Query 036264
Match_columns 257
No_of_seqs 269 out of 1840
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 10:59:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0409 Predicted dehydrogenas 100.0 2.6E-52 5.6E-57 345.9 27.5 242 12-257 33-326 (327)
2 COG2084 MmsB 3-hydroxyisobutyr 100.0 2.6E-52 5.6E-57 351.9 27.5 234 15-252 1-286 (286)
3 PRK15059 tartronate semialdehy 100.0 6.5E-46 1.4E-50 319.5 28.8 237 15-256 1-288 (292)
4 PRK15461 NADH-dependent gamma- 100.0 6E-45 1.3E-49 314.6 28.6 239 15-257 2-292 (296)
5 PLN02858 fructose-bisphosphate 100.0 2.3E-42 4.9E-47 344.7 28.5 240 14-257 4-297 (1378)
6 TIGR01692 HIBADH 3-hydroxyisob 100.0 5.9E-42 1.3E-46 295.1 26.1 229 19-251 1-287 (288)
7 TIGR01505 tartro_sem_red 2-hyd 100.0 3E-41 6.5E-46 291.3 28.7 238 16-257 1-289 (291)
8 PRK11559 garR tartronate semia 100.0 7E-41 1.5E-45 289.7 29.0 239 15-257 3-292 (296)
9 PLN02858 fructose-bisphosphate 100.0 4.8E-40 1E-44 328.2 28.7 240 14-257 324-617 (1378)
10 PRK12490 6-phosphogluconate de 100.0 4E-37 8.8E-42 266.2 23.4 231 15-252 1-292 (299)
11 PLN02350 phosphogluconate dehy 100.0 6.8E-37 1.5E-41 277.5 24.0 217 14-235 6-298 (493)
12 PRK09599 6-phosphogluconate de 100.0 5.2E-35 1.1E-39 253.4 23.3 230 15-252 1-293 (301)
13 TIGR00872 gnd_rel 6-phosphoglu 100.0 6.9E-31 1.5E-35 227.1 25.4 234 15-256 1-291 (298)
14 PTZ00142 6-phosphogluconate de 100.0 9.3E-30 2E-34 230.7 22.5 208 15-227 2-283 (470)
15 TIGR00873 gnd 6-phosphoglucona 100.0 2.7E-29 5.8E-34 227.8 21.3 207 16-227 1-279 (467)
16 COG1023 Gnd Predicted 6-phosph 100.0 9.2E-28 2E-32 193.4 21.4 227 15-253 1-289 (300)
17 PRK09287 6-phosphogluconate de 100.0 9.8E-28 2.1E-32 216.8 21.0 197 25-226 1-271 (459)
18 TIGR03026 NDP-sugDHase nucleot 100.0 9.4E-27 2E-31 209.9 21.7 205 15-234 1-296 (411)
19 PRK14618 NAD(P)H-dependent gly 99.9 5.1E-27 1.1E-31 205.8 14.1 229 13-252 3-321 (328)
20 PF14833 NAD_binding_11: NAD-b 99.9 5.9E-24 1.3E-28 160.3 14.4 121 127-251 1-122 (122)
21 PRK00094 gpsA NAD(P)H-dependen 99.9 1.5E-23 3.3E-28 183.5 17.7 227 14-252 1-323 (325)
22 COG0362 Gnd 6-phosphogluconate 99.9 5.4E-23 1.2E-27 176.6 19.0 212 14-230 3-288 (473)
23 PF03446 NAD_binding_2: NAD bi 99.9 3.8E-24 8.3E-29 169.4 8.9 112 14-125 1-163 (163)
24 PRK06129 3-hydroxyacyl-CoA deh 99.9 1.3E-21 2.9E-26 170.1 20.9 218 15-249 3-294 (308)
25 PRK15182 Vi polysaccharide bio 99.9 1.4E-21 3E-26 176.1 21.5 202 13-233 5-292 (425)
26 PRK11064 wecC UDP-N-acetyl-D-m 99.9 2.2E-21 4.9E-26 174.7 21.0 199 14-232 3-293 (415)
27 PRK14619 NAD(P)H-dependent gly 99.9 3E-22 6.5E-27 174.1 14.3 223 13-251 3-298 (308)
28 PRK15057 UDP-glucose 6-dehydro 99.9 1.7E-20 3.7E-25 167.2 19.5 201 15-231 1-280 (388)
29 KOG2653 6-phosphogluconate deh 99.8 3.1E-19 6.6E-24 151.5 16.3 211 14-230 6-291 (487)
30 PLN02688 pyrroline-5-carboxyla 99.8 8.2E-19 1.8E-23 149.6 18.0 203 15-238 1-264 (266)
31 COG0240 GpsA Glycerol-3-phosph 99.8 9.2E-19 2E-23 149.7 15.3 227 14-251 1-321 (329)
32 PRK07679 pyrroline-5-carboxyla 99.8 3.8E-18 8.3E-23 146.4 14.6 204 14-238 3-269 (279)
33 PRK08229 2-dehydropantoate 2-r 99.8 1E-17 2.3E-22 147.7 17.5 216 14-241 2-323 (341)
34 COG1004 Ugd Predicted UDP-gluc 99.8 1E-16 2.2E-21 139.1 19.7 200 15-232 1-292 (414)
35 PRK07531 bifunctional 3-hydrox 99.7 4.4E-16 9.6E-21 143.5 18.4 150 15-176 5-225 (495)
36 COG0677 WecC UDP-N-acetyl-D-ma 99.7 5.1E-16 1.1E-20 134.4 16.4 159 14-172 9-254 (436)
37 PLN02353 probable UDP-glucose 99.7 9.3E-15 2E-19 133.2 22.6 203 14-229 1-301 (473)
38 COG0345 ProC Pyrroline-5-carbo 99.7 2.6E-15 5.6E-20 126.2 17.2 211 14-238 1-264 (266)
39 PRK12491 pyrroline-5-carboxyla 99.7 5.9E-15 1.3E-19 126.0 17.8 210 15-238 3-267 (272)
40 PTZ00345 glycerol-3-phosphate 99.6 1.2E-14 2.7E-19 128.2 17.3 234 7-251 4-353 (365)
41 PRK06476 pyrroline-5-carboxyla 99.6 5.7E-14 1.2E-18 119.3 16.9 202 15-235 1-254 (258)
42 PRK12439 NAD(P)H-dependent gly 99.6 1.6E-14 3.4E-19 127.4 13.9 226 14-251 7-327 (341)
43 PRK11880 pyrroline-5-carboxyla 99.6 1.6E-13 3.4E-18 117.1 18.8 208 14-238 2-265 (267)
44 PRK08268 3-hydroxy-acyl-CoA de 99.6 5E-14 1.1E-18 129.9 16.6 141 14-172 7-226 (507)
45 PRK12557 H(2)-dependent methyl 99.6 1.1E-13 2.4E-18 121.4 17.3 155 15-170 1-238 (342)
46 TIGR03376 glycerol3P_DH glycer 99.6 2.4E-14 5.2E-19 125.5 13.0 223 16-249 1-340 (342)
47 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.5 1.4E-13 3E-18 126.7 15.0 140 14-171 5-223 (503)
48 PRK14620 NAD(P)H-dependent gly 99.5 5.9E-13 1.3E-17 116.8 17.9 224 15-250 1-323 (326)
49 PRK08507 prephenate dehydrogen 99.5 3E-12 6.6E-17 109.7 19.7 151 15-170 1-208 (275)
50 PRK06130 3-hydroxybutyryl-CoA 99.5 2.4E-12 5.3E-17 112.2 17.5 150 14-173 4-221 (311)
51 PRK07680 late competence prote 99.5 4.7E-12 1E-16 108.4 17.8 187 15-203 1-241 (273)
52 PTZ00431 pyrroline carboxylate 99.4 7E-12 1.5E-16 106.5 16.7 203 14-238 3-260 (260)
53 PRK11199 tyrA bifunctional cho 99.4 3.4E-11 7.4E-16 107.4 21.7 152 11-166 95-279 (374)
54 PRK09260 3-hydroxybutyryl-CoA 99.4 5.4E-12 1.2E-16 108.8 14.7 140 15-171 2-220 (288)
55 PRK07417 arogenate dehydrogena 99.4 1.7E-12 3.6E-17 111.5 11.4 129 15-143 1-185 (279)
56 PRK08655 prephenate dehydrogen 99.4 8.5E-11 1.8E-15 106.8 20.5 149 15-167 1-201 (437)
57 PRK06928 pyrroline-5-carboxyla 99.4 2.3E-11 4.9E-16 104.3 15.9 207 15-236 2-265 (277)
58 PRK12921 2-dehydropantoate 2-r 99.3 2.3E-10 5E-15 99.3 19.6 204 15-234 1-300 (305)
59 PRK07634 pyrroline-5-carboxyla 99.3 5.8E-11 1.2E-15 99.9 14.8 156 14-172 4-210 (245)
60 PRK07530 3-hydroxybutyryl-CoA 99.3 2.7E-10 5.8E-15 98.5 16.4 147 14-171 4-222 (292)
61 PRK07066 3-hydroxybutyryl-CoA 99.3 2.5E-09 5.4E-14 93.1 21.5 151 14-174 7-226 (321)
62 PRK07819 3-hydroxybutyryl-CoA 99.2 4.9E-10 1.1E-14 96.5 16.9 148 14-171 5-225 (286)
63 PLN02545 3-hydroxybutyryl-CoA 99.2 2.4E-10 5.1E-15 99.0 14.5 140 15-171 5-222 (295)
64 PRK08293 3-hydroxybutyryl-CoA 99.2 6.3E-10 1.4E-14 95.9 16.2 149 14-172 3-225 (287)
65 PRK06522 2-dehydropantoate 2-r 99.2 1.3E-09 2.9E-14 94.4 17.9 205 15-236 1-299 (304)
66 PRK06035 3-hydroxyacyl-CoA deh 99.2 2.9E-10 6.2E-15 98.2 13.6 140 15-171 4-224 (291)
67 PRK06249 2-dehydropantoate 2-r 99.2 1.7E-09 3.8E-14 94.3 17.5 208 13-235 4-309 (313)
68 PRK06545 prephenate dehydrogen 99.1 3.3E-09 7.1E-14 94.3 14.3 149 15-170 1-212 (359)
69 PF01210 NAD_Gly3P_dh_N: NAD-d 99.0 5E-10 1.1E-14 87.9 6.2 55 16-70 1-69 (157)
70 PRK05808 3-hydroxybutyryl-CoA 99.0 2.5E-08 5.5E-13 85.7 16.9 146 14-171 3-221 (282)
71 PRK05708 2-dehydropantoate 2-r 99.0 1.9E-08 4.2E-13 87.4 15.9 207 14-236 2-298 (305)
72 PRK07502 cyclohexadienyl dehyd 99.0 9.6E-09 2.1E-13 89.4 13.8 120 15-134 7-188 (307)
73 PRK05479 ketol-acid reductoiso 99.0 3.3E-08 7.1E-13 86.1 16.1 149 14-164 17-224 (330)
74 COG1893 ApbA Ketopantoate redu 99.0 1.2E-07 2.7E-12 82.3 19.3 208 15-237 1-302 (307)
75 KOG2666 UDP-glucose/GDP-mannos 98.9 4.8E-08 1E-12 82.8 15.5 194 14-220 1-290 (481)
76 TIGR00465 ilvC ketol-acid redu 98.9 5.9E-08 1.3E-12 84.4 14.3 152 14-171 3-217 (314)
77 PLN02712 arogenate dehydrogena 98.8 1.7E-07 3.8E-12 89.3 17.4 112 13-126 368-538 (667)
78 PF03807 F420_oxidored: NADP o 98.8 8.7E-09 1.9E-13 73.9 6.7 55 16-70 1-61 (96)
79 PLN02256 arogenate dehydrogena 98.8 1.9E-07 4.1E-12 81.0 15.5 113 13-126 35-205 (304)
80 TIGR01915 npdG NADPH-dependent 98.8 2.2E-07 4.7E-12 77.0 14.3 41 15-55 1-42 (219)
81 TIGR01724 hmd_rel H2-forming N 98.8 5.6E-06 1.2E-10 71.2 22.2 56 15-70 1-81 (341)
82 PF00984 UDPG_MGDP_dh: UDP-glu 98.7 1.1E-07 2.3E-12 68.2 9.4 90 127-231 2-93 (96)
83 PF02737 3HCDH_N: 3-hydroxyacy 98.7 4.4E-08 9.6E-13 78.6 7.2 37 16-52 1-37 (180)
84 PF03721 UDPG_MGDP_dh_N: UDP-g 98.7 8.5E-08 1.8E-12 77.3 8.4 56 15-70 1-57 (185)
85 PRK08269 3-hydroxybutyryl-CoA 98.7 2.9E-07 6.4E-12 80.2 12.1 64 102-173 156-220 (314)
86 KOG3124 Pyrroline-5-carboxylat 98.7 8.4E-07 1.8E-11 73.4 13.9 201 15-238 1-265 (267)
87 COG0287 TyrA Prephenate dehydr 98.7 2.2E-06 4.8E-11 73.3 17.1 113 14-126 3-172 (279)
88 PRK14806 bifunctional cyclohex 98.7 8.7E-07 1.9E-11 86.0 16.4 55 15-69 4-62 (735)
89 COG2085 Predicted dinucleotide 98.6 3E-07 6.6E-12 74.3 10.3 57 14-70 1-60 (211)
90 PLN02712 arogenate dehydrogena 98.6 2.7E-06 5.8E-11 81.3 18.1 53 14-67 52-104 (667)
91 COG1250 FadB 3-hydroxyacyl-CoA 98.6 3E-06 6.4E-11 73.1 16.0 148 14-173 3-223 (307)
92 TIGR00112 proC pyrroline-5-car 98.6 3.1E-06 6.8E-11 71.3 14.9 185 37-235 9-244 (245)
93 PRK11730 fadB multifunctional 98.5 3.8E-06 8.3E-11 81.1 15.9 39 14-52 313-351 (715)
94 TIGR02440 FadJ fatty oxidation 98.5 5.4E-06 1.2E-10 79.8 15.2 39 14-52 304-343 (699)
95 TIGR02441 fa_ox_alpha_mit fatt 98.5 4.2E-06 9E-11 80.9 14.4 39 14-52 335-373 (737)
96 TIGR02437 FadB fatty oxidation 98.4 6.4E-06 1.4E-10 79.4 15.3 144 14-170 313-529 (714)
97 KOG2711 Glycerol-3-phosphate d 98.4 3.6E-06 7.9E-11 72.3 10.3 114 128-253 236-366 (372)
98 PRK11154 fadJ multifunctional 98.4 1.2E-05 2.7E-10 77.6 14.9 39 14-52 309-348 (708)
99 cd01075 NAD_bind_Leu_Phe_Val_D 98.4 2.9E-06 6.2E-11 69.3 9.1 48 14-61 28-76 (200)
100 PRK13403 ketol-acid reductoiso 98.3 1.9E-06 4.2E-11 74.4 6.7 56 14-70 16-71 (335)
101 KOG2380 Prephenate dehydrogena 98.3 9.8E-06 2.1E-10 69.7 10.4 109 14-124 52-219 (480)
102 KOG2304 3-hydroxyacyl-CoA dehy 98.3 2.9E-05 6.2E-10 63.3 12.5 40 14-53 11-50 (298)
103 PF10727 Rossmann-like: Rossma 98.2 7.3E-07 1.6E-11 67.2 2.8 43 13-55 9-52 (127)
104 PRK08818 prephenate dehydrogen 98.2 6E-05 1.3E-09 67.0 14.8 114 14-127 4-157 (370)
105 COG4007 Predicted dehydrogenas 98.1 0.00026 5.6E-09 58.9 15.6 152 14-166 1-236 (340)
106 PF01408 GFO_IDH_MocA: Oxidore 98.1 8.1E-05 1.8E-09 55.2 11.5 56 15-70 1-60 (120)
107 PRK13304 L-aspartate dehydroge 98.0 3.3E-05 7.1E-10 65.9 9.5 55 14-68 1-59 (265)
108 TIGR00745 apbA_panE 2-dehydrop 98.0 0.00019 4.1E-09 61.8 13.6 116 105-234 146-290 (293)
109 PRK13302 putative L-aspartate 98.0 2E-05 4.4E-10 67.3 6.6 55 14-68 6-65 (271)
110 PRK12480 D-lactate dehydrogena 97.9 2.5E-05 5.4E-10 68.7 6.8 64 13-84 145-208 (330)
111 KOG2305 3-hydroxyacyl-CoA dehy 97.9 0.0002 4.4E-09 58.5 11.0 150 15-172 4-225 (313)
112 PRK06444 prephenate dehydrogen 97.9 0.0012 2.6E-08 53.7 15.6 105 15-126 1-122 (197)
113 PF02826 2-Hacid_dh_C: D-isome 97.8 6.4E-05 1.4E-09 60.2 7.4 69 13-86 35-103 (178)
114 PRK07574 formate dehydrogenase 97.8 3.6E-05 7.9E-10 68.8 6.2 69 13-85 191-259 (385)
115 PLN03139 formate dehydrogenase 97.8 3.8E-05 8.3E-10 68.6 6.3 69 13-85 198-266 (386)
116 PF07991 IlvN: Acetohydroxy ac 97.8 6.7E-05 1.4E-09 58.4 6.3 56 14-70 4-60 (165)
117 cd01065 NAD_bind_Shikimate_DH 97.8 7.7E-05 1.7E-09 58.0 6.4 43 14-56 19-62 (155)
118 PRK06141 ornithine cyclodeamin 97.7 6.6E-05 1.4E-09 65.6 6.4 56 13-68 124-187 (314)
119 COG1712 Predicted dinucleotide 97.7 0.00058 1.3E-08 55.8 11.3 56 15-70 1-60 (255)
120 PF01488 Shikimate_DH: Shikima 97.7 9.7E-05 2.1E-09 56.4 6.3 43 14-56 12-55 (135)
121 PF02558 ApbA: Ketopantoate re 97.7 5.1E-05 1.1E-09 58.8 4.8 45 17-62 1-45 (151)
122 COG0569 TrkA K+ transport syst 97.7 7.6E-05 1.7E-09 62.0 5.6 41 15-55 1-41 (225)
123 PRK13301 putative L-aspartate 97.7 0.0005 1.1E-08 58.0 10.4 54 14-68 2-59 (267)
124 PF00393 6PGD: 6-phosphoglucon 97.7 0.00046 1E-08 59.0 10.1 95 129-228 1-106 (291)
125 PRK13243 glyoxylate reductase; 97.6 0.00016 3.4E-09 63.7 6.8 67 13-85 149-215 (333)
126 TIGR02853 spore_dpaA dipicolin 97.6 0.00016 3.4E-09 62.4 6.5 68 14-83 151-218 (287)
127 COG1748 LYS9 Saccharopine dehy 97.6 0.00023 5E-09 63.4 7.4 43 14-56 1-44 (389)
128 PRK08605 D-lactate dehydrogena 97.5 0.00019 4.2E-09 63.1 6.3 66 13-85 145-211 (332)
129 PRK06436 glycerate dehydrogena 97.4 0.00036 7.8E-09 60.6 6.3 62 14-85 122-184 (303)
130 PRK15469 ghrA bifunctional gly 97.4 0.0002 4.4E-09 62.5 4.7 36 14-49 136-171 (312)
131 PRK04148 hypothetical protein; 97.4 0.00047 1E-08 52.3 5.9 44 14-58 17-60 (134)
132 PRK06223 malate dehydrogenase; 97.4 0.00033 7.2E-09 61.0 5.5 39 14-52 2-41 (307)
133 TIGR01327 PGDH D-3-phosphoglyc 97.3 0.00049 1.1E-08 64.4 6.9 56 14-70 138-193 (525)
134 PRK00257 erythronate-4-phospha 97.3 0.00046 9.9E-09 61.7 5.9 64 14-86 116-179 (381)
135 PRK14194 bifunctional 5,10-met 97.3 0.00038 8.3E-09 60.0 5.0 117 14-140 159-280 (301)
136 PRK13581 D-3-phosphoglycerate 97.3 0.00061 1.3E-08 63.7 6.7 56 13-70 139-194 (526)
137 COG0111 SerA Phosphoglycerate 97.2 0.00065 1.4E-08 59.5 6.1 68 14-86 142-209 (324)
138 PF00056 Ldh_1_N: lactate/mala 97.2 0.00086 1.9E-08 51.6 6.1 39 15-53 1-42 (141)
139 COG1052 LdhA Lactate dehydroge 97.2 0.0011 2.5E-08 57.9 7.3 68 13-86 145-212 (324)
140 PRK08306 dipicolinate synthase 97.2 0.00097 2.1E-08 57.8 6.6 48 14-61 152-199 (296)
141 cd05213 NAD_bind_Glutamyl_tRNA 97.2 0.00074 1.6E-08 58.9 5.7 45 14-58 178-224 (311)
142 TIGR02371 ala_DH_arch alanine 97.2 0.0011 2.4E-08 58.2 6.7 86 13-103 127-224 (325)
143 PLN02928 oxidoreductase family 97.1 0.0011 2.3E-08 58.8 6.5 34 14-47 159-192 (347)
144 TIGR00507 aroE shikimate 5-deh 97.1 0.001 2.2E-08 56.9 6.1 43 14-56 117-159 (270)
145 cd05291 HicDH_like L-2-hydroxy 97.1 0.00075 1.6E-08 58.8 5.4 40 15-54 1-42 (306)
146 cd05292 LDH_2 A subgroup of L- 97.1 0.00068 1.5E-08 59.1 5.1 38 15-52 1-40 (308)
147 TIGR00873 gnd 6-phosphoglucona 97.1 0.012 2.6E-07 54.2 13.4 129 104-236 278-430 (467)
148 TIGR01763 MalateDH_bact malate 97.1 0.00071 1.5E-08 58.9 5.0 37 15-51 2-39 (305)
149 PLN00203 glutamyl-tRNA reducta 97.1 0.00096 2.1E-08 62.0 5.7 43 14-56 266-309 (519)
150 PF00670 AdoHcyase_NAD: S-aden 97.1 0.0015 3.2E-08 51.1 5.8 54 14-68 23-76 (162)
151 PRK14188 bifunctional 5,10-met 97.0 0.0014 3.1E-08 56.5 6.0 73 14-86 158-233 (296)
152 PRK00683 murD UDP-N-acetylmura 97.0 0.0032 6.9E-08 57.2 8.3 35 15-49 4-38 (418)
153 PRK00066 ldh L-lactate dehydro 97.0 0.0015 3.2E-08 57.1 5.9 44 10-53 2-47 (315)
154 TIGR01035 hemA glutamyl-tRNA r 97.0 0.0015 3.2E-08 59.4 6.1 43 14-56 180-223 (417)
155 COG2910 Putative NADH-flavin r 97.0 0.0011 2.4E-08 52.6 4.3 39 15-53 1-40 (211)
156 cd01483 E1_enzyme_family Super 97.0 0.0065 1.4E-07 46.6 8.7 111 16-126 1-123 (143)
157 PF10728 DUF2520: Domain of un 96.9 0.033 7.2E-07 42.3 12.1 126 97-233 3-129 (132)
158 PRK09287 6-phosphogluconate de 96.9 0.021 4.7E-07 52.4 13.0 145 104-256 271-438 (459)
159 PRK11790 D-3-phosphoglycerate 96.9 0.0018 3.9E-08 58.7 5.9 64 14-85 151-214 (409)
160 PF02153 PDH: Prephenate dehyd 96.9 0.015 3.3E-07 49.3 11.3 97 29-125 1-158 (258)
161 PF02254 TrkA_N: TrkA-N domain 96.9 0.003 6.6E-08 46.4 6.2 44 17-60 1-44 (116)
162 PRK15438 erythronate-4-phospha 96.9 0.0013 2.8E-08 58.7 4.9 65 13-86 115-179 (378)
163 PRK00048 dihydrodipicolinate r 96.9 0.0022 4.7E-08 54.4 6.0 55 14-68 1-58 (257)
164 PTZ00075 Adenosylhomocysteinas 96.9 0.0029 6.2E-08 57.9 7.0 54 14-68 254-307 (476)
165 PRK00258 aroE shikimate 5-dehy 96.9 0.0023 5.1E-08 54.9 6.2 43 14-56 123-166 (278)
166 cd05297 GH4_alpha_glucosidase_ 96.9 0.0013 2.9E-08 59.8 4.7 40 15-54 1-46 (423)
167 PTZ00082 L-lactate dehydrogena 96.9 0.0017 3.6E-08 57.0 5.1 36 15-50 7-43 (321)
168 PRK00045 hemA glutamyl-tRNA re 96.8 0.0024 5.2E-08 58.2 6.1 43 14-56 182-225 (423)
169 PRK09496 trkA potassium transp 96.8 0.0024 5.2E-08 58.5 5.8 41 15-55 1-41 (453)
170 PRK05476 S-adenosyl-L-homocyst 96.8 0.0041 8.9E-08 56.4 7.1 54 14-68 212-265 (425)
171 PRK07340 ornithine cyclodeamin 96.8 0.0048 1E-07 53.7 7.2 85 13-103 124-219 (304)
172 TIGR00936 ahcY adenosylhomocys 96.8 0.004 8.6E-08 56.1 6.8 54 14-68 195-248 (406)
173 PRK13940 glutamyl-tRNA reducta 96.8 0.003 6.4E-08 57.3 6.0 43 14-56 181-224 (414)
174 COG5495 Uncharacterized conser 96.8 0.033 7.1E-07 45.9 11.3 151 11-162 7-206 (289)
175 TIGR01921 DAP-DH diaminopimela 96.8 0.013 2.7E-07 51.3 9.6 102 14-117 3-136 (324)
176 PRK08291 ectoine utilization p 96.8 0.004 8.8E-08 54.8 6.7 57 13-69 131-196 (330)
177 TIGR02354 thiF_fam2 thiamine b 96.7 0.0024 5.2E-08 52.1 4.7 33 14-46 21-54 (200)
178 PF01113 DapB_N: Dihydrodipico 96.7 0.0023 5.1E-08 48.0 4.3 56 15-70 1-67 (124)
179 cd05293 LDH_1 A subgroup of L- 96.7 0.0033 7.2E-08 54.9 5.8 39 13-51 2-42 (312)
180 COG0673 MviM Predicted dehydro 96.7 0.0055 1.2E-07 53.8 7.2 106 14-119 3-147 (342)
181 PRK12549 shikimate 5-dehydroge 96.7 0.0036 7.7E-08 53.9 5.9 42 14-55 127-169 (284)
182 COG0373 HemA Glutamyl-tRNA red 96.7 0.0032 7E-08 56.6 5.7 45 14-58 178-224 (414)
183 TIGR01809 Shik-DH-AROM shikima 96.7 0.004 8.7E-08 53.6 6.1 43 14-56 125-168 (282)
184 PLN02494 adenosylhomocysteinas 96.7 0.0052 1.1E-07 56.1 7.0 54 14-68 254-307 (477)
185 PRK02318 mannitol-1-phosphate 96.7 0.0031 6.8E-08 56.6 5.5 44 15-58 1-45 (381)
186 PLN02602 lactate dehydrogenase 96.7 0.0043 9.3E-08 55.0 6.3 38 15-52 38-77 (350)
187 PRK03369 murD UDP-N-acetylmura 96.7 0.026 5.6E-07 52.4 11.6 46 15-60 13-58 (488)
188 cd01080 NAD_bind_m-THF_DH_Cycl 96.7 0.028 6E-07 44.5 10.2 115 14-139 44-164 (168)
189 PRK03659 glutathione-regulated 96.7 0.029 6.3E-07 53.5 12.2 47 14-60 400-446 (601)
190 TIGR02992 ectoine_eutC ectoine 96.6 0.006 1.3E-07 53.6 7.0 55 14-68 129-192 (326)
191 cd05191 NAD_bind_amino_acid_DH 96.6 0.0043 9.3E-08 43.3 4.9 32 14-45 23-55 (86)
192 PRK15409 bifunctional glyoxyla 96.6 0.0053 1.1E-07 53.9 6.5 68 13-86 144-212 (323)
193 PRK02472 murD UDP-N-acetylmura 96.6 0.017 3.6E-07 52.9 10.1 111 14-127 5-144 (447)
194 cd01078 NAD_bind_H4MPT_DH NADP 96.6 0.0056 1.2E-07 49.5 6.2 42 14-55 28-70 (194)
195 PTZ00117 malate dehydrogenase; 96.6 0.003 6.5E-08 55.3 4.8 38 14-51 5-43 (319)
196 PRK01710 murD UDP-N-acetylmura 96.6 0.027 5.8E-07 51.9 11.0 47 14-60 14-65 (458)
197 PRK06407 ornithine cyclodeamin 96.6 0.0065 1.4E-07 52.8 6.6 58 13-70 116-182 (301)
198 PRK09310 aroDE bifunctional 3- 96.6 0.005 1.1E-07 56.9 6.2 43 14-56 332-374 (477)
199 cd01339 LDH-like_MDH L-lactate 96.5 0.0036 7.9E-08 54.3 4.7 35 17-51 1-36 (300)
200 PRK10669 putative cation:proto 96.5 0.0052 1.1E-07 58.0 6.1 46 15-60 418-463 (558)
201 cd00401 AdoHcyase S-adenosyl-L 96.5 0.008 1.7E-07 54.4 7.0 48 14-61 202-249 (413)
202 COG0771 MurD UDP-N-acetylmuram 96.5 0.017 3.7E-07 52.6 8.9 36 14-49 7-42 (448)
203 CHL00194 ycf39 Ycf39; Provisio 96.4 0.0066 1.4E-07 52.9 6.0 45 15-59 1-46 (317)
204 PRK13303 L-aspartate dehydroge 96.4 0.0079 1.7E-07 51.3 6.2 54 14-67 1-58 (265)
205 PTZ00142 6-phosphogluconate de 96.4 0.12 2.6E-06 47.8 14.2 105 127-235 316-435 (470)
206 PRK06046 alanine dehydrogenase 96.4 0.01 2.3E-07 52.1 6.9 86 13-103 128-225 (326)
207 PRK06823 ornithine cyclodeamin 96.4 0.0089 1.9E-07 52.2 6.4 87 13-104 127-225 (315)
208 PRK12409 D-amino acid dehydrog 96.4 0.0047 1E-07 55.8 4.8 33 15-47 2-34 (410)
209 PF03435 Saccharop_dh: Sacchar 96.4 0.0071 1.5E-07 54.3 5.9 39 17-55 1-41 (386)
210 COG0059 IlvC Ketol-acid reduct 96.4 0.0086 1.9E-07 51.2 5.9 56 14-70 18-74 (338)
211 TIGR03215 ac_ald_DH_ac acetald 96.4 0.02 4.3E-07 49.2 8.2 56 15-70 2-62 (285)
212 PRK08300 acetaldehyde dehydrog 96.3 0.033 7.2E-07 48.2 9.2 56 14-69 4-64 (302)
213 TIGR00518 alaDH alanine dehydr 96.3 0.0088 1.9E-07 53.5 5.7 42 15-56 168-209 (370)
214 PF00070 Pyr_redox: Pyridine n 96.2 0.01 2.2E-07 40.6 4.8 59 16-81 1-59 (80)
215 PRK06199 ornithine cyclodeamin 96.2 0.013 2.8E-07 52.5 6.6 58 13-70 154-223 (379)
216 PRK07060 short chain dehydroge 96.2 0.016 3.5E-07 48.0 6.8 43 14-56 9-52 (245)
217 PRK05225 ketol-acid reductoiso 96.2 0.0046 9.9E-08 56.0 3.6 56 14-70 36-97 (487)
218 PRK07589 ornithine cyclodeamin 96.2 0.015 3.2E-07 51.5 6.8 58 13-70 128-193 (346)
219 COG0169 AroE Shikimate 5-dehyd 96.2 0.013 2.8E-07 50.3 6.2 43 14-56 126-169 (283)
220 PRK07236 hypothetical protein; 96.2 0.0086 1.9E-07 53.7 5.3 35 14-48 6-40 (386)
221 PF13460 NAD_binding_10: NADH( 96.2 0.012 2.5E-07 46.8 5.5 36 17-52 1-37 (183)
222 PRK06719 precorrin-2 dehydroge 96.2 0.0083 1.8E-07 47.0 4.5 35 12-46 11-45 (157)
223 PF00899 ThiF: ThiF family; I 96.1 0.0088 1.9E-07 45.4 4.5 110 15-124 3-124 (135)
224 cd01487 E1_ThiF_like E1_ThiF_l 96.1 0.0084 1.8E-07 47.8 4.5 32 16-47 1-33 (174)
225 PRK08618 ornithine cyclodeamin 96.1 0.016 3.5E-07 50.8 6.8 88 13-104 126-224 (325)
226 PRK00711 D-amino acid dehydrog 96.1 0.0076 1.6E-07 54.5 4.8 34 15-48 1-34 (416)
227 PRK08410 2-hydroxyacid dehydro 96.1 0.0084 1.8E-07 52.3 4.8 65 13-86 144-208 (311)
228 PRK07045 putative monooxygenas 96.1 0.0077 1.7E-07 54.0 4.7 38 11-48 2-39 (388)
229 PRK06753 hypothetical protein; 96.1 0.0078 1.7E-07 53.5 4.6 34 15-48 1-34 (373)
230 PF02423 OCD_Mu_crystall: Orni 96.1 0.011 2.5E-07 51.5 5.5 86 13-103 127-226 (313)
231 PRK07494 2-octaprenyl-6-methox 96.1 0.0097 2.1E-07 53.3 5.0 38 10-47 3-40 (388)
232 PRK08163 salicylate hydroxylas 96.0 0.0093 2E-07 53.5 4.9 35 14-48 4-38 (396)
233 PRK14179 bifunctional 5,10-met 96.0 0.0098 2.1E-07 51.0 4.7 71 14-85 158-232 (284)
234 PF13450 NAD_binding_8: NAD(P) 96.0 0.011 2.4E-07 39.3 4.1 30 19-48 1-30 (68)
235 PRK11579 putative oxidoreducta 96.0 0.03 6.5E-07 49.6 8.0 104 14-119 4-144 (346)
236 PRK09496 trkA potassium transp 96.0 0.015 3.3E-07 53.2 6.2 43 14-56 231-273 (453)
237 PRK04308 murD UDP-N-acetylmura 96.0 0.06 1.3E-06 49.3 10.0 114 14-128 5-147 (445)
238 PRK07523 gluconate 5-dehydroge 96.0 0.025 5.4E-07 47.4 6.9 41 14-54 10-51 (255)
239 PRK14106 murD UDP-N-acetylmura 96.0 0.019 4.2E-07 52.6 6.6 34 14-47 5-38 (450)
240 PLN00141 Tic62-NAD(P)-related 96.0 0.017 3.7E-07 48.5 5.8 42 13-54 16-58 (251)
241 PRK06487 glycerate dehydrogena 95.9 0.01 2.3E-07 51.9 4.6 62 14-86 148-209 (317)
242 cd05290 LDH_3 A subgroup of L- 95.9 0.011 2.3E-07 51.6 4.6 36 16-51 1-38 (307)
243 PF01494 FAD_binding_3: FAD bi 95.9 0.011 2.3E-07 51.7 4.5 35 15-49 2-36 (356)
244 TIGR01470 cysG_Nterm siroheme 95.9 0.12 2.7E-06 42.2 10.5 42 14-55 9-51 (205)
245 PRK05868 hypothetical protein; 95.9 0.011 2.4E-07 52.9 4.5 35 14-48 1-35 (372)
246 PRK14027 quinate/shikimate deh 95.9 0.021 4.6E-07 49.1 6.1 43 14-56 127-170 (283)
247 PRK00141 murD UDP-N-acetylmura 95.9 0.021 4.7E-07 52.8 6.5 47 14-60 15-62 (473)
248 PRK06718 precorrin-2 dehydroge 95.8 0.022 4.8E-07 46.5 5.6 35 13-47 9-43 (202)
249 PRK03562 glutathione-regulated 95.8 0.02 4.3E-07 54.8 6.1 47 14-60 400-446 (621)
250 PLN02306 hydroxypyruvate reduc 95.8 0.014 3E-07 52.4 4.7 36 13-48 164-200 (386)
251 PRK08644 thiamine biosynthesis 95.8 0.017 3.6E-07 47.6 4.8 41 14-54 28-69 (212)
252 PF07479 NAD_Gly3P_dh_C: NAD-d 95.7 0.022 4.8E-07 44.1 5.2 101 127-232 21-137 (149)
253 cd00300 LDH_like L-lactate deh 95.7 0.015 3.3E-07 50.5 4.7 38 17-54 1-40 (300)
254 KOG0399 Glutamate synthase [Am 95.7 0.026 5.6E-07 56.2 6.5 70 13-83 1784-1856(2142)
255 PRK06847 hypothetical protein; 95.7 0.016 3.5E-07 51.5 4.9 35 14-48 4-38 (375)
256 PRK05653 fabG 3-ketoacyl-(acyl 95.7 0.033 7.1E-07 46.0 6.4 41 14-54 5-46 (246)
257 PRK07538 hypothetical protein; 95.7 0.014 3.1E-07 52.8 4.5 34 15-48 1-34 (413)
258 PRK06932 glycerate dehydrogena 95.6 0.015 3.3E-07 50.8 4.4 63 14-86 147-209 (314)
259 cd01492 Aos1_SUMO Ubiquitin ac 95.6 0.078 1.7E-06 43.1 8.2 111 14-124 21-142 (197)
260 PRK07588 hypothetical protein; 95.6 0.015 3.4E-07 52.1 4.4 34 15-48 1-34 (391)
261 PRK08017 oxidoreductase; Provi 95.6 0.035 7.5E-07 46.4 6.3 44 15-58 3-47 (256)
262 PRK07364 2-octaprenyl-6-methox 95.6 0.021 4.6E-07 51.5 5.3 35 14-48 18-52 (415)
263 PLN02819 lysine-ketoglutarate 95.6 0.061 1.3E-06 54.0 8.8 56 14-69 569-644 (1042)
264 PRK06349 homoserine dehydrogen 95.6 0.028 6.1E-07 51.3 5.9 56 14-69 3-69 (426)
265 PRK08020 ubiF 2-octaprenyl-3-m 95.5 0.018 3.8E-07 51.6 4.6 35 13-47 4-38 (391)
266 TIGR02356 adenyl_thiF thiazole 95.5 0.023 5.1E-07 46.4 4.8 41 14-54 21-62 (202)
267 TIGR03219 salicylate_mono sali 95.5 0.018 3.9E-07 52.2 4.4 34 15-48 1-35 (414)
268 cd00650 LDH_MDH_like NAD-depen 95.5 0.019 4E-07 48.9 4.3 37 17-53 1-42 (263)
269 TIGR00036 dapB dihydrodipicoli 95.5 0.21 4.6E-06 42.6 10.7 32 15-46 2-36 (266)
270 PRK01390 murD UDP-N-acetylmura 95.5 0.031 6.8E-07 51.4 6.0 45 14-58 9-53 (460)
271 PRK06126 hypothetical protein; 95.5 0.022 4.9E-07 53.5 5.1 38 11-48 4-41 (545)
272 PLN02172 flavin-containing mon 95.4 0.027 6E-07 51.9 5.5 34 14-47 10-43 (461)
273 PRK07231 fabG 3-ketoacyl-(acyl 95.4 0.046 1E-06 45.4 6.5 41 14-54 5-46 (251)
274 PRK07326 short chain dehydroge 95.4 0.047 1E-06 45.0 6.4 40 15-54 7-47 (237)
275 PRK05884 short chain dehydroge 95.4 0.038 8.2E-07 45.6 5.8 41 15-55 1-42 (223)
276 PRK12475 thiamine/molybdopteri 95.4 0.024 5.2E-07 50.1 4.8 34 14-47 24-58 (338)
277 PRK12550 shikimate 5-dehydroge 95.4 0.036 7.7E-07 47.4 5.7 42 15-56 123-165 (272)
278 PRK12548 shikimate 5-dehydroge 95.4 0.039 8.4E-07 47.7 6.0 42 14-55 126-171 (289)
279 PRK08773 2-octaprenyl-3-methyl 95.4 0.024 5.2E-07 50.9 4.9 34 14-47 6-39 (392)
280 COG0654 UbiH 2-polyprenyl-6-me 95.4 0.019 4.1E-07 51.6 4.2 33 14-46 2-34 (387)
281 PRK12809 putative oxidoreducta 95.4 0.049 1.1E-06 52.4 7.1 35 13-47 309-343 (639)
282 KOG1399 Flavin-containing mono 95.3 0.024 5.1E-07 51.9 4.5 35 14-48 6-40 (448)
283 PRK01438 murD UDP-N-acetylmura 95.3 0.043 9.4E-07 50.8 6.4 47 14-60 16-67 (480)
284 PF01266 DAO: FAD dependent ox 95.3 0.028 6.1E-07 49.0 4.9 31 16-46 1-31 (358)
285 PLN00093 geranylgeranyl diphos 95.3 0.03 6.6E-07 51.4 5.2 35 14-48 39-73 (450)
286 KOG0069 Glyoxylate/hydroxypyru 95.3 0.041 9E-07 48.2 5.7 68 13-85 161-228 (336)
287 PF01262 AlaDh_PNT_C: Alanine 95.3 0.062 1.3E-06 42.4 6.4 45 14-58 20-64 (168)
288 TIGR01318 gltD_gamma_fam gluta 95.3 0.071 1.5E-06 49.2 7.6 35 13-47 140-174 (467)
289 PTZ00325 malate dehydrogenase; 95.2 0.036 7.8E-07 48.6 5.4 34 13-46 7-43 (321)
290 PRK10538 malonic semialdehyde 95.2 0.048 1E-06 45.5 6.0 41 15-55 1-42 (248)
291 PRK07102 short chain dehydroge 95.2 0.051 1.1E-06 45.1 6.0 40 15-54 2-42 (243)
292 PRK05866 short chain dehydroge 95.2 0.072 1.6E-06 45.9 7.0 41 15-55 41-82 (293)
293 PRK10206 putative oxidoreducta 95.2 0.049 1.1E-06 48.2 6.1 103 15-119 2-144 (344)
294 PRK05993 short chain dehydroge 95.2 0.062 1.3E-06 45.7 6.6 44 15-58 5-49 (277)
295 PF00743 FMO-like: Flavin-bind 95.2 0.025 5.4E-07 53.1 4.4 35 15-49 2-36 (531)
296 PLN02520 bifunctional 3-dehydr 95.1 0.046 1E-06 51.3 6.1 43 14-56 379-421 (529)
297 PRK03803 murD UDP-N-acetylmura 95.1 0.16 3.4E-06 46.6 9.4 46 15-60 7-56 (448)
298 PRK00421 murC UDP-N-acetylmura 95.1 0.054 1.2E-06 49.9 6.3 45 14-58 7-53 (461)
299 cd00757 ThiF_MoeB_HesA_family 95.1 0.037 8.1E-07 46.0 4.8 41 14-54 21-62 (228)
300 TIGR02355 moeB molybdopterin s 95.1 0.12 2.5E-06 43.4 7.8 43 14-56 24-67 (240)
301 PRK06124 gluconate 5-dehydroge 95.1 0.086 1.9E-06 44.1 7.0 44 11-54 8-52 (256)
302 PRK12779 putative bifunctional 95.1 0.05 1.1E-06 54.5 6.3 35 13-47 305-339 (944)
303 PRK04207 glyceraldehyde-3-phos 95.1 0.098 2.1E-06 46.3 7.6 41 14-54 1-43 (341)
304 COG0665 DadA Glycine/D-amino a 95.1 0.035 7.7E-07 49.4 4.9 35 14-48 4-38 (387)
305 PRK07688 thiamine/molybdopteri 95.1 0.035 7.5E-07 49.1 4.7 41 14-54 24-65 (339)
306 PLN02427 UDP-apiose/xylose syn 95.0 0.058 1.3E-06 48.3 6.3 42 13-54 13-56 (386)
307 TIGR01761 thiaz-red thiazoliny 95.0 0.074 1.6E-06 47.0 6.7 56 14-70 3-62 (343)
308 COG0039 Mdh Malate/lactate deh 95.0 0.028 6E-07 48.8 3.9 36 15-50 1-38 (313)
309 PRK07454 short chain dehydroge 95.0 0.077 1.7E-06 43.9 6.6 40 15-54 7-47 (241)
310 cd05294 LDH-like_MDH_nadp A la 95.0 0.032 6.9E-07 48.7 4.4 33 15-47 1-36 (309)
311 cd05211 NAD_bind_Glu_Leu_Phe_V 95.0 0.069 1.5E-06 44.1 6.1 34 14-47 23-57 (217)
312 PRK09072 short chain dehydroge 95.0 0.076 1.6E-06 44.7 6.6 42 14-55 5-47 (263)
313 PRK08013 oxidoreductase; Provi 95.0 0.033 7.3E-07 50.2 4.6 34 15-48 4-37 (400)
314 TIGR01988 Ubi-OHases Ubiquinon 95.0 0.029 6.2E-07 49.9 4.2 33 16-48 1-33 (385)
315 PRK06475 salicylate hydroxylas 95.0 0.029 6.3E-07 50.6 4.2 34 15-48 3-36 (400)
316 PRK12769 putative oxidoreducta 95.0 0.07 1.5E-06 51.4 7.0 35 13-47 326-360 (654)
317 cd01485 E1-1_like Ubiquitin ac 95.0 0.041 8.8E-07 44.8 4.6 40 14-53 19-59 (198)
318 PRK08849 2-octaprenyl-3-methyl 95.0 0.038 8.1E-07 49.5 4.8 33 15-47 4-36 (384)
319 COG2423 Predicted ornithine cy 94.9 0.089 1.9E-06 46.2 6.8 58 13-70 129-195 (330)
320 PRK08328 hypothetical protein; 94.9 0.043 9.4E-07 45.8 4.7 43 14-56 27-70 (231)
321 PRK05732 2-octaprenyl-6-methox 94.9 0.038 8.3E-07 49.4 4.8 33 14-46 3-38 (395)
322 PRK09424 pntA NAD(P) transhydr 94.9 0.063 1.4E-06 49.9 6.2 46 14-59 165-210 (509)
323 TIGR02360 pbenz_hydroxyl 4-hyd 94.9 0.038 8.2E-07 49.7 4.7 34 15-48 3-36 (390)
324 PRK05690 molybdopterin biosynt 94.9 0.16 3.5E-06 42.7 8.2 41 14-54 32-73 (245)
325 PRK07814 short chain dehydroge 94.9 0.096 2.1E-06 44.1 6.9 41 14-54 10-51 (263)
326 PRK12749 quinate/shikimate deh 94.9 0.075 1.6E-06 45.9 6.2 42 14-55 124-169 (288)
327 PRK06617 2-octaprenyl-6-methox 94.9 0.035 7.6E-07 49.6 4.4 32 15-46 2-33 (374)
328 cd01489 Uba2_SUMO Ubiquitin ac 94.9 0.17 3.8E-06 44.1 8.5 41 16-56 1-42 (312)
329 PRK06185 hypothetical protein; 94.9 0.04 8.6E-07 49.6 4.8 34 14-47 6-39 (407)
330 PLN02896 cinnamyl-alcohol dehy 94.9 0.088 1.9E-06 46.5 6.8 42 12-53 8-50 (353)
331 cd01484 E1-2_like Ubiquitin ac 94.8 0.18 3.9E-06 42.2 8.2 40 16-55 1-41 (234)
332 PLN02985 squalene monooxygenas 94.8 0.047 1E-06 51.1 5.2 34 14-47 43-76 (514)
333 cd01076 NAD_bind_1_Glu_DH NAD( 94.8 0.082 1.8E-06 44.0 6.1 32 14-45 31-63 (227)
334 PRK15076 alpha-galactosidase; 94.8 0.038 8.2E-07 50.5 4.4 38 15-52 2-45 (431)
335 PRK11908 NAD-dependent epimera 94.8 0.059 1.3E-06 47.5 5.5 41 14-54 1-43 (347)
336 TIGR01373 soxB sarcosine oxida 94.8 0.05 1.1E-06 49.0 5.2 34 14-47 30-65 (407)
337 PRK11259 solA N-methyltryptoph 94.8 0.044 9.6E-07 48.7 4.7 33 15-47 4-36 (376)
338 TIGR03325 BphB_TodD cis-2,3-di 94.8 0.092 2E-06 44.2 6.4 43 14-56 5-48 (262)
339 PF05368 NmrA: NmrA-like famil 94.7 0.073 1.6E-06 44.0 5.7 44 17-60 1-47 (233)
340 cd01337 MDH_glyoxysomal_mitoch 94.7 0.049 1.1E-06 47.5 4.7 32 15-46 1-35 (310)
341 PRK11728 hydroxyglutarate oxid 94.7 0.042 9.1E-07 49.4 4.5 33 15-47 3-37 (393)
342 PLN02927 antheraxanthin epoxid 94.7 0.054 1.2E-06 52.0 5.3 34 14-47 81-114 (668)
343 PRK07825 short chain dehydroge 94.7 0.1 2.2E-06 44.2 6.6 42 14-55 5-47 (273)
344 PRK06182 short chain dehydroge 94.7 0.1 2.2E-06 44.2 6.6 45 14-58 3-48 (273)
345 PLN02214 cinnamoyl-CoA reducta 94.7 0.074 1.6E-06 46.9 5.8 37 13-49 9-46 (342)
346 TIGR01984 UbiH 2-polyprenyl-6- 94.6 0.038 8.3E-07 49.2 4.0 33 16-48 1-34 (382)
347 TIGR01316 gltA glutamate synth 94.6 0.074 1.6E-06 48.9 5.9 35 13-47 132-166 (449)
348 PRK08217 fabG 3-ketoacyl-(acyl 94.6 0.11 2.4E-06 43.1 6.6 41 14-54 5-46 (253)
349 PRK12826 3-ketoacyl-(acyl-carr 94.6 0.091 2E-06 43.5 6.0 39 15-53 7-46 (251)
350 TIGR03736 PRTRC_ThiF PRTRC sys 94.6 0.061 1.3E-06 45.2 4.8 44 13-56 10-64 (244)
351 PRK14982 acyl-ACP reductase; P 94.6 0.075 1.6E-06 46.9 5.6 44 13-56 154-200 (340)
352 PRK07774 short chain dehydroge 94.6 0.11 2.4E-06 43.2 6.5 40 14-53 6-46 (250)
353 TIGR01377 soxA_mon sarcosine o 94.6 0.047 1E-06 48.6 4.4 31 16-46 2-32 (380)
354 cd05311 NAD_bind_2_malic_enz N 94.6 0.06 1.3E-06 44.8 4.7 33 14-46 25-60 (226)
355 PRK08309 short chain dehydroge 94.6 0.11 2.3E-06 41.5 6.0 40 15-54 1-40 (177)
356 PRK08223 hypothetical protein; 94.6 0.15 3.4E-06 43.8 7.3 43 14-56 27-70 (287)
357 PRK08243 4-hydroxybenzoate 3-m 94.5 0.051 1.1E-06 48.8 4.6 34 15-48 3-36 (392)
358 PRK01747 mnmC bifunctional tRN 94.5 0.045 9.9E-07 52.8 4.5 33 15-47 261-293 (662)
359 PRK10157 putative oxidoreducta 94.5 0.057 1.2E-06 49.3 4.9 35 14-48 5-39 (428)
360 PRK06567 putative bifunctional 94.5 0.072 1.6E-06 53.0 5.8 34 13-46 382-415 (1028)
361 PLN02650 dihydroflavonol-4-red 94.5 0.081 1.7E-06 46.7 5.7 42 11-52 2-44 (351)
362 PRK06953 short chain dehydroge 94.5 0.1 2.3E-06 42.7 6.0 43 16-58 3-46 (222)
363 PRK12810 gltD glutamate syntha 94.4 0.076 1.7E-06 49.1 5.6 35 13-47 142-176 (471)
364 PRK08265 short chain dehydroge 94.4 0.12 2.7E-06 43.5 6.5 42 14-55 6-48 (261)
365 PRK05714 2-octaprenyl-3-methyl 94.4 0.045 9.8E-07 49.3 4.0 33 15-47 3-35 (405)
366 cd00755 YgdL_like Family of ac 94.4 0.067 1.4E-06 44.6 4.7 41 14-54 11-52 (231)
367 PRK08703 short chain dehydroge 94.4 0.13 2.9E-06 42.5 6.5 40 15-54 7-47 (239)
368 PRK05786 fabG 3-ketoacyl-(acyl 94.4 0.13 2.8E-06 42.4 6.5 40 14-53 5-45 (238)
369 PRK08339 short chain dehydroge 94.4 0.14 3.1E-06 43.2 6.8 40 15-54 9-49 (263)
370 COG0493 GltD NADPH-dependent g 94.4 0.078 1.7E-06 48.7 5.4 38 11-48 120-157 (457)
371 TIGR02028 ChlP geranylgeranyl 94.4 0.054 1.2E-06 48.9 4.4 34 15-48 1-34 (398)
372 TIGR03364 HpnW_proposed FAD de 94.4 0.058 1.2E-06 47.8 4.5 32 16-47 2-33 (365)
373 PRK08267 short chain dehydroge 94.4 0.11 2.4E-06 43.5 6.0 41 15-55 2-43 (260)
374 TIGR03466 HpnA hopanoid-associ 94.3 0.05 1.1E-06 47.1 4.0 39 15-53 1-40 (328)
375 PRK00676 hemA glutamyl-tRNA re 94.3 0.071 1.5E-06 46.9 4.8 35 14-48 174-209 (338)
376 PRK06180 short chain dehydroge 94.3 0.12 2.6E-06 44.0 6.2 42 15-56 5-47 (277)
377 PRK07190 hypothetical protein; 94.3 0.066 1.4E-06 49.7 4.9 37 12-48 3-39 (487)
378 PRK06101 short chain dehydroge 94.3 0.12 2.5E-06 43.0 6.0 41 16-56 3-44 (240)
379 PRK08862 short chain dehydroge 94.3 0.13 2.8E-06 42.6 6.2 41 14-54 5-46 (227)
380 PRK05565 fabG 3-ketoacyl-(acyl 94.3 0.14 2.9E-06 42.4 6.4 41 14-54 5-47 (247)
381 PLN02695 GDP-D-mannose-3',5'-e 94.3 0.092 2E-06 46.9 5.6 35 13-47 20-55 (370)
382 PRK08340 glucose-1-dehydrogena 94.3 0.11 2.4E-06 43.6 5.9 40 15-54 1-41 (259)
383 PRK09288 purT phosphoribosylgl 94.3 0.1 2.2E-06 46.9 5.9 42 7-48 5-46 (395)
384 PLN02463 lycopene beta cyclase 94.3 0.096 2.1E-06 48.1 5.8 35 14-48 28-62 (447)
385 PRK07608 ubiquinone biosynthes 94.3 0.063 1.4E-06 47.9 4.6 34 15-48 6-39 (388)
386 PRK12831 putative oxidoreducta 94.3 0.091 2E-06 48.5 5.7 35 13-47 139-173 (464)
387 PRK09126 hypothetical protein; 94.3 0.063 1.4E-06 48.1 4.5 34 15-48 4-37 (392)
388 PRK12429 3-hydroxybutyrate deh 94.2 0.13 2.8E-06 42.9 6.1 40 15-54 5-45 (258)
389 PRK07109 short chain dehydroge 94.2 0.16 3.5E-06 44.7 7.0 40 15-54 9-49 (334)
390 PRK07067 sorbitol dehydrogenas 94.2 0.14 3.1E-06 42.8 6.4 41 15-55 7-48 (257)
391 PRK08177 short chain dehydroge 94.2 0.1 2.2E-06 42.8 5.4 41 15-55 2-43 (225)
392 PRK05335 tRNA (uracil-5-)-meth 94.2 0.072 1.6E-06 48.4 4.7 35 15-49 3-37 (436)
393 PRK12939 short chain dehydroge 94.2 0.14 3E-06 42.5 6.2 41 14-54 7-48 (250)
394 PRK07024 short chain dehydroge 94.2 0.14 3E-06 43.0 6.2 41 15-55 3-44 (257)
395 PRK06057 short chain dehydroge 94.1 0.14 3E-06 42.8 6.2 42 14-55 7-49 (255)
396 PLN02657 3,8-divinyl protochlo 94.1 0.12 2.5E-06 46.7 6.0 39 12-50 58-97 (390)
397 COG3380 Predicted NAD/FAD-depe 94.1 0.084 1.8E-06 44.8 4.6 41 15-55 2-42 (331)
398 PRK05867 short chain dehydroge 94.1 0.15 3.3E-06 42.6 6.4 41 14-54 9-50 (253)
399 KOG0068 D-3-phosphoglycerate d 94.1 0.19 4E-06 43.9 6.8 53 15-69 147-199 (406)
400 TIGR01772 MDH_euk_gproteo mala 94.1 0.07 1.5E-06 46.6 4.3 32 16-47 1-35 (312)
401 PRK12814 putative NADPH-depend 94.1 0.074 1.6E-06 51.3 4.9 36 13-48 192-227 (652)
402 PRK12828 short chain dehydroge 94.1 0.15 3.3E-06 41.8 6.3 39 14-52 7-46 (239)
403 PRK11101 glpA sn-glycerol-3-ph 94.1 0.085 1.8E-06 49.7 5.2 33 14-46 6-38 (546)
404 COG0300 DltE Short-chain dehyd 94.1 0.15 3.2E-06 43.4 6.1 42 15-56 7-49 (265)
405 PRK07097 gluconate 5-dehydroge 94.1 0.19 4.2E-06 42.3 6.9 41 14-54 10-51 (265)
406 PRK02705 murD UDP-N-acetylmura 94.0 0.069 1.5E-06 49.1 4.4 32 16-47 2-33 (459)
407 PRK06138 short chain dehydroge 94.0 0.16 3.5E-06 42.1 6.3 41 14-54 5-46 (252)
408 PRK02006 murD UDP-N-acetylmura 94.0 0.082 1.8E-06 49.2 4.9 33 15-47 8-40 (498)
409 PRK15116 sulfur acceptor prote 94.0 0.094 2E-06 44.7 4.8 41 14-54 30-71 (268)
410 TIGR01087 murD UDP-N-acetylmur 94.0 0.066 1.4E-06 48.8 4.2 33 16-48 1-33 (433)
411 PLN00016 RNA-binding protein; 94.0 0.075 1.6E-06 47.6 4.4 36 14-49 52-92 (378)
412 PRK12770 putative glutamate sy 94.0 0.11 2.4E-06 46.0 5.5 35 14-48 18-52 (352)
413 PRK06949 short chain dehydroge 94.0 0.16 3.5E-06 42.3 6.2 42 14-55 9-51 (258)
414 PRK05875 short chain dehydroge 94.0 0.17 3.8E-06 42.8 6.5 41 14-54 7-48 (276)
415 PRK05442 malate dehydrogenase; 94.0 0.084 1.8E-06 46.4 4.6 35 13-47 3-45 (326)
416 PTZ00367 squalene epoxidase; P 93.9 0.081 1.8E-06 50.1 4.8 34 14-47 33-66 (567)
417 KOG0022 Alcohol dehydrogenase, 93.9 0.15 3.2E-06 44.2 5.8 51 15-65 194-245 (375)
418 PRK07074 short chain dehydroge 93.9 0.16 3.6E-06 42.4 6.2 41 15-55 3-44 (257)
419 TIGR03649 ergot_EASG ergot alk 93.9 0.075 1.6E-06 45.4 4.1 36 16-51 1-37 (285)
420 PRK06184 hypothetical protein; 93.9 0.08 1.7E-06 49.3 4.6 35 14-48 3-37 (502)
421 PRK08850 2-octaprenyl-6-methox 93.9 0.081 1.8E-06 47.7 4.5 32 15-46 5-36 (405)
422 PRK13394 3-hydroxybutyrate deh 93.9 0.18 3.9E-06 42.2 6.3 41 14-54 7-48 (262)
423 PRK12775 putative trifunctiona 93.9 0.18 3.9E-06 51.0 7.3 35 13-47 429-463 (1006)
424 PLN03209 translocon at the inn 93.9 0.15 3.3E-06 48.0 6.3 40 15-54 81-121 (576)
425 PRK07890 short chain dehydroge 93.9 0.17 3.7E-06 42.2 6.2 41 14-54 5-46 (258)
426 PRK08264 short chain dehydroge 93.9 0.15 3.2E-06 42.1 5.7 39 14-52 6-46 (238)
427 PRK06935 2-deoxy-D-gluconate 3 93.8 0.17 3.7E-06 42.4 6.2 33 14-46 15-48 (258)
428 PRK06200 2,3-dihydroxy-2,3-dih 93.8 0.19 4.1E-06 42.3 6.4 42 15-56 7-49 (263)
429 COG0451 WcaG Nucleoside-diphos 93.8 0.072 1.6E-06 45.8 3.9 38 16-53 2-40 (314)
430 PRK07478 short chain dehydroge 93.8 0.18 3.9E-06 42.1 6.2 40 15-54 7-47 (254)
431 PRK06183 mhpA 3-(3-hydroxyphen 93.8 0.11 2.5E-06 48.7 5.5 35 14-48 10-44 (538)
432 COG1063 Tdh Threonine dehydrog 93.8 0.57 1.2E-05 41.5 9.7 94 16-126 171-271 (350)
433 PRK08085 gluconate 5-dehydroge 93.8 0.19 4E-06 42.0 6.3 41 14-54 9-50 (254)
434 TIGR00137 gid_trmFO tRNA:m(5)U 93.8 0.085 1.9E-06 48.0 4.4 33 16-48 2-34 (433)
435 PRK11749 dihydropyrimidine deh 93.8 0.12 2.6E-06 47.6 5.4 35 13-47 139-173 (457)
436 PRK08277 D-mannonate oxidoredu 93.8 0.18 4E-06 42.7 6.3 41 14-54 10-51 (278)
437 PRK06019 phosphoribosylaminoim 93.8 0.098 2.1E-06 46.8 4.8 35 14-48 2-36 (372)
438 PRK05854 short chain dehydroge 93.7 0.27 5.8E-06 42.8 7.4 40 15-54 15-55 (313)
439 COG1233 Phytoene dehydrogenase 93.7 0.097 2.1E-06 48.6 4.8 34 14-47 3-36 (487)
440 PRK05693 short chain dehydroge 93.7 0.2 4.3E-06 42.5 6.4 44 15-58 2-46 (274)
441 PLN00106 malate dehydrogenase 93.7 0.12 2.5E-06 45.4 5.0 34 14-47 18-54 (323)
442 smart00846 Gp_dh_N Glyceraldeh 93.7 0.18 3.9E-06 39.1 5.5 41 15-55 1-44 (149)
443 PRK08132 FAD-dependent oxidore 93.7 0.092 2E-06 49.4 4.6 35 14-48 23-57 (547)
444 PRK05717 oxidoreductase; Valid 93.7 0.26 5.6E-06 41.2 7.0 40 15-54 11-51 (255)
445 PLN02206 UDP-glucuronate decar 93.6 0.13 2.9E-06 47.1 5.5 36 11-46 116-152 (442)
446 PRK09186 flagellin modificatio 93.6 0.19 4.1E-06 41.9 6.1 39 15-53 5-44 (256)
447 PRK05872 short chain dehydroge 93.6 0.25 5.4E-06 42.5 7.0 42 14-55 9-51 (296)
448 PRK10675 UDP-galactose-4-epime 93.6 0.11 2.3E-06 45.4 4.7 32 15-46 1-33 (338)
449 PRK07576 short chain dehydroge 93.6 0.22 4.7E-06 42.1 6.4 39 15-53 10-49 (264)
450 TIGR01082 murC UDP-N-acetylmur 93.6 0.12 2.7E-06 47.4 5.2 43 16-58 1-45 (448)
451 TIGR00561 pntA NAD(P) transhyd 93.6 0.18 3.9E-06 46.9 6.2 46 15-60 165-210 (511)
452 COG3349 Uncharacterized conser 93.6 0.096 2.1E-06 48.1 4.3 33 15-47 1-33 (485)
453 PF01118 Semialdhyde_dh: Semia 93.6 0.14 3.1E-06 38.0 4.6 32 16-47 1-35 (121)
454 PLN02662 cinnamyl-alcohol dehy 93.5 0.13 2.8E-06 44.6 5.0 36 14-49 4-40 (322)
455 PRK08244 hypothetical protein; 93.5 0.096 2.1E-06 48.6 4.4 34 15-48 3-36 (493)
456 PRK06924 short chain dehydroge 93.5 0.18 3.9E-06 41.9 5.7 40 15-54 2-43 (251)
457 COG0644 FixC Dehydrogenases (f 93.5 0.1 2.3E-06 47.0 4.5 36 14-49 3-38 (396)
458 TIGR01759 MalateDH-SF1 malate 93.5 0.12 2.5E-06 45.5 4.6 34 14-47 3-44 (323)
459 PRK06194 hypothetical protein; 93.5 0.24 5.2E-06 42.2 6.6 40 15-54 7-47 (287)
460 TIGR01317 GOGAT_sm_gam glutama 93.5 0.17 3.7E-06 47.0 6.0 34 14-47 143-176 (485)
461 PLN02852 ferredoxin-NADP+ redu 93.5 0.14 3E-06 47.5 5.3 35 14-48 26-62 (491)
462 PRK11445 putative oxidoreducta 93.4 0.099 2.2E-06 46.3 4.2 32 15-47 2-33 (351)
463 PRK12771 putative glutamate sy 93.4 0.16 3.4E-06 48.1 5.7 34 13-46 136-169 (564)
464 PRK12829 short chain dehydroge 93.4 0.22 4.7E-06 41.7 6.0 42 14-55 11-53 (264)
465 PRK06125 short chain dehydroge 93.4 0.26 5.6E-06 41.3 6.5 40 15-54 8-48 (259)
466 PRK06720 hypothetical protein; 93.4 0.27 5.9E-06 38.9 6.2 37 15-51 17-54 (169)
467 PRK06153 hypothetical protein; 93.4 0.11 2.4E-06 46.4 4.3 35 14-48 176-211 (393)
468 cd01338 MDH_choloroplast_like 93.3 0.11 2.4E-06 45.6 4.2 34 15-48 3-44 (322)
469 PRK15181 Vi polysaccharide bio 93.3 0.14 3E-06 45.2 4.9 35 13-47 14-49 (348)
470 PLN02780 ketoreductase/ oxidor 93.3 0.23 5E-06 43.4 6.2 40 15-54 54-94 (320)
471 TIGR01963 PHB_DH 3-hydroxybuty 93.3 0.22 4.7E-06 41.4 5.8 40 16-55 3-43 (255)
472 PRK09853 putative selenate red 93.2 0.17 3.6E-06 50.8 5.8 35 13-47 538-572 (1019)
473 PRK07666 fabG 3-ketoacyl-(acyl 93.2 0.32 6.9E-06 40.1 6.8 39 15-53 8-47 (239)
474 PRK05086 malate dehydrogenase; 93.2 0.12 2.6E-06 45.1 4.3 34 15-48 1-38 (312)
475 TIGR02032 GG-red-SF geranylger 93.2 0.13 2.7E-06 43.8 4.4 33 16-48 2-34 (295)
476 COG4569 MhpF Acetaldehyde dehy 93.2 0.69 1.5E-05 37.5 8.1 47 13-59 3-54 (310)
477 PRK06172 short chain dehydroge 93.2 0.29 6.3E-06 40.8 6.4 40 15-54 8-48 (253)
478 COG1064 AdhP Zn-dependent alco 93.2 0.25 5.4E-06 43.5 6.1 47 14-60 167-213 (339)
479 PRK03815 murD UDP-N-acetylmura 93.2 0.11 2.4E-06 47.1 4.0 32 15-47 1-32 (401)
480 PLN02989 cinnamyl-alcohol dehy 93.1 0.2 4.4E-06 43.5 5.7 37 14-50 5-42 (325)
481 PRK06914 short chain dehydroge 93.1 0.26 5.6E-06 41.8 6.2 39 16-54 5-44 (280)
482 PRK06482 short chain dehydroge 93.1 0.26 5.6E-06 41.7 6.1 41 15-55 3-44 (276)
483 PRK07831 short chain dehydroge 93.1 0.26 5.6E-06 41.4 6.0 40 14-53 17-58 (262)
484 TIGR02622 CDP_4_6_dhtase CDP-g 93.1 0.18 3.9E-06 44.4 5.3 35 15-49 5-40 (349)
485 PRK10015 oxidoreductase; Provi 93.1 0.16 3.4E-06 46.5 5.0 35 14-48 5-39 (429)
486 KOG2741 Dimeric dihydrodiol de 93.1 0.31 6.8E-06 42.6 6.5 57 14-70 6-70 (351)
487 TIGR02733 desat_CrtD C-3',4' d 93.1 0.13 2.9E-06 47.6 4.6 34 15-48 2-35 (492)
488 PRK06139 short chain dehydroge 93.0 0.28 6.1E-06 43.1 6.4 41 15-55 8-49 (330)
489 TIGR03206 benzo_BadH 2-hydroxy 93.0 0.28 6E-06 40.7 6.1 40 15-54 4-44 (250)
490 PRK06196 oxidoreductase; Provi 93.0 0.27 5.8E-06 42.8 6.2 41 15-55 27-68 (315)
491 PRK05650 short chain dehydroge 93.0 0.25 5.4E-06 41.7 5.9 39 15-53 1-40 (270)
492 PRK06996 hypothetical protein; 93.0 0.14 3E-06 46.1 4.6 39 9-47 6-48 (398)
493 PRK08251 short chain dehydroge 93.0 0.28 6E-06 40.7 6.1 40 15-54 3-43 (248)
494 PRK06500 short chain dehydroge 93.0 0.29 6.3E-06 40.5 6.2 41 15-55 7-48 (249)
495 PRK04663 murD UDP-N-acetylmura 93.0 0.8 1.7E-05 41.9 9.5 45 15-60 8-56 (438)
496 PRK08762 molybdopterin biosynt 93.0 0.19 4.2E-06 45.0 5.4 34 14-47 135-169 (376)
497 cd01491 Ube1_repeat1 Ubiquitin 93.0 0.7 1.5E-05 39.8 8.5 42 14-55 19-61 (286)
498 TIGR02023 BchP-ChlP geranylger 93.0 0.15 3.2E-06 45.8 4.6 31 16-46 2-32 (388)
499 PRK05876 short chain dehydroge 92.9 0.31 6.8E-06 41.5 6.3 40 15-54 7-47 (275)
500 PRK05597 molybdopterin biosynt 92.9 0.17 3.8E-06 45.0 4.9 34 14-47 28-62 (355)
No 1
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=2.6e-52 Score=345.86 Aligned_cols=242 Identities=39% Similarity=0.644 Sum_probs=234.2
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH---------------------
Q 036264 12 PSTTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS--------------------- 70 (257)
Q Consensus 12 ~~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~--------------------- 70 (257)
++.++|||||+|+||++|+.+|.++||.|+||||+.++.++|++.|+.++++|.|+++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 45689999999999999999999999999999999999999999999999999999988
Q ss_pred ------------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC-
Q 036264 71 ------------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK- 119 (257)
Q Consensus 71 ------------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~- 119 (257)
.+..++..|+|+||+|+...++.|++++++|||++.++++.++|+.+|+
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~ 192 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKN 192 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcce
Confidence 4456788999999999999999999999999999999999999999998
Q ss_pred ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChHHHHhhhhhhccCCCCCCcccchH
Q 036264 120 PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRPGGFAEYM 199 (257)
Q Consensus 120 ~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 199 (257)
++++|..|.|+.+|+|+|++....+.+++|++.|+++.|+|+.+++++++.+...|+.+.++.|.+..++|.|+|.++++
T Consensus 193 ~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m 272 (327)
T KOG0409|consen 193 VVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLM 272 (327)
T ss_pred EEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcCC
Q 036264 200 VKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKLGTQGLVSVIERINGK 257 (257)
Q Consensus 200 ~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 257 (257)
.||++++.+.+++. +.++|+...++|+|+...+.|+|+.|+++|++.+++.+++
T Consensus 273 ~KDLgla~~~a~~~----~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 273 VKDLGLALNAAESV----KVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred HHHHHHHHHhhhcc----CCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 99999999999999 9999999999999999999999999999999999988764
No 2
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=2.6e-52 Score=351.89 Aligned_cols=234 Identities=41% Similarity=0.665 Sum_probs=225.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhh-HhHHhhcCCcccCCHHHHHHH-----------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSK-ALHLQSQGAFLATSPQHLAQS----------------------- 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~-~~~l~~~g~~~~~s~~e~~~~----------------------- 70 (257)
+||+|||+|.||.+||.+|.++||+|++|||++++ .+.+.+.|+..+.++.|++..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 58999999999999999999999999999999999 666667799999999888877
Q ss_pred ---------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC-ceE
Q 036264 71 ---------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTF 122 (257)
Q Consensus 71 ---------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-~~~ 122 (257)
.++++|..|+|+||+|++..+..|++++++||+++.+++++|+|+.+|. +++
