identities=8% Similarity=-0.079 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHH
Q 036263 159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGF 238 (305)
Q Consensus 159 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 238 (305)
.++..+-...+.++.+.+..+....+.+.+ + .++..+-...+.++.+.+..+....+.+.+.+++...-...+.++
T Consensus 87 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l-~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL 162 (201)
T 3ltj_A 87 DEDGWVRQSAAVALGQIGDERAVEPLIKAL-K---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL 162 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHH-c---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345555555566666666544333333322 2 345666666677777766654444444445556665556666666
Q ss_pred HhcCChHHHHHHHHHHHH
Q 036263 239 AVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 239 ~~~g~~~~a~~~~~~m~~ 256 (305)
...|+. ++...+..+.+
T Consensus 163 ~~~~~~-~~~~~L~~~l~ 179 (201)
T 3ltj_A 163 GEIGGE-RVRAAMEKLAE 179 (201)
T ss_dssp HHHCSH-HHHHHHHHHHH
T ss_pred HHhCch-hHHHHHHHHHh
Confidence 666553 34444444443
No 315
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=43.87 E-value=45 Score=22.59 Aligned_cols=45 Identities=16% Similarity=-0.019 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcC
Q 036263 48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD 92 (305)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 92 (305)
--.++..+...+..-.|.++++.+++.+...+..|.--.|..+..
T Consensus 13 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e 57 (131)
T 2o03_A 13 RAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMAS 57 (131)
T ss_dssp HHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 346778888788888999999999988766676666544544433
No 316
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=43.17 E-value=49 Score=21.11 Aligned_cols=34 Identities=18% Similarity=0.059 Sum_probs=17.3
Q ss_pred ChHHHHHHHHhcccCchhhHHHHHHHHHhcCChH
Q 036263 212 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 245 (305)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 245 (305)
..+.|.++++.+..+....|..++.++...|+.+
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 3455555555555555555555555554444433
No 317
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=42.96 E-value=1.3e+02 Score=24.37 Aligned_cols=42 Identities=7% Similarity=0.074 Sum_probs=28.5
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
++++.+.+.|+.|...++..++..+.+.=.++.+.++|+.+-
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l 271 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQ 271 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 455556666776666677777777766666777777777766
No 318
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=42.78 E-value=41 Score=23.02 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=31.2
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhccc----CchhhHHHHHHHHHhcCChH
Q 036263 187 YVPKQDFKDNVRVCNTLMDVYSRFG-CIEFARQVFQRMHK----RTLVSWNSIIVGFAVNGFVG 245 (305)
Q Consensus 187 ~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~ 245 (305)
.+.+.|+.++.. -..++..+...+ ..-.|.++++.+.+ .+..|.-.-+..+...|-+.
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 355667666544 234455555555 56667777777753 23444444455555555443
No 319
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=42.31 E-value=62 Score=20.32 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=17.0
Q ss_pred CChHHHHHHHHhcccCchhhHHHHHHHHHhcCC
Q 036263 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 243 (305)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 243 (305)
...++|.++++.+..+....|..++.++...+.
T Consensus 50 t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence 344555555555555555555555555554443
No 320
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=41.40 E-value=46 Score=25.22 Aligned_cols=31 Identities=3% Similarity=-0.214 Sum_probs=23.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHh
Q 036263 51 SISRHCRSGCILEAALEFTRMRLYGTNPSHI 81 (305)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 81 (305)
.+...++.|+.+....+++.+.+.|..++..
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~ 38 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE 38 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchh
Confidence 3455667899999888998888877666643
No 321
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=40.26 E-value=1.4e+02 Score=23.89 Aligned_cols=135 Identities=8% Similarity=0.114 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHc-C----CCCCHHHHHH---HHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHH
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQIS-G----VEPDYLTIIS---VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN 201 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~-g----~~p~~~t~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 201 (305)
++.++..+.-.-.-++|..+|..+... + ..|+...... .+..+.+..+ -++++.+.+.|+.|...++.
T Consensus 152 m~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~ 227 (331)
T 3qye_A 152 LSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAP 227 (331)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHH
Confidence 444444444444566788887776543 1 2343222211 1222222222 25677777888888888888
Q ss_pred HHHHHHHhcCChHHHHHHHHhccc--CchhhHHH--HHHH----HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036263 202 TLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNS--IIVG----FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT 271 (305)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~--li~~----~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 271 (305)
.++..+.+.=.++.+.++|+..-. +....+-+ ++.. .....++++...+++..... .+......++.
T Consensus 228 W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~---~~~~di~~li~ 302 (331)
T 3qye_A 228 WFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN---LGLVQMEKTIN 302 (331)
T ss_dssp HHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTC---CCHHHHHHHHH
T ss_pred HHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC---CCHHHHHHHHH
Confidence 888888877778888888887763 22221111 1111 22344677777776663321 23344445554
No 322
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=39.93 E-value=68 Score=22.19 Aligned_cols=56 Identities=4% Similarity=0.106 Sum_probs=26.7
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC----chhhHHHHHHHHHhcCC
Q 036263 186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR----TLVSWNSIIVGFAVNGF 243 (305)
Q Consensus 186 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~ 243 (305)
+.+.+.|+.++.. -..++..+...+ .-.|.++++.+.+. +..|.-.-+..+...|-
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3455566665543 223334444444 45666666666531 33333333444444443
No 323
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=38.11 E-value=62 Score=20.83 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036263 245 GEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277 (305)
Q Consensus 245 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 277 (305)
-.|.++.++...-|+.|+..+...++.-|...+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 345666677777777777777777777666544
No 324
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=37.12 E-value=70 Score=21.94 Aligned_cols=59 Identities=7% Similarity=-0.013 Sum_probs=36.7
Q ss_pred HHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263 154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213 (305)
Q Consensus 154 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (305)
++.|++++. --..++..+...+..-.|.++++.+.+.+...+..|..--++.+.+.|-+
T Consensus 6 r~~g~r~T~-qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 6 PPVKGRATR-QRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp ----CHHHH-HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred CCCCCccCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344444322 23455666666666777888888888777667776666667777777754
No 325
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.04 E-value=55 Score=24.26 Aligned_cols=169 Identities=11% Similarity=0.015 Sum_probs=82.4
Q ss_pred HHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHhcCcCC
Q 036263 107 MYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISG-VEP---DYLTIISVLNVCANVRT 177 (305)
Q Consensus 107 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p---~~~t~~~ll~~~~~~~~ 177 (305)
..++.|+.+-+..+++.-.. .... +.+...+..|+.+-+..+ .+.| ..+ +....+.+. ..+..|+
T Consensus 50 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~L----l~~~~~~~~~~~~~g~t~L~-~A~~~~~ 123 (237)
T 3b7b_A 50 EAAENNHLEAVKYLIKAGALVDPKDAEGS-TCLHLAAKKGHYEVVQYL----LSNGQMDVNCQDDGGWTPMI-WATEYKH 123 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCCCCCTTSC-CHHHHHHHTTCHHHHHHH----HTTTCCCTTCCCTTSCCHHH-HHHHTTC
T ss_pred HHHHhCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHH----HhCCCCCcccCCCCCCCHHH-HHHHcCC
Confidence 34566888777777665322 1112 234444556666544433 3333 222 122222232 3334455
Q ss_pred hhHHHHHHHHHhhcCCCCChh--HHHHHHHHHHhcCChHHHHHHHHhcccCc---hhhHHHHHHHHHhcCChHHHHHHHH
Q 036263 178 LGIGLWMHRYVPKQDFKDNVR--VCNTLMDVYSRFGCIEFARQVFQRMHKRT---LVSWNSIIVGFAVNGFVGEALEYFN 252 (305)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~ 252 (305)
.+. ++.+.+.|..++.. .-.+.+...+..|+.+-+..+++.-..++ ..-.+ .+...++.|+.+-+ +
T Consensus 124 ~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v----~ 194 (237)
T 3b7b_A 124 VDL----VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS-PLHIAARENRYDCV----V 194 (237)
T ss_dssp HHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCC-HHHHHHHTTCHHHH----H
T ss_pred HHH----HHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHhCCHhHH----H
Confidence 544 44444555444321 11223344456677776666665543322 11222 23444566766544 3
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 253 LMQKGVFKTDEV--SFTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 253 ~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.+.+.|..++.. .-...+......|+.+.+.++.+.+.
