Query 036267
Match_columns 145
No_of_seqs 119 out of 1724
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 11:01:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02770 haloacid dehalogenase 100.0 4.9E-29 1.1E-33 178.1 15.8 139 4-142 105-243 (248)
2 PRK13288 pyrophosphatase PpaX; 100.0 5E-27 1.1E-31 164.3 14.3 128 4-131 79-207 (214)
3 TIGR01422 phosphonatase phosph 100.0 3.5E-27 7.6E-32 168.9 13.7 128 4-131 96-249 (253)
4 COG0546 Gph Predicted phosphat 99.9 6.7E-27 1.4E-31 164.4 13.6 126 6-131 88-214 (220)
5 PRK13478 phosphonoacetaldehyde 99.9 1.4E-26 3E-31 167.0 15.0 142 4-145 98-267 (267)
6 TIGR01454 AHBA_synth_RP 3-amin 99.9 1E-26 2.2E-31 161.7 13.7 128 4-131 72-200 (205)
7 PRK10826 2-deoxyglucose-6-phos 99.9 1.2E-26 2.7E-31 163.1 12.6 133 4-136 89-221 (222)
8 TIGR01449 PGP_bact 2-phosphogl 99.9 2.3E-26 5E-31 160.5 13.6 127 5-131 83-210 (213)
9 PLN03243 haloacid dehalogenase 99.9 3.5E-26 7.7E-31 164.2 14.3 130 4-135 106-235 (260)
10 PLN02575 haloacid dehalogenase 99.9 8.7E-26 1.9E-30 168.2 15.4 130 4-135 213-342 (381)
11 PRK13226 phosphoglycolate phos 99.9 4.9E-26 1.1E-30 160.9 13.0 127 4-130 92-220 (229)
12 TIGR03351 PhnX-like phosphonat 99.9 9.7E-26 2.1E-30 158.2 13.5 128 4-131 84-216 (220)
13 TIGR02253 CTE7 HAD superfamily 99.9 8.9E-26 1.9E-30 158.4 13.1 126 5-130 92-220 (221)
14 PRK11587 putative phosphatase; 99.9 7.9E-25 1.7E-29 153.6 13.4 125 4-131 80-204 (218)
15 PRK14988 GMP/IMP nucleotidase; 99.9 2.6E-25 5.7E-30 156.7 10.9 109 4-112 90-199 (224)
16 TIGR01428 HAD_type_II 2-haloal 99.9 9.3E-25 2E-29 151.0 12.8 106 5-110 90-195 (198)
17 TIGR00213 GmhB_yaeD D,D-heptos 99.9 1E-24 2.2E-29 148.6 12.7 125 4-130 23-174 (176)
18 PRK06769 hypothetical protein; 99.9 5E-25 1.1E-29 149.6 10.4 129 4-132 25-169 (173)
19 PRK13223 phosphoglycolate phos 99.9 2.4E-24 5.3E-29 155.7 14.3 127 5-131 99-226 (272)
20 PRK13222 phosphoglycolate phos 99.9 3.5E-24 7.7E-29 150.6 14.4 129 5-133 91-220 (226)
21 PRK09449 dUMP phosphatase; Pro 99.9 2.1E-24 4.6E-29 151.8 12.6 125 5-131 93-219 (224)
22 TIGR02254 YjjG/YfnB HAD superf 99.9 4E-24 8.6E-29 150.1 12.6 125 5-131 95-221 (224)
23 PLN02811 hydrolase 99.9 3.3E-24 7.2E-29 150.7 11.8 129 5-134 76-210 (220)
24 PLN02940 riboflavin kinase 99.9 5.3E-24 1.2E-28 160.3 13.7 129 5-134 91-220 (382)
25 PLN02779 haloacid dehalogenase 99.9 8.1E-24 1.8E-28 153.9 13.5 128 6-135 143-273 (286)
26 PRK13225 phosphoglycolate phos 99.9 2.5E-23 5.3E-28 150.4 14.5 125 4-131 139-264 (273)
27 PRK08942 D,D-heptose 1,7-bisph 99.9 2.6E-23 5.7E-28 142.1 13.8 126 4-131 26-173 (181)
28 PF13419 HAD_2: Haloacid dehal 99.9 3.1E-23 6.8E-28 139.6 12.2 103 4-106 74-176 (176)