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~ 160 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVH 160 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEE
Confidence 5667899999999999999999999999999999999999999999999 999
Q ss_pred eCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChHHHHhhhhhhccCCCCCCcccchHHhh
Q 036264 123 MGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRPGGFAEYMVKD 202 (257)
Q Consensus 123 ~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd 202 (257)
+|+.|.|+.+|++||++..+++.+++|++.++++.|+|++.+.+++..+...||+++++.+++..++|+|+|+++++.||
T Consensus 161 ~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KD 240 (286)
T COG2084 161 VGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKD 240 (286)
T ss_pred ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCCCCChHHHHHHHH
Q 036264 203 MGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKLGTQGLVSVIE 252 (257)
Q Consensus 203 ~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 252 (257)
++++.+.+++. |+++|+.+.+.++|+.+.+.|+|++|++++++.|+
T Consensus 241 l~la~~~A~~~----g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 241 LGLALDAAKEL----GAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHHHhc----CCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 99999999999 99999999999999999999999999999999874
No 3
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=6.5e-46 Score=319.46 Aligned_cols=237 Identities=41% Similarity=0.644 Sum_probs=222.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH------------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS------------------------ 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~------------------------ 70 (257)
|||+|||+|+||.+|+.+|.++||+|++|||++. .+++.+.|+..+.++.++++.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 5899999999999999999999999999999975 577777787777777776654
Q ss_pred --------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC-ceEe
Q 036264 71 --------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFM 123 (257)
Q Consensus 71 --------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-~~~~ 123 (257)
.+.++|+.|+|+||+|++..++.|++.+++||+++.+++++|+|+.++. ++|+
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~ 159 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV 159 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEe
Confidence 4556799999999999999999999999999999999999999999999 9999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChHHHHhhhhhhccCCCCCCcccchHHhhH
Q 036264 124 GEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRPGGFAEYMVKDM 203 (257)
Q Consensus 124 g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~ 203 (257)
|+.|.|+.+|+++|++...++.+++|++.++++.|+|++++++++..+.+.|++++.+.+++.+++|.|+|+++.+.||+
T Consensus 160 G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl 239 (292)
T PRK15059 160 GGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDL 239 (292)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcC
Q 036264 204 GMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKLGTQGLVSVIERING 256 (257)
Q Consensus 204 ~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~ 256 (257)
+++++++++. |+++|+.+++.++|+.+.+.|+|++|++++++++++.+|
T Consensus 240 ~l~~~~a~~~----g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~~ 288 (292)
T PRK15059 240 NLALQSAKAL----ALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMAN 288 (292)
T ss_pred HHHHHHHHHc----CCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhcC
Confidence 9999999999 999999999999999999999999999999999998776
No 4
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=6e-45 Score=314.58 Aligned_cols=239 Identities=29% Similarity=0.401 Sum_probs=222.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH------------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS------------------------ 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~------------------------ 70 (257)
+||+|||+|+||.+|+.+|+++||+|++|||++++.+++.+.|+..+.++.+++++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 48999999999999999999999999999999999999998888777787776654
Q ss_pred --------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC-ceEe
Q 036264 71 --------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFM 123 (257)
Q Consensus 71 --------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-~~~~ 123 (257)
.+.++|+.|+|+||++++..+..|++++++||+++.+++++++|+.+|. ++++
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~ 161 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA 161 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEee
Confidence 4556789999999999999999999999999999999999999999999 9999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChHHHHhhhh-hhccCCCCCCcccchHHhh
Q 036264 124 GEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGE-RMIKKDFRPGGFAEYMVKD 202 (257)
Q Consensus 124 g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd 202 (257)
|+.|.|+.+|+++|++...++.+++|++.++++.|+|++.+++++..+...++.+..+.+ ++.+++|.++|+++.+.||
T Consensus 162 g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD 241 (296)
T PRK15461 162 GGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKD 241 (296)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhh
Confidence 999999999999999999999999999999999999999999999988777777766654 7889999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcCC
Q 036264 203 MGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKLGTQGLVSVIERINGK 257 (257)
Q Consensus 203 ~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 257 (257)
++++.+++++. |+++|+.+++.++|+.+.+.|+|++|++++++++++.+|+
T Consensus 242 ~~l~~~~a~~~----g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 292 (296)
T PRK15461 242 LGIALDVANQL----HVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVSAGL 292 (296)
T ss_pred HHHHHHHHHHc----CCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCC
Confidence 99999999999 9999999999999999999999999999999999887764
No 5
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=2.3e-42 Score=344.73 Aligned_cols=240 Identities=24% Similarity=0.367 Sum_probs=229.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH-----------------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS----------------------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~----------------------- 70 (257)
..||||||+|+||.+||.+|+++||+|++|||++++.+++.+.|+..++|+.|++.+
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g 83 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEG 83 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhh
Confidence 468999999999999999999999999999999999999999999999999988875
Q ss_pred ---------------------------HHHhcC--ccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC-c
Q 036264 71 ---------------------------FAREKD--CWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-P 120 (257)
Q Consensus 71 ---------------------------~~~~~g--~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-~ 120 (257)
.+.++| +.|+|+||+|++..+..|++++++||+++.+++++|+|+.+|. +
T Consensus 84 ~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i 163 (1378)
T PLN02858 84 AAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKL 163 (1378)
T ss_pred HHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCce
Confidence 455678 8899999999999999999999999999999999999999998 7
Q ss_pred eE-eCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChHHHHhhhhhhccCCCCCCcccchH
Q 036264 121 TF-MGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRPGGFAEYM 199 (257)
Q Consensus 121 ~~-~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 199 (257)
++ +|+.|+|+.+|+++|++...++.+++|++.++++.|+|++.++++++.+++.||+++++.++++.++|.|+|+++.+
T Consensus 164 ~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~ 243 (1378)
T PLN02858 164 YTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVL 243 (1378)
T ss_pred EEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHH
Confidence 76 48999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcCC
Q 036264 200 VKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKLGTQGLVSVIERINGK 257 (257)
Q Consensus 200 ~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 257 (257)
.||+++++++|++. |+++|+.+.+++.|+.+.+.|+|++|++++++++++.+|+
T Consensus 244 ~KDl~la~~~A~~~----g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~~~g~ 297 (1378)
T PLN02858 244 VQNLGIVLDMAKSL----PFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEKVFGV 297 (1378)
T ss_pred HHHHHHHHHHHHHc----CCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHcCC
Confidence 99999999999999 9999999999999999999999999999999999988774
No 6
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=5.9e-42 Score=295.10 Aligned_cols=229 Identities=29% Similarity=0.485 Sum_probs=213.0
Q ss_pred EEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH----------------------------
Q 036264 19 WIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS---------------------------- 70 (257)
Q Consensus 19 vIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~---------------------------- 70 (257)
|||+|+||.+|+.+|.++||+|++|||++++.+.+.+.|+..++++.+++++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 6999999999999999999999999999999999998888777777776655
Q ss_pred ----------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC-ceEeCCcc
Q 036264 71 ----------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMGEAG 127 (257)
Q Consensus 71 ----------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-~~~~g~~g 127 (257)
.+.++|+.|+|+||+|++..+..|++++++||+++.+++++++|+.++. ++++|+.|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g 160 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHG 160 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCC
Confidence 4456799999999999999999999999999999999999999999999 99999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChHHHHhhhh-------hhccCCCCCCcccchHH
Q 036264 128 CGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGE-------RMIKKDFRPGGFAEYMV 200 (257)
Q Consensus 128 ~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~ 200 (257)
.++.+|+++|++....+.+++|++.++++.|+|++++.+++..+.+.|+.+..+.+ .+.+++|+++|++..+.
T Consensus 161 ~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 240 (288)
T TIGR01692 161 AGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALML 240 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999998888887776554 23678999999999999
Q ss_pred hhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCCCCChHHHHHHH
Q 036264 201 KDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKLGTQGLVSVI 251 (257)
Q Consensus 201 kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 251 (257)
||++++.+++++. |+++|+.+.+.++|+++.+.|+|++|++++++++
T Consensus 241 KDl~~~~~~a~~~----g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 241 KDLGLAQDAAKSA----GAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred hhHHHHHHHHHHc----CCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 9999999999999 9999999999999999999999999999999876
No 7
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=3e-41 Score=291.25 Aligned_cols=238 Identities=42% Similarity=0.690 Sum_probs=222.4
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH-------------------------
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS------------------------- 70 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~------------------------- 70 (257)
||||||+|.||.+||.+|+++||+|++|||++++.+.+.+.|...+.++.+++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 5999999999999999999999999999999999999988887766677666654
Q ss_pred -------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC-ceEeC
Q 036264 71 -------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMG 124 (257)
Q Consensus 71 -------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-~~~~g 124 (257)
.+..++..|+++|+++++..+..+++.+++||+++.+++++++|+.++. ++++|
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g 160 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVG 160 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Confidence 3445688999999999998888888899999999999999999999999 99999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChHHHHhhhhhhccCCCCCCcccchHHhhHH
Q 036264 125 EAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRPGGFAEYMVKDMG 204 (257)
Q Consensus 125 ~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~ 204 (257)
+.|.+..+|+++|++....+.+++|++.++++.|+|++++.+++..+...|++++.+.+++.+++|.++|+++++.||++
T Consensus 161 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~ 240 (291)
T TIGR01505 161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLN 240 (291)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcCC
Q 036264 205 MGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKLGTQGLVSVIERINGK 257 (257)
Q Consensus 205 ~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 257 (257)
++.+++++. |+++|+.+++.+.|+.+.+.|+|++|++++++++++.+++
T Consensus 241 ~~~~~a~~~----g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~~~~ 289 (291)
T TIGR01505 241 LALDSAKAV----GANLPNTATVQELFNTLRANGGGQLDHSALVQALELLANH 289 (291)
T ss_pred HHHHHHHHc----CCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHhcCC
Confidence 999999999 9999999999999999999999999999999999987763
No 8
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=7e-41 Score=289.68 Aligned_cols=239 Identities=32% Similarity=0.540 Sum_probs=222.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH------------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS------------------------ 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~------------------------ 70 (257)
|||+|||+|.||.++|.+|++.|++|++|||++++.+++.+.|+..++++++++.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 68999999999999999999999999999999999988888777766677666544
Q ss_pred --------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC-ceEe
Q 036264 71 --------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFM 123 (257)
Q Consensus 71 --------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-~~~~ 123 (257)
.+..+++.|+++|+++++..+..+++.+++||+++.+++++++|+.++. ++++
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~ 162 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT 162 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEe
Confidence 3345688999999999998888999999999999999999999999998 9999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChHHHHhhhhhhccCCCCCCcccchHHhhH
Q 036264 124 GEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRPGGFAEYMVKDM 203 (257)
Q Consensus 124 g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~ 203 (257)
|+.|.|+.+|+++|++...++.+++|++.++++.|+|++++.+++..+.+.|+.++.+.+++..++|.++|+++...||+
T Consensus 163 g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl 242 (296)
T PRK11559 163 GDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL 242 (296)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcCC
Q 036264 204 GMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKLGTQGLVSVIERINGK 257 (257)
Q Consensus 204 ~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 257 (257)
+++++++++. |+++|+.+++.+.|+.+.+.|+|++|++++++++++.+|+
T Consensus 243 ~~~~~~a~~~----g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~ 292 (296)
T PRK11559 243 ANALDTSHGV----GAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKLAKV 292 (296)
T ss_pred HHHHHHHHHc----CCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHhcCC
Confidence 9999999999 9999999999999999999999999999999999887764
No 9
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=4.8e-40 Score=328.16 Aligned_cols=240 Identities=29% Similarity=0.464 Sum_probs=225.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH-----------------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS----------------------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~----------------------- 70 (257)
.++|||||+|+||.+||.+|+++||+|++|||++++.+.+.+.|+..+.++.+++.+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 368999999999999999999999999999999999999998888777788777655
Q ss_pred ---------------------------HHHh--cCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC-c
Q 036264 71 ---------------------------FARE--KDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-P 120 (257)
Q Consensus 71 ---------------------------~~~~--~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-~ 120 (257)
.+.. +|+.|+|+||+|++..+..|++++++||+++.+++++++|+.++. +
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i 483 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKL 483 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcE
Confidence 4445 799999999999999999999999999999999999999999998 7
Q ss_pred eEe-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChHHHHhhhhhhccCCCCCCcccchH
Q 036264 121 TFM-GEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRPGGFAEYM 199 (257)
Q Consensus 121 ~~~-g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 199 (257)
+++ |+.|+|+.+|+++|++...++.+++|++.++++.|+|+++++++++.+.+.||+++++.+++.+++|.|+|+++.+
T Consensus 484 ~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~ 563 (1378)
T PLN02858 484 YVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIF 563 (1378)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHH
Confidence 774 6799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcCC
Q 036264 200 VKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKLGTQGLVSVIERINGK 257 (257)
Q Consensus 200 ~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 257 (257)
.||++++++.+++. |+++|+.+++.++|+.+.+.|+|++|++++++++++.+|+
T Consensus 564 ~KDl~l~~~~a~~~----g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~~~g~ 617 (1378)
T PLN02858 564 VKDLGIVSREGSSR----KIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYETLTGV 617 (1378)
T ss_pred HHHHHHHHHHHHHc----CCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHhcCC
Confidence 99999999999999 9999999999999999999999999999999999987764
No 10
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=4e-37 Score=266.23 Aligned_cols=231 Identities=23% Similarity=0.260 Sum_probs=209.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH------------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS------------------------ 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~------------------------ 70 (257)
|+|||||+|+||.+|+.+|.++|++|++|||++++.+.+.+.|+..+.++++++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i 80 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL 80 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence 58999999999999999999999999999999999999988888888888777531
Q ss_pred --------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC----c
Q 036264 71 --------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK----P 120 (257)
Q Consensus 71 --------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~----~ 120 (257)
.+.++|+.|+|+||+|++..+..|+ ++++||+++++++++++|+.++. +
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~ 159 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEGPGY 159 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcCCcE
Confidence 4556789999999999999999997 89999999999999999999984 8
Q ss_pred eEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhc-CCChHHHHhhhhhhccCCCCCCcccc
Q 036264 121 TFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAG--LDVRKWMDAIKGG-AAGSMAMELYGERMIKKDFRPGGFAE 197 (257)
Q Consensus 121 ~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G--~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~ 197 (257)
+|+|++|.+..+|+++|++...++.+++|++.++++.| +|++.++++++.+ .+.|++++.+.+.+..+++ .+.++
T Consensus 160 ~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~--~~~l~ 237 (299)
T PRK12490 160 VHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK--LAGIK 237 (299)
T ss_pred EEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC--hhhhh
Confidence 99999999999999999999999999999999999999 9999999999964 4889999988888766543 35788
Q ss_pred hHHhhH---HHHHHHHhhcccccCCCCchHHHHH-HHHHHHHHCCCCCCChHHHHHHHH
Q 036264 198 YMVKDM---GMGVDVVEESEDERVVVLPGAALGK-QLFSAMVANGDGKLGTQGLVSVIE 252 (257)
Q Consensus 198 ~~~kd~---~~~~~~a~~~~~~~g~~~pi~~~~~-~~~~~a~~~g~g~~d~~~~~~~~~ 252 (257)
.+.||+ +++++.+++. |+++|++..+. .++....++|.|..|++++.+++-
T Consensus 238 ~~~KD~~~~~l~~~~A~~~----g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 238 GYVNDSGEGRWTVEEAIEL----AVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred HHHHhcCcHHHHHHHHHHc----CCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 999998 7999999999 99999999995 999999999999999999988764
No 11
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=6.8e-37 Score=277.47 Aligned_cols=217 Identities=23% Similarity=0.346 Sum_probs=196.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc----CCc---ccCCHHHHHHH----------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ----GAF---LATSPQHLAQS---------------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~----g~~---~~~s~~e~~~~---------------- 70 (257)
.++|||||+|.||++||.+|+++||+|+||||++++++++.+. |+. .+.|++|+++.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a 85 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP 85 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH
Confidence 5689999999999999999999999999999999999998864 543 67788888752
Q ss_pred ----------------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHH
Q 036264 71 ----------------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEV 116 (257)
Q Consensus 71 ----------------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~ 116 (257)
.+.++|+.|+++||+|++.++..|+ ++++||+++++++++|+|+.
T Consensus 86 V~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL~~ 164 (493)
T PLN02350 86 VDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDILEK 164 (493)
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHHHH
Confidence 5667899999999999999999998 99999999999999999999
Q ss_pred hC------C-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HhhcCCChHHHHhhhhhh
Q 036264 117 LG------K-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADK-AGLDVRKWMDA---IKGGAAGSMAMELYGERM 185 (257)
Q Consensus 117 ~g------~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~---~~~~~~~s~~~~~~~~~~ 185 (257)
++ . ++|+|+.|+|+.+|+++|.+.+..+++++|++.++++ .|+|++++.++ ++.+...|++++.+.+.+
T Consensus 165 ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l 244 (493)
T PLN02350 165 VAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIF 244 (493)
T ss_pred HhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHH
Confidence 98 4 9999999999999999999999999999999999999 59999999988 668889999999998888
Q ss_pred ccCC-CCCCcccchHHhhHH------HHHHHHhhcccccCCCCch-HHHHHHHHHHHH
Q 036264 186 IKKD-FRPGGFAEYMVKDMG------MGVDVVEESEDERVVVLPG-AALGKQLFSAMV 235 (257)
Q Consensus 186 ~~~~-~~~~~~~~~~~kd~~------~~~~~a~~~~~~~g~~~pi-~~~~~~~~~~a~ 235 (257)
..++ +.|+|.++.+.||++ +..+.+.++ |+++|+ .+++.+.|....
T Consensus 245 ~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~l----gv~~p~i~~av~~r~~s~~ 298 (493)
T PLN02350 245 SVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAEL----SVAAPTIAASLDARYLSGL 298 (493)
T ss_pred hhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHh----CCCccHHHHHHHHHHHhcc
Confidence 7774 888999999999999 899999999 999999 677776665543
No 12
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=5.2e-35 Score=253.37 Aligned_cols=230 Identities=25% Similarity=0.313 Sum_probs=200.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH------------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS------------------------ 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~------------------------ 70 (257)
|||||||+|+||++|+.+|+++|++|++|||++++.+++.+.|+..+++++++++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l 80 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL 80 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence 58999999999999999999999999999999999999988888877777766541
Q ss_pred --------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC-----
Q 036264 71 --------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK----- 119 (257)
Q Consensus 71 --------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~----- 119 (257)
.+.++|+.|+|+||+|++..+..|. ++++||+++++++++++|+.++.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~ 159 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRAEDG 159 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccccCC
Confidence 4556799999999999999999885 89999999999999999999986
Q ss_pred ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhhcC-CChHHHHhhhhhhccCCCCCCcc-
Q 036264 120 PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADK--AGLDVRKWMDAIKGGA-AGSMAMELYGERMIKKDFRPGGF- 195 (257)
Q Consensus 120 ~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~--~G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~- 195 (257)
++|+|+.|+|+.+|+++|.+....+.+++|++.++++ .|+|+++++++++.+. ..|++++.+.+.+..+ +.+.
T Consensus 160 ~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~---~~~~~ 236 (301)
T PRK09599 160 YLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAED---PKLDE 236 (301)
T ss_pred eEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcC---CCHHH
Confidence 7999999999999999999999999999999999999 9999999999999775 6889888887777443 2232
Q ss_pred cchHHhh---HHHHHHHHhhcccccCCCCchHHHHHH-HHHHHHHCCCCCCChHHHHHHHH
Q 036264 196 AEYMVKD---MGMGVDVVEESEDERVVVLPGAALGKQ-LFSAMVANGDGKLGTQGLVSVIE 252 (257)
Q Consensus 196 ~~~~~kd---~~~~~~~a~~~~~~~g~~~pi~~~~~~-~~~~a~~~g~g~~d~~~~~~~~~ 252 (257)
+....|| ++++++.+.+. |+++|.+.++.. .|....+.|+++.|.+++.+++-
T Consensus 237 ~~~~~kd~~~~~~~~~~A~~~----~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg 293 (301)
T PRK09599 237 ISGYVEDSGEGRWTVEEAIDL----AVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFG 293 (301)
T ss_pred HHHHHHhhCcHHHHHHHHHHc----CCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcC
Confidence 3233444 58899999999 999999998544 58888889999999999988763
No 13
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=6.9e-31 Score=227.15 Aligned_cols=234 Identities=18% Similarity=0.216 Sum_probs=194.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH------------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS------------------------ 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~------------------------ 70 (257)
|||||||+|+||.+|+.+|.++||+|++|||++++.+.+.+.+.....++++++..
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~ 80 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA 80 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence 58999999999999999999999999999999999999988877666666655431
Q ss_pred -------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC----ce
Q 036264 71 -------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK----PT 121 (257)
Q Consensus 71 -------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~----~~ 121 (257)
.+.++|+.|+++|++|++..+..| +++++||+++.+++++++|+.++. ++
T Consensus 81 ~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~~~~~ 159 (298)
T TIGR00872 81 PTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYL 159 (298)
T ss_pred hhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcCCCEE
Confidence 455678999999999999999998 599999999999999999999984 79
Q ss_pred EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcC-CChHHHHhhhhhhccCCCCCCcccc-
Q 036264 122 FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKA--GLDVRKWMDAIKGGA-AGSMAMELYGERMIKKDFRPGGFAE- 197 (257)
Q Consensus 122 ~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~--G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~- 197 (257)
|+|+.|+++.+|+++|.+....+..++|++.++++. |+|++++.++++.+. ..|++++.+.+.+..+++.+.|...
T Consensus 160 ~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~~~~~ 239 (298)
T TIGR00872 160 YCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEFSGRV 239 (298)
T ss_pred EECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999999999999999999999999999998 569999999999876 5899999888777776665555543
Q ss_pred hHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCCCCChHHHHHHHHHhcC
Q 036264 198 YMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKLGTQGLVSVIERING 256 (257)
Q Consensus 198 ~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~ 256 (257)
...+|.+.++..+.+. |+|+|.+.++ ++.+..... .+.-...++...|...|
T Consensus 240 ~~~~~~r~~v~~a~~~----g~p~P~~~~a--l~~~~~~~~-~~~~~~~~~~~~r~~fg 291 (298)
T TIGR00872 240 SDSGEGRWTVIAAIDL----GVPAPVIATS--LQSRFASRD-LDDFANKVLAALRKEFG 291 (298)
T ss_pred HhhccHHHHHHHHHHh----CCCHHHHHHH--HHHHHHhCC-CCCcHHHHHHHHHHhhC
Confidence 3567889999999999 9999999874 444444432 12223446666665544
No 14
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.97 E-value=9.3e-30 Score=230.69 Aligned_cols=208 Identities=21% Similarity=0.306 Sum_probs=173.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc----C--CcccCCHHHHHHH------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ----G--AFLATSPQHLAQS------------------ 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~------------------ 70 (257)
.+|||||+|.||++||.+|+++||+|++|||++++++++.+. | +..+++++|++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 589999999999999999999999999999999999998764 4 3467788888752
Q ss_pred --------------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhC
Q 036264 71 --------------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG 118 (257)
Q Consensus 71 --------------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g 118 (257)
.+.++|+.|+|+||+|++.++..|. ++++||+++++++++|+|+.++
T Consensus 82 ~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~~ia 160 (470)
T PTZ00142 82 ETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILEKCS 160 (470)
T ss_pred HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHh
Confidence 5667899999999999999999998 8999999999999999999997
Q ss_pred C-------ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCChHHHHhhhhhhcc
Q 036264 119 K-------PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFAD-KAGLDVRKWMDAI---KGGAAGSMAMELYGERMIK 187 (257)
Q Consensus 119 ~-------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~ 187 (257)
. ++|+|+.|+|+.+|+++|.+.+..+++++|++.+++ +.|++++++.+++ +.+...|++++.+...+..
T Consensus 161 ~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~~~~ 240 (470)
T PTZ00142 161 AKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKILAK 240 (470)
T ss_pred hhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHHhhc
Confidence 5 489999999999999999999999999999999998 7999999998887 5777889998877665554
Q ss_pred CCCCC-CcccchHH-----hh-HHHHHHHHhhcccccCCCCchHHHH
Q 036264 188 KDFRP-GGFAEYMV-----KD-MGMGVDVVEESEDERVVVLPGAALG 227 (257)
Q Consensus 188 ~~~~~-~~~~~~~~-----kd-~~~~~~~a~~~~~~~g~~~pi~~~~ 227 (257)
.|-.. ++-++... |- =+...+.|-++ |+|.|++..+
T Consensus 241 ~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~----~v~~p~i~~a 283 (470)
T PTZ00142 241 KDDLGEEHLVDKILDIAGSKGTGKWTVQEALER----GIPVPTMAAS 283 (470)
T ss_pred ccccCCCcchhhhcCcccCCchHHhHHHHHHHc----CCCchHHHHH
Confidence 43221 12222211 11 12567788888 9999988644
No 15
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.97 E-value=2.7e-29 Score=227.77 Aligned_cols=207 Identities=23% Similarity=0.326 Sum_probs=172.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc-----CCcccCCHHHHHHH--------------------
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ-----GAFLATSPQHLAQS-------------------- 70 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~-----g~~~~~s~~e~~~~-------------------- 70 (257)
+|||||+|+||.+||.+|+++||+|++|||++++++++.+. ++..+.++++++..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 49999999999999999999999999999999999999865 25566777776642
Q ss_pred ------------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC-
Q 036264 71 ------------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK- 119 (257)
Q Consensus 71 ------------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~- 119 (257)
.+.++|+.|+++||+|++.++..|. ++++||+++++++++|+|+.++.
T Consensus 81 i~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 81 INQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred HHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHHhhh
Confidence 4556799999999999999999998 89999999999999999999987
Q ss_pred c------eEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCChHHHHhhhhhhccCC
Q 036264 120 P------TFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFAD-KAGLDVRKWMDAI---KGGAAGSMAMELYGERMIKKD 189 (257)
Q Consensus 120 ~------~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~ 189 (257)
+ +|+|+.|+|+.+|+++|.+.+..+++++|++.+++ +.|++++++.+++ +.+...|++++.+.+.+..+|
T Consensus 160 ~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~~~d 239 (467)
T TIGR00873 160 VDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKKKD 239 (467)
T ss_pred cCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHHhccC
Confidence 4 79999999999999999999999999999999985 7999999999888 677889999998887776655
Q ss_pred CCCCcccchHH-----hh-HHHHHHHHhhcccccCCCCchHHHH
Q 036264 190 FRPGGFAEYMV-----KD-MGMGVDVVEESEDERVVVLPGAALG 227 (257)
Q Consensus 190 ~~~~~~~~~~~-----kd-~~~~~~~a~~~~~~~g~~~pi~~~~ 227 (257)
-...+-++... |- -+..+..|-++ |+|.|++...
T Consensus 240 ~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~----~v~~p~i~~a 279 (467)
T TIGR00873 240 EDGKPLVDKILDTAGQKGTGKWTAISALDL----GVPVTLITES 279 (467)
T ss_pred CCCCccHHhhcCcccCccHHHHHHHHHHHc----CCCchHHHHH
Confidence 32111122111 11 13567788888 9999987643
No 16
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=9.2e-28 Score=193.37 Aligned_cols=227 Identities=25% Similarity=0.351 Sum_probs=182.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH------------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS------------------------ 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~------------------------ 70 (257)
|+||.||+|.||..|+.+|.+.||+|++||+|++.++++.+.|++.++|+++.+..
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l 80 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL 80 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999988877
Q ss_pred --------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC----c
Q 036264 71 --------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK----P 120 (257)
Q Consensus 71 --------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~----~ 120 (257)
.+.++|++|+|+-.+|+..+++.|- ++++||+++++++++|+|+.++. .
T Consensus 81 a~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge~Gy 159 (300)
T COG1023 81 APLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGEDGY 159 (300)
T ss_pred HhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCcCcc
Confidence 5778999999999999999999986 99999999999999999999864 7
Q ss_pred eEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcC-CChHHHHhhhhhhccC-CCCCCccc
Q 036264 121 TFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKA--GLDVRKWMDAIKGGA-AGSMAMELYGERMIKK-DFRPGGFA 196 (257)
Q Consensus 121 ~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~--G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~-~~~~~~~~ 196 (257)
.|+|+.|+++.+|+++|.+-++++++++|.+.+.++. .+|.+.+.++++.++ ..||+++.....+.+. +... +
T Consensus 160 l~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q---~ 236 (300)
T COG1023 160 LYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQ---I 236 (300)
T ss_pred ccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHH---h
Confidence 8999999999999999999999999999999999875 667889999999987 6899887654433211 1110 0
Q ss_pred chHHhhH---HHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCCCCChHH-HHHHHHH
Q 036264 197 EYMVKDM---GMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKLGTQG-LVSVIER 253 (257)
Q Consensus 197 ~~~~kd~---~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g~~d~~~-~~~~~~~ 253 (257)
.-...|. +..++.+-++ |+|.|++. ..++.+..+++. ..|+. ++..+|.
T Consensus 237 ~g~v~dSGEGrWTv~~aldl----gvpaPVia--~al~~Rf~S~~~--d~f~~kvlaalR~ 289 (300)
T COG1023 237 SGRVSDSGEGRWTVEEALDL----GVPAPVIA--LALMMRFRSRQD--DTFAGKVLAALRN 289 (300)
T ss_pred cCeeccCCCceeehHHHHhc----CCCchHHH--HHHHHHHhccch--hhHHHHHHHHHHH
Confidence 0011111 2345677788 99999986 445566666542 33433 4444444
No 17
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.96 E-value=9.8e-28 Score=216.76 Aligned_cols=197 Identities=21% Similarity=0.304 Sum_probs=171.5
Q ss_pred hHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc-----CCcccCCHHHHHHH-----------------------------
Q 036264 25 MGSPMASRLLAAGYFLTVFARNPSKALHLQSQ-----GAFLATSPQHLAQS----------------------------- 70 (257)
Q Consensus 25 mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~-----g~~~~~s~~e~~~~----------------------------- 70 (257)
||.+||.||+++||+|.+|||++++.+++.+. |+..++|++|+++.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~ 80 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLE 80 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999874 58888999998874
Q ss_pred ---------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC-c-------e
Q 036264 71 ---------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-P-------T 121 (257)
Q Consensus 71 ---------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-~-------~ 121 (257)
.+.++|+.|+++||+|++.++..|. ++++||+++++++++|+|+.++. + +
T Consensus 81 ~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~c~~ 159 (459)
T PRK09287 81 KGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEPCVT 159 (459)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCCcee
Confidence 5667899999999999999999998 99999999999999999999997 7 9
Q ss_pred EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCChHHHHhhhhhhccCCCCCCcccc
Q 036264 122 FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFAD-KAGLDVRKWMDAI---KGGAAGSMAMELYGERMIKKDFRPGGFAE 197 (257)
Q Consensus 122 ~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 197 (257)
|+|+.|+|+.+|+++|.+.+..+++++|++.+++ +.|++++++.+++ +.+...|++++.+.+.+..+|+..+..+-
T Consensus 160 ~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~~~~ 239 (459)
T PRK09287 160 YIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGKPLV 239 (459)
T ss_pred eeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCCcch
Confidence 9999999999999999999999999999999999 5999999998888 57788999999999988888875443321
Q ss_pred hHHhhH-------HHHHHHHhhcccccCCCCchHHH
Q 036264 198 YMVKDM-------GMGVDVVEESEDERVVVLPGAAL 226 (257)
Q Consensus 198 ~~~kd~-------~~~~~~a~~~~~~~g~~~pi~~~ 226 (257)
....|. +.....|-++ |+|.|++..
T Consensus 240 d~i~d~~~~~gtg~Wt~~~a~~~----~v~~~~i~~ 271 (459)
T PRK09287 240 DVILDKAGQKGTGKWTSQSALDL----GVPLTLITE 271 (459)
T ss_pred HHhcCcccCCcHHHHHHHHHHHh----CCChHHHHH
Confidence 111221 2567778888 999998753
No 18
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.95 E-value=9.4e-27 Score=209.87 Aligned_cols=205 Identities=17% Similarity=0.128 Sum_probs=169.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc-------------------C-CcccCCHHHHHHH----
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ-------------------G-AFLATSPQHLAQS---- 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~---- 70 (257)
|||+|||+|+||.++|.+|+++||+|++||+++++.+.+++. | +..++++.+++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 589999999999999999999999999999999998877641 2 3444555554433
Q ss_pred ----------------------------------------------------HHHhc--Ccc-EEeccCCCCcccccCcc
Q 036264 71 ----------------------------------------------------FAREK--DCW-AVDAPVSGGDIGARDGK 95 (257)
Q Consensus 71 ----------------------------------------------------~~~~~--g~~-~~~~pv~~~~~~~~~g~ 95 (257)
.+.++ |.. +.+.|+.++|..+..|.
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~ 160 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLREGN 160 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCC
Confidence 11112 322 45667777777777777
Q ss_pred e--------EEEeCCCHHHHHHHHHHHHHhC-C-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 036264 96 L--------AIFAAGDSAVVQWLTPLFEVLG-K-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWM 165 (257)
Q Consensus 96 ~--------~~~~~g~~~~~~~~~~ll~~~g-~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 165 (257)
. .+++|++++..++++++|+.++ . ++++++.+.++.+|+++|++.+..+++++|+..+|++.|+|++++.
T Consensus 161 ~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~~v~ 240 (411)
T TIGR03026 161 AVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVYEVI 240 (411)
T ss_pred hhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 5 7888899999999999999998 5 9999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCChHHHHhhhhhhccCCCCCCc--ccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHH
Q 036264 166 DAIKGGAAGSMAMELYGERMIKKDFRPGG--FAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAM 234 (257)
Q Consensus 166 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a 234 (257)
++++.+ +++..+++.|+| ...++.||+.++++.+++. |+++|+++++.++-+..
T Consensus 241 ~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~----g~~~~l~~~~~~~N~~~ 296 (411)
T TIGR03026 241 EAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKEL----GYNPELIEAAREINDSQ 296 (411)
T ss_pred HHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhc----CCCcHHHHHHHHHHHHh
Confidence 998764 234456677765 5688999999999999999 99999999998875543
No 19
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.95 E-value=5.1e-27 Score=205.82 Aligned_cols=229 Identities=15% Similarity=0.150 Sum_probs=183.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc--------C------CcccCCHHHHHHH--------
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ--------G------AFLATSPQHLAQS-------- 70 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~--------g------~~~~~s~~e~~~~-------- 70 (257)
++|||+|||+|.||++||.+|+++||+|++|+|++++.+.+.+. | +..++++++++..
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v 82 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAV 82 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEEC
Confidence 35799999999999999999999999999999999988888754 3 3355677776544
Q ss_pred -------------------------------------HHHh---cCccEEeccCCCCcccccCcceEEEeCCCHHHHHHH
Q 036264 71 -------------------------------------FARE---KDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWL 110 (257)
Q Consensus 71 -------------------------------------~~~~---~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~ 110 (257)
.+.. .++.++++|..........+++.++.+++++.++++
T Consensus 83 ~~~~~~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v 162 (328)
T PRK14618 83 PSKALRETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRV 162 (328)
T ss_pred chHHHHHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHH
Confidence 1111 344455666555444555567788999999999999
Q ss_pred HHHHHHhCC-ce--------EeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc-
Q 036264 111 TPLFEVLGK-PT--------FMGE---------AGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGG- 171 (257)
Q Consensus 111 ~~ll~~~g~-~~--------~~g~---------~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~- 171 (257)
+++|+..+. ++ +++. .|.+..+|+.+|........++.|+..++++.|+++++++++...+
T Consensus 163 ~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gD 242 (328)
T PRK14618 163 QAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGD 242 (328)
T ss_pred HHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhh
Confidence 999999887 65 2443 4788889999999999999999999999999999999999997763
Q ss_pred ---CCChHHHHhhh--hhhccC---C-CCCCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCCCC
Q 036264 172 ---AAGSMAMELYG--ERMIKK---D-FRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKL 242 (257)
Q Consensus 172 ---~~~s~~~~~~~--~~~~~~---~-~~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g~~ 242 (257)
++.|+.++++. +++..+ + +.++|.+..+.||++++.+++++. ++++|+++++++++ +++.
T Consensus 243 l~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~----~~~~Pl~~~~~~~~-------~~~~ 311 (328)
T PRK14618 243 LIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAH----GHDLPIVEAVARVA-------RGGW 311 (328)
T ss_pred eeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHh----CCCCCHHHHHHHHH-------hCCC
Confidence 56777777774 467777 4 677899999999999999999999 99999999999888 4566
Q ss_pred ChHHHHHHHH
Q 036264 243 GTQGLVSVIE 252 (257)
Q Consensus 243 d~~~~~~~~~ 252 (257)
|...+++.+-
T Consensus 312 ~~~~~~~~~~ 321 (328)
T PRK14618 312 DPLAGLRSLM 321 (328)
T ss_pred CHHHHHHHHh
Confidence 7666666553
No 20
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.92 E-value=5.9e-24 Score=160.30 Aligned_cols=121 Identities=32% Similarity=0.568 Sum_probs=113.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChHHHHhhhhh-hccCCCCCCcccchHHhhHHH
Q 036264 127 GCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGER-MIKKDFRPGGFAEYMVKDMGM 205 (257)
Q Consensus 127 g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~kd~~~ 205 (257)
|+|+.+|+++|++...++.+++|++.++++.|+|++++++++..+++.|++++++.++ +.+++|.|+|+++.+.||+++
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 6899999999999999999999999999999999999999999999999999999985 899999999999999999999
Q ss_pred HHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCCCCChHHHHHHH
Q 036264 206 GVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKLGTQGLVSVI 251 (257)
Q Consensus 206 ~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 251 (257)
+.+.+++. |+|+|+.+.+.+.|+.+.++|+|++|+++++++|
T Consensus 81 ~~~~a~~~----g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 81 ALDLAKEA----GVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHT----T---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred HHHHHHHc----CCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 99999999 9999999999999999999999999999999986
No 21
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.91 E-value=1.5e-23 Score=183.47 Aligned_cols=227 Identities=14% Similarity=0.119 Sum_probs=167.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc--------------CCcccCCHHHHHHH---------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ--------------GAFLATSPQHLAQS--------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~--------------g~~~~~s~~e~~~~--------- 70 (257)
||||+|||+|+||++++.+|+++||+|++|+|++++.+.+.+. ++....++++++..
