BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036266
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 65/130 (50%)
Query: 8 NLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIP 67
N+ S G N ++ LD+S N L G IP I + L L L N GSIP
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 68 KSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSSQS 127
L L LDLSSN L G+IP+++ AL+ L E+++S N L G IP F F
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 730
Query: 128 FISNYALCAH 137
F++N LC +
Sbjct: 731 FLNNPGLCGY 740
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 62/110 (56%)
Query: 6 QINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGS 65
++ L +N +G +P + N L+ L LS N L G IP ++ L L L L N +G
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 66 IPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIP 115
IP+ + +LE L L N+L+G+IP L +NL +++S NRL GEIP
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 65/113 (57%)
Query: 4 ILQINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQ 63
++ ++L N LSG++PS++ +L L L L +N L G+IP + +K L TL L N
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 64 GSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPT 116
G IP + +L ++ LS+N L+G+IPK + L NL L +S N G IP
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 7 INLFSNSLSGSLPSNIQNLKV-LIGLDLSINRLYGDI-PITISGLKD-LTTLFLAGNRSQ 63
++L N SG LP ++ NL L+ LDLS N G I P K+ L L+L N
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 64 GSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIP 115
G IP + + + L L LS N LSG IP SL +LS L++L + N LEGEIP
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 59/116 (50%)
Query: 1 LEYILQINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGN 60
L + + L+ N L G +P + +K L L L N L G+IP +S +L + L+ N
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 61 RSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPT 116
R G IPK L +L L LS+N+ SG IP L +L L+++ N G IP
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 12 NSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFE 71
N L+G +PS + N L + LS NRL G+IP I L++L L L+ N G+IP
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 72 SLASLEFLDLSSNNLSGKIPKSL 94
SL +LDL++N +G IP ++
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAM 555
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKD-LTTLFLAGNRSQGS 65
+N+ SN G +P LK L L L+ N+ G+IP +SG D LT L L+GN G+
Sbjct: 249 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 66 IPKSFESLASLEFLDLSSNNLSGKIP-KSLEALSNLKELNVSYNRLEGEIP 115
+P F S + LE L LSSNN SG++P +L + LK L++S+N GE+P
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 357
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 1 LEYILQINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGN 60
+ Y+ +NL N +SGS+P + +L+ L LDLS N+L G IP +S L LT + L+ N
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Query: 61 RSQGSIPK--SFESLASLEFLD 80
G IP+ FE+ +FL+
Sbjct: 712 NLSGPIPEMGQFETFPPAKFLN 733
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 1 LEYILQINLFSNSLSGSLPSNIQN-LKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAG 59
L+ + ++L N +G +P + L GLDLS N YG +P L +L L+
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 60 NRSQGSIP-KSFESLASLEFLDLSSNNLSGKIPKSLEALS-NLKELNVSYNRLEGEIPTN 117
N G +P + + L+ LDLS N SG++P+SL LS +L L++S N G I N
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 118 V 118
+
Sbjct: 385 L 385
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 31 LDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKI 90
L +S N++ GD+ +S +L L ++ N IP ++L+ LD+S N LSG
Sbjct: 180 LAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF 236
Query: 91 PKSLEALSNLKELNVSYNRLEGEIP 115
+++ + LK LN+S N+ G IP
Sbjct: 237 SRAISTCTELKLLNISSNQFVGPIP 261
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 56 FLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIP--KSLEALSNLKELNVSYNRLE 111
FL+ + GS+ F+ ASL LDLS N+LSG + SL + S LK LNVS N L+
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 136
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 24/137 (17%)
Query: 28 LIGLDLSINRLYGDIPI-----TISGLKDLT----TLFLAGNRSQGSIPKSFESLASLEF 78
L LDLS N L G + + SGLK L TL G S G L SLE
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG------LKLNSLEV 152
Query: 79 LDLSSNNLSGKIPKSL---EALSNLKELNVSYNRLEGEIP----TNVPFGNFSSQSFISN 131
LDLS+N++SG + LK L +S N++ G++ N+ F + SS +F +
Sbjct: 153 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG 212
Query: 132 YALCAHQDSKRTSYLDI 148
D +LDI
Sbjct: 213 IPFLG--DCSALQHLDI 227
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 65/130 (50%)
Query: 8 NLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIP 67
N+ S G N ++ LD+S N L G IP I + L L L N GSIP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 68 KSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSSQS 127
L L LDLSSN L G+IP+++ AL+ L E+++S N L G IP F F
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733
Query: 128 FISNYALCAH 137
F++N LC +
Sbjct: 734 FLNNPGLCGY 743
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 62/110 (56%)
Query: 6 QINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGS 65
++ L +N +G +P + N L+ L LS N L G IP ++ L L L L N +G
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 66 IPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIP 115
IP+ + +LE L L N+L+G+IP L +NL +++S NRL GEIP
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 65/113 (57%)
Query: 4 ILQINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQ 63
++ ++L N LSG++PS++ +L L L L +N L G+IP + +K L TL L N
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 64 GSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPT 116
G IP + +L ++ LS+N L+G+IPK + L NL L +S N G IP
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 7 INLFSNSLSGSLPSNIQNLKV-LIGLDLSINRLYGDI-PITISGLKD-LTTLFLAGNRSQ 63
++L N SG LP ++ NL L+ LDLS N G I P K+ L L+L N
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 64 GSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIP 115
G IP + + + L L LS N LSG IP SL +LS L++L + N LEGEIP
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 59/116 (50%)
Query: 1 LEYILQINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGN 60
L + + L+ N L G +P + +K L L L N L G+IP +S +L + L+ N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 61 RSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPT 116
R G IPK L +L L LS+N+ SG IP L +L L+++ N G IP
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 12 NSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFE 71
N L+G +PS + N L + LS NRL G+IP I L++L L L+ N G+IP
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 72 SLASLEFLDLSSNNLSGKIPKSL 94
SL +LDL++N +G IP ++
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAM 558
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKD-LTTLFLAGNRSQGS 65
+N+ SN G +P LK L L L+ N+ G+IP +SG D LT L L+GN G+
Sbjct: 252 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 66 IPKSFESLASLEFLDLSSNNLSGKIP-KSLEALSNLKELNVSYNRLEGEIP 115
+P F S + LE L LSSNN SG++P +L + LK L++S+N GE+P
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 1 LEYILQINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGN 60
+ Y+ +NL N +SGS+P + +L+ L LDLS N+L G IP +S L LT + L+ N
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 61 RSQGSIPK--SFESLASLEFLD 80
G IP+ FE+ +FL+
Sbjct: 715 NLSGPIPEMGQFETFPPAKFLN 736
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 1 LEYILQINLFSNSLSGSLPSNIQN-LKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAG 59
L+ + ++L N +G +P + L GLDLS N YG +P L +L L+
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 60 NRSQGSIP-KSFESLASLEFLDLSSNNLSGKIPKSLEALS-NLKELNVSYNRLEGEIPTN 117
N G +P + + L+ LDLS N SG++P+SL LS +L L++S N G I N
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 118 V 118
+
Sbjct: 388 L 388
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 31 LDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKI 90
L +S N++ GD+ +S +L L ++ N IP ++L+ LD+S N LSG
Sbjct: 183 LAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239
Query: 91 PKSLEALSNLKELNVSYNRLEGEIP 115
+++ + LK LN+S N+ G IP
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIP 264
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 56 FLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIP--KSLEALSNLKELNVSYNRLE 111
FL+ + GS+ F+ ASL LDLS N+LSG + SL + S LK LNVS N L+
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 24/137 (17%)
Query: 28 LIGLDLSINRLYGDIPI-----TISGLKDLT----TLFLAGNRSQGSIPKSFESLASLEF 78
L LDLS N L G + + SGLK L TL G S G L SLE
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG------LKLNSLEV 155
Query: 79 LDLSSNNLSGKIPKSL---EALSNLKELNVSYNRLEGEIP----TNVPFGNFSSQSFISN 131
LDLS+N++SG + LK L +S N++ G++ N+ F + SS +F +
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG 215
Query: 132 YALCAHQDSKRTSYLDI 148
D +LDI
Sbjct: 216 IPFLG--DCSALQHLDI 230
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 13 SLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFES 72
++SG++P + +K L+ LD S N L G +P +IS L +L + GNR G+IP S+ S
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 73 LASL-EFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGE 113
+ L + +S N L+GKIP + L NL +++S N LEG+
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD 212
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 47/183 (25%)
Query: 1 LEYILQINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDL-TTLFLAG 59
++ ++ ++ N+LSG+LP +I +L L+G+ NR+ G IP + L T++ ++
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 60 NRSQGSIPKSFESL---------------ASLEF-------------------------- 78
NR G IP +F +L AS+ F
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 79 -----LDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSSQSFISNYA 133
LDL +N + G +P+ L L L LNVS+N L GEIP F ++ +N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Query: 134 LCA 136
LC
Sbjct: 304 LCG 306
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 18 LPSNIQNLKVLIGLDLS-INRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASL 76
+PS++ NL L L + IN L G IP I+ L L L++ G+IP + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 77 EFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFS 124
LD S N LSG +P S+ +L NL + NR+ G IP + +G+FS
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS--YGSFS 173
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 15/167 (8%)
Query: 141 KRTSYLDILQATDEFNEWHLLGTESLGSVYKWIFLDETNVAIKVFNLQLERAFR-SFDSK 199
KR S ++ A+D F+ ++LG G VYK D T VA+K + + F ++
Sbjct: 26 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTE 85
Query: 200 CEVHKNVRHRNXXXXX----XXXXXXXXXPWY----LSSCV------MPNGDFPERLNIM 245
E+ HRN P+ ++SC+ P D+P+R I
Sbjct: 86 VEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIA 145
Query: 246 IDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+ A YLH ++H D+K +N LLDE+ A V DF ++KL+
Sbjct: 146 LGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM 192
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 19/169 (11%)
Query: 141 KRTSYLDILQATDEFNEWHLLGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRS---FD 197
KR S ++ A+D F ++LG G VYK D VA+K L+ ER F
Sbjct: 18 KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVK--RLKEERTQGGELQFQ 75
Query: 198 SKCEVHKNVRHRNXXXXX----XXXXXXXXXPWY----LSSCV------MPNGDFPERLN 243
++ E+ HRN P+ ++SC+ P D+P+R
Sbjct: 76 TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQR 135
Query: 244 IMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
I + A YLH ++H D+K +N LLDE+ A V DF ++KL+
Sbjct: 136 IALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM 184
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 81/198 (40%), Gaps = 33/198 (16%)
Query: 139 DSKRTSYLDILQATDEFNEWHLLGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDS 198
+S R +D+ +AT+ F+ L+G G VYK + D VA+K + + F++
Sbjct: 25 ESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFET 84
Query: 199 KCEVHKNVRH------------RNXXXXXXXXXXXXXXPWYLSSCVMP--NGDFPERLNI 244
+ E RH RN +L +P + + +RL I
Sbjct: 85 EIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEI 144
Query: 245 MIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK-------------- 290
I A YLH + ++H D+K N LLDE+ V ++DF ISK
Sbjct: 145 CIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVV 201
Query: 291 --LLGVLLPETFTRKKPT 306
LG + PE F + + T
Sbjct: 202 KGTLGYIDPEYFIKGRLT 219
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 81/198 (40%), Gaps = 33/198 (16%)
Query: 139 DSKRTSYLDILQATDEFNEWHLLGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDS 198
+S R +D+ +AT+ F+ L+G G VYK + D VA+K + + F++
Sbjct: 25 ESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFET 84
Query: 199 KCEVHKNVRH------------RNXXXXXXXXXXXXXXPWYLSSCVMP--NGDFPERLNI 244
+ E RH RN +L +P + + +RL I
Sbjct: 85 EIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEI 144
Query: 245 MIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK-------------- 290
I A YLH + ++H D+K N LLDE+ V ++DF ISK
Sbjct: 145 CIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVV 201
Query: 291 --LLGVLLPETFTRKKPT 306
LG + PE F + + T
Sbjct: 202 KGTLGYIDPEYFIKGRLT 219
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 9 LFSNSLSGSLPSNIQNLKVLIGLDLSIN-RLYGDIPITISGLKDLTTLFLAGNRSQGSIP 67
L SN+L+G + L +L LDLS N +L P T GL L TL L Q P
Sbjct: 62 LHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGP 121
Query: 68 KSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRL 110
F LA+L++L L NNL + L NL L + NR+
Sbjct: 122 GLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 39/92 (42%)
Query: 19 PSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEF 78
P + L L L L N L T L +LT LFL GNR +F L SL+
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDR 180
Query: 79 LDLSSNNLSGKIPKSLEALSNLKELNVSYNRL 110
L L N+++ P + L L L + N L
Sbjct: 181 LLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 55 LFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYN 108
+FL GNR SF+S +L L L SN L+G + L+ L++L++S N
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN 89
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 17 SLPSN-IQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLAS 75
+LP N ++L L L L NR+ GL L L L N P +F L
Sbjct: 142 ALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGR 201
Query: 76 LEFLDLSSNNLSGKIPKSLEALSNLKELNVSYN 108
L L L +NNLS + L L +L+ L ++ N
Sbjct: 202 LMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 20 SNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQ-GSIPKS--FESLASL 76
S QNL +L L+LS L ++GL+DL L L GN Q GSI K+ + + SL
Sbjct: 418 SPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSL 477
Query: 77 EFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGE 113
E L LSS NL ++ L N+ L++S+N L G+
Sbjct: 478 EILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGD 514
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 48 GLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSY 107
GL+++ L L+ N G + L L +L+++SNN+ P L ALS +N+S+
Sbjct: 497 GLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSH 555
Query: 108 NRLE 111
N L+
Sbjct: 556 NPLD 559
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 22 IQNLKVLIGLDLSINRLYGDIP------ITISGLKDLTTLFLAGNRSQGSIPKSFESLAS 75
++ L+ L LDLS + DI + + L+ L L L+ N G ++F+
Sbjct: 345 LEKLENLQKLDLS----HSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQ 400
Query: 76 LEFLDLSSNNLSGKIPKS-LEALSNLKELNVSYNRLE 111
LE LD++ +L K P S + L L+ LN+S+ L+
Sbjct: 401 LELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLD 437
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 237 DFPERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKL 291
D RL++ D+A YLH+ R+ P+VH DLK N L+D+ V DF +S+L
Sbjct: 135 DERRRLSMAYDVAKGMNYLHN-RNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRL 188
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 24 NLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGS-IPKSFESLASLEFLDLS 82
+L+ LI LD+S +GL L L +AGN Q + +P F L +L FLDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 83 SNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNF 123
L P + +LS+L+ LN++ N+L+ +VP G F
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLK-----SVPDGIF 514
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 49 LKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYN 108
L L+TL L GN Q +F L+SL+ L NL+ + L LKELNV++N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 109 RLE 111
++
Sbjct: 135 LIQ 137
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 35 INRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLS--GKIPK 92
+N +G P LK L L N+ + + L SLEFLDLS N LS G +
Sbjct: 312 VNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 93 SLEALSNLKELNVSYN 108
S ++LK L++S+N
Sbjct: 368 SDFGTTSLKYLDLSFN 383
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 20 SNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQG-SIPKSFESLASLEF 78
S + +L+ L+ ++ ++ L I LK L L +A N Q +P+ F +L +LE
Sbjct: 97 SGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 79 LDLSSNNLSGKIPKSLEALSNL 100
LDLSSN + L L +
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQM 175
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 25 LKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGS-IPKSFESLASLEFLDLSS 83
L+ LI LD+S +GL L L +AGN Q + +P F L +L FLDLS
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 84 NNLSGKIPKSLEALSNLKELNVSYN 108
L P + +LS+L+ LN+S+N
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 49 LKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYN 108
L L+TL L GN Q +F L+SL+ L NL+ + L LKELNV++N
Sbjct: 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158
Query: 109 RLE 111
++
Sbjct: 159 LIQ 161
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 35 INRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLS--GKIPK 92
+N +G P LK L L N+ + + L SLEFLDLS N LS G +
Sbjct: 336 VNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQ 391
Query: 93 SLEALSNLKELNVSYN 108
S +LK L++S+N
Sbjct: 392 SDFGTISLKYLDLSFN 407
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 20 SNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQG-SIPKSFESLASLEF 78
S + +L+ L+ ++ ++ L + PI LK L L +A N Q +P+ F +L +LE
Sbjct: 121 SGLSSLQKLVAVETNLASL-ENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 177
Query: 79 LDLSSNNLSGKIPKSLEALSNL 100
LDLSSN + L L +
Sbjct: 178 LDLSSNKIQSIYCTDLRVLHQM 199
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 31/172 (18%)
Query: 144 SYLDILQATDEFNEWHL------LGTESLGSVYKWIFLDETNVAIK----VFNLQLERAF 193
S+ ++ T+ F+E + +G G VYK +++ T VA+K + ++ E
Sbjct: 16 SFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKG-YVNNTTVAVKKLAAMVDITTEELK 74
Query: 194 RSFDSKCEVHKNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNGDFPERLN---------- 243
+ FD + +V +H N L MPNG +RL+
Sbjct: 75 QQFDQEIKVMAKCQHENLVELLGFSSDGD--DLCLVYVYMPNGSLLDRLSCLDGTPPLSW 132
Query: 244 -----IMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
I A +LH +H D+K +N LLDE A +SDF +++
Sbjct: 133 HMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLAR 181
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 25 LKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGS-IPKSFESLASLEFLDLSS 83
L+ LI LD+S +GL L L +AGN Q + +P F L +L FLDLS
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 84 NNLSGKIPKSLEALSNLKELNVSYN 108
L P + +LS+L+ LN+S+N
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 48 GLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSY 107
L L+TL L GN Q +F L+SL+ L NL+ + L LKELNV++
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 108 NRLEG 112
N ++
Sbjct: 134 NLIQS 138
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 35 INRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLS--GKIPK 92
+N +G P LK L L N+ + + L SLEFLDLS N LS G +
Sbjct: 312 VNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 93 SLEALSNLKELNVSYN 108
S ++LK L++S+N
Sbjct: 368 SDFGTTSLKYLDLSFN 383
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 20 SNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQG-SIPKSFESLASLEF 78
S + +L+ L+ ++ ++ L + PI LK L L +A N Q +P+ F +L +LE
Sbjct: 97 SGLSSLQKLVAVETNLASL-ENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 79 LDLSSNNLSGKIPKSLEALSNL 100
LDLSSN + L L +
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQM 175
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 31/172 (18%)
Query: 144 SYLDILQATDEFNEWHL------LGTESLGSVYKWIFLDETNVAIK----VFNLQLERAF 193
S+ ++ T+ F+E + +G G VYK +++ T VA+K + ++ E
Sbjct: 16 SFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKG-YVNNTTVAVKKLAAMVDITTEELK 74
Query: 194 RSFDSKCEVHKNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNGDFPERLN---------- 243
+ FD + +V +H N L MPNG +RL+
Sbjct: 75 QQFDQEIKVMAKCQHENLVELLGFSSDGD--DLCLVYVYMPNGSLLDRLSCLDGTPPLSW 132
Query: 244 -----IMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
I A +LH +H D+K +N LLDE A +SDF +++
Sbjct: 133 HMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLAR 181
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 24 NLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGS-IPKSFESLASLEFLDLS 82
+L+ LI LD+S +GL L L +AGN Q + +P F L +L FLDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 83 SNNLSGKIPKSLEALSNLKELNVSYN 108
L P + +LS+L+ LN+S+N
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 31/172 (18%)
Query: 144 SYLDILQATDEFNEWHL------LGTESLGSVYKWIFLDETNVAIK----VFNLQLERAF 193
S+ ++ T+ F+E + +G G VYK +++ T VA+K + ++ E
Sbjct: 10 SFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKG-YVNNTTVAVKKLAAMVDITTEELK 68
Query: 194 RSFDSKCEVHKNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNGDFPERLN---------- 243
+ FD + +V +H N L MPNG +RL+
Sbjct: 69 QQFDQEIKVMAKCQHENLVELLGFSSDGD--DLCLVYVYMPNGSLLDRLSCLDGTPPLSW 126
Query: 244 -----IMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
I A +LH +H D+K +N LLDE A +SDF +++
Sbjct: 127 HMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLAR 175
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 6 QINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGS 65
+++L + L G LPS ++ L +L L LS+N I+ + LT L++ GN +
Sbjct: 279 ELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLH 337
Query: 66 IP-KSFESLASLEFLDLSSNNLSGKIPKSLEA--LSNLKELNVSYNR 109
+ E L +L+ LDLS N++ SL+ LS+L+ LN+S+N
Sbjct: 338 LGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNE 384
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 20 SNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQ-GSIPKS--FESLASL 76
S QNL L L+L+ L ++GL L L L GN Q G+I K+ +++ SL
Sbjct: 416 SPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSL 475
Query: 77 EFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRL 110
E L LSS L ++ +L + +++S+N L
Sbjct: 476 EVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 22 IQNLKVLIGLDLSINRLYGD--IPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFL 79
++ L L LDLS N + + + L L TL L+ N G ++F+ LE L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 80 DLSSNNLSGKIPKS-LEALSNLKELNVSYNRLE 111
DL+ L P+S + L L+ LN++Y L+
Sbjct: 403 DLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLD 435
>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|C Chain C, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|D Chain D, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|E Chain E, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|F Chain F, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
Length = 384
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 245 MIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+ ++ +A +YL + R ++H D+KP N LLDE H++DFNI+ +L
Sbjct: 121 ICELVMALDYLQNQR---IIHRDMKPDNILLDEHGHVHITDFNIAAML 165
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 17 SLPSNIQNLKVLIGLDLSINRLYGDIPI-TISGLKDLTTLFLAGNRSQGSIPKSFESLAS 75
SLP Q L L LD+S NRL +P+ + GL +L L+L GN + P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 76 LEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSSQ 126
LE L L++NNL+ L L NL L + N L +P G F S
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-----YTIPKGFFGSH 195
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%)
Query: 18 LPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLE 77
+P + N K L +DLS NR+ + S + L TL L+ NR + P++F+ L SL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 78 FLDLSSNNLSGKIPKSLEALSNLKELNVSYNRL 110
L L N++S + LS L L + N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 2 EYILQINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNR 61
+++ I+L +N +S + N+ L+ L LS NRL P T GLK L L L GN
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113
Query: 62 SQGSIPKSFESLASLEFLDLSSNNL 86
+F L++L L + +N L
Sbjct: 114 ISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPI-TISGLKDLTTLFLAGNRSQGS 65
++L N L SLP Q L L LD+S NRL +P+ + GL +L L+L GN +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTL 139
Query: 66 IPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSS 125
P LE L L++NNL+ L L NL L + N L +P G F S
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-----YTIPKGFFGS 194
Query: 126 Q 126
Sbjct: 195 H 195
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPI-TISGLKDLTTLFLAGNRSQGS 65
++L N L SLP Q L L LD+S NRL +P+ + GL +L L+L GN +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTL 139
Query: 66 IPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSS 125
P LE L L++NNL+ L L NL L + N L +P G F S
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-----YTIPKGFFGS 194
Query: 126 Q 126
Sbjct: 195 H 195
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 17 SLPSNIQNLKVLIGLDLSINRLYGDIPI-TISGLKDLTTLFLAGNRSQGSIPKSFESLAS 75
SLP Q L L LD+S NRL +P+ + GL +L L+L GN + P
Sbjct: 92 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 150
Query: 76 LEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSSQ 126
LE L L++NNL+ L L NL L + N L +P G F S
Sbjct: 151 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-----YTIPKGFFGSH 196
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPI-TISGLKDLTTLFLAGNRSQGS 65
++L N L SLP Q L L LD+S NRL +P+ + GL +L L+L GN +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTL 139
Query: 66 IPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSS 125
P LE L L++NNL+ L L NL L + N L +P G F S
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-----YTIPKGFFGS 194
Query: 126 Q 126
Sbjct: 195 H 195
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 118 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 160
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGVLLPET 299
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K VL PE+
Sbjct: 140 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAK---VLSPES 186
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 138 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 180
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 143 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 185
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 138 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 180
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 140 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 182
