BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036264
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 95/174 (54%), Gaps = 5/174 (2%)
Query: 80 VDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKP-TFMGEAGCGQSCKIANQI 138
+DAPVSGG+IGAR+G L+I G+ V + PLF++LGK T +G G GQ+CK+ANQI
Sbjct: 118 LDAPVSGGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQI 177
Query: 139 VVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRPGGFAEY 198
+V N+ +SE LVFA KAG D + A+ GG A S +E++GER I + F PG +
Sbjct: 178 IVALNIEAVSEALVFASKAGADPVRVRQALXGGFASSRILEVHGERXINRTFEPG----F 233
Query: 199 XXXXXXXXXXXXXXXXXXXXXXLPGAALGKQLFSAMVANGDGKLGTQGLVSVIE 252
LP A ++LF+ ANG +L V +E
Sbjct: 234 KIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAXVQALE 287
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 106/226 (46%), Gaps = 49/226 (21%)
Query: 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKA---------LHLQ------------ 54
+I ++G G G P A RL AGY L V+ R P++A +H Q
Sbjct: 33 KITFLGTGSXGLPXARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVV 92
Query: 55 --------------SQGAFLATSPQHL----AQSFARE-KDCWA---------VDAPVSG 86
+QG A P L A RE +D A +D PVSG
Sbjct: 93 SXLENGAVVQDVLFAQGVAAAXKPGSLFLDXASITPREARDHAARLGALGIAHLDTPVSG 152
Query: 87 GDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFMGEAGCGQSCKIANQIVVGANLLG 146
G +GA G L I A G A + PL +V G+ T +G G GQ K+ANQ +VG +
Sbjct: 153 GTVGAEQGTLVIXAGGKPADFERSLPLLKVFGRATHVGPHGSGQLTKLANQXIVGITIGA 212
Query: 147 LSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRP 192
++E L+FA K G D K +AI GG A S ++L+G+R +++DF P
Sbjct: 213 VAEALLFATKGGADXAKVKEAITGGFADSRVLQLHGQRXVERDFAP 258
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 99/229 (43%), Gaps = 51/229 (22%)
Query: 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSF---- 71
++G+IG+G+ G P + LL AGY L V RNP + + GA A++ + +A+
Sbjct: 7 KVGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 66
Query: 72 ---------------------------------------ARE-------KDCWAVDAPVS 85
+RE K +DAPVS
Sbjct: 67 TXLPNSPHVKEVALGENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKGVEXLDAPVS 126
Query: 86 GGDIGARDGKLAIFAAGDSAVVQWLTPLFEVL-GKPTFMGEAGCGQSCKIANQIVVGANL 144
GG+ A DG L++ GD A+ L + G G+ G G K+ANQ++V N+
Sbjct: 127 GGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNVTKLANQVIVALNI 186
Query: 145 LGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRPG 193
SE L A KAG++ AI+GG AGS ++ + ++F+PG
Sbjct: 187 AAXSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPXVXDRNFKPG 235
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 100/228 (43%), Gaps = 51/228 (22%)
Query: 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHL-------- 67
+G++G+G+MG M+ LL G+ +TV+ R SK L GA + SP +
Sbjct: 23 EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 82
Query: 68 --------AQSFAREK--------------DCWAVDA--------------------PVS 85
A S +K D VDA PVS
Sbjct: 83 AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVS 142
Query: 86 GGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTF-MGEAGCGQSCKIANQIVVGANL 144
G A DG+L I AAGD A+ + P F+VLGK +F +G+ G G K+ +++G+ +
Sbjct: 143 GSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMM 202
Query: 145 LGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRP 192
SEGLV ADK+GL +D + GA + + G M K + P
Sbjct: 203 NAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPP 250
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 97/228 (42%), Gaps = 51/228 (22%)
Query: 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSF---- 71
+ G+IG+G+MGS MA L+ AG +T++ R+P KA L + GA A +P + +S
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTF 62
Query: 72 -------AREKDCWA---------------------------------------VDAPVS 85
A E+ C+ ++APVS
Sbjct: 63 AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVS 122
Query: 86 GGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTF-MGEAGCGQSCKIANQIVVGANL 144
G A DG L I AAGD + P FE +GK +G+ G G K+ +V+G +
Sbjct: 123 GSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMM 182
Query: 145 LGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRP 192
EGL +KAGL +D I GA + L G + ++F P
Sbjct: 183 ACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAP 230
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 111/294 (37%), Gaps = 58/294 (19%)
Query: 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFA------------------------------- 44
+IG+IG+G MG PMA LL G +TV+A
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEG--VTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDI 63
Query: 45 ---------------RNPSKALHLQSQGAFL----ATSPQHLAQ--SFAREKDCWAVDAP 83
P L G + + SP + A EK VDAP
Sbjct: 64 IFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAP 123
Query: 84 VSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTF-MGEAGCGQSCKIANQIVVGA 142
VSGG GA G L I AV + + P+ V+GK + +G+ G G + KI N +++G
Sbjct: 124 VSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGC 183
Query: 143 NLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRPGGFAEYXXXX 202
N+ L+E LV K GL + I + S AME E+ I GGFA