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP 80 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC
Confidence 3699999999999999999999999999999999999888775 24445666666544
Q ss_pred --------------------------------------HHHhc-----CccEEeccCCCCcccccCcceEEEeCCCHHHH
Q 036264 71 --------------------------------------FAREK-----DCWAVDAPVSGGDIGARDGKLAIFAAGDSAVV 107 (257)
Q Consensus 71 --------------------------------------~~~~~-----g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~ 107 (257)
.+.+. ...++.+|..........+++.++.+++.+.+
T Consensus 81 ~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~ 160 (325)
T PRK00094 81 SQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDEELA 160 (325)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCHHHH
Confidence 11111 12234444443333344455567777789999
Q ss_pred HHHHHHHHHhCC-ceEeCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036264 108 QWLTPLFEVLGK-PTFMGE-----------------AGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIK 169 (257)
Q Consensus 108 ~~~~~ll~~~g~-~~~~g~-----------------~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 169 (257)
++++++|+..+. +++..+ .|.+..+|+++|.+.......+.|++.++++.|+|++++.++..
T Consensus 161 ~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~ 240 (325)
T PRK00094 161 ERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLAG 240 (325)
T ss_pred HHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccH
Confidence 999999998886 555444 26777789999999999999999999999999999999988765
Q ss_pred hc----CCChHHHHhhh--hhhccCC-C-----CCCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHC
Q 036264 170 GG----AAGSMAMELYG--ERMIKKD-F-----RPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVAN 237 (257)
Q Consensus 170 ~~----~~~s~~~~~~~--~~~~~~~-~-----~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~ 237 (257)
.+ ...|+..+++. ..+..+. + .++ .+.++.||++.++++++++ |+++|+.++++++|
T Consensus 241 ~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~----~~~~P~~~~~~~~~------ 309 (325)
T PRK00094 241 LGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKL----GVEMPITEAVYAVL------ 309 (325)
T ss_pred hhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHh----CCCCCHHHHHHHHH------
Confidence 44 23344333333 2232222 1 113 5677899999999999999 99999999999998
Q ss_pred CCCCCChHHHHHHHH
Q 036264 238 GDGKLGTQGLVSVIE 252 (257)
Q Consensus 238 g~g~~d~~~~~~~~~ 252 (257)
+++.+...+++.+.
T Consensus 310 -~~~~~~~~~~~~~~ 323 (325)
T PRK00094 310 -YEGKDPREAVEDLM 323 (325)
T ss_pred -cCCCCHHHHHHHHh
Confidence 56777777766553
No 22
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=5.4e-23 Score=176.63 Aligned_cols=212 Identities=23% Similarity=0.304 Sum_probs=173.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc-----CCcccCCHHHHHHH------------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ-----GAFLATSPQHLAQS------------------ 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~-----g~~~~~s~~e~~~~------------------ 70 (257)
.+.||+||+|.||+.+|.|+.++||.|.+|||++++.+++.+. .+..+.|++|.+..
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD 82 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD 82 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence 3579999999999999999999999999999999999999765 45778899998877
Q ss_pred --------------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhC
Q 036264 71 --------------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG 118 (257)
Q Consensus 71 --------------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g 118 (257)
.+.+.|+.|+..-|+|+..++..|. .+|.||++++++.++|+|+.++
T Consensus 83 ~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil~~Ia 161 (473)
T COG0362 83 AVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPILTKIA 161 (473)
T ss_pred HHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHHHHHH
Confidence 5678899999999999999999997 9999999999999999999884
Q ss_pred ------C-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHH---HHhhcCCChHHHHhhhhhhcc
Q 036264 119 ------K-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADK-AGLDVRKWMD---AIKGGAAGSMAMELYGERMIK 187 (257)
Q Consensus 119 ------~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~ 187 (257)
+ +.|+|+.|+|+.+|+++|.+-+.-+++++|+..+.+. .|++.+++.+ -++.+...|.+.+.+..-+..
T Consensus 162 Ak~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL~~ 241 (473)
T COG0362 162 AKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILRK 241 (473)
T ss_pred hhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHHhh
Confidence 3 8899999999999999999999999999999999987 8999776554 567777888887776655554
Q ss_pred CCCCCCccc-chHH-----hhH-HHHHHHHhhcccccCCCCchHH-HHHHH
Q 036264 188 KDFRPGGFA-EYMV-----KDM-GMGVDVVEESEDERVVVLPGAA-LGKQL 230 (257)
Q Consensus 188 ~~~~~~~~~-~~~~-----kd~-~~~~~~a~~~~~~~g~~~pi~~-~~~~~ 230 (257)
.|-..+-++ +..+ |-. +.....|-++ |+|+|++. +|...
T Consensus 242 kD~~~~kplvd~ILD~AgQKGTGkWt~~~Aldl----GvP~t~I~eaVfAR 288 (473)
T COG0362 242 KDEEGGKPLVDKILDKAGQKGTGKWTVISALDL----GVPLTLITEAVFAR 288 (473)
T ss_pred cCcccCCchHHHHHHHhcCCCcchhhHHHHHHc----CCCcHHHHHHHHHH
Confidence 544333222 2221 111 2456778888 99998764 44443
No 23
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.90 E-value=3.8e-24 Score=169.36 Aligned_cols=112 Identities=44% Similarity=0.692 Sum_probs=100.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH-----------------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS----------------------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~----------------------- 70 (257)
||||||||+|+||++||++|.++||+|++|||++++.+++.+.|+..++|++|++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence 479999999999999999999999999999999999999999999999999999887
Q ss_pred --------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCC-ce-E
Q 036264 71 --------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PT-F 122 (257)
Q Consensus 71 --------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-~~-~ 122 (257)
.+..+|+.|+|+||+|++..+..|++++++||+++.+++++++|+.++. ++ +
T Consensus 81 ~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~~ 160 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYHY 160 (163)
T ss_dssp GGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEEE
T ss_pred hhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCceee
Confidence 4566899999999999999999999999999999999999999999999 88 4
Q ss_pred eCC
Q 036264 123 MGE 125 (257)
Q Consensus 123 ~g~ 125 (257)
+|+
T Consensus 161 ~G~ 163 (163)
T PF03446_consen 161 VGP 163 (163)
T ss_dssp -ES
T ss_pred eCc
Confidence 475
No 24
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.89 E-value=1.3e-21 Score=170.10 Aligned_cols=218 Identities=16% Similarity=0.112 Sum_probs=168.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHH-----------hhcCC-------------cccCCHHHHHHH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHL-----------QSQGA-------------FLATSPQHLAQS 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l-----------~~~g~-------------~~~~s~~e~~~~ 70 (257)
|+|+|||+|.||++||.+|+++||+|++|||+++..+.. .+.|. ..+.++++++.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 589999999999999999999999999999998876653 23342 455666655443
Q ss_pred ----------------------------------------------HHHhcCccEEeccCCCCcccccCcceEEEeC---
Q 036264 71 ----------------------------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAA--- 101 (257)
Q Consensus 71 ----------------------------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~--- 101 (257)
.+...+..+.+.|+.+.... .++.+++
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~----~lveiv~~~~ 158 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLI----PVVEVVPAPW 158 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccC----ceEEEeCCCC
Confidence 11123445677787653211 2456775
Q ss_pred CCHHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChHHHHh
Q 036264 102 GDSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMEL 180 (257)
Q Consensus 102 g~~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~ 180 (257)
++++.+++++++++.+|+ ++++++.+.|. ++||+ ....++|++.++++.|++++++.+++..+.+.+|.+
T Consensus 159 t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~-- 229 (308)
T PRK06129 159 TAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSF-- 229 (308)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccC--
Confidence 789999999999999999 99999877775 45554 457999999999999999999999999888887765
Q ss_pred hhhhhccCCCCCCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCCCCChHHHHH
Q 036264 181 YGERMIKKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKLGTQGLVS 249 (257)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g~~d~~~~~~ 249 (257)
+.|.+..+++.++|....+.||..+..+.+++. +.+.|++....+-.....+.-++..++..+.+
T Consensus 230 ~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (308)
T PRK06129 230 MGPFETIDLNAPGGVADYAQRYGPMYRRMAAER----GQPVPWDGELVARVEAERRAALPLDQLAARQA 294 (308)
T ss_pred cCHHHHHhccccccHHHHHHHHHHHHHhhcccc----CCCchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 567777777878898899999999999999999 99999987666655555555577777776654
No 25
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.89 E-value=1.4e-21 Score=176.14 Aligned_cols=202 Identities=15% Similarity=0.144 Sum_probs=152.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCc----------------ccCCHHHHHHH------
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAF----------------LATSPQHLAQS------ 70 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~----------------~~~s~~e~~~~------ 70 (257)
..|||+|||+|+||.+||.+|++ ||+|++||+++++++.++ .|.. ..++..+++.+
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 34799999999999999999887 699999999999999998 3322 12222223322
Q ss_pred ---------------------------------------------------HHHh-cCccEEec--------cCCCCccc
Q 036264 71 ---------------------------------------------------FARE-KDCWAVDA--------PVSGGDIG 90 (257)
Q Consensus 71 ---------------------------------------------------~~~~-~g~~~~~~--------pv~~~~~~ 90 (257)
.+.+ .|..+.+. |+.++...
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~ 162 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKK 162 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccc
Confidence 1111 24443332 34444433
Q ss_pred ccCcce-EEEeCCCHHHHHHHHHHHHHhC-C-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 036264 91 ARDGKL-AIFAAGDSAVVQWLTPLFEVLG-K-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDA 167 (257)
Q Consensus 91 ~~~g~~-~~~~~g~~~~~~~~~~ll~~~g-~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~ 167 (257)
....++ .++.|++++..+.++++++.+. . ++++++.+.|+.+|+++|++.++.+++++|+..+|++.|+|.+++.++
T Consensus 163 ~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a 242 (425)
T PRK15182 163 HRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRA 242 (425)
T ss_pred ccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 333333 3555668888899999999987 3 888999999999999999999999999999999999999999999999
Q ss_pred HhhcCCChHHHHhhhhhhccCCCCCC-cccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHH
Q 036264 168 IKGGAAGSMAMELYGERMIKKDFRPG-GFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSA 233 (257)
Q Consensus 168 ~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~ 233 (257)
++.+ +.+ ..+.|| +.-.|+.||...+...+++. |+.++++++++++-+.
T Consensus 243 ~~~~----~~~---------~~~~pG~vGG~ClpkD~~~L~~~a~~~----g~~~~l~~~a~~iN~~ 292 (425)
T PRK15182 243 AGSK----WNF---------LPFRPGLVGGHCIGVDPYYLTHKSQGI----GYYPEIILAGRRLNDN 292 (425)
T ss_pred hcCC----CCc---------ccCCCCccccccccccHHHHHHHHHhc----CCCcHHHHHHHHHHHH
Confidence 6553 111 113455 66689999999999999999 9999999988876443
No 26
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.89 E-value=2.2e-21 Score=174.69 Aligned_cols=199 Identities=15% Similarity=0.154 Sum_probs=149.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc-------------------CCc--------------c
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ-------------------GAF--------------L 60 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~-------------------g~~--------------~ 60 (257)
+|||+|||+|.||.++|.+|+++||+|++||+++++++.++.. |.. .
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 4799999999999999999999999999999999999885421 100 0
Q ss_pred cCCH------------HHHHHH---------------------------HHHhcC--------------ccEEecc--CC
Q 036264 61 ATSP------------QHLAQS---------------------------FAREKD--------------CWAVDAP--VS 85 (257)
Q Consensus 61 ~~s~------------~e~~~~---------------------------~~~~~g--------------~~~~~~p--v~ 85 (257)
..++ .++++. .+.+.+ +.++++| +.
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~ 162 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVL 162 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccC
Confidence 1111 111111 122221 2346667 55
Q ss_pred CCcccccCcceEEEeCC-CHHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 036264 86 GGDIGARDGKLAIFAAG-DSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRK 163 (257)
Q Consensus 86 ~~~~~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~ 163 (257)
++.......+...++|| +++..++++++|+.++. ++++++.+.|+.+|+++|.+.+..+++++|+..+|++.|+|+++
T Consensus 163 ~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD~~~ 242 (415)
T PRK11064 163 PGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINVWE 242 (415)
T ss_pred CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 55555555555677888 99999999999999998 88999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChHHHHhhhhhhccCCCC--CCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHH
Q 036264 164 WMDAIKGGAAGSMAMELYGERMIKKDFR--PGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFS 232 (257)
Q Consensus 164 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~ 232 (257)
+.+.++..... ..+. +|+.-.|+.||...+.+ +. +...++++++.++-+
T Consensus 243 v~~~~~~~~ri-------------~~l~pG~G~GG~ClpkD~~~L~~---~~----~~~~~l~~~a~~~N~ 293 (415)
T PRK11064 243 LIRLANRHPRV-------------NILQPGPGVGGHCIAVDPWFIVA---QN----PQQARLIRTAREVND 293 (415)
T ss_pred HHHHhccCCCc-------------ccCCCCCCCCCccccccHHHHHH---hc----CCccHHHHHHHHHHH
Confidence 99999765421 1122 45666899999987743 45 666788877776533
No 27
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.89 E-value=3e-22 Score=174.14 Aligned_cols=223 Identities=13% Similarity=0.161 Sum_probs=154.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh-hHhHHhh-cCCcccCC----HHHHHHHHHH---hcCccE----
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS-KALHLQS-QGAFLATS----PQHLAQSFAR---EKDCWA---- 79 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~-~~~~l~~-~g~~~~~s----~~e~~~~~~~---~~g~~~---- 79 (257)
..|||+|||+|+||++||..|.++||+|++|+|++. ..+++.+ ..+.+..- ..++++.... ..+..+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 357999999999999999999999999999999853 2223322 22222111 2222222100 112112
Q ss_pred -------------------EeccCC--CCcc-----cccCcceEEEeCCCHHHHHHHHHHHHHhCC-ceEeCC---cch-
Q 036264 80 -------------------VDAPVS--GGDI-----GARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMGE---AGC- 128 (257)
Q Consensus 80 -------------------~~~pv~--~~~~-----~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-~~~~g~---~g~- 128 (257)
.+.|+. .++. ..+.++.+++++++.+.+++++++|+..+. +++.++ ...
T Consensus 83 ~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~ 162 (308)
T PRK14619 83 KGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNSDPLGTELG 162 (308)
T ss_pred CcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCchhhhhH
Confidence 233442 2221 123356788899999999999999999887 776555 122
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChHHHHhhhhhhccCCCCCCcc
Q 036264 129 -------------GQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRPGGF 195 (257)
Q Consensus 129 -------------a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 195 (257)
+..+|+.+|......+.++.|++.++++.|+++++++++ .+.+.++. +.+.+..++|.++|.
T Consensus 163 ~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~--~g~gd~~~---t~~~~~~rn~~~g~~ 237 (308)
T PRK14619 163 GTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL--SGLGDLLA---TCTSPLSRNYQVGYG 237 (308)
T ss_pred HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccc--cchhhhhe---eecCCCCccHHHHHH
Confidence 334458899999999999999999999999999999885 24444433 223445566666655
Q ss_pred cchH----------------HhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCCCCChHHHHHHH
Q 036264 196 AEYM----------------VKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDGKLGTQGLVSVI 251 (257)
Q Consensus 196 ~~~~----------------~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 251 (257)
+..+ .||++++++++++. |+++|++++++++| +++.+...+++.+
T Consensus 238 l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~----~~~~Pl~~~v~~i~-------~~~~~~~~~~~~l 298 (308)
T PRK14619 238 LAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQ----NIAVPITEQVYRLL-------QGEITPQQALEEL 298 (308)
T ss_pred HHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHc----CCCCCHHHHHHHHH-------cCCCCHHHHHHHH
Confidence 5544 89999999999999 99999999999998 4566766666554
No 28
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.87 E-value=1.7e-20 Score=167.24 Aligned_cols=201 Identities=12% Similarity=0.044 Sum_probs=145.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh----------------cCCccc--CCHHHHHHH------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS----------------QGAFLA--TSPQHLAQS------ 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~----------------~g~~~~--~s~~e~~~~------ 70 (257)
|||+|||+|.||.++|..|+ .||+|++||+++++++.+.+ .+.+.+ .++.+++.+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 58999999999999997777 49999999999999998876 222222 223333322
Q ss_pred -----------------------HHH--hcCccEEe-c--c---------------CCCCcccccCcce--------EEE
Q 036264 71 -----------------------FAR--EKDCWAVD-A--P---------------VSGGDIGARDGKL--------AIF 99 (257)
Q Consensus 71 -----------------------~~~--~~g~~~~~-~--p---------------v~~~~~~~~~g~~--------~~~ 99 (257)
.+. ..+..++. . | +.-+|.....|+. .++
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G~a~~d~~~p~rvv 159 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREGKALYDNLHPSRIV 159 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCCcccccccCCCEEE
Confidence 000 11222221 1 1 1114556677777 789
Q ss_pred eCCCHHHHHHHHHHHHH--hCC-ce-EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCh
Q 036264 100 AAGDSAVVQWLTPLFEV--LGK-PT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGS 175 (257)
Q Consensus 100 ~~g~~~~~~~~~~ll~~--~g~-~~-~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s 175 (257)
+|++++..+++.++|.. ++. +. ++++.+.|+.+|+++|.+.++.+++++|+..+|++.|+|.+++.++++..+..+
T Consensus 160 ~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~~d~ri~ 239 (388)
T PRK15057 160 IGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIG 239 (388)
T ss_pred EEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCCCCCC
Confidence 99988888888888854 455 43 789999999999999999999999999999999999999999999998764211
Q ss_pred HHHHhhhhhhccCCCCCCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHH
Q 036264 176 MAMELYGERMIKKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLF 231 (257)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~ 231 (257)
+ ..+. -.+||.-.|+.||+..+...+ . ++++++++++.++=
T Consensus 240 ~-------~~l~--pG~G~GG~ClpkD~~~L~~~~--~----~~~~~l~~~~~~~N 280 (388)
T PRK15057 240 N-------HYNN--PSFGYGGYCLPKDTKQLLANY--Q----SVPNNLISAIVDAN 280 (388)
T ss_pred C-------ccCC--CCCCCCCcChhhhHHHHHHhc--c----CCCcHHHHHHHHHH
Confidence 1 1000 124566789999999886555 4 66788988887653
No 29
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=3.1e-19 Score=151.48 Aligned_cols=211 Identities=20% Similarity=0.250 Sum_probs=165.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc---C--CcccCCHHHHHHH------------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ---G--AFLATSPQHLAQS------------------ 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~---g--~~~~~s~~e~~~~------------------ 70 (257)
.+.||.||++.||..++.|.+.+||.|++|||+.++++++.+. | +....|+++.+..
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD 85 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVD 85 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHH
Confidence 3689999999999999999999999999999999999998754 2 4457889998877
Q ss_pred --------------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhC
Q 036264 71 --------------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG 118 (257)
Q Consensus 71 --------------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g 118 (257)
.+.+.|+-|+.+.|+|+..++..|. .+|.||+.+++..++++|+.++
T Consensus 86 ~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~ifq~ia 164 (487)
T KOG2653|consen 86 QFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDIFQKIA 164 (487)
T ss_pred HHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHHHHHHH
Confidence 5667899999999999999999987 8999999999999999998773
Q ss_pred -------C-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HhhcCCChHHHHhhhhhhc
Q 036264 119 -------K-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADK-AGLDVRKWMDA---IKGGAAGSMAMELYGERMI 186 (257)
Q Consensus 119 -------~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~---~~~~~~~s~~~~~~~~~~~ 186 (257)
+ +.|+|+-|+++.+|+++|.+-++-++.++|+..+.++ .|++.+++.++ ++.+...|.+.+....-+.
T Consensus 165 akv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~dIlk 244 (487)
T KOG2653|consen 165 AKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITADILK 244 (487)
T ss_pred HHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhHHHhh
Confidence 3 7899999999999999999999999999999999998 89998776665 4455566766665543322
Q ss_pred cCCCCCCccc-ch-----HHhhH-HHHHHHHhhcccccCCCCchHH-HHHHH
Q 036264 187 KKDFRPGGFA-EY-----MVKDM-GMGVDVVEESEDERVVVLPGAA-LGKQL 230 (257)
Q Consensus 187 ~~~~~~~~~~-~~-----~~kd~-~~~~~~a~~~~~~~g~~~pi~~-~~~~~ 230 (257)
-.|- .|-.+ +. ..|-. ......|-++ |+|.|++. ++...
T Consensus 245 ~~d~-~G~~lv~kI~D~aGqKGTGkwt~~~Ale~----g~Pv~lI~eavfaR 291 (487)
T KOG2653|consen 245 FKDE-DGKPLVDKILDKAGQKGTGKWTVISALEL----GVPVTLIGEAVFAR 291 (487)
T ss_pred eecc-CCChHHHHHHhhhcCCCccHHHHHHHHHh----CCChHHHHHHHHHH
Confidence 2221 12111 11 11111 1345667788 99998764 44433
No 30
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.82 E-value=8.2e-19 Score=149.56 Aligned_cols=203 Identities=21% Similarity=0.194 Sum_probs=146.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC----eEEEE-eCChhhHhHHhhcCCcccCCHHHHHHH-------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGY----FLTVF-ARNPSKALHLQSQGAFLATSPQHLAQS------------------- 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~----~V~v~-dr~~~~~~~l~~~g~~~~~s~~e~~~~------------------- 70 (257)
|||+|||+|+||.+|+.+|.++|+ +|++| ||++++.+.+.+.|+..++++.+++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~ 80 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTE 80 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHH
Confidence 689999999999999999999998 89999 999999999888888888888777654
Q ss_pred ---------------------HHHh-cCc-cEE-eccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCCceEeCC-
Q 036264 71 ---------------------FARE-KDC-WAV-DAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFMGE- 125 (257)
Q Consensus 71 ---------------------~~~~-~g~-~~~-~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~g~- 125 (257)
.+.. .+. .++ ..|..+.........++...+++++.++.++++|+.+|.++++++
T Consensus 81 l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~e~ 160 (266)
T PLN02688 81 LRPLLSKDKLLVSVAAGITLADLQEWAGGRRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDEK 160 (266)
T ss_pred HHhhcCCCCEEEEecCCCcHHHHHHHcCCCCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHH
Confidence 1111 111 234 245444333333222222223478999999999999999667654
Q ss_pred --------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChHHH-Hhh--hhh-hccCCCCCC
Q 036264 126 --------AGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAM-ELY--GER-MIKKDFRPG 193 (257)
Q Consensus 126 --------~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~-~~~--~~~-~~~~~~~~~ 193 (257)
.|++.+ +.+.++..+.|+ +.+.|+|++++.+++..+..+++.+ ... .+. +.+.-.+|+
T Consensus 161 ~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v~spg 230 (266)
T PLN02688 161 LLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMVTSPG 230 (266)
T ss_pred HcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCc
Confidence 455555 466778888888 8999999999999998877666643 221 222 234444676
Q ss_pred cccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCC
Q 036264 194 GFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANG 238 (257)
Q Consensus 194 ~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g 238 (257)
.++... ++..++. |++-.+.+++.+.++++.+.+
T Consensus 231 G~t~~~-------l~~l~~~----g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 231 GTTIAG-------VHELEKG----GFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred hHHHHH-------HHHHHHC----ChHHHHHHHHHHHHHHHHHhc
Confidence 665543 4677778 999999999999999999875
No 31
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.81 E-value=9.2e-19 Score=149.72 Aligned_cols=227 Identities=12% Similarity=0.091 Sum_probs=168.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc--------------CCcccCCHHHHHHH---------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ--------------GAFLATSPQHLAQS--------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~--------------g~~~~~s~~e~~~~--------- 70 (257)
++||+|||.|.||++||..|+++||+|.+|.|+++..+++.+. ++..++|++++++.
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP 80 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP 80 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence 3689999999999999999999999999999999999988764 24556778888874
Q ss_pred ------------------------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCCHHHHH
Q 036264 71 ------------------------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQ 108 (257)
Q Consensus 71 ------------------------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~ 108 (257)
.+....+.++++|.+......+.++.+.+.+.|.+..+
T Consensus 81 s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~ 160 (329)
T COG0240 81 SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAE 160 (329)
T ss_pred hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHHHHH
Confidence 11112366788898888888888888888888999999
Q ss_pred HHHHHHHHhCC-ceEeCC---c--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 036264 109 WLTPLFEVLGK-PTFMGE---A--------------GCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKG 170 (257)
Q Consensus 109 ~~~~ll~~~g~-~~~~g~---~--------------g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 170 (257)
+++.+|..--. ++...+ + |....+++..|.-.++++.++.|+.+++.++|-++++++.+..-
T Consensus 161 ~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsGl 240 (329)
T COG0240 161 KVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLSGL 240 (329)
T ss_pred HHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhcccccc
Confidence 99999987333 433333 1 33344557899999999999999999999999999998887655
Q ss_pred cC----CChHHHHhhh-hhhccCCCCC------CcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCC
Q 036264 171 GA----AGSMAMELYG-ERMIKKDFRP------GGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGD 239 (257)
Q Consensus 171 ~~----~~s~~~~~~~-~~~~~~~~~~------~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~ 239 (257)
+. ..|...+++. ..++.+..+. ...+....+..+.+.+.++++ ++++|+++++++++.
T Consensus 241 GDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~----~i~mPI~~~Vy~vl~------- 309 (329)
T COG0240 241 GDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKL----GIEMPITEAVYRVLY------- 309 (329)
T ss_pred cceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHc----CCCCCHHHHHHHHHh-------
Confidence 53 3444344432 1222222211 133455778888999999999 999999999999885
Q ss_pred CCCChHHHHHHH
Q 036264 240 GKLGTQGLVSVI 251 (257)
Q Consensus 240 g~~d~~~~~~~~ 251 (257)
++.+...++..+
T Consensus 310 ~~~~~~~~~~~L 321 (329)
T COG0240 310 EGLDPKEAIEEL 321 (329)
T ss_pred CCCCHHHHHHHH
Confidence 344544444444
No 32
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.78 E-value=3.8e-18 Score=146.41 Aligned_cols=204 Identities=18% Similarity=0.212 Sum_probs=144.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC----CeEEEEeCCh-hhHhHHhhc-CCcccCCHHHHHHH-----------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG----YFLTVFARNP-SKALHLQSQ-GAFLATSPQHLAQS----------------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g----~~V~v~dr~~-~~~~~l~~~-g~~~~~s~~e~~~~----------------- 70 (257)
.|||+|||+|+||.+|+.+|.++| ++|++|||++ ++.+.+.+. |+....++.++++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl 82 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEAL 82 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHHH
Confidence 479999999999999999999998 7899999976 467777654 77777788777655
Q ss_pred -HHH---hcCccEEe-----------------ccCCCCc---ccccCcceEEEeCCC---HHHHHHHHHHHHHhCCceEe
Q 036264 71 -FAR---EKDCWAVD-----------------APVSGGD---IGARDGKLAIFAAGD---SAVVQWLTPLFEVLGKPTFM 123 (257)
Q Consensus 71 -~~~---~~g~~~~~-----------------~pv~~~~---~~~~~g~~~~~~~g~---~~~~~~~~~ll~~~g~~~~~ 123 (257)
.+. ..+..+++ +|+.+.. ..+..+.++++++++ ++.++.++++|+.+|.++++
T Consensus 83 ~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v 162 (279)
T PRK07679 83 IPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLVSVV 162 (279)
T ss_pred HHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcEEEe
Confidence 111 11222222 2343331 133334456776765 67889999999999994443
Q ss_pred ---------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCh-HHHH--hhhhhhccCCC-
Q 036264 124 ---------GEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGS-MAME--LYGERMIKKDF- 190 (257)
Q Consensus 124 ---------g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s-~~~~--~~~~~~~~~~~- 190 (257)
+..|++.+ +.+..+..+.|+ +++.|+|+++..+++..+..++ .++. .+.+..+.+++
T Consensus 163 ~e~~~~~~~a~~Gsgpa-------~~~~~~eal~e~---~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l~~~v~ 232 (279)
T PRK07679 163 EEEDMHAVTALSGSGPA-------YIYYVVEAMEKA---AKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILRKEIT 232 (279)
T ss_pred CHHHhhhHHHhhcCHHH-------HHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcC
Confidence 33455544 344444455554 8999999999999998865444 4444 35666677777
Q ss_pred CCCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCC
Q 036264 191 RPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANG 238 (257)
Q Consensus 191 ~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g 238 (257)
+|++++..++ +..++. |++--+.+++.+.++++.+.|
T Consensus 233 spgg~t~~gl-------~~l~~~----~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 233 SPGGTTEAGI-------EVLQEH----RFQQALISCITQATQRSHNLG 269 (279)
T ss_pred CCchHHHHHH-------HHHHHC----ChHHHHHHHHHHHHHHHHHHH
Confidence 7888877654 556667 999999999999999998875
No 33
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.78 E-value=1e-17 Score=147.67 Aligned_cols=216 Identities=21% Similarity=0.190 Sum_probs=146.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcc-----------------cCCHHHHHHH------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL-----------------ATSPQHLAQS------ 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~-----------------~~s~~e~~~~------ 70 (257)
+|||+|||+|.||+.+|..|+++||+|++|+|++. .+.+.+.|... .+++ +.+..
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil 79 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLV 79 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEE
Confidence 47899999999999999999999999999999753 46666554322 2222 22211
Q ss_pred -----------------------------------HHHhc--CccEEec--c---CCCCccc---ccCcceEEEeCCCHH
Q 036264 71 -----------------------------------FAREK--DCWAVDA--P---VSGGDIG---ARDGKLAIFAAGDSA 105 (257)
Q Consensus 71 -----------------------------------~~~~~--g~~~~~~--p---v~~~~~~---~~~g~~~~~~~g~~~ 105 (257)
.+... ...++++ | +..++.. ...+++.+ + +.+
T Consensus 80 ~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~--~-~~~ 156 (341)
T PRK08229 80 TVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAI--E-ASP 156 (341)
T ss_pred EecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEe--c-CCc
Confidence 11110 1122332 1 1111111 11333222 2 234
Q ss_pred HHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHcCCCHHHH
Q 036264 106 VVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGAN--------------------LLGLSEGLVFADKAGLDVRKW 164 (257)
Q Consensus 106 ~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~--------------------~~~~~Ea~~l~~~~G~~~~~~ 164 (257)
.++++.++|+..+. +++.++++.....|++.|.+.... ...+.|++.++++.|++++.+
T Consensus 157 ~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~Gi~~~~~ 236 (341)
T PRK08229 157 ALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAGIRPARL 236 (341)
T ss_pred hHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 56889999999888 999999999999999999744433 378999999999999998765
Q ss_pred HHHHhhc-----CCChHHHHhhhhhhccCCCCCCcccchHHhhHH------------HHHHHHhhcccccCCCCchHHHH
Q 036264 165 MDAIKGG-----AAGSMAMELYGERMIKKDFRPGGFAEYMVKDMG------------MGVDVVEESEDERVVVLPGAALG 227 (257)
Q Consensus 165 ~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~~~~~a~~~~~~~g~~~pi~~~~ 227 (257)
.++...+ ...++.+......+...++.+ ...+.+|+. ++++.|+++ |+++|..+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~----gv~~P~~~~~ 309 (341)
T PRK08229 237 TPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAGRL----GAPAPVNARL 309 (341)
T ss_pred CCCChhhhhhhhcCChHHHHHHHHHhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHHHc----CCCCcHHHHH
Confidence 4433322 234555555555555554432 245889998 699999999 9999999999
Q ss_pred HHHHHHHHHCCCCC
Q 036264 228 KQLFSAMVANGDGK 241 (257)
Q Consensus 228 ~~~~~~a~~~g~g~ 241 (257)
+++++...+.|...
T Consensus 310 ~~~~~~~~~~~~~~ 323 (341)
T PRK08229 310 CALVHEAERAGARP 323 (341)
T ss_pred HHHHHHHHhCCCcC
Confidence 99999998887544
No 34
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=1e-16 Score=139.14 Aligned_cols=200 Identities=17% Similarity=0.102 Sum_probs=149.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcC--------------------CcccCCHHHHHHH----
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQG--------------------AFLATSPQHLAQS---- 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g--------------------~~~~~s~~e~~~~---- 70 (257)
|||+|||+|.+|...+..|++.||+|+..|.+++|++.+++.. .+.++|.++++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 7999999999999999999999999999999999998887642 2334445554443
Q ss_pred ----------------------------------------------------HHH----hcCccEEeccCCCCcccccCc
Q 036264 71 ----------------------------------------------------FAR----EKDCWAVDAPVSGGDIGARDG 94 (257)
Q Consensus 71 ----------------------------------------------------~~~----~~g~~~~~~pv~~~~~~~~~g 94 (257)
.+. .+.+.++..|- ....|
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPE-----FLREG 155 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPE-----FLREG 155 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChH-----HhcCc
Confidence 000 01122333332 22222
Q ss_pred ce--------EEEeCCC-HHHHHHHHHHHHHh--CC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 036264 95 KL--------AIFAAGD-SAVVQWLTPLFEVL--GK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVR 162 (257)
Q Consensus 95 ~~--------~~~~~g~-~~~~~~~~~ll~~~--g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~ 162 (257)
.. -+++|.. +.+.+.+++++..+ .. .+.+.+...+++.|++.|.+.++-+..++|...+|++.|+|..
T Consensus 156 ~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~ 235 (414)
T COG1004 156 SAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVK 235 (414)
T ss_pred chhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 11 3666764 44678888888775 23 7777788999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCChHHHHhhhhhhccCCCCCCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHH
Q 036264 163 KWMDAIKGGAAGSMAMELYGERMIKKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFS 232 (257)
Q Consensus 163 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~ 232 (257)
++.+.++...-.++ +.++- ..||.-.|+.||.+.++..++++ |.+.++++++.++-+
T Consensus 236 ~V~~gIGlD~RIG~-------~fl~a--G~GyGGsCfPKD~~AL~~~a~~~----~~~~~ll~avv~vN~ 292 (414)
T COG1004 236 QVAEGIGLDPRIGN-------HFLNA--GFGYGGSCFPKDTKALIANAEEL----GYDPNLLEAVVEVNE 292 (414)
T ss_pred HHHHHcCCCchhhH-------hhCCC--CCCCCCcCCcHhHHHHHHHHHhc----CCchHHHHHHHHHHH
Confidence 99999877643221 11111 24677789999999999999999 999999998876543
No 35
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.72 E-value=4.4e-16 Score=143.47 Aligned_cols=150 Identities=18% Similarity=0.189 Sum_probs=116.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh-------------------cC-CcccCCHHHHHHH----
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS-------------------QG-AFLATSPQHLAQS---- 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~-------------------~g-~~~~~s~~e~~~~---- 70 (257)
|||+|||+|.||.+||.+|+++|++|++||+++++.+.+.+ .+ +..++++++++++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 58999999999999999999999999999999998766532 12 5567777776644
Q ss_pred ------------------------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCC---HH
Q 036264 71 ------------------------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGD---SA 105 (257)
Q Consensus 71 ------------------------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~---~~ 105 (257)
.+...+..+++.|+.+. ..+.++.+++|+ ++
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv~g~~t~~e 160 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPV----YLLPLVELVGGGKTSPE 160 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCc----ccCceEEEcCCCCCCHH
Confidence 11123345666676522 123567888885 79
Q ss_pred HHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhhcCCChH
Q 036264 106 VVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLG-LSEGLVFADKAGLDVRKWMDAIKGGAAGSM 176 (257)
Q Consensus 106 ~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~-~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~ 176 (257)
.+++++++|+.+|+ +++++ |.+.|++..-+..+ +.|++.++++.|++++++.+++..+.+.+|
T Consensus 161 ~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~ 225 (495)
T PRK07531 161 TIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRW 225 (495)
T ss_pred HHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc
Confidence 99999999999999 88887 45666666666666 599999999999999999999998876654
No 36
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=5.1e-16 Score=134.43 Aligned_cols=159 Identities=17% Similarity=0.250 Sum_probs=118.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcc-cCCHHHHHHH----------------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL-ATSPQHLAQS---------------------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~-~~s~~e~~~~---------------------- 70 (257)
.++|+|||+|.+|.++|..++++|++|+++|.++.+++.+++..... ..+++++++.
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~ 88 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVF 88 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEE
Confidence 37999999999999999999999999999999999999987643222 2233332222
Q ss_pred -----------------------------------------------------HHHh-cCc----c--EEecc--CCCCc
Q 036264 71 -----------------------------------------------------FARE-KDC----W--AVDAP--VSGGD 88 (257)
Q Consensus 71 -----------------------------------------------------~~~~-~g~----~--~~~~p--v~~~~ 88 (257)
.++. .|. . ..-+| +.++.
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~PG~ 168 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGN 168 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccCCCc
Confidence 1121 111 1 12233 22222
Q ss_pred ccccCcceEEEeCC-CHHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 036264 89 IGARDGKLAIFAAG-DSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMD 166 (257)
Q Consensus 89 ~~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~ 166 (257)
...+--+..=++|| +++..+.++.+++.+-. ++.+.+...|++.|+..|.+..+++++.+|...+|+++|+|..++++
T Consensus 169 ~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevIe 248 (436)
T COG0677 169 VLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVIE 248 (436)
T ss_pred hhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 22222122334455 78888999999999988 88999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 036264 167 AIKGGA 172 (257)
Q Consensus 167 ~~~~~~ 172 (257)
+.+..+
T Consensus 249 aAnt~P 254 (436)
T COG0677 249 AANTKP 254 (436)
T ss_pred HhccCC
Confidence 988764
No 37
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.69 E-value=9.3e-15 Score=133.18 Aligned_cols=203 Identities=13% Similarity=0.059 Sum_probs=141.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC--CeEEEEeCChhhHhHHhhcCCc-------------------ccCCHHHHHHH--
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG--YFLTVFARNPSKALHLQSQGAF-------------------LATSPQHLAQS-- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g--~~V~v~dr~~~~~~~l~~~g~~-------------------~~~s~~e~~~~-- 70 (257)
+|||+|||+|++|.++|..|+++| ++|+++|+++++++.+++.+.. .+++..+++..
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 479999999999999999999985 7899999999999887644211 22222222211
Q ss_pred -----------------------------------------------------------HHHh--cC--ccEEeccCCCC
Q 036264 71 -----------------------------------------------------------FARE--KD--CWAVDAPVSGG 87 (257)
Q Consensus 71 -----------------------------------------------------------~~~~--~g--~~~~~~pv~~~ 87 (257)
.+.+ .| +.+..+|-+-.
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~ 160 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLA 160 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccC
Confidence 1111 12 22334442211
Q ss_pred ccccc---CcceEEEeCCC-----HHHHHHHHHHHHHhCC--ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 036264 88 DIGAR---DGKLAIFAAGD-----SAVVQWLTPLFEVLGK--PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKA 157 (257)
Q Consensus 88 ~~~~~---~g~~~~~~~g~-----~~~~~~~~~ll~~~g~--~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~ 157 (257)
+-.+. ...-.+++|+. +++.++++.+++.+.. ++.+.+...+++.|++.|.+.++.++.++|...+|++.
T Consensus 161 ~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~ 240 (473)
T PLN02353 161 EGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (473)
T ss_pred CCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11100 00113556763 3457888999998863 77778899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCChHHHHhhhhhhccCCCCCCcccchHHhhHHHHHHHHhhcccccCCC--CchHHHHHH
Q 036264 158 GLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVV--LPGAALGKQ 229 (257)
Q Consensus 158 G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~--~pi~~~~~~ 229 (257)
|+|..++.+.++.....++ ..+. -.+|+.-.|+.||...+...+++. |++ .++++++.+
T Consensus 241 giD~~eV~~~~~~d~rig~-------~~l~--PG~G~GG~ClpkD~~~L~~~a~~~----g~~~~~~l~~~~~~ 301 (473)
T PLN02353 241 GADVSQVSHAVGKDSRIGP-------KFLN--ASVGFGGSCFQKDILNLVYICECN----GLPEVAEYWKQVIK 301 (473)
T ss_pred CCCHHHHHHHhCCCCcCCC-------CCCC--CCCCCCCcchhhhHHHHHHHHHHc----CCchHHHHHHHHHH
Confidence 9999999999887542111 1110 113556689999999999999999 987 667766554
No 38
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.68 E-value=2.6e-15 Score=126.24 Aligned_cols=211 Identities=20% Similarity=0.184 Sum_probs=142.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC----CeEEEEeCChhhHhHHhh-cCCcccCCHHHHHHH------------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG----YFLTVFARNPSKALHLQS-QGAFLATSPQHLAQS------------------ 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g----~~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~------------------ 70 (257)
+|||+|||+|+||++|+..|.++| .+|++.||++++.+.+.+ .|+..+++.++++..
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl~ 80 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVLS 80 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhHHHHHH
Confidence 368999999999999999999999 589999999999986654 466656667777765
Q ss_pred HHHh--cCccEE----------------eccCC----CCcccccCcceEEEeCC--CHHHHHHHHHHHHHhCCceEeCCc
Q 036264 71 FARE--KDCWAV----------------DAPVS----GGDIGARDGKLAIFAAG--DSAVVQWLTPLFEVLGKPTFMGEA 126 (257)
Q Consensus 71 ~~~~--~g~~~~----------------~~pv~----~~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~~g~~~~~g~~ 126 (257)
.+.. .+..++ +.|+. ..+.....|...+..+. +++..+.++.+|+.+|.++++.+.
T Consensus 81 ~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~E~ 160 (266)
T COG0345 81 KLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVEES 160 (266)
T ss_pred HhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEEechH
Confidence 1111 111111 11211 12334445554444433 678888999999999998888873
Q ss_pred c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChH-HHHhhhh---hhccCCCCCCcccchHH
Q 036264 127 G--CGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSM-AMELYGE---RMIKKDFRPGGFAEYMV 200 (257)
Q Consensus 127 g--~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~~~~~---~~~~~~~~~~~~~~~~~ 200 (257)
- ...++--+...+.+.++..+.++ +.+.|+++++.++++.+...++. ++..... .+..+-.+||.++...+
T Consensus 161 ~~da~TaisGSgPAyv~~~iEal~~a---gv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~VtSPGGtTiagl 237 (266)
T COG0345 161 LMDAVTALSGSGPAYVFLFIEALADA---GVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQVTSPGGTTIAGL 237 (266)
T ss_pred HhhHHHHHhcCCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCcCCCchHHHHH
Confidence 2 22222222333555555555555 78999999999998887654333 4444333 34555567888877666
Q ss_pred hhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCC
Q 036264 201 KDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANG 238 (257)
Q Consensus 201 kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g 238 (257)
+++ ++. |++--+.+++.+.++++.+.|
T Consensus 238 ~~l-------e~~----g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 238 RVL-------EED----GFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred HHH-------HHh----ChHHHHHHHHHHHHHHHHHhc
Confidence 444 466 899999999999999988865
No 39
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.67 E-value=5.9e-15 Score=125.97 Aligned_cols=210 Identities=17% Similarity=0.163 Sum_probs=143.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC----eEEEEeCChhhHhHHhh-cCCcccCCHHHHHHH------------------H
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGY----FLTVFARNPSKALHLQS-QGAFLATSPQHLAQS------------------F 71 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~----~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~------------------~ 71 (257)
+||+|||+|+||.+|+.+|.++|+ +|++|||++++.+.+.+ .|+..+++..+++.+ .
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~~ 82 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVINQ 82 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHHHH
Confidence 689999999999999999999885 69999999999998875 677777777777655 1
Q ss_pred HH---hcCccEEec-----------------cC----CCCcccccCcceEEEeCC--CHHHHHHHHHHHHHhCCceEeCC
Q 036264 72 AR---EKDCWAVDA-----------------PV----SGGDIGARDGKLAIFAAG--DSAVVQWLTPLFEVLGKPTFMGE 125 (257)
Q Consensus 72 ~~---~~g~~~~~~-----------------pv----~~~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~~g~~~~~g~ 125 (257)
+. ..+..+++. ++ ...+...+.|...+..+. +++..+.++.+|+.+|.++++.+
T Consensus 83 l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~E 162 (272)
T PRK12491 83 IKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVVNE 162 (272)
T ss_pred HHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEEEcH
Confidence 11 011111110 11 112334445543444333 46778899999999999777766
Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChH-HHHhh--hh-hhccCCCCCCcccchH
Q 036264 126 --AGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSM-AMELY--GE-RMIKKDFRPGGFAEYM 199 (257)
Q Consensus 126 --~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~~~--~~-~~~~~~~~~~~~~~~~ 199 (257)
.....++--+...+.+.++..+.++ +.+.|+++++..+++.+...++. ++... .+ .+.+.-.+||.++..+
T Consensus 163 ~~~d~~talsgsgPAf~~~~~eal~~a---~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V~sPGGtT~~g 239 (272)
T PRK12491 163 KLMDVVTSISGSSPAYVYMFIEAMADA---AVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIEA 239 (272)
T ss_pred HHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchHHHHH
Confidence 3333333334455767677777766 78899999999998877654333 33222 22 2344555788777655
Q ss_pred HhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCC
Q 036264 200 VKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANG 238 (257)
Q Consensus 200 ~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g 238 (257)
+ +..++. |++--+.+++.+.++++.+.|
T Consensus 240 l-------~~le~~----~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 240 V-------ATLEEK----GLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred H-------HHHHHC----ChHHHHHHHHHHHHHHHHHHH
Confidence 4 666777 999999999999999988754
No 40
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.64 E-value=1.2e-14 Score=128.18 Aligned_cols=234 Identities=10% Similarity=0.066 Sum_probs=155.2
Q ss_pred CCCCCCCCCeEEEEcCChhHHHHHHHHHHCC-------CeEEEEeCChh-----hHhHHhhc--------------CCcc
Q 036264 7 TTPISPSTTRIGWIGIGLMGSPMASRLLAAG-------YFLTVFARNPS-----KALHLQSQ--------------GAFL 60 (257)
Q Consensus 7 ~~~~~~~~~~IgvIG~G~mG~~la~~L~~~g-------~~V~v~dr~~~-----~~~~l~~~--------------g~~~ 60 (257)
|+..+...+||+|||.|+||+++|..|+++| |+|.+|.|+++ ..+.+++. ++..
T Consensus 4 ~~~~~~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~ 83 (365)
T PTZ00345 4 FQKLRCGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVA 83 (365)
T ss_pred hhhcccCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEE
Confidence 4455566789999999999999999999998 89999999986 36666543 2344
Q ss_pred cCCHHHHHHH------------------HHHh------------------------------------cCccEEeccCCC
Q 036264 61 ATSPQHLAQS------------------FARE------------------------------------KDCWAVDAPVSG 86 (257)
Q Consensus 61 ~~s~~e~~~~------------------~~~~------------------------------------~g~~~~~~pv~~ 86 (257)
++++++++++ .+.. ..+.++.+|.+.
T Consensus 84 tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A 163 (365)
T PTZ00345 84 VSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVA 163 (365)
T ss_pred ecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHH
Confidence 6677777765 1110 122334556555
Q ss_pred CcccccCcceEEEeCCCHHHHHHHHHHHHHhCC-ceEeCC---cchH--------------HHHHHHHHHHHHHHHHHHH
Q 036264 87 GDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMGE---AGCG--------------QSCKIANQIVVGANLLGLS 148 (257)
Q Consensus 87 ~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-~~~~g~---~g~a--------------~~~kl~~n~~~~~~~~~~~ 148 (257)
.....+..+.+++++.|.+..+.++.+|+.--- ++...+ +..+ ..+++..|...+++..++.
T Consensus 164 ~Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~ 243 (365)
T PTZ00345 164 NDVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLE 243 (365)
T ss_pred HHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 556666677677778888888999999975333 333333 2223 3334578999999999999
Q ss_pred HHHHHHHHcC--CCHHHHHHHHhhcCC--ChHHHHhh--hhhhccCC--CC--C---C---cccchHHhhHHHHHHHHhh
Q 036264 149 EGLVFADKAG--LDVRKWMDAIKGGAA--GSMAMELY--GERMIKKD--FR--P---G---GFAEYMVKDMGMGVDVVEE 212 (257)
Q Consensus 149 Ea~~l~~~~G--~~~~~~~~~~~~~~~--~s~~~~~~--~~~~~~~~--~~--~---~---~~~~~~~kd~~~~~~~a~~ 212 (257)
|+.++++++| .++++++++..-+.. .+...+++ +..+..+. .+ . . ..+-.+..-...+.+++++
T Consensus 244 Em~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~ 323 (365)
T PTZ00345 244 EMKLFGKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLES 323 (365)
T ss_pred HHHHHHHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHH
Confidence 9999999996 488999886554421 11112222 22222221 11 0 0 1223356667788899999
Q ss_pred cccccCC--CCchHHHHHHHHHHHHHCCCCCCChHHHHHHH
Q 036264 213 SEDERVV--VLPGAALGKQLFSAMVANGDGKLGTQGLVSVI 251 (257)
Q Consensus 213 ~~~~~g~--~~pi~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 251 (257)
. ++ ++|+++++++++ +++.+...+++.+
T Consensus 324 ~----~i~~~~Pi~~~vy~il-------~~~~~~~~~~~~l 353 (365)
T PTZ00345 324 H----DLKKEFPLFTVTYKIA-------FEGADPSSLIDVL 353 (365)
T ss_pred c----CCCCCCCHHHHHHHHH-------hCCCCHHHHHHHH
Confidence 9 99 899999999998 4555555555544
No 41
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.60 E-value=5.7e-14 Score=119.25 Aligned_cols=202 Identities=16% Similarity=0.175 Sum_probs=126.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCe---EEEEeCChhhHhHHhhc--CCcccCCHHHHHHH---------------HHHh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYF---LTVFARNPSKALHLQSQ--GAFLATSPQHLAQS---------------FARE 74 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~---V~v~dr~~~~~~~l~~~--g~~~~~s~~e~~~~---------------~~~~ 74 (257)
|||||||+|+||.+|+.+|.+.|++ +.+|+|++++.+++.+. ++..+.++.+++.+ .+..
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~ 80 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRA 80 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence 5899999999999999999999864 58999999999888775 46677788877655 0100
Q ss_pred ----cC-----------------------ccEEeccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCCceEeCCcc
Q 036264 75 ----KD-----------------------CWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFMGEAG 127 (257)
Q Consensus 75 ----~g-----------------------~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~g~~g 127 (257)
.+ ..+...|+.. .....+ ++.++.++ +.++++|+.+|.++++++..
T Consensus 81 l~~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~--~a~~~g-~t~~~~~~----~~~~~l~~~lG~~~~~~~e~ 153 (258)
T PRK06476 81 LRFRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPF--VAERKG-VTAIYPPD----PFVAALFDALGTAVECDSEE 153 (258)
T ss_pred hccCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCCh--hhhCCC-CeEecCCH----HHHHHHHHhcCCcEEECChH
Confidence 11 1223334321 112223 24444443 57899999999955565421
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChH-H-HHhh--h-hhhccCCCCCCcccchHHhh
Q 036264 128 CGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSM-A-MELY--G-ERMIKKDFRPGGFAEYMVKD 202 (257)
Q Consensus 128 ~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~-~~~~--~-~~~~~~~~~~~~~~~~~~kd 202 (257)
.-..+..+.. ..+.....+.++..++++.|+|+++..+++.....++. + .... . ..+.+.-.+|+.++...+
T Consensus 154 ~~d~~~a~~s-~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spgGtT~~gl-- 230 (258)
T PRK06476 154 EYDLLAAASA-LMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKGGLNEQVL-- 230 (258)
T ss_pred hccceeehhc-cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCCchHHHHH--
Confidence 1111100111 22233346788888999999999999998876543333 2 1211 1 123444457877766544
Q ss_pred HHHHHHHHhhcccccCCCCchHHHHHHHHHHHH
Q 036264 203 MGMGVDVVEESEDERVVVLPGAALGKQLFSAMV 235 (257)
Q Consensus 203 ~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~ 235 (257)
+..++. |++-.+.+++...++++.
T Consensus 231 -----~~le~~----~~~~~~~~a~~aa~~r~~ 254 (258)
T PRK06476 231 -----NDFSRQ----GGYAALTDALDRVLRRIN 254 (258)
T ss_pred -----HHHHHC----ChHHHHHHHHHHHHHHhh
Confidence 556667 887777777777776654
No 42
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.60 E-value=1.6e-14 Score=127.36 Aligned_cols=226 Identities=15% Similarity=0.064 Sum_probs=145.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcC---------------CcccCCHHHHHHH--------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQG---------------AFLATSPQHLAQS-------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g---------------~~~~~s~~e~~~~-------- 70 (257)
+|||+|||+|+||+++|..|+++| +|++|.|+++..+.+++.+ +...+++++++..
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilav 85 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGV 85 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEe
Confidence 479999999999999999999999 6889999999988887542 1234556665544
Q ss_pred ---------------------------------------HHHh----cCccEEeccCCCCcccccCcceEEEeCCCHHHH
Q 036264 71 ---------------------------------------FARE----KDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVV 107 (257)
Q Consensus 71 ---------------------------------------~~~~----~g~~~~~~pv~~~~~~~~~g~~~~~~~g~~~~~ 107 (257)
.+.+ ....++..|.+......+..+..++.+.+++..
T Consensus 86 ps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~~ 165 (341)
T PRK12439 86 PSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPDQHLA 165 (341)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeCCHHHH
Confidence 0111 011123334332222333333345555677888
Q ss_pred HHHHHHHHHhCC-ceEeCCcchHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036264 108 QWLTPLFEVLGK-PTFMGEAGCGQ-----------------SCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIK 169 (257)
Q Consensus 108 ~~~~~ll~~~g~-~~~~g~~g~a~-----------------~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 169 (257)
+.++.+|+.-+- ++...++-... .+++..|.....+..++.|+.+++++.|.++++++++..
T Consensus 166 ~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G 245 (341)
T PRK12439 166 TRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFAGLAG 245 (341)
T ss_pred HHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccccccch
Confidence 889999987665 55555532222 223456677677889999999999999999999988655
Q ss_pred hcC----CChHHHHhh--hhhhccCCCCC-----CcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCC
Q 036264 170 GGA----AGSMAMELY--GERMIKKDFRP-----GGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANG 238 (257)
Q Consensus 170 ~~~----~~s~~~~~~--~~~~~~~~~~~-----~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g 238 (257)
-+. ..|...+++ +..+..+.... -..+-.+..-...+.++++++ ++++|+++++++++
T Consensus 246 ~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~----~~~~Pi~~~~~~il------- 314 (341)
T PRK12439 246 MGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEY----GLNMPIAREVDAVI------- 314 (341)
T ss_pred hhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHh----CCCCCHHHHHHHHH-------
Confidence 442 222222222 22222221100 012334667777889999999 99999999999998
Q ss_pred CCCCChHHHHHHH
Q 036264 239 DGKLGTQGLVSVI 251 (257)
Q Consensus 239 ~g~~d~~~~~~~~ 251 (257)
+++.|...+++.+
T Consensus 315 ~~~~~~~~~~~~l 327 (341)
T PRK12439 315 NHGSTVEQAYRGL 327 (341)
T ss_pred hCCCCHHHHHHHH
Confidence 4566666665554
No 43
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.59 E-value=1.6e-13 Score=117.06 Aligned_cols=208 Identities=22% Similarity=0.172 Sum_probs=131.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC---CeEEEEeCChhhHhHHhhc-CCcccCCHHHHHHH------------------H
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG---YFLTVFARNPSKALHLQSQ-GAFLATSPQHLAQS------------------F 71 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g---~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~------------------~ 71 (257)
+|||+|||+|+||+.++..|.++| ++|.+|+|++++.+.+.+. |+....+.++++.. .