29 PLN02919 haloacid dehalogenase 99.9 1.1E-22 2.3E-27 168.6 16.1 134 7-140 161-295 (1057)
30 COG1011 Predicted hydrolase (H 99.9 7.6E-23 1.6E-27 144.0 12.5 125 5-130 97-222 (229)
31 TIGR01990 bPGM beta-phosphoglu 99.9 7.7E-23 1.7E-27 139.8 11.3 100 6-107 86-185 (185)
32 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 2.2E-22 4.8E-27 137.1 12.6 100 6-106 84-183 (183)
33 COG0637 Predicted phosphatase/ 99.9 7.3E-23 1.6E-27 144.0 10.3 109 3-111 82-190 (221)
34 TIGR01691 enolase-ppase 2,3-di 99.9 2.4E-22 5.3E-27 140.8 12.8 123 5-129 93-219 (220)
35 TIGR02009 PGMB-YQAB-SF beta-ph 99.9 1.3E-22 2.8E-27 138.7 10.8 101 4-106 85-185 (185)
36 PRK09456 ?-D-glucose-1-phospha 99.9 1.9E-22 4E-27 139.8 11.5 107 6-112 83-190 (199)
37 TIGR01261 hisB_Nterm histidino 99.9 2.3E-22 5E-27 134.9 11.4 104 4-109 26-149 (161)
38 TIGR02252 DREG-2 REG-2-like, H 99.9 1.8E-22 3.9E-27 140.1 11.0 100 5-105 103-203 (203)
39 PRK10563 6-phosphogluconate ph 99.9 8.2E-23 1.8E-27 143.5 9.2 124 4-131 85-209 (221)
40 PRK10748 flavin mononucleotide 99.9 3.3E-22 7.1E-27 142.1 11.3 121 5-131 111-235 (238)
41 TIGR01685 MDP-1 magnesium-depe 99.9 2.9E-22 6.3E-27 135.5 10.1 112 3-114 41-164 (174)
42 TIGR01656 Histidinol-ppas hist 99.9 4.1E-22 8.9E-27 132.0 10.4 105 5-109 25-147 (147)
43 TIGR02247 HAD-1A3-hyp Epoxide 99.9 2.5E-22 5.5E-27 140.1 9.6 105 5-109 92-198 (211)
44 PRK06698 bifunctional 5'-methy 99.9 1.2E-21 2.5E-26 150.9 14.1 124 4-131 327-450 (459)
45 PRK10725 fructose-1-P/6-phosph 99.9 2.8E-21 6.1E-26 132.5 11.2 102 4-107 85-186 (188)
46 TIGR01993 Pyr-5-nucltdase pyri 99.9 2.5E-21 5.5E-26 132.5 10.4 99 5-106 82-184 (184)
47 TIGR01662 HAD-SF-IIIA HAD-supe 99.9 1.7E-20 3.6E-25 122.1 11.5 99 5-107 23-131 (132)
48 TIGR01549 HAD-SF-IA-v1 haloaci 99.8 1.3E-19 2.8E-24 120.6 11.0 93 5-100 62-154 (154)
49 TIGR01664 DNA-3'-Pase DNA 3'-p 99.8 9.3E-20 2E-24 122.9 10.0 99 5-105 39-160 (166)
50 KOG3085 Predicted hydrolase (H 99.8 3.8E-20 8.3E-25 129.6 8.1 106 4-110 110-216 (237)
51 TIGR01548 HAD-SF-IA-hyp1 haloa 99.8 2.4E-19 5.1E-24 124.0 11.7 92 7-99 106-197 (197)
52 TIGR01668 YqeG_hyp_ppase HAD s 99.8 2.3E-19 5E-24 121.6 11.3 101 4-113 40-142 (170)
53 PRK05446 imidazole glycerol-ph 99.8 1.6E-18 3.4E-23 128.7 13.3 105 3-109 26-150 (354)
54 PHA02597 30.2 hypothetical pro 99.8 6.3E-19 1.4E-23 121.8 9.8 118 4-130 71-194 (197)
55 PHA02530 pseT polynucleotide k 99.8 1.7E-18 3.6E-23 126.8 10.5 105 5-109 185-298 (300)
56 TIGR01452 PGP_euk phosphoglyco 99.8 4.9E-19 1.1E-23 128.6 5.7 122 8-130 144-279 (279)
57 TIGR01493 HAD-SF-IA-v2 Haloaci 99.8 7.1E-19 1.5E-23 119.3 5.5 88 5-99 88-175 (175)