Sbjct: 184 NMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFA---MDL 240
Query: 203 XXXXXXXXXXXXXXXXXXLPGAALGKQLFSAMVANGDGKLGTQGLVSVIERING 256
LP A+ Q+F A G G+ ++ V E++ G
Sbjct: 241 QHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTG 294
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 51/224 (22%)
Query: 18 GWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQH----------- 66
G++G+G+MG PMA+ L+ AG+ +TV+ RNP+K L + GA A+SP
Sbjct: 5 GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64
Query: 67 LAQSFAREKDCWA---------------------------------------VDAPVSGG 87
LA A + C+ ++APVSG
Sbjct: 65 LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGT 124
Query: 88 DIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTF-MGEAGCGQSCKIANQIVVGANLLG 146
A DG L I AAGD ++ P F LGK +GE G G K+ +++G +
Sbjct: 125 KKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTA 184
Query: 147 LSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDF 190
L EG+ GLD + ++ + GA + + G+ ++ +F
Sbjct: 185 LGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEF 228
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 51/234 (21%)
Query: 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS----F 71
+IG++G+GLMGS + S LL G+ +TV+ R K +GA L +P + + F
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 72 A----------------------REKDCWA------------------------VDAPVS 85
A R C+ ++APVS
Sbjct: 92 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151
Query: 86 GGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANL 144
G + DG L I AAGD + + + F+ +GK + F+GE G + +V G+ +
Sbjct: 152 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 211
Query: 145 LGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRPGGFAEY 198
++EGL A G + +D + G S+ ++ + +++ +F+P + +Y
Sbjct: 212 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKY 265
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 88/228 (38%), Gaps = 49/228 (21%)
Query: 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS----- 70
++ +IG+G MG PMA L A + V+ R KAL Q + A + +A++
Sbjct: 3 KVAFIGLGAMGYPMAGHL-ARRFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFT 61
Query: 71 -----------------FAREKDCWA------------------------VDAPVSGGDI 89
+ RE W +DAPVSGG
Sbjct: 62 CLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTS 121
Query: 90 GARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFMGEAGCGQSCKIANQIVVGANLLGLSE 149
GA G L + G V+ + P K +G G G + K N ++ NL E
Sbjct: 122 GAEAGTLTVMLGGPEEAVERVRPFLAYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGE 181
Query: 150 GLVFADKAGLDVRKWMDAIKGGAAGSMAME-LYGERMIKKDFRPGGFA 196
GL+ K G+ K ++ I + S A E L +R++ + F P FA
Sbjct: 182 GLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAF-PKTFA 228
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 3/133 (2%)
Query: 65 QHLAQSFAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFMG 124
+ LA+ REK +DAPVSGG GA G L + G V+ + P K +G
Sbjct: 98 RRLAERL-REKGVTYLDAPVSGGTSGAEAGTLTVXLGGPEEAVERVRPFLAYAKKVVHVG 156
Query: 125 EAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAME-LYGE 183
G G + K N ++ NL EGL+ K G+ K ++ I + S A E L +
Sbjct: 157 PVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQ 216
Query: 184 RMIKKDFRPGGFA 196
R++ + F P FA
Sbjct: 217 RVLTRAF-PKTFA 228
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 85/217 (39%), Gaps = 51/217 (23%)
Query: 16 RIGWIGIGLMGSPMASRLLAAGYFLTVF-------------------------------- 43
+I +IG+G G+P A+ LL AGY L VF
Sbjct: 4 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 63
Query: 44 ----ARNPSKALHLQSQGAFLATSPQHLA--------------QSFAREKDCWAVDAPVS 85
A + L+L G +P L + ARE+ +DAPVS
Sbjct: 64 SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 123
Query: 86 GGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFM-GEAGCGQSCKIANQIVVGANL 144
GG GA G L GD+ ++ PLFE G+ F G G GQ K+ N ++
Sbjct: 124 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLX 183
Query: 145 LGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELY 181
+G +E GL+ + + + + G+ A+E+Y
Sbjct: 184 IGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVY 220
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 85/217 (39%), Gaps = 51/217 (23%)
Query: 16 RIGWIGIGLMGSPMASRLLAAGYFLTVF-------------------------------- 43
+I +IG+G G+P A+ LL AGY L VF
Sbjct: 5 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 64
Query: 44 ----ARNPSKALHLQSQGAFLATSPQHLA--------------QSFAREKDCWAVDAPVS 85
A + L+L G +P L + ARE+ +DAPVS
Sbjct: 65 SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 124
Query: 86 GGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFM-GEAGCGQSCKIANQIVVGANL 144
GG GA G L GD+ ++ PLFE G+ F G G GQ K+ N ++
Sbjct: 125 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLX 184
Query: 145 LGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELY 181
+G +E GL+ + + + + G+ A+E+Y
Sbjct: 185 IGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVY 221
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 74/197 (37%), Gaps = 51/197 (25%)
Query: 17 IGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQ------- 69