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~~~~v~~~ 81 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEEVLSE 81 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHHHHHHHHH
Confidence 478999999999999999999999 7899999999999888875 77666777766544 1
Q ss_pred HHh-----------------------cCccEEec-cCCCCcccccCcceEEEeCC--CHHHHHHHHHHHHHhCCceEeCC
Q 036264 72 ARE-----------------------KDCWAVDA-PVSGGDIGARDGKLAIFAAG--DSAVVQWLTPLFEVLGKPTFMGE 125 (257)
Q Consensus 72 ~~~-----------------------~g~~~~~~-pv~~~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~~g~~~~~g~ 125 (257)
+.. .+..++.. |. .+.....+...+..+. +++.++.++.+|+.+|.++++.+
T Consensus 82 l~~~~~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~--~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~~~~~~~ 159 (267)
T PRK11880 82 LKGQLDKLVVSIAAGVTLARLERLLGADLPVVRAMPN--TPALVGAGMTALTANALVSAEDRELVENLLSAFGKVVWVDD 159 (267)
T ss_pred HHhhcCCEEEEecCCCCHHHHHHhcCCCCcEEEecCC--chHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCeEEEECC
Confidence 111 01112211 21 1222333333344443 78899999999999999666663
Q ss_pred -c--chHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhhcCCCh-HHHHhh--hhh-hccCCCCCCcccc
Q 036264 126 -A--GCGQSCKIANQIVVGANLLGLSEGLV-FADKAGLDVRKWMDAIKGGAAGS-MAMELY--GER-MIKKDFRPGGFAE 197 (257)
Q Consensus 126 -~--g~a~~~kl~~n~~~~~~~~~~~Ea~~-l~~~~G~~~~~~~~~~~~~~~~s-~~~~~~--~~~-~~~~~~~~~~~~~ 197 (257)
. .....+--+...+.+ .+.|++. .+.+.|+++++..+++.....+. .++... .+. +...-.+|+.+++
T Consensus 160 e~~~d~~~a~~~~~pa~~~----~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~tpgG~t~ 235 (267)
T PRK11880 160 EKQMDAVTAVSGSGPAYVF----LFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDNVTSPGGTTI 235 (267)
T ss_pred hHhcchHHHHhcChHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCcHHHH
Confidence 2 222221111122222 2333333 36779999999888877653222 222211 111 1223334555544
Q ss_pred hHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCC
Q 036264 198 YMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANG 238 (257)
Q Consensus 198 ~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g 238 (257)
. .++..++. |++-.+.+++.+.++++.+.+
T Consensus 236 ~-------gl~~l~~~----g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 236 A-------ALRVLEEK----GLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred H-------HHHHHHHC----CHHHHHHHHHHHHHHHHHHhc
Confidence 4 44777778 999999999999999999874
No 44
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.59 E-value=5e-14 Score=129.90 Aligned_cols=141 Identities=21% Similarity=0.218 Sum_probs=105.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHH-----------hhcC-------------CcccCCHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHL-----------QSQG-------------AFLATSPQHLAQ 69 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~~ 69 (257)
..||+|||+|.||..||.+|+++||+|++||++++.+++. .+.| +..+.+++++..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~~ 86 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLAD 86 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhCC
Confidence 3589999999999999999999999999999999988773 4445 455666655431
Q ss_pred H-------------------HHHh------------------------------cCccEEe-ccCCCCcccccCcceEEE
Q 036264 70 S-------------------FARE------------------------------KDCWAVD-APVSGGDIGARDGKLAIF 99 (257)
Q Consensus 70 ~-------------------~~~~------------------------------~g~~~~~-~pv~~~~~~~~~g~~~~~ 99 (257)
. .+.. .|.+|++ +|++ .++.+
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~---------~LvEv 157 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLM---------KLVEV 157 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccC---------eeEEE
Confidence 1 0000 1333443 3332 46777
Q ss_pred eCC---CHHHHHHHHHHHHHhCC-ceEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036264 100 AAG---DSAVVQWLTPLFEVLGK-PTFMGE-AGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGA 172 (257)
Q Consensus 100 ~~g---~~~~~~~~~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~ 172 (257)
++| ++++++++.++++.+++ ++++++ .| ++.|-+. ...+.|++.++++.+.+++++.+++..+.
T Consensus 158 v~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll---~~~~~Ea~~l~~~g~~~~~~iD~al~~~~ 226 (507)
T PRK08268 158 VSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAA---RPYYTEALRVLEEGVADPATIDAILREAA 226 (507)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 775 89999999999999999 889987 56 2444433 34899999999999999999999987644
No 45
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.58 E-value=1.1e-13 Score=121.37 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=116.3
Q ss_pred CeEEEEcCChh--------------------HHHHHHHHHHCCCeEEEEeCChh-----hHhHHhhcCCcccCCHHHHHH
Q 036264 15 TRIGWIGIGLM--------------------GSPMASRLLAAGYFLTVFARNPS-----KALHLQSQGAFLATSPQHLAQ 69 (257)
Q Consensus 15 ~~IgvIG~G~m--------------------G~~la~~L~~~g~~V~v~dr~~~-----~~~~l~~~g~~~~~s~~e~~~ 69 (257)
|||.|.|.||- |.+||.+|+++||+|++|||+++ +.+.+.+.|+.+++++.+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 68999999974 88999999999999999999987 455677778887778777765
Q ss_pred H-------------------HHH---hcCccEEec--------------------------cC-CCCcccccCcceEEEe
Q 036264 70 S-------------------FAR---EKDCWAVDA--------------------------PV-SGGDIGARDGKLAIFA 100 (257)
Q Consensus 70 ~-------------------~~~---~~g~~~~~~--------------------------pv-~~~~~~~~~g~~~~~~ 100 (257)
+ .+. ..+..+++. ++ .+.+.+...+.+.++.
T Consensus 81 ~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~ 160 (342)
T PRK12557 81 HGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIA 160 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEe
Confidence 4 000 011111111 00 0111222344455666
Q ss_pred CC--------CHHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 036264 101 AG--------DSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKG 170 (257)
Q Consensus 101 ~g--------~~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 170 (257)
++ +++.+++++++|+.+|. +++++ .|.+..+|+++|++.+...++.+|++.++++.|.++..+.+-+..
T Consensus 161 gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~ 238 (342)
T PRK12557 161 GKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQIL 238 (342)
T ss_pred CCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55 88999999999999999 86666 599999999999999999999999999999999999887775433
No 46
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.58 E-value=2.4e-14 Score=125.49 Aligned_cols=223 Identities=11% Similarity=0.043 Sum_probs=147.2
Q ss_pred eEEEEcCChhHHHHHHHHHHCC--------CeEEEEeC-----ChhhHhHHhhc--------C------CcccCCHHHHH
Q 036264 16 RIGWIGIGLMGSPMASRLLAAG--------YFLTVFAR-----NPSKALHLQSQ--------G------AFLATSPQHLA 68 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g--------~~V~v~dr-----~~~~~~~l~~~--------g------~~~~~s~~e~~ 68 (257)
||+|||.|+||+++|..|+.+| |+|.+|.| +++..+.+.+. + +..++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 55555555432 1 33456778877
Q ss_pred HH-------------------------------------------------HH---HhcCccEEeccCCCCcccccCcce
Q 036264 69 QS-------------------------------------------------FA---REKDCWAVDAPVSGGDIGARDGKL 96 (257)
Q Consensus 69 ~~-------------------------------------------------~~---~~~g~~~~~~pv~~~~~~~~~g~~ 96 (257)
++ .+ -...+.++.+|.+......+..+.
T Consensus 81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~Eva~~~pt~ 160 (342)
T TIGR03376 81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANEVAKEKFSE 160 (342)
T ss_pred hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHHHHcCCCce
Confidence 65 00 012344567777777777777777
Q ss_pred EEEeCCC----HHHHHHHHHHHHHhCC-ceEeCC---cchHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 036264 97 AIFAAGD----SAVVQWLTPLFEVLGK-PTFMGE---AGCGQSC--------------KIANQIVVGANLLGLSEGLVFA 154 (257)
Q Consensus 97 ~~~~~g~----~~~~~~~~~ll~~~g~-~~~~g~---~g~a~~~--------------kl~~n~~~~~~~~~~~Ea~~l~ 154 (257)
+.+++.+ .+..+.++.+|+.--- ++...+ +..+.++ ++..|...+++..++.|+.+++
T Consensus 161 ~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~l~ 240 (342)
T TIGR03376 161 TTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKFA 240 (342)
T ss_pred EEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 7777778 7888899999975322 333333 2223333 3568999999999999999999
Q ss_pred HHcCCCHH--HHHHHHhhcCC--ChHHHHhh--hhhhccCCCCC--------CcccchHHhhHHHHHHHHhhcccccCCC
Q 036264 155 DKAGLDVR--KWMDAIKGGAA--GSMAMELY--GERMIKKDFRP--------GGFAEYMVKDMGMGVDVVEESEDERVVV 220 (257)
Q Consensus 155 ~~~G~~~~--~~~~~~~~~~~--~s~~~~~~--~~~~~~~~~~~--------~~~~~~~~kd~~~~~~~a~~~~~~~g~~ 220 (257)
+++|-+++ +++++..-+.. .+...+++ +..+.....+. ...+-.+..-...+.+++++. +++
T Consensus 241 ~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~----~i~ 316 (342)
T TIGR03376 241 RMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNK----NKD 316 (342)
T ss_pred HHhCCCCCCCcccccchhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHc----CCC
Confidence 99999877 88765444321 01111222 22222201110 111223455566788999999 999
Q ss_pred --CchHHHHHHHHHHHHHCCCCCCChHHHHH
Q 036264 221 --LPGAALGKQLFSAMVANGDGKLGTQGLVS 249 (257)
Q Consensus 221 --~pi~~~~~~~~~~a~~~g~g~~d~~~~~~ 249 (257)
+|+++++++++. ++.+...+++
T Consensus 317 ~~~Pi~~~vy~il~-------~~~~~~~~~~ 340 (342)
T TIGR03376 317 DEFPLFEAVYQILY-------EGLPPKKLPE 340 (342)
T ss_pred cCCCHHHHHHHHHh-------CCCCHHHHHh
Confidence 999999999883 4445555443
No 47
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.54 E-value=1.4e-13 Score=126.68 Aligned_cols=140 Identities=21% Similarity=0.228 Sum_probs=104.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHH-----------hhcC-------------CcccCCHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHL-----------QSQG-------------AFLATSPQHLAQ 69 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~~ 69 (257)
..||+|||+|.||..||.+|+++||+|++||++++.+++. .+.| +..+++++++..
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~~ 84 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALAD 84 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhCC
Confidence 3589999999999999999999999999999999987653 3334 234556654421
Q ss_pred H-----------------------------------------HHH--------hcCccEEe-ccCCCCcccccCcceEEE
Q 036264 70 S-----------------------------------------FAR--------EKDCWAVD-APVSGGDIGARDGKLAIF 99 (257)
Q Consensus 70 ~-----------------------------------------~~~--------~~g~~~~~-~pv~~~~~~~~~g~~~~~ 99 (257)
. .+. ..|.+|++ +|++ .++.+
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~---------~LvEv 155 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVM---------ALVEV 155 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccC---------ceEEE
Confidence 1 000 02333443 3333 36888
Q ss_pred eCC---CHHHHHHHHHHHHHhCC-ceEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036264 100 AAG---DSAVVQWLTPLFEVLGK-PTFMGE-AGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGG 171 (257)
Q Consensus 100 ~~g---~~~~~~~~~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~ 171 (257)
++| ++++++.+.++++.+|+ ++++++ .|. ++|+++ ...+.|++.++++.+.+++++.+++..+
T Consensus 156 v~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrl~----~~~~~EA~~l~e~g~a~~~~ID~al~~~ 223 (503)
T TIGR02279 156 VSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVNRVA----RPYYAEALRALEEQVAAPAVLDAALRDG 223 (503)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 898 89999999999999999 889987 453 334443 4689999999999999999999988764
No 48
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.54 E-value=5.9e-13 Score=116.76 Aligned_cols=224 Identities=12% Similarity=0.076 Sum_probs=129.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcC--------------CcccCCHHHHHH-H---------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQG--------------AFLATSPQHLAQ-S--------- 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~-~--------- 70 (257)
|||+|||+|+||++++..|.++|++|++|+|+++.++.+.+.+ +...+++.+++. .
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 5899999999999999999999999999999998888777531 113344555543 2
Q ss_pred ---------HHHh-c---CccEEe-----------------------ccCC--CCccc-----ccCcceEEEeCCCHHHH
Q 036264 71 ---------FARE-K---DCWAVD-----------------------APVS--GGDIG-----ARDGKLAIFAAGDSAVV 107 (257)
Q Consensus 71 ---------~~~~-~---g~~~~~-----------------------~pv~--~~~~~-----~~~g~~~~~~~g~~~~~ 107 (257)
.+.+ . ...++. .|+. .+|.. ....+.+.+.+.+.+..
T Consensus 81 s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~ 160 (326)
T PRK14620 81 TQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQNETLG 160 (326)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCCHHHH
Confidence 1221 1 111110 0110 01111 11112234444455555
Q ss_pred HHHHHHHHHhCC-ceEeCCcchHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHcCC--CHHHHH--
Q 036264 108 QWLTPLFEVLGK-PTFMGEAGCGQSCKIANQ-----------------IVVGANLLGLSEGLVFADKAGL--DVRKWM-- 165 (257)
Q Consensus 108 ~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n-----------------~~~~~~~~~~~Ea~~l~~~~G~--~~~~~~-- 165 (257)
+.+.++|+.-+. +....++-.....|++-| ........++.|+..++++.|. ++++++
T Consensus 161 ~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~gl 240 (326)
T PRK14620 161 SSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTLIGP 240 (326)
T ss_pred HHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcc
Confidence 666666665444 444445544445554433 4445567789999999999987 788885
Q ss_pred ----HHHhhcC-CChHHHHhhhhhhccCCC-----CCCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHH
Q 036264 166 ----DAIKGGA-AGSMAMELYGERMIKKDF-----RPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMV 235 (257)
Q Consensus 166 ----~~~~~~~-~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~ 235 (257)
|.+.... ..|.... ++..+-.+.. ....+......-+..+.+.++++ |+++|+++.+++++
T Consensus 241 ~g~gdl~~t~~~~~~rN~~-~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~----~i~~P~~~~l~~~~---- 311 (326)
T PRK14620 241 SCLGDLILTCTTLHSRNMS-FGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKL----NIELPICESIYNLL---- 311 (326)
T ss_pred chhhhhhheecCCCCCcHH-HHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHh----CCCCCHHHHHHHHH----
Confidence 4443211 1222111 1111111110 01112233555667889999999 99999999999887
Q ss_pred HCCCCCCChHHHHHH
Q 036264 236 ANGDGKLGTQGLVSV 250 (257)
Q Consensus 236 ~~g~g~~d~~~~~~~ 250 (257)
+++.+...+++.
T Consensus 312 ---~~~~~~~~~~~~ 323 (326)
T PRK14620 312 ---YENISLEKTISV 323 (326)
T ss_pred ---hCCCCHHHHHHH
Confidence 445555555443
No 49
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.51 E-value=3e-12 Score=109.67 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=107.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC--eEEEEeCChhhHhHHhhcCCc-ccCCHHHHHHH---------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGY--FLTVFARNPSKALHLQSQGAF-LATSPQHLAQS--------------------- 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~--~V~v~dr~~~~~~~l~~~g~~-~~~s~~e~~~~--------------------- 70 (257)
|||+|||+|.||.+|+.+|.++|+ +|++|||++++.+.+.+.|.. .+.+++++...
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aD~Vilavp~~~~~~~~~~l~~ 80 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELKKCDVIFLAIPVDAIIEILPKLLD 80 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHhcCCEEEEeCcHHHHHHHHHHHhc
Confidence 589999999999999999999996 799999999988887776653 33344443222
Q ss_pred -------------------HHHh-cCccEEec-cCCCC----ccccc----CcceEEEeC---CCHHHHHHHHHHHHHhC
Q 036264 71 -------------------FARE-KDCWAVDA-PVSGG----DIGAR----DGKLAIFAA---GDSAVVQWLTPLFEVLG 118 (257)
Q Consensus 71 -------------------~~~~-~g~~~~~~-pv~~~----~~~~~----~g~~~~~~~---g~~~~~~~~~~ll~~~g 118 (257)
.+.. .+..|+.+ |+.|+ +..+. .|..++++. ++++.++.++++|+.+|
T Consensus 81 l~~~~iv~d~gs~k~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G 160 (275)
T PRK08507 81 IKENTTIIDLGSTKAKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLG 160 (275)
T ss_pred cCCCCEEEECccchHHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 1111 22457777 88764 33222 455566665 36788999999999999
Q ss_pred C-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 036264 119 K-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKG 170 (257)
Q Consensus 119 ~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 170 (257)
. ++++++.+....+++++++.. ....++.+++. .+.+.+.+.++...
T Consensus 161 ~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~~~~~~~~~~~~~ 208 (275)
T PRK08507 161 MRIVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KEEDERNIFDLAGG 208 (275)
T ss_pred CEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hcCChHHHHhhccc
Confidence 8 999999999999999999864 55555566542 35566665555443
No 50
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.48 E-value=2.4e-12 Score=112.16 Aligned_cols=150 Identities=17% Similarity=0.152 Sum_probs=102.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc-----C--------------CcccCCHHHHHHH----
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ-----G--------------AFLATSPQHLAQS---- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~-----g--------------~~~~~s~~e~~~~---- 70 (257)
.+||+|||+|.||.+||..|+++|++|++||+++++.+.+.+. + +..++++++++++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV 83 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV 83 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence 4689999999999999999999999999999999887766541 1 2334555554433
Q ss_pred ----------------HHHh---cCcc----------------------EEeccCCCCcccccCcceEEEeCC---CHHH
Q 036264 71 ----------------FARE---KDCW----------------------AVDAPVSGGDIGARDGKLAIFAAG---DSAV 106 (257)
Q Consensus 71 ----------------~~~~---~g~~----------------------~~~~pv~~~~~~~~~g~~~~~~~g---~~~~ 106 (257)
.+.. .+.. ++..... .++.. +.++.++.+ +++.
T Consensus 84 i~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~-~p~~~--~~l~~i~~g~~t~~~~ 160 (311)
T PRK06130 84 IEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFF-TPADV--IPLVEVVRGDKTSPQT 160 (311)
T ss_pred EEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccC-CCCcc--CceEEEeCCCCCCHHH
Confidence 1111 1111 1111111 11111 123444454 6899
Q ss_pred HHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036264 107 VQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAA 173 (257)
Q Consensus 107 ~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~ 173 (257)
++.++++|+.+|. +++++....+. +++|++ ...++|++.++++.|++++++.+++..+.+
T Consensus 161 ~~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~----~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g 221 (311)
T PRK06130 161 VATTMALLRSIGKRPVLVKKDIPGF---IANRIQ----HALAREAISLLEKGVASAEDIDEVVKWSLG 221 (311)
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCCc---HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 9999999999999 88887533333 667764 357999999999999999999999876544
No 51
>PRK07680 late competence protein ComER; Validated
Probab=99.47 E-value=4.7e-12 Score=108.37 Aligned_cols=187 Identities=19% Similarity=0.215 Sum_probs=115.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC----eEEEEeCChhhHhHHhhc--CCcccCCHHHHHHH------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGY----FLTVFARNPSKALHLQSQ--GAFLATSPQHLAQS------------------ 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~----~V~v~dr~~~~~~~l~~~--g~~~~~s~~e~~~~------------------ 70 (257)
|+|+|||+|+||++++.+|.++|+ +|++|+|++++.+.+.+. ++....++.+++..
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~ 80 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQ 80 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHHH
Confidence 579999999999999999999984 799999999998888764 66667777776655
Q ss_pred HHHh---cCccEEec--cC----------------C-CCcccccCcceEEEeC--CCHHHHHHHHHHHHHhCCceEeCCc
Q 036264 71 FARE---KDCWAVDA--PV----------------S-GGDIGARDGKLAIFAA--GDSAVVQWLTPLFEVLGKPTFMGEA 126 (257)
Q Consensus 71 ~~~~---~g~~~~~~--pv----------------~-~~~~~~~~g~~~~~~~--g~~~~~~~~~~ll~~~g~~~~~g~~ 126 (257)
.+.. .+..+++. ++ . ..+.....|.+.+..+ .+++..+.++++|+.+|.++++.+.
T Consensus 81 ~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~~~~i~e~ 160 (273)
T PRK07680 81 KLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNISTPLVIEED 160 (273)
T ss_pred HHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCCEEEEChH
Confidence 1111 12222221 11 0 1112233465444555 3567889999999999996666652
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCh-HHHHhh--hh-hhccCCCCCCcccchHH
Q 036264 127 --GCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGS-MAMELY--GE-RMIKKDFRPGGFAEYMV 200 (257)
Q Consensus 127 --g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s-~~~~~~--~~-~~~~~~~~~~~~~~~~~ 200 (257)
.....+--+...+.+..+.++.++. .++.|+++++..+++.....++ .++... .+ .+.+.-.+|+.++..++
T Consensus 161 ~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~l~~~v~spgG~T~~gl 238 (273)
T PRK07680 161 ITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEMLIGMGKLLEKGLYTLPTLQEKVCVKGGITGEGI 238 (273)
T ss_pred hcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChhHHHHH
Confidence 1112222223345555555566653 2448999999988877654322 233221 12 24445557877766555
Q ss_pred hhH
Q 036264 201 KDM 203 (257)
Q Consensus 201 kd~ 203 (257)
+.+
T Consensus 239 ~~l 241 (273)
T PRK07680 239 KVL 241 (273)
T ss_pred HHH
Confidence 443
No 52
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.44 E-value=7e-12 Score=106.53 Aligned_cols=203 Identities=17% Similarity=0.134 Sum_probs=130.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC----eEEEEeCChhhHhHHhhcCCcccCCHHHHHHH-------------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY----FLTVFARNPSKALHLQSQGAFLATSPQHLAQS------------------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~----~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~------------------- 70 (257)
.|||+|||+|+||++|+..|.+++. +|++++|++++. +.....++.+++.+
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~ 76 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLE 76 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence 4799999999999999999999873 599999987652 12223344443332
Q ss_pred --------------------HHHhc-Cc--cEE-eccCCCCcccccCcceEEEeC--CCHHHHHHHHHHHHHhCCceEeC
Q 036264 71 --------------------FAREK-DC--WAV-DAPVSGGDIGARDGKLAIFAA--GDSAVVQWLTPLFEVLGKPTFMG 124 (257)
Q Consensus 71 --------------------~~~~~-g~--~~~-~~pv~~~~~~~~~g~~~~~~~--g~~~~~~~~~~ll~~~g~~~~~g 124 (257)
.+... +. ..+ ..| +.+.....+...+..+ .+++..+.++.+|+.+|.++++.
T Consensus 77 i~~~l~~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mP--n~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~~v~ 154 (260)
T PTZ00431 77 IKPYLGSKLLISICGGLNLKTLEEMVGVEAKIVRVMP--NTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQEIK 154 (260)
T ss_pred HHhhccCCEEEEEeCCccHHHHHHHcCCCCeEEEECC--CchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEEEEC
Confidence 11100 00 011 112 1233334444333322 25677899999999999977777
Q ss_pred Cc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChH-HHHhh--hh-hhccCCCCCCcccch
Q 036264 125 EA--GCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSM-AMELY--GE-RMIKKDFRPGGFAEY 198 (257)
Q Consensus 125 ~~--g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~~~--~~-~~~~~~~~~~~~~~~ 198 (257)
+. ....++--+...+.+.++..+.++ +.+.|++.++..+++.....++. ++... .+ .+.+.-.+||.++..
T Consensus 155 E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~spgG~T~~ 231 (260)
T PTZ00431 155 EKDMDIATAISGCGPAYVFLFIESLIDA---GVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCSPGGITIV 231 (260)
T ss_pred hHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChHHHH
Confidence 62 333333334455777777777766 88999999999998877653333 33332 22 345555678877765
Q ss_pred HHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCC
Q 036264 199 MVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANG 238 (257)
Q Consensus 199 ~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g 238 (257)
++ +..++. |++--+.+++.+.++++.+.|
T Consensus 232 gl-------~~le~~----g~~~~~~~a~~aa~~r~~~l~ 260 (260)
T PTZ00431 232 GL-------YTLEKH----AFKYTVMDAVESACQKSKSMH 260 (260)
T ss_pred HH-------HHHHHC----ChHHHHHHHHHHHHHHHHhcC
Confidence 54 556677 999999999999999988754
No 53
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.44 E-value=3.4e-11 Score=107.36 Aligned_cols=152 Identities=17% Similarity=0.326 Sum_probs=106.7
Q ss_pred CCCCCeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChh-hHhHHhh-cCCcccCCHH----HHHHH-------------
Q 036264 11 SPSTTRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPS-KALHLQS-QGAFLATSPQ----HLAQS------------- 70 (257)
Q Consensus 11 ~~~~~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~-~~~~l~~-~g~~~~~s~~----e~~~~------------- 70 (257)
++..++|+||| +|.||..+|..|.++||+|++|||++. ..+.+.. ..+.+...|. +++..
T Consensus 95 ~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~~~~~~~~~l~~l~~~~iv~Dv 174 (374)
T PRK11199 95 NPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIHLTEEVIARLPPLPEDCILVDL 174 (374)
T ss_pred CcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHHHHHHHHHHHhCCCCCcEEEEC
Confidence 34567999999 999999999999999999999998642 2222221 1222111111 11111
Q ss_pred ---------HHH-hcCccEE-eccCCCCcccccCcceEEEeCC-CHHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHH
Q 036264 71 ---------FAR-EKDCWAV-DAPVSGGDIGARDGKLAIFAAG-DSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQ 137 (257)
Q Consensus 71 ---------~~~-~~g~~~~-~~pv~~~~~~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n 137 (257)
.+. .....|+ ..|++|+......+..+++..+ +++.++.++++++.+|. ++++++.+....+++++-
T Consensus 175 ~SvK~~~~~~~~~~~~~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vsh 254 (374)
T PRK11199 175 TSVKNAPLQAMLAAHSGPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQA 254 (374)
T ss_pred CCccHHHHHHHHHhCCCCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHH
Confidence 111 1223577 6699987665556666777766 56788999999999999 999999999999999883
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 036264 138 IVVGANLLGLSEGLVFADKAGLDVRKWMD 166 (257)
Q Consensus 138 ~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~ 166 (257)
+ .++.+++++..+++ .+.+.+.+.+
T Consensus 255 L---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 255 L---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred H---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 3 56777788888877 7888776544
No 54
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.42 E-value=5.4e-12 Score=108.83 Aligned_cols=140 Identities=19% Similarity=0.186 Sum_probs=98.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc------------------------CCcccCCHHHHHHH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ------------------------GAFLATSPQHLAQS 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~------------------------g~~~~~s~~e~~~~ 70 (257)
.||+|||+|.||..||..|+++||+|++||+++++.+++.+. ++..+.++++++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 489999999999999999999999999999999988775421 12345566555543
Q ss_pred --------------------HHH---h---------------------------cCccEEeccCCCCcccccCcceEEEe
Q 036264 71 --------------------FAR---E---------------------------KDCWAVDAPVSGGDIGARDGKLAIFA 100 (257)
Q Consensus 71 --------------------~~~---~---------------------------~g~~~~~~pv~~~~~~~~~g~~~~~~ 100 (257)
.+. . .|.+|+ +|+.+ +.++.++
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~-------~~Lve~v 153 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHK-------MKLVELI 153 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCccc-------CceEEEe
Confidence 000 0 122233 33322 3578888
Q ss_pred CC---CHHHHHHHHHHHHHhCC-ceEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036264 101 AG---DSAVVQWLTPLFEVLGK-PTFMGE-AGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGG 171 (257)
Q Consensus 101 ~g---~~~~~~~~~~ll~~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~ 171 (257)
+| +++++++++++++.+++ ++++++ +|. . .|- +....++|++.+.+.--.+++++-.++..+
T Consensus 154 ~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~Gf--~----~nR---l~~~~~~ea~~~~~~gv~~~~~iD~~~~~g 220 (288)
T PRK09260 154 RGLETSDETVQVAKEVAEQMGKETVVVNEFPGF--V----TSR---ISALVGNEAFYMLQEGVATAEDIDKAIRLG 220 (288)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEecCcccH--H----HHH---HHHHHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 88 89999999999999999 889986 332 1 222 234577899888876546788776666544
No 55
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.42 E-value=1.7e-12 Score=111.48 Aligned_cols=129 Identities=17% Similarity=0.218 Sum_probs=92.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCc-ccCCHHHHHHH-----------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAF-LATSPQHLAQS----------------------- 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~-~~~s~~e~~~~----------------------- 70 (257)
|||+|||+|.||..++..|.++|++|++|||++++.+.+.+.|.. ...+..+++.+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~ 80 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPA 80 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999988887766542 11111122222
Q ss_pred -------------------HHHhcCccEEe-ccCCCCc-ccccC-------cceEEEe---CCCHHHHHHHHHHHHHhCC
Q 036264 71 -------------------FAREKDCWAVD-APVSGGD-IGARD-------GKLAIFA---AGDSAVVQWLTPLFEVLGK 119 (257)
Q Consensus 71 -------------------~~~~~g~~~~~-~pv~~~~-~~~~~-------g~~~~~~---~g~~~~~~~~~~ll~~~g~ 119 (257)
.+......|+. .|++|++ .+... +...+++ .++++.++.++++++.+|.
T Consensus 81 l~~~~ii~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~ 160 (279)
T PRK07417 81 LPPEAIVTDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGS 160 (279)
T ss_pred CCCCcEEEeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCC
Confidence 12223335776 4888765 22222 2222332 2478889999999999999
Q ss_pred -ceEeCCcchHHHHHHHHHHHHHHH
Q 036264 120 -PTFMGEAGCGQSCKIANQIVVGAN 143 (257)
Q Consensus 120 -~~~~g~~g~a~~~kl~~n~~~~~~ 143 (257)
++++++.+....+++++++.....
T Consensus 161 ~~v~~~~~~hD~~~a~~shlp~~~a 185 (279)
T PRK07417 161 KIYTADPEEHDRAVALISHLPVMVS 185 (279)
T ss_pred EEEEcCHHHHHHHHHHHcchHHHHH
Confidence 889999999999999988776544
No 56
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.38 E-value=8.5e-11 Score=106.82 Aligned_cols=149 Identities=16% Similarity=0.197 Sum_probs=98.6
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh-cCCcccCCHHHHHHH----------------------
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS-QGAFLATSPQHLAQS---------------------- 70 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~---------------------- 70 (257)
|||+||| +|.||.+++..|.++|++|++|+|++++..++.. .|+....++.+++.+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~ 80 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAP 80 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHh
Confidence 5899997 8999999999999999999999999887655443 355444454444332
Q ss_pred --------------------HHH---hcCccEEec-cCCCCcccccCcceEEEeCC---CHHHHHHHHHHHHHhCC-ceE
Q 036264 71 --------------------FAR---EKDCWAVDA-PVSGGDIGARDGKLAIFAAG---DSAVVQWLTPLFEVLGK-PTF 122 (257)
Q Consensus 71 --------------------~~~---~~g~~~~~~-pv~~~~~~~~~g~~~~~~~g---~~~~~~~~~~ll~~~g~-~~~ 122 (257)
.+. +.+..|+.+ |++|.......+..++++.+ +++.+++++++|+.+|. +++
T Consensus 81 ~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~ 160 (437)
T PRK08655 81 HVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIV 160 (437)
T ss_pred hCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 111 235678877 88875444445565666554 57888999999999998 777
Q ss_pred eCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 036264 123 MGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDA 167 (257)
Q Consensus 123 ~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~ 167 (257)
+++......+ .+.....++.+++.+..+ .+.|++.+.....
T Consensus 161 ~~~e~HD~~~---a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~ 201 (437)
T PRK08655 161 TSPEEHDRIM---SVVQGLTHFAYISIASTL-KRLGVDIKESRKF 201 (437)
T ss_pred CCHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhh
Confidence 7765333332 222222333344444433 6679987765543
No 57
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.38 E-value=2.3e-11 Score=104.33 Aligned_cols=207 Identities=15% Similarity=0.115 Sum_probs=122.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC----CeEEEEeCCh-hhHhHHhhc--CCcccCCHHHHHHH-----------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAG----YFLTVFARNP-SKALHLQSQ--GAFLATSPQHLAQS----------------- 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g----~~V~v~dr~~-~~~~~l~~~--g~~~~~s~~e~~~~----------------- 70 (257)
+||+|||+|+||.+++.+|.++| ++|++|+|++ ++.+.+.+. +.....+..+++..
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl 81 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLPLL 81 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHHHH
Confidence 68999999999999999999998 7899999864 455555443 33445666666554
Q ss_pred -HHHh---cCccEEec----------------cCC----CCcccccCcceEEEeCC--CHHHHHHHHHHHHHhCCceEeC
Q 036264 71 -FARE---KDCWAVDA----------------PVS----GGDIGARDGKLAIFAAG--DSAVVQWLTPLFEVLGKPTFMG 124 (257)
Q Consensus 71 -~~~~---~g~~~~~~----------------pv~----~~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~~g~~~~~g 124 (257)
.+.. .+..+++. ++. ..+.....|...+..+. +++..+.++.+|+.+|.++++.
T Consensus 82 ~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~ 161 (277)
T PRK06928 82 KDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTIR 161 (277)
T ss_pred HHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEEEEc
Confidence 1111 12122211 111 12233344543343332 5677889999999999977776
Q ss_pred Cc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhcCCChH-HHHh--hhh-hhccCCCCCCcccc
Q 036264 125 EA--GCGQSCKIANQIVVGANLLGLSEGLVFADKA-GLDVRKWMDAIKGGAAGSM-AMEL--YGE-RMIKKDFRPGGFAE 197 (257)
Q Consensus 125 ~~--g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~-G~~~~~~~~~~~~~~~~s~-~~~~--~~~-~~~~~~~~~~~~~~ 197 (257)
+. ....++--+...+.+..+..+.++ +.+. |+++++..+++.....++. ++.. ..+ .+.++-.+|+.++.
T Consensus 162 E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~~~~p~~l~~~v~spgGtT~ 238 (277)
T PRK06928 162 EENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGTIERVATKGGITA 238 (277)
T ss_pred hhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHhCCCCChHHH
Confidence 52 122222222233666666666666 6777 7999999998877654333 3322 222 24455567887776
Q ss_pred hHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHH
Q 036264 198 YMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVA 236 (257)
Q Consensus 198 ~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~ 236 (257)
.+++-++ . |++--+.+++...+++..+
T Consensus 239 ~gl~~le--------~----~~~~~~~~~~~~a~~r~~~ 265 (277)
T PRK06928 239 EGAEVIQ--------A----QLPQFFDELLDRTQKKYAS 265 (277)
T ss_pred HHHHHHH--------H----HHHHHHHHHHHHHHHHHHH
Confidence 5553332 2 4445555555555555554
No 58
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.33 E-value=2.3e-10 Score=99.30 Aligned_cols=204 Identities=20% Similarity=0.195 Sum_probs=119.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcc-------------cCCHHHHHHH-----------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL-------------ATSPQHLAQS----------- 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~-------------~~s~~e~~~~----------- 70 (257)
|||+|||+|.||..+|..|+++||+|++|+| +++.+.+.+.|... .++.+++...
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 6899999999999999999999999999999 78888777654321 2233333222
Q ss_pred -------HHHh---cC----------------------------ccEEeccCCC-CcccccCcceEEEeCC----CHHHH
Q 036264 71 -------FARE---KD----------------------------CWAVDAPVSG-GDIGARDGKLAIFAAG----DSAVV 107 (257)
Q Consensus 71 -------~~~~---~g----------------------------~~~~~~pv~~-~~~~~~~g~~~~~~~g----~~~~~ 107 (257)
.+.. .+ +.+..++..+ +..... +.-.+.+|. ..+..
T Consensus 80 ~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~-~~~~~~iG~~~~~~~~~~ 158 (305)
T PRK12921 80 QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQR-ADHRLTFGEIPGQRSERT 158 (305)
T ss_pred CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEc-CCCcEEEcCCCCCcCHHH
Confidence 0110 01 1111111111 111111 111233432 23455
Q ss_pred HHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCCH--HH
Q 036264 108 QWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVV---------------------GANLLGLSEGLVFADKAGLDV--RK 163 (257)
Q Consensus 108 ~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~---------------------~~~~~~~~Ea~~l~~~~G~~~--~~ 163 (257)
+.+..+|...+. +....+.-.....|++.|... ......+.|...++++.|++. +.
T Consensus 159 ~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~ 238 (305)
T PRK12921 159 RAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRDDV 238 (305)
T ss_pred HHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCChhH
Confidence 677778877776 566666788889998877543 234557889999999999863 33
Q ss_pred HHHHHhh---c--CCChHHHHhhhhhhccCCCCCCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHH
Q 036264 164 WMDAIKG---G--AAGSMAMELYGERMIKKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAM 234 (257)
Q Consensus 164 ~~~~~~~---~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a 234 (257)
+.+.+.. . ...|.++. |+..+..++ .--=.+.+++.++++ |+++|..+.+++.++..
T Consensus 239 ~~~~~~~~~~~~~~~~sSm~~---------D~~~gr~tE-id~i~G~vv~~a~~~----gv~~P~~~~l~~~~~~~ 300 (305)
T PRK12921 239 VEEIVKIFAGAPGDMKTSMLR---------DMEKGRPLE-IDHLQGVLLRRARAH----GIPTPILDTVYALLKAY 300 (305)
T ss_pred HHHHHHHHhccCCCCCcHHHH---------HHHcCCccc-HHHHHHHHHHHHHHh----CCCCcHHHHHHHHHHHH
Confidence 3332221 0 11111111 111111111 112234689999999 99999999999888654
No 59
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.32 E-value=5.8e-11 Score=99.95 Aligned_cols=156 Identities=18% Similarity=0.109 Sum_probs=99.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC----eEEEEeC-ChhhHhHHhhc-CCcccCCHHHHHHH-----------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY----FLTVFAR-NPSKALHLQSQ-GAFLATSPQHLAQS----------------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~----~V~v~dr-~~~~~~~l~~~-g~~~~~s~~e~~~~----------------- 70 (257)
.+||+|||+|+||.+++..|.++|+ +|++++| ++++.+.+.+. ++....++++++++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~~~v~ 83 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEELL 83 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHHHHHH
Confidence 4789999999999999999998873 3778887 47888887764 66666777777765
Q ss_pred -HHHh--cCccEE-----------------------eccCCCCcccccCcceEEEeCCCHHHHHHHHHHHHHhCCceEeC
Q 036264 71 -FARE--KDCWAV-----------------------DAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFMG 124 (257)
Q Consensus 71 -~~~~--~g~~~~-----------------------~~pv~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~g 124 (257)
.+.. .+..++ ..|.+..........+++....+++..+.++++|+.+|.++++.
T Consensus 84 ~~l~~~~~~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~ 163 (245)
T PRK07634 84 AELSPLLSNQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCT 163 (245)
T ss_pred HHHHhhccCCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 1110 111111 12322211222221222233457888999999999999955666
Q ss_pred Cc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036264 125 EA--GCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGA 172 (257)
Q Consensus 125 ~~--g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~ 172 (257)
+. ....++--+...+.+..+..+.++ +.+.|+++++..+++....
T Consensus 164 e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 164 EEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred HHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHH
Confidence 52 233333334444555555555555 7889999999888877643
No 60
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.27 E-value=2.7e-10 Score=98.45 Aligned_cols=147 Identities=20% Similarity=0.164 Sum_probs=92.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh-----------cC-------------CcccCCHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS-----------QG-------------AFLATSPQHLAQ 69 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~ 69 (257)
.+||+|||+|.||.+||.+|+++|++|++||+++++.+.+.+ .| +..++++++ +.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-LA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-hc
Confidence 358999999999999999999999999999999988766432 12 233444432 22
Q ss_pred H--------------------HHH---hcCccEE----------------------eccCCCCcccccCcceEEE--eCC
Q 036264 70 S--------------------FAR---EKDCWAV----------------------DAPVSGGDIGARDGKLAIF--AAG 102 (257)
Q Consensus 70 ~--------------------~~~---~~g~~~~----------------------~~pv~~~~~~~~~g~~~~~--~~g 102 (257)
+ .+. ..+..++ ....+. |.... +..-++ .++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~-p~~~~-~~vei~~g~~t 160 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMN-PVPVM-KLVELIRGIAT 160 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccC-CcccC-ceEEEeCCCCC
Confidence 2 000 0111111 100000 00000 111122 346
Q ss_pred CHHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036264 103 DSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGG 171 (257)
Q Consensus 103 ~~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~ 171 (257)
+++.++.+.++++.+|+ ++++++.+ -+++++++ ...+.|++.+.++-=.+++++-.++..+
T Consensus 161 ~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~----~~~~~ea~~~~~~g~~~~~~iD~~~~~g 222 (292)
T PRK07530 161 DEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRIL----LPMINEAIYTLYEGVGSVEAIDTAMKLG 222 (292)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHH----HHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 89999999999999999 88888755 45556654 4467889888877334677776666443
No 61
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.25 E-value=2.5e-09 Score=93.12 Aligned_cols=151 Identities=19% Similarity=0.177 Sum_probs=98.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh-----------c---------CCcccCCHHHHHHH---
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS-----------Q---------GAFLATSPQHLAQS--- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~-----------~---------g~~~~~s~~e~~~~--- 70 (257)
..||+|||+|.||..||..|+.+|++|++||++++..+.+.+ . .+..++++++++.+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 358999999999999999999999999999999886654322 1 12445667666644
Q ss_pred -----------------HH---HhcCccEEeccCCCC----------------------cccccCcceEEEeCC---CHH
Q 036264 71 -----------------FA---REKDCWAVDAPVSGG----------------------DIGARDGKLAIFAAG---DSA 105 (257)
Q Consensus 71 -----------------~~---~~~g~~~~~~pv~~~----------------------~~~~~~g~~~~~~~g---~~~ 105 (257)
.+ .+.+. ++...-++- |+.. -.++-++.| +++
T Consensus 87 ViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~--~pLVEVv~g~~T~~e 163 (321)
T PRK07066 87 IQESAPEREALKLELHERISRAAKPDA-IIASSTSGLLPTDFYARATHPERCVVGHPFNPVYL--LPLVEVLGGERTAPE 163 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHHHHHHhcCCcccEEEEecCCcccc--CceEEEeCCCCCCHH
Confidence 01 11122 222111110 0010 113344443 689
Q ss_pred HHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036264 106 VVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAG 174 (257)
Q Consensus 106 ~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~ 174 (257)
.++.+..+++.+|+ ++.+...-.|.. .|- +....+.|++.+.+.-..+++++-.++..+.+.
T Consensus 164 ~~~~~~~f~~~lGk~pV~v~kd~pGFi----~NR---l~~a~~~EA~~lv~eGvas~edID~a~~~g~g~ 226 (321)
T PRK07066 164 AVDAAMGIYRALGMRPLHVRKEVPGFI----ADR---LLEALWREALHLVNEGVATTGEIDDAIRFGAGI 226 (321)
T ss_pred HHHHHHHHHHHcCCEeEecCCCCccHH----HHH---HHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 99999999999998 777743222222 232 346688999999999888999998887766543
No 62
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.25 E-value=4.9e-10 Score=96.47 Aligned_cols=148 Identities=19% Similarity=0.129 Sum_probs=93.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhH-----------HhhcCCc-------------ccCCHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALH-----------LQSQGAF-------------LATSPQHLAQ 69 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~-----------l~~~g~~-------------~~~s~~e~~~ 69 (257)
..||+|||+|.||..||..|+++||+|++||++++..+. +.+.|.. .++++++ +.
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 83 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-FA 83 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-hC
Confidence 358999999999999999999999999999999998766 3333322 4455533 22
Q ss_pred H-----------------------HHH-hcCccEEec----c------------------CCCCcccccCcceEEEeCCC
Q 036264 70 S-----------------------FAR-EKDCWAVDA----P------------------VSGGDIGARDGKLAIFAAGD 103 (257)
Q Consensus 70 ~-----------------------~~~-~~g~~~~~~----p------------------v~~~~~~~~~g~~~~~~~g~ 103 (257)
+ ... ..+..+.+. | .+..+.....-.++...+++
T Consensus 84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~ 163 (286)
T PRK07819 84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTS 163 (286)
T ss_pred CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCC
Confidence 2 111 112222111 1 11000000111223344568
Q ss_pred HHHHHHHHHHHH-HhCC-ceEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036264 104 SAVVQWLTPLFE-VLGK-PTFMGE-AGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGG 171 (257)
Q Consensus 104 ~~~~~~~~~ll~-~~g~-~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~ 171 (257)
+++++++.+++. .+++ ++.+++ +|- . .| -+....++|++.+.+.--.+++++-.++..+
T Consensus 164 ~~~~~~~~~~~~~~lgk~pv~v~d~pGf--i----~n---Ri~~~~~~Ea~~ll~eGv~~~~dID~~~~~g 225 (286)
T PRK07819 164 EATVARAEEFASDVLGKQVVRAQDRSGF--V----VN---ALLVPYLLSAIRMVESGFATAEDIDKAMVLG 225 (286)
T ss_pred HHHHHHHHHHHHHhCCCCceEecCCCCh--H----HH---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 999999999988 5999 888876 332 2 22 1345677899998876656788876666544
No 63
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.24 E-value=2.4e-10 Score=98.96 Aligned_cols=140 Identities=21% Similarity=0.196 Sum_probs=91.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhH-----------HhhcC-------------CcccCCHHHHHHH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALH-----------LQSQG-------------AFLATSPQHLAQS 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~-----------l~~~g-------------~~~~~s~~e~~~~ 70 (257)
.||+|||+|.||.+||.+|+++|++|++||+++++.+. +.+.| ....++. +++++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD 83 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence 58999999999999999999999999999999988653 32222 1222233 23322
Q ss_pred --------------------HHHh---c---------------------------CccEEeccCCCCcccccCcceEEEe
Q 036264 71 --------------------FARE---K---------------------------DCWAVDAPVSGGDIGARDGKLAIFA 100 (257)
Q Consensus 71 --------------------~~~~---~---------------------------g~~~~~~pv~~~~~~~~~g~~~~~~ 100 (257)
.+.. . +.+|.+.|.. +.++.++
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~--------~~lveiv 155 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPI--------MKLVEII 155 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCccc--------CceEEEe
Confidence 0110 1 1112222211 2334555
Q ss_pred CC---CHHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036264 101 AG---DSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGG 171 (257)
Q Consensus 101 ~g---~~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~ 171 (257)
.+ +++.++.++++|+.+|+ ++++++... .+++.++ ...++|++.+.+....+++++-.++..+
T Consensus 156 ~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g----~i~nri~----~~~~~ea~~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 156 RGADTSDEVFDATKALAERFGKTVVCSQDYPG----FIVNRIL----MPMINEAFYALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeEEecCccc----HHHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 43 78999999999999999 888877322 2344443 4468999999888767888876666544
No 64
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.22 E-value=6.3e-10 Score=95.92 Aligned_cols=149 Identities=14% Similarity=0.109 Sum_probs=95.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc-------------------------CCcccCCHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ-------------------------GAFLATSPQHLA 68 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~-------------------------g~~~~~s~~e~~ 68 (257)
.+||+|||+|.||.+||..|+++|++|++||+++++.+++.+. ++..++++++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 3589999999999999999999999999999998876654321 223456666655
Q ss_pred HH--------------------HHHh---cCc----------------------cEEeccCCCCcccccCcceEEEe---
Q 036264 69 QS--------------------FARE---KDC----------------------WAVDAPVSGGDIGARDGKLAIFA--- 100 (257)
Q Consensus 69 ~~--------------------~~~~---~g~----------------------~~~~~pv~~~~~~~~~g~~~~~~--- 100 (257)
.+ .+.+ .+. .|+....+.. .. ...++.++
T Consensus 83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p-~~--~~~lvevv~~~ 159 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANE-IW--KNNTAEIMGHP 159 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCC-CC--cCCeEEEeCCC
Confidence 43 0110 111 1222111111 01 11233444
Q ss_pred CCCHHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036264 101 AGDSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGA 172 (257)
Q Consensus 101 ~g~~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~ 172 (257)
..++++++.+.++++.+|+ ++.+.....+... | -+....++|++.+.+.--.+++++-.++..+.
T Consensus 160 ~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~----n---Ri~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~ 225 (287)
T PRK08293 160 GTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYIL----N---SLLVPFLSAALALWAKGVADPETIDKTWMIAT 225 (287)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhH----H---HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 3478999999999999999 7777633333331 1 12355679999998887678988877765543
No 65
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.21 E-value=1.3e-09 Score=94.43 Aligned_cols=205 Identities=18% Similarity=0.171 Sum_probs=118.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcc-----------cCCHHHHHHH-------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL-----------ATSPQHLAQS------------- 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~-----------~~s~~e~~~~------------- 70 (257)
|||+|||+|+||+.+|..|.++|++|++|+|++++.+.+.+.|... .++++++ ..
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~~ 79 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQL 79 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccccH
Confidence 6899999999999999999999999999999988888887766532 2333332 22
Q ss_pred -----HHHh---cCccE----------------------Eec----c--CC--CCcccccCcceEEEeCC---CHHHHHH
Q 036264 71 -----FARE---KDCWA----------------------VDA----P--VS--GGDIGARDGKLAIFAAG---DSAVVQW 109 (257)
Q Consensus 71 -----~~~~---~g~~~----------------------~~~----p--v~--~~~~~~~~g~~~~~~~g---~~~~~~~ 109 (257)
.+.. .+..+ +.+ + .. +.......+. +.+|. +.+..+.
T Consensus 80 ~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~--~~ig~~~~~~~~~~~ 157 (304)
T PRK06522 80 PAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGR--LKIGEPDGESAAAEA 157 (304)
T ss_pred HHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCC--EEEeCCCCCcHHHHH
Confidence 1110 00001 100 0 00 0001111222 22332 2234667
Q ss_pred HHHHHHHhCC-ceEeCCcchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCCH--HHHH
Q 036264 110 LTPLFEVLGK-PTFMGEAGCGQSCKIANQIVV---------------------GANLLGLSEGLVFADKAGLDV--RKWM 165 (257)
Q Consensus 110 ~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~---------------------~~~~~~~~Ea~~l~~~~G~~~--~~~~ 165 (257)
+.++|+..+. +....+.......|++.|... ......+.|...++++.|++. +.+.
T Consensus 158 l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~ 237 (304)
T PRK06522 158 LADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVEEVR 237 (304)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChHHHH
Confidence 7788887776 555555777778887766432 234457889999999998763 3333
Q ss_pred HHHhhc---C--CChHHHHhhhhhhccCCCCCCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHH
Q 036264 166 DAIKGG---A--AGSMAMELYGERMIKKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVA 236 (257)
Q Consensus 166 ~~~~~~---~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~ 236 (257)
+.+... + ..|.++. |+..+-.++ .---.+++++.++++ |+++|..+.+++.++...+
T Consensus 238 ~~~~~~~~~~~~~~sSm~~---------D~~~gr~tE-id~i~G~~v~~a~~~----gv~~P~~~~l~~~~~~~~~ 299 (304)
T PRK06522 238 EYVRQVIQKTAANTSSMLQ---------DLEAGRPTE-IDAIVGYVLRRGRKH----GIPTPLNDALYGLLKAKES 299 (304)
T ss_pred HHHHHHhhccCCCCchHHH---------HHHcCCCcc-cchhccHHHHHHHHc----CCCCcHHHHHHHHHHHHHH
Confidence 332211 0 1111111 111111111 112234588999999 9999999999988865543
No 66
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.21 E-value=2.9e-10 Score=98.23 Aligned_cols=140 Identities=17% Similarity=0.148 Sum_probs=92.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh--------------cCC-------------cccCCHHHH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS--------------QGA-------------FLATSPQHL 67 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~--------------~g~-------------~~~~s~~e~ 67 (257)
.||+|||+|.||.+||..|+++|++|++||+++++.+...+ .+. ...++. ++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 58999999999999999999999999999999988764221 111 122232 22
Q ss_pred HHH--------------------HHHh---c---------------------------CccEEe-ccCCCCcccccCcce
Q 036264 68 AQS--------------------FARE---K---------------------------DCWAVD-APVSGGDIGARDGKL 96 (257)
Q Consensus 68 ~~~--------------------~~~~---~---------------------------g~~~~~-~pv~~~~~~~~~g~~ 96 (257)
+.+ .+.. . +.+|.. +|+.+. .
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~--------v 154 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKL--------I 154 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCcc--------E
Confidence 221 0110 1 111111 111111 1
Q ss_pred EEEeC--CCHHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036264 97 AIFAA--GDSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGG 171 (257)
Q Consensus 97 ~~~~~--g~~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~ 171 (257)
-++.+ .+++.++.+.++++.+|+ ++++++.+....-|+..|+ ++|++.+.+.--.+++++-.++..+
T Consensus 155 Ev~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~--------~~ea~~~~~~g~a~~~~iD~~~~~~ 224 (291)
T PRK06035 155 EVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGW--------LLEAIRSFEIGIATIKDIDEMCKLA 224 (291)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHH--------HHHHHHHHHcCCCCHHHHHHHHhhc
Confidence 11212 278999999999999999 8899988888888887775 4788888866335788776666544
No 67
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.19 E-value=1.7e-09 Score=94.32 Aligned_cols=208 Identities=19% Similarity=0.179 Sum_probs=117.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcc--------------cCCHH-------------
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL--------------ATSPQ------------- 65 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~--------------~~s~~------------- 65 (257)
+.|||+|||+|.||+.+|..|.++||+|++|.|++. +.+.+.|... .++++
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK 81 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLK 81 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEec
Confidence 357999999999999999999999999999999863 3444433221 11111
Q ss_pred -----HHHHH----------------------HHHhc-C-ccEEec------cCCC-Cc-ccccCcceEE-EeCC-C---
Q 036264 66 -----HLAQS----------------------FAREK-D-CWAVDA------PVSG-GD-IGARDGKLAI-FAAG-D--- 103 (257)
Q Consensus 66 -----e~~~~----------------------~~~~~-g-~~~~~~------pv~~-~~-~~~~~g~~~~-~~~g-~--- 103 (257)
+++.. .+... + ..++.+ ...+ +. .....+.+.+ ...+ +
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~ 161 (313)
T PRK06249 82 TTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADD 161 (313)
T ss_pred CCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccc
Confidence 11111 11110 1 112221 1111 11 1112233222 1123 2
Q ss_pred --HHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCC
Q 036264 104 --SAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVV---------------------GANLLGLSEGLVFADKAGL 159 (257)
Q Consensus 104 --~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~---------------------~~~~~~~~Ea~~l~~~~G~ 159 (257)
.+..+.+..+|+..+. +....+.......|++.|... ......+.|...++++.|+
T Consensus 162 ~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~Gi 241 (313)
T PRK06249 162 GITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAAACGH 241 (313)
T ss_pred hHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHHhcCC
Confidence 3556677888888777 667777888888888766432 2244568899999999998
Q ss_pred CH--H---HHHHHHhhcCCChHHHHhhhhhhccCCCCCCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHH
Q 036264 160 DV--R---KWMDAIKGGAAGSMAMELYGERMIKKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAM 234 (257)
Q Consensus 160 ~~--~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a 234 (257)
+. + .+.+........ .+.|. .|+..+..++ .--=.+.+++.++++ |+++|..+.+++.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~-------~sSM~-qD~~~gr~tE-id~i~G~vv~~a~~~----Gi~~P~~~~l~~~l~~~ 308 (313)
T PRK06249 242 TLPEGYADHMLAVTERMPDY-------RPSMY-HDFEEGRPLE-LEAIYANPLAAARAA----GCAMPRVEMLYQALEFL 308 (313)
T ss_pred CCChhHHHHHHHHhhcCCCC-------CChHH-HHHHCCCccc-HHHHhhHHHHHHHHh----CCCCcHHHHHHHHHHHH
Confidence 62 2 222222111100 01111 1222222222 222345789999999 99999999998877654
Q ss_pred H
Q 036264 235 V 235 (257)
Q Consensus 235 ~ 235 (257)
.