T Consensus 195 ~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 195 LFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp HHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455544321 11233455567788888888888776
No 326
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.97 E-value=50 Score=23.70 Aligned_cols=159 Identities=9% Similarity=-0.009 Sum_probs=74.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhH--HHHHHHHHHhcC
Q 036263 134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV--CNTLMDVYSRFG 211 (305)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g 211 (305)
+...+..|+.+.+..++..-...--..+....+.|.. .+..|+.+.+ +.+.+.|..++... -.+.+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDIEIA----KALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 3445567888877776643210000112222333333 3455665544 44445555443221 122344456678
Q ss_pred ChHHHHHHHHhcc-c---CchhhHHHHHHHHHhcCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036263 212 CIEFARQVFQRMH-K---RTLVSWNSIIVGFAVNGFVGEALEYFNLM-QKGVFKTDEVSFTGALTACSHAGLIEDGLQYF 286 (305)
Q Consensus 212 ~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 286 (305)
+.+-+..+++.-. . .+....+. +...+..|+.+-+..+++.- ..-. ..|..-.+.+..+.........-.++.
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 8888888875543 1 22222222 33445667776555555442 1111 112222334444443322233335566
Q ss_pred HHHHHHhCCCCCcc
Q 036263 287 DIMKKIYRVSPQIE 300 (305)
Q Consensus 287 ~~m~~~~~~~p~~~ 300 (305)
+.+. +.|..|+..
T Consensus 162 ~~Ll-~~ga~~~~~ 174 (201)
T 3hra_A 162 KLLM-ENGADQSIK 174 (201)
T ss_dssp HHHH-HTTCCTTCC
T ss_pred HHHH-HCCCCCCcc
Confidence 6666 667776643
No 327
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=36.55 E-value=82 Score=20.05 Aligned_cols=64 Identities=6% Similarity=-0.057 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 036263 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQ 218 (305)
Q Consensus 149 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 218 (305)
++..+.+.|+- +..-...+-. .......+.|.++++.+.++| ...|..++.++...|...-|..
T Consensus 26 vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 26 LWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp THHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHHH
Confidence 55555666543 2222322222 112246778888888887776 4567788888877676555443
No 328
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.92 E-value=1.8e+02 Score=27.53 Aligned_cols=126 Identities=7% Similarity=-0.104 Sum_probs=65.9
Q ss_pred HHHHHHhcCChHHHHHHHHhcCccc-cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHH
Q 036263 104 LLDMYAKFGRMDLATVVFDVMRGCD-FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL 182 (305)
Q Consensus 104 ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 182 (305)
++..+...|..+-|.++....+... .--.+..+|...|++++|.+.|++.- .|+..+..... ......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~----------~~~~~~ 884 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------VLREFQ 884 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCG----------GGHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCccccc----------chhhhh
Confidence 5555666677776666666655421 11234456667777777777776532 23322110000 000111
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc----Cc----hhhHHHHHHHHHhcC
Q 036263 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----RT----LVSWNSIIVGFAVNG 242 (305)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~----~~~~~~li~~~~~~g 242 (305)
.++.... .+ .....=|..++..+-+.+.++-+.++-+...+ .| ...|+.++++.+..|
T Consensus 885 ~ll~~~e-~~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 885 EIAEKYH-HQ-NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHTT-TC-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hccCccc-cc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1111110 00 11123567888888888888887776665542 12 246788888877655
No 329
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.78 E-value=1e+02 Score=23.86 Aligned_cols=182 Identities=9% Similarity=-0.004 Sum_probs=91.3
Q ss_pred HHHHHHhcCChHHHHHHHHhcCcccc--HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhcCcCCh
Q 036263 104 LLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY---LTIISVLNVCANVRTL 178 (305)
Q Consensus 104 ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~ 178 (305)
.+...++.|+.+-+..+++.-.+... -.+.+...+..|+.+-+..+ .+.|..++. ...+.+.. .+..|+.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L~~-A~~~g~~ 108 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTALYY-AVDSGNM 108 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHHHH-HHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHHHH-HHHcCCH
Confidence 34556667888888888776433111 12344455566766544433 445655442 22333333 3455666
Q ss_pred hHHHHHHHHHhhcCCCCChh---HHHHHHHHHHhcCChHHHHHHHHhcccC-chhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263 179 GIGLWMHRYVPKQDFKDNVR---VCNTLMDVYSRFGCIEFARQVFQRMHKR-TLVSWNSIIVGFAVNGFVGEALEYFNLM 254 (305)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 254 (305)
+-+..+++ .|..++.. -+.+.+...+..|+.+-+..+++.-... +...-.+.+...+..|+.+-+..+++.-
T Consensus 109 ~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 109 QTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp HHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcC
Confidence 55544444 34433322 2234455556778877777776665433 2212234445556778877666666553
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCcc
Q 036263 255 QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIE 300 (305)
Q Consensus 255 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 300 (305)
..-... |..-....+...++.|+.+ +.+.+. ..|..|+..
T Consensus 185 ad~n~~-~~~g~t~~L~~A~~~~~~~----~v~~Ll-~~gad~~~~ 224 (285)
T 3kea_A 185 TSTNTN-NSLLFIPDIKLAIDNKDIE----MLQALF-KYDINIYSA 224 (285)
T ss_dssp HHTCTT-CCCBCCTTHHHHHHHTCHH----HHHHHT-TSCBCSTTT
T ss_pred CCCCcc-cCCCCChHHHHHHHcCCHH----HHHHHH-HcCCCCCCC
Confidence 332221 1111222233333455543 444445 567776654
No 330
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.71 E-value=75 Score=23.35 Aligned_cols=177 Identities=10% Similarity=0.023 Sum_probs=80.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----
Q 036263 52 ISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG----- 126 (305)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----- 126 (305)
+...++.|+++....+++.-...--.++..-. +.+...+..|+.+-+..+++.-.+
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-------------------t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 70 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSR-------------------TALHWACSAGHTEIVEFLLQLGVPVNDKD 70 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSC-------------------CHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCC-------------------CHHHHHHHcCcHHHHHHHHHhCCCCCCcC
Confidence 56667788888887777653221111111111 122234566777777766664322
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhH--HH
Q 036263 127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY---LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV--CN 201 (305)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~ 201 (305)
..-++.| ...+..|+.+- ++.+.+.|..++. ...+.+ ...+..|+.+.+.. +.+.|..++... -.