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 141 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 183
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 115 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 157
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 117 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 159
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 140 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 182
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 140 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 182
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGVLLPET 299
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K VL PE+
Sbjct: 140 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAK---VLSPES 186
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 138 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 180
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 141 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 183
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 116 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 158
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 138 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 180
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 140 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 182
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGVLLPET 299
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K VL PE+
Sbjct: 137 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAK---VLSPES 183
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGVLLPET 299
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K VL PE+
Sbjct: 137 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAK---VLSPES 183
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 122 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 164
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ A EYLH G+ ++H DLKP N LL+EDM ++DF +K+L
Sbjct: 145 EIVSALEYLH-GKG--IIHRDLKPENILLNEDMHIQITDFGTAKVL 187
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 237 DFPERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKL 291
D RL++ D+A YLH+ R+ P+VH +LK N L+D+ V DF +S+L
Sbjct: 135 DERRRLSMAYDVAKGMNYLHN-RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRL 188
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPI-TISGLKDLTTLFLAGNRSQGS 65
++L N L SLP Q L L LD+S NRL +P+ + GL +L L+L GN +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTL 139
Query: 66 IPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSS 125
P LE L L++N+L+ L L NL L + N L +P G F S
Sbjct: 140 PPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL-----YTIPKGFFGS 194
Query: 126 Q 126
Sbjct: 195 H 195
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 31 LDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKS-FESLASLEFLDLSSNNLSGK 89
LDL N L L LT L+L GN+ Q S+P F L SL +L+LS+N L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 90 IPKSLEALSNLKELNVSYNRLE 111
+ L+ LKEL ++ N+L+
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQ 113
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 7 INLFSNSLSGSLPSNI-QNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGS 65
++L +NSL SLP+ + L L L L N+L + L LT L L+ N+ Q S
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-S 90
Query: 66 IPKS-FESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFS 124
+P F+ L L+ L L++N L + L+ LK+L + N+L+ +P V F +
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGV-FDRLT 148
Query: 125 SQSFI 129
S +I
Sbjct: 149 SLQYI 153
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPI-TISGLKDLTTLFLAGNRSQGS 65
++L N L SLP Q L L LD+S NRL +P+ + GL +L L+L GN +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTL 139
Query: 66 IPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSS 125
P LE L L++N L+ L L NL L + N L +P G F S
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL-----YTIPKGFFGS 194
Query: 126 Q 126
Sbjct: 195 H 195
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPI-TISGLKDLTTLFLAGNRSQGS 65
++L N L SLP Q L L LD+S NRL +P+ + GL +L L+L GN +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTL 139
Query: 66 IPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSS 125
P LE L L++N L+ L L NL L + N L +P G F S
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL-----YTIPKGFFGS 194
Query: 126 Q 126
Sbjct: 195 H 195
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 17 SLPSNIQNLKVLIGLDLSINRLYGDIPI-TISGLKDLTTLFLAGNRSQGSIPKSFESLAS 75
SLP Q L L LD+S NRL +P+ + GL +L L+L GN + P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 76 LEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSSQ 126
LE L L++N L+ L L NL L + N L +P G F S
Sbjct: 150 LEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL-----YTIPKGFFGSH 195
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 17 SLPSNIQNLKVLIGLDLSINRLYGDIPI-TISGLKDLTTLFLAGNRSQGSIPKSFESLAS 75
SLP Q L L LD+S NRL +P+ + GL +L L+L GN + P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 76 LEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSSQ 126
LE L L++N L+ L L NL L + N L +P G F S
Sbjct: 150 LEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL-----YTIPKGFFGSH 195
>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A
Natural Jnk1 Inhibitor
Length = 379
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
PE TR E+I+G
Sbjct: 183 TPEVVTRYYRAPEVILG 199
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 31/172 (18%)
Query: 144 SYLDILQATDEFNEWHL------LGTESLGSVYKWIFLDETNVAIK----VFNLQLERAF 193
S+ ++ T+ F+E + G G VYK +++ T VA+K + ++ E
Sbjct: 7 SFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKG-YVNNTTVAVKKLAAMVDITTEELK 65
Query: 194 RSFDSKCEVHKNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNGDFPERLN---------- 243
+ FD + +V +H N L PNG +RL+
Sbjct: 66 QQFDQEIKVXAKCQHENLVELLGFSSDGDD--LCLVYVYXPNGSLLDRLSCLDGTPPLSW 123
Query: 244 -----IMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
I A +LH +H D+K +N LLDE A +SDF +++
Sbjct: 124 HXRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLAR 172
>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv976
Length = 323
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLL---DEDMVAHVSDFNISKLLG 293
M LA +YLH ++H DLKP N LL +ED + ++DF SK+LG
Sbjct: 123 MLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG 168
>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In
Complex With Inhibitor Pv1533
Length = 322
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLL---DEDMVAHVSDFNISKLLG 293
M LA +YLH ++H DLKP N LL +ED + ++DF SK+LG
Sbjct: 122 MLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG 167
>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1531
Length = 322
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLL---DEDMVAHVSDFNISKLLG 293
M LA +YLH ++H DLKP N LL +ED + ++DF SK+LG
Sbjct: 123 MLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG 168
>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A
Specific Inhibitor
pdb|2W7X|A Chain A, Cellular Inhibition Of Checkpoint Kinase 2 And
Potentiation Of Cytotoxic Drugs By Novel Chk2 Inhibitor
Pv1019
pdb|2YIQ|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1322
pdb|2YIR|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1352
pdb|2YIT|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Pv1162, A Novel Inhibitor
pdb|2YCQ|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1115
pdb|2YCS|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Pv788
Length = 323
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLL---DEDMVAHVSDFNISKLLG 293
M LA +YLH ++H DLKP N LL +ED + ++DF SK+LG
Sbjct: 123 MLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG 168
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKIRHEKLVQLYAVVSE 84
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ + M G DF + RL ++DMA + + VH DL+
Sbjct: 85 E---PIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 141
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 142 AANILVGENLVCKVADFGLARLI 164
>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp
pdb|2CN8|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Debromohymenialdisine
pdb|2WTC|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTD|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTI|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTJ|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2XBJ|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2XM8|A Chain A, Co-Crystal Structure Of A Small Molecule Inhibitor Bound
To The Kinase Domain Of Chk2
pdb|2XM9|A Chain A, Structure Of A Small Molecule Inhibitor With The Kinase
Domain Of Chk2
pdb|4A9R|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9S|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9T|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9U|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
Length = 329
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLL---DEDMVAHVSDFNISKLLG 293
M LA +YLH ++H DLKP N LL +ED + ++DF SK+LG
Sbjct: 129 MLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG 174
>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O17|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O2M|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
pdb|3O2M|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
Length = 370
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
PE TR E+I+G
Sbjct: 183 EPEVVTRYYRAPEVILG 199
>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|B Chain B, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|C Chain C, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|D Chain D, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|E Chain E, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|F Chain F, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|G Chain G, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|H Chain H, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
Length = 443
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLL---DEDMVAHVSDFNISKLLG 293
M LA +YLH ++H DLKP N LL +ED + ++DF SK+LG
Sbjct: 262 MLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG 307
>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2G01|B Chain B, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2GMX|A Chain A, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2GMX|B Chain B, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2H96|A Chain A, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2H96|B Chain B, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2NO3|A Chain A, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
pdb|2NO3|B Chain B, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
Length = 370
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
PE TR E+I+G
Sbjct: 183 EPEVVTRYYRAPEVILG 199
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVF---NLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
LG G V+ + T VAIK N+ E +F + +V K +RH
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLKPGNMSPE----AFLQEAQVMKKLRHEKLVQLYAV 248
Query: 218 XXXXXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHC 266
P Y+ + M G DF + RL ++DMA + + VH
Sbjct: 249 VSEE---PIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHR 305
Query: 267 DLKPSNNLLDEDMVAHVSDFNISKLL 292
DL+ +N L+ E++V V+DF + +L+
Sbjct: 306 DLRAANILVGENLVCKVADFGLGRLI 331
>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6U|B Chain B, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
Length = 419
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLL---DEDMVAHVSDFNISKLLG 293
M LA +YLH ++H DLKP N LL +ED + ++DF SK+LG
Sbjct: 248 MLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG 293
>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And
Potent Inhibitors For Akt: Synthesis And Sar Studies
Length = 337
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+DE V+DF +K
Sbjct: 137 IVLTFEYLH---SLDLIYRDLKPENLLIDEQGYIQVTDFGFAK 176
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 250
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ + M G DF + RL ++DMA + + VH DL+
Sbjct: 251 E---PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 307
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 308 AANILVGENLVCKVADFGLARLI 330
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 250
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ + M G DF + RL ++DMA + + VH DL+
Sbjct: 251 E---PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 307
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 308 AANILVGENLVCKVADFGLARLI 330
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 19 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 77
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ + M G DF + RL ++DMA + + VH DL+
Sbjct: 78 E---PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 134
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 135 AANILVGENLVCKVADFGLARLI 157
>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|A Chain A, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|A Chain A, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
Length = 350
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 15/76 (19%)
Query: 227 YLSSCVMPNGDF------------PERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNL 274
Y+ MP GD P + L FEYLH S +++ DLKP N L
Sbjct: 117 YMVMEYMPGGDMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLL 173
Query: 275 LDEDMVAHVSDFNISK 290
+D+ V+DF +K
Sbjct: 174 IDQQGYIKVADFGFAK 189
>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With
Y- 27632
Length = 350
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 15/76 (19%)
Query: 227 YLSSCVMPNGDF------------PERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNL 274
Y+ MP GD P + L FEYLH S +++ DLKP N L
Sbjct: 117 YMVMEYMPGGDMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLL 173
Query: 275 LDEDMVAHVSDFNISK 290
+D+ V+DF +K
Sbjct: 174 IDQQGYIKVADFGFAK 189
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 84
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ + M G DF + RL ++DMA + + VH DL+
Sbjct: 85 E---PIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 141
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 142 AANILVGENLVCKVADFGLARLI 164
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 15 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 73
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ + M G DF + RL ++DMA + + VH DL+
Sbjct: 74 E---PIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 130
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 131 AANILVGENLVCKVADFGLARLI 153
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 226 WYLSSCVMPNGDFPERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSD 285
W C + + + L+I I +A A E+LH S ++H DLKPSN D V V D
Sbjct: 151 WMNRRCSLEDREHGVCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGD 207
Query: 286 FNI 288
F +
Sbjct: 208 FGL 210
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 333
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ + M G DF + RL ++DMA + + VH DL+
Sbjct: 334 E---PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 390
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 391 AANILVGENLVCKVADFGLARLI 413
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 17 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 75
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ + M G DF + RL ++DMA + + VH DL+
Sbjct: 76 E---PIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 132
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 133 AANILVGENLVCKVADFGLARLI 155
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 84
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ + M G DF + RL ++DMA + + VH DL+
Sbjct: 85 E---PIYIVTEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 141
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 142 AANILVGENLVCKVADFGLARLI 164
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 250
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ M G DF + RL ++DMA + + VH DL+
Sbjct: 251 E---PIYIVGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 307
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 308 AANILVGENLVCKVADFGLARLI 330
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 31/166 (18%)
Query: 151 ATDEFNEWHLLGTESLGSVYKWIFL-DETNVAIKVFNL-------QLERAFRSFDSKCEV 202
A +E +G G V+K + D++ VAIK L ++ F+ F + +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 203 HKNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNGDFPERL-------------NIMIDMA 249
N+ H N P + +P GD RL +M+D+A
Sbjct: 77 MSNLNHPNIVKLYGLMHN----PPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIA 132
Query: 250 LAFEYLHHGRSTPMVHCDLKPSN---NLLDED--MVAHVSDFNISK 290
L EY+ + ++ P+VH DL+ N LDE+ + A V+DF +S+
Sbjct: 133 LGIEYMQN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQ 177
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 226 WYLSSCVMPNGDFPERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSD 285
W C + + L+I + +A A E+LH S ++H DLKPSN D V V D
Sbjct: 105 WMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGD 161
Query: 286 FNI 288
F +
Sbjct: 162 FGL 164
>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map
Kinase Jnk1
Length = 370
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M + ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLVGIKHLH---SAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 183 TPYVVTRYYRAPEVILG 199
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 31/166 (18%)
Query: 151 ATDEFNEWHLLGTESLGSVYKWIFL-DETNVAIKVFNL-------QLERAFRSFDSKCEV 202
A +E +G G V+K + D++ VAIK L ++ F+ F + +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 203 HKNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNGDFPERL-------------NIMIDMA 249
N+ H N P + +P GD RL +M+D+A
Sbjct: 77 MSNLNHPNIVKLYGLMHN----PPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIA 132
Query: 250 LAFEYLHHGRSTPMVHCDLKPSN---NLLDED--MVAHVSDFNISK 290
L EY+ + ++ P+VH DL+ N LDE+ + A V+DF++S+
Sbjct: 133 LGIEYMQN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFSLSQ 177
>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M + ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLVGIKHLH---SAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 183 TPYVVTRYYRAPEVILG 199
>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map
Kinase Jnk1
Length = 370
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M + ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLVGIKHLH---SAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 183 TPYVVTRYYRAPEVILG 199
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ M+D+A EYL S +H DL N +L EDM V+DF +S+
Sbjct: 140 VRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTVCVADFGLSR 185
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
L M+D+AL EYL + +H DL N +L +DM V+DF +SK
Sbjct: 150 LKFMVDIALGMEYLSNRN---FLHRDLAARNCMLRDDMTVCVADFGLSK 195
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 49 LKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSL-EALSNLKELNVSY 107
L +L L L N+ Q F+ L +L +L+L+ N L +PK + + L+NL EL++SY
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSY 166
Query: 108 NRLEGEIPTNVPFGNFSSQSFISNYALCAHQ 138
N+L+ ++P G F + + + L +Q
Sbjct: 167 NQLQ-----SLPEGVFDKLTQLKDLRLYQNQ 192
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 49 LKDLTTLFLAGNRSQGSIPKS-FESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSY 107
L +LT L LA N+ Q S+PK F+ L +L LDLS N L + L+ LK+L +
Sbjct: 132 LTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 108 NRLEGEIPTNVPFGNFSSQSFI 129
N+L+ +P V F +S +I
Sbjct: 191 NQLKS-VPDGV-FDRLTSLQYI 210
>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
Length = 350
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
pdb|1J3H|B Chain B, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
Length = 350
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 345
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 145 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 184
>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The
Catalytic Subunit Of Camp-Dependent Protein Kinase
pdb|3TNP|C Chain C, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|F Chain F, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNQ|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 350
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
pdb|1SYK|B Chain B, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
Length = 350
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
pdb|2CPK|E Chain E, Crystal Structure Of The Catalytic Subunit Of Cyclic
Adenosine Monophosphate-Dependent Protein Kinase
pdb|4DG0|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20 And
Amp-Pnp
pdb|4DG2|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20
pdb|4DH1|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With Low Mg2+, Atp And Ip20
pdb|4DH3|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Atp And Ip20
pdb|4DH5|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Adp,
Phosphate, And Ip20
pdb|4DH7|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20'
pdb|4DH8|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20
Length = 350
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of
Camp-Dependent Protein Kinase And Adenosine Further
Defines Conformational Flexibility
pdb|1BX6|A Chain A, Crystal Structure Of The Potent Natural Product Inhibitor
Balanol In Complex With The Catalytic Subunit Of Camp-
Dependent Protein Kinase
Length = 350
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of
Camp-Dependent Protein Kinase
Length = 350
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant
Catalytic Subunit Of Camp-Dependent Protein Kinase
Complexed With The Peptide Inhibitor Pki(5-24) And
Adenosine
pdb|1JLU|E Chain E, Crystal Structure Of The Catalytic Subunit Of
Camp-dependent Protein Kinase Complexed With A
Phosphorylated Substrate Peptide And Detergent
pdb|1RE8|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 2
pdb|1REJ|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 1
pdb|1REK|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 8
pdb|2QVS|E Chain E, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
pdb|3FJQ|E Chain E, Crystal Structure Of Camp-Dependent Protein Kinase
Catalytic Subunit Alpha In Complex With Peptide
Inhibitor Pki Alpha (6-25)
pdb|3IDB|A Chain A, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3IDC|A Chain A, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3O7L|D Chain D, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
pdb|3OW3|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|1ATP|E Chain E, 2.2 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
Mnatp And A Peptide Inhibitor
pdb|4DIN|A Chain A, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 350
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
A Peptide Inhibitor And Detergent
Length = 350
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To
Hydroxyfasudil
Length = 351
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 151 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 190
>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 84
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ M G DF + RL ++DMA + + VH DL+
Sbjct: 85 E---PIYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 141
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 142 AANILVGENLVCKVADFGLARLI 164
>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp-
Dependent Protein Kinase Complexed With A Substrate
Peptide, Adp And Detergent
Length = 350
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
pdb|4DFY|E Chain E, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
Length = 371
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 171 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 210
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 245 MIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ ++ALA ++LH S +++ DLKP N LLDE+ ++DF +SK
Sbjct: 132 LAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSK 174
>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent
Protein Kinase
Length = 350
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 245 MIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ ++ALA ++LH S +++ DLKP N LLDE+ ++DF +SK
Sbjct: 133 LAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSK 175
>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent
Protein Kinase With Unphosphorylated Turn Motif
Length = 371
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 171 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 210
>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
And Amp-Pnp
pdb|4DFZ|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
Length = 350
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H89 Protein
Kinase Inhibitor N-[2-
(4-Bromocinnamylamino)ethyl]-5-Isoquinoline
pdb|1YDR|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H7 Protein
Kinase Inhibitor 1-(5-
Isoquinolinesulfonyl)-2-Methylpiperazine
pdb|1YDS|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H8 Protein
Kinase Inhibitor [n-(2-Methylamino)ethyl]-5-
Isoquinolinesulfonamide
Length = 350
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1XH5|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2GFC|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3AGL|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3VQH|A Chain A, Bromine Sad Partially Resolves Multiple Binding Modes For
Pka Inhibitor H-89
Length = 351
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 151 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 190
>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1XH4|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|3BWJ|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Lead Compound Arc-1034
pdb|3KKV|A Chain A, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor
Length = 350
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol
Length = 351
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 151 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 190
>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
A- 443654
Length = 351
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 151 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 190
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
pdb|1Q8T|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor H-1152p
pdb|1SVE|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1VEB|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|3E8C|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|D Chain D, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8E|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|P Chain P, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
Length = 350
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-670
pdb|3L9L|A Chain A, Crystal Structure Of Pka With Compound 36
pdb|3L9L|B Chain B, Crystal Structure Of Pka With Compound 36
pdb|3OOG|A Chain A, Human Camp-Dependent Protein Kinase In Complex With A