T Consensus 309 e 309 (313)
T PRK06249 309 D 309 (313)
T ss_pred H
Confidence 3
No 68
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.08 E-value=3.3e-09 Score=94.28 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=90.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcc----cCCHHHHHHH--------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL----ATSPQHLAQS-------------------- 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~----~~s~~e~~~~-------------------- 70 (257)
.+|+|||+|.||.+||..|.++|++|.+|+++++..+.....+... .+++++++.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~l 80 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAEL 80 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHHH
Confidence 3799999999999999999999999999998877654433332211 2233333322
Q ss_pred -----------------------HHH---hcCccEEe-ccCCCCcc--------cccCcceEEEeC---CCHHHHHHHHH
Q 036264 71 -----------------------FAR---EKDCWAVD-APVSGGDI--------GARDGKLAIFAA---GDSAVVQWLTP 112 (257)
Q Consensus 71 -----------------------~~~---~~g~~~~~-~pv~~~~~--------~~~~g~~~~~~~---g~~~~~~~~~~ 112 (257)
.+. ..+..|+. .|+.|+.. ....+...+++. .+++.++.+++
T Consensus 81 ~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~ 160 (359)
T PRK06545 81 ADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKD 160 (359)
T ss_pred hhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHH
Confidence 111 13445777 47776521 111233344443 47888999999
Q ss_pred HHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 036264 113 LFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKG 170 (257)
Q Consensus 113 ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 170 (257)
+|+.+|. ++++.+..-...+.++..+-. .+++++ +...+.+.+....+...
T Consensus 161 l~~~lGa~~v~~~~~~HD~~~A~vshlPh-----~ia~al--~~~~~~~~~~~~~la~~ 212 (359)
T PRK06545 161 LLSGTGAKFVVLDAEEHDRAVALVSHLPH-----ILASSL--AARLAGEHPLALRLAAG 212 (359)
T ss_pred HHHHcCCEEEECCHHHHhHHHhHhccHHH-----HHHHHH--HHhhccCchHHHhhhcc
Confidence 9999999 778876544444444433222 222332 55556665555555443
No 69
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.03 E-value=5e-10 Score=87.95 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=48.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcC--------------CcccCCHHHHHHH
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQG--------------AFLATSPQHLAQS 70 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~~ 70 (257)
||+|||.|+||+++|..|+++||+|++|.|+++..+.+.+.+ +.+++|+++++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ 69 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED 69 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc
Confidence 799999999999999999999999999999999998887642 3456788888876
No 70
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.02 E-value=2.5e-08 Score=85.75 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=90.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHh-----------HHhhcC-------------CcccCCHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKAL-----------HLQSQG-------------AFLATSPQHLAQ 69 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~-----------~l~~~g-------------~~~~~s~~e~~~ 69 (257)
++||+|||+|.||.++|..|+++|++|++||+++++.+ .+.+.| +..+++.++ +.
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 45899999999999999999999999999999998874 333333 222344432 22
Q ss_pred H--------------------HHHh-------------------------cCccEEec-cCCCCcccccCcceEEE--eC
Q 036264 70 S--------------------FARE-------------------------KDCWAVDA-PVSGGDIGARDGKLAIF--AA 101 (257)
Q Consensus 70 ~--------------------~~~~-------------------------~g~~~~~~-pv~~~~~~~~~g~~~~~--~~ 101 (257)
+ .+.+ +...++.. |..+. .... ..-+. .+
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~--~~~~-~vev~~g~~ 158 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPV--PVMK-LVEIIRGLA 158 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCc--ccCc-cEEEeCCCC
Confidence 2 0110 11112221 21111 1111 11122 23
Q ss_pred CCHHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036264 102 GDSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGG 171 (257)
Q Consensus 102 g~~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~ 171 (257)
.+++.++.++++++.+|+ ++++++.. +.. .| -+....++|+..+.++--.+++++-.++..+
T Consensus 159 t~~e~~~~~~~l~~~lGk~pv~~~d~~-g~i----~~---Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g 221 (282)
T PRK05808 159 TSDATHEAVEALAKKIGKTPVEVKNAP-GFV----VN---RILIPMINEAIFVLAEGVATAEDIDEGMKLG 221 (282)
T ss_pred CCHHHHHHHHHHHHHcCCeeEEecCcc-ChH----HH---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 478999999999999999 88887632 222 22 2345678899999877556788776666544
No 71
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.00 E-value=1.9e-08 Score=87.42 Aligned_cols=207 Identities=16% Similarity=0.127 Sum_probs=116.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc-CCccc------------CC-----------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ-GAFLA------------TS----------------- 63 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~-g~~~~------------~s----------------- 63 (257)
.|||+|||+|.||+.+|..|.++|++|++++|++++.+.+++. |.... .+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 4789999999999999999999999999999998888877653 32211 00
Q ss_pred -HHHHHHH----------------------HHHhc-Cc-cEEeccCC-C------Cc-ccccCcceEEEeCC-CHHHHHH
Q 036264 64 -PQHLAQS----------------------FAREK-DC-WAVDAPVS-G------GD-IGARDGKLAIFAAG-DSAVVQW 109 (257)
Q Consensus 64 -~~e~~~~----------------------~~~~~-g~-~~~~~pv~-~------~~-~~~~~g~~~~~~~g-~~~~~~~ 109 (257)
..+++.. .+.+. +. .++.+-+. + +. .....+ .+.+|. +.+..++
T Consensus 82 ~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g--~~~~G~~~~~~~~~ 159 (305)
T PRK05708 82 DAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHG--FTWLGDPRNPTAPA 159 (305)
T ss_pred hHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceE--EEEEcCCCCcchHH
Confidence 1111111 11111 10 11211110 0 11 111112 233442 2344566
Q ss_pred HHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHcCCC--HHHHHHHH
Q 036264 110 LTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVG------------------ANLLGLSEGLVFADKAGLD--VRKWMDAI 168 (257)
Q Consensus 110 ~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~------------------~~~~~~~Ea~~l~~~~G~~--~~~~~~~~ 168 (257)
+.++|+..+. +.+..++....+.|++.|.... .....+.|...++++.|++ ++.+.+.+
T Consensus 160 l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~~~~~ 239 (305)
T PRK05708 160 WLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANLHEEV 239 (305)
T ss_pred HHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Confidence 7778877665 5555567788888987665322 2345678888899999875 22232222
Q ss_pred hh----cC-CChHHHHhhhhhhccCCCCCCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHH
Q 036264 169 KG----GA-AGSMAMELYGERMIKKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVA 236 (257)
Q Consensus 169 ~~----~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~ 236 (257)
.. .. ..|.++. |+..+-.++ ..-=.+.+++.++++ |+++|..+.+++.++....
T Consensus 240 ~~~~~~~~~~~sSM~q---------D~~~gR~tE-id~i~G~vvr~a~~~----Gv~~P~~~~l~~~v~~~~~ 298 (305)
T PRK05708 240 QRVIQATAANYSSMYQ---------DVRAGRRTE-ISYLLGYACRAADRH----GLPLPRLQHLQQRLVAHLR 298 (305)
T ss_pred HHHHHhccCCCcHHHH---------HHHcCCcee-ehhhhhHHHHHHHHc----CCCCchHHHHHHHHHHHHH
Confidence 11 11 1111111 111111111 111234688999999 9999999999877665554
No 72
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.00 E-value=9.6e-09 Score=89.43 Aligned_cols=120 Identities=23% Similarity=0.331 Sum_probs=80.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC--eEEEEeCChhhHhHHhhcCCc--ccCCHHHHHHH--------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGY--FLTVFARNPSKALHLQSQGAF--LATSPQHLAQS-------------------- 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~--~V~v~dr~~~~~~~l~~~g~~--~~~s~~e~~~~-------------------- 70 (257)
+||+|||+|.||..++..|.+.|+ +|++|||++++.+.+.+.|.. ...++++++..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~l 86 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAAEI 86 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHHHH
Confidence 689999999999999999999995 899999999888877666532 23344443322
Q ss_pred ----------------------HHH---hcCccEEec-cCCCCcc-ccc-------CcceEEEe---CCCHHHHHHHHHH
Q 036264 71 ----------------------FAR---EKDCWAVDA-PVSGGDI-GAR-------DGKLAIFA---AGDSAVVQWLTPL 113 (257)
Q Consensus 71 ----------------------~~~---~~g~~~~~~-pv~~~~~-~~~-------~g~~~~~~---~g~~~~~~~~~~l 113 (257)
.+. ..++.|+.+ |+.++.. +.. .+..+++. +++++.++.++++
T Consensus 87 ~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l 166 (307)
T PRK07502 87 APHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAF 166 (307)
T ss_pred HhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHH
Confidence 111 134567776 8876432 121 22222232 4578889999999
Q ss_pred HHHhCC-ceEeCCcchHHHHHH
Q 036264 114 FEVLGK-PTFMGEAGCGQSCKI 134 (257)
Q Consensus 114 l~~~g~-~~~~g~~g~a~~~kl 134 (257)
|+.+|. ++++++..-...+-+
T Consensus 167 ~~~lG~~~~~~~~~~hD~~~A~ 188 (307)
T PRK07502 167 WRALGARVEEMDPEHHDLVLAI 188 (307)
T ss_pred HHHcCCEEEEcCHHHHhHHHHH
Confidence 999999 778776443333333
No 73
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.98 E-value=3.3e-08 Score=86.11 Aligned_cols=149 Identities=16% Similarity=0.134 Sum_probs=90.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHH-hhcCCcccCCHHHHHHH---------------H----HH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHL-QSQGAFLATSPQHLAQS---------------F----AR 73 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l-~~~g~~~~~s~~e~~~~---------------~----~~ 73 (257)
.++|+|||+|+||.++|.+|...|++|++++|++++.... .+.|+... ++++++++ . +.
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~ 95 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQAEVYEEEIE 95 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999998875544333 34466544 66666655 1 11
Q ss_pred h---cCccE---------------------E-eccCCCCcc-----cccCcceEEE-eCCC--HHHHHHHHHHHHHhCC-
Q 036264 74 E---KDCWA---------------------V-DAPVSGGDI-----GARDGKLAIF-AAGD--SAVVQWLTPLFEVLGK- 119 (257)
Q Consensus 74 ~---~g~~~---------------------~-~~pv~~~~~-----~~~~g~~~~~-~~g~--~~~~~~~~~ll~~~g~- 119 (257)
+ .+..+ + -+|..++.. ..+.|...++ +..+ .++.+.+..++..+|.
T Consensus 96 ~~Lk~g~iL~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~ 175 (330)
T PRK05479 96 PNLKEGAALAFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGT 175 (330)
T ss_pred hcCCCCCEEEECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 1 11111 1 112222210 0334443444 5555 8889999999999997
Q ss_pred ce-----EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 036264 120 PT-----FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKW 164 (257)
Q Consensus 120 ~~-----~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 164 (257)
.. .+.+.--.....- +..+..+...++..++......|.+|+..
T Consensus 176 ~~g~~~ttf~~e~~~dl~ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~A 224 (330)
T PRK05479 176 RAGVIETTFKEETETDLFGE-QAVLCGGLTELIKAGFETLVEAGYQPEMA 224 (330)
T ss_pred ccceeeeeecccccccchhh-HHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 43 1111110111111 23344555667777888899999998853
No 74
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.96 E-value=1.2e-07 Score=82.31 Aligned_cols=208 Identities=19% Similarity=0.170 Sum_probs=123.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCC-------------------------------
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATS------------------------------- 63 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s------------------------------- 63 (257)
|||.|+|+|.||+-++..|.++|++|+++.|++. .+++++.|..+.+.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc
Confidence 6899999999999999999999999999999876 88888775433221
Q ss_pred HHHHHHH----------------------HHHhcC--ccEEeccCCCC--------cccccCcce--EEEeCCCHHHHHH
Q 036264 64 PQHLAQS----------------------FAREKD--CWAVDAPVSGG--------DIGARDGKL--AIFAAGDSAVVQW 109 (257)
Q Consensus 64 ~~e~~~~----------------------~~~~~g--~~~~~~pv~~~--------~~~~~~g~~--~~~~~g~~~~~~~ 109 (257)
.++++.. .+.+.. ..++.+-++.+ ......|.+ ..+.++.++..+.
T Consensus 80 ~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~ 159 (307)
T COG1893 80 LEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKA 159 (307)
T ss_pred HHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHHH
Confidence 1122211 111110 01222111111 111111221 1222334577888
Q ss_pred HHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcC--CCHH---
Q 036264 110 LTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVG---------------------ANLLGLSEGLVFADKAG--LDVR--- 162 (257)
Q Consensus 110 ~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~---------------------~~~~~~~Ea~~l~~~~G--~~~~--- 162 (257)
+.++|+..+. +.+..++-.....|++.|.... .....+.|....+.+.| ++.+
T Consensus 160 i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~~~~~~ 239 (307)
T COG1893 160 LAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELPEEVVE 239 (307)
T ss_pred HHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 8888877777 6666677888888887775444 34557778888898988 4443
Q ss_pred HHHHHHhhc--CCChHHHHhhhhhhccCCCCCCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHC
Q 036264 163 KWMDAIKGG--AAGSMAMELYGERMIKKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVAN 237 (257)
Q Consensus 163 ~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~ 237 (257)
.+....... ...|.+.+ |...+..++ .--=...+++.|+++ |+++|..+.++++.+.....
T Consensus 240 ~v~~~~~~~~~~~~sSM~q---------Dl~~gr~tE-id~i~G~vv~~a~~~----gi~~P~~~~L~~lvk~~e~~ 302 (307)
T COG1893 240 RVLAVIRATDAENYSSMLQ---------DLEKGRPTE-IDAINGAVVRLAKKH----GLATPVNDTLYALLKAKEAE 302 (307)
T ss_pred HHHHHHHhcccccCchHHH---------HHHcCCccc-HHHHhhHHHHHHHHh----CCCCcHHHHHHHHHHHHHHh
Confidence 333333333 11222222 111111111 111234688999999 99999999999988776653
No 75
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.95 E-value=4.8e-08 Score=82.85 Aligned_cols=194 Identities=15% Similarity=0.137 Sum_probs=130.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC--CeEEEEeCChhhHhHHhhcCCcc-cCCHHHHHHH--------------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG--YFLTVFARNPSKALHLQSQGAFL-ATSPQHLAQS-------------------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g--~~V~v~dr~~~~~~~l~~~g~~~-~~s~~e~~~~-------------------- 70 (257)
++||+.||+|.+|.+-...++-.- .+|++.|.+..+...+......+ ..-++|++++
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 369999999999999888776553 37889999999888776543332 2234444444
Q ss_pred -----------------------------------------------------------HH--HhcCcc--EEeccCCCC
Q 036264 71 -----------------------------------------------------------FA--REKDCW--AVDAPVSGG 87 (257)
Q Consensus 71 -----------------------------------------------------------~~--~~~g~~--~~~~pv~~~ 87 (257)
.+ ...|+. +++.|-+-.
T Consensus 81 lvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpefla 160 (481)
T KOG2666|consen 81 LVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLA 160 (481)
T ss_pred eEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhc
Confidence 11 112332 344453211
Q ss_pred cccccC---cceEEEeCCC--H---HHHHHHHHHHHHhCC--ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 036264 88 DIGARD---GKLAIFAAGD--S---AVVQWLTPLFEVLGK--PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKA 157 (257)
Q Consensus 88 ~~~~~~---g~~~~~~~g~--~---~~~~~~~~ll~~~g~--~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~ 157 (257)
.-.+.. ..-.+++||. + .+++.+..+++..-. -+.....-+++..|++.|.+.+--+..++-..++|++.
T Consensus 161 egtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceat 240 (481)
T KOG2666|consen 161 EGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEAT 240 (481)
T ss_pred ccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 111110 0114777874 3 444555566666544 44445578999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCChHHHHhhhhhhccCCCCCCcccchHHhhHHHHHHHHhhcccccCCC
Q 036264 158 GLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVV 220 (257)
Q Consensus 158 G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~ 220 (257)
|.|..++..+++..+. .+++.++. +.||.-+|+.||+-.++-.++.+ |+|
T Consensus 241 gadv~eva~avg~d~r-------ig~kfl~a--svgfggscfqkdilnlvyice~l----nlp 290 (481)
T KOG2666|consen 241 GADVSEVAYAVGTDSR-------IGSKFLNA--SVGFGGSCFQKDILNLVYICECL----NLP 290 (481)
T ss_pred CCCHHHHHHHhccccc-------ccHHHhhc--ccCcCchhHHHHHHHHHHHHhcC----CCh
Confidence 9999999888877542 22222222 35788899999999999999988 754
No 76
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.88 E-value=5.9e-08 Score=84.44 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=89.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCC-hhhHhHHhhcCCcccCCHHHHHHH-------------------HHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARN-PSKALHLQSQGAFLATSPQHLAQS-------------------FAR 73 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~-~~~~~~l~~~g~~~~~s~~e~~~~-------------------~~~ 73 (257)
.+||+|||+|+||.+++.+|.+.|++|+++++. +++.+.+.+.|+... ++.+++.+ .+.
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~ 81 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYEAEIQ 81 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHHHHHH
Confidence 468999999999999999999999998876544 455666666677643 46666544 011
Q ss_pred h------------------------cCccE-EeccCCCCcc-----cccCcceEEE-eCC--CHHHHHHHHHHHHHhCCc
Q 036264 74 E------------------------KDCWA-VDAPVSGGDI-----GARDGKLAIF-AAG--DSAVVQWLTPLFEVLGKP 120 (257)
Q Consensus 74 ~------------------------~g~~~-~~~pv~~~~~-----~~~~g~~~~~-~~g--~~~~~~~~~~ll~~~g~~ 120 (257)
. .+..+ ..+|..++.. ..+.|...++ ++. +.+..+.+..+++.+|.+
T Consensus 82 ~~l~~g~iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 82 PLLKEGKTLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred hhCCCCcEEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 1 01111 1224333221 0044543443 443 578889999999999875
Q ss_pred -------e---EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036264 121 -------T---FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGG 171 (257)
Q Consensus 121 -------~---~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~ 171 (257)
. .+.+.-.+...-++..... .+..+.|++ .+.|++++..+....+.
T Consensus 162 ~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa--~v~~~~eal---v~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 162 RAGVLETTFKEETESDLFGEQAVLCGGLTA--LIKAGFDTL---VEAGYQPELAYFETVHE 217 (314)
T ss_pred ccceeechhHhhhhHHhcCcchhHHhHHHH--HHHHHHHHH---HHcCCCHHHHHHHHHHH
Confidence 2 2222111111112222111 233444665 69999999888876554
No 77
>PLN02712 arogenate dehydrogenase
Probab=98.85 E-value=1.7e-07 Score=89.28 Aligned_cols=112 Identities=21% Similarity=0.270 Sum_probs=73.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH----------------------
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS---------------------- 70 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~---------------------- 70 (257)
..|||||||+|.||..+|..|.+.|++|++|||+... +...+.|+....++++++..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l~ 446 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLP 446 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHHH
Confidence 3589999999999999999999999999999998653 33444455444455554321
Q ss_pred -------------------------HHHhcCccEE-eccCCCCcccccCc--ceE-----EEeCCCHHH---HHHHHHHH
Q 036264 71 -------------------------FAREKDCWAV-DAPVSGGDIGARDG--KLA-----IFAAGDSAV---VQWLTPLF 114 (257)
Q Consensus 71 -------------------------~~~~~g~~~~-~~pv~~~~~~~~~g--~~~-----~~~~g~~~~---~~~~~~ll 114 (257)
...+.+..|+ ..|++|..... .| ... .+++++.+. .+.+.++|
T Consensus 447 ~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~-~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~ 525 (667)
T PLN02712 447 FQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGK-NGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIF 525 (667)
T ss_pred HhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccc-cchhhhhhhccCcEeCCCcchHHHHHHHHHHH
Confidence 1112345677 56888866431 11 111 233454444 44556889
Q ss_pred HHhCC-ceEeCCc
Q 036264 115 EVLGK-PTFMGEA 126 (257)
Q Consensus 115 ~~~g~-~~~~g~~ 126 (257)
+.+|. ++.+...
T Consensus 526 ~~lGa~vv~ms~e 538 (667)
T PLN02712 526 AREGCRMVEMSCA 538 (667)
T ss_pred HHcCCEEEEeCHH
Confidence 99998 7777653
No 78
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.85 E-value=8.7e-09 Score=73.89 Aligned_cols=55 Identities=38% Similarity=0.567 Sum_probs=46.8
Q ss_pred eEEEEcCChhHHHHHHHHHHCC---CeEEEE-eCChhhHhHHhhc-CCcccC-CHHHHHHH
Q 036264 16 RIGWIGIGLMGSPMASRLLAAG---YFLTVF-ARNPSKALHLQSQ-GAFLAT-SPQHLAQS 70 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g---~~V~v~-dr~~~~~~~l~~~-g~~~~~-s~~e~~~~ 70 (257)
||||||+|+||++|++.|.++| ++|+++ +|++++.+++.+. ++.... +..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQE 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhcc
Confidence 7999999999999999999999 899955 9999999999765 555555 67777753
No 79
>PLN02256 arogenate dehydrogenase
Probab=98.83 E-value=1.9e-07 Score=81.02 Aligned_cols=113 Identities=17% Similarity=0.237 Sum_probs=73.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHH-H---------------------
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQ-S--------------------- 70 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~-~--------------------- 70 (257)
..++|+|||+|.||..++..|.+.|++|++||+++.. +...+.|+....+.++++. .
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l~ 113 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSLP 113 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhhh
Confidence 4579999999999999999999999999999998643 3333345544444444432 1
Q ss_pred ----------------------HHHh---cCccEEec-cCCCCccc--ccCcceEEEe-------CCCHHHHHHHHHHHH
Q 036264 71 ----------------------FARE---KDCWAVDA-PVSGGDIG--ARDGKLAIFA-------AGDSAVVQWLTPLFE 115 (257)
Q Consensus 71 ----------------------~~~~---~g~~~~~~-pv~~~~~~--~~~g~~~~~~-------~g~~~~~~~~~~ll~ 115 (257)
.+.. .+..|+.+ |++|.... ...+...++. ..+++.++.++++++
T Consensus 114 ~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~ 193 (304)
T PLN02256 114 LQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIFE 193 (304)
T ss_pred hhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHHHHH
Confidence 1111 13345555 77765432 1122212222 126788899999999
Q ss_pred HhCC-ceEeCCc
Q 036264 116 VLGK-PTFMGEA 126 (257)
Q Consensus 116 ~~g~-~~~~g~~ 126 (257)
.+|. ++.+...
T Consensus 194 ~lGa~v~~~~~e 205 (304)
T PLN02256 194 EEGCRMVEMSCE 205 (304)
T ss_pred HCCCEEEEeCHH
Confidence 9999 7777753
No 80
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.79 E-value=2.2e-07 Score=76.98 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=37.6
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
|||+||| +|+||++++..|+++||+|++|+|++++.+.+.+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~ 42 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAA 42 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHH
Confidence 6899997 8999999999999999999999999998877654
No 81
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.77 E-value=5.6e-06 Score=71.22 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=48.4
Q ss_pred CeEEEEcCChh--------------------HHHHHHHHHHCCCeEEEEeCChhhH-----hHHhhcCCcccCCHHHHHH
Q 036264 15 TRIGWIGIGLM--------------------GSPMASRLLAAGYFLTVFARNPSKA-----LHLQSQGAFLATSPQHLAQ 69 (257)
Q Consensus 15 ~~IgvIG~G~m--------------------G~~la~~L~~~g~~V~v~dr~~~~~-----~~l~~~g~~~~~s~~e~~~ 69 (257)
|||.|.|.||- |.+||.+|+++||+|++|||++++. +.+.+.|+..++|+.++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 68999999973 8899999999999999999987655 4588889999999988886
Q ss_pred H
Q 036264 70 S 70 (257)
Q Consensus 70 ~ 70 (257)
+
T Consensus 81 ~ 81 (341)
T TIGR01724 81 H 81 (341)
T ss_pred C
Confidence 6
No 82
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.74 E-value=1.1e-07 Score=68.19 Aligned_cols=90 Identities=16% Similarity=0.026 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCChHHHHhhhhhhccCCCC--CCcccchHHhhHH
Q 036264 127 GCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGSMAMELYGERMIKKDFR--PGGFAEYMVKDMG 204 (257)
Q Consensus 127 g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~~~kd~~ 204 (257)
..++.+|+..|.+.++.++.++|...+|++.|+|..++.+.++.....+ ..-+. +|+.-.|+.||..
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~-----------~~~~~pg~g~GG~ClpkD~~ 70 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIG-----------PHYLRPGPGFGGSCLPKDPY 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTT-----------SSS-S-SSS--SSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccc-----------cccCCCCCCCCCcchhhhHH
Confidence 3688999999999999999999999999999999999999998764322 11122 3566789999999
Q ss_pred HHHHHHhhcccccCCCCchHHHHHHHH
Q 036264 205 MGVDVVEESEDERVVVLPGAALGKQLF 231 (257)
Q Consensus 205 ~~~~~a~~~~~~~g~~~pi~~~~~~~~ 231 (257)
.+...+++. |.+.++++++.+.-
T Consensus 71 ~L~~~~~~~----g~~~~ll~~~~~~N 93 (96)
T PF00984_consen 71 ALIYLAKEL----GYPPQLLEAVININ 93 (96)
T ss_dssp HHHHHHHHT----TSHHHHHHHHHHHH
T ss_pred HHHHHHHHc----CCCHHHHHHHHHhc
Confidence 999999999 99999988887654
No 83
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.71 E-value=4.4e-08 Score=78.62 Aligned_cols=37 Identities=32% Similarity=0.589 Sum_probs=32.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhH
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALH 52 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~ 52 (257)
||+|||+|.||..||..++.+|++|++||++++..+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~ 37 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALER 37 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHh
Confidence 6999999999999999999999999999999987654
No 84
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.69 E-value=8.5e-08 Score=77.29 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=42.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcc-cCCHHHHHHH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL-ATSPQHLAQS 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~-~~s~~e~~~~ 70 (257)
|||+|||+|.+|.++|..|+++||+|+++|.++++.+.+++..... ...+++++.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~ 57 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKE 57 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhcc
Confidence 7999999999999999999999999999999999999988654433 3345666655
No 85
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.68 E-value=2.9e-07 Score=80.25 Aligned_cols=64 Identities=30% Similarity=0.412 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036264 102 GDSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAA 173 (257)
Q Consensus 102 g~~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~ 173 (257)
++++++++++++++.+|+ ++++++.+ +. ++..+....++|++.++++.+++++++.+++..+.+
T Consensus 156 t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gf-------i~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G 220 (314)
T PRK08269 156 TDPAVVDRLAALLERIGKVPVVCGPSP-GY-------IVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFG 220 (314)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEecCCC-Cc-------chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 478999999999999999 89998864 32 344566789999999999999999999998876644
No 86
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.68 E-value=8.4e-07 Score=73.39 Aligned_cols=201 Identities=17% Similarity=0.202 Sum_probs=126.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC----eEEEEeCChhhHhH-HhhcCCcccCCHHHHHHH---------------HHHh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGY----FLTVFARNPSKALH-LQSQGAFLATSPQHLAQS---------------FARE 74 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~----~V~v~dr~~~~~~~-l~~~g~~~~~s~~e~~~~---------------~~~~ 74 (257)
|+|||||.|+|..++++++.+.|. ++..+..+...... +.+.|+..+.+..++... .+.+
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls~ 80 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKPQVIESVLSE 80 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeecchhHHHHhhc
Confidence 589999999999999999999985 56666553333333 666687776666666555 0000
Q ss_pred --------------------------cC--ccEEeccCCCCcccccCcceEEEeCC---CHHHHHHHHHHHHHhCCceEe
Q 036264 75 --------------------------KD--CWAVDAPVSGGDIGARDGKLAIFAAG---DSAVVQWLTPLFEVLGKPTFM 123 (257)
Q Consensus 75 --------------------------~g--~~~~~~pv~~~~~~~~~g~~~~~~~g---~~~~~~~~~~ll~~~g~~~~~ 123 (257)
.+ ..++.. +...|.....+.. ++.-| ..++.+.++.++..+|.+..+
T Consensus 81 ~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRv-mpNtp~~v~eg~s-v~~~g~~~~~~D~~l~~~ll~~vG~~~ev 158 (267)
T KOG3124|consen 81 IKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRV-MPNTPSVVGEGAS-VYAIGCHATNEDLELVEELLSAVGLCEEV 158 (267)
T ss_pred CccccccceEEEEEeecccHHHHHHhcCCCCceEEe-cCCChhhhhcCcE-EEeeCCCcchhhHHHHHHHHHhcCcceeC
Confidence 00 111111 1223444445543 33333 356678899999999985555
Q ss_pred CC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCh-HHHHh--hhhhhccCCC-
Q 036264 124 GE---------AGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGS-MAMEL--YGERMIKKDF- 190 (257)
Q Consensus 124 g~---------~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s-~~~~~--~~~~~~~~~~- 190 (257)
.+ .|++.+ +.+..+..+.+. +.++|++++..+++..++..+. .+... ..|..++.+.
T Consensus 159 pE~~iDavTgLsGSgPA-------y~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V~ 228 (267)
T KOG3124|consen 159 PEKCIDAVTGLSGSGPA-------YVFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDVC 228 (267)
T ss_pred cHHhhhHHhhccCCcHH-------HHHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCCC
Confidence 54 244444 444444444444 6899999999998877765433 23322 2344555554
Q ss_pred CCCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCC
Q 036264 191 RPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANG 238 (257)
Q Consensus 191 ~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g 238 (257)
+|+.++..++ ...++- |++.-++.++.+.-.++.+.|
T Consensus 229 SPgG~TI~gl-------h~LE~g----gfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 229 SPGGTTIYGL-------HALEKG----GFRSGLINAVEAATKRARELG 265 (267)
T ss_pred CCCcchHHHH-------HHHHhC----CchhHHHHHHHHHHHHHHHhc
Confidence 6876665544 566777 999999999999988888765
No 87
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.68 E-value=2.2e-06 Score=73.27 Aligned_cols=113 Identities=22% Similarity=0.372 Sum_probs=71.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhh--HhHHhhcCCcc------------------cCCH----HHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSK--ALHLQSQGAFL------------------ATSP----QHLAQ 69 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~--~~~l~~~g~~~------------------~~s~----~e~~~ 69 (257)
.++|+|+|+|.||..+|+.|.++|+.|.+|+++.+. .+.-.+.|+.- ...| .++++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~ 82 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVLK 82 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHHH
Confidence 579999999999999999999999988777665443 22222222211 1111 11111
Q ss_pred H-----------------------HHHhcC---ccEEec-cCCCC--cccccCcceEEEeCC---CHHHHHHHHHHHHHh
Q 036264 70 S-----------------------FAREKD---CWAVDA-PVSGG--DIGARDGKLAIFAAG---DSAVVQWLTPLFEVL 117 (257)
Q Consensus 70 ~-----------------------~~~~~g---~~~~~~-pv~~~--~~~~~~g~~~~~~~g---~~~~~~~~~~ll~~~ 117 (257)
. ...+.. ..|+.+ |++|+ ....-.+..+++.-. +.+.++.++++|+.+
T Consensus 83 ~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ 162 (279)
T COG0287 83 ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEAL 162 (279)
T ss_pred HhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 1 122222 257776 89988 344444554555544 356888999999999
Q ss_pred CC-ceEeCCc
Q 036264 118 GK-PTFMGEA 126 (257)
Q Consensus 118 g~-~~~~g~~ 126 (257)
|. ++++...
T Consensus 163 ga~~v~~~~e 172 (279)
T COG0287 163 GARLVEMDAE 172 (279)
T ss_pred CCEEEEcChH
Confidence 99 7777653
No 88
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.67 E-value=8.7e-07 Score=86.02 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=43.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CeEEEEeCChhhHhHHhhcCCc--ccCCHHHHHH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAG--YFLTVFARNPSKALHLQSQGAF--LATSPQHLAQ 69 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g--~~V~v~dr~~~~~~~l~~~g~~--~~~s~~e~~~ 69 (257)
.||+|||+|+||.+++..|.++| ++|++|||++++.+.+.+.|+. ...+..+++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~ 62 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVS 62 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhc
Confidence 58999999999999999999999 4899999999988877766653 2334444443
No 89
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.65 E-value=3e-07 Score=74.31 Aligned_cols=57 Identities=26% Similarity=0.297 Sum_probs=41.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCC-hhhHhHHhhc-CCc-ccCCHHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARN-PSKALHLQSQ-GAF-LATSPQHLAQS 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~-~~~~~~l~~~-g~~-~~~s~~e~~~~ 70 (257)
+|+|+|+|.|++|+++|.+|+++||+|++-+|+ +++.+...+. +.. ...+++++++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~ 60 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAAL 60 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhc
Confidence 479999999999999999999999999999655 5444444432 222 23456666654
No 90
>PLN02712 arogenate dehydrogenase
Probab=98.63 E-value=2.7e-06 Score=81.26 Aligned_cols=53 Identities=26% Similarity=0.401 Sum_probs=41.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHL 67 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~ 67 (257)
+|+|+|||+|.||..++..|.+.|++|++|||+..+ +...+.|+....+++++
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~ 104 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDL 104 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHH
Confidence 479999999999999999999999999999998554 33444565555555553
No 91
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.61 E-value=3e-06 Score=73.10 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=92.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh-----------hcC-------------CcccCCHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ-----------SQG-------------AFLATSPQHLAQ 69 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~e~~~ 69 (257)
.+||+|||.|.||+.||..++..|++|+++|++++..++.. +.| +....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 46899999999999999999998899999999977654332 112 11122222 111
Q ss_pred H---------------------------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCC--
Q 036264 70 S---------------------------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAG-- 102 (257)
Q Consensus 70 ~---------------------------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g-- 102 (257)
+ ....+.-.|+....+..+.- -.++=++.|
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~---m~LVEvI~g~~ 158 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPL---MPLVEVIRGEK 158 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCc---ceeEEEecCCC
Confidence 1 00011222333332222111 123445555
Q ss_pred -CHHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036264 103 -DSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAA 173 (257)
Q Consensus 103 -~~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~ 173 (257)
++++++++.++...+++ ++.+.+. .|.. .|- +....+.|+..+..+-..+++++-.++..+.+
T Consensus 159 T~~e~~~~~~~~~~~igK~~vv~~D~-pGFi----~NR---il~~~~~eA~~l~~eGva~~e~ID~~~~~~~G 223 (307)
T COG1250 159 TSDETVERVVEFAKKIGKTPVVVKDV-PGFI----VNR---LLAALLNEAIRLLEEGVATPEEIDAAMRQGLG 223 (307)
T ss_pred CCHHHHHHHHHHHHHcCCCCEeecCC-Ccee----hHh---HHHHHHHHHHHHHHhCCCCHHHHHHHHHhccC
Confidence 58999999999999999 6444442 2222 222 23567789999998888999999888876543
No 92
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.57 E-value=3.1e-06 Score=71.30 Aligned_cols=185 Identities=18% Similarity=0.137 Sum_probs=117.1
Q ss_pred CCeEEEEeCChhhHhHHhhc-CCcccCCHHHHHHH------------------HHHh---cCccEEec------------
Q 036264 37 GYFLTVFARNPSKALHLQSQ-GAFLATSPQHLAQS------------------FARE---KDCWAVDA------------ 82 (257)
Q Consensus 37 g~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~------------------~~~~---~g~~~~~~------------ 82 (257)
.++|++|+|++++.+.+.+. |+...+++.+++.+ .+.. .+..+++.
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~~ 88 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLSQL 88 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHHHH
Confidence 36899999999999888765 87777888877655 1110 11111110
Q ss_pred -----cC----CCCcccccCcceEEEeCC--CHHHHHHHHHHHHHhCCceEeCC--cchHHHHHHHHHHHHHHHHHHHHH
Q 036264 83 -----PV----SGGDIGARDGKLAIFAAG--DSAVVQWLTPLFEVLGKPTFMGE--AGCGQSCKIANQIVVGANLLGLSE 149 (257)
Q Consensus 83 -----pv----~~~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~~g~~~~~g~--~g~a~~~kl~~n~~~~~~~~~~~E 149 (257)
++ ...+.....|...+..+. +++..+.++.+|+.+|.++++.+ ......+--+...+.+..+..+.+
T Consensus 89 ~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA~~~~~~~al~~ 168 (245)
T TIGR00112 89 LGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYVFLFIEALAD 168 (245)
T ss_pred cCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHHHHHHHHHHHHH
Confidence 11 112223334443344332 46778899999999999777776 333444444556677777777776
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcCCChH-HHHhh--hh-hhccCCCCCCcccchHHhhHHHHHHHHhhcccccCCCCchHH
Q 036264 150 GLVFADKAGLDVRKWMDAIKGGAAGSM-AMELY--GE-RMIKKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAA 225 (257)
Q Consensus 150 a~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~~~--~~-~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~ 225 (257)
+ +.+.|+++++..+++.....++. ++... .+ .+.+.-.+||.++..++ +..++. |+.--+.+
T Consensus 169 ~---~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT~~gl-------~~Le~~----~~~~~~~~ 234 (245)
T TIGR00112 169 A---GVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTIAGL-------AVLEEK----GVRGAVIE 234 (245)
T ss_pred H---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHHHHHH-------HHHHHC----ChHHHHHH
Confidence 6 88899999999998877654333 33222 22 23444456777666544 566677 88888888
Q ss_pred HHHHHHHHHH
Q 036264 226 LGKQLFSAMV 235 (257)
Q Consensus 226 ~~~~~~~~a~ 235 (257)
++.+.++++.
T Consensus 235 a~~aa~~r~~ 244 (245)
T TIGR00112 235 AVEAAVRRSR 244 (245)
T ss_pred HHHHHHHHhc
Confidence 8888887764
No 93
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.52 E-value=3.8e-06 Score=81.06 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=35.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALH 52 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~ 52 (257)
..||+|||.|.||..||..++.+|++|++||++++..+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~ 351 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDL 351 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence 358999999999999999999999999999999887543
No 94
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.46 E-value=5.4e-06 Score=79.82 Aligned_cols=39 Identities=31% Similarity=0.416 Sum_probs=34.5
Q ss_pred CCeEEEEcCChhHHHHHHHHH-HCCCeEEEEeCChhhHhH
Q 036264 14 TTRIGWIGIGLMGSPMASRLL-AAGYFLTVFARNPSKALH 52 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~-~~g~~V~v~dr~~~~~~~ 52 (257)
..||+|||.|.||..||..++ ++|++|++||++++..+.
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~ 343 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINN 343 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 458999999999999999998 589999999999876544
No 95
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.45 E-value=4.2e-06 Score=80.93 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=35.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALH 52 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~ 52 (257)
..+|+|||.|.||..||..++.+|++|++||++++..++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~ 373 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDR 373 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHH
Confidence 458999999999999999999999999999999987654
No 96
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.44 E-value=6.4e-06 Score=79.42 Aligned_cols=144 Identities=13% Similarity=0.053 Sum_probs=88.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh-----------cC-------------CcccCCHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS-----------QG-------------AFLATSPQHLAQ 69 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~ 69 (257)
..||+|||.|.||..||..++.+|++|+++|++++..++..+ .| ++.+.+.+++ .
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF-D 391 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 458999999999999999999999999999999887654221 11 2223333222 1
Q ss_pred H--------------------HHH-------------------------hcCccEEeccCCCCcccccCcceEEEeCC--
Q 036264 70 S--------------------FAR-------------------------EKDCWAVDAPVSGGDIGARDGKLAIFAAG-- 102 (257)
Q Consensus 70 ~--------------------~~~-------------------------~~g~~~~~~pv~~~~~~~~~g~~~~~~~g-- 102 (257)
+ .+. .+.-.++....+..+ .. -.++=++.|
T Consensus 392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~-~~--~~lvEvv~g~~ 468 (714)
T TIGR02437 392 NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPV-HR--MPLVEVIRGEK 468 (714)
T ss_pred CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCc-cc--CceEeecCCCC
Confidence 1 010 111122222222111 11 123334444
Q ss_pred -CHHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 036264 103 -DSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKG 170 (257)
Q Consensus 103 -~~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 170 (257)
++++++.+..+++.+|+ ++.+.+. .|.. .|-+ ....+.|++.+.+ .|.+++++-.++..
T Consensus 469 Ts~~~~~~~~~~~~~lgk~pv~v~d~-pGfi----~NRl---~~~~~~ea~~l~~-eG~~~~~ID~a~~~ 529 (714)
T TIGR02437 469 SSDETIATVVAYASKMGKTPIVVNDC-PGFF----VNRV---LFPYFGGFSKLLR-DGADFVRIDKVMEK 529 (714)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCCc-ccch----HHHH---HHHHHHHHHHHHH-CCCCHHHHHHHHHh
Confidence 68999999999999999 7777652 2222 3332 3445688888875 45888887766644
No 97
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.37 E-value=3.6e-06 Score=72.32 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC-CHHHHHH------HHhhcC-CChH-HHHhhh---h--hhccCCCCC
Q 036264 128 CGQSCKIANQIVVGANLLGLSEGLVFADKA-GL-DVRKWMD------AIKGGA-AGSM-AMELYG---E--RMIKKDFRP 192 (257)
Q Consensus 128 ~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~-G~-~~~~~~~------~~~~~~-~~s~-~~~~~~---~--~~~~~~~~~ 192 (257)
....+.+.+|.-.+++..++.|...+++.. .- .+.++.+ ++.+-. +.+. ..+.+. . .+.......
T Consensus 236 fvdGL~~g~NTkaAi~r~Gl~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~ 315 (372)
T KOG2711|consen 236 FVDGLGLGNNTKAAIIRLGLLEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLN 315 (372)
T ss_pred hhhhccCCcchHHHHHHhhHHHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhC
Confidence 334455678999999999999999998763 33 4444433 333321 1111 111110 0 000000001
Q ss_pred CcccchHHhhHHHHHHHHhhcccccCC--CCchHHHHHHHHHHHHHCCCCCCChHHHHHHHHH
Q 036264 193 GGFAEYMVKDMGMGVDVVEESEDERVV--VLPGAALGKQLFSAMVANGDGKLGTQGLVSVIER 253 (257)
Q Consensus 193 ~~~~~~~~kd~~~~~~~a~~~~~~~g~--~~pi~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 253 (257)
|. ...+.--.+.+.+..++. ++ ..|++.+++++. ++++...++++.++.
T Consensus 316 Gq-~~QG~~Ta~~Vy~~L~~~----~l~~kfPlftaVykI~-------~~~~~~~~lle~l~~ 366 (372)
T KOG2711|consen 316 GQ-KLQGPATAKEVYELLQKK----GLVEKFPLFTAVYKIC-------YERLPPQALLECLRN 366 (372)
T ss_pred CC-cccCcHHHHHHHHHHHHc----ChhhhCcHHHHHHHHH-------hcCCCHHHHHHHHhc
Confidence 11 111233445677888888 88 899999999988 356677788777764
No 98
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.36 E-value=1.2e-05 Score=77.55 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=35.0
Q ss_pred CCeEEEEcCChhHHHHHHHHH-HCCCeEEEEeCChhhHhH
Q 036264 14 TTRIGWIGIGLMGSPMASRLL-AAGYFLTVFARNPSKALH 52 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~-~~g~~V~v~dr~~~~~~~ 52 (257)
..||+|||+|.||..||..++ .+|++|++||++++..+.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~ 348 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINH 348 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 468999999999999999999 889999999999876544
No 99
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.35 E-value=2.9e-06 Score=69.29 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=42.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc-CCccc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ-GAFLA 61 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~-g~~~~ 61 (257)
.++|+|+|+|+||..+++.|.+.|++|+++|+++++.+.+.+. +....
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v 76 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV 76 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE
Confidence 4789999999999999999999999999999999988888765 65544
No 100
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.28 E-value=1.9e-06 Score=74.42 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=44.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~ 70 (257)
.++|||||+|.||.++|.+|...|++|++|+|.....+.....|..+. +++|++..
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ 71 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRT 71 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhc
Confidence 468999999999999999999999999999886544444444566543 67777765
No 101
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.26 E-value=9.8e-06 Score=69.70 Aligned_cols=109 Identities=23% Similarity=0.201 Sum_probs=71.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh-cCCcccCCHHHHHHH----------------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS-QGAFLATSPQHLAQS---------------------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~---------------------- 70 (257)
..+|||||.|+||.-+|..|.++||.|++.+|+. -+.+++ .|..-.+.+.+.+.+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsiekilatyp 129 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILATYP 129 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHHHhcC
Confidence 4589999999999999999999999999999985 333333 355444455555544
Q ss_pred -------------------------HHHhcCccEEec-cCCCCcccccCcc-eEEEe----CCC----HHHHHHHHHHHH
Q 036264 71 -------------------------FAREKDCWAVDA-PVSGGDIGARDGK-LAIFA----AGD----SAVVQWLTPLFE 115 (257)
Q Consensus 71 -------------------------~~~~~g~~~~~~-pv~~~~~~~~~g~-~~~~~----~g~----~~~~~~~~~ll~ 115 (257)
...++.+..+.+ |++|........+ +.++. .|+ ++.++.+.++|.
T Consensus 130 fqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~ 209 (480)
T KOG2380|consen 130 FQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFA 209 (480)
T ss_pred chhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHH
Confidence 111345555655 7776542221111 23332 233 678888889999
Q ss_pred HhCC-ceEeC
Q 036264 116 VLGK-PTFMG 124 (257)
Q Consensus 116 ~~g~-~~~~g 124 (257)
+.+. .+++.
T Consensus 210 cegckmVemS 219 (480)
T KOG2380|consen 210 CEGCKMVEMS 219 (480)
T ss_pred hcCCeEEEEE
Confidence 9887 66654
No 102
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.26 E-value=2.9e-05 Score=63.34 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=35.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHL 53 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l 53 (257)
...|+|||.|.||+.||..-+.+|++|.++|++++...+.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A 50 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRA 50 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHH
Confidence 4579999999999999999999999999999998876543
No 103
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.23 E-value=7.3e-07 Score=67.18 Aligned_cols=43 Identities=30% Similarity=0.495 Sum_probs=34.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEE-EeCChhhHhHHhh
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTV-FARNPSKALHLQS 55 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v-~dr~~~~~~~l~~ 55 (257)
..+||+|||.|++|.+|+..|.++||+|.. |+|++++.+++.+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~ 52 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAA 52 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccc
Confidence 468999999999999999999999999866 5898887777664
No 104
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.21 E-value=6e-05 Score=67.05 Aligned_cols=114 Identities=15% Similarity=0.197 Sum_probs=70.4
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHC-CCeEEEEeCChhhHhH----HhhcCCcccCCHH----HHHHH-------------
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAA-GYFLTVFARNPSKALH----LQSQGAFLATSPQ----HLAQS------------- 70 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~-g~~V~v~dr~~~~~~~----l~~~g~~~~~s~~----e~~~~------------- 70 (257)
+++|+|||+ |.||..+|+.|.+. +++|++||++.+.... +.+..+.+...|- +++.+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~i 83 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPGSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQL 83 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCeE
Confidence 469999999 99999999999864 8899999986432211 1111111111111 11111
Q ss_pred -------------HHHhcCccEEec-cCCCCcc-cccCcceEEEeCC-CHHHHHHHHHHHHHhCC-ceEeCCcc
Q 036264 71 -------------FAREKDCWAVDA-PVSGGDI-GARDGKLAIFAAG-DSAVVQWLTPLFEVLGK-PTFMGEAG 127 (257)
Q Consensus 71 -------------~~~~~g~~~~~~-pv~~~~~-~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~-~~~~g~~g 127 (257)
...+.+..|+.. |++|+.. ..-.+...+++.. ..+..+.++.+++.+|. ++.+....
T Consensus 84 VtDVgSvK~~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~~aee 157 (370)
T PRK08818 84 WLDVTSIKQAPVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYATPEH 157 (370)
T ss_pred EEECCCCcHHHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEcCHHH
Confidence 222344567766 8888643 2234454555544 44557889999999999 77777643
No 105
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.12 E-value=0.00026 Score=58.89 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=93.4
Q ss_pred CCeEEEEcCChh--------------------HHHHHHHHHHCCCeEEEEeCChh-----hHhHHhhcCCcccCCHHHHH
Q 036264 14 TTRIGWIGIGLM--------------------GSPMASRLLAAGYFLTVFARNPS-----KALHLQSQGAFLATSPQHLA 68 (257)
Q Consensus 14 ~~~IgvIG~G~m--------------------G~~la~~L~~~g~~V~v~dr~~~-----~~~~l~~~g~~~~~s~~e~~ 68 (257)
+|||+|.|.||- |..||-.++++||+|++.++|.+ ..+++.+.|+.++++-.+++
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa 80 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAA 80 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhh
Confidence 478999999974 77899999999999999977643 45666778999988888887
Q ss_pred HH--------------------------------------------------HHHhcCccEEeccCCCCcccccCcceEE
Q 036264 69 QS--------------------------------------------------FAREKDCWAVDAPVSGGDIGARDGKLAI 98 (257)
Q Consensus 69 ~~--------------------------------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~ 98 (257)
+. +.....+.+-+..-.+-|-...++. .+
T Consensus 81 ~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~-yv 159 (340)
T COG4007 81 EHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGH-YV 159 (340)
T ss_pred hcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCce-EE
Confidence 76 0011111111111011111222332 34
Q ss_pred EeCC--------CHHHHHHHHHHHHHhCCceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHH
Q 036264 99 FAAG--------DSAVVQWLTPLFEVLGKPTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADK-AGLDVRKWMD 166 (257)
Q Consensus 99 ~~~g--------~~~~~~~~~~ll~~~g~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~ 166 (257)
+.+. +++..+++.++.++.|+..|+-+...-+.+.=...++....++++.+-...+.+ .|.+.+.+-+
T Consensus 160 iagr~t~g~elATeEQi~r~velaes~Gk~~yv~padv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMIek 236 (340)
T COG4007 160 IAGRSTEGKELATEEQIERCVELAESTGKEVYVLPADVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMIEK 236 (340)
T ss_pred EeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 4431 468899999999999994444443333333333444555666677777666653 6777654433
No 106
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.09 E-value=8.1e-05 Score=55.21 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=46.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--CCeE-EEEeCChhhHhHHhh-cCCcccCCHHHHHHH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAA--GYFL-TVFARNPSKALHLQS-QGAFLATSPQHLAQS 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~--g~~V-~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~ 70 (257)
+||+|||+|.+|......+.+. +.+| .++|+++++.+.+.+ .+....+|.++++.+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~ 60 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLAD 60 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHh
Confidence 4899999999999999999887 3454 478999999988764 488888898888865
No 107
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.04 E-value=3.3e-05 Score=65.89 Aligned_cols=55 Identities=29% Similarity=0.380 Sum_probs=44.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC--Ce-EEEEeCChhhHhHHhhc-CCcccCCHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG--YF-LTVFARNPSKALHLQSQ-GAFLATSPQHLA 68 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g--~~-V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~ 68 (257)
+|||||||+|.||..++..|.+.+ ++ +.+|||++++.+.+.+. +....++.++++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell 59 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELV 59 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHh
Confidence 379999999999999999998764 55 55789999998888654 566667777665
No 108
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=98.00 E-value=0.00019 Score=61.75 Aligned_cols=116 Identities=17% Similarity=0.102 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHcCCC--
Q 036264 105 AVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIV---------------------VGANLLGLSEGLVFADKAGLD-- 160 (257)
Q Consensus 105 ~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~---------------------~~~~~~~~~Ea~~l~~~~G~~-- 160 (257)
+..+.+..+|+..+. +....+.-.....|++.|.. .......+.|...++++.|++
T Consensus 146 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~ 225 (293)
T TIGR00745 146 EAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLP 225 (293)
T ss_pred HHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 445667777777666 66666677777778765542 233455788999999999976
Q ss_pred HHHHHHHHhhc---C--CChHHHHhhhhhhccCCCCCCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHH
Q 036264 161 VRKWMDAIKGG---A--AGSMAMELYGERMIKKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAM 234 (257)
Q Consensus 161 ~~~~~~~~~~~---~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a 234 (257)
.+.+.+.+... . ..|.++ .|+..+..++ +---.+.+++.++++ |+++|..+.+++.++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~sSm~---------~D~~~gr~tE-id~i~G~~v~~a~~~----gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 226 DDEVEELVRAVIRMTAENTSSML---------QDLLRGRRTE-IDAINGAVVRLAEKL----GIDAPVNRTLYALLKAL 290 (293)
T ss_pred HHHHHHHHHHHHhcCCCCCChHH---------HHHHcCCcch-HHHhccHHHHHHHHc----CCCCChHHHHHHHHHHh
Confidence 33233332211 1 111111 1111121111 222335688999999 99999999988877543
No 109
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.95 E-value=2e-05 Score=67.32 Aligned_cols=55 Identities=24% Similarity=0.333 Sum_probs=44.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHC--CCeEE-EEeCChhhHhHHhhc-CC-cccCCHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAA--GYFLT-VFARNPSKALHLQSQ-GA-FLATSPQHLA 68 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~--g~~V~-v~dr~~~~~~~l~~~-g~-~~~~s~~e~~ 68 (257)
.+||||||+|.||..++.+|.+. +++|. +|||++++.+.+.+. +. ...+++++++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell 65 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLA 65 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHh
Confidence 47999999999999999999874 67765 789999998887654 43 4567777764
No 110
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.92 E-value=2.5e-05 Score=68.65 Aligned_cols=64 Identities=20% Similarity=0.337 Sum_probs=45.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccC
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPV 84 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv 84 (257)
..++|||||+|+||+++|+.|...|++|++|||+++..... .....++++++. ...+.++..|.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~----~aDiVil~lP~ 208 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIK----DADIISLHVPA 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHh----cCCEEEEeCCC
Confidence 34789999999999999999999999999999997653322 223445665543 34444555554
No 111
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.90 E-value=0.0002 Score=58.50 Aligned_cols=150 Identities=19% Similarity=0.182 Sum_probs=90.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhH-----------HhhcC--------------CcccCCHHHHHH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALH-----------LQSQG--------------AFLATSPQHLAQ 69 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~-----------l~~~g--------------~~~~~s~~e~~~ 69 (257)
-||+++|.|.+|+.+|.-++..||+|..||..++..+. |.+.| +..++++.|+++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk 83 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK 83 (313)
T ss_pred cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence 48999999999999999999999999999998765432 11222 234667788776
Q ss_pred H----------------------------------------------HHHhcCccEEeccCCCCcccccCcceEEEeCCC
Q 036264 70 S----------------------------------------------FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGD 103 (257)
Q Consensus 70 ~----------------------------------------------~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~ 103 (257)
. -+..+.-..+..|+.+. -...--.++--....