T Consensus 71 ~~g~t~L-~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~----Ll~~g~~~~~~~~~g~ 140 (231)
T 3aji_A 71 DAGWSPL-HIAASAGXDEI----VKALLVKGAHVNAVNQNGCTPL-HYAASKNRHEIAVM----LLEGGANPDAKDHYDA 140 (231)
T ss_dssp TTSCCHH-HHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHH----HHHTTCCTTCCCTTSC
T ss_pred CCCCCHH-HHHHHcCHHHH----HHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHH----HHHcCCCCCCcCCCCC
Confidence 1123333 33344455543 3344445544432 122223 23334455554433 344444433211 12
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036263 202 TLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD 262 (305)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 262 (305)
+.+...+..|+.+-+..+++.-..+ +..-.+. +...+..|+.+- ++.+.+.|..|+
T Consensus 141 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~ga~~~ 199 (231)
T 3aji_A 141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTP-LHLACDEERVEE----AKFLVTQGASIY 199 (231)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHH----HHHHHHTTCCSC
T ss_pred cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCH-HHHHHHCCCHHH----HHHHHHCCCCCC
Confidence 2344445667777666666543322 2222222 333455666543 334444555443
No 331
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=35.31 E-value=1.2e+02 Score=21.94 Aligned_cols=178 Identities=11% Similarity=0.038 Sum_probs=82.7
Q ss_pred HHHHHhcCChHHHHHHHHhcCccc----cHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHhcCcC
Q 036263 105 LDMYAKFGRMDLATVVFDVMRGCD----FWTALLNGFVKRDYFEEALEYFRVMQISGV-EP---DYLTIISVLNVCANVR 176 (305)
Q Consensus 105 l~~~~~~g~~~~a~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p---~~~t~~~ll~~~~~~~ 176 (305)
+...++.|+.+.+..+++.-.+.. .-.+.+...+..|+.+-+..+++ .+. .+ +....+.+.. .+..|
T Consensus 29 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~-A~~~~ 103 (223)
T 2f8y_A 29 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR----NRATDLDARMHDGTTPLIL-AARLA 103 (223)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----BTTSCTTCCCTTCCCHHHH-HHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCcHHHH-HHHhC
Confidence 344567788888877777643311 11234445556677665544443 321 11 2222222322 23445
Q ss_pred ChhHHHHHHHHHhhcCCCCChhH--HHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHH
Q 036263 177 TLGIGLWMHRYVPKQDFKDNVRV--CNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYF 251 (305)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~ 251 (305)
+.+. .+.+.+.|..++... -.+.+...+..|+.+-+..+++.-..+ +..-.+.+ ...+..|+.+-+.
T Consensus 104 ~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~--- 175 (223)
T 2f8y_A 104 VEGM----LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL-FLAAREGSYETAK--- 175 (223)
T ss_dssp CHHH----HHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHTCHHHHH---
T ss_pred cHHH----HHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHH-HHHHHcCCHHHHH---
Confidence 5544 344444554443221 123344456678887777777763332 22222333 3335566665443
Q ss_pred HHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCcccc
Q 036263 252 NLMQKGVFKTDEV---SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH 302 (305)
Q Consensus 252 ~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 302 (305)
.+.+.|..|+.. -. ..+....+.|..+ +.+.+. +.|..++...+
T Consensus 176 -~Ll~~ga~~~~~~~~g~-t~l~~A~~~~~~~----i~~~L~-~~g~~~~~~~~ 222 (223)
T 2f8y_A 176 -VLLDHFANRDITDHMDR-LPRDIAQERMHHD----IVRLLD-EYNLVRSPQLH 222 (223)
T ss_dssp -HHHHTTCCTTCCCTTCC-CHHHHHHHTTCHH----HHHHHH-HTTCSSCC---
T ss_pred -HHHHcCCCCccccccCC-CHHHHHHHhcchH----HHHHHH-HcCCCcccccC
Confidence 444445444321 11 1233334455544 344444 66766665443
No 332
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=35.09 E-value=1.1e+02 Score=21.04 Aligned_cols=68 Identities=7% Similarity=-0.024 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHhcCcCC---hhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263 158 VEPDYLTIISVLNVCANVRT---LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225 (305)
Q Consensus 158 ~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (305)
-.|+..|--....++.+..+ ..++..+++.+.+.+..-.....--+.-++.+.|++++|.+..+.+.+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555554444445555444 446777777777665112344555666677888888888888877763
No 333
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=34.83 E-value=66 Score=18.43 Aligned_cols=21 Identities=14% Similarity=0.033 Sum_probs=9.2
Q ss_pred cCChHHHHHHHHHHHHCCCCC
Q 036263 241 NGFVGEALEYFNLMQKGVFKT 261 (305)
Q Consensus 241 ~g~~~~a~~~~~~m~~~g~~p 261 (305)
.|+++.|+..+-.|...+..|
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSC
T ss_pred CCCHHHHHHHHHcCcCCCCCC
Confidence 344444444444444443333
No 334
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=34.72 E-value=1.1e+02 Score=24.14 Aligned_cols=105 Identities=9% Similarity=-0.012 Sum_probs=56.6
Q ss_pred HHHHHHHhhcCCCCChhH--HHHHHHHHHhcCChHHHHHHHHhcc----cCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036263 182 LWMHRYVPKQDFKDNVRV--CNTLMDVYSRFGCIEFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ 255 (305)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 255 (305)
..+.+.+.+.|..++... -.+.+...+..|..+.+..+++.-. ..|..-++.|..| +..|+.+ +.+.+.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll 293 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLC 293 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHH
Confidence 345555667776554321 1233445567888887777765422 1233333344333 5567655 445556
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263 256 KGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 256 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
+.|..+|..+ . +...++.|+.+ +.+.+. +.|..||.
T Consensus 294 ~~GAd~n~~~--~-L~~A~~~~~~~----iv~~Ll-~~GA~~d~ 329 (337)
T 4g8k_A 294 KRGASTDCGD--L-VMTARRNYDHS----LVKVLL-SHGAKEDF 329 (337)
T ss_dssp TTSCSSTTCC--H-HHHHHHTTCHH----HHHHHH-HTTCCC--
T ss_pred HCCCCCCCCC--H-HHHHHHcCCHH----HHHHHH-HCcCCCCC
Confidence 7787777654 3 33334556654 445555 67877775
No 335
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=34.46 E-value=64 Score=23.04 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHH
Q 036263 131 TALLNGFVKRDYFEEALEYFRVMQ 154 (305)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~ 154 (305)
..+|.-|...|+.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 456666767777777777777765
No 336
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=33.93 E-value=40 Score=25.60 Aligned_cols=92 Identities=8% Similarity=0.003 Sum_probs=52.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHhc--CcCChhHHHHHHHHHhhcC---------CC
Q 036263 133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYL-------TIISVLNVCA--NVRTLGIGLWMHRYVPKQD---------FK 194 (305)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~ 194 (305)
.+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+.+..+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 3445566788888777777777766655533 3345555442 5678877777776643311 11
Q ss_pred -CChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263 195 -DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225 (305)
Q Consensus 195 -~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (305)
.+..-.+. +...+..|+.+-+..+++.-..