Small Fragment
pdb|3OVV|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OWP|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OXT|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3P0M|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3POO|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
Length = 351
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 151 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 190
>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl)amide
pdb|2C1B|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
(4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2VO7|A Chain A, Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|3AG9|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
pdb|3AG9|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
Length = 351
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 151 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 190
>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of
Camp-Dependent Protein Kinase And An Inhibitor Peptide
Displays An Open Conformation
Length = 350
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|2F7E|E Chain E, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|E Chain E, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|E Chain E, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2OH0|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
Length = 351
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 151 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 190
>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|A Chain A, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
Length = 336
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 136 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 175
>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
pdb|4AE9|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
Length = 343
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 143 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 182
>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|B Chain B, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|E Chain E, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
Length = 371
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 171 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 210
>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit
Of Camp- Dependent Protein Kinase Reveal Open And Closed
Conformations
Length = 350
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 386
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 128 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 184
Query: 296 LPETFTRKKPTIEMIIG 312
+P TR E+I+G
Sbjct: 185 VPFVVTRYYRAPEVILG 201
>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
pdb|4AE6|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
Length = 343
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 143 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 182
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 84
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ + M G DF + RL ++DMA + + VH DL
Sbjct: 85 E---PIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLA 141
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 142 AANILVGENLVCKVADFGLARLI 164
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 245 MIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ ++ALA ++LH S +++ DLKP N LLDE+ ++DF +SK
Sbjct: 132 LAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSK 174
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLE--RAFRSFDSKCEVHKNVRHRNX---XXXX 215
+G+ S G+VYK + +VA+K+ N+ + ++F ++ V + RH N
Sbjct: 21 IGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 78
Query: 216 XXXXXXXXXPWYLSSCVMPNGDFPER-------LNIMIDMALAFEYLHHGRSTPMVHCDL 268
W S + + E ++I A +YLH + ++H DL
Sbjct: 79 TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 135
Query: 269 KPSNNLLDEDMVAHVSDFNISKL 291
K +N L ED+ + DF ++ +
Sbjct: 136 KSNNIFLHEDLTVKIGDFGLATV 158
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N ++D+ V+DF ++K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLMIDQQGYIQVTDFGLAK 189
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 17/141 (12%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLE--RAFRSFDSKCEVHKNVRHRNX---XXXX 215
+G+ S G+VYK + +VA+K+ N+ + ++F ++ V + RH N
Sbjct: 44 IGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 101
Query: 216 XXXXXXXXXPWYLSSCVMPNGDFPER-------LNIMIDMALAFEYLHHGRSTPMVHCDL 268
W S + + E ++I A +YLH + ++H DL
Sbjct: 102 TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 158
Query: 269 KPSNNLLDEDMVAHVSDFNIS 289
K +N L ED+ + DF ++
Sbjct: 159 KSNNIFLHEDLTVKIGDFGLA 179
>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk
Inhibitor For The Prevention Of Ischemia-Reperfusion
Injury
pdb|3TTI|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-930, An Orally
Active Anti-Fibrotic Jnk Inhibitor
Length = 464
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 164 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 220
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 221 TPYVVTRYYRAPEVILG 237
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLE--RAFRSFDSKCEVHKNVRHRNX---XXXX 215
+G+ S G+VYK + +VA+K+ N+ + ++F ++ V + RH N
Sbjct: 44 IGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 101
Query: 216 XXXXXXXXXPWYLSSCVMPNGDFPER-------LNIMIDMALAFEYLHHGRSTPMVHCDL 268
W S + + E ++I A +YLH + ++H DL
Sbjct: 102 TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 158
Query: 269 KPSNNLLDEDMVAHVSDFNISKL 291
K +N L ED+ + DF ++ +
Sbjct: 159 KSNNIFLHEDLTVKIGDFGLATV 181
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLE--RAFRSFDSKCEVHKNVRHRNX---XXXX 215
+G+ S G+VYK + +VA+K+ N+ + ++F ++ V + RH N
Sbjct: 16 IGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 216 XXXXXXXXXPWYLSSCVMPNGDFPER-------LNIMIDMALAFEYLHHGRSTPMVHCDL 268
W S + + E ++I A +YLH + ++H DL
Sbjct: 74 TAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 130
Query: 269 KPSNNLLDEDMVAHVSDFNISKL 291
K +N L ED+ + DF ++ +
Sbjct: 131 KSNNIFLHEDLTVKIGDFGLATV 153
>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor,
Sr- 3451
Length = 353
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 183 TPYVVTRYYRAPEVILG 199
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLE--RAFRSFDSKCEVHKNVRHRNX---XXXX 215
+G+ S G+VYK + +VA+K+ N+ + ++F ++ V + RH N
Sbjct: 18 IGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 75
Query: 216 XXXXXXXXXPWYLSSCVMPNGDFPER-------LNIMIDMALAFEYLHHGRSTPMVHCDL 268
W S + + E ++I A +YLH + ++H DL
Sbjct: 76 TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 132
Query: 269 KPSNNLLDEDMVAHVSDFNISKL 291
K +N L ED+ + DF ++ +
Sbjct: 133 KSNNIFLHEDLTVKIGDFGLATV 155
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLE--RAFRSFDSKCEVHKNVRHRNX---XXXX 215
+G+ S G+VYK + +VA+K+ N+ + ++F ++ V + RH N
Sbjct: 21 IGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 78
Query: 216 XXXXXXXXXPWYLSSCVMPNGDFPER-------LNIMIDMALAFEYLHHGRSTPMVHCDL 268
W S + + E ++I A +YLH + ++H DL
Sbjct: 79 TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 135
Query: 269 KPSNNLLDEDMVAHVSDFNISKL 291
K +N L ED+ + DF ++ +
Sbjct: 136 KSNNIFLHEDLTVKIGDFGLATV 158
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 LDLSINRLYGDIPITISGLK--DLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSG 88
L L+ N+L T SGLK +LT L L+ N SF L SL +L L NN+
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 89 KIPKSLEALSNLKELNV 105
P+S LSNL+ L++
Sbjct: 287 LSPRSFYGLSNLRYLSL 303
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 67 PKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRL 110
P F L +L LDLS+NN++ LE L NL+ L+ +N L
Sbjct: 473 PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNL 516
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 4 ILQINLFSNSLSGSLPSNIQNLKV--LIGLDLSINRLYGDIPITISGLKDLTTLFLAGNR 61
I ++L +N L + S LK L LDLS N L+ + S L L L L N
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 62 SQGSIPKSFESLASLEFLDL 81
Q P+SF L++L +L L
Sbjct: 284 IQRLSPRSFYGLSNLRYLSL 303
>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map
Kinase Jnk1
Length = 370
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 183 TPYVVTRYYRAPEVILG 199
>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 371
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 127 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 183
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 184 TPYVVTRYYRAPEVILG 200
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLE--RAFRSFDSKCEVHKNVRHRNX---XXXX 215
+G+ S G+VYK + +VA+K+ N+ + ++F ++ V + RH N
Sbjct: 16 IGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 216 XXXXXXXXXPWYLSSCVMPNGDFPER-------LNIMIDMALAFEYLHHGRSTPMVHCDL 268
W S + + E ++I A +YLH + ++H DL
Sbjct: 74 TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 130
Query: 269 KPSNNLLDEDMVAHVSDFNISKL 291
K +N L ED+ + DF ++ +
Sbjct: 131 KSNNIFLHEDLTVKIGDFGLATV 153
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 17/141 (12%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLE--RAFRSFDSKCEVHKNVRHRNX---XXXX 215
+G+ S G+VYK + +VA+K+ N+ + ++F ++ V + RH N
Sbjct: 16 IGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 216 XXXXXXXXXPWYLSSCVMPNGDFPER-------LNIMIDMALAFEYLHHGRSTPMVHCDL 268
W S + + E ++I A +YLH + ++H DL
Sbjct: 74 TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 130
Query: 269 KPSNNLLDEDMVAHVSDFNIS 289
K +N L ED+ + DF ++
Sbjct: 131 KSNNIFLHEDLTVKIGDFGLA 151
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 31/166 (18%)
Query: 151 ATDEFNEWHLLGTESLGSVYKWIFL-DETNVAIKVFNL-------QLERAFRSFDSKCEV 202
A +E +G G V+K + D++ VAIK L ++ F+ F + +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 203 HKNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNGDFPERL-------------NIMIDMA 249
N+ H N P + +P GD RL +M+D+A
Sbjct: 77 MSNLNHPNIVKLYGLMHN----PPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIA 132
Query: 250 LAFEYLHHGRSTPMVHCDLKPSN---NLLDED--MVAHVSDFNISK 290
L EY+ + ++ P+VH DL+ N LDE+ + A V+DF S+
Sbjct: 133 LGIEYMQN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTSQ 177
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 17/141 (12%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLE--RAFRSFDSKCEVHKNVRHRNX---XXXX 215
+G+ S G+VYK + +VA+K+ N+ + ++F ++ V + RH N
Sbjct: 36 IGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 93
Query: 216 XXXXXXXXXPWYLSSCVMPNGDFPER-------LNIMIDMALAFEYLHHGRSTPMVHCDL 268
W S + + E ++I A +YLH + ++H DL
Sbjct: 94 TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 150
Query: 269 KPSNNLLDEDMVAHVSDFNIS 289
K +N L ED+ + DF ++
Sbjct: 151 KSNNIFLHEDLTVKIGDFGLA 171
>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774
Length = 355
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 183 TPYVVTRYYRAPEVILG 199
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLE--RAFRSFDSKCEVHKNVRHRNX---XXXX 215
+G+ S G+VYK + +VA+K+ N+ + ++F ++ V + RH N
Sbjct: 43 IGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 100
Query: 216 XXXXXXXXXPWYLSSCVMPNGDFPER-------LNIMIDMALAFEYLHHGRSTPMVHCDL 268
W S + + E ++I A +YLH + ++H DL
Sbjct: 101 TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 157
Query: 269 KPSNNLLDEDMVAHVSDFNISKL 291
K +N L ED+ + DF ++ +
Sbjct: 158 KSNNIFLHEDLTVKIGDFGLATV 180
>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine
Inhibitor
Length = 369
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 131 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 187
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 188 TPYVVTRYYRAPEVILG 204
>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With
Mgamp-Pnp
Length = 423
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 164 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 220
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 221 TPYVVTRYYRAPEVILG 237
>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 183 TPYVVTRYYRAPEVILG 199
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 239 PERLNIMIDMAL-AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG 293
P + + M L EYLH ++H DLKP+N LLDE+ V ++DF ++K G
Sbjct: 111 PSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSFG 163
>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 183 TPYVVTRYYRAPEVILG 199
>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
pdb|1UKI|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
Length = 369
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 183 TPYVVTRYYRAPEVILG 199
>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Jnj- 7706621
pdb|3AMB|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Vx- 680
Length = 351
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 151 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIKVADFGFAK 190
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 10/147 (6%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITI-SGLKDLTTLFLAGNRSQGS 65
+NL N L +L L L L+ N+L +P+ + L L L+L GN+ + S
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-S 121
Query: 66 IPKS-FESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFS 124
+P F+ L L+ L L++N L + + L+NL+ L++S N+L+ +VP G F
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-----SVPHGAFD 176
Query: 125 SQSFISNYALCAHQ-DSKRTSYLDILQ 150
+ L +Q D R L + Q
Sbjct: 177 RLGKLQTITLFGNQFDCSRCETLYLSQ 203
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 6 QINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGS 65
+++L S L+ + + L L L+L N+L L +L TL LA N+ S
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LAS 97
Query: 66 IP-KSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFS 124
+P F+ L L+ L L N L + L+ LKEL ++ N+L+ ++P G F
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-----SIPAGAFD 152
Query: 125 SQSFISNYALCAHQ 138
+ + +L +Q
Sbjct: 153 KLTNLQTLSLSTNQ 166
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
A EY H + +VH DLKP N LLDE + ++DF +S ++
Sbjct: 124 AVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNIM 162
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 46 ISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNV 105
I L L L ++ NR Q F+ LE+LDLS N L + S NLK L++
Sbjct: 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL---VKISCHPTVNLKHLDL 97
Query: 106 SYNRLEGEIPTNVPFGNFSSQSFI 129
S+N + +P FGN S F+
Sbjct: 98 SFNAFDA-LPICKEFGNMSQLKFL 120
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 25 LKVLIGLDLSINRL-YGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSS 83
+K L LD+S N + Y + S K L +L ++ N +I + ++ LDL S
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHS 430
Query: 84 NNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNF 123
N + IPK + L L+ELNV+ N+L+ VP G F
Sbjct: 431 NKIKS-IPKQVVKLEALQELNVASNQLKS-----VPDGIF 464
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
A EY H + +VH DLKP N LLDE + ++DF +S ++
Sbjct: 125 AVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNIM 163
>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 183 TPYVVTRYYRAPEVILG 199
>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
pdb|2R9S|B Chain B, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
Length = 356
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 119 ERMSYLLYQMLXGIKHLH---SAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMM 175
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 176 TPYVVTRYYRAPEVILG 192
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N L+D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIKVADFGFAK 189
>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737
Length = 364
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLXGIKHLH---SAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 183 TPYVVTRYYRAPEVILG 199
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
A EY H + +VH DLKP N LLDE + ++DF +S ++
Sbjct: 115 AVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNIM 153
>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562
Length = 364
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLXGIKHLH---SAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 183 TPYVVTRYYRAPEVILG 199
>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious
Tri-Substituted Thiophene Based Jnk Inhibitor
Length = 363
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 183 TPYVVTRYYRAPEVILG 199
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 10/147 (6%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITI-SGLKDLTTLFLAGNRSQGS 65
+NL N L +L L L L+ N+L +P+ + L L L+L GN+ + S
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-S 121
Query: 66 IPKS-FESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFS 124
+P F+ L L+ L L++N L + + L+NL+ L++S N+L+ +VP G F
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-----SVPHGAFD 176
Query: 125 SQSFISNYALCAHQ-DSKRTSYLDILQ 150
+ L +Q D R L + Q
Sbjct: 177 RLGKLQTITLFGNQFDCSRCEILYLSQ 203
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 6 QINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGS 65
+++L S L+ + + L L L+L N+L L +L TL LA N+ S
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LAS 97
Query: 66 IPKS-FESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFS 124
+P F+ L L+ L L N L + L+ LKEL ++ N+L+ ++P G F
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-----SIPAGAFD 152
Query: 125 SQSFISNYALCAHQ 138
+ + +L +Q
Sbjct: 153 KLTNLQTLSLSTNQ 166
>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor
Length = 358
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 120 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 176
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 177 TPYVVTRYYRAPEVILG 193
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 84
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ M G DF + RL ++DMA + + VH DL+
Sbjct: 85 E---PIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 141
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 142 AANILVGENLVCKVADFGLARLI 164
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
A EY H + +VH DLKP N LLDE + ++DF +S ++
Sbjct: 119 AVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNIM 157
>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide
pdb|4H39|A Chain A, Crystal Structure Of Jnk3 In Complex With Jip1 Peptide
pdb|4H3B|A Chain A, Crystal Structure Of Jnk3 In Complex With Sab Peptide
pdb|4H3B|C Chain C, Crystal Structure Of Jnk3 In Complex With Sab Peptide
Length = 356
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 120 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 176
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 177 TPYVVTRYYRAPEVILG 193
>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMQ|A Chain A, The Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMU|A Chain A, The Crystal Structure Of Jnk3 In Complex With A
Phenantroline Inhibitor
pdb|1PMV|A Chain A, The Structure Of Jnk3 In Complex With A
Dihydroanthrapyrazole Inhibitor
Length = 364
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 127 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 183
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 184 TPYVVTRYYRAPEVILG 200
>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And
Thiazole Based Inhibitors Of Jnk For The Treatment Of
Neurodegenerative Diseases
pdb|3OY1|A Chain A, Highly Selective C-Jun N-Terminal Kinase (Jnk) 2 And 3
Inhibitors With In Vitro Cns-Like Pharmacokinetic
Properties
Length = 362
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 125 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 181
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 182 TPYVVTRYYRAPEVILG 198
>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2P33|A Chain A, Synthesis And Sar Of Aminopyrimidines As Novel C-Jun N-
Terminal Kinase (Jnk) Inhibitors
pdb|3CGF|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3CGO|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3G90|X Chain X, Jnk-3 Bound To
(Z)-5-Fluoro-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)
Methyl)-3-(Hydroxyimino)indolin-2-One
pdb|3G9N|A Chain A, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Phenylindolin-2-One
pdb|3G9L|X Chain X, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Styrylindolin-2-One
Length = 365
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 127 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 183
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 184 TPYVVTRYYRAPEVILG 200
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 17 SLPSNIQNLKVLIGLDLSINRL----YGDIPITISGLKDLTTLFLAGNRSQGSIPKSFES 72
S+PS + + LDLS N++ +GD+ +L L L +R +F S
Sbjct: 45 SIPSGLT--AAMKSLDLSFNKITYIGHGDL----RACANLQVLILKSSRINTIEGDAFYS 98
Query: 73 LASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYN 108
L SLE LDLS N+LS LS+LK LN+ N
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3
Length = 355
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 119 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 175
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 176 TPYVVTRYYRAPEVILG 192
>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3
Length = 356
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 120 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 176
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 177 TPYVVTRYYRAPEVILG 193
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 18 LPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSI-PKSFESLASL 76
LPS + L L L LS N+ I+ S LT L + GN + + E+L +L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
Query: 77 EFLDLSSNNL--SGKIPKSLEALSNLKELNVSYNR 109
LDLS +++ S L LS+L+ LN+SYN
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 20 SNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNR-SQGSIPK--SFESLASL 76
S QNL +L L+LS + L GL L L L GN +G+I K S ++L L
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478
Query: 77 EFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRL 110
E L LS +LS + +L + +++S+NRL
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
Length = 350
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N ++D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLIIDQQGYIQVTDFGFAK 189
>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-{3-Cyano-6-[3-(1-
Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2,
3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide
pdb|2O2U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Cyano-4,5,6,7-
Tetrahydro-1-Benzothien-2-Yl)-2-Fluorobenzamide
pdb|2ZDT|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|2ZDU|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|3DA6|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Methyl-
4-(3-(2-(Methylamino)pyrimidin-4-Yl)pyridin-2-Yloxy)
Naphthalen-1-Yl)-1h-Benzo[d]imidazol-2-Amine
pdb|2WAJ|A Chain A, Crystal Structure Of Human Jnk3 Complexed With A
1-Aryl-3,4- Dihydroisoquinoline Inhibitor
pdb|3V6R|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6R|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
Length = 364
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ G ++
Sbjct: 126 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 183 TPYVVTRYYRAPEVILG 199
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 84
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ M G DF + RL ++DMA + + VH DL+
Sbjct: 85 E---PIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 141
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 142 AANILVGENLVCKVADFGLARLI 164
>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp
pdb|1Q62|A Chain A, Pka Double Mutant Model Of Pkb
Length = 350
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N ++D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLMIDQQGYIQVTDFGFAK 189
>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent
Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In
Complex With Sto-609
Length = 298
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
D+ EYLH+ + ++H D+KPSN L+ ED ++DF +S
Sbjct: 145 DLIKGIEYLHYQK---IIHRDIKPSNLLVGEDGHIKIADFGVS 184
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 84
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ M G DF + RL ++DMA + + VH DL+
Sbjct: 85 E---PIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 141
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 142 AANILVGENLVCKVADFGLARLI 164
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N ++D+ V+DF ++K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLMIDQQGYIKVTDFGLAK 189
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY ++ + VA+K + F + V K ++H N
Sbjct: 38 HKLGGGQYGEVYVGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 96
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + MP G+ + L +++ MA A EYL
Sbjct: 97 CTLEP--PFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISSAMEYLEKKN---F 151
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ V V+DF +S+L+
Sbjct: 152 IHRDLAARNCLVGENHVVKVADFGLSRLM 180
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 17 SLPSNI-QNLKVLIGLDLSINRLYGDIPITI-SGLKDLTTLFLAGNRSQGSIPKSFESLA 74
+LP+ I + LK L L ++ N+L +PI + L +L L L N+ + P+ F+SL
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 75 SLEFLDLSSNNLSGKIPKSL-EALSNLKELNVSYNRLEGEIPTNVPFGNFSSQSFISNYA 133
L +L L N L +PK + + L++LKEL + N+L+ VP G F + +
Sbjct: 134 KLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLK-----RVPEGAFDKLTELKTLK 187
Query: 134 LCAHQ 138
L +Q
Sbjct: 188 LDNNQ 192
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 17 SLPSNIQNLKVLIGLDLSINRL----YGDIPITISGLKDLTTLFLAGNRSQGSIPKSFES 72
S+PS + + LDLS N++ +GD+ +L L L +R +F S
Sbjct: 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDL----RACANLQVLILKSSRINTIEGDAFYS 72
Query: 73 LASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYN 108
L SLE LDLS N+LS LS+LK LN+ N
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment
pdb|3H4J|A Chain A, Crystal Structure Of Pombe Ampk Kdaid Fragment
Length = 336
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
A EY H + +VH DLKP N LLD+++ ++DF +S ++
Sbjct: 120 AIEYCHRHK---IVHRDLKPENLLLDDNLNVKIADFGLSNIM 158
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 235 NGDFPER----LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
G PER + + I AL + HG ++H D+KPSN LLDE + DF IS
Sbjct: 118 QGPIPERILGKMTVAIVKALYYLKEKHG----VIHRDVKPSNILLDERGQIKLCDFGISG 173
Query: 291 LL 292
L
Sbjct: 174 RL 175
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 81
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ + M G DF + RL ++DM+ + + VH DL+
Sbjct: 82 E---PIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRDLR 138
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 139 AANILVGENLVCKVADFGLARLI 161
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 16 GSLPSNI-QNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKS-FESL 73
S+P+ I N ++L D I +L P L +L L+L N+ G++P F+SL
Sbjct: 32 ASVPAGIPTNAQILYLHDNQITKLE---PGVFDSLINLKELYLGSNQ-LGALPVGVFDSL 87
Query: 74 ASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNV 118
L LDL +N L+ + L +LKEL + N+L E+P +
Sbjct: 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI 131