T Consensus 84 ~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPP-yfiPLvElVPaPwTs 162 (313)
T KOG2305|consen 84 GAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPP-YFIPLVELVPAPWTS 162 (313)
T ss_pred hhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCC-cccchheeccCCCCC
Confidence 6 00001111233344221 000000011112346
Q ss_pred HHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036264 104 SAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGA 172 (257)
Q Consensus 104 ~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~ 172 (257)
++.+++.+.+++.+|. ++.....-.|.++ | -...+.++|--++...-++...++-.+++.+-
T Consensus 163 p~tVdrt~~lM~sigq~pV~l~rei~Gf~l----n---riq~Ailne~wrLvasGil~v~dvD~VmS~GL 225 (313)
T KOG2305|consen 163 PDTVDRTRALMRSIGQEPVTLKREILGFAL----N---RIQYAILNETWRLVASGILNVNDVDAVMSAGL 225 (313)
T ss_pred hhHHHHHHHHHHHhCCCCccccccccccee----c---cccHHHHHHHHHHHHccCcchhhHHHHHhcCC
Confidence 8899999999999996 4443332222221 1 22345678888888888887777766666653
No 112
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.90 E-value=0.0012 Score=53.70 Aligned_cols=105 Identities=19% Similarity=0.147 Sum_probs=60.1
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeC-------ChhhHhHHhhc-CCcc--cCCHHHHHHHHHHhcCccEEec-
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFAR-------NPSKALHLQSQ-GAFL--ATSPQHLAQSFAREKDCWAVDA- 82 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr-------~~~~~~~l~~~-g~~~--~~s~~e~~~~~~~~~g~~~~~~- 82 (257)
|||+|||. |.||+.++..|.++||.|++.+- -.....++.+. ...+ ..|... .+.+....|+..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~~~~DlVilavPv~~~~~~i~~~~~~v~Dv~SvK~----~i~~~~~~~vg~H 76 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYIKKADHAFLSVPIDAALNYIESYDNNFVEISSVKW----PFKKYSGKIVSIH 76 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEECCCCEEEEeCCHHHHHHHHHHhCCeEEeccccCH----HHHHhcCCEEecC
Confidence 68999999 99999999999999998864322 12222222221 1111 111111 222334567766
Q ss_pred cCCCCcccccCc--ceEEEeC--CCHHHHHHHHHHHHHhCC-ceEeCCc
Q 036264 83 PVSGGDIGARDG--KLAIFAA--GDSAVVQWLTPLFEVLGK-PTFMGEA 126 (257)
Q Consensus 83 pv~~~~~~~~~g--~~~~~~~--g~~~~~~~~~~ll~~~g~-~~~~g~~ 126 (257)
|++|... +..+ ...++.. .+++..+.++++++ |. ++.+...
T Consensus 77 PMfGp~~-a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~~~~~~t~e 122 (197)
T PRK06444 77 PLFGPMS-YNDGVHRTVIFINDISRDNYLNEINEMFR--GYHFVEMTAD 122 (197)
T ss_pred CCCCCCc-CcccccceEEEECCCCCHHHHHHHHHHHc--CCEEEEeCHH
Confidence 8887332 2221 1233332 25667788999998 56 7666653
No 113
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.85 E-value=6.4e-05 Score=60.20 Aligned_cols=69 Identities=25% Similarity=0.341 Sum_probs=51.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccCCC
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPVSG 86 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv~~ 86 (257)
..++|||||+|++|+.+|+.|..-|.+|++|||+........+.+.. ..+++|++. ...+.++..|.+.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~-~~~l~ell~----~aDiv~~~~plt~ 103 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVE-YVSLDELLA----QADIVSLHLPLTP 103 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEE-ESSHHHHHH----H-SEEEE-SSSST
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccce-eeehhhhcc----hhhhhhhhhcccc
Confidence 35799999999999999999999999999999998766645555663 447777654 4555666677654
No 114
>PRK07574 formate dehydrogenase; Provisional
Probab=97.83 E-value=3.6e-05 Score=68.81 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=51.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccCC
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPVS 85 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv~ 85 (257)
..++|||||+|+||..+|+.|..-|.+|++|||++...+.....++....+++|++ +...+.++..|..
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell----~~aDvV~l~lPlt 259 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLV----SVCDVVTIHCPLH 259 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHh----hcCCEEEEcCCCC
Confidence 34789999999999999999999999999999986443333344666556777765 3445555666654
No 115
>PLN03139 formate dehydrogenase; Provisional
Probab=97.83 E-value=3.8e-05 Score=68.63 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=52.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccCC
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPVS 85 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv~ 85 (257)
..++|||||+|+||..+|+.|..-|.+|++|||++...+...+.|+....++++++. ...+.++..|.+
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~----~sDvV~l~lPlt 266 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLP----KCDVVVINTPLT 266 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHh----hCCEEEEeCCCC
Confidence 357899999999999999999999999999999864444444557666667877763 345556666643
No 116
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.79 E-value=6.7e-05 Score=58.42 Aligned_cols=56 Identities=23% Similarity=0.173 Sum_probs=43.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh-hHhHHhhcCCcccCCHHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS-KALHLQSQGAFLATSPQHLAQS 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~-~~~~l~~~g~~~~~s~~e~~~~ 70 (257)
.++|+|||+|..|.+.|.||..+|.+|++..|..+ ..+...+.|..+. +.+|+++.
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~ 60 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKK 60 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhh
Confidence 36899999999999999999999999999988866 6666677788764 56777665
No 117
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.75 E-value=7.7e-05 Score=57.95 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=38.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC-CeEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG-YFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g-~~V~v~dr~~~~~~~l~~~ 56 (257)
.++|+|||+|.||.+++..|.+.| ++|++|||++++.+.+.+.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 468999999999999999999996 7999999999988887654
No 118
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.75 E-value=6.6e-05 Score=65.59 Aligned_cols=56 Identities=25% Similarity=0.312 Sum_probs=44.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH--CCCeEEEEeCChhhHhHHhhc----C--CcccCCHHHHH
Q 036264 13 STTRIGWIGIGLMGSPMASRLLA--AGYFLTVFARNPSKALHLQSQ----G--AFLATSPQHLA 68 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~--~g~~V~v~dr~~~~~~~l~~~----g--~~~~~s~~e~~ 68 (257)
...+|+|||+|.||..++..+.. ...+|++|||++++.+++.+. + +.++.++++++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av 187 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAV 187 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHH
Confidence 34689999999999999986654 446899999999999988764 4 45567777665
No 119
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.74 E-value=0.00058 Score=55.81 Aligned_cols=56 Identities=20% Similarity=0.410 Sum_probs=43.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--CC-eEEEEeCChhhHhHHhhc-CCcccCCHHHHHHH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAA--GY-FLTVFARNPSKALHLQSQ-GAFLATSPQHLAQS 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~--g~-~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~ 70 (257)
|+||+||+|.+|..+..-+... .+ .|.+|||+.+++..+.+. +.+.+++++|.+..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~ 60 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAE 60 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhc
Confidence 5899999999999998876543 24 588999999999988765 55556778877644
No 120
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.72 E-value=9.7e-05 Score=56.39 Aligned_cols=43 Identities=30% Similarity=0.387 Sum_probs=39.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCe-EEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYF-LTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~-V~v~dr~~~~~~~l~~~ 56 (257)
..++.|||+|.+|++++..|.+.|.+ |+++||+.++++.+.+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~ 55 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEE 55 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999985 99999999999998764
No 121
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.71 E-value=5.1e-05 Score=58.78 Aligned_cols=45 Identities=36% Similarity=0.490 Sum_probs=40.6
Q ss_pred EEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccC
Q 036264 17 IGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLAT 62 (257)
Q Consensus 17 IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~ 62 (257)
|.|+|+|.||..+|..|.++|++|.++.|++ +.+.+.+.|.....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~ 45 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITG 45 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEe
Confidence 7899999999999999999999999999998 88888888776643
No 122
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.68 E-value=7.6e-05 Score=62.05 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=38.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
|+|.|||+|.+|..+|+.|.+.||+|++.+++++++++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~ 41 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLA 41 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhh
Confidence 68999999999999999999999999999999999888544
No 123
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.68 E-value=0.0005 Score=58.01 Aligned_cols=54 Identities=26% Similarity=0.309 Sum_probs=43.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC---Ce-EEEEeCChhhHhHHhhcCCcccCCHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG---YF-LTVFARNPSKALHLQSQGAFLATSPQHLA 68 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g---~~-V~v~dr~~~~~~~l~~~g~~~~~s~~e~~ 68 (257)
.+|||+||+|.||..++..|.+.+ ++ +.+++|++++.+.+.+. +.++.|+++++
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll 59 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLL 59 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHh
Confidence 369999999999999999987643 44 45678999888888765 77788888864
No 124
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=97.66 E-value=0.00046 Score=58.97 Aligned_cols=95 Identities=21% Similarity=0.212 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHH---HHhhcCCChHHHHhhhhhhccCCCCCCcccchHHhhH-
Q 036264 129 GQSCKIANQIVVGANLLGLSEGLVFADK-AGLDVRKWMD---AIKGGAAGSMAMELYGERMIKKDFRPGGFAEYMVKDM- 203 (257)
Q Consensus 129 a~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~- 203 (257)
|+.+|+++|.+-++.+++++|+..+.+. .|++++++.+ .++.+...|++++....-+...|.+...-++. ..|.
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~-I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDK-ILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGG-B-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhh-hCCcc
Confidence 6789999999999999999999999985 7888776655 45567788998887776665555322222222 2222
Q ss_pred ------HHHHHHHhhcccccCCCCchHHHHH
Q 036264 204 ------GMGVDVVEESEDERVVVLPGAALGK 228 (257)
Q Consensus 204 ------~~~~~~a~~~~~~~g~~~pi~~~~~ 228 (257)
+...+.|-++ |+|.|++..+.
T Consensus 80 ~~kGtG~Wt~~~a~~~----gvp~p~I~~a~ 106 (291)
T PF00393_consen 80 GQKGTGKWTVQEALEL----GVPAPTIAAAV 106 (291)
T ss_dssp --BSHHHHHHHHHHHH----T---HHHHHHH
T ss_pred CCCCccchHHHHHHHh----CCCccHHHHHH
Confidence 3467778888 99999886543
No 125
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.61 E-value=0.00016 Score=63.73 Aligned_cols=67 Identities=25% Similarity=0.381 Sum_probs=48.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccCC
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPVS 85 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv~ 85 (257)
..++|||||+|+||+.+|+.|...|++|++|||++.... ....+... .++++++ ....+.++..|.+
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~~-~~l~ell----~~aDiV~l~lP~t 215 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAEY-RPLEELL----RESDFVSLHVPLT 215 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCEe-cCHHHHH----hhCCEEEEeCCCC
Confidence 357999999999999999999999999999999865432 22334433 4666654 3455566666754
No 126
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.60 E-value=0.00016 Score=62.40 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=49.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEecc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAP 83 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~p 83 (257)
..+|+|||+|.||.++|..|...|.+|++++|++++.+.+.+.+..... ..+ ..+.+...++.+...|
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~-~~~-l~~~l~~aDiVint~P 218 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFP-LNK-LEEKVAEIDIVINTIP 218 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeec-HHH-HHHHhccCCEEEECCC
Confidence 4689999999999999999999999999999999887777666654332 222 1222334455555555
No 127
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00023 Score=63.37 Aligned_cols=43 Identities=28% Similarity=0.319 Sum_probs=39.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC-CeEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG-YFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g-~~V~v~dr~~~~~~~l~~~ 56 (257)
+|+|-|||+|.+|+.+|..|+++| ++|++-||++++.+++.+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~ 44 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL 44 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh
Confidence 478999999999999999999999 8999999999999998765
No 128
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.53 E-value=0.00019 Score=63.14 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=46.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHH-HCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccCC
Q 036264 13 STTRIGWIGIGLMGSPMASRLL-AAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPVS 85 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~-~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv~ 85 (257)
..++|||||+|+||+++|+.|+ ..|.+|++||+++.... ...+....++++++. ...+.++..|..
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~----~aDvIvl~lP~t 211 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVE----GADIVTLHMPAT 211 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHH----hCCEEEEeCCCC
Confidence 3579999999999999999995 45789999999865431 123444456766653 445556666654
No 129
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.40 E-value=0.00036 Score=60.57 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=44.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcc-cCCHHHHHHHHHHhcCccEEeccCC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL-ATSPQHLAQSFAREKDCWAVDAPVS 85 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~-~~s~~e~~~~~~~~~g~~~~~~pv~ 85 (257)
.++|||||+|+||+.+|+.+..-|++|++|||+... .+... ..++++++ ....+.++..|..
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell----~~aDiv~~~lp~t 184 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIM----KKSDFVLISLPLT 184 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHH----hhCCEEEECCCCC
Confidence 478999999999999999887779999999997432 23322 34666654 3445556666654
No 130
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.40 E-value=0.0002 Score=62.45 Aligned_cols=36 Identities=31% Similarity=0.548 Sum_probs=33.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSK 49 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~ 49 (257)
.++|||||+|+||..+|+.|..-|++|++|||++++
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~ 171 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKS 171 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 468999999999999999999999999999997654
No 131
>PRK04148 hypothetical protein; Provisional
Probab=97.38 E-value=0.00047 Score=52.28 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=39.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGA 58 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~ 58 (257)
.+||.+||+| .|..+|..|.+.|++|++.|.++..++...+.+.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~ 60 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGL 60 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC
Confidence 4689999999 9999999999999999999999998888776654
No 132
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.35 E-value=0.00033 Score=60.96 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=34.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALH 52 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~ 52 (257)
++||+|||+|.||..+|..++..|+ +|.++|+++++.+.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~ 41 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQG 41 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHH
Confidence 4799999999999999999999876 99999998876543
No 133
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.35 E-value=0.00049 Score=64.35 Aligned_cols=56 Identities=25% Similarity=0.291 Sum_probs=43.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~ 70 (257)
.++|||||+|+||+.+|+.|..-|++|++|||.... +...+.++...++++|++.+
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~ 193 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLAR 193 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhh
Confidence 468999999999999999999999999999985321 22234466655678877654
No 134
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.31 E-value=0.00046 Score=61.75 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=45.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccCCC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPVSG 86 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv~~ 86 (257)
.++|||||+|+||+.+|+.|..-|++|++||+..... .+.....++++++. ...+..+..|.+.
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~----~aDiV~lh~Plt~ 179 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILE----ECDVISLHTPLTK 179 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHh----hCCEEEEeCcCCC
Confidence 4689999999999999999999999999999864321 12222346666653 3455556666653
No 135
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.29 E-value=0.00038 Score=59.96 Aligned_cols=117 Identities=23% Similarity=0.252 Sum_probs=65.1
Q ss_pred CCeEEEEcCC-hhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc-CCcc--cCCHHHHHHHHHHhcCccEEeccCCCCcc
Q 036264 14 TTRIGWIGIG-LMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ-GAFL--ATSPQHLAQSFAREKDCWAVDAPVSGGDI 89 (257)
Q Consensus 14 ~~~IgvIG~G-~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~-g~~~--~~s~~e~~~~~~~~~g~~~~~~pv~~~~~ 89 (257)
.++|+|||.| .||.+||.+|.++|++|++|++.....+++.++ .+.+ ..++ +.+....-+.|..++|.-+..-.
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~-~~v~~~~ik~GaiVIDvgin~~~- 236 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRP-RLIDADWLKPGAVVIDVGINRID- 236 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEecCCh-hcccHhhccCCcEEEEecccccC-
Confidence 4689999996 999999999999999999998765444443322 2211 2222 23333334566677776544311
Q ss_pred cccCcceEEEeCCCHHHHHHHHHHHHHhCCceE-eCCcchHHHHHHHHHHHH
Q 036264 90 GARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTF-MGEAGCGQSCKIANQIVV 140 (257)
Q Consensus 90 ~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~-~g~~g~a~~~kl~~n~~~ 140 (257)
..|. .-++ ||-+ ++.+.+. .+.+.. -|.+|.-+...+..|++.
T Consensus 237 --~~g~-~kl~-GDvd-f~~~~~~---a~~iTPVPGGVGp~Tva~L~~N~~~ 280 (301)
T PRK14194 237 --DDGR-SRLV-GDVD-FDSALPV---VSAITPVPGGVGPMTIAFLMKNTVT 280 (301)
T ss_pred --CCCC-ccee-cccc-hHHHHhh---cceecCCCCchhHHHHHHHHHHHHH
Confidence 1111 0122 3221 2222222 122222 245677777777788764
No 136
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.28 E-value=0.00061 Score=63.71 Aligned_cols=56 Identities=27% Similarity=0.300 Sum_probs=42.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS 70 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~ 70 (257)
..++|||||+|+||..+|+.|...|++|++|||+... +...+.++... +++|++.+
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~ 194 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLAR 194 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhh
Confidence 3578999999999999999999999999999986432 22334466555 67776643
No 137
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00065 Score=59.52 Aligned_cols=68 Identities=24% Similarity=0.360 Sum_probs=49.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccCCC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPVSG 86 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv~~ 86 (257)
.+++||||+|++|+.+|..+..-|.+|++||+...+. .....+.....++++++. ..++-.+..|.+.
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~----~sDiv~lh~PlT~ 209 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLA----EADILTLHLPLTP 209 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHh----hCCEEEEcCCCCc
Confidence 4689999999999999999999999999999943322 112235566677887764 4555566667654
No 138
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.25 E-value=0.00086 Score=51.57 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=34.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC--eEEEEeCChhhHhHH
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGY--FLTVFARNPSKALHL 53 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~--~V~v~dr~~~~~~~l 53 (257)
|||+|||+ |++|+.+|..|...+. ++.++|+++++++..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~ 42 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGE 42 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceee
Confidence 69999999 9999999999998876 899999998766543
No 139
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.21 E-value=0.0011 Score=57.95 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=48.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccCCC
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPVSG 86 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv~~ 86 (257)
..+++||||+|.+|+++|+.+.-=|.+|..|||++. -+.-...+....+ ++|++ +..++-.+.+|.+.
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell----~~sDii~l~~Plt~ 212 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELL----AESDIISLHCPLTP 212 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHH----HhCCEEEEeCCCCh
Confidence 357999999999999999999865779999999875 2222223455444 66654 45666677777654
No 140
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.20 E-value=0.00097 Score=57.79 Aligned_cols=48 Identities=25% Similarity=0.253 Sum_probs=42.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCccc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLA 61 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~ 61 (257)
..|++|||.|.+|..++..|.+.|.+|+++||++++.+...+.|....
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPF 199 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeee
Confidence 469999999999999999999999999999999988777776676543
No 141
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.18 E-value=0.00074 Score=58.94 Aligned_cols=45 Identities=31% Similarity=0.382 Sum_probs=39.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC-CeEEEEeCChhhHhHHhhc-CC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG-YFLTVFARNPSKALHLQSQ-GA 58 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g-~~V~v~dr~~~~~~~l~~~-g~ 58 (257)
.++|+|||+|.||..++..|...| ++|+++||++++.+.+.+. |.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~ 224 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG 224 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 578999999999999999998865 6899999999998887754 44
No 142
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.16 E-value=0.0011 Score=58.24 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=57.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH--CCCeEEEEeCChhhHhHHhhc----C--CcccCCHHHHHHHHHHhcCccEEec--
Q 036264 13 STTRIGWIGIGLMGSPMASRLLA--AGYFLTVFARNPSKALHLQSQ----G--AFLATSPQHLAQSFAREKDCWAVDA-- 82 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~--~g~~V~v~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~~~~~~g~~~~~~-- 82 (257)
+..++||||+|.+|...+..|.. ...+|.+|||++++.+.+.+. | +..+.+++++++ ..++.+...
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~----~aDiVitaT~s 202 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVE----GCDILVTTTPS 202 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhc----cCCEEEEecCC
Confidence 34689999999999998777754 345899999999999887653 4 455778888763 333333333
Q ss_pred --cCCCCcccccCcceEEEeCCC
Q 036264 83 --PVSGGDIGARDGKLAIFAAGD 103 (257)
Q Consensus 83 --pv~~~~~~~~~g~~~~~~~g~ 103 (257)
|+... .....|..+..+|.+
T Consensus 203 ~~P~~~~-~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 203 RKPVVKA-DWVSEGTHINAIGAD 224 (325)
T ss_pred CCcEecH-HHcCCCCEEEecCCC
Confidence 33211 122456666666654
No 143
>PLN02928 oxidoreductase family protein
Probab=97.15 E-value=0.0011 Score=58.83 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=31.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
.++|||||+|.||+.+|+.|..-|.+|++|||+.
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~ 192 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRRSW 192 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCC
Confidence 4799999999999999999999999999999974
No 144
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.15 E-value=0.001 Score=56.90 Aligned_cols=43 Identities=30% Similarity=0.292 Sum_probs=38.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~ 56 (257)
.+++.|+|+|.+|.+++..|++.|++|+++||++++.+.+.+.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~ 159 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAER 159 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 4589999999999999999999999999999999988877653
No 145
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.15 E-value=0.00075 Score=58.76 Aligned_cols=40 Identities=30% Similarity=0.326 Sum_probs=35.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAG--YFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g--~~V~v~dr~~~~~~~l~ 54 (257)
+||+|||+|.+|.++|..|+..| ++|+++||++++++.+.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a 42 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEA 42 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhH
Confidence 38999999999999999999999 68999999988876654
No 146
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.14 E-value=0.00068 Score=59.09 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=34.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CeEEEEeCChhhHhH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAG--YFLTVFARNPSKALH 52 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g--~~V~v~dr~~~~~~~ 52 (257)
|||+|||+|.+|.++|..|+.+| ++|.++|+++++.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g 40 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEG 40 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhh
Confidence 68999999999999999999999 589999999877653
No 147
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=97.14 E-value=0.012 Score=54.22 Aligned_cols=129 Identities=10% Similarity=0.096 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhC---CceEeCCcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHH
Q 036264 104 SAVVQWLTPLFEVLG---KPTFMGEAG------CGQSCKIANQIVVGANLLGLSEGLVFADK------AGLDVRKWMDAI 168 (257)
Q Consensus 104 ~~~~~~~~~ll~~~g---~~~~~g~~g------~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~------~G~~~~~~~~~~ 168 (257)
.+++++..+.++..- ...+.|+.+ .++.+|.+.|.+....+..++|.+.+.++ .++|..++.+++
T Consensus 278 ~av~~R~~S~~k~~r~~~~~~~~gp~~~~~~~~~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iW 357 (467)
T TIGR00873 278 ESVFARYLSSLKEERVAASKVLSGPLAPEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIW 357 (467)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 455666666665432 122334432 27889999999999999999999999766 788999999999
Q ss_pred hhcC-CChHHHHhhhhhhccC-CC-----CCCcc--cchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHH
Q 036264 169 KGGA-AGSMAMELYGERMIKK-DF-----RPGGF--AEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVA 236 (257)
Q Consensus 169 ~~~~-~~s~~~~~~~~~~~~~-~~-----~~~~~--~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~ 236 (257)
..+. ..|++++......... +. ++.|. +......++.++..+-+. |+|+|.+.++...|.+...
T Consensus 358 r~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~~~i~~~~~~~r~vV~~a~~~----gip~P~ls~aL~y~~~~~s 430 (467)
T TIGR00873 358 RGGCIIRSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEY----GIPVPAFSAALSFYDGYRT 430 (467)
T ss_pred CCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhhc
Confidence 9886 5778777654333221 11 12221 222334557888899999 9999999999988887776
No 148
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.12 E-value=0.00071 Score=58.88 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=32.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKAL 51 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~ 51 (257)
|||+|||+|.||..+|..++..|+ +|+++|++++..+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~ 39 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ 39 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH
Confidence 699999999999999999999887 8999999766433
No 149
>PLN00203 glutamyl-tRNA reductase
Probab=97.08 E-value=0.00096 Score=62.05 Aligned_cols=43 Identities=26% Similarity=0.453 Sum_probs=39.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~~ 56 (257)
..+|+|||+|.||..++.+|...|. +|+++||++++++.+.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~ 309 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREE 309 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Confidence 4689999999999999999999996 799999999999998764
No 150
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.06 E-value=0.0015 Score=51.11 Aligned_cols=54 Identities=26% Similarity=0.300 Sum_probs=41.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLA 68 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~ 68 (257)
.+++.|+|.|..|+.+|+.|...|-+|+|++++|-++-+..-.|..+. +.++++
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~ 76 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEAL 76 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHT
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHH
Confidence 468999999999999999999999999999999988777776788765 566654
No 151
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.04 E-value=0.0014 Score=56.49 Aligned_cols=73 Identities=21% Similarity=0.203 Sum_probs=49.2
Q ss_pred CCeEEEEc-CChhHHHHHHHHHHCCCeEEEEe-CChhhHhHHhhcCCcc-cCCHHHHHHHHHHhcCccEEeccCCC
Q 036264 14 TTRIGWIG-IGLMGSPMASRLLAAGYFLTVFA-RNPSKALHLQSQGAFL-ATSPQHLAQSFAREKDCWAVDAPVSG 86 (257)
Q Consensus 14 ~~~IgvIG-~G~mG~~la~~L~~~g~~V~v~d-r~~~~~~~l~~~g~~~-~~s~~e~~~~~~~~~g~~~~~~pv~~ 86 (257)
..+|+||| .|.||.+||.+|.++|++|++|+ |+++..+...+..+.+ +..-.+.+....-..|..++|.-+..
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDvGin~ 233 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINR 233 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhhcchheecCCCEEEEcCCcc
Confidence 46899999 99999999999999999999995 7764333333333322 11222344444445677788876543
No 152
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.00 E-value=0.0032 Score=57.24 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=32.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSK 49 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~ 49 (257)
.+|.|||+|.+|.++|..|.+.|++|+++|++++.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~ 38 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEA 38 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 58999999999999999999999999999987653
No 153
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.00 E-value=0.0015 Score=57.14 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=37.2
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHHCCC--eEEEEeCChhhHhHH
Q 036264 10 ISPSTTRIGWIGIGLMGSPMASRLLAAGY--FLTVFARNPSKALHL 53 (257)
Q Consensus 10 ~~~~~~~IgvIG~G~mG~~la~~L~~~g~--~V~v~dr~~~~~~~l 53 (257)
|++..+||+|||+|.+|..+|..|+..|. ++.++|+++++++..
T Consensus 2 ~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~ 47 (315)
T PRK00066 2 MKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGD 47 (315)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHH
Confidence 34456799999999999999999999987 899999988765443
No 154
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.99 E-value=0.0015 Score=59.41 Aligned_cols=43 Identities=28% Similarity=0.325 Sum_probs=38.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC-CeEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG-YFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g-~~V~v~dr~~~~~~~l~~~ 56 (257)
..+|+|||+|.||..++..|...| .+|++|||++++.+.+.+.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~ 223 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKE 223 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 468999999999999999999999 7899999999988877654
No 155
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.97 E-value=0.0011 Score=52.63 Aligned_cols=39 Identities=33% Similarity=0.383 Sum_probs=36.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHH
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHL 53 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l 53 (257)
|||+|||+ |..|+.|+.-..++||+|+..-||+++...+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~ 40 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR 40 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc
Confidence 79999995 9999999999999999999999999998765
No 156
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.97 E-value=0.0065 Score=46.60 Aligned_cols=111 Identities=23% Similarity=0.174 Sum_probs=61.4
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhhcCCc----ccCCHHHHHHHHHHhcC--cc--EEeccCCC
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQSQGAF----LATSPQHLAQSFAREKD--CW--AVDAPVSG 86 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~~g~~----~~~s~~e~~~~~~~~~g--~~--~~~~pv~~ 86 (257)
||.|||+|.+|+.++.+|++.|. +++++|.+.-....+..+-.. +-..-.+++.+.+.+.. +. .++..+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 58999999999999999999998 799999875444444433111 11123344444444332 22 22222111
Q ss_pred C--cccccCcceEEEeCCCHHHHHHHHHHHHHhCC-ceEeCCc
Q 036264 87 G--DIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMGEA 126 (257)
Q Consensus 87 ~--~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-~~~~g~~ 126 (257)
. ........+++....+.+....+.+.....+. .+..+..
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~ 123 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGL 123 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 01112233344444455655666677777666 5555543
No 157
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=96.94 E-value=0.033 Score=42.25 Aligned_cols=126 Identities=13% Similarity=0.044 Sum_probs=71.9
Q ss_pred EEEeCCCHHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCh
Q 036264 97 AIFAAGDSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMDAIKGGAAGS 175 (257)
Q Consensus 97 ~~~~~g~~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s 175 (257)
++.+.||++..+.++++++.+|. ++.+.+ ..-...+.+.-+........+..+..++++.|+|.+...+++.
T Consensus 3 ~~~iEgd~~~~~~l~~l~~~lg~~~~~i~~-~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~------ 75 (132)
T PF10728_consen 3 PFAIEGDEEALEVLQELAKELGGRPFEIDS-EQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALL------ 75 (132)
T ss_dssp -EEEEESHHHHHHHHHHHHHTTSEEEE--G-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHH------
T ss_pred EEEEecCHHHHHHHHHHHHHhCCceEEeCH-HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHH------
Confidence 45556699999999999999999 777755 3444445444444444556778889999999999977666653
Q ss_pred HHHHhhhhhhccCCCCCCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHH
Q 036264 176 MAMELYGERMIKKDFRPGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSA 233 (257)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~ 233 (257)
|+++....++.........|-...+.|...+.+..+.+ .-.-|-...+|+.+.+
T Consensus 76 PLi~~t~~n~~~~g~~~alTGP~~RgD~~Tv~kHl~~L----~~~~p~~~~lY~~ls~ 129 (132)
T PF10728_consen 76 PLIRETLENILQLGPADALTGPAARGDIGTVAKHLAAL----DDHDPELKELYRALSR 129 (132)
T ss_dssp HHHHHHHHHHHHS-HHHH--SCCHCTHHHHHHHHHHHC----CCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhccCCCcccCCHHHHHHHHHHH----hccCHHHHHHHHHHHH
Confidence 23333333333222111223344567777776666666 3222555545554443
No 158
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=96.93 E-value=0.021 Score=52.42 Aligned_cols=145 Identities=12% Similarity=0.121 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHhC---CceEeCCcch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHh
Q 036264 104 SAVVQWLTPLFEVLG---KPTFMGEAGC-----GQSCKIANQIVVGANLLGLSEGLVFADK------AGLDVRKWMDAIK 169 (257)
Q Consensus 104 ~~~~~~~~~ll~~~g---~~~~~g~~g~-----a~~~kl~~n~~~~~~~~~~~Ea~~l~~~------~G~~~~~~~~~~~ 169 (257)
++++.++.+.++..- ...+.|+.+. ++.+|.+.|.+.+..+..++|.+.+.++ .++|..++.+++.
T Consensus 271 ~AvfaR~~S~~k~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr 350 (459)
T PRK09287 271 EAVFARYLSSLKDQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWR 350 (459)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC
Confidence 456666666665432 1333444332 7889999999999999999999999766 4677899999999
Q ss_pred hcC-CChHHHHhhhhhhccC-C-----CCCCcc--cchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHHHCCCC
Q 036264 170 GGA-AGSMAMELYGERMIKK-D-----FRPGGF--AEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMVANGDG 240 (257)
Q Consensus 170 ~~~-~~s~~~~~~~~~~~~~-~-----~~~~~~--~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~~~g~g 240 (257)
.+. ..|++++......... + +.+.|. +.......+.++..+-+. |+|+|.+.++...|+.....-+
T Consensus 351 ~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~----gip~P~ls~aL~y~d~~~~~~~- 425 (459)
T PRK09287 351 GGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQA----GIPVPAFSSALSYYDSYRTARL- 425 (459)
T ss_pred CCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhhhhHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhhcCCc-
Confidence 886 5788777644333221 1 112121 222334456788899999 9999999999976665544322
Q ss_pred CCChHHHHHHHHHhcC
Q 036264 241 KLGTQGLVSVIERING 256 (257)
Q Consensus 241 ~~d~~~~~~~~~~~~~ 256 (257)
...++...|...|
T Consensus 426 ---~anliqaqRd~FG 438 (459)
T PRK09287 426 ---PANLIQAQRDYFG 438 (459)
T ss_pred ---cHHHHHHHHhHhC
Confidence 2345555554443
No 159
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.92 E-value=0.0018 Score=58.69 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=45.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccCC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPVS 85 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv~ 85 (257)
.++|||||+|++|+.+|+.+..-|.+|++||+++.. ...++....+++|++.. .++..+..|.+
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~----~~~~~~~~~~l~ell~~----sDiVslh~Plt 214 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKL----PLGNARQVGSLEELLAQ----SDVVSLHVPET 214 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccc----ccCCceecCCHHHHHhh----CCEEEEcCCCC
Confidence 468999999999999999999999999999987432 11234445577777643 34444455543
No 160
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=96.92 E-value=0.015 Score=49.28 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=60.8
Q ss_pred HHHHHHHCC--CeEEEEeCChhhHhHHhhcCCcccCCH-HHHHHH-----------------------------------
Q 036264 29 MASRLLAAG--YFLTVFARNPSKALHLQSQGAFLATSP-QHLAQS----------------------------------- 70 (257)
Q Consensus 29 la~~L~~~g--~~V~v~dr~~~~~~~l~~~g~~~~~s~-~e~~~~----------------------------------- 70 (257)
+|+.|.++| ++|++||++++..+...+.|+....+. .+++.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~S 80 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVGS 80 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE--S
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeCC
Confidence 688899999 689999999998887766665432111 222222
Q ss_pred ----------HHHhcCccEEec-cCCCC--------cccccCcceEEEeCC---CHHHHHHHHHHHHHhCC-ceEeCC
Q 036264 71 ----------FAREKDCWAVDA-PVSGG--------DIGARDGKLAIFAAG---DSAVVQWLTPLFEVLGK-PTFMGE 125 (257)
Q Consensus 71 ----------~~~~~g~~~~~~-pv~~~--------~~~~~~g~~~~~~~g---~~~~~~~~~~ll~~~g~-~~~~g~ 125 (257)
.....+..|+.. |++|. ....-.|...+++.+ +.+.++.++.+++.+|. ++.+..
T Consensus 81 vK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~ 158 (258)
T PF02153_consen 81 VKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEMDA 158 (258)
T ss_dssp -CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE--H
T ss_pred CCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEcCH
Confidence 222246778877 88876 222224555555533 45788999999999999 777754
No 161
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.91 E-value=0.003 Score=46.41 Aligned_cols=44 Identities=27% Similarity=0.486 Sum_probs=38.7
Q ss_pred EEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcc
Q 036264 17 IGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL 60 (257)
Q Consensus 17 IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~ 60 (257)
|-|+|+|.+|..++..|.+.+.+|++.++++++.+.+.+.|..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~ 44 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEV 44 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccc
Confidence 56999999999999999997779999999999999999888544
No 162
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.91 E-value=0.0013 Score=58.73 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=45.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccCCC
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPVSG 86 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv~~ 86 (257)
..++|||||+|+||+.+|+.|..-|.+|.+||+..... ... ....++++++ ....+..+..|.+.
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell----~~sDiI~lh~PLt~ 179 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELV----QEADILTFHTPLFK 179 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHH----hhCCEEEEeCCCCC
Confidence 35799999999999999999999999999999753211 111 1234666665 34455556677654
No 163
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.90 E-value=0.0022 Score=54.44 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=38.2
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHC-CCeEE-EEeCChhhHhHHhhcCCcccCCHHHHH
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAA-GYFLT-VFARNPSKALHLQSQGAFLATSPQHLA 68 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~-g~~V~-v~dr~~~~~~~l~~~g~~~~~s~~e~~ 68 (257)
+|||+|||+ |.||..++..+.+. +++|. ++|+++++.......++...+++++++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll 58 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVL 58 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhc
Confidence 369999998 99999999988764 56655 478887665443222444455555544
No 164
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.90 E-value=0.0029 Score=57.89 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=43.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLA 68 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~ 68 (257)
..+|+|||+|.+|..+|..+...|.+|+++++++.+.......|+.. .++++++
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell 307 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVV 307 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHH
Confidence 46899999999999999999999999999999988765544456654 3455554
No 165
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.89 E-value=0.0023 Score=54.89 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=38.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC-CeEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG-YFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g-~~V~v~dr~~~~~~~l~~~ 56 (257)
..++.|+|+|.+|.+++..|...| .+|++++|++++.+.+.+.
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~ 166 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKL 166 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 458999999999999999999999 6999999999998888654
No 166
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.87 E-value=0.0013 Score=59.79 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=32.5
Q ss_pred CeEEEEcCChhHHHHHH--HH----HHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIGIGLMGSPMAS--RL----LAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~--~L----~~~g~~V~v~dr~~~~~~~l~ 54 (257)
+||+|||.|.||.+++. .+ ..+|++|.+||+++++.+...
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~ 46 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVE 46 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHH
Confidence 58999999999998665 44 345789999999998877654
No 167
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.86 E-value=0.0017 Score=56.99 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=33.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKA 50 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~ 50 (257)
+||+|||+|.||..+|..++..|+ +|.++|++++++
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~ 43 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIP 43 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchh
Confidence 699999999999999999999996 899999998854
No 168
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.84 E-value=0.0024 Score=58.18 Aligned_cols=43 Identities=30% Similarity=0.366 Sum_probs=38.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~~ 56 (257)
..+|+|||+|.||..++..|...|. +|+++||++++.+.+.+.
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~ 225 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEE 225 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH
Confidence 4689999999999999999999997 799999999998877754
No 169
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.80 E-value=0.0024 Score=58.48 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=38.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
|+|.|+|+|.+|..++..|.+.|++|+++++++++.+.+.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~ 41 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQD 41 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence 58999999999999999999999999999999999888765
No 170
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.79 E-value=0.0041 Score=56.38 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=44.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLA 68 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~ 68 (257)
..+|+|+|+|.+|..++..+...|.+|+++|+++.+.......|..+ .+.++++
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal 265 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAA 265 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHH
Confidence 46899999999999999999999999999999998876666567654 3455544
No 171
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.78 E-value=0.0048 Score=53.71 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=57.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH-CC-CeEEEEeCChhhHhHHhhc----CCcc-cCCHHHHHHHHHHhcCccEEec---
Q 036264 13 STTRIGWIGIGLMGSPMASRLLA-AG-YFLTVFARNPSKALHLQSQ----GAFL-ATSPQHLAQSFAREKDCWAVDA--- 82 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~-~g-~~V~v~dr~~~~~~~l~~~----g~~~-~~s~~e~~~~~~~~~g~~~~~~--- 82 (257)
+..+|+|||+|.+|...+..+.. .+ .+|.+|||++++++.+.+. +... ..+.++++. ..++.+...
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~----~aDiVitaT~s~ 199 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPE----AVDLVVTATTSR 199 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhh----cCCEEEEccCCC
Confidence 34689999999999999999975 45 4799999999998888754 2222 356666653 333333222
Q ss_pred -cCCCCcccccCcceEEEeCCC
Q 036264 83 -PVSGGDIGARDGKLAIFAAGD 103 (257)
Q Consensus 83 -pv~~~~~~~~~g~~~~~~~g~ 103 (257)
|++.. ....|+.+..+|.+
T Consensus 200 ~Pl~~~--~~~~g~hi~~iGs~ 219 (304)
T PRK07340 200 TPVYPE--AARAGRLVVAVGAF 219 (304)
T ss_pred CceeCc--cCCCCCEEEecCCC
Confidence 44433 23566767777754
No 172
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.76 E-value=0.004 Score=56.13 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=44.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLA 68 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~ 68 (257)
..+|+|+|+|.+|..+|..+...|.+|+++++++.+.......|..+. +.++++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal 248 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAA 248 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHH
Confidence 468999999999999999999999999999999988766666676543 445543
No 173
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.76 E-value=0.003 Score=57.29 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=39.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~~ 56 (257)
..||.|||+|.||..++.+|...|. +++++||++++++.+.+.
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~ 224 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSA 224 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence 4689999999999999999999995 799999999999998875
No 174
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.033 Score=45.92 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=88.8
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCeEE-EEeCChhhHhHHhhc-C--------------CcccCCHHHHHHH----
Q 036264 11 SPSTTRIGWIGIGLMGSPMASRLLAAGYFLT-VFARNPSKALHLQSQ-G--------------AFLATSPQHLAQS---- 70 (257)
Q Consensus 11 ~~~~~~IgvIG~G~mG~~la~~L~~~g~~V~-v~dr~~~~~~~l~~~-g--------------~~~~~s~~e~~~~---- 70 (257)
.+..+.++|||.|..|.+...+-.+.++... +..|++++++.|.+. + ..+.+.+..+...
T Consensus 7 ~~~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~~~s~vaa~ 86 (289)
T COG5495 7 RPARVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDALYSGVAAT 86 (289)
T ss_pred cceeeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHHHHHHHHHh
Confidence 3456889999999999995444444444332 347899998887764 1 1122222222222
Q ss_pred -------------------HH---HhcCccEEec-c---CCCCccccc--CcceEEEeCCCHHHHHHHHHHHHHhCC-ce
Q 036264 71 -------------------FA---REKDCWAVDA-P---VSGGDIGAR--DGKLAIFAAGDSAVVQWLTPLFEVLGK-PT 121 (257)
Q Consensus 71 -------------------~~---~~~g~~~~~~-p---v~~~~~~~~--~g~~~~~~~g~~~~~~~~~~ll~~~g~-~~ 121 (257)
.+ ...|..-.+- | ++|.+.... .++...+..+|+--...++.+...+|. .|
T Consensus 87 ~~~rpg~iv~HcSga~~~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~emgg~~f 166 (289)
T COG5495 87 SLNRPGTIVAHCSGANGSGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALEMGGEPF 166 (289)
T ss_pred cccCCCeEEEEccCCCchhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHHhCCCce
Confidence 11 1111111111 2 122222222 234334435565556667788888888 66
Q ss_pred EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 036264 122 FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVR 162 (257)
Q Consensus 122 ~~g~~g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~ 162 (257)
.+-+ +.-...+...|......+..+.|+.++-+..|+|.-
T Consensus 167 ~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~ 206 (289)
T COG5495 167 CVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAGDDQP 206 (289)
T ss_pred eech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCc
Confidence 6554 556666777777777778899999999999999843
No 175
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.76 E-value=0.013 Score=51.25 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=59.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHC-CCeEE-EEeCCh-hhHhHHhhcCCcccCCHHHHHHH------------------HH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAA-GYFLT-VFARNP-SKALHLQSQGAFLATSPQHLAQS------------------FA 72 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~-g~~V~-v~dr~~-~~~~~l~~~g~~~~~s~~e~~~~------------------~~ 72 (257)
++||+|||+|+||..++..+.+. +.+++ +|+|++ ++... ..++....+..++..+ .+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~--~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~~~ 80 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT--ETPVYAVADDEKHLDDVDVLILCMGSATDIPEQAPY 80 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh--cCCccccCCHHHhccCCCEEEEcCCCccCHHHHHHH
Confidence 47999999999999999999876 67766 479985 43321 1233333344443322 34
Q ss_pred HhcCccEEec-cCCCCc--------cccc-CcceEEEeCC-CHHHHHHHHHHHHHh
Q 036264 73 REKDCWAVDA-PVSGGD--------IGAR-DGKLAIFAAG-DSAVVQWLTPLFEVL 117 (257)
Q Consensus 73 ~~~g~~~~~~-pv~~~~--------~~~~-~g~~~~~~~g-~~~~~~~~~~ll~~~ 117 (257)
...|+.+++. |..... ..+. .+...++..| |+..+...+-+.+.+
T Consensus 81 L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~ 136 (324)
T TIGR01921 81 FAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAV 136 (324)
T ss_pred HHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhcc
Confidence 4567777766 322211 1122 2455555545 666655555566655
No 176
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.75 E-value=0.004 Score=54.79 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=44.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH-CC-CeEEEEeCChhhHhHHhhc-----CCc--ccCCHHHHHH
Q 036264 13 STTRIGWIGIGLMGSPMASRLLA-AG-YFLTVFARNPSKALHLQSQ-----GAF--LATSPQHLAQ 69 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~-~g-~~V~v~dr~~~~~~~l~~~-----g~~--~~~s~~e~~~ 69 (257)
+.++|+|||+|.+|.+.+..+.. .+ .+|.+|+|++++++.+.+. ++. ..+++++++.
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~ 196 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVA 196 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHc
Confidence 34689999999999999998875 44 5899999999999988753 333 3566666653
No 177
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.73 E-value=0.0024 Score=52.11 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=31.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARN 46 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~ 46 (257)
..||+|||+|.||+.+|..|++.|. +|+++|++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999998 79999998
No 178
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.72 E-value=0.0023 Score=48.00 Aligned_cols=56 Identities=30% Similarity=0.519 Sum_probs=37.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHH-CCCeEE-EEeCChh-hH----hHHh---hcCCcccCCHHHHHHH
Q 036264 15 TRIGWIGI-GLMGSPMASRLLA-AGYFLT-VFARNPS-KA----LHLQ---SQGAFLATSPQHLAQS 70 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~-~g~~V~-v~dr~~~-~~----~~l~---~~g~~~~~s~~e~~~~ 70 (257)
|||+|+|+ |+||+.++..+.+ .++++. +++|+++ .. ..+. ..++.+.++++++...
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~ 67 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE 67 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc
Confidence 58999999 9999999999998 677754 5588762 11 1111 2356666777666543
No 179
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.71 E-value=0.0033 Score=54.87 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=33.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC--eEEEEeCChhhHh
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGY--FLTVFARNPSKAL 51 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~--~V~v~dr~~~~~~ 51 (257)
+.+||+|||+|.+|+.+|..|+..|. ++.++|+++++++
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~ 42 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLK 42 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHH
Confidence 45799999999999999999998876 7999999876554
No 180
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.71 E-value=0.0055 Score=53.81 Aligned_cols=106 Identities=24% Similarity=0.288 Sum_probs=73.3
Q ss_pred CCeEEEEcCChhH-HHHHHHHHHCCC---eEEEEeCChhhHhHHhhc-CC-cccCCHHHHHHH-----------------
Q 036264 14 TTRIGWIGIGLMG-SPMASRLLAAGY---FLTVFARNPSKALHLQSQ-GA-FLATSPQHLAQS----------------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG-~~la~~L~~~g~---~V~v~dr~~~~~~~l~~~-g~-~~~~s~~e~~~~----------------- 70 (257)
++||||||+|.++ ...+..+.+.+. -|.++||++++++.+.+. ++ ...+|.++++++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e 82 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE 82 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHH
Confidence 5799999999555 568888888763 466779999999988875 65 367788988876
Q ss_pred ---HHHhcCcc-EEeccCCCCccccc-------CcceEEEeCCC---HHHHHHHHHHHHH--hCC
Q 036264 71 ---FAREKDCW-AVDAPVSGGDIGAR-------DGKLAIFAAGD---SAVVQWLTPLFEV--LGK 119 (257)
Q Consensus 71 ---~~~~~g~~-~~~~pv~~~~~~~~-------~g~~~~~~~g~---~~~~~~~~~ll~~--~g~ 119 (257)
...+.|.+ +++-|+..+...+. +....++++-. ...+.+++++++. +|.
T Consensus 83 ~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~g~lG~ 147 (342)
T COG0673 83 LALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELIDSGALGE 147 (342)
T ss_pred HHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhcCCcCc
Confidence 34456766 45669877643322 22335555542 3567788888874 554
No 181
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.70 E-value=0.0036 Score=53.95 Aligned_cols=42 Identities=33% Similarity=0.509 Sum_probs=38.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQS 55 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~ 55 (257)
..+|.|||+|.+|++++..|.+.|. +|+++||++++++.+.+
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~ 169 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALAD 169 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 3589999999999999999999997 79999999999988865
No 182
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.70 E-value=0.0032 Score=56.57 Aligned_cols=45 Identities=31% Similarity=0.413 Sum_probs=40.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC-CeEEEEeCChhhHhHHhhc-CC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG-YFLTVFARNPSKALHLQSQ-GA 58 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g-~~V~v~dr~~~~~~~l~~~-g~ 58 (257)
..++.|||+|.||.-.|++|.++| .+|++.||+.+++++|+++ |+
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~ 224 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA 224 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC
Confidence 468999999999999999999999 5899999999999999875 53
No 183
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.69 E-value=0.004 Score=53.57 Aligned_cols=43 Identities=30% Similarity=0.237 Sum_probs=39.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~~ 56 (257)
..++.|||+|-+|++++..|.+.|. +|+++||++++++.|.+.
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~ 168 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDL 168 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Confidence 3579999999999999999999997 799999999999988753
No 184
>PLN02494 adenosylhomocysteinase
Probab=96.69 E-value=0.0052 Score=56.13 Aligned_cols=54 Identities=22% Similarity=0.186 Sum_probs=43.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLA 68 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~ 68 (257)
..+|+|+|+|.+|..+|..+...|.+|+++++++.+.......|.... +.++++
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal 307 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVV 307 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHH
Confidence 468999999999999999999999999999999887665555676543 455554
No 185
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=96.68 E-value=0.0031 Score=56.60 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=39.1
Q ss_pred CeEEEEcCChhHHHH-HHHHHHCCCeEEEEeCChhhHhHHhhcCC
Q 036264 15 TRIGWIGIGLMGSPM-ASRLLAAGYFLTVFARNPSKALHLQSQGA 58 (257)
Q Consensus 15 ~~IgvIG~G~mG~~l-a~~L~~~g~~V~v~dr~~~~~~~l~~~g~ 58 (257)
|||.++|.|+||++. ...|.++|++|++.|++++.++.++++|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qgl 45 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKS 45 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCC
Confidence 689999999999854 77888899999999999999999988764
No 186
>PLN02602 lactate dehydrogenase
Probab=96.67 E-value=0.0043 Score=54.98 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=33.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC--eEEEEeCChhhHhH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGY--FLTVFARNPSKALH 52 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~--~V~v~dr~~~~~~~ 52 (257)
+||+|||+|++|+++|..|+..+. ++.++|+++++++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g 77 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRG 77 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhH
Confidence 699999999999999999998886 79999998876543
No 187
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.66 E-value=0.026 Score=52.43 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=39.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcc
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL 60 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~ 60 (257)
.+|.|+|+|..|.+.++.|.+.|++|+++|+++.+.+.+.+.|+..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~ 58 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVAT 58 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEE
Confidence 5899999999999999999999999999998877766666667654
No 188
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.66 E-value=0.028 Score=44.52 Aligned_cols=115 Identities=14% Similarity=0.145 Sum_probs=67.3
Q ss_pred CCeEEEEcCChh-HHHHHHHHHHCCCeEEEEeCChhhHhH-HhhcCCcc--cCCHHHHHHHHHHhcCccEEeccCCCCcc
Q 036264 14 TTRIGWIGIGLM-GSPMASRLLAAGYFLTVFARNPSKALH-LQSQGAFL--ATSPQHLAQSFAREKDCWAVDAPVSGGDI 89 (257)
Q Consensus 14 ~~~IgvIG~G~m-G~~la~~L~~~g~~V~v~dr~~~~~~~-l~~~g~~~--~~s~~e~~~~~~~~~g~~~~~~pv~~~~~ 89 (257)
..+|.|||.|.| |..++.+|.+.|.+|++.+|+.+...+ +.+..+.+ +.++. .+....-+.+..++|..+.....
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~~-ii~~~~~~~~~viIDla~prdvd 122 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPG-LVKGDMVKPGAVVIDVGINRVPD 122 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCCc-eecHHHccCCeEEEEccCCCccc
Confidence 468999999997 888999999999999999998654443 44444333 22233 44443234466778876554332
Q ss_pred cccCcceEEEeCC-CHHHHHHHHHHHHHhCC-ceEeCCcchHHHHHHHHHHH
Q 036264 90 GARDGKLAIFAAG-DSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIV 139 (257)
Q Consensus 90 ~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~-~~~~g~~g~a~~~kl~~n~~ 139 (257)
...+ =++|+ |.+..++. ... +-.-|.+|.-+...+..|++
T Consensus 123 -~~~~---~~~G~~d~~~~~~~------~~~~~~~pggvgp~t~a~l~~n~~ 164 (168)
T cd01080 123 -KSGG---KLVGDVDFESAKEK------ASAITPVPGGVGPMTVAMLMKNTV 164 (168)
T ss_pred -ccCC---CeeCCcCHHHHHhh------ccCcCCCCCcChHHHHHHHHHHHH
Confidence 2222 23344 54543333 111 11223456666666666665
No 189
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.65 E-value=0.029 Score=53.46 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=42.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL 60 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~ 60 (257)
.++|-|+|+|.+|..+++.|.+.|+++++.|.|+++++.+.+.|..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v 446 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKV 446 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeE
Confidence 46899999999999999999999999999999999999998877543
No 190
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.64 E-value=0.006 Score=53.60 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=43.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHH-CCC-eEEEEeCChhhHhHHhhc-----CCc--ccCCHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLA-AGY-FLTVFARNPSKALHLQSQ-----GAF--LATSPQHLA 68 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~-~g~-~V~v~dr~~~~~~~l~~~-----g~~--~~~s~~e~~ 68 (257)
..+++|||+|.+|...+..|.. .+. +|.+|+|++++++.+.+. +.. ..+++++++
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av 192 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAM 192 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHh
Confidence 4589999999999999999973 564 799999999999888653 433 345666655
No 191
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.64 E-value=0.0043 Score=43.31 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHC-CCeEEEEeC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAA-GYFLTVFAR 45 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~-g~~V~v~dr 45 (257)
..+++|+|.|.+|..++..|.+. +.+|.+|||
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46899999999999999999998 678999999
No 192
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.63 E-value=0.0053 Score=53.87 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=46.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHH-HCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccCCC
Q 036264 13 STTRIGWIGIGLMGSPMASRLL-AAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPVSG 86 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~-~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv~~ 86 (257)
..++|||||+|++|..+|+.+. .-|.+|.+|||.... +.....++.. .++++++ ...++..+..|.+.
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell----~~sDvv~lh~plt~ 212 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLL----QESDFVCIILPLTD 212 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHH----HhCCEEEEeCCCCh
Confidence 3579999999999999999987 567899999987422 1112234443 3677665 34556666667653
No 193
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.63 E-value=0.017 Score=52.90 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=65.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh----hHhHHhhcCCccc--CCHHHHHHH-----------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS----KALHLQSQGAFLA--TSPQHLAQS----------------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~----~~~~l~~~g~~~~--~s~~e~~~~----------------- 70 (257)
.++|.|+|.|.+|.++|+.|++.|++|+++|+++. ..+.+.+.|+... ....+....
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~~~ 84 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTNPM 84 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCCHH
Confidence 35899999999999999999999999999998643 2344555565442 222222210
Q ss_pred --HHHhcCccEEeccCCCCcccccCcceEEEeCCC---HHHHHHHHHHHHHhCC-ceEeCCcc
Q 036264 71 --FAREKDCWAVDAPVSGGDIGARDGKLAIFAAGD---SAVVQWLTPLFEVLGK-PTFMGEAG 127 (257)
Q Consensus 71 --~~~~~g~~~~~~pv~~~~~~~~~g~~~~~~~g~---~~~~~~~~~ll~~~g~-~~~~g~~g 127 (257)
.+.+.|+.++.-+-..... .... ++.+.|+ -.....+..+|+..+. ++..|..|
T Consensus 85 ~~~a~~~~i~v~~~~el~~~~--~~~~-~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gnig 144 (447)
T PRK02472 85 VEKALEKGIPIITEVELAYLI--SEAP-IIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIG 144 (447)
T ss_pred HHHHHHCCCcEEeHHHHHHHh--cCCC-EEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcccC
Confidence 2334444443322110000 0112 3444442 3556677788888777 66666654
No 194
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.62 E-value=0.0056 Score=49.51 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=37.8
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
.+++.|+|. |.+|..++..|++.|++|++++|++++.+.+.+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~ 70 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD 70 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 468999995 999999999999999999999999998877754
No 195
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.61 E-value=0.003 Score=55.33 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=33.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC-CeEEEEeCChhhHh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG-YFLTVFARNPSKAL 51 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g-~~V~v~dr~~~~~~ 51 (257)
.+||+|||+|.||..++..++..| .+|.++|+++++++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~ 43 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ 43 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch
Confidence 469999999999999999999988 58999999987643
No 196
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.57 E-value=0.027 Score=51.90 Aligned_cols=47 Identities=23% Similarity=0.419 Sum_probs=38.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh-----hHhHHhhcCCcc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS-----KALHLQSQGAFL 60 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~-----~~~~l~~~g~~~ 60 (257)
.+||+|+|+|..|.++|+.|.+.|++|+++|+++. ..+++.+.|+.+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~ 65 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKL 65 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEE
Confidence 35899999999999999999999999999997753 224466667654
No 197
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.57 E-value=0.0065 Score=52.78 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=45.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHC-C-CeEEEEeCChhhHhHHhhc-----C--CcccCCHHHHHHH
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAA-G-YFLTVFARNPSKALHLQSQ-----G--AFLATSPQHLAQS 70 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~-g-~~V~v~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~ 70 (257)
+..+++|||+|..|...+..+..- . .+|.+|+|++++++++.+. + +.+++++++++..