T Consensus 88 ~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 88 DVYYRGQTA-LHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp CSSEESBCH-HHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccCCCCH-HHHHHHcCCHHHHHHHHhCCCC
Confidence 01122233 3444567888877777775443
No 337
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=33.80 E-value=1.2e+02 Score=21.13 Aligned_cols=67 Identities=7% Similarity=-0.015 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHhcCcCC---hhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263 159 EPDYLTIISVLNVCANVRT---LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK 225 (305)
Q Consensus 159 ~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (305)
.|+..+--....++.+..+ ..++..+++.+.+.+..-.....-.+.-++.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4666665555556666554 456888888888765222344455667788999999999999888873
No 338
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.69 E-value=1.6e+02 Score=22.46 Aligned_cols=90 Identities=11% Similarity=0.061 Sum_probs=46.2
Q ss_pred HHHHHhcCcCChhHHHHHHHHHhhc--CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhccc-CchhhHHHHHHHHH
Q 036263 167 SVLNVCANVRTLGIGLWMHRYVPKQ--DFKD----NVRVCNTLMDVYSRFGCIEFARQVFQRMHK-RTLVSWNSIIVGFA 239 (305)
Q Consensus 167 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~ 239 (305)
--++.+....++++|..++++..+. +++. ........++.-.....-.-+..+.+++.. .+...-...+..+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~~~~~~~~r~~v~~L~ 102 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEIVHLKSGTENMI 102 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3466777778888888777766432 2221 111222223322222223333344444422 23344555566677
Q ss_pred hcCChHHHHHHHHHHHH
Q 036263 240 VNGFVGEALEYFNLMQK 256 (305)
Q Consensus 240 ~~g~~~~a~~~~~~m~~ 256 (305)
+.|+-++|.++|=+.+.
T Consensus 103 rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 103 KLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHHH
Confidence 77777777777766554
No 339
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.23 E-value=84 Score=21.04 Aligned_cols=22 Identities=9% Similarity=-0.070 Sum_probs=12.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 036263 235 IVGFAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 235 i~~~~~~g~~~~a~~~~~~m~~ 256 (305)
+..+...++++.|.++.-.+..
T Consensus 68 l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 68 LVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3444556666666666655544
No 340
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=32.88 E-value=1.1e+02 Score=24.14 Aligned_cols=146 Identities=13% Similarity=0.070 Sum_probs=72.1
Q ss_pred HHHHHhcCChHHHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhcCc
Q 036263 105 LDMYAKFGRMDLATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY---LTIISVLNVCANV 175 (305)
Q Consensus 105 l~~~~~~g~~~~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~ 175 (305)
+...++.|+.+-+..++++... ..-.+.+........ ......+.+.+.+.|..++. .-.+. +...+..
T Consensus 172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~-~~~~~~i~~lLl~~gad~n~~d~~g~t~-L~~a~~~ 249 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD-DSDVEAITHLLLDHGADVNVRGERGKTP-LILAVEK 249 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSC-TTTHHHHHHHHHHTTCCTTCCCGGGCCH-HHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcC-cccHHHHHHHHHHCCCCCCCcCCCCCCH-HHHHHHh
Confidence 3445667888877777765311 122333433333222 22223344445667766542 22223 3344556
Q ss_pred CChhHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHH
Q 036263 176 RTLGIGLWMHRYVPKQDFKDN---VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 252 (305)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 252 (305)
|..+.+..+++. .|..++ ..-.+.| ...++.|+.+-+.-+++.=..++..+ .+...++.|+.+ +.+
T Consensus 250 ~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL-~~A~~~g~~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~ 318 (337)
T 4g8k_A 250 KHLGLVQRLLEQ---EHIEINDTDSDGKTAL-LLAVELKLKKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVK 318 (337)
T ss_dssp TCHHHHHHHHTS---TTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHH
T ss_pred hhhHHHHHHHHh---cCCcccCcCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHH
Confidence 666655554432 233332 2222333 33456788877776666544454433 334445667654 555
Q ss_pred HHHHCCCCCCH
Q 036263 253 LMQKGVFKTDE 263 (305)
Q Consensus 253 ~m~~~g~~p~~ 263 (305)
-+.+.|-.||.
T Consensus 319 ~Ll~~GA~~d~ 329 (337)
T 4g8k_A 319 VLLSHGAKEDF 329 (337)
T ss_dssp HHHHTTCCC--
T ss_pred HHHHCcCCCCC
Confidence 66777777764
No 341
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.81 E-value=51 Score=23.04 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=28.5
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhccc----CchhhHHHHHHHHHhcCCh
Q 036263 187 YVPKQDFKDNVRVCNTLMDVYSRFG-CIEFARQVFQRMHK----RTLVSWNSIIVGFAVNGFV 244 (305)
Q Consensus 187 ~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~ 244 (305)
.+.+.|+.++..= ..++..+...+ ..-.|.++++.+.+ .+..|.-..+..+...|-+
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3555666555432 23344444444 45566677666653 2334444444555555544
No 342
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.70 E-value=60 Score=19.60 Aligned_cols=35 Identities=11% Similarity=0.019 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036263 243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG 277 (305)
Q Consensus 243 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 277 (305)
..-.+.++++.+.+.+...+..|..-.+..+.+.|
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34455556666555544445555555555554444
No 343
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=32.51 E-value=1.1e+02 Score=23.04 Aligned_cols=16 Identities=13% Similarity=-0.049 Sum_probs=7.9
Q ss_pred HHhcCChHHHHHHHHH
Q 036263 238 FAVNGFVGEALEYFNL 253 (305)
Q Consensus 238 ~~~~g~~~~a~~~~~~ 253 (305)
|.+.|.+++|.+++++
T Consensus 124 Ciek~~f~kA~eiLkr 139 (235)
T 3bu8_A 124 CIKNKEFEKASKILKK 139 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHH
Confidence 4445555555555443
No 344
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=32.14 E-value=63 Score=22.28 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=7.8
Q ss_pred HHHhcCChHHHHHHHH
Q 036263 107 MYAKFGRMDLATVVFD 122 (305)
Q Consensus 107 ~~~~~g~~~~a~~~~~ 122 (305)
..++.|+.+....+++
T Consensus 14 ~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 14 EAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHTCHHHHHHHCC
T ss_pred HHHHhCCHHHHHHHHH
Confidence 3344455555555444
No 345
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.13 E-value=2e+02 Score=23.22 Aligned_cols=26 Identities=0% Similarity=0.003 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263 198 RVCNTLMDVYSRFGCIEFARQVFQRM 223 (305)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (305)
.....++..+.+....+.+.++|++-
T Consensus 142 ~fl~~vl~~l~~~~g~~~l~~~~~~s 167 (339)
T 1ug3_A 142 SLLLEILGLLCKSMGPKKVGTLWREA 167 (339)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHc
Confidence 44455555555555566666666543
No 346
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.90 E-value=2e+02 Score=23.02 Aligned_cols=188 Identities=9% Similarity=0.025 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCcccc----HHHHHHHHHcCCC--hHHHHHHHHHHHHcCCCCCHHH---HHHHHHH
Q 036263 101 STALLDMYAKFGRMDLATVVFDVMRGCDF----WTALLNGFVKRDY--FEEALEYFRVMQISGVEPDYLT---IISVLNV 171 (305)
Q Consensus 101 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~ 171 (305)
...++.-|...|+.++|...++++..... -..+|......++ -+.+-.++..+.. ++-+.... |..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 46788889999999999999999876332 2233333333332 3345567777764 44443333 4444444
Q ss_pred hcCcC-ChhHHHHHHHH----HhhcCCCCChhHHHHHHHHHHhcCC--hHHHHHHHHh------ccc----C----ch--
Q 036263 172 CANVR-TLGIGLWMHRY----VPKQDFKDNVRVCNTLMDVYSRFGC--IEFARQVFQR------MHK----R----TL-- 228 (305)
Q Consensus 172 ~~~~~-~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~------~~~----~----~~-- 228 (305)
+-... +...|..++.. ++..++-|-.......-..-...|. +..|..++.. ... + +.