58 TIGR00338 serB phosphoserine p 99.8 1.7E-17 3.7E-22 116.3 12.7 118 5-127 83-210 (219)
59 TIGR01672 AphA HAD superfamily 99.8 1.1E-17 2.5E-22 118.2 11.6 101 5-112 112-216 (237)
60 cd01427 HAD_like Haloacid deha 99.8 1.5E-17 3.3E-22 107.3 10.9 102 5-106 22-139 (139)
61 smart00577 CPDc catalytic doma 99.8 2.5E-18 5.3E-23 114.1 7.2 95 5-103 43-138 (148)
62 PLN02954 phosphoserine phospha 99.8 2.3E-17 5.1E-22 116.0 12.3 125 5-131 82-220 (224)
63 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.8 1.6E-17 3.4E-22 114.8 11.0 105 5-109 78-192 (201)
64 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.7 9.9E-19 2.2E-23 125.6 4.4 124 8-131 121-251 (257)
65 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.7 8.3E-17 1.8E-21 115.1 14.0 70 61-130 176-249 (249)
66 PRK10444 UMP phosphatase; Prov 99.7 9.8E-17 2.1E-21 114.6 13.1 70 61-130 172-245 (248)
67 KOG2914 Predicted haloacid-hal 99.7 5.1E-17 1.1E-21 113.4 11.0 127 4-131 89-219 (222)
68 PF13242 Hydrolase_like: HAD-h 99.7 2.3E-17 5.1E-22 97.3 6.6 70 61-130 2-75 (75)
69 COG0241 HisB Histidinol phosph 99.7 2.6E-16 5.6E-21 106.4 12.3 127 3-131 27-173 (181)
70 PRK09552 mtnX 2-hydroxy-3-keto 99.7 9.5E-17 2.1E-21 112.8 9.5 124 4-131 71-209 (219)
71 COG0647 NagD Predicted sugar p 99.7 3.2E-16 7E-21 112.3 12.0 72 60-131 187-262 (269)
72 PRK11009 aphA acid phosphatase 99.7 4E-16 8.6E-21 110.4 12.0 100 4-112 111-216 (237)
73 TIGR01670 YrbI-phosphatas 3-de 99.7 2.9E-16 6.2E-21 104.8 10.5 111 15-138 36-147 (154)
74 PRK11133 serB phosphoserine ph 99.7 5.4E-16 1.2E-20 114.4 12.4 118 4-126 178-305 (322)
75 TIGR01681 HAD-SF-IIIC HAD-supe 99.7 1.5E-16 3.3E-21 103.0 7.3 88 7-98 29-126 (128)
76 PRK13582 thrH phosphoserine ph 99.7 6.9E-16 1.5E-20 107.1 10.7 123 4-131 65-192 (205)
77 TIGR02726 phenyl_P_delta pheny 99.7 2.1E-15 4.5E-20 101.8 10.7 102 15-129 42-143 (169)
78 COG2179 Predicted hydrolase of 99.6 1.8E-15 3.9E-20 99.7 8.4 93 7-108 46-139 (175)
79 TIGR03333 salvage_mtnX 2-hydro 99.6 3.2E-15 7E-20 104.7 9.5 123 5-130 68-204 (214)
80 TIGR01489 DKMTPPase-SF 2,3-dik 99.6 4.8E-15 1E-19 101.3 9.6 95 5-102 70-184 (188)
81 PF00702 Hydrolase: haloacid d 99.6 2.3E-15 5E-20 104.7 8.2 91 5-100 125-215 (215)
82 KOG3109 Haloacid dehalogenase- 99.6 7.3E-15 1.6E-19 100.7 9.2 104 5-110 98-208 (244)
83 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.6 7.6E-16 1.6E-20 109.8 4.6 99 9-108 140-242 (242)
84 PLN02645 phosphoglycolate phos 99.6 7.1E-16 1.5E-20 113.6 4.4 119 13-131 176-304 (311)
85 PRK09484 3-deoxy-D-manno-octul 99.6 1.2E-14 2.7E-19 99.5 9.7 99 14-125 55-153 (183)