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 81
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P Y+ + M G DF + RL ++DM+ + + VH DL+
Sbjct: 82 E---PIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRDLR 138
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 139 AANILVGENLVCKVADFGLARLI 161
>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9M|B Chain B, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9N|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 27
Length = 351
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N ++D+ V+DF +K
Sbjct: 151 IVLTFEYLH---SLDLIYRDLKPENLMIDQQGYIKVTDFGFAK 190
>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
pdb|1SZM|B Chain B, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
Length = 350
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N ++D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLMIDQQGYIKVTDFGFAK 189
>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDV|A Chain A, Structure Of Pka-Pkb Chimera Complexed With A-443654
pdb|2UVX|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 7-Azaindole
pdb|2UW4|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
2-(4-(5-Methyl- 1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW7|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|4AXA|A Chain A, Structure Of Pka-pkb Chimera Complexed With
(1s)-2-amino-1-(
4-chlorophenyl)-1-(4-(1h-pyrazol-4-yl)phenyl)ethan-1-ol
Length = 351
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N ++D+ V+DF +K
Sbjct: 151 IVLTFEYLH---SLDLIYRDLKPENLMIDQQGYIKVTDFGFAK 190
>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb
Length = 350
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N ++D+ V+DF +K
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLMIDQQGYIKVTDFGFAK 189
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ LA EYLH S +++ DLKP N LLD++ ++DF +K +
Sbjct: 114 EVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYV 156
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 1 LEYILQINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGN 60
L +++++ L N L+G P+ + + L L N++ GL L TL L N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 61 RSQGSIPKSFESLASLEFLDLSSN 84
+ +P SFE L SL L+L+SN
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASN 136
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 33 LSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPK 92
+S + L+G +P L L L N+ G P +FE + ++ L L N + K
Sbjct: 44 ISSDGLFGRLP-------HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 93 SLEALSNLKELNVSYNRLEGEIP 115
L LK LN+ N++ +P
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMP 119
>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
Length = 351
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N ++D+ V+DF +K
Sbjct: 151 IVLTFEYLH---SLDLIYRDLKPENLMIDQQGYIKVTDFGFAK 190
>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h-
Purin-6-yl)-benzyl)-amine
pdb|2UVZ|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
C-Phenyl-C-(4-( 9h-Purin-6-Yl)-Phenyl)-Methylamine
pdb|2UW0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 6-(4-(4-(4-
Chloro-Phenyl)-Piperidin-4-Yl)-Phenyl)-9h-Purine
pdb|2UW3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 5-Methyl-4-
Phenyl-1h-Pyrazole
pdb|2UW5|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (R)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (S)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW8|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 2-(4-Chloro-
Phenyl)-2-Phenyl-Ethylamine
pdb|2VNW|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)methanamine
pdb|2VNY|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)amine
pdb|2VO3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
pdb|2VO6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-
Chlorobenzyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Ylamine
Length = 351
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ L FEYLH S +++ DLKP N ++D+ V+DF +K
Sbjct: 151 IVLTFEYLH---SLDLIYRDLKPENLMIDQQGYIKVTDFGFAK 190
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 2 EYILQINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNR 61
+++ ++ L NSL+ LP+ I+NL L LDLS NRL +P + L + N
Sbjct: 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNM 304
Query: 62 SQGSIPKSFESLASLEFLDLSSNNLSGKIPKSL 94
++P F +L +L+FL + N L + K L
Sbjct: 305 VT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
L +D+ A EYL VH DL N L+ ED VA VSDF ++K
Sbjct: 120 LKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTK 165
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
L +D+ A EYL VH DL N L+ ED VA VSDF ++K
Sbjct: 292 LKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTK 337
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
L +D+ A EYL VH DL N L+ ED VA VSDF ++K
Sbjct: 111 LKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTK 156
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
L +D+ A EYL VH DL N L+ ED VA VSDF ++K
Sbjct: 105 LKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTK 150
>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|B Chain B, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|C Chain C, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|D Chain D, Structure Of Human Phosphorylase Kinase, Gamma 2
Length = 365
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 240 ERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
E +IM + A +LH + +VH DLKP N LLD++M +SDF S
Sbjct: 201 ETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIRLSDFGFS 247
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 19 PSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEF 78
P + L L L L N L T L +LT LFL GNR ++F L SL+
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 79 LDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNV 118
L L N ++ P + L L L + N L +PT
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEA 219
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%)
Query: 9 LFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPK 68
L N+L ++L L L L NR+ GL L L L NR P
Sbjct: 135 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 194
Query: 69 SFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYN 108
+F L L L L +NNLS ++L L L+ L ++ N
Sbjct: 195 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 19 PSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEF 78
P + L L L L N L T L +LT LFL GNR ++F L SL+
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 79 LDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNV 118
L L N ++ P + L L L + N L +PT
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEA 220
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%)
Query: 9 LFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPK 68
L N+L ++L L L L NR+ GL L L L NR P
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 69 SFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYN 108
+F L L L L +NNLS ++L L L+ L ++ N
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 17/141 (12%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLE--RAFRSFDSKCEVHKNVRHRNX---XXXX 215
+G+ S G+VYK + +VA+K+ N+ + ++F ++ V + RH N
Sbjct: 32 IGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89
Query: 216 XXXXXXXXXPWYLSSCVM-------PNGDFPERLNIMIDMALAFEYLHHGRSTPMVHCDL 268
W S + + + ++I A +YLH + ++H DL
Sbjct: 90 TKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDL 146
Query: 269 KPSNNLLDEDMVAHVSDFNIS 289
K +N L ED + DF ++
Sbjct: 147 KSNNIFLHEDNTVKIGDFGLA 167
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 245 MIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ ++AL ++LH S +++ DLKP N LLDE+ ++DF +SK
Sbjct: 136 LAELALGLDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSK 178
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLE--RAFRSFDSKCEVHKNVRHRNX---XXXX 215
+G+ S G+VYK + +VA+K+ N+ + ++F ++ V + RH N
Sbjct: 20 IGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 77
Query: 216 XXXXXXXXXPWYLSSCVM-------PNGDFPERLNIMIDMALAFEYLHHGRSTPMVHCDL 268
W S + + + ++I A +YLH + ++H DL
Sbjct: 78 TKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDL 134
Query: 269 KPSNNLLDEDMVAHVSDFNISKL 291
K +N L ED + DF ++ +
Sbjct: 135 KSNNIFLHEDNTVKIGDFGLATV 157
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 17/141 (12%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLE--RAFRSFDSKCEVHKNVRHRNX---XXXX 215
+G+ S G+VYK + +VA+K+ N+ + ++F ++ V + RH N
Sbjct: 32 IGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89
Query: 216 XXXXXXXXXPWYLSSCVM-------PNGDFPERLNIMIDMALAFEYLHHGRSTPMVHCDL 268
W S + + + ++I A +YLH + ++H DL
Sbjct: 90 TAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDL 146
Query: 269 KPSNNLLDEDMVAHVSDFNIS 289
K +N L ED + DF ++
Sbjct: 147 KSNNIFLHEDNTVKIGDFGLA 167
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 41 DIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNL 100
DIP ++ L L L L+GNR P SF+ L SL L L ++ + + L +L
Sbjct: 170 DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSL 228
Query: 101 KELNVSYNRL 110
+ELN+S+N L
Sbjct: 229 EELNLSHNNL 238
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 21 NIQNLKVLIGLD---LSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLE 77
+I NL L+ L+ LS NRL P + GL L L+L + +F+ L SLE
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 78 FLDLSSNNLSGKIPKSLEALSNLKELNVSYN 108
L+LS NNL L L+ +++++N
Sbjct: 230 ELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 4 ILQINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDI-PITISGLKDLTTLFLAGNRS 62
ILQ N N +L + +N+ L LD+S+N L T + + + L L+ N
Sbjct: 383 ILQRNGLKNFFKVALMT--KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440
Query: 63 QGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGN 122
GS+ + ++ LDL +N + IPK + L L+ELNV+ N+L+ +P V F
Sbjct: 441 TGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGV-FDR 495
Query: 123 FSSQSFI 129
+S +I
Sbjct: 496 LTSLQYI 502
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 2 EYILQINLFSNSLSGS----LPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFL 57
E IL +NL SN L+GS LP ++ LDL NR+ IP ++ L+ L L +
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPKVK------VLDLHNNRIMS-IPKDVTHLQALQELNV 480
Query: 58 AGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIP 91
A N+ + F+ L SL+++ L N P
Sbjct: 481 ASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
A +Y H R +VH DLK N LLD DM ++DF S
Sbjct: 123 AVQYCHQKR---IVHRDLKAENLLLDADMNIKIADFGFS 158
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
A +Y H R +VH DLK N LLD DM ++DF S
Sbjct: 126 AVQYCHQKR---IVHRDLKAENLLLDADMNIKIADFGFS 161
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 41 DIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNL 100
DIP ++ L L L L+GNR P SF+ L SL L L ++ + + L +L
Sbjct: 170 DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSL 228
Query: 101 KELNVSYNRL 110
+ELN+S+N L
Sbjct: 229 EELNLSHNNL 238
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 21 NIQNLKVLIGLD---LSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLE 77
+I NL L+ L+ LS NRL P + GL L L+L + +F+ L SLE
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 78 FLDLSSNNLSGKIPKSLEALSNLKELNVSYN 108
L+LS NNL L L+ +++++N
Sbjct: 230 ELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 25 LKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNR-SQGSIPKSFESLASLEFLDLSS 83
L+ L+ LD+S D GL L TL +AGN ++ F + +L FLDLS
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482
Query: 84 NNLSGKIPKSLEALSNLKELNVSYNRL 110
L + L L+ LN+S+N L
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNL 509
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 48 GLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSY 107
GL L+ L L GN Q P SF L SLE L L+ + L LK+LNV++
Sbjct: 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137
Query: 108 N 108
N
Sbjct: 138 N 138
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 25 LKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNR-SQGSIPKSFESLASLEFLDLSS 83
L+ L+ LD+S D GL L TL +AGN ++ F + +L FLDLS
Sbjct: 418 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 477
Query: 84 NNLSGKIPKSLEALSNLKELNVSYNRL 110
L + L L+ LN+S+N L
Sbjct: 478 CQLEQISWGVFDTLHRLQLLNMSHNNL 504
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 48 GLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSY 107
GL L+ L L GN Q P SF L SLE L L+ + L LK+LNV++
Sbjct: 73 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 132
Query: 108 N 108
N
Sbjct: 133 N 133
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + +F + +V K +RH
Sbjct: 16 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 74
Query: 221 XXXXPWYLSSCVMPNG---DFPE-------RLNIMIDMALAFEY-LHHGRSTPMVHCDLK 269
P + + M G DF + RL ++DMA + + VH DL+
Sbjct: 75 E---PIXIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 131
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ E++V V+DF +++L+
Sbjct: 132 AANILVGENLVCKVADFGLARLI 154
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 2 EYILQINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNR 61
E I +I L N++ P K L +DLS N++ P GL+ L +L L GN+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 62 SQGSIPKS-FESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLE 111
+PKS FE L SL+ L L++N ++ + + L NL L++ N+L+
Sbjct: 92 IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
A +Y H +VH DLKP N LLD M A ++DF +S ++
Sbjct: 123 AVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMM 161
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
A +Y H +VH DLKP N LLD M A ++DF +S ++
Sbjct: 123 AVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMM 161
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 2 EYILQINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNR 61
E I +I L N++ P K L +DLS N++ P GL+ L +L L GN+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 62 SQGSIPKS-FESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLE 111
+PKS FE L SL+ L L++N ++ + + L NL L++ N+L+
Sbjct: 92 IT-ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQ 141
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGVLLPETFT 301
L+ D+A +YL + +H DL N L+ E+ VA ++DF +S+ V + +T
Sbjct: 145 LHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMG 201
Query: 302 R 302
R
Sbjct: 202 R 202
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 48 GLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSY 107
GL L L L+ N + FE+L LE LDLS N++ +S L NLKEL +
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 108 NRLEGEIPTNVPFGNF 123
N+L+ +VP G F
Sbjct: 381 NQLK-----SVPDGIF 391
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 1 LEYILQINLFSNSLSGSLPSNI-QNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAG 59
L ++L++NL N L GS+ S + +NL L LDLS N + + GL +L L L
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 60 NRSQGSIPKS-FESLASLEFLDLSSNNLSGKIPK 92
N+ + S+P F+ L SL+ + L +N P+
Sbjct: 381 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGVLLPETFT 301
L+ D+A +YL + +H DL N L+ E+ VA ++DF +S+ V + +T
Sbjct: 135 LHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMG 191
Query: 302 R 302
R
Sbjct: 192 R 192
>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2
pdb|3E7O|B Chain B, Crystal Structure Of Jnk2
Length = 360
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ ++
Sbjct: 124 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTASTNFMM 180
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 181 TPYVVTRYYRAPEVILG 197
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 263 MVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+VH DLKP N LLD M A ++DF +S ++
Sbjct: 137 VVHRDLKPENVLLDAHMNAKIADFGLSNMM 166
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 49 LKDLTTLFLAGNRSQGSIPKS-FESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSY 107
L +LT L+L N+ Q S+PK F+ L +L LDL +N L + L+ LK+L+++
Sbjct: 132 LTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND 190
Query: 108 NRLEGEIPTNVPFGNF 123
N+L+ +VP G F
Sbjct: 191 NQLK-----SVPDGVF 201
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 46 ISGLKDLTTL---FLAGNRSQGSIPKS-FESLASLEFLDLSSNNLSGKIPKSLEALSNLK 101
IS LK+LT L L GN+ Q S+P F+ L +L+ L L N L + L+NL
Sbjct: 78 ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 102 ELNVSYNRLE 111
L + +N+L+
Sbjct: 137 YLYLYHNQLQ 146
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 15/142 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAI-KVFNLQLERAFRSFDSKCEVHKNVRHRNX---XXXXX 216
+G+ S G+VYK + + V I KV + E+ F++F ++ V + RH N
Sbjct: 44 IGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQ-FQAFRNEVAVLRKTRHVNILLFMGYMT 102
Query: 217 XXXXXXXXPWYLSSCVMPNGDFPER-------LNIMIDMALAFEYLHHGRSTPMVHCDLK 269
W S + + E ++I A +YLH + ++H D+K
Sbjct: 103 KDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMK 159
Query: 270 PSNNLLDEDMVAHVSDFNISKL 291
+N L E + + DF ++ +
Sbjct: 160 SNNIFLHEGLTVKIGDFGLATV 181
>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796
pdb|3NPC|B Chain B, Crystal Structure Of Jnk2 Complexed With Birb796
Length = 364
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG---VL 295
ER++ ++ M ++LH S ++H DLKPSN ++ D + DF +++ ++
Sbjct: 126 ERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMM 182
Query: 296 LPETFTRKKPTIEMIIG 312
P TR E+I+G
Sbjct: 183 TPYVVTRYYRAPEVILG 199
>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With
Nms-P937
pdb|4A4L|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
5-(2-Amino-Pyrimidin-4-Yl)-1h-Pyrrole Inhibitor
pdb|4A4O|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
2-
(2-Amino-Pyrimidin-4-Yl)-1,5,6,
7-Tetrahydro-Pyrrolopyridin- 4-One Inhibitor
Length = 311
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 239 PERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
PE + + L +YLH R ++H DLK N L+ED+ + DF ++
Sbjct: 117 PEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA 164
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Query: 139 DSKRTSYLDILQATDEFNEWHLLGTESLGSVYKWIFLDE-TNVAIKVFNLQLE-----RA 192
++ + L IL+ T EF + +LG+ + G+VYK +++ E V I V ++L +A
Sbjct: 36 EAPNQALLRILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREATSPKA 94
Query: 193 FRSFDSKCEVHKNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPER-------- 241
+ + V +V + + L + +MP G D+
Sbjct: 95 NKEILDEAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQ 151
Query: 242 --LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 152 YLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 203
>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|B Chain B, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 315
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 239 PERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
PE + + L +YLH R ++H DLK N L+ED+ + DF ++
Sbjct: 121 PEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA 168
>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 311
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 239 PERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
PE + + L +YLH R ++H DLK N L+ED+ + DF ++
Sbjct: 117 PEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA 164
>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536
Length = 294
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 239 PERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
PE + + L +YLH R ++H DLK N L+ED+ + DF ++
Sbjct: 115 PEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA 162
>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|2OWB|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|3FC2|A Chain A, Plk1 In Complex With Bi6727
Length = 335
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 239 PERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
PE + + L +YLH R ++H DLK N L+ED+ + DF ++
Sbjct: 141 PEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA 188
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNL---LDEDMVAHVSDFNISKL 291
A +YLH +VH DLKP N L LDED +SDF +SK+
Sbjct: 128 AVKYLH---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKM 168
>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A
Benzolactam-Derived Inhibitor
Length = 333
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 239 PERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
PE + + L +YLH R ++H DLK N L+ED+ + DF ++
Sbjct: 139 PEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA 186
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNL---LDEDMVAHVSDFNISKL 291
A +YLH +VH DLKP N L LDED +SDF +SK+
Sbjct: 128 AVKYLH---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKM 168
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%)
Query: 33 LSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPK 92
L+ NRL GL+ L TL L NR SF L+S+ L L N ++ P
Sbjct: 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147
Query: 93 SLEALSNLKELNVSYN 108
+ + L +L LN+ N
Sbjct: 148 AFDTLHSLSTLNLLAN 163
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNL---LDEDMVAHVSDFNISKL 291
A +YLH +VH DLKP N L LDED +SDF +SK+
Sbjct: 128 AVKYLH---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKM 168
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNL---LDEDMVAHVSDFNISKL 291
A +YLH +VH DLKP N L LDED +SDF +SK+
Sbjct: 128 AVKYLH---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKM 168
>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide
Substrate Complex: Kinase Substrate Recognition
Length = 277
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 263 MVHCDLKPSNNLLDEDMVAHVSDFNIS 289
+VH DLKP N LLD+DM ++DF S
Sbjct: 132 IVHRDLKPENILLDDDMNIKLTDFGFS 158
>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase,
Kinase: An Active Protein Kinase Complexed With
Nucleotide, Substrate-Analogue And Product
Length = 298
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 263 MVHCDLKPSNNLLDEDMVAHVSDFNIS 289
+VH DLKP N LLD+DM ++DF S
Sbjct: 145 IVHRDLKPENILLDDDMNIKLTDFGFS 171
>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By
Mutational Studies
Length = 298
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 263 MVHCDLKPSNNLLDEDMVAHVSDFNIS 289
+VH DLKP N LLD+DM ++DF S
Sbjct: 145 IVHRDLKPENILLDDDMNIKLTDFGFS 171
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 246 IDMALAF-----EYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+D A+ F + + H +VH D+KP N L+D + + DF I+K L
Sbjct: 110 VDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKAL 161
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 17 HKLGGGQFGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 75
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 76 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---F 130
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 131 IHRDLAARNCLVGENHLVKVADFGLSRLM 159
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 243 NIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG 293
I+ ++ EYLH +H D+K N LL ED ++DF +S L
Sbjct: 125 TILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLA 172
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 243 NIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG 293
I+ ++ EYLH +H D+K N LL ED ++DF +S L
Sbjct: 120 TILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLA 167
>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii,
25.M01780 Or Tgme49_007820
Length = 458
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 244 IMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
++ ++ + +Y+H S ++H DLKP+N L+++D V DF +++ +
Sbjct: 161 LLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLARTV 206
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 48 GLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSY 107
L L+TL L GN Q +F L+SL+ L NL+ + L LKELNV++
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 108 NRLEG 112
N ++
Sbjct: 134 NLIQS 138
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 20 SNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQG-SIPKSFESLASLEF 78
S + +L+ L+ ++ ++ L I LK L L +A N Q +P+ F +L +LE
Sbjct: 97 SGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 79 LDLSSNNLSGKIPKSLEALSNL 100
LDLSSN + L L +
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 49 LKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYN 108
L L+TL L GN Q +F L+SL+ L NL+ + L LKELNV++N
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 109 RLE 111
++
Sbjct: 136 LIQ 138
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 20 SNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQG-SIPKSFESLASLEF 78
S + +L+ L+ ++ ++ L I LK L L +A N Q +P+ F +L +LE
Sbjct: 98 SGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 154
Query: 79 LDLSSNNLSGKIPKSLEALSNL 100
LDLSSN + L L +
Sbjct: 155 LDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147
pdb|3NIE|B Chain B, Crystal Structure Of Pf11_0147
Length = 429
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 244 IMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG 293
I+ ++ L +++H + ++H DLKP+N LL++D + DF +++ +
Sbjct: 136 ILYNLLLGEKFIH---ESGIIHRDLKPANCLLNQDCSVKICDFGLARTIN 182
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 49 LKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYN 108
L L+TL L GN Q +F L+SL+ L NL+ + L LKELNV++N
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 136
Query: 109 RLE 111
++
Sbjct: 137 LIQ 139
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 20 SNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQG-SIPKSFESLASLEF 78
S + +L+ L+ ++ ++ L I LK L L +A N Q +P+ F +L +LE
Sbjct: 99 SGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 155
Query: 79 LDLSSNNLSGKIPKSLEALSNL 100
LDLSSN + L L +
Sbjct: 156 LDLSSNKIQSIYCTDLRVLHQM 177
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 20 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 78
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 79 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---F 133
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 134 IHRDLAARNCLVGENHLVKVADFGLSRLM 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 49 LKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYN 108
L L+TL L GN Q +F L+SL+ L NL+ + L LKELNV++N
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 109 RLE 111
++
Sbjct: 136 LIQ 138
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 20 SNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQG-SIPKSFESLASLEF 78
S + +L+ L+ ++ ++ L I LK L L +A N Q +P+ F +L +LE
Sbjct: 98 SGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 154
Query: 79 LDLSSNNLSGKIPKSLEALSNL 100
LDLSSN + L L +
Sbjct: 155 LDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
pdb|3N9X|B Chain B, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
Length = 432
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 244 IMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG 293
I+ ++ L ++H + ++H DLKP+N LL++D V DF +++ +
Sbjct: 134 ILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTIN 180
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 17 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 75
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 76 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---F 130
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 131 IHRDLAARNCLVGENHLVKVADFGLSRLM 159