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Confidence 43332 22333333333 3333332221111100000000000 1222222210 000 0 11
Q ss_pred --hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHH
Q 036263 229 --VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG--LIEDGLQYFDIMK 290 (305)
Q Consensus 229 --~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~ 290 (305)
.....++.-|...|+.++|...++++..-.+. .......+..++.+.+ ..+....++..+.
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~ 229 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLW 229 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Confidence 23567788888888999998888887632111 1234445555665543 2455667777776
No 347
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.89 E-value=1.5e+02 Score=21.25 Aligned_cols=137 Identities=9% Similarity=-0.022 Sum_probs=73.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCc--cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 036263 96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA 173 (305)
Q Consensus 96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 173 (305)
++..+-...+.++.+.|..+....+.+.+.+ ..+-...+.++.+.|..+.. ..+..+.. .++..+-...+.++.
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALG 132 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHc---CCCHHHHHHHHHHHH
Confidence 3444445555666666665444444444433 23344556666666665433 33333332 566666677777777
Q ss_pred CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHh
Q 036263 174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAV 240 (305)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 240 (305)
+.+..+.... +..+.+ .++..+-...+.++.+.|..+....+.+-+.+++...-...+.++.+
T Consensus 133 ~~~~~~~~~~-L~~~l~---d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 133 EIGDERAVEP-LIKALK---DEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp HHTCGGGHHH-HHHHTT---CSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHH-HHHHHc---CCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7776544433 333333 35677777888888888775433333333334554444444444433
No 348
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=30.54 E-value=30 Score=26.31 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=13.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCC
Q 036263 134 LNGFVKRDYFEEALEYFRVMQISGVE 159 (305)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~ 159 (305)
+...++.|+.+.+..+++.+.+.|..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 33344555565555555555555543
No 349
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.20 E-value=69 Score=21.46 Aligned_cols=42 Identities=7% Similarity=-0.167 Sum_probs=22.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK 190 (305)
Q Consensus 149 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 190 (305)
+|+.+.+..+.|+...--.-+..+...++++.|..++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445544444333444445666677777777666654
No 350
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.53 E-value=1.1e+02 Score=22.75 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=9.4
Q ss_pred cCChHHHHHHHHHHHHCCCCC
Q 036263 241 NGFVGEALEYFNLMQKGVFKT 261 (305)
Q Consensus 241 ~g~~~~a~~~~~~m~~~g~~p 261 (305)
..|.+.|+-++-+|.+.|-.|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 344444444444444444333
No 351
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=28.88 E-value=74 Score=23.97 Aligned_cols=19 Identities=16% Similarity=-0.026 Sum_probs=11.9
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 036263 104 LLDMYAKFGRMDLATVVFD 122 (305)
Q Consensus 104 ll~~~~~~g~~~~a~~~~~ 122 (305)
.+...++.|+.+....+++
T Consensus 5 ~L~~A~~~g~~~~v~~ll~ 23 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLE 23 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3455667788876655554
No 352
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.85 E-value=2.8e+02 Score=23.84 Aligned_cols=93 Identities=14% Similarity=0.016 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 036263 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR 209 (305)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 209 (305)
|..-...+...|++++|.++-..- ..|+--+..|.+.+-..=...|+..-...+|..+.+.| ..+..----+++.-..
T Consensus 364 ~~~~F~~l~~~g~y~~AA~~aA~s-P~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~ 441 (494)
T 1bpo_A 364 FARKFNALFAQGNYSEAAKVAANA-PKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQ 441 (494)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHS-GGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-ccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHh
Confidence 333455677789999998877654 34566677888777777677788888888888888887 5666555556666667
Q ss_pred cCChHHHHHHHHhcc
Q 036263 210 FGCIEFARQVFQRMH 224 (305)
Q Consensus 210 ~g~~~~a~~~~~~~~ 224 (305)
.|+.+-.++.+.+=+
T Consensus 442 q~r~~llekWl~e~K 456 (494)
T 1bpo_A 442 QGRKQLLEKWLKEDK 456 (494)
T ss_dssp TTCHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHhcCC
Confidence 777776666665544
No 353
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=28.32 E-value=1e+02 Score=24.86 Aligned_cols=42 Identities=10% Similarity=0.240 Sum_probs=27.1
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+-
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l 255 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFC 255 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 345555666666666666666666666666666777766665
No 354
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=28.19 E-value=47 Score=21.91 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=15.4
Q ss_pred HHhcCChHHHHHHHHhcCc
Q 036263 108 YAKFGRMDLATVVFDVMRG 126 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~ 126 (305)
.++.|++++|.+.+++..+
T Consensus 32 ~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 32 FAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4678999999999888753
No 355
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.11 E-value=33 Score=23.52 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=10.4
Q ss_pred HHHHHhcCChHHHHHHHHh
Q 036263 105 LDMYAKFGRMDLATVVFDV 123 (305)
Q Consensus 105 l~~~~~~g~~~~a~~~~~~ 123 (305)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344455666666666555
No 356
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.84 E-value=91 Score=23.78 Aligned_cols=91 Identities=8% Similarity=-0.036 Sum_probs=47.6
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHhc--CcCChhHHHHHHHHHhh---------cCCC
Q 036263 133 LLNGFVKRDYFEEALEYFRVMQISGVEP-------DYLTIISVLNVCA--NVRTLGIGLWMHRYVPK---------QDFK 194 (305)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~p-------~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~---------~~~~ 194 (305)
.+...++.|+.+.+..+++.....+... +..-.+.|..++. +.|+.+.+..+++.-.. .+..
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~ 95 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYT 95 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccc
Confidence 3344455677777766776655544322 2333445555553 35777766666665422 1111
Q ss_pred -CChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 195 -DNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 195 -~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
.+..-.+.| ...+..|+.+-+..+++.-.
T Consensus 96 ~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 96 DSYYKGQTAL-HIAIERRNMTLVTLLVENGA 125 (273)
T ss_dssp STTTTTCCHH-HHHHHTTCHHHHHHHHHTTC
T ss_pred cccCCCCCHH-HHHHHcCCHHHHHHHHHCCC
Confidence 122223333 33456678877777777644
No 357
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=27.42 E-value=3.5e+02 Score=24.44 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=27.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhc
Q 036263 46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA 91 (305)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 91 (305)
..| ++|-.|.|.|.+++|.++.++.... ..--...|...+..++
T Consensus 154 p~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 154 PIW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp EHH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 367 6788899999999999998776432 1111134555555554
No 358
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.17 E-value=97 Score=22.99 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=10.4
Q ss_pred HHHHHcCCChHHHHHHHHH
Q 036263 134 LNGFVKRDYFEEALEYFRV 152 (305)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~ 152 (305)
+..|.+.|.+++|.++|++
T Consensus 124 V~VCiekg~Fk~A~eiLkr 142 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFER 142 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHH
Confidence 3445555555555555555
No 359
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.07 E-value=1.8e+02 Score=20.99 Aligned_cols=80 Identities=13% Similarity=0.022 Sum_probs=38.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036263 195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274 (305)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 274 (305)
++..+-...+.++.+.|+.+....+.+.+.+++...-...+.++...|+.+ +...+..+.+ .++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 444555555556666555444444444444555555555555555555433 3333333332 234444444445555
Q ss_pred ccCc
Q 036263 275 HAGL 278 (305)
Q Consensus 275 ~~g~ 278 (305)
+.+.