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~ 182 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD 182 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc
Confidence 446899999999999999888753 2 3899999999998887643 3 4456788887744
No 198
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.57 E-value=0.005 Score=56.94 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=38.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~ 56 (257)
.+++.|+|+|.+|.+++..|.+.|++|+++||++++.+.+.+.
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~ 374 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASR 374 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999988877653
No 199
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.52 E-value=0.0036 Score=54.31 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=31.2
Q ss_pred EEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHh
Q 036264 17 IGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKAL 51 (257)
Q Consensus 17 IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~ 51 (257)
|+|||+|.||..+|..|+..|+ +|+++|+++++.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~ 36 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQ 36 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHH
Confidence 6899999999999999998887 9999999977543
No 200
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.52 E-value=0.0052 Score=58.01 Aligned_cols=46 Identities=28% Similarity=0.402 Sum_probs=42.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcc
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL 60 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~ 60 (257)
.+|-|+|+|.+|+.+++.|.++|++|++.|+|+++.+++.+.|..+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~ 463 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRA 463 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeE
Confidence 4799999999999999999999999999999999999998876543
No 201
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.51 E-value=0.008 Score=54.36 Aligned_cols=48 Identities=23% Similarity=0.163 Sum_probs=42.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCccc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLA 61 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~ 61 (257)
..+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....|+...
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc
Confidence 358999999999999999999999999999999999888777787543
No 202
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.47 E-value=0.017 Score=52.60 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=33.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSK 49 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~ 49 (257)
.+||.|+|+|.-|.+.++.|.+.|++|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 579999999999999999999999999999966554
No 203
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.45 E-value=0.0066 Score=52.93 Aligned_cols=45 Identities=31% Similarity=0.436 Sum_probs=38.2
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCc
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAF 59 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~ 59 (257)
|||.|+| +|.+|+.++..|.++||+|++.+|++++...+...++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~ 46 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAE 46 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCE
Confidence 5899999 69999999999999999999999998776655554553
No 204
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.43 E-value=0.0079 Score=51.27 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=34.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHC-CCeEE-EEeCC--hhhHhHHhhcCCcccCCHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAA-GYFLT-VFARN--PSKALHLQSQGAFLATSPQHL 67 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~-g~~V~-v~dr~--~~~~~~l~~~g~~~~~s~~e~ 67 (257)
+|||+|||+|+||..+++.+.+. +.++. ++++. .++.......+....++++++
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l 58 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDAL 58 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHh
Confidence 36999999999999999999876 44543 34443 233222222255556666654
No 205
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.43 E-value=0.12 Score=47.79 Aligned_cols=105 Identities=8% Similarity=0.095 Sum_probs=77.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hc--CCCHHHHHHHHhhcC-CChHHHHhhhhhhccCC------CCCC
Q 036264 127 GCGQSCKIANQIVVGANLLGLSEGLVFAD----KA--GLDVRKWMDAIKGGA-AGSMAMELYGERMIKKD------FRPG 193 (257)
Q Consensus 127 g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~----~~--G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~------~~~~ 193 (257)
+.++.+|.+.|.+.+..+..++|.+.+.+ ++ ++|..++.+++..+. ..|++++.......... +.|.
T Consensus 316 ~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~ 395 (470)
T PTZ00142 316 DKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPD 395 (470)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHH
Confidence 57899999999999999999999999965 34 899999999999886 57787776443332211 1121
Q ss_pred cc--cchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHHHHH
Q 036264 194 GF--AEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFSAMV 235 (257)
Q Consensus 194 ~~--~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~~a~ 235 (257)
|. +.......+.++..+-+. |+|+|.+.++...|+.-.
T Consensus 396 ~~~~i~~~~~~~R~vV~~a~~~----gip~P~~s~aL~y~~s~~ 435 (470)
T PTZ00142 396 FNDELKNKQPSWRKVVSMATKN----GIPTPAFSASLAYYQMYR 435 (470)
T ss_pred HHHHHHHhhHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhh
Confidence 21 222334557788899999 999999999998555443
No 206
>PRK06046 alanine dehydrogenase; Validated
Probab=96.40 E-value=0.01 Score=52.11 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=56.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHC-CC-eEEEEeCChhhHhHHhhc-----CC--cccCCHHHHHHHHHHhcCccEEecc
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAA-GY-FLTVFARNPSKALHLQSQ-----GA--FLATSPQHLAQSFAREKDCWAVDAP 83 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~-g~-~V~v~dr~~~~~~~l~~~-----g~--~~~~s~~e~~~~~~~~~g~~~~~~p 83 (257)
...+|+|||+|.+|...+..|... +. .|.+|||++++.+++.+. +. ...++.+++++ ..+.++..|
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-----aDiVv~aTp 202 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-----CDILVTTTP 202 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-----CCEEEEecC
Confidence 346899999999999999999753 33 789999999998887753 32 34566666542 444455555
Q ss_pred CCCCcc---cccCcceEEEeCCC
Q 036264 84 VSGGDI---GARDGKLAIFAAGD 103 (257)
Q Consensus 84 v~~~~~---~~~~g~~~~~~~g~ 103 (257)
...... ....|+.+..+|.+
T Consensus 203 s~~P~~~~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 203 SRKPVVKAEWIKEGTHINAIGAD 225 (326)
T ss_pred CCCcEecHHHcCCCCEEEecCCC
Confidence 432211 12356666667754
No 207
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.40 E-value=0.0089 Score=52.24 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=56.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHC--CCeEEEEeCChhhHhHHhhc----CC--cccCCHHHHHHHHHHhcCccEEec--
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAA--GYFLTVFARNPSKALHLQSQ----GA--FLATSPQHLAQSFAREKDCWAVDA-- 82 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~--g~~V~v~dr~~~~~~~l~~~----g~--~~~~s~~e~~~~~~~~~g~~~~~~-- 82 (257)
+..+++|||+|..+...+..+..- -.+|.+|||++++++.+.+. +. .+++++++++.. .++.+...
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~----ADIV~taT~s 202 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHA----ANLIVTTTPS 202 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcC----CCEEEEecCC
Confidence 346899999999999999888753 23899999999999887642 33 336777776633 22222211
Q ss_pred --cCCCCcccccCcceEEEeCCCH
Q 036264 83 --PVSGGDIGARDGKLAIFAAGDS 104 (257)
Q Consensus 83 --pv~~~~~~~~~g~~~~~~~g~~ 104 (257)
|++... -...|+.+..+|.+.
T Consensus 203 ~~P~~~~~-~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 203 REPLLQAE-DIQPGTHITAVGADS 225 (315)
T ss_pred CCceeCHH-HcCCCcEEEecCCCC
Confidence 444322 223566677777643
No 208
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.39 E-value=0.0047 Score=55.80 Aligned_cols=33 Identities=39% Similarity=0.615 Sum_probs=31.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
.+|.|||.|.+|.+.|..|++.|++|++++|++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999875
No 209
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.37 E-value=0.0071 Score=54.32 Aligned_cols=39 Identities=41% Similarity=0.526 Sum_probs=33.8
Q ss_pred EEEEcCChhHHHHHHHHHHCC-C-eEEEEeCChhhHhHHhh
Q 036264 17 IGWIGIGLMGSPMASRLLAAG-Y-FLTVFARNPSKALHLQS 55 (257)
Q Consensus 17 IgvIG~G~mG~~la~~L~~~g-~-~V~v~dr~~~~~~~l~~ 55 (257)
|.|||.|.+|+.++..|++.+ + +|++.||+.++++++.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~ 41 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAE 41 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHh
Confidence 789999999999999999987 4 89999999999988875
No 210
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.37 E-value=0.0086 Score=51.24 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=45.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhh-HhHHhhcCCcccCCHHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSK-ALHLQSQGAFLATSPQHLAQS 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~-~~~l~~~g~~~~~s~~e~~~~ 70 (257)
..||+|||+|.-|.+-|.||..+|.+|++--|.... .+...+.|..+ .+.+|+++.
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ 74 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKR 74 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhc
Confidence 358999999999999999999999999888776554 55555667765 467777766
No 211
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.35 E-value=0.02 Score=49.25 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=39.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHC-CCeEE-EEeCChhhH--hHHhhcCCcc-cCCHHHHHHH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAA-GYFLT-VFARNPSKA--LHLQSQGAFL-ATSPQHLAQS 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~-g~~V~-v~dr~~~~~--~~l~~~g~~~-~~s~~e~~~~ 70 (257)
+||||||+|++|..++..+.+. +.++. ++|+++++. +...+.|+.. .++.++++.+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~ 62 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLAN 62 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcC
Confidence 6899999999999998888754 45654 578888753 3333457654 4467777654
No 212
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.29 E-value=0.033 Score=48.17 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=39.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHC-CCeEE-EEeCChhhH--hHHhhcCCcc-cCCHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAA-GYFLT-VFARNPSKA--LHLQSQGAFL-ATSPQHLAQ 69 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~-g~~V~-v~dr~~~~~--~~l~~~g~~~-~~s~~e~~~ 69 (257)
++||||||+|++|+.+...+.+. +.++. ++|+++++. +...+.|+.. .++.++++.
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~ 64 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLA 64 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHh
Confidence 57999999999999988888764 44654 578887642 3334457765 466777774
No 213
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.26 E-value=0.0088 Score=53.52 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=38.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~ 56 (257)
.+|.|||+|.+|...+..+.+.|.+|+++||++++.+.+...
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~ 209 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAE 209 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHh
Confidence 579999999999999999999999999999999998887654
No 214
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.24 E-value=0.01 Score=40.62 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=43.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEe
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVD 81 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~ 81 (257)
||.|||.|..|.-+|..|.+.|.+|++++|++.-.. ....+..+.+.+.+.+.|+.+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-------~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-------GFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-------TSSHHHHHHHHHHHHHTTEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-------hcCHHHHHHHHHHHHHCCCEEEe
Confidence 689999999999999999999999999999865321 11122344445567777776653
No 215
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.22 E-value=0.013 Score=52.52 Aligned_cols=58 Identities=16% Similarity=0.302 Sum_probs=45.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHC--C-CeEEEEeCChhhHhHHhhc------C---CcccCCHHHHHHH
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAA--G-YFLTVFARNPSKALHLQSQ------G---AFLATSPQHLAQS 70 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~--g-~~V~v~dr~~~~~~~l~~~------g---~~~~~s~~e~~~~ 70 (257)
+..+++|||+|.++...+..++.- . .+|.+|+|++++++.+.+. + +.+++|+++++.+
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ 223 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG 223 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC
Confidence 446899999999999999988762 2 3899999999998887642 2 4457788887743
No 216
>PRK07060 short chain dehydrogenase; Provisional
Probab=96.21 E-value=0.016 Score=48.02 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=37.7
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~ 56 (257)
.+++.|.|. |.+|..++..|++.|++|++.+|++++.+.+.+.
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~ 52 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGE 52 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 368999997 8999999999999999999999999887776543
No 217
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=96.21 E-value=0.0046 Score=56.04 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=42.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCC------hhhHhHHhhcCCcccCCHHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARN------PSKALHLQSQGAFLATSPQHLAQS 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~------~~~~~~l~~~g~~~~~s~~e~~~~ 70 (257)
.++|+|||+|..|.+.|.+|...|++|++--|. ....+.+.+.|..+ .+++|++..
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ 97 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQ 97 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHh
Confidence 479999999999999999999999999854433 33445555557655 567777666
No 218
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.21 E-value=0.015 Score=51.47 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=43.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHC--CCeEEEEeCChhhHhHHhhc----C--CcccCCHHHHHHH
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAA--GYFLTVFARNPSKALHLQSQ----G--AFLATSPQHLAQS 70 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~--g~~V~v~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~ 70 (257)
+..+++|||+|..+...+..+..- -.+|.+|+|++++.+.+.+. + +.+++++++++.+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ 193 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEG 193 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc
Confidence 346899999999999888777542 24899999999998887643 3 3456778777643
No 219
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.19 E-value=0.013 Score=50.32 Aligned_cols=43 Identities=28% Similarity=0.286 Sum_probs=39.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~~ 56 (257)
..++.|+|.|-++.+++..|++.|. +|+++||+.+++++|.+.
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~ 169 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL 169 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 3679999999999999999999995 899999999999998764
No 220
>PRK07236 hypothetical protein; Provisional
Probab=96.17 E-value=0.0086 Score=53.69 Aligned_cols=35 Identities=37% Similarity=0.371 Sum_probs=32.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
.++|.|||.|..|.++|..|.+.|++|++++|.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999998753
No 221
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.17 E-value=0.012 Score=46.76 Aligned_cols=36 Identities=39% Similarity=0.555 Sum_probs=33.8
Q ss_pred EEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhH
Q 036264 17 IGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALH 52 (257)
Q Consensus 17 IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~ 52 (257)
|.|+|. |.+|..++..|.+.|++|++..|++++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 689995 999999999999999999999999998887
No 222
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.15 E-value=0.0083 Score=46.96 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=31.2
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCC
Q 036264 12 PSTTRIGWIGIGLMGSPMASRLLAAGYFLTVFARN 46 (257)
Q Consensus 12 ~~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~ 46 (257)
-+..+|.|||.|.+|...++.|.+.|++|++++++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 34679999999999999999999999999999643
No 223
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.15 E-value=0.0088 Score=45.42 Aligned_cols=110 Identities=20% Similarity=0.155 Sum_probs=61.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhhcCC----cccCCHHHHHHHHHHhc--Ccc--EEeccCC
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQSQGA----FLATSPQHLAQSFAREK--DCW--AVDAPVS 85 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~~g~----~~~~s~~e~~~~~~~~~--g~~--~~~~pv~ 85 (257)
.||.|+|+|.+|+.++.+|++.|. +++++|.+.=....+..+-. .+-..-.+++++.+.+. ... .+..++.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~ 82 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKID 82 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccc
Confidence 589999999999999999999998 79999987544444443211 11223345555544433 222 2223331
Q ss_pred CC--cccccCcceEEEeCCCHHHHHHHHHHHHHhCC-ceEeC
Q 036264 86 GG--DIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMG 124 (257)
Q Consensus 86 ~~--~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-~~~~g 124 (257)
.. ......-.+++.+..+.+....+.......+. .++.+
T Consensus 83 ~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 83 EENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp HHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 10 01111223344455566666666677766666 44443
No 224
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.15 E-value=0.0084 Score=47.78 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=29.8
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEeCCh
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGY-FLTVFARNP 47 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~ 47 (257)
||.|||+|.+|+.++.+|++.|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999999999999998 699999875
No 225
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.14 E-value=0.016 Score=50.85 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=57.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH-CC-CeEEEEeCChhhHhHHhhc-----CC--cccCCHHHHHHHHHHhcCccEEecc
Q 036264 13 STTRIGWIGIGLMGSPMASRLLA-AG-YFLTVFARNPSKALHLQSQ-----GA--FLATSPQHLAQSFAREKDCWAVDAP 83 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~-~g-~~V~v~dr~~~~~~~l~~~-----g~--~~~~s~~e~~~~~~~~~g~~~~~~p 83 (257)
...+++|||+|.+|...+..++. .+ .+|.+|||++++.+++.+. ++ ...++.++++. ..++.+...|
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~aDiVi~aT~ 201 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIE----EADIIVTVTN 201 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHh----cCCEEEEccC
Confidence 34689999999999999888764 34 3899999999999888752 33 34566666653 3344444444
Q ss_pred CCCCc--ccccCcceEEEeCCCH
Q 036264 84 VSGGD--IGARDGKLAIFAAGDS 104 (257)
Q Consensus 84 v~~~~--~~~~~g~~~~~~~g~~ 104 (257)
..... .....|..+..+|.+.
T Consensus 202 s~~p~i~~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 202 AKTPVFSEKLKKGVHINAVGSFM 224 (325)
T ss_pred CCCcchHHhcCCCcEEEecCCCC
Confidence 32211 2334576666777643
No 226
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.13 E-value=0.0076 Score=54.46 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=31.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
|+|.|||.|.+|.+.|..|+++|++|+++++++.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 5899999999999999999999999999999754
No 227
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.12 E-value=0.0084 Score=52.33 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=46.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccCCC
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPVSG 86 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv~~ 86 (257)
..++|||||+|++|+.+|+.+..-|.+|++|||+.... +.+.. ..++++++ +..++..+..|.+.
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell----~~sDvv~lh~Plt~ 208 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELL----KTSDIISIHAPLNE 208 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHh----hcCCEEEEeCCCCc
Confidence 35789999999999999999988888999999964321 12332 23566654 34566666777654
No 228
>PRK07045 putative monooxygenase; Reviewed
Probab=96.12 E-value=0.0077 Score=53.98 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=33.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 11 SPSTTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 11 ~~~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
++++.+|.|||.|..|...|..|.++|++|+++++.++
T Consensus 2 ~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 2 KNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred CCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 33457899999999999999999999999999998764
No 229
>PRK06753 hypothetical protein; Provisional
Probab=96.09 E-value=0.0078 Score=53.53 Aligned_cols=34 Identities=35% Similarity=0.480 Sum_probs=32.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
|+|.|||.|..|.++|..|.++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998865
No 230
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.08 E-value=0.011 Score=51.54 Aligned_cols=86 Identities=19% Similarity=0.240 Sum_probs=49.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH-CC-CeEEEEeCChhhHhHHhhc----C--CcccCCHHHHHHHHHHhcCccEEec--
Q 036264 13 STTRIGWIGIGLMGSPMASRLLA-AG-YFLTVFARNPSKALHLQSQ----G--AFLATSPQHLAQSFAREKDCWAVDA-- 82 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~-~g-~~V~v~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~~~~~~g~~~~~~-- 82 (257)
+..+++|||+|..+...+..+.. .+ .+|.+|+|+++++++|.+. + +..++|+++++.+ ..+.+...
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~----aDii~taT~s 202 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRG----ADIIVTATPS 202 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTT----SSEEEE----
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhccc----CCEEEEccCC
Confidence 34589999999999999988865 23 3899999999999888653 3 3457788887644 22222211
Q ss_pred ----cCCCCcccccCcceEEEeCCC
Q 036264 83 ----PVSGGDIGARDGKLAIFAAGD 103 (257)
Q Consensus 83 ----pv~~~~~~~~~g~~~~~~~g~ 103 (257)
|+.... ....|+.+..+|.+
T Consensus 203 ~~~~P~~~~~-~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 203 TTPAPVFDAE-WLKPGTHINAIGSY 226 (313)
T ss_dssp SSEEESB-GG-GS-TT-EEEE-S-S
T ss_pred CCCCccccHH-HcCCCcEEEEecCC
Confidence 433322 23456666677754
No 231
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.05 E-value=0.0097 Score=53.26 Aligned_cols=38 Identities=32% Similarity=0.356 Sum_probs=33.1
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 10 ISPSTTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 10 ~~~~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
|++...+|.|||.|..|.++|..|.++|++|+++++++
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 33344579999999999999999999999999999874
No 232
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.04 E-value=0.0093 Score=53.49 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=32.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
.++|.|||.|..|.++|..|.+.|++|++++|++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 36899999999999999999999999999998764
No 233
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.04 E-value=0.0098 Score=50.97 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=44.0
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeC-ChhhHhHHhhcCCcc--cCCHHHHHHHHHHhcCccEEeccCC
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFAR-NPSKALHLQSQGAFL--ATSPQHLAQSFAREKDCWAVDAPVS 85 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr-~~~~~~~l~~~g~~~--~~s~~e~~~~~~~~~g~~~~~~pv~ 85 (257)
..+|+|||. |.||.+||..|.++|++|++|+. +++..+...+..+.+ ...+ +.+....-+.|..++|.-+.
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~~-~~v~~~~ik~GavVIDvgin 232 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGRG-HFVTKEFVKEGAVVIDVGMN 232 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEecCcc-ccCCHHHccCCcEEEEecce
Confidence 468999999 99999999999999999999943 322222222222221 1111 12222334556677776543
No 234
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.03 E-value=0.011 Score=39.28 Aligned_cols=30 Identities=43% Similarity=0.613 Sum_probs=27.1
Q ss_pred EEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 19 WIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 19 vIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
|||.|.-|.+.|..|.++|++|+++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998754
No 235
>PRK11579 putative oxidoreductase; Provisional
Probab=96.03 E-value=0.03 Score=49.55 Aligned_cols=104 Identities=23% Similarity=0.238 Sum_probs=66.4
Q ss_pred CCeEEEEcCChhHHH-HHHHHHHC-CCeEE-EEeCChhhHhHHhhc-CCcccCCHHHHHHH-------------------
Q 036264 14 TTRIGWIGIGLMGSP-MASRLLAA-GYFLT-VFARNPSKALHLQSQ-GAFLATSPQHLAQS------------------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~-la~~L~~~-g~~V~-v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~------------------- 70 (257)
++||||||+|.+|.. .+..+.+. +.+|+ ++|+++++... +. +....+|.++++++
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~--~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~ 81 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA--DWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLA 81 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh--hCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 479999999999984 56666554 56665 68999876542 22 45567888888865
Q ss_pred -HHHhcCccEE-eccCCCCcccc-------cCcceEEEeCC---CHHHHHHHHHHHHH--hCC
Q 036264 71 -FAREKDCWAV-DAPVSGGDIGA-------RDGKLAIFAAG---DSAVVQWLTPLFEV--LGK 119 (257)
Q Consensus 71 -~~~~~g~~~~-~~pv~~~~~~~-------~~g~~~~~~~g---~~~~~~~~~~ll~~--~g~ 119 (257)
.+.+.|.+++ +-|+..+...+ ......++++- -...+..++++++. +|.
T Consensus 82 ~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~g~iG~ 144 (346)
T PRK11579 82 KAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAEGVLGE 144 (346)
T ss_pred HHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhcCCCCC
Confidence 4445677654 66987654211 11222444443 24567788888874 565
No 236
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.01 E-value=0.015 Score=53.17 Aligned_cols=43 Identities=28% Similarity=0.457 Sum_probs=40.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~ 56 (257)
+++|-|+|+|.+|..+++.|.+.|++|++.|+++++.+.+.+.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE 273 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999888764
No 237
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.00 E-value=0.06 Score=49.32 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=65.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhh--HhHHhh--cCCcccC-C-HHHHHHH-----------------
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSK--ALHLQS--QGAFLAT-S-PQHLAQS----------------- 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~--~~~l~~--~g~~~~~-s-~~e~~~~----------------- 70 (257)
.++|.|+|.|..|.+.|+.|.+.|++|+++|.++.. .+++.+ .|+.... . ..+....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p~~ 84 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDI 84 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCHHH
Confidence 458999999999999999999999999999976542 344543 2544321 1 1111111
Q ss_pred -HHHhcCccEEeccCC-CCcccccCcceEEEeCCC---HHHHHHHHHHHHHhCC-ceEeCCcch
Q 036264 71 -FAREKDCWAVDAPVS-GGDIGARDGKLAIFAAGD---SAVVQWLTPLFEVLGK-PTFMGEAGC 128 (257)
Q Consensus 71 -~~~~~g~~~~~~pv~-~~~~~~~~g~~~~~~~g~---~~~~~~~~~ll~~~g~-~~~~g~~g~ 128 (257)
.+.++++.++.-+-. .......... ++.+.|+ -.....+..+|+..+. .+..|..|.
T Consensus 85 ~~a~~~~i~v~~~~~~~~~~~~~~~~~-~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~GniG~ 147 (445)
T PRK04308 85 EAFKQNGGRVLGDIELLADIVNRRGDK-VIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT 147 (445)
T ss_pred HHHHHcCCcEEEhHHHHHHhhhcCCCC-EEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCccH
Confidence 333455555533311 1000000112 3444442 3555677788888777 666666664
No 238
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.97 E-value=0.025 Score=47.37 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=35.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.++|-|.|. |.+|..++..|++.|++|++.+|++++.+.+.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAA 51 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 467899985 99999999999999999999999987665543
No 239
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.96 E-value=0.019 Score=52.57 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=32.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
.++|.|+|.|.+|.++|..|++.|++|+++|+++
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999975
No 240
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.95 E-value=0.017 Score=48.52 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=36.7
Q ss_pred CCCeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 13 STTRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 13 ~~~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.+++|.|+| .|.+|+.++..|+++||+|++..|++++...+.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~ 58 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL 58 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc
Confidence 457999999 599999999999999999999999988765543
No 241
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.94 E-value=0.01 Score=51.88 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=43.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccCCC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPVSG 86 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv~~ 86 (257)
.++|||||+|++|+.+|+.+..-|.+|++|||.... . ... ..++++++ +...+..+..|.+.
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~-~~~l~ell----~~sDiv~l~lPlt~ 209 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A-----RPD-RLPLDELL----PQVDALTLHCPLTE 209 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c-----ccc-ccCHHHHH----HhCCEEEECCCCCh
Confidence 468999999999999999998889999999986321 1 111 23555554 44556666667653
No 242
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.93 E-value=0.011 Score=51.56 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=32.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC--eEEEEeCChhhHh
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGY--FLTVFARNPSKAL 51 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~--~V~v~dr~~~~~~ 51 (257)
||+|||+|.+|+.+|..|+..+. ++.++|+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~ 38 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAE 38 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhh
Confidence 79999999999999999998886 7999999876554
No 243
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.90 E-value=0.011 Score=51.67 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=30.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSK 49 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~ 49 (257)
.+|.|||.|.-|.++|..|+++|++|++++|++..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 37999999999999999999999999999987653
No 244
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.90 E-value=0.12 Score=42.19 Aligned_cols=42 Identities=26% Similarity=0.177 Sum_probs=34.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh-hHhHHhh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS-KALHLQS 55 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~-~~~~l~~ 55 (257)
..+|.|||.|.+|..-++.|.+.|.+|++++.+.. ..+.+.+
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~ 51 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAE 51 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHH
Confidence 46899999999999999999999999999987643 3344443
No 245
>PRK05868 hypothetical protein; Validated
Probab=95.88 E-value=0.011 Score=52.87 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=32.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
|++|.|||.|..|.++|..|.++|++|++++++++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 35899999999999999999999999999998765
No 246
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.87 E-value=0.021 Score=49.10 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=38.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~~ 56 (257)
..++.|+|+|-.+++++..|.+.|. +|+++||++++++.+.+.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~ 170 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 3579999999999999999999996 799999999999988753
No 247
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.86 E-value=0.021 Score=52.75 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=38.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHH-hhcCCcc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHL-QSQGAFL 60 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l-~~~g~~~ 60 (257)
.+||.|+|+|..|.+++..|.+.|++|+++|+++....++ .+.|+..
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~ 62 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVAD 62 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEE
Confidence 4589999999999999999999999999999987665543 3335544
No 248
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.78 E-value=0.022 Score=46.50 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
+..+|-|||.|.+|...+..|.+.|++|++++++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 35799999999999999999999999999998764
No 249
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.77 E-value=0.02 Score=54.75 Aligned_cols=47 Identities=26% Similarity=0.399 Sum_probs=42.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL 60 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~ 60 (257)
..+|-|+|+|.+|..+++.|.++|+++++.|.|+++++.+.+.|..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v 446 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKV 446 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeE
Confidence 46899999999999999999999999999999999999998776543
No 250
>PLN02306 hydroxypyruvate reductase
Probab=95.76 E-value=0.014 Score=52.45 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=31.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHH-HCCCeEEEEeCChh
Q 036264 13 STTRIGWIGIGLMGSPMASRLL-AAGYFLTVFARNPS 48 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~-~~g~~V~v~dr~~~ 48 (257)
..++|||||+|.+|+.+|+.+. .-|.+|++||+++.
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~ 200 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQS 200 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCc
Confidence 3578999999999999999986 55889999998754
No 251
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.75 E-value=0.017 Score=47.60 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=33.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~ 54 (257)
..+|.|||+|.+|+.++.+|++.|. +++++|.+.-....+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~ 69 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLN 69 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEecccccc
Confidence 4589999999999999999999998 6999998743333333
No 252
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=95.74 E-value=0.022 Score=44.13 Aligned_cols=101 Identities=16% Similarity=0.131 Sum_probs=65.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhhc-------CCChHHHHhhhhhhccCCCC-------
Q 036264 127 GCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVR-KWMDAIKGG-------AAGSMAMELYGERMIKKDFR------- 191 (257)
Q Consensus 127 g~a~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~-~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~------- 191 (257)
|....+++..|...+++..++.|+..+++.+|-+++ ++++...-+ +-.|+.. .++..+..++.+
T Consensus 21 Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~-~~G~~l~~g~~~~~~~~~~ 99 (149)
T PF07479_consen 21 GIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNR-RFGKALGKGGKSIEEAEKE 99 (149)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHH-HHHHHHHHTTS-HHHHHHH
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcH-HHHHHHHccCCCHHHHHHh
Confidence 444556678999999999999999999999999988 665532222 1112211 112223333111
Q ss_pred -CCcccchHHhhHHHHHHHHhhcccccCCCCchHHHHHHHHH
Q 036264 192 -PGGFAEYMVKDMGMGVDVVEESEDERVVVLPGAALGKQLFS 232 (257)
Q Consensus 192 -~~~~~~~~~kd~~~~~~~a~~~~~~~g~~~pi~~~~~~~~~ 232 (257)
....+.....-.+.+.+++++. ++++|++.++++++.
T Consensus 100 ~~~~~~vEG~~t~~~v~~l~~~~----~i~~Pl~~~vy~Il~ 137 (149)
T PF07479_consen 100 MLGGQTVEGVRTAKIVYELAEKY----NIEFPLFTAVYKILY 137 (149)
T ss_dssp HTTTS--HHHHHHHHHHHHHHHC----T-GSHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHHHHHHh----CCCChHHHHHHHHHc
Confidence 0122334666777889999999 999999999999885
No 253
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.73 E-value=0.015 Score=50.46 Aligned_cols=38 Identities=34% Similarity=0.346 Sum_probs=33.6
Q ss_pred EEEEcCChhHHHHHHHHHHCC--CeEEEEeCChhhHhHHh
Q 036264 17 IGWIGIGLMGSPMASRLLAAG--YFLTVFARNPSKALHLQ 54 (257)
Q Consensus 17 IgvIG~G~mG~~la~~L~~~g--~~V~v~dr~~~~~~~l~ 54 (257)
|+|||+|.+|+++|..|+..| ++++++|+++++++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~ 40 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDA 40 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHH
Confidence 689999999999999999988 58999999988766554
No 254
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.72 E-value=0.026 Score=56.22 Aligned_cols=70 Identities=23% Similarity=0.250 Sum_probs=49.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHH---HHHhcCccEEecc
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQS---FAREKDCWAVDAP 83 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~---~~~~~g~~~~~~p 83 (257)
...+|+|||.|.-|.+-|.-|.+.||.|++|.|+ ++.--|...|+.--..-.-++.+ .+...|+.|+...
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~-dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~ 1856 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERS-DRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNT 1856 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEec-CCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeec
Confidence 4579999999999999999999999999999987 45444444455432222224444 4556677776543
No 255
>PRK06847 hypothetical protein; Provisional
Probab=95.70 E-value=0.016 Score=51.53 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=32.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
+.+|.|||.|..|.++|..|.+.|++|++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 45899999999999999999999999999998753
No 256
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.69 E-value=0.033 Score=46.00 Aligned_cols=41 Identities=24% Similarity=0.235 Sum_probs=35.2
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.++|-|.|. |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~ 46 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALA 46 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHH
Confidence 357999985 99999999999999999999999988755443
No 257
>PRK07538 hypothetical protein; Provisional
Probab=95.66 E-value=0.014 Score=52.79 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=31.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
|+|.|||.|..|.++|..|.++|++|++++++++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 5899999999999999999999999999998764
No 258
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.64 E-value=0.015 Score=50.78 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=43.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccCCC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPVSG 86 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv~~ 86 (257)
.++|||||+|.+|+.+|+.+..-|.+|++|+|.... .. ... ..++++++ ...++..+..|.+.
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~~-~~~l~ell----~~sDiv~l~~Plt~ 209 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---REG-YTPFEEVL----KQADIVTLHCPLTE 209 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---ccc-cCCHHHHH----HhCCEEEEcCCCCh
Confidence 479999999999999999998889999999986421 11 111 23555554 44556666667653
No 259
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.63 E-value=0.078 Score=43.11 Aligned_cols=111 Identities=18% Similarity=0.136 Sum_probs=60.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhhcCCc----ccCCHHHHHHHHHHhcC----ccEEeccC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQSQGAF----LATSPQHLAQSFAREKD----CWAVDAPV 84 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~~g~~----~~~s~~e~~~~~~~~~g----~~~~~~pv 84 (257)
..||.|||+|.+|+.++++|+..|. +++++|.+.-....+..+-.. +-.+-.+++.+.+.+.. +......+
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~ 100 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI 100 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCc
Confidence 3689999999999999999999997 699998774333333322111 11122344444444332 22233333
Q ss_pred CCCccc-ccCcceEEEeCCCHHHHHHHHHHHHHhCC-ceEeC
Q 036264 85 SGGDIG-ARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMG 124 (257)
Q Consensus 85 ~~~~~~-~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-~~~~g 124 (257)
...... ...-.+++....+.+....+.+.....+. .++.+
T Consensus 101 ~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 101 SEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATG 142 (197)
T ss_pred cccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 211111 11223334334466666666777666665 44433
No 260
>PRK07588 hypothetical protein; Provisional
Probab=95.61 E-value=0.015 Score=52.07 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=31.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
++|.|||.|..|.++|..|++.|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 5799999999999999999999999999987754
No 261
>PRK08017 oxidoreductase; Provisional
Probab=95.60 E-value=0.035 Score=46.40 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=38.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCC
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGA 58 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~ 58 (257)
++|-|.|. |.+|.++++.|++.|++|++.+|++++.+.+.+.++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~ 47 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLGF 47 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHhCCC
Confidence 36999998 999999999999999999999999988877766554
No 262
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.59 E-value=0.021 Score=51.54 Aligned_cols=35 Identities=23% Similarity=0.474 Sum_probs=32.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
..+|.|||.|..|.++|..|.+.|++|+++++.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 46899999999999999999999999999998754
No 263
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.59 E-value=0.061 Score=54.05 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=42.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC-Ce-------------EEEEeCChhhHhHHhhc--C---Ccc-cCCHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG-YF-------------LTVFARNPSKALHLQSQ--G---AFL-ATSPQHLAQ 69 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g-~~-------------V~v~dr~~~~~~~l~~~--g---~~~-~~s~~e~~~ 69 (257)
+.||+|||+|.||...+..|++.. .+ |++.|+++++++++.+. + +.. ..+.+++.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~ 644 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLK 644 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHH
Confidence 458999999999999999998753 23 89999999999888763 3 233 456666554
No 264
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.55 E-value=0.028 Score=51.25 Aligned_cols=56 Identities=27% Similarity=0.432 Sum_probs=38.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHC--------C--Ce-EEEEeCChhhHhHHhhcCCcccCCHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAA--------G--YF-LTVFARNPSKALHLQSQGAFLATSPQHLAQ 69 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~--------g--~~-V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~ 69 (257)
++|||+||+|.+|+.++..|.++ | .+ +.+++|++++.+.+...+..+.++.++++.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~ 69 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVN 69 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhh
Confidence 46899999999999999888553 3 23 446799887755432224455667777664
No 265
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.55 E-value=0.018 Score=51.64 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=32.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
+..+|.|||.|..|.++|..|+++|++|+++++.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 45689999999999999999999999999999864
No 266
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.51 E-value=0.023 Score=46.35 Aligned_cols=41 Identities=29% Similarity=0.392 Sum_probs=34.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~ 54 (257)
..||.|||+|.+|+.++.+|++.|. +++++|++.-....+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~ 62 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQ 62 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchh
Confidence 4689999999999999999999997 8999998754444443
No 267
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.49 E-value=0.018 Score=52.16 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=31.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~ 48 (257)
|||.|||.|.-|.++|..|.++|+ +|++++|+++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 589999999999999999999985 9999998765
No 268
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.48 E-value=0.019 Score=48.88 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=32.6
Q ss_pred EEEEcC-ChhHHHHHHHHHHCC----CeEEEEeCChhhHhHH
Q 036264 17 IGWIGI-GLMGSPMASRLLAAG----YFLTVFARNPSKALHL 53 (257)
Q Consensus 17 IgvIG~-G~mG~~la~~L~~~g----~~V~v~dr~~~~~~~l 53 (257)
|+|||+ |.||..++..|+..| .+|.++|+++++++..
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~ 42 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGV 42 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHH
Confidence 689999 999999999999999 6999999998765543
No 269
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.48 E-value=0.21 Score=42.56 Aligned_cols=32 Identities=34% Similarity=0.551 Sum_probs=26.0
Q ss_pred CeEEEEc-CChhHHHHHHHHHHC-CCeEE-EEeCC
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAA-GYFLT-VFARN 46 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~-g~~V~-v~dr~ 46 (257)
+||+|+| +|.||..+++.+.+. ++++. ++||.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 6999999 699999999999864 67655 46854
No 270
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.47 E-value=0.031 Score=51.41 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=36.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGA 58 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~ 58 (257)
.+||.|||+|..|.+.|..|.+.|++|+++|+.+.....+.+.|+
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~ 53 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGI 53 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCc
Confidence 358999999999999999999999999999987654444444443
No 271
>PRK06126 hypothetical protein; Provisional
Probab=95.46 E-value=0.022 Score=53.50 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 11 SPSTTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 11 ~~~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
+....+|.|||.|..|..+|..|.+.|++|++++|.+.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 33456899999999999999999999999999998754
No 272
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.43 E-value=0.027 Score=51.87 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=31.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
.++|+|||+|.-|.+.|..|.+.|++|+++++++
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4689999999999999999999999999988764
No 273
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.43 E-value=0.046 Score=45.41 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=35.7
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.++|.|+|. |.+|..++..|++.|++|++.+|++++.+.+.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 358999985 89999999999999999999999988766654
No 274
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.047 Score=45.02 Aligned_cols=40 Identities=25% Similarity=0.261 Sum_probs=35.2
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
++|.|+| .|.+|..++..|++.|++|++.+|++++.+++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 5789997 499999999999999999999999988776654
No 275
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.41 E-value=0.038 Score=45.55 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=36.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
||+-|.|. |.+|.+++..|++.|++|++.+|++++.+.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 47888976 899999999999999999999999888776654
No 276
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.40 E-value=0.024 Score=50.06 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=31.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCCh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~ 47 (257)
..+|.|||+|.+|+.+|..|++.|+ +++++|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4689999999999999999999998 899999874
No 277
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.40 E-value=0.036 Score=47.45 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=38.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhhc
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~~ 56 (257)
.++.|+|.|-.+.+++..|.+.|. +|+++||++++.+.+.+.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~ 165 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAEL 165 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 479999999999999999999997 699999999999988753
No 278
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.39 E-value=0.039 Score=47.67 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=35.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCe-EEEEeCCh---hhHhHHhh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYF-LTVFARNP---SKALHLQS 55 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~-V~v~dr~~---~~~~~l~~ 55 (257)
..++.|+|.|-.|.+++..|++.|.+ |++++|++ ++.+++.+
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~ 171 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAE 171 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHH
Confidence 35799999999999999999999985 99999997 66666543
No 279
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=95.38 E-value=0.024 Score=50.86 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=31.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
+.+|.|||.|..|.++|..|+++|++|+++++.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 4589999999999999999999999999999864
No 280
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.38 E-value=0.019 Score=51.57 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=31.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARN 46 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~ 46 (257)
.++|.|||.|..|.++|..|.++|++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 357999999999999999999999999999997
No 281
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.36 E-value=0.049 Score=52.36 Aligned_cols=35 Identities=34% Similarity=0.512 Sum_probs=32.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
...||.|||.|..|...|..|.+.|++|++|++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 45799999999999999999999999999999876
No 282
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.29 E-value=0.024 Score=51.93 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=31.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
.++|+|||+|.-|.+.|++|.+.|++|+++.|+.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 36899999999999999999999999999888754
No 283
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.29 E-value=0.043 Score=50.76 Aligned_cols=47 Identities=30% Similarity=0.334 Sum_probs=36.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh-----hHhHHhhcCCcc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS-----KALHLQSQGAFL 60 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~-----~~~~l~~~g~~~ 60 (257)
..+|.|||.|..|..+|..|.+.|++|+++|+++. ..+.+.+.|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~ 67 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATV 67 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEE
Confidence 45899999999999999999999999999996542 223455555533
No 284
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.29 E-value=0.028 Score=49.00 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=29.8
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEeCC
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARN 46 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~ 46 (257)
.|.|||.|..|.++|..|++.|++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999988
No 285
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.28 E-value=0.03 Score=51.44 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=32.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
+..|.|||.|..|++.|..|+++|++|+++++.+.
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 46899999999999999999999999999998753
No 286
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=95.27 E-value=0.041 Score=48.16 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=45.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHHHHHHhcCccEEeccCC
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQSFAREKDCWAVDAPVS 85 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~~~~~~g~~~~~~pv~ 85 (257)
...+|||+|+|.+|+.+|++|..-|..+..++|++.+.+...+.+.. ..|.++. +....+..+.+|..
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~----~~~sD~ivv~~pLt 228 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEEL----LANSDVIVVNCPLT 228 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHH----HhhCCEEEEecCCC
Confidence 34789999999999999999999884455557777666665555554 2233333 33445555666654
No 287
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.27 E-value=0.062 Score=42.43 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=38.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGA 58 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~ 58 (257)
..||.|+|.|+.|..-+..+...|++|+++|.++++.+.+...+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~ 64 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGA 64 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTT
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccC
Confidence 368999999999999999999999999999999998888776644
No 288
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.26 E-value=0.071 Score=49.25 Aligned_cols=35 Identities=37% Similarity=0.543 Sum_probs=32.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
+..+|.|||.|..|...|..|.+.|++|++|++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 45689999999999999999999999999998875
No 289
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.25 E-value=0.036 Score=48.56 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=29.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHCC--CeEEEEeCC
Q 036264 13 STTRIGWIGI-GLMGSPMASRLLAAG--YFLTVFARN 46 (257)
Q Consensus 13 ~~~~IgvIG~-G~mG~~la~~L~~~g--~~V~v~dr~ 46 (257)
++.||+|||+ |++|+.++..|+..+ .++.++|++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 4569999999 999999999998666 489999994
No 290
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.25 E-value=0.048 Score=45.53 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=36.1
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
|+|-|+| .|.+|.+++..|++.|++|++.+|++++.+.+.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD 42 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5788998 5999999999999999999999999988777654
No 291
>PRK07102 short chain dehydrogenase; Provisional
Probab=95.19 E-value=0.051 Score=45.12 Aligned_cols=40 Identities=30% Similarity=0.279 Sum_probs=34.9
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
++|-|.| .|.+|.+++..|+++|++|++.+|++++.+.+.
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 42 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLA 42 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 4788888 699999999999999999999999988766543
No 292
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.19 E-value=0.072 Score=45.93 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=35.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
++|-|.|. |.+|.+++..|++.|++|++.+|++++.+++.+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 56888885 999999999999999999999999887766543
No 293
>PRK10206 putative oxidoreductase; Provisional
Probab=95.19 E-value=0.049 Score=48.24 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=63.9
Q ss_pred CeEEEEcCChhHH-HHHHHHHH--CCCeEE-EEeCChhhHhHHhh-cC-CcccCCHHHHHHH------------------
Q 036264 15 TRIGWIGIGLMGS-PMASRLLA--AGYFLT-VFARNPSKALHLQS-QG-AFLATSPQHLAQS------------------ 70 (257)
Q Consensus 15 ~~IgvIG~G~mG~-~la~~L~~--~g~~V~-v~dr~~~~~~~l~~-~g-~~~~~s~~e~~~~------------------ 70 (257)
.||||||+|.++. ..+..+.. .+.+|. ++|+++++. ++.+ .+ ....+|.++++++
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~ 80 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY 80 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence 5899999999775 34455533 256664 689998665 4433 33 5667789998865
Q ss_pred --HHHhcCcc-EEeccCCCCcccc--------cCcceEEEeCC---CHHHHHHHHHHHHH--hCC
Q 036264 71 --FAREKDCW-AVDAPVSGGDIGA--------RDGKLAIFAAG---DSAVVQWLTPLFEV--LGK 119 (257)
Q Consensus 71 --~~~~~g~~-~~~~pv~~~~~~~--------~~g~~~~~~~g---~~~~~~~~~~ll~~--~g~ 119 (257)
.+.+.|.+ +++-|+..+...+ ..+ ..++++- -...+..++++++. +|.
T Consensus 81 ~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~-~~l~v~~~~R~~p~~~~~k~li~~g~iG~ 144 (344)
T PRK10206 81 AKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKG-LTVTPYQNRRFDSCFLTAKKAIESGKLGE 144 (344)
T ss_pred HHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhC-CEEEEEEeeeECHHHHHHHHHHHcCCCCC
Confidence 34456665 5577987654322 223 2444443 23567788888875 565
No 294
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.18 E-value=0.062 Score=45.74 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=38.8
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCC
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGA 58 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~ 58 (257)
++|-|.|. |.+|.+++..|++.|++|++.+|++++.+.+.+.++
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~ 49 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGL 49 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCc
Confidence 46888887 999999999999999999999999998888876654
No 295
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.17 E-value=0.025 Score=53.08 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=28.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSK 49 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~ 49 (257)
+||+|||+|.-|.+.+++|.+.|++|++++++++-
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i 36 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI 36 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC
Confidence 58999999999999999999999999999987653
No 296
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.14 E-value=0.046 Score=51.27 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=38.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~ 56 (257)
..++-|+|.|-+|.+++..|++.|.+|+++||+.++.+.+.+.
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~ 421 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADA 421 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 3579999999999999999999999999999999998888653
No 297
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.10 E-value=0.16 Score=46.59 Aligned_cols=46 Identities=17% Similarity=0.113 Sum_probs=36.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh--hHhHHhh--cCCcc
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS--KALHLQS--QGAFL 60 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~--~~~~l~~--~g~~~ 60 (257)
-.|.|||+|..|.++|+.|.+.|++|+++|..+. ..+.|.+ .|+..
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~ 56 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVEL 56 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEE
Confidence 4799999999999999999999999999997643 2234554 25544
No 298
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.07 E-value=0.054 Score=49.89 Aligned_cols=45 Identities=33% Similarity=0.449 Sum_probs=35.8
Q ss_pred CCeEEEEcCChhHHH-HHHHHHHCCCeEEEEeCChh-hHhHHhhcCC
Q 036264 14 TTRIGWIGIGLMGSP-MASRLLAAGYFLTVFARNPS-KALHLQSQGA 58 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~-la~~L~~~g~~V~v~dr~~~-~~~~l~~~g~ 58 (257)
.++|.|||+|..|.+ +|+.|.+.|++|+++|.++. ..+.|.+.|+
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi 53 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGA 53 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCC
Confidence 358999999999999 89999999999999997643 3344554444
No 299
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.07 E-value=0.037 Score=46.01 Aligned_cols=41 Identities=34% Similarity=0.420 Sum_probs=33.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~ 54 (257)
..||.|||+|..|+.++.+|++.|. +++++|.+.-....+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~ 62 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQ 62 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccc
Confidence 4689999999999999999999997 8999987754434443
No 300
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.07 E-value=0.12 Score=43.45 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=35.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~~ 56 (257)
..||.|+|+|.+|+.++.+|++.|. +++++|.+.-....|..+
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ 67 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQ 67 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccc
Confidence 3689999999999999999999997 799999886555555443
No 301
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.06 E-value=0.086 Score=44.08 Aligned_cols=44 Identities=23% Similarity=0.100 Sum_probs=35.7
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 11 SPSTTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 11 ~~~~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
+.+.++|-|.|. |.+|.+++..|++.|++|++.+|+++..+++.
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 52 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAV 52 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 334567888865 88999999999999999999999987665543
No 302
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.06 E-value=0.05 Score=54.53 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=32.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
+..||+|||.|.-|.+-|..|++.||+|++|++.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 45799999999999999999999999999999864
No 303
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.06 E-value=0.098 Score=46.28 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=30.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHC-CCeEEE-EeCChhhHhHHh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAA-GYFLTV-FARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~-g~~V~v-~dr~~~~~~~l~ 54 (257)
++||||+|+|.||..+++.+.+. +.+|.. ++++++....+.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la 43 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVA 43 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHH
Confidence 36999999999999999998865 456655 466765555443
No 304
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=95.05 E-value=0.035 Score=49.42 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=32.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
+++|.|||.|.+|.+.|-.|++.|++|+++++.+.
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 46899999999999999999999999999997753
No 305
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.05 E-value=0.035 Score=49.09 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=34.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~ 54 (257)
..||.|||+|.+|+.++.+|+++|. +++++|.+.-....|.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~ 65 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQ 65 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcC
Confidence 4689999999999999999999998 8999998754333333
No 306
>PLN02427 UDP-apiose/xylose synthase
Probab=95.04 E-value=0.058 Score=48.33 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=35.1
Q ss_pred CCCeEEEEc-CChhHHHHHHHHHHC-CCeEEEEeCChhhHhHHh
Q 036264 13 STTRIGWIG-IGLMGSPMASRLLAA-GYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 13 ~~~~IgvIG-~G~mG~~la~~L~~~-g~~V~v~dr~~~~~~~l~ 54 (257)
..|||.|.| +|.+|+.++..|+++ |++|++.+|++++...+.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~ 56 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLL 56 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhh
Confidence 357999998 599999999999998 599999998876655543
No 307
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.03 E-value=0.074 Score=47.04 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=45.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC--CeEE-EEeCChhhHhHHhhc-CCcccCCHHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAG--YFLT-VFARNPSKALHLQSQ-GAFLATSPQHLAQS 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g--~~V~-v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~ 70 (257)
..||+|||+ .||...+..+.+.. .++. ++|+++++++++.+. |+...+|.+|++.+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d 62 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDD 62 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcC
Confidence 468999999 68999999998754 5644 579999999998875 77777888888743
No 308
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=95.03 E-value=0.028 Score=48.84 Aligned_cols=36 Identities=36% Similarity=0.464 Sum_probs=30.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC--eEEEEeCChhhH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGY--FLTVFARNPSKA 50 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~--~V~v~dr~~~~~ 50 (257)
+||+|||.|++|+++|-.|...+. ++.++|+++++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~ 38 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKA 38 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccc
Confidence 589999999999999999977764 899999985543
No 309
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.03 E-value=0.077 Score=43.93 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=34.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
+++-|.|. |.+|..++..|++.|++|++.+|++++.+.+.
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALA 47 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46888875 99999999999999999999999988766554
No 310
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=95.03 E-value=0.032 Score=48.70 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=30.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC--eEEEEeCCh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGY--FLTVFARNP 47 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~--~V~v~dr~~ 47 (257)
|||+|||+ |.+|..++..|+..|+ +|+++||++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 68999997 9999999999999987 599999954
No 311
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.01 E-value=0.069 Score=44.14 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=30.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCCh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~ 47 (257)
.++|+|.|+|++|+.+|..|.+.|. .|.+.|.+.
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 5799999999999999999999988 566678876
No 312
>PRK09072 short chain dehydrogenase; Provisional
Probab=95.01 E-value=0.076 Score=44.70 Aligned_cols=42 Identities=33% Similarity=0.396 Sum_probs=36.3
Q ss_pred CCeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 14 TTRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 14 ~~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
.++|-|.| .|.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAA 47 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 35788998 5999999999999999999999999887766643
No 313
>PRK08013 oxidoreductase; Provisional
Probab=95.00 E-value=0.033 Score=50.18 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=31.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
.+|.|||.|..|.++|..|++.|++|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4799999999999999999999999999998764
No 314
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.00 E-value=0.029 Score=49.94 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=30.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
.|.|||.|..|..+|..|+++|++|++++|++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 388999999999999999999999999998864
No 315
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.00 E-value=0.029 Score=50.56 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=31.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
.||.|||.|..|.++|..|.++|++|.++++.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998754
No 316
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.96 E-value=0.07 Score=51.41 Aligned_cols=35 Identities=37% Similarity=0.554 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
+.++|.|||.|..|.+.|..|.+.|++|+++++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999999999999999999999999864
No 317
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.96 E-value=0.041 Score=44.78 Aligned_cols=40 Identities=25% Similarity=0.421 Sum_probs=32.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHL 53 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l 53 (257)
..||.|||+|.+|+.++.+|++.|. +++++|.+.-....+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl 59 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDL 59 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcC
Confidence 4689999999999999999999997 699998774333333
No 318
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.95 E-value=0.038 Score=49.54 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=30.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
.+|.|||.|..|.++|..|.+.|++|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 479999999999999999999999999999764
No 319
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=94.93 E-value=0.089 Score=46.19 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=45.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHC--CCeEEEEeCChhhHhHHhhc----C---CcccCCHHHHHHH
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAA--GYFLTVFARNPSKALHLQSQ----G---AFLATSPQHLAQS 70 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~--g~~V~v~dr~~~~~~~l~~~----g---~~~~~s~~e~~~~ 70 (257)
....++|||+|..+...+..+..- --+|.+|+|+++..+++... + +..++|.+++++.
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~ 195 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG 195 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc
Confidence 346799999999999999988753 34899999999999888743 2 4677888877753
No 320
>PRK08328 hypothetical protein; Provisional
Probab=94.92 E-value=0.043 Score=45.77 Aligned_cols=43 Identities=28% Similarity=0.471 Sum_probs=35.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~~ 56 (257)
..||.|||+|..|+.++.+|++.|. +++++|.+.-....+..+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq 70 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQ 70 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccc
Confidence 3589999999999999999999997 799999876555555543
No 321
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.92 E-value=0.038 Score=49.41 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=30.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHC---CCeEEEEeCC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAA---GYFLTVFARN 46 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~---g~~V~v~dr~ 46 (257)
+.+|.|||.|..|.++|..|.+. |++|++++|.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 46899999999999999999998 9999999984
No 322
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.91 E-value=0.063 Score=49.91 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=42.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAF 59 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~ 59 (257)
..||.|||+|.+|...+..+...|.+|+++|+++++.+...+.|+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 4589999999999999999999999999999999999998888876
No 323
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=94.90 E-value=0.038 Score=49.71 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=31.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
.+|.|||.|..|.+.|..|.++|++|+++++.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5799999999999999999999999999998764
No 324
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.89 E-value=0.16 Score=42.73 Aligned_cols=41 Identities=29% Similarity=0.384 Sum_probs=33.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~ 54 (257)
..||.|||+|..|+.++.+|++.|. +++++|.+.-....+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~ 73 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQ 73 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhh
Confidence 4689999999999999999999997 7999988744444443
No 325
>PRK07814 short chain dehydrogenase; Provisional
Probab=94.89 E-value=0.096 Score=44.15 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=34.7
Q ss_pred CCeEEEEcCC-hhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGIG-LMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~G-~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.+++-|.|.+ .+|.+++..|++.|++|++.+|++++.+.+.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 51 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVA 51 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4678888754 7999999999999999999999988766554
No 326
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.88 E-value=0.075 Score=45.87 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=36.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCCh---hhHhHHhh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNP---SKALHLQS 55 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~---~~~~~l~~ 55 (257)
..++.|||+|-.+.+++..|++.|. +|+++||++ ++++.|.+
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~ 169 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQ 169 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHH
Confidence 3589999999999999999999886 899999994 57777765
No 327
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.88 E-value=0.035 Score=49.59 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=30.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCC
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARN 46 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~ 46 (257)
.+|.|||.|..|.++|..|++.|++|+++++.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 47999999999999999999999999999975
No 328
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.87 E-value=0.17 Score=44.08 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=34.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhhc
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~~ 56 (257)
||.|||+|..|..++++|+..|. +++++|.+.-....|..+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQ 42 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQ 42 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcC
Confidence 68999999999999999999997 799999876555555433
No 329
>PRK06185 hypothetical protein; Provisional
Probab=94.87 E-value=0.04 Score=49.64 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=31.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
...|.|||.|..|.++|..|++.|++|+++++++
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3579999999999999999999999999999875
No 330
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=94.86 E-value=0.088 Score=46.54 Aligned_cols=42 Identities=36% Similarity=0.540 Sum_probs=36.0
Q ss_pred CCCCeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHH
Q 036264 12 PSTTRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHL 53 (257)
Q Consensus 12 ~~~~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l 53 (257)
++.|+|-|.| +|.+|+.+++.|++.|++|++.+|++++.+.+
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~ 50 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHL 50 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence 4568999999 69999999999999999999998887665543
No 331
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.85 E-value=0.18 Score=42.18 Aligned_cols=40 Identities=18% Similarity=0.352 Sum_probs=33.2
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhh
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQS 55 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~ 55 (257)
||.|||+|..|+.++++|+..|. +++++|.+.-....|..