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 244 IMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
++ + +YLH G ++H D+KPSN LL+ + V+DF +S+
Sbjct: 114 VVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSR 157
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L+D ++V VSDF +S++L
Sbjct: 173 VHRDLAARNVLVDSNLVCKVSDFGLSRVL 201
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 78 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---F 132
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 133 IHRDLAARNCLVGENHLVKVADFGLSRLM 161
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 24 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 82
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 83 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---F 137
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 138 IHRDLAARNCLVGENHLVKVADFGLSRLM 166
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 68 KSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFG 121
+ FE+L L+ L+L+ N ++ ++ L NL+ LN+SYN L GE+ ++ +G
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYG 336
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 48 GLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSY 107
GL L L+L N P F L +L L L+SN L+ L A NL+ L++S
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISR 535
Query: 108 NRLEGEIP 115
N+L P
Sbjct: 536 NQLLAPNP 543
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 12 NSLSGSLPSNIQNLKVLIGLDLSIN-RLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSF 70
N+ +G S++++L + G S+N R++ LKDL L LA N+ ++F
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVF-------ETLKDLKVLNLAYNKINKIADEAF 310
Query: 71 ESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRL 110
L +L+ L+LS N L + L + +++ N +
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 21 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 79
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 80 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---F 134
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 135 IHRDLAARNCLVGENHLVKVADFGLSRLM 163
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L+D ++V VSDF +S++L
Sbjct: 173 VHRDLAARNVLVDSNLVCKVSDFGLSRVL 201
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGVLLPETFT 301
L+ D+A +YL + +H +L N L+ E+ VA ++DF +S+ V + +T
Sbjct: 142 LHFAADVARGMDYLSQKQ---FIHRNLAARNILVGENYVAKIADFGLSRGQEVYVKKTMG 198
Query: 302 R 302
R
Sbjct: 199 R 199
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 78 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---F 132
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 133 IHRDLAARNCLVGENHLVKVADFGLSRLM 161
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 24 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 82
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 83 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---F 137
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 138 IHRDLAARNCLVGENHLVKVADFGLSRLM 166
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 32 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 90
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 91 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---F 145
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 146 IHRDLAARNCLVGENHLVKVADFGLSRLM 174
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 21 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 79
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 80 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---F 134
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 135 IHRDLAARNCLVGENHLVKVADFGLSRLM 163
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 240 ERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
E+L I +A YL + VH DL N L+ E+MV ++DF +S+
Sbjct: 175 EQLCIARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSR 222
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VA+K Q + +F ++ + K ++H+
Sbjct: 16 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 74
Query: 221 XXXXPWYLSSCVMPNG---DFPER-------LNIMIDMALAF-EYLHHGRSTPMVHCDLK 269
P Y+ + M NG DF + +N ++DMA E + +H DL+
Sbjct: 75 E---PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR 131
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ + + ++DF +++L+
Sbjct: 132 AANILVSDTLSCKIADFGLARLI 154
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 21 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 79
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 80 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---F 134
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 135 IHRDLAARNCLVGENHLVKVADFGLSRLM 163
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 23 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 81
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 82 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---F 136
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 137 IHRDLAARNCLVGENHLVKVADFGLSRLM 165
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 78 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---F 132
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 133 IHRDLAARNCLVGENHLVKVADFGLSRLM 161
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 24 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 82
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 83 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---F 137
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 138 IHRDLAARNCLVGENHLVKVADFGLSRLM 166
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 26/178 (14%)
Query: 136 AHQDSKRTSYLDILQATDEFNEWHLLGTESLGSVYKWIFLDE-TNVAIKVFNLQLE---- 190
A ++ + L IL+ T EF + +LG+ + G+VYK +++ E V I V +L
Sbjct: 5 ASGEAPNQALLRILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS 63
Query: 191 -RAFRSFDSKCEVHKNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPER----- 241
+A + + V +V + + L + +MP G D+
Sbjct: 64 PKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNI 120
Query: 242 -----LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 121 GSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 175
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
A Y+H S ++H DLKP N +DE + DF ++K
Sbjct: 128 ALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAK 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 49 LKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYN 108
L L+TL L GN Q +F L+SL+ L NL+ + L LKELNV++N
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHN 136
Query: 109 RLE 111
++
Sbjct: 137 LIQ 139
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 20 SNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQG-SIPKSFESLASLEF 78
S + +L+ L+ L+ ++ L I LK L L +A N Q +P+ F +L +LE
Sbjct: 99 SGLSSLQKLVALETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 155
Query: 79 LDLSSNNLSGKIPKSLEALSNL 100
LDLSSN + L L +
Sbjct: 156 LDLSSNKIQSIYCTDLRVLHQM 177
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 26/178 (14%)
Query: 136 AHQDSKRTSYLDILQATDEFNEWHLLGTESLGSVYKWIFLDE-TNVAIKVFNLQLE---- 190
A ++ + L IL+ T EF + +LG+ + G+VYK +++ E V I V +L
Sbjct: 2 AMGEAPNQALLRILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS 60
Query: 191 -RAFRSFDSKCEVHKNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPER----- 241
+A + + V +V + + L + +MP G D+
Sbjct: 61 PKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNI 117
Query: 242 -----LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 118 GSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 172
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
A Y+H S ++H DLKP N +DE + DF ++K
Sbjct: 128 ALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAK 164
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 24 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 82
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 83 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---F 137
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 138 IHRDLAARNCLVGENHLVKVADFGLSRLM 166
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 78 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---F 132
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 133 IHRDLAARNCLVGENHLVKVADFGLSRLM 161
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 242 LNIMIDMALAFEYLHH---GRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
L +M + LA + H G T ++H DLKP+N LD + DF ++++L
Sbjct: 114 LRVMTQLTLALKECHRRSDGGHT-VLHRDLKPANVFLDGKQNVKLGDFGLARIL 166
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 26/178 (14%)
Query: 136 AHQDSKRTSYLDILQATDEFNEWHLLGTESLGSVYKWIFLDE-TNVAIKVFNLQLE---- 190
A ++ + L IL+ T EF + +LG+ + G+VYK +++ E V I V +L
Sbjct: 2 AMGEAPNQALLRILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS 60
Query: 191 -RAFRSFDSKCEVHKNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPER----- 241
+A + + V +V + + L + +MP G D+
Sbjct: 61 PKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNI 117
Query: 242 -----LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 118 GSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 172
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 242 LNIMIDMALAFEYLHH---GRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
L +M + LA + H G T ++H DLKP+N LD + DF ++++L
Sbjct: 114 LRVMTQLTLALKECHRRSDGGHT-VLHRDLKPANVFLDGKQNVKLGDFGLARIL 166
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 37 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 96
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPERLNIMID----------MAL 250
K+++H N L +P G D+ ++ ID +
Sbjct: 97 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 156
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H DL N L++ + + DF ++K+L
Sbjct: 157 GMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 195
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 9 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 68
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPERLNIMID----------MAL 250
K+++H N L +P G D+ ++ ID +
Sbjct: 69 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 128
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H DL N L++ + + DF ++K+L
Sbjct: 129 GMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 167
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG 293
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 120 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 24 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 83
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPERLNIMID----------MAL 250
K+++H N L +P G D+ ++ ID +
Sbjct: 84 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 143
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H DL N L++ + + DF ++K+L
Sbjct: 144 GMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 182
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 242 LNIMIDMALAFEYLHH---GRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
L +M + LA + H G T ++H DLKP+N LD + DF ++++L
Sbjct: 114 LRVMTQLTLALKECHRRSDGGHT-VLHRDLKPANVFLDGKQNVKLGDFGLARIL 166
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 6 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 65
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPERLNIMID----------MAL 250
K+++H N L +P G D+ ++ ID +
Sbjct: 66 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 125
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H DL N L++ + + DF ++K+L
Sbjct: 126 GMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 164
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VA+K Q + +F ++ + K ++H+
Sbjct: 22 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 80
Query: 221 XXXXPWYLSSCVMPNG---DFPER-------LNIMIDMALAF-EYLHHGRSTPMVHCDLK 269
P Y+ + M NG DF + +N ++DMA E + +H DL+
Sbjct: 81 E---PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR 137
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ + + ++DF +++L+
Sbjct: 138 AANILVSDTLSCKIADFGLARLI 160
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 26/175 (14%)
Query: 139 DSKRTSYLDILQATDEFNEWHLLGTESLGSVYKWIFLDE-TNVAIKVFNLQLE-----RA 192
++ + L IL+ T EF + +LG+ + G+VYK +++ E V I V +L +A
Sbjct: 9 EAPNQALLRILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKA 67
Query: 193 FRSFDSKCEVHKNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPER-------- 241
+ + V +V + + L + +MP G D+
Sbjct: 68 NKEILDEAYVMASVDNPHVCRLLGICLTSTVQ---LITQLMPFGCLLDYVREHKDNIGSQ 124
Query: 242 --LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 125 YLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 176
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VA+K Q + +F ++ + K ++H+
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 85
Query: 221 XXXXPWYLSSCVMPNG---DFPER-------LNIMIDMALAF-EYLHHGRSTPMVHCDLK 269
P Y+ + M NG DF + +N ++DMA E + +H DL+
Sbjct: 86 E---PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR 142
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ + + ++DF +++L+
Sbjct: 143 AANILVSDTLSCKIADFGLARLI 165
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 13 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 72
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPERLNIMID----------MAL 250
K+++H N L +P G D+ ++ ID +
Sbjct: 73 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 132
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H DL N L++ + + DF ++K+L
Sbjct: 133 GMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 171
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 145 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 194
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 17 SLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASL 76
S+PS + + + LDLS NR+ + +L L L N SF SL SL
Sbjct: 45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 77 EFLDLSSNNLSGKIPKSLEALSNLKELNV 105
E LDLS N LS + LS+L LN+
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 127 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 176
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VA+K Q + +F ++ + K ++H+
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
Query: 221 XXXXPWYLSSCVMPNG---DFPER-------LNIMIDMALAF-EYLHHGRSTPMVHCDLK 269
P Y+ + M NG DF + +N ++DMA E + +H DL+
Sbjct: 80 E---PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR 136
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ + + ++DF +++L+
Sbjct: 137 AANILVSDTLSCKIADFGLARLI 159
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VA+K Q + +F ++ + K ++H+
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
Query: 221 XXXXPWYLSSCVMPNG---DFPER-------LNIMIDMALAF-EYLHHGRSTPMVHCDLK 269
P Y+ + M NG DF + +N ++DMA E + +H DL+
Sbjct: 80 E---PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR 136
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ + + ++DF +++L+
Sbjct: 137 AANILVSDTLSCKIADFGLARLI 159
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 11 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 70
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPERLNIMID----------MAL 250
K+++H N L +P G D+ ++ ID +
Sbjct: 71 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 130
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H DL N L++ + + DF ++K+L
Sbjct: 131 GMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 169
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 21 NIQNLKVLIGLD---LSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLE 77
++ NL L+GL+ +S N P + GL L L++ ++ +F+ LASL
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269
Query: 78 FLDLSSNNLSGKIPKSLEALSNLKELNVSYN 108
L+L+ NNLS L L EL++ +N
Sbjct: 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 18 LPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLE 77
+PSN + L ++ + +I + D T L L L L N + +F LASL
Sbjct: 73 IPSNTRYLNLM---ENNIQMIQAD---TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN 126
Query: 78 FLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPT 116
L+L N L+ + E LS L+EL + N +E IP+
Sbjct: 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPS 164
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VA+K Q + +F ++ + K ++H+
Sbjct: 29 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 87
Query: 221 XXXXPWYLSSCVMPNG---DFPER-------LNIMIDMALAF-EYLHHGRSTPMVHCDLK 269
P Y+ + M NG DF + +N ++DMA E + +H DL+
Sbjct: 88 E---PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR 144
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ + + ++DF +++L+
Sbjct: 145 AANILVSDTLSCKIADFGLARLI 167
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VA+K Q + +F ++ + K ++H+
Sbjct: 23 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 81
Query: 221 XXXXPWYLSSCVMPNG---DFPER-------LNIMIDMALAF-EYLHHGRSTPMVHCDLK 269
P Y+ + M NG DF + +N ++DMA E + +H DL+
Sbjct: 82 E---PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR 138
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ + + ++DF +++L+
Sbjct: 139 AANILVSDTLSCKIADFGLARLI 161
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 120 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VA+K Q + +F ++ + K ++H+
Sbjct: 26 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 84
Query: 221 XXXXPWYLSSCVMPNG---DFPER-------LNIMIDMALAF-EYLHHGRSTPMVHCDLK 269
P Y+ + M NG DF + +N ++DMA E + +H DL+
Sbjct: 85 E---PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR 141
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ + + ++DF +++L+
Sbjct: 142 AANILVSDTLSCKIADFGLARLI 164
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 122 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 171
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 130 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 179
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 12 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 71
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPERLNIMID----------MAL 250
K+++H N L +P G D+ ++ ID +
Sbjct: 72 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 131
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H DL N L++ + + DF ++K+L
Sbjct: 132 GMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 170
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 124 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 173
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 120 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 120 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 24 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 83
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPERLNIMID----------MAL 250
K+++H N L +P G D+ ++ ID +
Sbjct: 84 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 143
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H DL N L++ + + DF ++K+L
Sbjct: 144 GMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 182
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VA+K Q + +F ++ + K ++H+
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
Query: 221 XXXXPWYLSSCVMPNG---DFPER-------LNIMIDMALAF-EYLHHGRSTPMVHCDLK 269
P Y+ + M NG DF + +N ++DMA E + +H DL+
Sbjct: 80 E---PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR 136
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ + + ++DF +++L+
Sbjct: 137 AANILVSDTLSCKIADFGLARLI 159
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 123 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 172
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 127 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 176
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 122 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 171
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 6 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 65
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPERLNIMID----------MAL 250
K+++H N L +P G D+ ++ ID +
Sbjct: 66 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 125
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H DL N L++ + + DF ++K+L
Sbjct: 126 GMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 164
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VA+K Q + +F ++ + K ++H+
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 85
Query: 221 XXXXPWYLSSCVMPNG---DFPER-------LNIMIDMALAF-EYLHHGRSTPMVHCDLK 269
P Y+ + M NG DF + +N ++DMA E + +H DL+
Sbjct: 86 E---PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR 142
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ + + ++DF +++L+
Sbjct: 143 AANILVSDTLSCKIADFGLARLI 165
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 121 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 170
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 17 SLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASL 76
S+PS + + + LDLS NR+ + +L L L N SF SL SL
Sbjct: 19 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 77 EFLDLSSNNLSGKIPKSLEALSNLKELNV 105
E LDLS N LS + LS+L LN+
Sbjct: 77 EHLDLSYNYLSNLSSSWFKPLSSLTFLNL 105
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 121 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 170
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 120 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 123 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 172
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VA+K Q + +F ++ + K ++H+
Sbjct: 30 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 88
Query: 221 XXXXPWYLSSCVMPNG---DFPER-------LNIMIDMALAF-EYLHHGRSTPMVHCDLK 269
P Y+ + M NG DF + +N ++DMA E + +H DL+
Sbjct: 89 E---PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR 145
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ + + ++DF +++L+
Sbjct: 146 AANILVSDTLSCKIADFGLARLI 168
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 114 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 163
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 4 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 63
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPERLNIMID----------MAL 250
K+++H N L +P G D+ ++ ID +
Sbjct: 64 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 123
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H DL N L++ + + DF ++K+L
Sbjct: 124 GMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 162
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 6 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 65
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPERLNIMID----------MAL 250
K+++H N L +P G D+ ++ ID +
Sbjct: 66 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 125
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H DL N L++ + + DF ++K+L
Sbjct: 126 GMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 164
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
L ++ D A EYL S +H DL N L+ E V +SDF +S+
Sbjct: 216 LQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSR 261
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
L ++ D A EYL S +H DL N L+ E V +SDF +S+
Sbjct: 216 LQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSR 261
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 239 PERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
PE M +YLH+ R ++H DLK N L++DM + DF ++
Sbjct: 126 PEARYFMRQTIQGVQYLHNNR---VIHRDLKLGNLFLNDDMDVKIGDFGLA 173
>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue
pdb|2PMN|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp-Site
Inhibitor
pdb|2PMO|X Chain X, Crystal Structure Of Pfpk7 In Complex With Hymenialdisine
Length = 348
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+F Y+H+ ++ + H D+KPSN L+D++ +SDF S+ +
Sbjct: 163 SFSYIHNEKN--ICHRDVKPSNILMDKNGRVKLSDFGESEYM 202
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VA+K Q + +F ++ + K ++H+
Sbjct: 31 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 89
Query: 221 XXXXPWYLSSCVMPNG---DFPER-------LNIMIDMALAF-EYLHHGRSTPMVHCDLK 269
P Y+ + M NG DF + +N ++DMA E + +H DL+
Sbjct: 90 E---PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR 146
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ + + ++DF +++L+
Sbjct: 147 AANILVSDTLSCKIADFGLARLI 169
>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC7|D Chain D, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC8|A Chain A, Crystal Structure Of The Apo Erk5 Kinase Domain
pdb|4IC8|B Chain B, Crystal Structure Of The Apo Erk5 Kinase Domain
Length = 442
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+Y+H S ++H DLKPSN L++E+ + DF +++ L
Sbjct: 171 GLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMARGL 209
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 5 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 64
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPERLNIMID----------MAL 250
K+++H N L +P G D+ ++ ID +
Sbjct: 65 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 124
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H DL N L++ + + DF ++K+L
Sbjct: 125 GMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 163
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
L + D+ A EYL S +H DL N L+++ V VSDF +S+ +
Sbjct: 123 LEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYV 170
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 239 PERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
PE M +YLH+ R ++H DLK N L++DM + DF ++
Sbjct: 142 PEARYFMRQTIQGVQYLHNNR---VIHRDLKLGNLFLNDDMDVKIGDFGLA 189
>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor
Length = 398
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+Y+H S ++H DLKPSN L++E+ + DF +++ L
Sbjct: 170 GLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMARGL 208
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 10 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 69
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPERLNIMID----------MAL 250
K+++H N L +P G D+ ++ ID +
Sbjct: 70 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 129
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H DL N L++ + + DF ++K+L
Sbjct: 130 GMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 168
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 239 PERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
PE M +YLH+ R ++H DLK N L++DM + DF ++
Sbjct: 142 PEARYFMRQTIQGVQYLHNNR---VIHRDLKLGNLFLNDDMDVKIGDFGLA 189
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
L + D+ A EYL S +H DL N L+++ V VSDF +S+ +
Sbjct: 123 LEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYV 170
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF ++KLLG
Sbjct: 117 LNWCVQIAEGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 166
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
L + D+ A EYL S +H DL N L+++ V VSDF +S+ +
Sbjct: 114 LEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYV 161
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 239 PERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
PE M +YLH+ R ++H DLK N L++DM + DF ++
Sbjct: 142 PEARYFMRQTIQGVQYLHNNR---VIHRDLKLGNLFLNDDMDVKIGDFGLA 189
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
A +Y H +VH DLK N LLD DM ++DF S
Sbjct: 125 AVQYCHQ---KFIVHRDLKAENLLLDADMNIKIADFGFS 160
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