86 TIGR01544 HAD-SF-IE haloacid d 99.6 1E-13 2.2E-18 99.8 11.9 113 4-116 118-251 (277)
87 TIGR01686 FkbH FkbH-like domai 99.5 3.4E-14 7.3E-19 105.1 9.2 91 7-102 31-125 (320)
88 TIGR02137 HSK-PSP phosphoserin 99.5 1.7E-13 3.6E-18 95.3 12.1 118 5-131 66-192 (203)
89 TIGR01663 PNK-3'Pase polynucle 99.5 4E-14 8.7E-19 110.0 9.8 95 5-101 194-305 (526)
90 TIGR02244 HAD-IG-Ncltidse HAD 99.5 3.1E-13 6.8E-18 100.0 10.8 104 5-108 182-324 (343)
91 TIGR01512 ATPase-IB2_Cd heavy 99.5 2.2E-13 4.8E-18 107.0 10.7 114 5-132 360-476 (536)
92 TIGR01488 HAD-SF-IB Haloacid D 99.5 2.8E-13 6E-18 91.8 9.7 96 4-99 70-177 (177)
93 KOG2882 p-Nitrophenyl phosphat 99.5 5.3E-13 1.1E-17 95.7 10.7 70 61-130 222-299 (306)
94 TIGR01525 ATPase-IB_hvy heavy 99.5 5E-13 1.1E-17 105.4 10.6 111 5-130 382-495 (556)
95 TIGR02251 HIF-SF_euk Dullard-l 99.4 9.5E-14 2E-18 93.4 4.7 104 6-113 41-145 (162)
96 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.4 5.7E-13 1.2E-17 92.3 8.6 101 6-106 86-197 (202)
97 KOG3040 Predicted sugar phosph 99.4 5.9E-13 1.3E-17 90.9 7.9 74 61-134 179-256 (262)
98 COG4229 Predicted enolase-phos 99.4 2.3E-12 5.1E-17 86.3 9.3 121 5-128 101-224 (229)
99 PF08645 PNK3P: Polynucleotide 99.4 2.9E-12 6.3E-17 85.8 8.9 100 3-104 24-153 (159)
100 PF12689 Acid_PPase: Acid Phos 99.4 1.4E-11 3.1E-16 82.9 11.5 109 3-116 41-160 (169)
101 PRK08238 hypothetical protein; 99.3 2.7E-11 5.8E-16 93.8 12.7 101 3-110 68-168 (479)
102 TIGR01511 ATPase-IB1_Cu copper 99.3 8.4E-12 1.8E-16 98.6 9.9 111 5-131 403-515 (562)
103 TIGR01522 ATPase-IIA2_Ca golgi 99.3 1E-11 2.3E-16 102.5 10.5 123 6-131 527-667 (884)
104 PTZ00445 p36-lilke protein; Pr 99.3 1.6E-11 3.6E-16 84.5 9.7 102 8-109 76-207 (219)
105 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.3 1.3E-11 2.8E-16 88.0 8.1 93 4-101 21-116 (242)
106 TIGR01460 HAD-SF-IIA Haloacid 99.3 7.2E-11 1.6E-15 83.9 11.3 49 61-109 186-236 (236)
107 PRK10671 copA copper exporting 99.3 3.8E-11 8.2E-16 98.8 10.9 112 6-131 649-761 (834)
108 COG0560 SerB Phosphoserine pho 99.3 5.9E-11 1.3E-15 83.0 10.0 101 6-106 76-186 (212)
109 PRK10530 pyridoxal phosphate ( 99.2 1.6E-10 3.5E-15 83.4 9.2 127 9-139 139-270 (272)
110 COG4087 Soluble P-type ATPase 99.2 4.3E-10 9.3E-15 71.6 9.2 121 4-137 27-147 (152)
111 PF09419 PGP_phosphatase: Mito 99.2 7.2E-10 1.6E-14 74.5 10.1 97 3-109 55-166 (168)
112 PRK01158 phosphoglycolate phos 99.1 2.8E-09 6.1E-14 75.1 11.9 129 7-139 20-228 (230)
113 TIGR01482 SPP-subfamily Sucros 99.1 3.1E-09 6.7E-14 74.7 11.8 129 7-139 15-224 (225)
114 TIGR01456 CECR5 HAD-superfamil 99.1 2.3E-10 5E-15 84.8 6.0 72 60-131 230-317 (321)
115 PRK11033 zntA zinc/cadmium/mer 99.1 2.4E-09 5.2E-14 87.2 11.6 109 6-131 567-677 (741)