T Consensus 169 ~~~~ 172 (211)
T 3ltm_A 169 EIGG 172 (211)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 4444
No 360
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.99 E-value=1e+02 Score=22.60 Aligned_cols=175 Identities=12% Similarity=-0.066 Sum_probs=86.8
Q ss_pred HHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhcCcC
Q 036263 105 LDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY---LTIISVLNVCANVR 176 (305)
Q Consensus 105 l~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~ 176 (305)
+...++.|+++....+++.-+. ...-.+.+...+..|+.+-+ +.+.+.|..++. ...+.+. ..+..|
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~ 84 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIV----EFLLQLGVPVNDKDDAGWSPLH-IAASAG 84 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCCHHH-HHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCCHHH-HHHHcC
Confidence 4556778999999998876543 11122344445556665544 444455655432 2223333 334455
Q ss_pred ChhHHHHHHHHHhhcCCCCChhH--HHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHH
Q 036263 177 TLGIGLWMHRYVPKQDFKDNVRV--CNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYF 251 (305)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~ 251 (305)
+.+. ++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..+ +....+. +...+..|+.+-+..+
T Consensus 85 ~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~L- 158 (231)
T 3aji_A 85 XDEI----VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA-MHRAAAKGNLKMVHIL- 158 (231)
T ss_dssp CHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHHTCHHHHHHH-
T ss_pred HHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHH-
Confidence 6544 444455554443211 122344456678888777777654433 2222222 3344556666544444
Q ss_pred HHHHHCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263 252 NLMQKGVFKTDE---VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 252 ~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
.+.|..++. .-.+. +...++.|+.+-+ +.+. ..|..|+.
T Consensus 159 ---l~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll-~~ga~~~~ 200 (231)
T 3aji_A 159 ---LFYKASTNIQDTEGNTP-LHLACDEERVEEA----KFLV-TQGASIYI 200 (231)
T ss_dssp ---HHTTCCSCCCCTTSCCH-HHHHHHTTCHHHH----HHHH-HTTCCSCC
T ss_pred ---HhcCCCccccCCCCCCH-HHHHHHCCCHHHH----HHHH-HCCCCCCC
Confidence 445544432 11222 3333455665443 4444 45666653
No 361
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.97 E-value=1.2e+02 Score=22.07 Aligned_cols=169 Identities=11% Similarity=0.006 Sum_probs=71.4
Q ss_pred HHhcCChHHHHHHHHhcCcc-----ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhcCcCChh
Q 036263 108 YAKFGRMDLATVVFDVMRGC-----DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY---LTIISVLNVCANVRTLG 179 (305)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~ 179 (305)
.++.|+.+-+..+++.-... ..-.+.+...+..|+.+-+ +.+.+.|..++. ...+.+ ...+..|+.+
T Consensus 49 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~ 123 (240)
T 3eu9_A 49 AAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV----VQLMKYGADPSLIDGEGCSCI-HLAAQFGHTS 123 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH
T ss_pred HHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCHH-HHHHHcCHHH
Confidence 34557777766666654431 1012233444445555433 333444544432 222223 3334445554
Q ss_pred HHHHHHHHHhhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhcc-cC---chhhHHHHHHHHHhcCChHHHHHHHH
Q 036263 180 IGLWMHRYVPKQDFKDNV---RVCNTLMDVYSRFGCIEFARQVFQRMH-KR---TLVSWNSIIVGFAVNGFVGEALEYFN 252 (305)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~-~~---~~~~~~~li~~~~~~g~~~~a~~~~~ 252 (305)
-+ +.+.+.|..++. .-.+.+..+..+.+.. +..+++.+.. .. +...-.+.+...+..|+.+-+..+++
T Consensus 124 ~~----~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~-~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 198 (240)
T 3eu9_A 124 IV----AYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV-DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198 (240)
T ss_dssp HH----HHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS-TTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HH----HHHHhcCCCccccCCCCCcHHHHHHHhCChH-HHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 33 333444443322 2223444443343333 3334433332 22 11111123444556677664444443
Q ss_pred HHHHCCCCCCHHH--HHHHHHHHhccCcHHHHHHHHHHHH
Q 036263 253 LMQKGVFKTDEVS--FTGALTACSHAGLIEDGLQYFDIMK 290 (305)
Q Consensus 253 ~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~ 290 (305)
.|..++... -...+....+.|+.+-+..+++.-.
T Consensus 199 ----~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 199 ----AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp ----HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred ----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence 344443211 0122344455677766665555433
No 362
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=26.19 E-value=1.4e+02 Score=20.12 Aligned_cols=54 Identities=11% Similarity=0.035 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHH
Q 036263 128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM 184 (305)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 184 (305)
..|--.|...+.+|+.+-|.++++-..+.| +...|.+.+-.|...=+++.+.++
T Consensus 33 kLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 33 SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 345555555556666666666666555543 344555555555555555555443
No 363
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=26.12 E-value=4.7e+02 Score=26.02 Aligned_cols=83 Identities=11% Similarity=0.085 Sum_probs=54.5
Q ss_pred hHHHHHHHHhccc----CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263 213 IEFARQVFQRMHK----RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288 (305)
Q Consensus 213 ~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (305)
.++-.+.|.++.+ .|.......+..-.+++++..|++++.++.+.. |+...|..++..+...| |+....+.+.
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~-w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG-HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 3344555666554 233333333444457899999999999998864 78888988887776554 6666777777
Q ss_pred HHHHhCCCCCc
Q 036263 289 MKKIYRVSPQI 299 (305)
Q Consensus 289 m~~~~~~~p~~ 299 (305)
+. .....++.
T Consensus 1342 ~~-~~~~p~~~ 1351 (1354)
T 3lxu_X 1342 MM-ITAFPSSF 1351 (1354)
T ss_dssp HH-HHHSCSSC
T ss_pred hh-hhhCcccC
Confidence 66 55555543
No 364
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.91 E-value=1.1e+02 Score=18.02 Aligned_cols=51 Identities=10% Similarity=-0.004 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036263 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED 281 (305)
Q Consensus 230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 281 (305)
.++-++..++...-.+.++..+++..+.|. .+..+|..-++..++..-+..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaReQF~~R 54 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQQFLVR 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 466777788887788999999999988884 567777777777777554443
No 365
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.61 E-value=2.1e+02 Score=21.28 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=17.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263 240 VNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275 (305)
Q Consensus 240 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 275 (305)
+..|.+.|+-++-+|.+.| .|....=..++.+...
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 3455555555555555555 4443333333334333
No 366
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=24.88 E-value=69 Score=19.83 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHHHHHhCCCCCc
Q 036263 278 LIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 278 ~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
..+++...|.+|....++.|+.