A +Y H +VH DLK N LLD DM ++DF S
Sbjct: 125 AVQYCHQ---KFIVHRDLKAENLLLDADMNIKIADFGFS 160
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
L + D+ A EYL S +H DL N L+++ V VSDF +S+ +
Sbjct: 108 LEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYV 155
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
A +Y H +VH DLK N LLD DM ++DF S
Sbjct: 125 AVQYCHQ---KFIVHRDLKAENLLLDADMNIKIADFGFS 160
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
A +Y H +VH DLK N LLD DM ++DF S
Sbjct: 125 AVQYCHQ---KFIVHRDLKAENLLLDADMNIKIADFGFS 160
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
A +Y H +VH DLK N LLD DM ++DF S
Sbjct: 118 AVQYCHQ---KFIVHRDLKAENLLLDADMNIKIADFGFS 153
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
A +Y H +VH DLK N LLD DM ++DF S
Sbjct: 125 AVQYCHQ---KFIVHRDLKAENLLLDADMNIKIADFGFS 160
>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYN|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYO|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
pdb|3NYO|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
Length = 576
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 233 MPNGDFPERLNIM--IDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
M FPE + ++ E LH R +V+ DLKP N LLD+ +SD
Sbjct: 278 MGQAGFPEARAVFYAAEICCGLEDLHRER---IVYRDLKPENILLDDHGHIRISDLG--- 331
Query: 291 LLGVLLPETFTRK 303
L V +PE T K
Sbjct: 332 -LAVHVPEGQTIK 343
>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
pdb|2ACX|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
Length = 576
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 233 MPNGDFPERLNIM--IDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
M FPE + ++ E LH R +V+ DLKP N LLD+ +SD
Sbjct: 278 MGQAGFPEARAVFYAAEICCGLEDLHRER---IVYRDLKPENILLDDHGHIRISDLG--- 331
Query: 291 LLGVLLPETFTRK 303
L V +PE T K
Sbjct: 332 -LAVHVPEGQTIK 343
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
L+ + + LA +++H + ++H D+K N L +D + DF I+++L
Sbjct: 128 LDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVL 175
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
L + D+ A EYL S +H DL N L+++ V VSDF +S+ +
Sbjct: 107 LEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYV 154
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VA+K Q + +F ++ + K ++H+
Sbjct: 21 LGAGQAGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
Query: 221 XXXXPWYLSSCVMPNG---DFPER-------LNIMIDMALAF-EYLHHGRSTPMVHCDLK 269
P Y+ + M NG DF + +N ++DMA E + +H DL+
Sbjct: 80 E---PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR 136
Query: 270 PSNNLLDEDMVAHVSDFNISKLL 292
+N L+ + + ++DF +++L+
Sbjct: 137 AANILVSDTLSCKIADFGLARLI 159
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
A +Y H +VH DLK N LLD DM ++DF S
Sbjct: 126 AVQYCHQ---KYIVHRDLKAENLLLDGDMNIKIADFGFS 161
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
L + D+ A EYL S +H DL N L+++ V VSDF +S+ +
Sbjct: 108 LEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYV 155
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 6 QINLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITI-SGLKDLTTLFLAGNRSQG 64
++ L N +S P NL L L L NRL IP+ + +GL +LT L ++ N+
Sbjct: 60 ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIVI 118
Query: 65 SIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPT 116
+ F+ L +L+ L++ N+L ++ L++L++L + L IPT
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPT 169
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 57 LAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPT 116
L NR + F S LE L+L+ N +S P + L NL+ L + NRL+
Sbjct: 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL---- 94
Query: 117 NVPFGNFSSQS 127
+P G F+ S
Sbjct: 95 -IPLGVFTGLS 104
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 240 ERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+R++ D+A YLH S ++H DL N L+ E+ V+DF +++L+
Sbjct: 109 QRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLM 158
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
L + D+ A EYL S +H DL N L+++ V VSDF +S+ +
Sbjct: 103 LEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYV 150
>pdb|1J5P|A Chain A, Crystal Structure Of Aspartate Dehydrogenase (tm1643) From
Thermotoga Maritima At 1.9 A Resolution
Length = 253
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 88 GKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSSQSFISNYALCAHQDSKRTSYLD 147
G I K L L N +++ +Y+R+ +IP V F S +S CA ++ + L
Sbjct: 21 GNIGKKLVELGNFEKI-YAYDRISKDIPGVVRLDEFQVPSDVSTVVECASPEAVKEYSLQ 79
Query: 148 ILQ 150
IL+
Sbjct: 80 ILK 82
>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 11 (p38 Beta) In Complex With Nilotinib
Length = 348
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 135 GLKYIH---SAGIIHRDLKPSNVAVNEDCELRILDFGLAR 171
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLL---DEDMVAHVSDFNISKLLG 293
A YLH +VH DLKP N L DE+ +SDF +SK+ G
Sbjct: 132 AVYYLHR---MGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEG 174
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 143 GLKYIH---SAGIIHRDLKPSNVAVNEDSELRILDFGLAR 179
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ M G+ + L +++ MA A EYL
Sbjct: 78 CTREP--PFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---F 132
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 133 IHRDLAARNCLVGENHLVKVADFGLSRLM 161
>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In
A Putative Auto-Inhibition State
Length = 340
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 243 NIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
I + + A E+LH S ++H D+KPSN L++ + DF IS L
Sbjct: 157 KIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALGQVKMCDFGISGYL 204
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 17 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 75
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ M G+ + L +++ MA A EYL
Sbjct: 76 CTREP--PFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---F 130
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 131 IHRDLAARNCLVGENHLVKVADFGLSRLM 159
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 143 GLKYIH---SAGIIHRDLKPSNVAVNEDSELRILDFGLAR 179
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 20 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 78
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ M G+ + L +++ MA A EYL
Sbjct: 79 CTREP--PFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---F 133
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 134 IHRDLAARNCLVGENHLVKVADFGLSRLM 162
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ M G+ + L +++ MA A EYL
Sbjct: 78 CTREP--PFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---F 132
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 133 IHRDLAARNCLVGENHLVKVADFGLSRLM 161
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 61/162 (37%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 9 QFEERHLKFLRQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 68
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNGDFPERLNI---MID----------MAL 250
K+++H N L +P G E L ID +
Sbjct: 69 KSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQKHKERIDHIKLLQYTSQICK 128
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H DL N L++ + + DF ++K+L
Sbjct: 129 GMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 167
>pdb|1H2H|A Chain A, Crystal Structure Of Tm1643
Length = 241
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 88 GKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSSQSFISNYALCAHQDSKRTSYLD 147
G I K L L N +++ +Y+R+ +IP V F S +S CA ++ + L
Sbjct: 9 GNIGKKLVELGNFEKI-YAYDRISKDIPGVVRLDEFQVPSDVSTVVECASPEAVKEYSLQ 67
Query: 148 ILQ 150
IL+
Sbjct: 68 ILK 70
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/146 (19%), Positives = 59/146 (40%), Gaps = 20/146 (13%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + + T VA+K + ++F + + K ++H
Sbjct: 20 LGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRLYAVVTK 78
Query: 221 XXXXPWYLSSCVMPNG---DF-----------PERLNIMIDMALAFEYLHHGRSTPMVHC 266
P Y+ + M G DF P+ ++ +A Y+ +H
Sbjct: 79 EE--PIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKN---YIHR 133
Query: 267 DLKPSNNLLDEDMVAHVSDFNISKLL 292
DL+ +N L+ E ++ ++DF +++++
Sbjct: 134 DLRAANVLVSESLMCKIADFGLARVI 159
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 19 PSNIQNLKVLIGLDLSINRLYGDIPITI-SGLKDLTTLFLAGNRSQGSIPKSFESLASLE 77
P QN+ +L L L N L +P I LTTL ++ N + +F++ SL+
Sbjct: 110 PHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
Query: 78 FLDLSSNNLSGKIPKSLEALSNLKELNVSYNRL 110
L LSSN L+ L + +L NVSYN L
Sbjct: 169 NLQLSSNRLTH---VDLSLIPSLFHANVSYNLL 198
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 257 HGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
H ++H DLKP N L++ D ++DF +++ G+
Sbjct: 134 HCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGI 171
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 257 HGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
H ++H DLKP N L++ D ++DF +++ G+
Sbjct: 134 HCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGI 171
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
L + +D+ YL ++H DL N L+ E+ V VSDF +++ +
Sbjct: 106 LGMCLDVCEGMAYLEEA---SVIHRDLAARNCLVGENQVIKVSDFGMTRFV 153
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 24 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 82
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ M G+ + L +++ MA A EYL
Sbjct: 83 CTREP--PFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---F 137
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H DL N L+ E+ + V+DF +S+L+
Sbjct: 138 IHRDLAARNCLVGENHLVKVADFGLSRLM 166
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
A Y+H S ++H +LKP N +DE + DF ++K
Sbjct: 128 ALSYIH---SQGIIHRNLKPXNIFIDESRNVKIGDFGLAK 164
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXX 217
H LG G VY+ ++ + VA+K + F + V K ++H N
Sbjct: 223 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGV 281
Query: 218 XXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRSTPM 263
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 282 CTREP--PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYL---EKKNF 336
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H +L N L+ E+ + V+DF +S+L+
Sbjct: 337 IHRNLAARNCLVGENHLVKVADFGLSRLM 365
>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|B Chain B, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|C Chain C, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|D Chain D, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
Length = 316
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 243 NIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
I + + A E+LH S ++H D+KPSN L++ DF IS L
Sbjct: 140 KIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALGQVKXCDFGISGYL 187
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 47 SGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVS 106
GL+ L L L N+ K+F L L+ L +S N+L +IP +L S+L EL +
Sbjct: 75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131
Query: 107 YNRLEGEIPTNVPFGNFSS 125
NR+ VP G FS
Sbjct: 132 DNRIR-----KVPKGVFSG 145
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF +KLLG
Sbjct: 122 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGRAKLLGA 171
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 27/152 (17%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFN---LQLERAFRSFDSKCEVHKNVRHRNXXXX 214
H LG G VY+ ++ + VA+K +++E F + V K ++H N
Sbjct: 226 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE----FLKEAAVMKEIKHPNLVQL 281
Query: 215 XXXXXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRS 260
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 282 LGVCTREP--PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN- 338
Query: 261 TPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H +L N L+ E+ + V+DF +S+L+
Sbjct: 339 --FIHRNLAARNCLVGENHLVKVADFGLSRLM 368
>pdb|4EXU|A Chain A, Mapk13, Inactive Form
pdb|4EYJ|A Chain A, Mapk13 Complex With Inhibitor
pdb|4EYM|A Chain A, Mapk13 Complex With Inhibitor
Length = 371
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
E++ ++ M +Y+H S +VH DLKP N ++ED + DF +++
Sbjct: 144 EKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLAR 192
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 243 NIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
I + + A E+LH S ++H D+KPSN L++ + DF IS L
Sbjct: 113 KIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALGQVKMCDFGISGYL 160
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 232 VMPNGDFPERLN--IMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFN 287
+M N D PE+ ++ LA + +H S ++H D+KP N LLD+ ++DF
Sbjct: 165 LMSNYDVPEKWAKFYTAEVVLALDAIH---SMGLIHRDVKPDNMLLDKHGHLKLADFG 219
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 27/152 (17%)
Query: 159 HLLGTESLGSVYKWIFLDET-NVAIKVFN---LQLERAFRSFDSKCEVHKNVRHRNXXXX 214
H LG G VY+ ++ + VA+K +++E F + V K ++H N
Sbjct: 265 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE----FLKEAAVMKEIKHPNLVQL 320
Query: 215 XXXXXXXXXXPWYLSSCVMPNGDFPERLN----------IMIDMAL----AFEYLHHGRS 260
P+Y+ + M G+ + L +++ MA A EYL
Sbjct: 321 LGVCTREP--PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYL---EK 375
Query: 261 TPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
+H +L N L+ E+ + V+DF +S+L+
Sbjct: 376 KNFIHRNLAARNCLVGENHLVKVADFGLSRLM 407
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF +KLLG
Sbjct: 127 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGRAKLLGA 176
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF +KLLG
Sbjct: 122 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGRAKLLGA 171
>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase
Length = 353
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
E++ ++ M +Y+H S +VH DLKP N ++ED + DF +++
Sbjct: 126 EKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLAR 174
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF +KLLG
Sbjct: 120 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGRAKLLGA 169
>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
pdb|3E93|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
Length = 371
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 148 GLKYIH---SADIIHRDLKPSNLAVNEDXELKILDFGLAR 184
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF +KLLG
Sbjct: 122 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGRAKLLGA 171
>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
pdb|3IPH|A Chain A, Crystal Structure Of P38 In Complex With A Biphenylamide
Inhibitor
Length = 360
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDXELKILDFGLAR 173
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 9 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 68
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNGDFPERLNIMID-------------MAL 250
K+++H N L +P G + L + +
Sbjct: 69 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAERIDHIKLLQYTSQICK 128
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H DL N L++ + + DF ++K+L
Sbjct: 129 GMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 167
>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195
Length = 365
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 142 GLKYIH---SADIIHRDLKPSNLAVNEDXELKILDFGLAR 178
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LN + +A YL R +VH DL N L+ ++DF +KLLG
Sbjct: 124 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGRAKLLGA 173
>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine
pdb|4AA5|A Chain A, P38alpha Map Kinase Bound To Cmpd 33
Length = 365
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 142 GLKYIH---SADIIHRDLKPSNLAVNEDXELKILDFGLAR 178
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 227 YLSSCVMPNGDF-PERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSD 285
Y SC NGD PE + + L H R+ ++H DLKP N L++ + ++D
Sbjct: 90 YFDSC---NGDLDPEIVKSFLFQLLKGLGFCHSRN--VLHRDLKPQNLLINRNGELKLAD 144
Query: 286 FNISKLLGV 294
F +++ G+
Sbjct: 145 FGLARAFGI 153
>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole
Inhibitor
Length = 372
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 149 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 185
>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195
pdb|3FKL|A Chain A, P38 Kinase Crystal Structure In Complex With Ro9552
pdb|3FKN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro7125
pdb|3FL4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro5634
pdb|3FLQ|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((S)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin
pdb|3FLS|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((R)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin-7-One
pdb|3FLW|A Chain A, P38 Kinase Crystal Structure In Complex With Pamapimod
pdb|3FLY|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-Isopropylamino-8-Methyl-8h-Pyrido[2,
3- D]pyrimidin-7-One
pdb|3FLZ|A Chain A, P38 Kinase Crystal Structure In Complex With
8-Methyl-6-Phenoxy-2-
(Tetrahydro-Pyran-4-Ylamino)-8h-Pyrido[2,
3-D]pyrimidin-7-One
pdb|3FMH|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((R)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FMJ|A Chain A, P38 Kinase Crystal Structure In Complex With
4-(5-Methyl-3-Phenyl- Isoxazol-4-Yl)-Pyrimidin-2-Ylamine
pdb|3FMK|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((S)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FML|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6224
pdb|3FMM|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6226
pdb|3FMN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro2530
pdb|3FSF|A Chain A, P38 Kinase Crystal Structure In Complex With 3-(2,6-
Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-
Phenylamino]-
1-Methyl-3,4-Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3FSK|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6257
Length = 372
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 149 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 185
>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499
pdb|3FKO|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3668
pdb|3FLN|C Chain C, P38 Kinase Crystal Structure In Complex With R1487
Length = 372
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 149 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 185
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/146 (19%), Positives = 59/146 (40%), Gaps = 20/146 (13%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + + T VA+K + ++F + + K ++H
Sbjct: 21 LGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRLYAVVTR 79
Query: 221 XXXXPWYLSSCVMPNG---DF-----------PERLNIMIDMALAFEYLHHGRSTPMVHC 266
P Y+ + M G DF P+ ++ +A Y+ +H
Sbjct: 80 EE--PIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKN---YIHR 134
Query: 267 DLKPSNNLLDEDMVAHVSDFNISKLL 292
DL+ +N L+ E ++ ++DF +++++
Sbjct: 135 DLRAANVLVSESLMCKIADFGLARVI 160
>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor
Length = 383
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 160 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 196
>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A
Pyrrole-2- Carboxamide Inhibitor
Length = 371
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 148 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 184
>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1-
Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3-
Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide
Length = 380
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 157 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 193
>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955
Length = 350
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 135 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 171
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 169 VHRDLAARNILVNSNLVCKVSDFGLSRVL 197
>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48
pdb|3GCU|B Chain B, Human P38 Map Kinase In Complex With Rl48
pdb|3HV4|A Chain A, Human P38 Map Kinase In Complex With Rl51
pdb|3HV4|B Chain B, Human P38 Map Kinase In Complex With Rl51
pdb|3HV5|A Chain A, Human P38 Map Kinase In Complex With Rl24
pdb|3HV5|B Chain B, Human P38 Map Kinase In Complex With Rl24
pdb|3HV6|A Chain A, Human P38 Map Kinase In Complex With Rl39
pdb|3HV7|A Chain A, Human P38 Map Kinase In Complex With Rl38
pdb|3HUC|A Chain A, Human P38 Map Kinase In Complex With Rl40
pdb|3LFA|A Chain A, Human P38 Map Kinase In Complex With Dasatinib
pdb|3QUE|A Chain A, Human P38 Map Kinase In Complex With Skepinone-L
pdb|3QUD|A Chain A, Human P38 Map Kinase In Complex With
2-Amino-Phenylamino-Benzophenone
pdb|3UVP|A Chain A, Human P38 Map Kinase In Complex With A Benzamide
Substituted Benzosuberone
pdb|3UVQ|A Chain A, Human P38 Map Kinase In Complex With A Dibenzosuberone
Derivative
pdb|4EH2|A Chain A, Human P38 Map Kinase In Complex With Np-F1 And Rl87
pdb|4EH3|A Chain A, Human P38 Map Kinase In Complex With Np-F2 And Rl87
pdb|4EH4|A Chain A, Human P38 Map Kinase In Complex With Np-F3 And Rl87
pdb|4EH5|A Chain A, Human P38 Map Kinase In Complex With Np-F4 And Rl87
pdb|4EH6|A Chain A, Human P38 Map Kinase In Complex With Np-F5 And Rl87
pdb|4EH7|A Chain A, Human P38 Map Kinase In Complex With Np-F6 And Rl87
pdb|4EH8|A Chain A, Human P38 Map Kinase In Complex With Np-F7 And Rl87
pdb|4EH9|A Chain A, Human P38 Map Kinase In Complex With Np-F11 And Rl87
pdb|4EHV|A Chain A, Human P38 Map Kinase In Complex With Np-F10 And Rl87
pdb|3UVR|A Chain A, Human P38 Map Kinase In Complex With Km064
pdb|4DLI|A Chain A, Human P38 Map Kinase In Complex With Rl87
pdb|4DLJ|A Chain A, Human P38 Map Kinase In Complex With Rl163
Length = 360
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-A
pdb|2FSM|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-B
Length = 367
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 144 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 180
>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995
pdb|1BL7|A Chain A, The Complex Structure Of The Map Kinase P38SB220025
pdb|2EWA|A Chain A, Dual Binding Mode Of Pyridinylimidazole To Map Kinase P38
pdb|1A9U|A Chain A, The Complex Structure Of The Map Kinase P38SB203580
pdb|3HA8|A Chain A, The Complex Structure Of The Map Kinase P38COMPOUND 14B
Length = 379
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 156 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 192
>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121
Length = 362
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 139 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 175
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDM--------VAHVSDFNISK 290
+N + +A YLH P++H DLK SN L+ + + + ++DF +++
Sbjct: 108 VNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAR 164
>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l)
Activating Mutant
Length = 367
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 144 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 180
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 122 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 162
>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based
Inhibitor
Length = 383
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 160 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 196
>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
Length = 360
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase
Length = 367
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 144 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 180
>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a)
Activating Mutant
Length = 367
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 144 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 180
>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
Length = 349
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 134 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 170
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 232 VMPNGDFPERLN--IMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDF 286
+M N D PE+ ++ LA + +H S +H D+KP N LLD+ ++DF
Sbjct: 159 LMSNYDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADF 212
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 122 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 162
>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant
Length = 360
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 33/161 (20%)
Query: 151 ATDEFNEWHLLGTESLGSVY-------KWIFLDETNVAIKV-FNLQLERAF--RSFDSKC 200
A ++F LG G+VY K+I +A+KV F QLE+A +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFI------LALKVLFKAQLEKAGVEHQLRREV 64
Query: 201 EVHKNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNGDFPERLN------------IMIDM 248
E+ ++RH N YL P G+ + L + ++
Sbjct: 65 EIQSHLRHPNILRLYGYFHDATRV--YLILEYAPRGEVYKELQKLSKFDEQRTATYITEL 122
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
A A Y H R ++H D+KP N LL ++DF S
Sbjct: 123 ANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWS 160
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 232 VMPNGDFPERLN--IMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDF 286
+M N D PE+ ++ LA + +H S +H D+KP N LLD+ ++DF
Sbjct: 164 LMSNYDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADF 217
>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant
Length = 360
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex
With Dp802
Length = 354
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 157 VHRDLAARNILINSNLVCKVSDFGLSRVL 185
>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase
Length = 362
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 139 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 175
>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A
Dihydroquinazolinone Inhibitor
pdb|1OUK|A Chain A, The Structure Of P38 Alpha In Complex With A
Pyridinylimidazole Inhibitor
pdb|1OUY|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydropyrido- Pyrimidine Inhibitor
pdb|1R39|A Chain A, The Structure Of P38alpha
pdb|1YQJ|A Chain A, Crystal Structure Of P38 Alpha In Complex With A Selective
Pyridazine Inhibitor
pdb|2OKR|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2OKR|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|B Chain B, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|1WFC|A Chain A, Structure Of Apo, Unphosphorylated, P38 Mitogen Activated
Protein Kinase P38 (P38 Map Kinase) The Mammalian
Homologue Of The Yeast Hog1 Protein
pdb|3DS6|A Chain A, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|B Chain B, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|C Chain C, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|D Chain D, P38 Complex With A Phthalazine Inhibitor
pdb|3FC1|X Chain X, Crystal Structure Of P38 Kinase Bound To
Pyrimido-Pyridazinone Inhibitor
pdb|3GFE|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor
pdb|3ITZ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridazine Inhibitor
pdb|3LHJ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor.