+G+IG+G MG+PMA L+ GY L ++ P Q G + +SP +A+
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 62
Query: 70 ----------------------------------------SFAREKDCWA---VDAPVSG 86
A+E + +DAPVSG
Sbjct: 63 MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSG 122
Query: 87 GDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLL 145
G AR G L G L +G + G G GQ+ KI N +++ +++
Sbjct: 123 GVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMI 182
Query: 146 GLSEGLVFADKAGLDVR 162
G +E + + GLD +
Sbjct: 183 GTAEAMNLGIRLGLDPK 199
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 74/197 (37%), Gaps = 51/197 (25%)
Query: 17 IGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQ------- 69
+G+IG+G MG+PMA L+ GY L ++ P Q G + +SP +A+
Sbjct: 25 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 84
Query: 70 ----------------------------------------SFAREKDCWA---VDAPVSG 86
A+E + +DAPVSG
Sbjct: 85 MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSG 144
Query: 87 GDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLL 145
G AR G L G L +G + G G GQ+ KI N +++ +++
Sbjct: 145 GVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMI 204
Query: 146 GLSEGLVFADKAGLDVR 162
G +E + + GLD +
Sbjct: 205 GTAEAMNLGIRLGLDPK 221
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 85/233 (36%), Gaps = 59/233 (25%)
Query: 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL--------------- 60
++G+IG+G MG+PMA+R+ +TV+ L GA L
Sbjct: 17 KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHI 76
Query: 61 ----------------------------ATSPQHLAQSFARE---KDCWAVDAPVSGGDI 89
+T A AR+ +D VDAPVSGG
Sbjct: 77 TVLDDAQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAA 136
Query: 90 GARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFM-GEAGCGQSCKIANQIVVGANLLGLS 148
A G+LA D V + + P F+ GE G G K+A ++ +
Sbjct: 137 AAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAAC 196
Query: 149 EGLVFADKAGLDVR------KWMDAIKGGAAGSMAMELYGERMIKKDFRPGGF 195
E + A+ AGLD++ + DA+ GG M R KD P F
Sbjct: 197 EAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMV------RDNMKDLEPDNF 243
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 80 VDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFM--GEAGCGQSCKIANQ 137
+DAPVSGG + A G+ + A+G A L P+ + + + G G + KI +Q
Sbjct: 124 LDAPVSGGAVKAAQGEXTVXASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQ 183
Query: 138 IVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRP 192
++ G ++ +E A +AG+ + D + A S E + ++ D+ P
Sbjct: 184 LLAGVHIAAAAEAXALAARAGIPLDVXYDVVTHAAGNSWXFENRXQHVVDGDYTP 238
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGA 58
+I ++G+G +G+P+A LL AGY L V+ R SKA L GA
Sbjct: 7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGA 49
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAR 73
+IG +G+ +MG +A + + GY ++VF R+ K + ++ P + Q F
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVQEFVE 74
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 49/139 (35%), Gaps = 26/139 (18%)
Query: 23 GLMGSPMASRLLAAGYFLTVFARNPS---KALHLQSQGAFLATSPQHLAQSFAREKDCWA 79
G +GS + RLL GY + R+P+ K HL L + HL W
Sbjct: 15 GFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLD----LPKAETHLT--------LWK 62
Query: 80 VDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFMGEAGCGQSCKIANQIV 139
D G A G +F + P EV+ KPT G G +SC A +
Sbjct: 63 ADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVI-KPTIEGMLGIMKSCAAAKTV- 120
Query: 140 VGANLLGLSEGLVFADKAG 158
LVF AG
Sbjct: 121 ---------RRLVFTSSAG 130
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 29/58 (50%)
Query: 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAR 73
+IG +G+ +MG +A + + GY +++F R+ K + ++ P + + F
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVE 74
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 29/58 (50%)
Query: 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAR 73
+IG +G+ +MG +A + + GY +++F R+ K + ++ P + + F
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVE 74
>pdb|2VNS|A Chain A, Crystal Structure Of The Membrane Proximal
Oxidoreductase Domain Of Human Steap3, The Dominant
Ferric Reductase Of The Erythroid Transferrin Cycle
pdb|2VNS|B Chain B, Crystal Structure Of The Membrane Proximal
Oxidoreductase Domain Of Human Steap3, The Dominant
Ferric Reductase Of The Erythroid Transferrin Cycle
pdb|2VQ3|A Chain A, Crystal Structure Of The Membrane Proximal
Oxidoreductase Domain Of Human Steap3, The Dominant
Ferric Reductase Of The Erythroid Transferrin Cycle
pdb|2VQ3|B Chain B, Crystal Structure Of The Membrane Proximal
Oxidoreductase Domain Of Human Steap3, The Dominant
Ferric Reductase Of The Erythroid Transferrin Cycle
Length = 215
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHL 53
++G +G G +A+RL+ +G+ + V +RNP + L
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARL 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,699,174
Number of Sequences: 62578
Number of extensions: 249295
Number of successful extensions: 708
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 45
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)