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~ 36 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFS 36 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSS
T ss_pred CHHHHHHHHHHHHHHcCcCCCC
Confidence 4678888888888888888763
No 367
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.59 E-value=3.5e+02 Score=23.56 Aligned_cols=63 Identities=8% Similarity=-0.160 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCC-CCCh--hHH-HHHHHHHHhcCChHHHHHHHHhcc
Q 036263 162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNV--RVC-NTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
...+|.++..|...+.++.|..+.....--.. .++. ..| -.+...+.-.+++.+|.+.+....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 56678888889999999999998887742110 1111 222 234556667888999988887754
No 368
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.82 E-value=1.5e+02 Score=18.90 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 036263 231 WNSIIVGFAVNGFVGEALEYFNL 253 (305)
Q Consensus 231 ~~~li~~~~~~g~~~~a~~~~~~ 253 (305)
+..-...+.+.|+|++|++..+.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHH
Confidence 34445555566666665555443
No 369
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=23.52 E-value=2.5e+02 Score=24.74 Aligned_cols=54 Identities=13% Similarity=0.003 Sum_probs=21.0
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036263 227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG 282 (305)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 282 (305)
+..--.-++..|.+.|-.+.|.++++.+-..-+. +...+ ..+..|+|+|+++.+
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 4444555677777788788888887777654322 33444 456677777777654
No 370
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.42 E-value=2.8e+02 Score=22.08 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCc---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036263 200 CNTLMDVYSRFGCIEFARQVFQRMHKRT---LVSWNSIIVGFAVNGF--VGEALEYFNLMQKGVFKTDEVSFTGALTACS 274 (305)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 274 (305)
...++.-|...|+.++|.+.++++..|. ......+..++=+.++ .+.+..++..+.+.|+-+.......+-+.+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl~ 248 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYN 248 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999998762 2334444444444333 4567788999988886665555444444443
Q ss_pred ccCc----HHHHHHHHHHHH
Q 036263 275 HAGL----IEDGLQYFDIMK 290 (305)
Q Consensus 275 ~~g~----~~~a~~~~~~m~ 290 (305)
...+ ...|..++..+.
T Consensus 249 ~l~Dl~lDiP~A~~~la~~v 268 (307)
T 2zu6_B 249 EIPDINLDVPHSYSVLERFV 268 (307)
T ss_dssp HHHHHHHHCTTHHHHHHHHH
T ss_pred hccHhhcccccHHHHHHHHH
Confidence 3332 234455544443
No 371
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=22.96 E-value=98 Score=20.88 Aligned_cols=53 Identities=0% Similarity=-0.017 Sum_probs=41.7
Q ss_pred HHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220 (305)
Q Consensus 165 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 220 (305)
|.-.|...+..++.+.|+++++-.++.| +...|.+++-.|...=+++-+.++-
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEla 87 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLELA 87 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHHH
Confidence 4445677788899999999999888876 5677888888888888888877763
No 372
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=22.48 E-value=90 Score=18.65 Aligned_cols=22 Identities=27% Similarity=0.222 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHHHHHhCCCCCc
Q 036263 278 LIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 278 ~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
..++|.+.|.+|.++.++.|+.
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~ 34 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNA 34 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTC
T ss_pred CHHHHHHHHHHHHHHcCcCCCC
Confidence 4678888888888888887753
No 373
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=22.42 E-value=2.4e+02 Score=22.32 Aligned_cols=42 Identities=2% Similarity=0.068 Sum_probs=25.3
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263 183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH 224 (305)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (305)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++++.+-
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l 216 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLL 216 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 345555556666666666666666665555666666666554
No 374
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=22.31 E-value=3.7e+02 Score=23.08 Aligned_cols=137 Identities=8% Similarity=-0.101 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263 141 DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVF 220 (305)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 220 (305)
.+.+.|.++- .+.|++--...|.--.+.+...|++++|.++-.... .|+--+..|.+.+-.+=..-|...--..+|
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 4455444443 233344344445555556666666666655543322 222233344333333222333333344444
Q ss_pred Hhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263 221 QRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM 289 (305)
Q Consensus 221 ~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 289 (305)
..+.+ .+..----+++.-...|+.+-..+++.+ ..+..+...=.. + +..+...|..+|.+.
T Consensus 419 ~~Ll~~g~Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeLGDl-v----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 419 GILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGDL-V----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHHH-H----HHHCSHHHHHHHHHH
T ss_pred HHHhccCccchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHhHhh-h----hhcCHHHHHHHHHHc
Confidence 44332 1221112223333444444444333332 224444433222 2 333556777776644
No 375
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=22.11 E-value=1.8e+02 Score=21.05 Aligned_cols=19 Identities=5% Similarity=0.190 Sum_probs=10.2
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 036263 52 ISRHCRSGCILEAALEFTR 70 (305)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~ 70 (305)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHS 24 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhc
Confidence 3444556666555555544
No 376
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.82 E-value=2.2e+02 Score=20.26 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=21.9
Q ss_pred HhcCChHHHHHHHHhcCcccc---HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 036263 109 AKFGRMDLATVVFDVMRGCDF---WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161 (305)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 161 (305)
++.|+++....+++.-..... -.+.+...+..|..+.-.++.+.+.+.|..++
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 344555555555544322111 11223333344444433444444445554443
No 377
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.80 E-value=2.5e+02 Score=21.57 Aligned_cols=167 Identities=9% Similarity=-0.022 Sum_probs=89.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHhcC
Q 036263 103 ALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL---TIISVLNVCAN 174 (305)
Q Consensus 103 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~~ 174 (305)
+.+...+..|+.+-+..+++.-.+ ..-++. +...+..|+.+-+.-++ +.|..++.. .+.+.+...+.
T Consensus 64 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~ 138 (285)
T 3kea_A 64 FPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTA-LYYAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVM 138 (285)
T ss_dssp CHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHHH
Confidence 345566777888888877775433 112333 44445667766554444 445554432 22344444555
Q ss_pred cCChhHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHH
Q 036263 175 VRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEY 250 (305)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~ 250 (305)
.|+.+-+ +.+.+.|..+ +...-.+.+...+..|..+-+.-+++.-..+ +..-++..+...+..|+. ++
T Consensus 139 ~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~ 210 (285)
T 3kea_A 139 LNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EM 210 (285)
T ss_dssp TTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HH
T ss_pred cCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HH
Confidence 6666544 4444545333 2212334455556788888877777664433 222333334444556664 45
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036263 251 FNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD 287 (305)
Q Consensus 251 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 287 (305)
.+.+.+.|..|+.... .-...|+.+-+..+++
T Consensus 211 v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~ 242 (285)
T 3kea_A 211 LQALFKYDINIYSANL-----ENVLLDDAEIAKMIIE 242 (285)
T ss_dssp HHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHH
Confidence 5666777877776542 1134566655544443
No 378
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.80 E-value=2e+02 Score=22.92 Aligned_cols=142 Identities=8% Similarity=-0.054 Sum_probs=76.1
Q ss_pred HHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChh
Q 036263 105 LDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLG 179 (305)
Q Consensus 105 l~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 179 (305)
+...+..|+.+.+..+++.-.+ ..-++. +...+..|+.+-+.-+ .+.|..++...-.+.+...+..|+.+
T Consensus 24 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~-L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~ 98 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTA-LHLACKFGCVDTAKYL----ASVGEVHSLWHGQKPIHLAVMANKTD 98 (364)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHCCHHHHHHH----HHHCCCCCCBTTBCHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccCCCCCcH-HHHHHHcCCHHHHHHH----HHCCCCccccCCCCHHHHHHHcCCHH
Confidence 3445667999988888876332 112333 4444556766554444 44444443322222344445678888
Q ss_pred HHHHHHHHHhhcCCCCCh--------------------hHHHHHHHHHHhcC--ChHHHHHHHHhcccC---chhhHHHH
Q 036263 180 IGLWMHRYVPKQDFKDNV--------------------RVCNTLMDVYSRFG--CIEFARQVFQRMHKR---TLVSWNSI 234 (305)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~--------------------~~~~~li~~~~~~g--~~~~a~~~~~~~~~~---~~~~~~~l 234 (305)
.+..+++.....|..++. .-.+. +...+..| +.+-+..+++.-..+ +..-.+.|
T Consensus 99 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L 177 (364)
T 3ljn_A 99 LVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTA-LHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL 177 (364)
T ss_dssp HHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCH-HHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred HHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCH-HHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 887777775554544332 11233 44445667 677676676654332 22223333
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 036263 235 IVGFAVNGFVGEALEYFNL 253 (305)
Q Consensus 235 i~~~~~~g~~~~a~~~~~~ 253 (305)
...+..|+.+-+..+++.