pdb|3ZYA|A Chain A, Human P38 Map Kinase In Complex With 2-Amino-Phenylamino-
Dibenzosuberone
pdb|3U8W|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Triazolopyridazinone Inhibitor
Length = 366
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 143 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 179
>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase
Length = 380
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 157 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 193
>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map
Kinase
Length = 360
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant
Length = 360
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376
pdb|3NNV|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp437
pdb|3NNW|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp802
Length = 354
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSI 66
+ LF+N ++ P ++NL L L+LS N + DI +SGL L L + N Q +
Sbjct: 112 LTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLSFSSN--QVTD 165
Query: 67 PKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIP 115
K +L +LE LD+SSN +S L L+NL+ L + N++ P
Sbjct: 166 LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine
pdb|2YIX|A Chain A, Triazolopyridine Inhibitors Of P38
Length = 351
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 134 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 170
>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase
Length = 360
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In
Complex With 4-[3-Methylsulfanylanilino]-6,7-
Dimethoxyquinazoline
pdb|1KV1|A Chain A, P38 Map Kinase In Complex With Inhibitor 1
pdb|1KV2|A Chain A, Human P38 Map Kinase In Complex With Birb 796
pdb|1WBO|A Chain A, Fragment Based P38 Inhibitors
pdb|1W7H|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W82|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W83|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W84|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1ZZ2|A Chain A, Two Classes Of P38alpha Map Kinase Inhibitors Having A
Common Diphenylether Core But Exhibiting Divergent
Binding Modes
pdb|1WBN|A Chain A, Fragment Based P38 Inhibitors
pdb|1WBS|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBT|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-based Lead Generation.
pdb|1WBV|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBW|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1ZYJ|A Chain A, Human P38 Map Kinase In Complex With Inhibitor 1a
pdb|2ZAZ|A Chain A, Crystal Structure Of P38 In Complex With 4-Anilino
Quinoline Inhibitor
pdb|2ZB0|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|2ZB1|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|3HL7|A Chain A, Crystal Structure Of Human P38alpha Complexed With Sd-0006
pdb|3HLL|A Chain A, Crystal Structure Of Human P38alpha Complexed With
Ph-797804
pdb|3HP2|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyridinone Compound
pdb|3HP5|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyrimidopyridazinone Compound
pdb|3KF7|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Triazolopyrimidine Compound
pdb|3MGY|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3ROC|A Chain A, Crystal Structure Of Human P38 Alpha Complexed With A
Pyrimidinone Compound
pdb|3RIN|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|4E5B|A Chain A, Structure Of P38a Map Kinase Without Bog
pdb|4E6A|A Chain A, P38a-Pia23 Complex
pdb|4E6C|A Chain A, P38a-perifosine Complex
pdb|4E8A|A Chain A, The Crystal Structure Of P38a Map Kinase In Complex With
Pia24
Length = 360
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 117 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 157
>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea
pdb|2BAK|A Chain A, P38alpha Map Kinase Bound To Mpaq
pdb|4A9Y|A Chain A, P38alpha Map Kinase Bound To Cmpd 8
pdb|4AA0|A Chain A, P38alpha Map Kinase Bound To Cmpd 2
pdb|4AA4|A Chain A, P38alpha Map Kinase Bound To Cmpd 22
pdb|4AAC|A Chain A, P38alpha Map Kinase Bound To Cmpd 29
Length = 365
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 142 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 178
>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715
pdb|3ZSH|A Chain A, X-Ray Structure Of P38alpha Bound To Scio-469
pdb|3ZSI|A Chain A, X-Ray Structure Of P38alpha Bound To Vx-745
pdb|3ZS5|A Chain A, Structural Basis For Kinase Selectivity Of Three Clinical
P38alpha Inhibitors
Length = 362
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 139 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 175
>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|B Chain B, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|C Chain C, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALO|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Ternary Complex With Amp-Pnp And P38 Peptide
pdb|3VUT|A Chain A, Crystal Structures Of Non-Phosphorylated Map2k4
pdb|3VUT|B Chain B, Crystal Structures Of Non-Phosphorylated Map2k4
Length = 327
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 238 FPERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
PE + I +A H + ++H D+KPSN LLD + DF IS L
Sbjct: 122 IPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQL 176
>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|3MW1|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|2YIS|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase.
pdb|2YIW|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase
Length = 359
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 136 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 172
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 118 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 158
>pdb|3HEC|A Chain A, P38 In Complex With Imatinib
pdb|3HEG|A Chain A, P38 In Complex With Sorafenib
Length = 348
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 133 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 169
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 140 VHRDLAARNILINSNLVCKVSDFGLSRVL 168
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 140 VHRDLAARNILINSNLVCKVSDFGLSRVL 168
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 119 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 159
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 232 VMPNGDFPERLN--IMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDF 286
+M N D PE+ ++ LA + +H S +H D+KP N LLD+ ++DF
Sbjct: 164 LMSNYDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADF 217
>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A
Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE
COMPLEX IN Solution
Length = 359
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 142 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 178
>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 380
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 157 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 193
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 32 DLSINRLYGDIPITISGLKDLTTLFLAGNR----SQGSIPKSFESLASLEFLDLSSNNLS 87
+LS NR++G + + L +LT L L+GN+ S K E L SL+ + NL+
Sbjct: 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136
Query: 88 GKIPKSLEALSNLKELNVSYNRLEGEIP 115
+ L L L+ Y+R + E P
Sbjct: 137 DYRESVFKLLPQLTYLD-GYDREDQEAP 163
>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655
pdb|1P38|A Chain A, The Structure Of The Map Kinase P38 At 2.1 Angstoms
Resolution
Length = 379
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 156 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 192
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 117 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 157
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 118 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 158
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 118 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 158
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 116 GLAFCHSHR-----VLHRDLKPENLLINTEGAIKLADFGLARAFGV 156
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 33/161 (20%)
Query: 151 ATDEFNEWHLLGTESLGSVY-------KWIFLDETNVAIKV-FNLQLERAF--RSFDSKC 200
A ++F LG G+VY K+I +A+KV F QLE+A +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFI------LALKVLFKAQLEKAGVEHQLRREV 64
Query: 201 EVHKNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNGDFPERLN------------IMIDM 248
E+ ++RH N YL P G+ + L + ++
Sbjct: 65 EIQSHLRHPNILRLYGYFHDATRV--YLILEYAPRGEVYKELQKLSKFDEQRTATYITEL 122
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
A A Y H R ++H D+KP N LL ++DF S
Sbjct: 123 ANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWS 160
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 116 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 156
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 115 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 155
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 114 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 154
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 115 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 155
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 11/59 (18%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGVLLPETFTRKKP 305
++ L E++H + +V+ DLKP+N LLDE +SD ++ F++KKP
Sbjct: 299 EIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLAC--------DFSKKKP 346
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 116 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 156
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 118 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 158
>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B
Akt By Hydrophobic Motif Phosphorylation
pdb|1GZO|A Chain A, Structure Of Protein Kinase B Unphosphorylated
Length = 315
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
A EYLH S +V+ D+K N +LD+D ++DF + K
Sbjct: 117 ALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCK 153
>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P-
Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl-
Pyridin-3-Yl)naphthalen-1-Yl]urea
pdb|3CTQ|A Chain A, Structure Of Map Kinase P38 In Complex With A
1-O-Tolyl-1,2, 3-Triazole-4-Carboxamide
Length = 348
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 133 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 169
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 115 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 155
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 118 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 158
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 118 GLAFCHSHR-----VLHRDLKPENLLINTEGAIKLADFGLARAFGV 158
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 117 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 157
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 11/59 (18%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGVLLPETFTRKKP 305
++ L E++H + +V+ DLKP+N LLDE +SD ++ F++KKP
Sbjct: 300 EIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLAC--------DFSKKKP 347
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 115 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 155
>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With
Inhibitor Pg-874743
pdb|2GHM|A Chain A, Mutated Map Kinase P38 (Mus Musculus) In Complex With
Inhbitor Pg-895449
Length = 348
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 133 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 169
>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B
(pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3
Peptide
Length = 337
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
A EYLH S +V+ D+K N +LD+D ++DF + K
Sbjct: 117 ALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCK 153
>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In
Phosphorylated P38a And In Solution
Length = 370
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 147 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 183
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 115 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 155
>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain
In Complex With A Monocyclic Pyrazolone Inhibitor
Length = 360
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain
Length = 335
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
A EYLH S +V+ D+K N +LD+D ++DF + K
Sbjct: 117 ALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCK 153
>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Nuclear Substrate Mef2a
pdb|1LEZ|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Activator Mkk3b
Length = 360
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 146 VHRDLAARNILINSNLVCKVSDFGLSRVL 174
>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With
Inhibitor Pg-892579
pdb|2GTN|A Chain A, Mutated Map Kinase P38 (mus Musculus) In Complex With
Inhbitor Pg-951717
Length = 348
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 133 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 169
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 114 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 154
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 117 GLAFCHSHR-----VLHRDLKPENLLINTEGAIKLADFGLARAFGV 157
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 115 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 155
>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38)
Length = 360
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 173
>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
pdb|1MRY|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
Length = 339
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
A EYLH S +V+ D+K N +LD+D ++DF + K
Sbjct: 120 ALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCK 156
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 114 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 154
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 55 LFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEI 114
L+L NR P F+ L L LDL +N L+ + L+ L +L+++ N+L+
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK--- 91
Query: 115 PTNVPFGNF 123
++P G F
Sbjct: 92 --SIPRGAF 98
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSI 66
+ LF+N ++ P ++NL L L+LS N + DI +SGL L L + N Q +
Sbjct: 112 LTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLSFSSN--QVTD 165
Query: 67 PKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIP 115
K +L +LE LD+SSN +S L L+NL+ L + N++ P
Sbjct: 166 LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 114 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 154
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 114 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 154
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 115 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 155
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
L + D+ +L S +H DL N L+D D+ VSDF +++ +
Sbjct: 107 LEMCYDVCEGMAFL---ESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYV 154
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
Y H R ++H DLKP N L++ + ++DF +++ G+
Sbjct: 115 YCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGI 152
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 11/59 (18%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGVLLPETFTRKKP 305
++ L E++H + +V+ DLKP+N LLDE +SD ++ F++KKP
Sbjct: 300 EIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLAC--------DFSKKKP 347
>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d
With Gsk3 Peptide And Amp-Pnp
Length = 336
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
A EYLH S +V+ D+K N +LD+D ++DF + K
Sbjct: 117 ALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCK 153
>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk
Docking Peptide
Length = 362
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 139 GLKYIH---SADIIHRDLKPSNLAVNEDSELKILDFGLAR 175
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 11/59 (18%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGVLLPETFTRKKP 305
++ L E++H + +V+ DLKP+N LLDE +SD ++ F++KKP
Sbjct: 300 EIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLAC--------DFSKKKP 347
>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E87|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3D0E|A Chain A, Crystal Structure Of Human Akt2 In Complex With Gsk690693
pdb|3D0E|B Chain B, Crystal Structure Of Human Akt2 In Complex With Gsk690693
Length = 335
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
A EYLH S +V+ D+K N +LD+D ++DF + K
Sbjct: 117 ALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCK 153
>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDR|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With The Inhibitor
A- 443654
pdb|2UW9|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|2X39|A Chain A, Structure Of
4-Amino-N-(4-Chlorobenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidine-4-Carboxamide Bound To Pkb
pdb|2XH5|A Chain A, Structure Of 4-(4-Tert-Butylbenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidin-4-Amine Bound To Pkb
Length = 342
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
A EYLH S +V+ D+K N +LD+D ++DF + K
Sbjct: 122 ALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCK 158
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 154 EFNEWHL-----LGTESLGSVYKWIF---LDETN--VAIKVFNLQLERAFRSFDSKCEVH 203
+F E HL LG + GSV + D T VA+K E R F+ + E+
Sbjct: 7 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 66
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG---DFPERLNIMID----------MAL 250
K+++H N L +P G D+ ++ ID +
Sbjct: 67 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICK 126
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
EYL R +H +L N L++ + + DF ++K+L
Sbjct: 127 GMEYLGTKR---YIHRNLATRNILVENENRVKIGDFGLTKVL 165
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 115 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 155
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 116 GLAFCHSHR-----VLHRDLKPENLLINTEGAIKLADFGLARAFGV 156
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 119 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 159
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
Y H R ++H DLKP N L++ + ++DF +++ G+
Sbjct: 115 YCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGI 152
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
Y H R ++H DLKP N L++ + ++DF +++ G+
Sbjct: 115 YCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGI 152
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 115 GLAFCHSHR-----VLHRDLKPENLLINTEGAIKLADFGLARAFGV 155
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 114 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 154
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 249 ALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
LAF + H ++H DLKP N L++ + ++DF +++ GV
Sbjct: 116 GLAFCHSHR-----VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 156
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 243 NIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKL 291
++M + ++LH R +VH DLKP N L+ ++DF ++++
Sbjct: 124 DMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARI 169
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 167 VHRDLAARNILINSNLVCKVSDFGLSRVL 195
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVL 197
>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydroquinolinone
pdb|1R3C|A Chain A, The Structure Of P38alpha C162s Mutant
pdb|2I0H|A Chain A, The Structure Of P38alpha In Complex With An
Arylpyridazinone
pdb|3GC7|A Chain A, The Structure Of P38alpha In Complex With A
Dihydroquinazolinone
pdb|3NEW|A Chain A, P38-Alpha Complexed With Compound 10
Length = 366
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 143 GLKYIH---SADIIHRDLKPSNLAVNEDSELKILDFGLAR 179
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVL 197
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVL 197
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVL 197
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVL 197
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVL 197
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSI 66
+ LF+N ++ P ++NL L L+LS N + DI +SGL L L + N Q +
Sbjct: 112 LTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLNFSSN--QVTD 165
Query: 67 PKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIP 115
K +L +LE LD+SSN +S L L+NL+ L + N++ P
Sbjct: 166 LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVL 197
>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha
pdb|3OHT|B Chain B, Crystal Structure Of Salmo Salar P38alpha
Length = 389
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 166 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 202
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 246 IDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ +A EYL + VH DL N +LDE V+DF +++
Sbjct: 131 LQVARGMEYLAEQK---FVHRDLAARNCMLDESFTVKVADFGLAR 172
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S+ L
Sbjct: 138 VHRDLAARNILVNSNLVCKVSDFGLSRFL 166
>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex
pdb|2QD9|A Chain A, P38 Alpha Map Kinase Inhibitor Based On Heterobicyclic
Scaffolds
pdb|2RG5|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11b
pdb|2RG6|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11j
pdb|3C5U|A Chain A, P38 Alpha Map Kinase Complexed With A Benzothiazole Based
Inhibitor
pdb|3BV2|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 30
pdb|3BV3|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 2
pdb|3BX5|A Chain A, P38 Alpha Map Kinase Complexed With Bms-640994
pdb|3L8X|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Pyrimidine
Based Inhibitor
pdb|3NWW|A Chain A, P38 Alpha Kinase Complexed With A
2-Aminothiazol-5-Yl-Pyrimidine Based Inhibitor
pdb|3MVL|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVL|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVM|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3MVM|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3OCG|A Chain A, P38 Alpha Kinase Complexed With A 5-Amino-Pyrazole Based
Inhibitor
pdb|3S4Q|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Triazine Based
Inhibitor
Length = 366
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 143 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 179
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 31 LDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSG-- 88
LDLS N L+ S L+ L L L N +FE +A L+ L LS N +S
Sbjct: 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152
Query: 89 -KIPKSLEALSNLKELNVSYNRLE 111
++ K L L L++S N+L+
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLK 176
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 239 PERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNN 273
PE LN +D+ALA E++H + ++H DL +N
Sbjct: 56 PELLNQALDVALALEFIH---TYSLIHDDLPAXDN 87
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 243 NIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKL 291
++M + ++LH R +VH DLKP N L+ ++DF ++++
Sbjct: 124 DMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARI 169
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 132 VHRDLAARNILVNSNLVCKVSDFGMSRVL 160
>pdb|2OZA|B Chain B, Structure Of P38alpha Complex
pdb|3P78|A Chain A, P38 Inhibitor-Bound
pdb|3P79|A Chain A, P38 Inhibitor-Bound
pdb|3P7A|A Chain A, P38 Inhibitor-Bound
pdb|3P7B|A Chain A, P38 Inhibitor-Bound
pdb|3P7C|A Chain A, P38 Inhibitor-Bound
pdb|3P5K|A Chain A, P38 Inhibitor-Bound
Length = 366
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 143 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 179
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 21/146 (14%)
Query: 161 LGTESLGSVYKWIFLDETNVAIKVFNLQLERAFRSFDSKCEVHKNVRHRNXXXXXXXXXX 220
LG G V+ + T VAIK + SF + ++ K ++H
Sbjct: 17 LGNGQFGEVWMGTWNGNTKVAIKTLKPGT-MSPESFLEEAQIMKKLKHDKLVQLYAVVSE 75
Query: 221 XXXXPWYLSSCVMPNG---DF-----------PERLNIMIDMALAFEYLHHGRSTPMVHC 266
P Y+ + M G DF P +++ +A Y+ +H
Sbjct: 76 E---PIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIER---MNYIHR 129
Query: 267 DLKPSNNLLDEDMVAHVSDFNISKLL 292
DL+ +N L+ ++ ++DF +++L+
Sbjct: 130 DLRSANILVGNGLICKIADFGLARLI 155
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 138 VHRDLAARNILVNSNLVCKVSDFGMSRVL 166
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S++L
Sbjct: 153 VHRDLAARNILVNSNLVCKVSDFGMSRVL 181
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 243 NIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKL 291
++M + ++LH R +VH DLKP N L+ ++DF ++++
Sbjct: 124 DMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARI 169
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S+ L
Sbjct: 140 VHRDLAARNILVNSNLVCKVSDFGLSRFL 168
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 19 PSNIQNLKVLIGLDLSINRLYGDIPITI-SGLKDLTTLFLAGNRSQGSIPKSFESLASLE 77