116 PF06888 Put_Phosphatase: Puta 99.1 2.5E-09 5.5E-14 75.6 10.2 113 4-116 68-206 (234)
117 TIGR01487 SPP-like sucrose-pho 99.0 7.6E-09 1.7E-13 72.4 11.0 123 6-132 17-211 (215)
118 TIGR01116 ATPase-IIA1_Ca sarco 99.0 8.9E-09 1.9E-13 85.6 11.8 120 7-130 537-678 (917)
119 TIGR01533 lipo_e_P4 5'-nucleot 99.0 1.1E-08 2.4E-13 73.8 10.3 89 3-98 114-206 (266)
120 PRK10513 sugar phosphate phosp 99.0 3.3E-08 7.2E-13 71.4 12.7 67 69-139 201-267 (270)
121 PRK14010 potassium-transportin 98.9 1.7E-08 3.6E-13 81.1 10.1 103 7-124 441-543 (673)
122 COG1778 Low specificity phosph 98.9 2.8E-09 6.1E-14 69.9 4.3 82 16-106 44-125 (170)
123 COG2217 ZntA Cation transport 98.8 3.1E-08 6.7E-13 79.9 10.1 110 6-131 536-648 (713)
124 PRK01122 potassium-transportin 98.8 2.7E-08 5.9E-13 80.0 9.2 103 7-124 445-547 (679)
125 KOG2630 Enolase-phosphatase E- 98.8 4.4E-08 9.6E-13 68.1 8.7 122 7-130 123-248 (254)
126 TIGR01684 viral_ppase viral ph 98.8 2.3E-08 4.9E-13 72.5 7.4 63 6-68 144-207 (301)
127 TIGR01497 kdpB K+-transporting 98.8 3.4E-08 7.4E-13 79.3 9.2 103 7-124 446-548 (675)
128 PF08282 Hydrolase_3: haloacid 98.8 2.2E-07 4.8E-12 65.6 12.4 125 5-133 13-251 (254)
129 PF12710 HAD: haloacid dehalog 98.8 3E-08 6.5E-13 67.8 7.0 89 8-97 86-192 (192)
130 PRK15126 thiamin pyrimidine py 98.8 2E-07 4.3E-12 67.5 11.4 68 69-140 193-262 (272)
131 TIGR02250 FCP1_euk FCP1-like p 98.8 4.5E-08 9.8E-13 65.4 7.3 90 5-100 56-147 (156)
132 PF05761 5_nucleotid: 5' nucle 98.8 8.7E-08 1.9E-12 73.7 9.7 104 6-109 182-326 (448)
133 TIGR01517 ATPase-IIB_Ca plasma 98.8 7.9E-08 1.7E-12 80.3 10.2 121 7-130 579-717 (941)
134 COG0561 Cof Predicted hydrolas 98.7 2.4E-07 5.1E-12 66.8 11.2 133 4-140 17-261 (264)
135 PRK15122 magnesium-transportin 98.7 1.1E-07 2.4E-12 79.1 10.5 117 7-129 550-684 (903)
136 PRK10976 putative hydrolase; P 98.7 2.1E-07 4.5E-12 67.1 10.4 67 69-139 195-263 (266)
137 PLN02645 phosphoglycolate phos 98.7 2.5E-07 5.4E-12 68.4 10.9 90 7-105 44-136 (311)
138 COG4996 Predicted phosphatase 98.7 7.9E-08 1.7E-12 61.4 6.7 90 3-97 37-133 (164)
139 KOG1615 Phosphoserine phosphat 98.7 1.3E-07 2.9E-12 64.3 7.9 94 3-98 84-191 (227)
140 TIGR01523 ATPase-IID_K-Na pota 98.7 1.4E-07 3.1E-12 79.4 9.8 121 7-130 646-794 (1053)
141 TIGR01485 SPP_plant-cyano sucr 98.7 9E-07 1.9E-11 63.4 12.7 76 62-139 165-246 (249)
142 PRK10517 magnesium-transportin 98.7 1.5E-07 3.3E-12 78.2 9.5 112 7-124 550-677 (902)
143 TIGR00099 Cof-subfamily Cof su 98.7 6.7E-07 1.5E-11 64.1 11.7 60 69-132 193-252 (256)
144 TIGR01647 ATPase-IIIA_H plasma 98.7 1.1E-07 2.4E-12 77.7 8.5 112 6-124 441-574 (755)