T Consensus 178 -~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 178 -MRAMEFRNREALDLMMDT 195 (364)
T ss_dssp -HHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHcCCHHHHHHHHhc
Confidence 344567777766666554
No 379
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=21.67 E-value=1.5e+02 Score=18.16 Aligned_cols=58 Identities=12% Similarity=0.009 Sum_probs=39.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhCCCCCcccccc
Q 036263 247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGL--IEDGLQYFDIMKKIYRVSPQIEHHGC 304 (305)
Q Consensus 247 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~y~~ 304 (305)
+..+-++...-|+.|+......++.-|...+. -+-+.++.--+....|..|+.++.+.
T Consensus 5 ~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s~~~~~lt~~~L~~ 64 (78)
T 4e2i_2 5 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNS 64 (78)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCCCHHHHHHHHTTHHHHTTCCCCCTTTTTG
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 56677788888999998888888877765443 23344444444445678888877654
No 380
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.56 E-value=59 Score=23.87 Aligned_cols=175 Identities=9% Similarity=-0.080 Sum_probs=84.0
Q ss_pred HHHHHhcCChHHHHHHHHhcCcc-----ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHhc
Q 036263 105 LDMYAKFGRMDLATVVFDVMRGC-----DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD------YLTIISVLNVCA 173 (305)
Q Consensus 105 l~~~~~~g~~~~a~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~t~~~ll~~~~ 173 (305)
+...++.|+.+.+..+++.-... ..-.+.+...+..|+.+-+.. +.+.|-.++ ....+.+.. .+
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~~~g~t~L~~-A~ 80 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSF----LLSKMENVNLDDYPDDSGWTPFHI-AC 80 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHH----HHHTCTTCCGGGCCCTTSCCHHHH-HH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHH----HHhccccccccccCCCCCCCHHHH-HH
Confidence 44466788988888888765431 111234444556676655444 444442222 222333333 33
Q ss_pred CcCChhHHHHHHHHHhhcC--CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChH
Q 036263 174 NVRTLGIGLWMHRYVPKQD--FKDN---VRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVG 245 (305)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~--~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 245 (305)
..|+.+. ++.+.+.| ..++ ..-.+ .+...+..|+.+-+..+++.-..+ +..-.+. +...+..|+.+
T Consensus 81 ~~~~~~~----~~~Ll~~g~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~ 154 (228)
T 2dzn_A 81 SVGNLEV----VKSLYDRPLKPDLNKITNQGVT-CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIP-LHRAASVGSLK 154 (228)
T ss_dssp HHCCHHH----HHHHHSSSSCCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH
T ss_pred HcCCHHH----HHHHHhCCCCcccccCCcCCCC-HHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCH-HHHHHHcCCHH
Confidence 4555544 44444544 2221 11222 334445778887777777653332 2222223 33445667665
Q ss_pred HHHHHHHHHHHCC-CCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263 246 EALEYFNLMQKGV-FKTD---EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI 299 (305)
Q Consensus 246 ~a~~~~~~m~~~g-~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 299 (305)
-+ +.+.+.| ..++ ..-.+. +...+..|+.+-+..+++ ..|..++.
T Consensus 155 ~v----~~Ll~~g~~~~~~~d~~g~t~-L~~A~~~~~~~~v~~Ll~----~~ga~~~~ 203 (228)
T 2dzn_A 155 LI----ELLCGLGKSAVNWQDKQGWTP-LFHALAEGHGDAAVLLVE----KYGAEYDL 203 (228)
T ss_dssp HH----HHHHTTTCCCSCCCCTTSCCH-HHHHHHTTCHHHHHHHHH----HHCCCSCC
T ss_pred HH----HHHHhcCcccccCcCCCCCCH-HHHHHHcCCHHHHHHHHH----hcCCCCCc
Confidence 44 3344444 3222 222222 333345677766555543 44665554
No 381
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.49 E-value=2.2e+02 Score=20.18 Aligned_cols=47 Identities=6% Similarity=-0.091 Sum_probs=28.5
Q ss_pred cCChHHHHHHHHhccc----C--chhhHHHHHH-H-----HHhcCChHHHHHHHHHHHH
Q 036263 210 FGCIEFARQVFQRMHK----R--TLVSWNSIIV-G-----FAVNGFVGEALEYFNLMQK 256 (305)
Q Consensus 210 ~g~~~~a~~~~~~~~~----~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 256 (305)
.|++-+|.++++..=+ + ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3777777777776642 2 2345555555 2 2346777777777777654
No 382
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=21.32 E-value=2.2e+02 Score=19.91 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 036263 48 WTSSISRHCRSGCILEAALEFTRM 71 (305)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~m 71 (305)
++.++..+...|-+++...-+.+|
T Consensus 10 ~~~~~~~l~~~g~LD~~f~qL~~L 33 (153)
T 3us6_A 10 WVDYIKSMFMEGFLDGQFLQLQQL 33 (153)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred HHHHHHhcccccchHHHHHHHHHh
Confidence 556667777777777443334443
No 383
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.91 E-value=5.3e+02 Score=24.27 Aligned_cols=123 Identities=6% Similarity=-0.062 Sum_probs=0.0
Q ss_pred HHHHHHhcCcCC---hhHHHHHHHHHhhc--CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc-cCchhhHHHHHHHHH
Q 036263 166 ISVLNVCANVRT---LGIGLWMHRYVPKQ--DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFA 239 (305)
Q Consensus 166 ~~ll~~~~~~~~---~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~ 239 (305)
..++...|..|. .+.|.+.|+..... +.+.++..-..+...-.+.|..++-..+++... ..+..--..++.+++
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~~~~ek~~ll~aL~ 769 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALA 769 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccCCHHHHHHHHHHhC
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263 240 VNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288 (305)
Q Consensus 240 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (305)
...+.+...++++................+..........+.+++.+.+
T Consensus 770 ~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~ 818 (909)
T 4fke_A 770 CSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQS 818 (909)
T ss_dssp TCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHH
Done!