P QN+ +L L L N L +P I LTTL ++ N + +F++ SL+
Sbjct: 116 PHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 78 FLDLSSNNLSGKIPKSLEALSNLKELNVSYNRL 110
L LSSN L+ L + +L NVSYN L
Sbjct: 175 NLQLSSNRLTH---VDLSLIPSLFHANVSYNLL 204
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 67 PKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNFSSQ 126
P F+SL L +L+L+ N L+ + L+ L L + N+L+ IP V F N S
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK-SIPMGV-FDNLKSL 114
Query: 127 SFI 129
+ I
Sbjct: 115 THI 117
>pdb|4F3V|A Chain A, Crystal Structure Of N-Terminal Domain Of Ecca1 Atpase
From Esx-1 Secretion System Of Mycobacterium
Tuberculosis
pdb|4F3V|B Chain B, Crystal Structure Of N-Terminal Domain Of Ecca1 Atpase
From Esx-1 Secretion System Of Mycobacterium
Tuberculosis
Length = 282
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 14 LSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESL 73
LSGS+ ++ L I +I LYGDI ++ +T F A +QG+ + E+L
Sbjct: 70 LSGSVQISMSTLNARI----AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEAL 125
>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
pdb|3C4W|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
Length = 543
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 255 LHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
L H +++ DLKP N LLD+D +SD ++
Sbjct: 302 LEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLA 336
>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4X|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4Y|A Chain A, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Y|B Chain B, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Z|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 1.84a
pdb|3C50|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C50|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C51|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
pdb|3C51|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
Length = 543
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 255 LHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
L H +++ DLKP N LLD+D +SD ++
Sbjct: 302 LEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLA 336
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 263 MVHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
++H DLKP N L++ + ++DF +++ GV
Sbjct: 124 VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 155
>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution
Length = 543
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 255 LHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
L H +++ DLKP N LLD+D +SD ++
Sbjct: 302 LEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLA 336
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 246 IDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ +A +YL S VH DL N +LDE V+DF +++
Sbjct: 132 LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLAR 173
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 66/176 (37%), Gaps = 38/176 (21%)
Query: 136 AHQDSKRTSYLDILQATDEFNEWHLLGTESLGSVY-------KWIFLDETNVAIKV-FNL 187
H +SK+ + A ++F LG G+VY K+I +A+KV F
Sbjct: 1 GHXESKKRQW-----ALEDFEIGRPLGKGKFGNVYLAREKQSKFI------LALKVLFKA 49
Query: 188 QLERAF--RSFDSKCEVHKNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNG--------- 236
QLE+A + E+ ++RH N YL P G
Sbjct: 50 QLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRV--YLILEYAPLGTVYRELQKL 107
Query: 237 ---DFPERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
D + ++A A Y H R ++H D+KP N LL ++DF S
Sbjct: 108 SKFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWS 160
>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|B Chain B, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|C Chain C, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|D Chain D, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
Length = 543
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 255 LHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
L H +++ DLKP N LLD+D +SD ++
Sbjct: 302 LEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLA 336
>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In
Complex With P38 Map Kinase
Length = 360
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFYLAR 173
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 246 IDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ +A +YL S VH DL N +LDE V+DF +++
Sbjct: 138 LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLAR 179
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 246 IDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ +A +YL S VH DL N +LDE V+DF +++
Sbjct: 139 LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLAR 180
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 246 IDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ +A +YL S VH DL N +LDE V+DF +++
Sbjct: 140 LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLAR 181
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 240 ERLNIMI-DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+R+ ++ M Y+H + ++H DLKP N ++ED + DF +++
Sbjct: 128 DRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLAR 176
>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580
pdb|3GCQ|A Chain A, Human P38 Map Kinase In Complex With Rl45
pdb|3GCS|A Chain A, Human P38 Map Kinase In Complex With Sorafenib
pdb|3GCV|A Chain A, Human P38 Map Kinase In Complex With Rl62
pdb|3HV3|A Chain A, Human P38 Map Kinase In Complex With Rl49
pdb|3IW5|A Chain A, Human P38 Map Kinase In Complex With An Indole Derivative
pdb|3IW6|A Chain A, Human P38 Map Kinase In Complex With A Benzylpiperazin-
Pyrrol
pdb|3IW7|A Chain A, Human P38 Map Kinase In Complex With An Imidazo-Pyridine
pdb|3IW8|A Chain A, Structure Of Inactive Human P38 Map Kinase In Complex With
A Thiazole-Urea
pdb|3HUB|A Chain A, Human P38 Map Kinase In Complex With Scios-469
pdb|3L8S|A Chain A, Human P38 Map Kinase In Complex With Cp-547632
pdb|3LFB|A Chain A, Human P38 Map Kinase In Complex With Rl98
pdb|3LFC|A Chain A, Human P38 Map Kinase In Complex With Rl99
pdb|3LFD|A Chain A, Human P38 Map Kinase In Complex With Rl113
pdb|3LFE|A Chain A, Human P38 Map Kinase In Complex With Rl116
pdb|3LFF|A Chain A, Human P38 Map Kinase In Complex With Rl166
pdb|3PG3|A Chain A, Human P38 Map Kinase In Complex With Rl182
Length = 360
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + DF + +
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDSELKILDFGLCR 173
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
A +Y H +VH DLK N LLD D ++DF S
Sbjct: 125 AVQYCHQ---KFIVHRDLKAENLLLDADXNIKIADFGFS 160
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 246 IDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ +A +YL S VH DL N +LDE V+DF +++
Sbjct: 159 LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLAR 200
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 246 IDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ +A +YL S VH DL N +LDE V+DF +++
Sbjct: 137 LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLAR 178
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 246 IDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ +A +YL S VH DL N +LDE V+DF +++
Sbjct: 135 LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLAR 176
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 246 IDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ +A +YL S VH DL N +LDE V+DF +++
Sbjct: 139 LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLAR 180
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 243 NIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
I+ ++ +YLH R +H D+K +N LL E ++DF ++ L
Sbjct: 120 TILREILKGLDYLHSERK---IHRDIKAANVLLSEQGDVKLADFGVAGQL 166
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSI 66
+ LF+N ++ P ++NL L L+LS N + IS L LT+L +Q +
Sbjct: 112 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLNFGNQVTD 164
Query: 67 PKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIP 115
K +L +LE LD+SSN +S L L+NL+ L + N++ P
Sbjct: 165 LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 211
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 246 IDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ +A +YL S VH DL N +LDE V+DF +++
Sbjct: 158 LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLAR 199
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 246 IDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+ +A +YL S VH DL N +LDE V+DF +++
Sbjct: 140 LQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLAR 181
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 240 ERLNIMIDMALAFEYLHH-------GRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
E +I MA YLH G + H D+K N LL ++ A ++DF ++
Sbjct: 122 ELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLA 178
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 25/155 (16%)
Query: 153 DEFNEWHLLGTESLGSVYKWIFLDETN---VAIKV-FNLQLER--AFRSFDSKCEVHKNV 206
D+F+ LG G+VY + ++ N +A+KV F QLE+ + E+ ++
Sbjct: 14 DDFDIGRPLGKGKFGNVY--LAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHL 71
Query: 207 RHRNXXXXXXXXXXXXXXPWYLSSCVMPNGDFPERLN------------IMIDMALAFEY 254
RH N YL P G+ + L M ++A A Y
Sbjct: 72 RHPNILRMYNYFHDRKRI--YLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHY 129
Query: 255 LHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
H + ++H D+KP N L+ ++DF S
Sbjct: 130 CHERK---VIHRDIKPENLLMGYKGELKIADFGWS 161
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S+ L
Sbjct: 157 VHRDLAARNILVNSNLVCKVSDFGLSRFL 185
>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8U|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+Y+H S ++H DLKPSN ++ED + D+ +++
Sbjct: 137 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDYGLAR 173
>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex
With Staurosporine
Length = 287
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLLGV 294
VH DL N LL A +SDF +SK LG
Sbjct: 132 VHRDLAARNVLLVNRHYAKISDFGLSKALGA 162
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 25/155 (16%)
Query: 153 DEFNEWHLLGTESLGSVYKWIFLDETN---VAIKV-FNLQLER--AFRSFDSKCEVHKNV 206
D+F+ LG G+VY + ++ N +A+KV F QLE+ + E+ ++
Sbjct: 15 DDFDIGRPLGKGKFGNVY--LAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHL 72
Query: 207 RHRNXXXXXXXXXXXXXXPWYLSSCVMPNGDFPERLN------------IMIDMALAFEY 254
RH N YL P G+ + L M ++A A Y
Sbjct: 73 RHPNILRMYNYFHDRKRI--YLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHY 130
Query: 255 LHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
H + ++H D+KP N L+ ++DF S
Sbjct: 131 CHERK---VIHRDIKPENLLMGYKGELKIADFGWS 162
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSI 66
+ LF+N ++ P ++NL L L+LS N + IS L LT+L +Q +
Sbjct: 112 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLNFGNQVTD 164
Query: 67 PKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIP 115
K +L +LE LD+SSN +S L L+NL+ L + N++ P
Sbjct: 165 LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 211
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF ++++L
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLARVL 197
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 17/67 (25%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNI-----------SKLLGV---LL 296
A E+LH S ++H D+K N LL D ++DF S+++G +
Sbjct: 128 ALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSEMVGTPYWMA 184
Query: 297 PETFTRK 303
PE TRK
Sbjct: 185 PEVVTRK 191
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSI 66
+ LF+N ++ P ++NL L L+LS N + IS L LT+L +Q +
Sbjct: 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLSFGNQVTD 169
Query: 67 PKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIP 115
K +L +LE LD+SSN +S L L+NL+ L + N++ P
Sbjct: 170 LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 216
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF +S+++
Sbjct: 167 VHRDLAARNILVNSNLVCKVSDFGLSRVI 195
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 59/158 (37%), Gaps = 27/158 (17%)
Query: 151 ATDEFNEWHLLGTESLGSVYKWIFLDETN----VAIKV-FNLQLERAF--RSFDSKCEVH 203
A ++F LG G+VY E N +A+KV F QLE+A + E+
Sbjct: 6 ALEDFEIGRPLGKGKFGNVY---LAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQ 62
Query: 204 KNVRHRNXXXXXXXXXXXXXXPWYLSSCVMPNGDFPERLN------------IMIDMALA 251
++RH N YL P G L + ++A A
Sbjct: 63 SHLRHPNILRLYGYFHDSTRV--YLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 120
Query: 252 FEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
Y H S ++H D+KP N LL ++DF S
Sbjct: 121 LSYCH---SKKVIHRDIKPENLLLGSAGELKIADFGWS 155
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 25/155 (16%)
Query: 153 DEFNEWHLLGTESLGSVYKWIFLDETN---VAIKV-FNLQLER--AFRSFDSKCEVHKNV 206
D+F+ LG G+VY + ++ N +A+KV F QLE+ + E+ ++
Sbjct: 14 DDFDIVRPLGKGKFGNVY--LAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHL 71
Query: 207 RHRNXXXXXXXXXXXXXXPWYLSSCVMPNGDFPERLN------------IMIDMALAFEY 254
RH N YL P G+ + L M ++A A Y
Sbjct: 72 RHPNILRMYNYFHDRKRI--YLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHY 129
Query: 255 LHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
H + ++H D+KP N L+ ++DF S
Sbjct: 130 CHERK---VIHRDIKPENLLMGYKGELKIADFGWS 161
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 7 INLFSNSLSGSLPSNIQNLKVLIGLDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSI 66
+ LF+N ++ P ++NL L L+LS N + IS L LT+L +Q +
Sbjct: 116 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLSFGNQVTD 168
Query: 67 PKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIP 115
K +L +LE LD+SSN +S L L+NL+ L + N++ P
Sbjct: 169 LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 215
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
++ L ++LH S +V+ DLK N LLD+D ++DF + K
Sbjct: 126 EIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCK 166
>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
pdb|3RNY|B Chain B, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
Length = 346
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 244 IMIDMALAFEYLHHGRSTPMVHCDLKPSNNL-LDED---MVAHVSDFNISKLL----GVL 295
++ + EYLH S +VH DLKPSN L +DE + DF +K L G+L
Sbjct: 126 VLHTIGKTVEYLH---SQGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENGLL 182
Query: 296 LPETFT 301
+ +T
Sbjct: 183 MTPCYT 188
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 43 PITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLS--------GKIPKSL 94
P L++LT L L+ N E L LE LDL NNL+ G L
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532
Query: 95 EALSNLKELNVSYNRLEGEIPTNV 118
+ LS+L LN+ N + EIP V
Sbjct: 533 KGLSHLHILNLESNGFD-EIPVEV 555
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 238 FPERLNIMIDMALAFEYLH---HGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG- 293
FP L+ + F+ ++ S ++H D+KP N L+ + V + DF ++ L
Sbjct: 117 FPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAA 176
Query: 294 ---VLLPETFTRKKPTIEMIIG 312
V E TR E+++G
Sbjct: 177 PGEVYDDEVATRWYRAPELLVG 198
>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution.
pdb|2JED|B Chain B, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution
Length = 352
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
++ L ++LH S +V+ DLK N LLD+D ++DF + K
Sbjct: 127 EIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCK 167
>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric
Inhibitor
Length = 446
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
A +YLH ++ +V+ DLK N +LD+D ++DF + K
Sbjct: 263 ALDYLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCK 300
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex
With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
A +YLH ++ +V+ DLK N +LD+D ++DF + K
Sbjct: 260 ALDYLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCK 297
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 239 PER-LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG 293
P+R + ++ D A + H ++H D+KP+N L+ V DF I++ +
Sbjct: 115 PKRAIEVIADACQALNFSHQNG---IIHRDVKPANILISATNAVKVVDFGIARAIA 167
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 244 IMIDMALAFEYLHHGRSTPMVHCDLKPSNNL-LDED---MVAHVSDFNISKLL----GVL 295
++ + EYLH S +VH DLKPSN L +DE + DF +K L G+L
Sbjct: 126 VLHTIGKTVEYLH---SQGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENGLL 182
Query: 296 LPETFT 301
+ +T
Sbjct: 183 MTPCYT 188
>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid-
Regulated Kinase 1 In Complex With Amp-Pnp
pdb|3HDM|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 1
pdb|3HDN|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 2
Length = 373
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 247 DMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
++A A YLH S +V+ DLKP N LLD ++DF + K
Sbjct: 147 EIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCK 187
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 245 MIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
+ ++A A Y H R ++H D+KP N LL + ++DF S
Sbjct: 118 ITELANALSYCHSKR---VIHRDIKPENLLLGSNGELKIADFGWS 159
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 242 LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNI 288
L + + +Y+H S ++H DLKPSN L + + DF +
Sbjct: 139 LELFEQITKGVDYIH---SKKLIHRDLKPSNIFLVDTKQVKIGDFGL 182
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 264 VHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
VH DL N L++ ++V VSDF + ++L
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLGRVL 197
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
YLH + +H DL N LLD D + + DF ++K
Sbjct: 149 YLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAK 182
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 43 PITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLS--------GKIPKSL 94
P L++LT L L+ N E L LE LDL NNL+ G L
Sbjct: 478 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 537
Query: 95 EALSNLKELNVSYNRLEGEIPTNV 118
+ LS+L LN+ N + EIP V
Sbjct: 538 KGLSHLHILNLESNGFD-EIPVEV 560
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 43 PITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLS--------GKIPKSL 94
P L++LT L L+ N E L LE LDL NNL+ G L
Sbjct: 483 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 542
Query: 95 EALSNLKELNVSYNRLEGEIPTNV 118
+ LS+L LN+ N + EIP V
Sbjct: 543 KGLSHLHILNLESNGFD-EIPVEV 565
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 245 MIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
+ ++A A Y H R ++H D+KP N LL + ++DF S
Sbjct: 118 ITELANALSYCHSKR---VIHRDIKPENLLLGSNGELKIADFGWS 159
>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|A Chain A, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|B Chain B, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|3O0G|A Chain A, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
pdb|3O0G|B Chain B, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
Length = 292
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 227 YLSSCVMPNGDF-PERLNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSD 285
Y SC NGD PE + + L H R+ ++H DLKP N L++ + +++
Sbjct: 90 YFDSC---NGDLDPEIVKSFLFQLLKGLGFCHSRN--VLHRDLKPQNLLINRNGELKLAN 144
Query: 286 FNISKLLGV 294
F +++ G+
Sbjct: 145 FGLARAFGI 153
>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363
Length = 340
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
A +YLH ++ +V+ DLK N +LD+D ++DF + K
Sbjct: 120 ALDYLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCK 157
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 31 LDLSINRLYGDIPITISGLKDLTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKI 90
L+L N+L L LT L L+ N+ Q F+ L L L L N L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 91 PKSLEALSNLKELNVSYNRLEGEIPTNVPFGNF 123
+ L+ LKEL + N+L+ +VP G F
Sbjct: 93 NGVFDKLTQLKELALDTNQLK-----SVPDGIF 120
>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OCB|B Chain B, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OW4|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3OW4|B Chain B, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3QKK|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKL|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKM|A Chain A, Spirocyclic Sulfonamides As Akt Inhibitors
pdb|4EKK|A Chain A, Akt1 With Amp-Pnp
pdb|4EKK|B Chain B, Akt1 With Amp-Pnp
pdb|4EKL|A Chain A, Akt1 With Gdc0068
Length = 341
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
A +YLH ++ +V+ DLK N +LD+D ++DF + K
Sbjct: 121 ALDYLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCK 158
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 257 HGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
HG + ++H DLKPSN L++ + V DF +++++
Sbjct: 129 HGSN--VIHRDLKPSNLLINSNCDLKVCDFGLARII 162
>pdb|3JS4|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
Length = 227
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 126 QSFISNYALCAHQDSKRTSYLDILQATDEFNEWHLLGTESLGSV 169
+ +IS++ L H + +Y+D+L E+ LG ESLG +
Sbjct: 34 EPYISSHLLDRHYNGHHKTYVDVLNKLVVGTEFEGLGNESLGDI 77
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 257 HGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
HG + ++H DLKPSN L++ + V DF +++++
Sbjct: 129 HGSN--VIHRDLKPSNLLINSNCDLKVCDFGLARII 162
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 257 HGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
HG + ++H DLKPSN L++ + V DF +++++
Sbjct: 129 HGSN--VIHRDLKPSNLLINSNCDLKVCDFGLARII 162
>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3CQW|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3MV5|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
pdb|3MVH|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
Length = 342
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 251 AFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
A +YLH ++ +V+ DLK N +LD+D ++DF + K
Sbjct: 122 ALDYLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCK 159
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 225 PWYLSSCVMPNGDFPERLN------IMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDED 278
P L C P+ + E+L+ +A EYL S +H DL N L+ ED
Sbjct: 115 PPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTED 171
Query: 279 MVAHVSDFNISK 290
V ++DF +++
Sbjct: 172 NVMKIADFGLAR 183
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 155
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 155
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 69 SFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRLEGEIPTNVPFGNF 123
SF+ L LE L LS N++ + L+NL L + NRL T +P G F
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-----TTIPNGAF 132
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 155
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 155
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 155
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 118 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 153
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 240 ERLNIMIDMALAFEYLHH--------GRSTPMVHCDLKPSNNLLDEDMVAHVSDFNIS 289
E ++ M+ YLH G + H D K N LL D+ A ++DF ++
Sbjct: 113 ELCHVAETMSRGLSYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLA 170
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 239 PER-LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG 293
P+R + ++ D A + H ++H D+KP+N ++ V DF I++ +
Sbjct: 115 PKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIA 167
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 248 MALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISK 290
+A EYL S +H DL N L+ ED V ++DF +++
Sbjct: 159 VARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLAR 198
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 155
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 239 PER-LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG 293
P+R + ++ D A + H ++H D+KP+N ++ V DF I++ +
Sbjct: 115 PKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIA 167
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 155
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 119 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 239 PER-LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG 293
P+R + ++ D A + H ++H D+KP+N ++ V DF I++ +
Sbjct: 115 PKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIA 167
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 52 LTTLFLAGNRSQGSIPKSFESLASLEFLDLSSNNLSGKIPKSLEALSNLKELNVSYNRL 110
LT L L GN+ S + L +L L LS N++S SL +L+EL+++ N+L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 239 PER-LNIMIDMALAFEYLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLLG 293
P+R + ++ D A + H ++H D+KP+N ++ V DF I++ +
Sbjct: 115 PKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIA 167
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 254 YLHHGRSTPMVHCDLKPSNNLLDEDMVAHVSDFNISKLL 292
YLH + H D+KP N LLDE +SDF ++ +
Sbjct: 120 YLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,753,774
Number of Sequences: 62578
Number of extensions: 346498
Number of successful extensions: 2086
Number of sequences better than 100.0: 692
Number of HSP's better than 100.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 232
Number of HSP's that attempted gapping in prelim test: 1251
Number of HSP's gapped (non-prelim): 944
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)