145 TIGR01524 ATPase-IIIB_Mg magne 98.7 1.7E-07 3.6E-12 77.8 9.4 113 6-124 514-642 (867)
146 COG4359 Uncharacterized conser 98.6 1.3E-07 2.9E-12 63.8 6.9 90 5-100 71-179 (220)
147 PRK11590 hypothetical protein; 98.6 9.9E-07 2.1E-11 61.7 10.2 96 6-102 94-198 (211)
148 COG0474 MgtA Cation transport 98.6 6.1E-07 1.3E-11 74.8 10.2 103 5-110 545-665 (917)
149 TIGR01106 ATPase-IIC_X-K sodiu 98.6 5.4E-07 1.2E-11 75.8 9.5 118 6-126 567-726 (997)
150 KOG0202 Ca2+ transporting ATPa 98.5 4.6E-07 1E-11 73.2 7.8 115 7-124 584-718 (972)
151 PF13344 Hydrolase_6: Haloacid 98.5 2.3E-06 4.9E-11 53.1 8.2 86 5-101 12-100 (101)
152 PRK00192 mannosyl-3-phosphogly 98.4 3E-06 6.6E-11 61.4 9.9 113 19-140 144-270 (273)
153 KOG3120 Predicted haloacid deh 98.4 1.3E-06 2.8E-11 60.7 7.2 113 4-116 81-219 (256)
154 PHA03398 viral phosphatase sup 98.4 9.1E-07 2E-11 64.4 6.8 56 4-59 144-200 (303)
155 TIGR02463 MPGP_rel mannosyl-3- 98.4 2.6E-06 5.6E-11 59.8 8.9 70 30-104 146-219 (221)
156 TIGR02471 sucr_syn_bact_C sucr 98.4 2.8E-06 6.1E-11 60.3 9.1 110 24-139 113-234 (236)
157 TIGR01545 YfhB_g-proteo haloac 98.3 1.3E-05 2.8E-10 56.2 10.0 96 6-102 93-197 (210)
158 TIGR01675 plant-AP plant acid 98.3 1E-05 2.2E-10 57.2 9.5 99 3-104 116-219 (229)
159 KOG0207 Cation transport ATPas 98.2 1.6E-05 3.5E-10 65.0 10.3 90 6-109 722-811 (951)
160 TIGR00685 T6PP trehalose-phosp 98.2 5.3E-06 1.2E-10 59.3 6.2 68 66-140 169-243 (244)
161 TIGR01657 P-ATPase-V P-type AT 98.1 3.4E-05 7.5E-10 65.5 10.6 42 6-47 655-696 (1054)
162 TIGR01652 ATPase-Plipid phosph 98.1 1.4E-05 3.1E-10 67.8 8.0 123 6-131 630-816 (1057)
163 TIGR01452 PGP_euk phosphoglyco 98.1 5.9E-05 1.3E-09 55.0 10.0 88 7-104 18-108 (279)
164 PLN02887 hydrolase family prot 98.1 1.1E-05 2.3E-10 64.3 6.4 70 66-139 509-578 (580)
165 PRK10187 trehalose-6-phosphate 98.1 0.00012 2.6E-09 53.1 11.2 65 67-140 177-244 (266)
166 TIGR01494 ATPase_P-type ATPase 98.0 5.3E-05 1.2E-09 59.5 9.3 83 6-102 346-428 (499)
167 KOG2470 Similar to IMP-GMP spe 98.0 1.4E-05 3.1E-10 59.2 5.1 100 9-108 242-376 (510)
168 PF03031 NIF: NLI interacting 98.0 1E-05 2.2E-10 54.0 4.0 92 5-100 34-126 (159)
169 TIGR02461 osmo_MPG_phos mannos 98.0 0.00025 5.3E-09 50.2 11.1 43 7-49 15-57 (225)
170 TIGR01486 HAD-SF-IIB-MPGP mann 97.9 9.3E-05 2E-09 53.2 8.4 75 62-139 174-255 (256)
171 PRK03669 mannosyl-3-phosphogly 97.9 4E-05 8.7E-10 55.6 6.4 73 65-140 188-268 (271)
172 PLN03190 aminophospholipid tra 97.8 6E-05 1.3E-09 64.6 7.4 41 6-46 725-765 (1178)
173 COG5610 Predicted hydrolase (H 97.8 0.00011 2.3E-09 56.4 7.5 102 5-106 95-201 (635)
174 PF06941 NT5C: 5' nucleotidase 97.8 0.00011 2.4E-09 50.6 6.7 108 4-134 70-185 (191)