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnR 41 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNR 41 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhcc
Confidence 68999999999999999999998 79999987544444443
No 332
>PLN02985 squalene monooxygenase
Probab=94.84 E-value=0.047 Score=51.08 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=31.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
..+|.|||.|..|.++|..|+++|++|++++|++
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 4589999999999999999999999999999874
No 333
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.80 E-value=0.082 Score=43.98 Aligned_cols=32 Identities=31% Similarity=0.318 Sum_probs=29.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEE-EEeC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLT-VFAR 45 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~-v~dr 45 (257)
.++|+|.|+|++|..++..|.+.|..|+ +.|.
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4799999999999999999999999988 5566
No 334
>PRK15076 alpha-galactosidase; Provisional
Probab=94.79 E-value=0.038 Score=50.48 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=29.7
Q ss_pred CeEEEEcCChhHHHHHH--HHH----HCCCeEEEEeCChhhHhH
Q 036264 15 TRIGWIGIGLMGSPMAS--RLL----AAGYFLTVFARNPSKALH 52 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~--~L~----~~g~~V~v~dr~~~~~~~ 52 (257)
+||+|||.|.||.+.+. .++ -.+.+|+++|+++++.+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~ 45 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEE 45 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHH
Confidence 69999999999966554 554 235689999999988663
No 335
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=94.78 E-value=0.059 Score=47.49 Aligned_cols=41 Identities=15% Similarity=0.342 Sum_probs=34.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHC-CCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAA-GYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~-g~~V~v~dr~~~~~~~l~ 54 (257)
+|||.|.|. |.+|+.++..|+++ |++|++.+|++.+...+.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~ 43 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLV 43 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhc
Confidence 368999996 99999999999986 699999999876554443
No 336
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=94.77 E-value=0.05 Score=49.04 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=30.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHC-CC-eEEEEeCCh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAA-GY-FLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~-g~-~V~v~dr~~ 47 (257)
...|.|||.|.+|.++|..|++. |. +|+++++++
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 45799999999999999999985 85 899999863
No 337
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=94.76 E-value=0.044 Score=48.67 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=30.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
..|.|||.|.+|.++|..|++.|++|++++|..
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 369999999999999999999999999999874
No 338
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=94.75 E-value=0.092 Score=44.19 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=36.3
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~ 56 (257)
.+++-|.|. |.+|.+++..|++.|++|++.+|++++.+++.+.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~ 48 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA 48 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh
Confidence 356777775 7899999999999999999999998888777653
No 339
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.73 E-value=0.073 Score=44.03 Aligned_cols=44 Identities=36% Similarity=0.540 Sum_probs=37.4
Q ss_pred EEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChh--hHhHHhhcCCcc
Q 036264 17 IGWIGI-GLMGSPMASRLLAAGYFLTVFARNPS--KALHLQSQGAFL 60 (257)
Q Consensus 17 IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~--~~~~l~~~g~~~ 60 (257)
|.|+|. |..|+.++..|.+.+++|.+..|++. ..+.+.+.|+.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~v 47 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEV 47 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceE
Confidence 789995 99999999999999999999999864 467777777754
No 340
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.73 E-value=0.049 Score=47.49 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=29.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC--eEEEEeCC
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGY--FLTVFARN 46 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~--~V~v~dr~ 46 (257)
|||+|||+ |++|+++|..|+..+. ++.++|++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 69999999 9999999999998885 89999987
No 341
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=94.73 E-value=0.042 Score=49.38 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=30.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--CCeEEEEeCCh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAA--GYFLTVFARNP 47 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~--g~~V~v~dr~~ 47 (257)
..|.|||.|.+|.++|..|++. |++|+++++.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4799999999999999999998 99999999874
No 342
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=94.71 E-value=0.054 Score=52.04 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=31.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
..+|.|||.|..|.++|..|.+.|++|++|+|++
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4689999999999999999999999999999875
No 343
>PRK07825 short chain dehydrogenase; Provisional
Probab=94.70 E-value=0.1 Score=44.22 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=36.3
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
.++|-|.|. |.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAA 47 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 357888885 899999999999999999999999988776643
No 344
>PRK06182 short chain dehydrogenase; Validated
Probab=94.69 E-value=0.1 Score=44.18 Aligned_cols=45 Identities=31% Similarity=0.270 Sum_probs=38.4
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCC
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGA 58 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~ 58 (257)
.++|.|.|. |.+|.+++..|++.|++|++.+|++++.+.+.+.++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~ 48 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGV 48 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCC
Confidence 357888885 899999999999999999999999988877765544
No 345
>PLN02214 cinnamoyl-CoA reductase
Probab=94.66 E-value=0.074 Score=46.92 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=32.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhh
Q 036264 13 STTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSK 49 (257)
Q Consensus 13 ~~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~ 49 (257)
.+++|.|.|. |.+|+.++..|+++|++|++..|+.++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~ 46 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD 46 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence 3568999997 999999999999999999999987654
No 346
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=94.65 E-value=0.038 Score=49.24 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=30.2
Q ss_pred eEEEEcCChhHHHHHHHHHHCC-CeEEEEeCChh
Q 036264 16 RIGWIGIGLMGSPMASRLLAAG-YFLTVFARNPS 48 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g-~~V~v~dr~~~ 48 (257)
.|.|||.|..|.++|..|+++| ++|++++|.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 3889999999999999999999 99999998753
No 347
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.64 E-value=0.074 Score=48.86 Aligned_cols=35 Identities=34% Similarity=0.417 Sum_probs=32.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
..++|.|||.|..|...|..|++.|++|+++++++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 45799999999999999999999999999999764
No 348
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.63 E-value=0.11 Score=43.11 Aligned_cols=41 Identities=24% Similarity=0.137 Sum_probs=35.4
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
..++.|+|. |.+|..++..|++.|+.|++.+|++++.+.+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~ 46 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAV 46 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 357999997 99999999999999999999999987665543
No 349
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.62 E-value=0.091 Score=43.55 Aligned_cols=39 Identities=23% Similarity=0.102 Sum_probs=33.8
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHH
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHL 53 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l 53 (257)
++|.|.| .|.+|.+++..|+++|++|++.+|++++...+
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 5799998 79999999999999999999999997655443
No 350
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.61 E-value=0.061 Score=45.20 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=34.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCC-----------CeEEEEeCChhhHhHHhhc
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAG-----------YFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g-----------~~V~v~dr~~~~~~~l~~~ 56 (257)
...||.|||+|..|+.++.+|++.| .+++++|.+.=....+..+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ 64 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ 64 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc
Confidence 3569999999999999999999874 2889999875444455444
No 351
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.59 E-value=0.075 Score=46.88 Aligned_cols=44 Identities=30% Similarity=0.394 Sum_probs=37.2
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHC-C-CeEEEEeCChhhHhHHhhc
Q 036264 13 STTRIGWIGI-GLMGSPMASRLLAA-G-YFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 13 ~~~~IgvIG~-G~mG~~la~~L~~~-g-~~V~v~dr~~~~~~~l~~~ 56 (257)
+.++|.|+|. |.||+.+++.|..+ | .+|++++|++++...+.+.
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~e 200 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAE 200 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHH
Confidence 3468999998 89999999999854 5 5899999999988887654
No 352
>PRK07774 short chain dehydrogenase; Provisional
Probab=94.59 E-value=0.11 Score=43.15 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=34.6
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHH
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHL 53 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l 53 (257)
.+++-|.|. |.+|..+++.|++.|++|++.+|+++..+.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 357889987 9999999999999999999999997765544
No 353
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.56 E-value=0.047 Score=48.59 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=29.4
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEeCC
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARN 46 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~ 46 (257)
.|.|||.|.+|.+.|..|+++|++|+++++.
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~ 32 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF 32 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5899999999999999999999999999985
No 354
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.56 E-value=0.06 Score=44.78 Aligned_cols=33 Identities=33% Similarity=0.380 Sum_probs=30.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC---eEEEEeCC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY---FLTVFARN 46 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~---~V~v~dr~ 46 (257)
.+||.|+|.|.+|.+++..|.+.|. +|+++||+
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4689999999999999999999996 59999998
No 355
>PRK08309 short chain dehydrogenase; Provisional
Probab=94.56 E-value=0.11 Score=41.53 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=34.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
|++.|+|...+|..++..|.+.|++|.+.+|++++.+.+.
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~ 40 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVK 40 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHH
Confidence 5788999777888899999999999999999987766654
No 356
>PRK08223 hypothetical protein; Validated
Probab=94.55 E-value=0.15 Score=43.77 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=35.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhhc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~~ 56 (257)
..+|.|||+|-.|+.++.+|+++|. +++++|.+.=....|..+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ 70 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQ 70 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccc
Confidence 4589999999999999999999997 789998875544445443
No 357
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=94.55 E-value=0.051 Score=48.82 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=31.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
.+|.|||.|..|..+|..|.+.|++|+++++.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 5799999999999999999999999999998863
No 358
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.54 E-value=0.045 Score=52.78 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=31.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
.+|.|||.|.+|.++|..|++.|++|++++++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 579999999999999999999999999999874
No 359
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=94.53 E-value=0.057 Score=49.27 Aligned_cols=35 Identities=31% Similarity=0.273 Sum_probs=32.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
+..|.|||.|..|.+.|..|+++|++|++++|.+.
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~ 39 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS 39 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 45799999999999999999999999999998754
No 360
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.51 E-value=0.072 Score=53.03 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=31.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCC
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARN 46 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~ 46 (257)
+..||.|||.|.-|...|..|++.||+|++||+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 4579999999999999999999999999999974
No 361
>PLN02650 dihydroflavonol-4-reductase
Probab=94.49 E-value=0.081 Score=46.70 Aligned_cols=42 Identities=26% Similarity=0.476 Sum_probs=35.0
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhH
Q 036264 11 SPSTTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALH 52 (257)
Q Consensus 11 ~~~~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~ 52 (257)
..+.++|-|.|. |.+|+.++..|+++|++|++.+|+++..+.
T Consensus 2 ~~~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~ 44 (351)
T PLN02650 2 GSQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKK 44 (351)
T ss_pred CCCCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHH
Confidence 345678999985 999999999999999999999888655443
No 362
>PRK06953 short chain dehydrogenase; Provisional
Probab=94.48 E-value=0.1 Score=42.67 Aligned_cols=43 Identities=23% Similarity=0.307 Sum_probs=36.9
Q ss_pred eEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCC
Q 036264 16 RIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGA 58 (257)
Q Consensus 16 ~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~ 58 (257)
++-|+| .|.+|..+++.|++.|++|++.+|+++..+++...++
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~~~~ 46 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQALGA 46 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHhccc
Confidence 577777 7999999999999999999999999988887765543
No 363
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=94.44 E-value=0.076 Score=49.07 Aligned_cols=35 Identities=31% Similarity=0.461 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
..++|.|||.|..|...|..|.+.|++|+++++.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 35689999999999999999999999999999864
No 364
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.43 E-value=0.12 Score=43.46 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=35.8
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
.+++-|.|. |.+|.+++..|++.|++|++.+|++++.+++.+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 357888875 999999999999999999999999887766654
No 365
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.43 E-value=0.045 Score=49.31 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=30.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
..|.|||.|..|.++|..|.+.|++|+++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 369999999999999999999999999999875
No 366
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.42 E-value=0.067 Score=44.65 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=33.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~ 54 (257)
..+|.|+|+|.+|+.++.+|++.|. +++++|.+.-....+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNln 52 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLN 52 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhc
Confidence 4589999999999999999999997 8999987744333343
No 367
>PRK08703 short chain dehydrogenase; Provisional
Probab=94.42 E-value=0.13 Score=42.49 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=34.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
++|-|.|. |.+|..++..|++.|++|++.+|++++.+.+.
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVY 47 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHH
Confidence 57888874 89999999999999999999999988766553
No 368
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.41 E-value=0.13 Score=42.36 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=35.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHH
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHL 53 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l 53 (257)
..+|.|.|. |.+|..+++.|++.|++|++.+|++++.+.+
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 357999986 7799999999999999999999998877665
No 369
>PRK08339 short chain dehydrogenase; Provisional
Probab=94.39 E-value=0.14 Score=43.21 Aligned_cols=40 Identities=18% Similarity=0.042 Sum_probs=33.3
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
+++-|.|. |.+|.+++..|++.|++|++.+|++++.+.+.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAR 49 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45666765 68999999999999999999999988766554
No 370
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.38 E-value=0.078 Score=48.74 Aligned_cols=38 Identities=34% Similarity=0.392 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 11 SPSTTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 11 ~~~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
+.+..+|+|||.|.-|.+-|.-|.++||+|++|++.+.
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 34457999999999999999999999999999987653
No 371
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=94.38 E-value=0.054 Score=48.89 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=31.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
++|.|||.|..|++.|..|+++|++|.+.++.+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4799999999999999999999999999998744
No 372
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=94.36 E-value=0.058 Score=47.83 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=29.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
.|.|||.|.+|.+.|..|++.|++|+++++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 58999999999999999999999999999864
No 373
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.36 E-value=0.11 Score=43.54 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=35.9
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
+++-|+| .|.+|.+++..|+++|++|++.+|++++.+++.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 3688887 6899999999999999999999999998877754
No 374
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.35 E-value=0.05 Score=47.12 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=33.4
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHH
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHL 53 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l 53 (257)
|+|.|.| .|.+|..++..|++.|++|++.+|+++....+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 40 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNL 40 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccccc
Confidence 4799998 59999999999999999999999987654433
No 375
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.35 E-value=0.071 Score=46.93 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=32.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~ 48 (257)
..+|-|||+|.||.-.+++|.++|. +|++.||+..
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 5689999999999999999999995 6999999974
No 376
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.34 E-value=0.12 Score=43.97 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=36.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~ 56 (257)
++|-|.|. |.+|.+++..|+++|++|++.+|++++.+.+.+.
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~ 47 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL 47 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh
Confidence 46888875 8999999999999999999999999888777653
No 377
>PRK07190 hypothetical protein; Provisional
Probab=94.33 E-value=0.066 Score=49.74 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 12 PSTTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 12 ~~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
+....|.|||.|..|..+|..|.+.|.+|.++++.+.
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 3446899999999999999999999999999998764
No 378
>PRK06101 short chain dehydrogenase; Provisional
Probab=94.32 E-value=0.12 Score=43.00 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=35.9
Q ss_pred eEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc
Q 036264 16 RIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 16 ~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~ 56 (257)
+|-|.| .|.+|..++..|++.|++|++.+|++++.+++.+.
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 566776 69999999999999999999999999888877654
No 379
>PRK08862 short chain dehydrogenase; Provisional
Probab=94.30 E-value=0.13 Score=42.59 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=34.8
Q ss_pred CCeEEEEcCCh-hHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGIGL-MGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~G~-mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.+++-|.|.+. +|.+++..|++.|++|++.+|++++.+++.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~ 46 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTY 46 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 35688888665 999999999999999999999998876654
No 380
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.30 E-value=0.14 Score=42.39 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=34.6
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEE-eCChhhHhHHh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVF-ARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~-dr~~~~~~~l~ 54 (257)
+++|-|+|. |.+|..++..|++.|++|++. +|++++.+.+.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~ 47 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELL 47 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 357999985 999999999999999999998 99987765543
No 381
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=94.30 E-value=0.092 Score=46.92 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=31.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 13 STTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 13 ~~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
..|||.|.|. |.+|+.++..|.+.||+|++.+|.+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 5689999997 9999999999999999999998754
No 382
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.29 E-value=0.11 Score=43.58 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=34.1
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
|+|-|.|. |.+|.+++..|+++|++|++.+|++++.+++.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 41 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKAL 41 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 57888875 78999999999999999999999987765543
No 383
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=94.27 E-value=0.1 Score=46.92 Aligned_cols=42 Identities=31% Similarity=0.446 Sum_probs=36.0
Q ss_pred CCCCCCCCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 7 TTPISPSTTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 7 ~~~~~~~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
-+++.+.+|+|+|||.|..|..++..+.+.|++|++++.+++
T Consensus 5 ~~~~~~~~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~ 46 (395)
T PRK09288 5 GTPLSPSATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYAN 46 (395)
T ss_pred cCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 345556678999999999999999999999999999988764
No 384
>PLN02463 lycopene beta cyclase
Probab=94.27 E-value=0.096 Score=48.12 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=31.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
...|.|||.|..|.++|..|++.|++|.++++++.
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 45899999999999999999999999999998753
No 385
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=94.26 E-value=0.063 Score=47.92 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=31.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
.+|.|||.|..|..+|..|++.|++|+++++++.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4799999999999999999999999999998755
No 386
>PRK12831 putative oxidoreductase; Provisional
Probab=94.26 E-value=0.091 Score=48.50 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
+.++|.|||.|..|...|..|++.|++|+++++.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 45799999999999999999999999999998753
No 387
>PRK09126 hypothetical protein; Provisional
Probab=94.26 E-value=0.063 Score=48.07 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=31.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
.+|.|||.|.-|.++|..|+++|++|++++|.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 4799999999999999999999999999998753
No 388
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.24 E-value=0.13 Score=42.90 Aligned_cols=40 Identities=18% Similarity=0.050 Sum_probs=35.3
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
++|-|.| .|.+|..++..|++.|++|++.+|++++.+.+.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAA 45 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 5789998 699999999999999999999999988766554
No 389
>PRK07109 short chain dehydrogenase; Provisional
Probab=94.22 E-value=0.16 Score=44.65 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=34.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
++|-|.|. |.+|.+++..|++.|++|++.+|++++.+.+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~ 49 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALA 49 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46888875 89999999999999999999999988776554
No 390
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=94.21 E-value=0.14 Score=42.77 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=35.6
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
++|-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAAL 48 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 4688887 4999999999999999999999999887776654
No 391
>PRK08177 short chain dehydrogenase; Provisional
Probab=94.20 E-value=0.1 Score=42.84 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=34.8
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
+++-|.| .|.+|.+++..|++.|++|++.+|++++.+.+.+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA 43 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh
Confidence 3577777 8999999999999999999999999877665543
No 392
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.19 E-value=0.072 Score=48.40 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=31.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSK 49 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~ 49 (257)
++|.|||.|..|...|..|++.|++|.++++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 58999999999999999999999999999865443
No 393
>PRK12939 short chain dehydrogenase; Provisional
Probab=94.18 E-value=0.14 Score=42.47 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=35.0
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.++|-|+|. |.+|..++..|++.|++|++.+|++++.+.+.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 357889985 99999999999999999999999988666543
No 394
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.17 E-value=0.14 Score=42.97 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=35.6
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
++|-|.| .|.+|..++..|++.|++|++.+|++++.+++.+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAA 44 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4677876 7899999999999999999999999888776654
No 395
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.14 E-value=0.14 Score=42.84 Aligned_cols=42 Identities=21% Similarity=0.105 Sum_probs=36.3
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
.++|-|+|. |.+|.+++..|++.|++|++.+|++.+.+.+.+
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAAD 49 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 357999988 999999999999999999999999877665543
No 396
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.13 E-value=0.12 Score=46.65 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=34.0
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhH
Q 036264 12 PSTTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKA 50 (257)
Q Consensus 12 ~~~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~ 50 (257)
+..++|.|+|. |.+|+.+++.|.++|++|++.+|++++.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~ 97 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGI 97 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhc
Confidence 34579999985 9999999999999999999999987643
No 397
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=94.13 E-value=0.084 Score=44.80 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=35.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
..|+|||.|.-|.+-|..|..+|++|+||+++...--++..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAt 42 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLAT 42 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchhe
Confidence 36999999999999999999999999999998776555543
No 398
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.13 E-value=0.15 Score=42.56 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=35.3
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.+++-|.|. |.+|.+++..|++.|++|++.+|++++.+.+.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLA 50 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 356888886 89999999999999999999999988776654
No 399
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=94.13 E-value=0.19 Score=43.93 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=39.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcccCCHHHHHH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFLATSPQHLAQ 69 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~ 69 (257)
+++||||+|.+|+-+|.++..-|..|+.||.-. ..+...+.|+... +.+|+..
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~-~~~~~~a~gvq~v-sl~Eil~ 199 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPIT-PMALAEAFGVQLV-SLEEILP 199 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCC-chHHHHhccceee-eHHHHHh
Confidence 579999999999999999999999999997542 1233444566654 5666553
No 400
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=94.11 E-value=0.07 Score=46.59 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=29.5
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCC--eEEEEeCCh
Q 036264 16 RIGWIGI-GLMGSPMASRLLAAGY--FLTVFARNP 47 (257)
Q Consensus 16 ~IgvIG~-G~mG~~la~~L~~~g~--~V~v~dr~~ 47 (257)
||+|||+ |++|+++|..|+..++ ++.++|+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 7999999 9999999999998886 899999986
No 401
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.10 E-value=0.074 Score=51.27 Aligned_cols=36 Identities=33% Similarity=0.423 Sum_probs=32.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
..++|.|||.|..|...|..|++.|++|+++++++.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 346899999999999999999999999999998753
No 402
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.09 E-value=0.15 Score=41.77 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=33.3
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhH
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALH 52 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~ 52 (257)
.++|-|.|. |.+|..+++.|++.|++|++.+|++++..+
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ 46 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence 357999975 999999999999999999999998766443
No 403
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=94.09 E-value=0.085 Score=49.75 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=30.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCC
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARN 46 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~ 46 (257)
...|.|||.|.+|.++|..|++.|++|++++++
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence 357999999999999999999999999999875
No 404
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=94.08 E-value=0.15 Score=43.36 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=36.8
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~ 56 (257)
+++-|-| .+-+|..+|+.|+++|++|++..|+.++.++++++
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~ 49 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKE 49 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHH
Confidence 4677777 48899999999999999999999999999888754
No 405
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=94.05 E-value=0.19 Score=42.30 Aligned_cols=41 Identities=15% Similarity=-0.079 Sum_probs=33.7
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.+++-|.|. |.+|.+++..|++.|++|++.+|++++.+++.
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~ 51 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGL 51 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 346777765 78999999999999999999999987765543
No 406
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.05 E-value=0.069 Score=49.08 Aligned_cols=32 Identities=34% Similarity=0.360 Sum_probs=30.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
||.|||.|..|.+.|+.|.+.|++|+++|+++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 69999999999999999999999999999764
No 407
>PRK06138 short chain dehydrogenase; Provisional
Probab=94.03 E-value=0.16 Score=42.15 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=34.6
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.++|-|.|. |.+|..++..|++.|++|++.+|+++..+...
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVA 46 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHH
Confidence 357888876 89999999999999999999999987665544
No 408
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.03 E-value=0.082 Score=49.20 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=30.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
.+|.|||+|..|.++|+.|.+.|++|+++|.++
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 579999999999999999999999999999754
No 409
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.02 E-value=0.094 Score=44.72 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=33.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~ 54 (257)
..+|.|||+|.+|+.+|.+|++.|. +++++|.+.-....+.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNln 71 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTN 71 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccc
Confidence 4689999999999999999999994 8999987754444443
No 410
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=94.01 E-value=0.066 Score=48.83 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=30.2
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
||.|||+|..|.++|+-|.+.|++|+++|.++.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence 589999999999999999999999999997543
No 411
>PLN00016 RNA-binding protein; Provisional
Probab=93.99 E-value=0.075 Score=47.56 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=32.4
Q ss_pred CCeEEEE----c-CChhHHHHHHHHHHCCCeEEEEeCChhh
Q 036264 14 TTRIGWI----G-IGLMGSPMASRLLAAGYFLTVFARNPSK 49 (257)
Q Consensus 14 ~~~IgvI----G-~G~mG~~la~~L~~~g~~V~v~dr~~~~ 49 (257)
++||.|+ | +|.+|+.++..|.++||+|++.+|++..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 4689999 5 6999999999999999999999998754
No 412
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.98 E-value=0.11 Score=46.02 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=31.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
.++|.|||.|..|...|..|.+.|++|+++++++.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 46899999999999999999999999999998643
No 413
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.96 E-value=0.16 Score=42.34 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=36.4
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
.++|-|.|. |.+|.+++..|++.|++|++.+|++++.+.+.+
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~ 51 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRA 51 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 367889985 999999999999999999999999988766543
No 414
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.96 E-value=0.17 Score=42.76 Aligned_cols=41 Identities=27% Similarity=0.277 Sum_probs=35.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.++|-|.|. |.+|..++..|+++|++|++.+|++++.+.+.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAA 48 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 358999986 89999999999999999999999987665443
No 415
>PRK05442 malate dehydrogenase; Provisional
Probab=93.96 E-value=0.084 Score=46.41 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=29.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEeCCh
Q 036264 13 STTRIGWIGI-GLMGSPMASRLLAAGY-------FLTVFARNP 47 (257)
Q Consensus 13 ~~~~IgvIG~-G~mG~~la~~L~~~g~-------~V~v~dr~~ 47 (257)
+.+||+|||+ |.+|+.+|..|...+. ++.++|+++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~ 45 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPP 45 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCC
Confidence 3469999998 9999999999987664 799999864
No 416
>PTZ00367 squalene epoxidase; Provisional
Probab=93.95 E-value=0.081 Score=50.05 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=31.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
..+|.|||.|..|.++|..|.++|++|++++|++
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4689999999999999999999999999999875
No 417
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.94 E-value=0.15 Score=44.15 Aligned_cols=51 Identities=25% Similarity=0.273 Sum_probs=44.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhhcCCcccCCHH
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQSQGAFLATSPQ 65 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~~g~~~~~s~~ 65 (257)
.+++|+|+|.+|.+.+..-..+|- ++++.|.|++|.+...+.|++-+-++.
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~ 245 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK 245 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh
Confidence 579999999999999999988886 799999999999998888876554444
No 418
>PRK07074 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.16 Score=42.39 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=35.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
.+|-|.|. |.+|..++..|++.|++|++.+|++++.+.+.+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD 44 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 36888886 899999999999999999999999888766654
No 419
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=93.91 E-value=0.075 Score=45.37 Aligned_cols=36 Identities=31% Similarity=0.207 Sum_probs=32.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHh
Q 036264 16 RIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKAL 51 (257)
Q Consensus 16 ~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~ 51 (257)
+|.|+|. |.+|+.++..|.+.|++|.+..|++++..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~ 37 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA 37 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc
Confidence 4788887 99999999999999999999999987643
No 420
>PRK06184 hypothetical protein; Provisional
Probab=93.90 E-value=0.08 Score=49.26 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=32.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
+.+|.|||.|..|..+|..|++.|++|+++++.++
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 35799999999999999999999999999998754
No 421
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=93.89 E-value=0.081 Score=47.71 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=30.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCC
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARN 46 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~ 46 (257)
.+|.|||.|..|.++|..|.+.|++|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 47999999999999999999999999999985
No 422
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.88 E-value=0.18 Score=42.16 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=34.9
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.++|-|.|. |.+|..++..|++.|++|++.+|++++.+++.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVA 48 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence 357888887 99999999999999999999999987665544
No 423
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=93.88 E-value=0.18 Score=51.04 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
+..||+|||.|.-|.+-|..|++.||+|++|++.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 35689999999999999999999999999998764
No 424
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.87 E-value=0.15 Score=47.95 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=35.2
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.+|.|.|. |.+|..+++.|++.|++|++++|+.++.+.+.
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 46888885 99999999999999999999999998876654
No 425
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.86 E-value=0.17 Score=42.25 Aligned_cols=41 Identities=20% Similarity=0.123 Sum_probs=35.0
Q ss_pred CCeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.++|-|.| .|.+|.+++..|++.|++|++.+|+++..+.+.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 46 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVA 46 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 35788887 489999999999999999999999987766554
No 426
>PRK08264 short chain dehydrogenase; Validated
Probab=93.86 E-value=0.15 Score=42.13 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=34.1
Q ss_pred CCeEEEEc-CChhHHHHHHHHHHCCC-eEEEEeCChhhHhH
Q 036264 14 TTRIGWIG-IGLMGSPMASRLLAAGY-FLTVFARNPSKALH 52 (257)
Q Consensus 14 ~~~IgvIG-~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~ 52 (257)
.++|-|+| .|.+|..++..|+++|+ +|++.+|++++.+.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~ 46 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD 46 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh
Confidence 35789998 59999999999999999 99999999876654
No 427
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=93.85 E-value=0.17 Score=42.39 Aligned_cols=33 Identities=18% Similarity=0.034 Sum_probs=28.9
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCC
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARN 46 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~ 46 (257)
.++|-|.|. |.+|.++++.|++.|++|++.+|+
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 456777765 789999999999999999999887
No 428
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=93.84 E-value=0.19 Score=42.28 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=36.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhc
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQ 56 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~ 56 (257)
+++-|.|. |.+|.+++..|+++|++|++.+|++++.+.+.+.
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 49 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQR 49 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 46777875 7899999999999999999999999888777643
No 429
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.83 E-value=0.072 Score=45.78 Aligned_cols=38 Identities=37% Similarity=0.388 Sum_probs=33.1
Q ss_pred eEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHH
Q 036264 16 RIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHL 53 (257)
Q Consensus 16 ~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l 53 (257)
+|-|.| .|.+|+.++..|.++||+|.+.+|.+......
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 40 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPL 40 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCcccccc
Confidence 489999 69999999999999999999999987665443
No 430
>PRK07478 short chain dehydrogenase; Provisional
Probab=93.81 E-value=0.18 Score=42.10 Aligned_cols=40 Identities=20% Similarity=0.088 Sum_probs=34.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
+++-|.|. |.+|.+++..|++.|++|++.+|++++.+.+.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 47 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLV 47 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46778875 78999999999999999999999988776654
No 431
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=93.81 E-value=0.11 Score=48.72 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=32.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
..+|.|||.|..|..+|..|.+.|++|++++|.++
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 46899999999999999999999999999998854
No 432
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.80 E-value=0.57 Score=41.55 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=61.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhh-cCCcccCCH-H-HHHHHHHH---hcCccEEeccCCCCc
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQS-QGAFLATSP-Q-HLAQSFAR---EKDCWAVDAPVSGGD 88 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~-~g~~~~~s~-~-e~~~~~~~---~~g~~~~~~pv~~~~ 88 (257)
++.|+|+|.+|...+..+...|. +|++.|++++|.+..++ .+.....+. + +....... ..|+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D---------- 240 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGAD---------- 240 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCC----------
Confidence 79999999999998777777775 78888999999998877 455433332 2 12222111 11121
Q ss_pred ccccCcceEEEeCCCHHHHHHHHHHHHHhCCceEeCCc
Q 036264 89 IGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFMGEA 126 (257)
Q Consensus 89 ~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~g~~ 126 (257)
.++-++|...+++.+.++.+.-|.+..+|-.
T Consensus 241 -------~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 241 -------VVIEAVGSPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred -------EEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence 2555566666677777777776666666654
No 433
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=93.79 E-value=0.19 Score=42.01 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=34.2
Q ss_pred CCeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.+++-|.| .|.+|.+++..|++.|++|++.+|++++.+++.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~ 50 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAV 50 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 34677776 588999999999999999999999987765543
No 434
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=93.78 E-value=0.085 Score=48.04 Aligned_cols=33 Identities=33% Similarity=0.441 Sum_probs=30.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
+|.|||.|..|...|..|++.|++|.++++.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999987655
No 435
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=93.78 E-value=0.12 Score=47.59 Aligned_cols=35 Identities=31% Similarity=0.510 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
..++|.|||.|..|...|..|.+.|++|+++++++
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~ 173 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 34689999999999999999999999999999864
No 436
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=93.78 E-value=0.18 Score=42.70 Aligned_cols=41 Identities=29% Similarity=0.343 Sum_probs=34.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
.+++-|.|. |.+|.+++..|++.|++|++.+|+++..+.+.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVV 51 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 356778875 89999999999999999999999987665554
No 437
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=93.78 E-value=0.098 Score=46.81 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=31.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
+++|+|||.|..|..|+....+.|++|+++|.+++
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~ 36 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPD 36 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence 35899999999999999999999999999998754
No 438
>PRK05854 short chain dehydrogenase; Provisional
Probab=93.75 E-value=0.27 Score=42.80 Aligned_cols=40 Identities=30% Similarity=0.226 Sum_probs=32.8
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
+++-|.| .+-+|.+++..|++.|++|++.+|++++.+++.
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~ 55 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAV 55 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4566665 677999999999999999999999988765543
No 439
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.72 E-value=0.097 Score=48.64 Aligned_cols=34 Identities=35% Similarity=0.407 Sum_probs=31.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
+++|.|||.|.=|.+-|..|+++|++|.|+.|+.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~ 36 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKND 36 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecC
Confidence 4689999999999999999999999999999764
No 440
>PRK05693 short chain dehydrogenase; Provisional
Probab=93.72 E-value=0.2 Score=42.46 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=37.0
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCC
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGA 58 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~ 58 (257)
+++-|.| .|.+|..++..|++.|++|++.+|++++.+.+.+.+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 46 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGF 46 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCC
Confidence 3577776 4899999999999999999999999888877766554
No 441
>PLN00106 malate dehydrogenase
Probab=93.71 E-value=0.12 Score=45.44 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=30.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCC--eEEEEeCCh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGY--FLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~--~V~v~dr~~ 47 (257)
..||+|||+ |++|+.++..|+..+. ++.++|+++
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 369999999 9999999999997775 899999976
No 442
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=93.71 E-value=0.18 Score=39.09 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=29.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHC-CCeEEE-EeC-ChhhHhHHhh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAA-GYFLTV-FAR-NPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~-g~~V~v-~dr-~~~~~~~l~~ 55 (257)
+||+|+|+|.||..+++.+.+. +.++.. .|+ +++....+.+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~ 44 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLK 44 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhc
Confidence 5899999999999999998854 556555 463 5555555543
No 443
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=93.68 E-value=0.092 Score=49.44 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=31.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
..+|.|||.|..|..+|..|.+.|++|+++++.++
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 35799999999999999999999999999998753
No 444
>PRK05717 oxidoreductase; Validated
Probab=93.68 E-value=0.26 Score=41.22 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=34.2
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
++|-|.| .|.+|..++..|+++|++|++.+|++++.+.+.
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~ 51 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVA 51 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 5688887 489999999999999999999999887666554
No 445
>PLN02206 UDP-glucuronate decarboxylase
Probab=93.65 E-value=0.13 Score=47.10 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=31.8
Q ss_pred CCCCCeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCC
Q 036264 11 SPSTTRIGWIG-IGLMGSPMASRLLAAGYFLTVFARN 46 (257)
Q Consensus 11 ~~~~~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~ 46 (257)
+...|||.|.| +|.+|+.++..|.++|++|++.++.
T Consensus 116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~ 152 (442)
T PLN02206 116 KRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNF 152 (442)
T ss_pred ccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCC
Confidence 44568999999 5999999999999999999998864
No 446
>PRK09186 flagellin modification protein A; Provisional
Probab=93.64 E-value=0.19 Score=41.91 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=33.9
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHH
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHL 53 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l 53 (257)
++|-|.|. |.+|.+++..|++.|++|++.+|++++.+.+
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~ 44 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNEL 44 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHH
Confidence 57888875 8999999999999999999999998876554
No 447
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.64 E-value=0.25 Score=42.52 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=36.0
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
..+|-|.|. |.+|..++..|++.|++|++.+|++++.+.+.+
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~ 51 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAA 51 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 356888875 889999999999999999999999988777654
No 448
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=93.63 E-value=0.11 Score=45.45 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=29.2
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCC
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARN 46 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~ 46 (257)
|||.|+| .|.+|..++..|+++|++|++++|.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~ 33 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNL 33 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecC
Confidence 5899999 6999999999999999999998764
No 449
>PRK07576 short chain dehydrogenase; Provisional
Probab=93.62 E-value=0.22 Score=42.06 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=33.9
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHH
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHL 53 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l 53 (257)
.+|-|.|. |.+|..++..|++.|++|++.+|+++..+.+
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~ 49 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAA 49 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 47888877 8999999999999999999999998766544
No 450
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=93.60 E-value=0.12 Score=47.37 Aligned_cols=43 Identities=28% Similarity=0.461 Sum_probs=34.0
Q ss_pred eEEEEcCChhHHH-HHHHHHHCCCeEEEEeCChh-hHhHHhhcCC
Q 036264 16 RIGWIGIGLMGSP-MASRLLAAGYFLTVFARNPS-KALHLQSQGA 58 (257)
Q Consensus 16 ~IgvIG~G~mG~~-la~~L~~~g~~V~v~dr~~~-~~~~l~~~g~ 58 (257)
+|-|||.|..|.+ +|+.|.+.|++|+++|.++. ..+.|.+.|+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi 45 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGI 45 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcC
Confidence 4889999999998 99999999999999997543 3344544444
No 451
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.59 E-value=0.18 Score=46.93 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=41.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcc
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL 60 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~ 60 (257)
.|+.|||+|.+|...+..+...|-.|+++|+++++.+.+.+.|...
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~ 210 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEF 210 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeE
Confidence 5899999999999999999999999999999999988887776643
No 452
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=0.096 Score=48.11 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=30.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
|||+|+|.|.-|.+-|.-|+++||+|++|.+.+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccC
Confidence 689999999999999999999999999997654
No 453
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=93.56 E-value=0.14 Score=37.95 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=25.8
Q ss_pred eEEEEc-CChhHHHHHHHHHHCCC-e-EEEEeCCh
Q 036264 16 RIGWIG-IGLMGSPMASRLLAAGY-F-LTVFARNP 47 (257)
Q Consensus 16 ~IgvIG-~G~mG~~la~~L~~~g~-~-V~v~dr~~ 47 (257)
||+||| +|++|..+.+.|.+.-+ + +.++.+++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 799999 99999999999998543 4 45566665
No 454
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=93.55 E-value=0.13 Score=44.63 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=31.9
Q ss_pred CCeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhh
Q 036264 14 TTRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSK 49 (257)
Q Consensus 14 ~~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~ 49 (257)
.++|.|.| +|.+|+.++..|+++||+|++.+|+++.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~ 40 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPND 40 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 36899999 6999999999999999999999887654
No 455
>PRK08244 hypothetical protein; Provisional
Probab=93.54 E-value=0.096 Score=48.61 Aligned_cols=34 Identities=32% Similarity=0.269 Sum_probs=31.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
..|.|||.|..|..+|..|.+.|++|+++++.++
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4799999999999999999999999999998754
No 456
>PRK06924 short chain dehydrogenase; Provisional
Probab=93.53 E-value=0.18 Score=41.93 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=33.0
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCCh-hhHhHHh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNP-SKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~-~~~~~l~ 54 (257)
++|-|+| .|.+|.+++..|++.|++|++.+|++ +..+.+.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~ 43 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLA 43 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHH
Confidence 3688887 69999999999999999999999986 4444444
No 457
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=93.52 E-value=0.1 Score=47.00 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=32.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSK 49 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~ 49 (257)
++.|.|||.|.-|+..|..|+++|++|.++++.++.
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~ 38 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP 38 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 467999999999999999999999999999986543
No 458
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=93.52 E-value=0.12 Score=45.48 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=30.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEeCCh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGY-------FLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~-------~V~v~dr~~ 47 (257)
..||+|||+ |.+|+.+|..|...+. ++.++|+++
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~ 44 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP 44 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC
Confidence 469999998 9999999999998885 799999864
No 459
>PRK06194 hypothetical protein; Provisional
Probab=93.48 E-value=0.24 Score=42.15 Aligned_cols=40 Identities=15% Similarity=-0.044 Sum_probs=33.6
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
++|-|.| .|.+|..++..|++.|++|++.+|+++..+++.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAV 47 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 4688887 589999999999999999999999977655543
No 460
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=93.47 E-value=0.17 Score=46.97 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=31.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
.++|.|||.|..|...|..|.+.|++|+++++.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4699999999999999999999999999998754
No 461
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.46 E-value=0.14 Score=47.54 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=31.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHH--CCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLA--AGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~--~g~~V~v~dr~~~ 48 (257)
..||+|||.|.-|..-|..|++ .||+|++|++.+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 4689999999999999999987 7999999998864
No 462
>PRK11445 putative oxidoreductase; Provisional
Probab=93.44 E-value=0.099 Score=46.28 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=29.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
..|.|||.|.-|.++|..|+++ ++|++++|.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 4799999999999999999999 9999999876
No 463
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.40 E-value=0.16 Score=48.12 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCC
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARN 46 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~ 46 (257)
...+|.|||.|..|...|..|.+.|++|+++++.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 3468999999999999999999999999999864
No 464
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.39 E-value=0.22 Score=41.70 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=36.3
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 14 TTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 14 ~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
.++|-|+|. |.+|..++..|+++|++|++.+|+++..+.+.+
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 368999975 999999999999999999999999887776654
No 465
>PRK06125 short chain dehydrogenase; Provisional
Probab=93.37 E-value=0.26 Score=41.30 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=34.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
++|-|.|. |.+|.+++..|++.|++|++.+|++++.+.+.
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALA 48 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 57888887 78999999999999999999999988766543
No 466
>PRK06720 hypothetical protein; Provisional
Probab=93.36 E-value=0.27 Score=38.86 Aligned_cols=37 Identities=19% Similarity=0.035 Sum_probs=30.8
Q ss_pred CeEEEEcCC-hhHHHHHHHHHHCCCeEEEEeCChhhHh
Q 036264 15 TRIGWIGIG-LMGSPMASRLLAAGYFLTVFARNPSKAL 51 (257)
Q Consensus 15 ~~IgvIG~G-~mG~~la~~L~~~g~~V~v~dr~~~~~~ 51 (257)
+.+-|.|.+ .+|.+++..|.+.|++|++++|+++..+
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~ 54 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQ 54 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 457777876 5999999999999999999999876443
No 467
>PRK06153 hypothetical protein; Provisional
Probab=93.35 E-value=0.11 Score=46.37 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=31.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~ 48 (257)
..+|+|||+|-.|+.++..|++.|. +++++|.+.=
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~V 211 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDF 211 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEe
Confidence 3589999999999999999999997 8999987643
No 468
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.32 E-value=0.11 Score=45.61 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=29.8
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEeCChh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGY-------FLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~-------~V~v~dr~~~ 48 (257)
+||+|||+ |.+|..+|..|+..|. ++.++|++++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~ 44 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQA 44 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCc
Confidence 48999999 9999999999998876 7999998543
No 469
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.29 E-value=0.14 Score=45.24 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=31.3
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 13 STTRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 13 ~~~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
.++||-|.|. |.+|+.++..|.++|++|+++||..
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3579999995 9999999999999999999998854
No 470
>PLN02780 ketoreductase/ oxidoreductase
Probab=93.28 E-value=0.23 Score=43.42 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=34.2
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
..+-|.| .|.+|.++|..|++.|++|++++|++++.+++.
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~ 94 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVS 94 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence 4566777 478999999999999999999999998877654
No 471
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=93.26 E-value=0.22 Score=41.42 Aligned_cols=40 Identities=23% Similarity=0.074 Sum_probs=34.5
Q ss_pred eEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 16 RIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 16 ~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
+|-|.| .|.+|..++..|++.|++|++.+|++++.+.+.+
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~ 43 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAK 43 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 677887 6999999999999999999999999887666543
No 472
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.25 E-value=0.17 Score=50.85 Aligned_cols=35 Identities=37% Similarity=0.435 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
+..||.|||.|.-|.+.|..|++.|++|+++++.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 45789999999999999999999999999999764
No 473
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.24 E-value=0.32 Score=40.14 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=33.4
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHH
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHL 53 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l 53 (257)
+++.|.| .|.+|..++..|++.|++|++.+|++++.+++
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~ 47 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAV 47 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4688887 66999999999999999999999998766554
No 474
>PRK05086 malate dehydrogenase; Provisional
Probab=93.24 E-value=0.12 Score=45.14 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=28.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHH---CCCeEEEEeCChh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLA---AGYFLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~---~g~~V~v~dr~~~ 48 (257)
|||+|||+ |.+|++++..|.. .++++.++||++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~ 38 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV 38 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC
Confidence 69999999 9999999988854 3468999998854
No 475
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=93.24 E-value=0.13 Score=43.77 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=30.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
.|.|||.|..|.++|..|.+.|.+|.++++++.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 589999999999999999999999999998864
No 476
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.19 E-value=0.69 Score=37.55 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=33.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC--e---EEEEeCChhhHhHHhhcCCc
Q 036264 13 STTRIGWIGIGLMGSPMASRLLAAGY--F---LTVFARNPSKALHLQSQGAF 59 (257)
Q Consensus 13 ~~~~IgvIG~G~mG~~la~~L~~~g~--~---V~v~dr~~~~~~~l~~~g~~ 59 (257)
++.|++|||.|++|+-+.-.+++.|. + .++.|...+-..+..+.|+.
T Consensus 3 sk~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~ 54 (310)
T COG4569 3 SKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVA 54 (310)
T ss_pred CcceEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCc
Confidence 45799999999999999988988864 2 23346655555555555553
No 477
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.16 E-value=0.29 Score=40.76 Aligned_cols=40 Identities=15% Similarity=0.024 Sum_probs=34.1
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
++|-|.|. |.+|..++..|++.|++|++.+|++++.+++.
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 48 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETV 48 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 57888875 79999999999999999999999987655443
No 478
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.15 E-value=0.25 Score=43.49 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=38.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhhcCCcc
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPSKALHLQSQGAFL 60 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~~g~~~ 60 (257)
..+|+|+|+|-.|..-.+.....|.+|++++|+++|.+...+.|+..
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~ 213 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH 213 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE
Confidence 35899999997777666666668999999999999999888887643
No 479
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.15 E-value=0.11 Score=47.06 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=29.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCCh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNP 47 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~ 47 (257)
|+|.|+|+|.-|.++|+-|. .|++|+++|.++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~ 32 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKF 32 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCC
Confidence 68999999999999999999 999999999653
No 480
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=93.14 E-value=0.2 Score=43.51 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=31.9
Q ss_pred CCeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhH
Q 036264 14 TTRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKA 50 (257)
Q Consensus 14 ~~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~ 50 (257)
.++|-|.| .|.+|+.++..|++.|++|++.+|++++.
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~ 42 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDR 42 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcch
Confidence 46899998 59999999999999999999888876543
No 481
>PRK06914 short chain dehydrogenase; Provisional
Probab=93.13 E-value=0.26 Score=41.80 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=33.1
Q ss_pred eEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 16 RIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 16 ~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
+|-|.| .|.+|..++..|+++|++|++++|+++..+.+.
T Consensus 5 ~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 44 (280)
T PRK06914 5 IAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLL 44 (280)
T ss_pred EEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 466666 699999999999999999999999988766553
No 482
>PRK06482 short chain dehydrogenase; Provisional
Probab=93.07 E-value=0.26 Score=41.72 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=36.0
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
++|-|.| .|.+|..++..|++.|++|++.+|+++..+.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKA 44 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4688887 5999999999999999999999999988777654
No 483
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.07 E-value=0.26 Score=41.38 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=34.1
Q ss_pred CCeEEEEcC-C-hhHHHHHHHHHHCCCeEEEEeCChhhHhHH
Q 036264 14 TTRIGWIGI-G-LMGSPMASRLLAAGYFLTVFARNPSKALHL 53 (257)
Q Consensus 14 ~~~IgvIG~-G-~mG~~la~~L~~~g~~V~v~dr~~~~~~~l 53 (257)
.+++-|.|. | .+|.+++..|++.|++|++.+|++++.+..
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~ 58 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGET 58 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 367999997 6 699999999999999999999988766544
No 484
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=93.07 E-value=0.18 Score=44.44 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=31.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSK 49 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~ 49 (257)
++|-|.|. |.+|++++..|+++|++|++.+|++..
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~ 40 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPT 40 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCcc
Confidence 68999984 999999999999999999999987654
No 485
>PRK10015 oxidoreductase; Provisional
Probab=93.07 E-value=0.16 Score=46.47 Aligned_cols=35 Identities=29% Similarity=0.267 Sum_probs=31.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
+..|.|||.|.-|.+.|..|+++|++|.+.+|.+.
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~ 39 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 35799999999999999999999999999998753
No 486
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.06 E-value=0.31 Score=42.63 Aligned_cols=57 Identities=19% Similarity=0.210 Sum_probs=46.1
Q ss_pred CCeEEEEcCChhHHHHHHHHH---HCCCeEE-EEeCChhhHhHHhhc-C---CcccCCHHHHHHH
Q 036264 14 TTRIGWIGIGLMGSPMASRLL---AAGYFLT-VFARNPSKALHLQSQ-G---AFLATSPQHLAQS 70 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~---~~g~~V~-v~dr~~~~~~~l~~~-g---~~~~~s~~e~~~~ 70 (257)
..|+||+|+|.|+.-.++.|. +.+|.|+ +.+|+.+++.++++. + .++..|.+|++++
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd 70 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKD 70 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcC
Confidence 358999999999999999885 3467654 569999999999876 3 3567788999887
No 487
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=93.05 E-value=0.13 Score=47.62 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=31.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEeCChh
Q 036264 15 TRIGWIGIGLMGSPMASRLLAAGYFLTVFARNPS 48 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~~~ 48 (257)
++|.|||.|.-|...|..|+++|++|+++.++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~ 35 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQ 35 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4799999999999999999999999999988743
No 488
>PRK06139 short chain dehydrogenase; Provisional
Probab=93.04 E-value=0.28 Score=43.13 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=35.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
++|-|.|. |-+|.+++..|++.|++|++.+|++++.+++.+
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~ 49 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAE 49 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 46888887 899999999999999999999999988766543
No 489
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=93.03 E-value=0.28 Score=40.69 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=34.6
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
++|-|.| .|.+|..+++.|++.|++|++.+|++++.+++.
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 44 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVA 44 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 5788887 689999999999999999999999988766553
No 490
>PRK06196 oxidoreductase; Provisional
Probab=93.03 E-value=0.27 Score=42.75 Aligned_cols=41 Identities=24% Similarity=0.151 Sum_probs=35.1
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
++|-|.|. |.+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~ 68 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALA 68 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46788876 889999999999999999999999887766543
No 491
>PRK05650 short chain dehydrogenase; Provisional
Probab=93.03 E-value=0.25 Score=41.74 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=33.6
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHH
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHL 53 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l 53 (257)
|+|.|+| .|.+|..++..|++.|++|++.+|++++.+.+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~ 40 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEET 40 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3678887 58999999999999999999999998776654
No 492
>PRK06996 hypothetical protein; Provisional
Probab=93.03 E-value=0.14 Score=46.13 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=32.6
Q ss_pred CCCCCCCeEEEEcCChhHHHHHHHHHHCC----CeEEEEeCCh
Q 036264 9 PISPSTTRIGWIGIGLMGSPMASRLLAAG----YFLTVFARNP 47 (257)
Q Consensus 9 ~~~~~~~~IgvIG~G~mG~~la~~L~~~g----~~V~v~dr~~ 47 (257)
.|.+...+|.|||.|..|.++|..|++.| .+|+++++.+
T Consensus 6 ~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 6 SMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred hccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 45555568999999999999999999987 3699998763
No 493
>PRK08251 short chain dehydrogenase; Provisional
Probab=93.02 E-value=0.28 Score=40.73 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=34.5
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
+++-|.| .|.+|..++..|+++|++|++.+|++++.+.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELK 43 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 4577776 899999999999999999999999988776654
No 494
>PRK06500 short chain dehydrogenase; Provisional
Probab=93.02 E-value=0.29 Score=40.52 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=35.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEeCChhhHhHHhh
Q 036264 15 TRIGWIGI-GLMGSPMASRLLAAGYFLTVFARNPSKALHLQS 55 (257)
Q Consensus 15 ~~IgvIG~-G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~~ 55 (257)
++|-|.|. |.+|..++..|++.|++|++.+|++++.+++.+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 48 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARA 48 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH
Confidence 57888885 999999999999999999999999877666554
No 495
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.01 E-value=0.8 Score=41.91 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=34.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--CCeEEEEeCChhh--HhHHhhcCCcc
Q 036264 15 TRIGWIGIGLMGSPMASRLLAA--GYFLTVFARNPSK--ALHLQSQGAFL 60 (257)
Q Consensus 15 ~~IgvIG~G~mG~~la~~L~~~--g~~V~v~dr~~~~--~~~l~~~g~~~ 60 (257)
++|.|||+|..|.+-++.|.+. |++|+++|.++.. .+.|.+ |+..
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~ 56 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVEL 56 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEE
Confidence 5799999999999999999988 5899999975432 234533 6544
No 496
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.98 E-value=0.19 Score=45.01 Aligned_cols=34 Identities=38% Similarity=0.490 Sum_probs=30.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCCh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~ 47 (257)
..||.|||+|..|+.++..|++.|. +++++|++.
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4589999999999999999999998 799999873
No 497
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.98 E-value=0.7 Score=39.83 Aligned_cols=42 Identities=26% Similarity=0.380 Sum_probs=34.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCChhhHhHHhh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNPSKALHLQS 55 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~~~~~~l~~ 55 (257)
..+|.|+|+|..|..+|++|+.+|. +|+++|.+.-....|..
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~r 61 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSS 61 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhccc
Confidence 4589999999999999999999997 79999987554444443
No 498
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=92.95 E-value=0.15 Score=45.80 Aligned_cols=31 Identities=29% Similarity=0.347 Sum_probs=29.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEeCC
Q 036264 16 RIGWIGIGLMGSPMASRLLAAGYFLTVFARN 46 (257)
Q Consensus 16 ~IgvIG~G~mG~~la~~L~~~g~~V~v~dr~ 46 (257)
.|.|||.|..|.+.|..|++.|++|+++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5899999999999999999999999999987
No 499
>PRK05876 short chain dehydrogenase; Provisional
Probab=92.89 E-value=0.31 Score=41.47 Aligned_cols=40 Identities=8% Similarity=-0.030 Sum_probs=33.1
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEeCChhhHhHHh
Q 036264 15 TRIGWIG-IGLMGSPMASRLLAAGYFLTVFARNPSKALHLQ 54 (257)
Q Consensus 15 ~~IgvIG-~G~mG~~la~~L~~~g~~V~v~dr~~~~~~~l~ 54 (257)
+++-|.| .|.+|.+++..|++.|++|++.+|++++.+++.
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~ 47 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAV 47 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3466665 889999999999999999999999987766543
No 500
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.87 E-value=0.17 Score=44.98 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=30.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-eEEEEeCCh
Q 036264 14 TTRIGWIGIGLMGSPMASRLLAAGY-FLTVFARNP 47 (257)
Q Consensus 14 ~~~IgvIG~G~mG~~la~~L~~~g~-~V~v~dr~~ 47 (257)
..||.|||+|..|+.++.+|++.|. +++++|.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4689999999999999999999997 788888764
Done!