175 smart00775 LNS2 LNS2 domain. T 97.8 0.00079 1.7E-08 45.0 10.2 94 7-102 27-141 (157)
176 PF03767 Acid_phosphat_B: HAD 97.7 4.1E-05 8.8E-10 54.3 3.8 93 4-98 112-210 (229)
177 TIGR01680 Veg_Stor_Prot vegeta 97.7 0.00047 1E-08 49.9 9.0 94 3-97 141-239 (275)
178 TIGR01484 HAD-SF-IIB HAD-super 97.6 9.4E-05 2E-09 51.2 4.8 43 62-104 161-203 (204)
179 PF05116 S6PP: Sucrose-6F-phos 97.6 0.00089 1.9E-08 48.0 9.8 44 65-109 166-209 (247)
180 TIGR01658 EYA-cons_domain eyes 97.5 0.001 2.2E-08 47.2 8.7 81 26-110 178-260 (274)
181 COG3700 AphA Acid phosphatase 97.5 0.00086 1.9E-08 45.5 7.9 92 12-110 119-214 (237)
182 COG2503 Predicted secreted aci 97.5 0.00099 2.1E-08 47.3 8.2 89 3-98 118-211 (274)
183 KOG0204 Calcium transporting A 97.5 0.00079 1.7E-08 55.3 8.3 116 6-124 646-779 (1034)
184 KOG2961 Predicted hydrolase (H 97.4 0.0054 1.2E-07 40.6 9.8 98 3-110 57-170 (190)
185 PF05822 UMPH-1: Pyrimidine 5' 97.3 0.00051 1.1E-08 49.0 5.2 114 3-116 86-219 (246)
186 COG2216 KdpB High-affinity K+ 97.2 0.0016 3.5E-08 50.9 6.9 83 8-101 448-530 (681)
187 PRK14501 putative bifunctional 97.0 0.0062 1.3E-07 50.2 9.4 57 77-140 668-724 (726)
188 TIGR01458 HAD-SF-IIA-hyp3 HAD- 97.0 0.0012 2.6E-08 47.6 4.5 49 8-56 22-73 (257)
189 PF11019 DUF2608: Protein of u 96.9 0.028 6.1E-07 40.5 10.7 103 8-110 82-212 (252)
190 PLN02382 probable sucrose-phos 96.7 0.0043 9.4E-08 47.8 5.4 46 64-109 175-223 (413)
191 PRK00192 mannosyl-3-phosphogly 96.6 0.006 1.3E-07 44.2 5.7 45 6-50 20-64 (273)
192 TIGR02245 HAD_IIID1 HAD-superf 96.4 0.031 6.7E-07 38.8 7.7 92 6-102 44-151 (195)
193 KOG3107 Predicted haloacid deh 96.4 0.047 1E-06 41.4 9.0 82 24-110 371-454 (468)
194 KOG0323 TFIIF-interacting CTD 96.4 0.016 3.4E-07 46.8 6.9 54 5-59 199-254 (635)
195 COG4030 Uncharacterized protei 96.3 0.11 2.4E-06 36.9 10.2 42 4-46 80-121 (315)
196 COG3882 FkbH Predicted enzyme 96.3 0.043 9.2E-07 42.9 8.5 92 5-101 253-348 (574)
197 KOG0203 Na+/K+ ATPase, alpha s 96.2 0.0022 4.7E-08 52.8 1.3 112 7-123 590-745 (1019)
198 TIGR02463 MPGP_rel mannosyl-3- 96.0 0.02 4.3E-07 40.0 5.4 40 8-47 17-56 (221)
199 PRK12702 mannosyl-3-phosphogly 96.0 0.019 4.2E-07 42.2 5.3 46 5-50 16-61 (302)
200 PF05152 DUF705: Protein of un 96.0 0.027 5.9E-07 41.0 5.9 50 8-57 143-192 (297)
201 KOG2469 IMP-GMP specific 5'-nu 95.9 0.023 4.9E-07 43.3 5.5 98 12-109 203-335 (424)
202 TIGR01456 CECR5 HAD-superfamil 95.8 0.061 1.3E-06 40.1 7.4 86 6-104 15-108 (321)
203 PRK10530 pyridoxal phosphate ( 95.7 0.029 6.3E-07 40.3 5.3 43 7-49 20-62 (272)
204 KOG2134 Polynucleotide kinase 95.5 0.073 1.6E-06 40.5 6.9 95 8-104 105-230 (422)
205 TIGR01486 HAD-SF-IIB-MPGP mann 95.5 0.047 1E-06 39.2 5.8 42 8-49 17-58 (256)
206 KOG3128 Uncharacterized conser 95.2 0.037 7.9E-07 39.8 4.3 96 4-99 135-247 (298)
207 KOG0206 P-type ATPase [General 95.1 0.06 1.3E-06 46.4 6.0 44 5-48 649-692 (1151)
208 PRK03669 mannosyl-3-phosphogly 95.1 0.064 1.4E-06 38.9 5.4 41 7-47 24-64 (271)
209 PF08235 LNS2: LNS2 (Lipin/Ned 94.9 0.3 6.5E-06 32.7 7.6 94 7-102 27-141 (157)
210 PLN02580 trehalose-phosphatase 94.4 0.14 3E-06 39.3 5.9 66 66-139 303-376 (384)
211 PRK14502 bifunctional mannosyl 94.1 0.12 2.7E-06 42.3 5.2 41 65-105 614-656 (694)
212 KOG0209 P-type ATPase [Inorgan 94.0 0.27 5.8E-06 41.2 7.0 43 5-47 673-715 (1160)
213 TIGR01689 EcbF-BcbF capsule bi 93.5 0.3 6.5E-06 31.5 5.4 30 6-35 23-52 (126)
214 KOG4549 Magnesium-dependent ph 93.4 0.84 1.8E-05 29.5 7.0 84 3-91 40-133 (144)
215 COG4850 Uncharacterized conser 93.4 0.76 1.6E-05 34.4 7.8 87 2-94 191-292 (373)
216 PLN02205 alpha,alpha-trehalose 93.3 0.26 5.6E-06 41.7 6.1 38 6-43 615-653 (854)
217 TIGR01484 HAD-SF-IIB HAD-super 93.1 0.24 5.2E-06 34.1 4.8 39 6-44 16-54 (204)
218 PLN02423 phosphomannomutase 92.7 0.17 3.7E-06 36.3 3.7 30 79-108 199-232 (245)
219 COG0731 Fe-S oxidoreductases [ 92.6 0.57 1.2E-05 34.6 6.3 101 3-109 88-212 (296)
220 PRK14502 bifunctional mannosyl 92.1 0.41 8.9E-06 39.3 5.4 44 7-50 433-476 (694)
221 PLN02887 hydrolase family prot 91.8 0.54 1.2E-05 38.1 5.8 41 7-47 325-365 (580)
222 PLN02177 glycerol-3-phosphate 91.5 4.4 9.6E-05 32.3 10.5 84 16-101 116-209 (497)
223 PTZ00174 phosphomannomutase; P 91.5 0.23 5.1E-06 35.5 3.2 28 80-107 200-231 (247)
224 PTZ00174 phosphomannomutase; P 91.4 0.45 9.9E-06 34.0 4.7 38 6-43 21-58 (247)
225 KOG1605 TFIIF-interacting CTD 90.6 0.05 1.1E-06 39.4 -0.9 96 6-105 130-226 (262)
226 TIGR00236 wecB UDP-N-acetylglu 90.1 2.8 6E-05 31.5 8.1 98 12-109 16-119 (365)
227 PF02350 Epimerase_2: UDP-N-ac 89.9 1 2.2E-05 34.0 5.6 91 18-109 2-100 (346)
228 cd04728 ThiG Thiazole synthase 89.6 6.2 0.00013 28.5 10.5 101 3-111 100-208 (248)
229 KOG2832 TFIIF-interacting CTD 89.2 2.4 5.2E-05 32.3 6.8 82 6-91 213-294 (393)
230 KOG0210 P-type ATPase [Inorgan 88.4 0.37 7.9E-06 39.7 2.3 37 6-42 657-693 (1051)
231 PF03332 PMM: Eukaryotic phosp 88.3 0.8 1.7E-05 32.4 3.7 47 12-59 1-47 (220)
232 PF04413 Glycos_transf_N: 3-De 88.3 1.1 2.3E-05 30.9 4.3 72 14-94 109-185 (186)
233 KOG1618 Predicted phosphatase 88.2 0.39 8.4E-06 35.9 2.1 50 60-109 268-342 (389)
234 TIGR00262 trpA tryptophan synt 88.1 8.2 0.00018 28.0 9.7 98 8-109 125-229 (256)
235 TIGR02471 sucr_syn_bact_C sucr 87.4 2.1 4.6E-05 30.1 5.6 44 12-57 20-63 (236)
236 KOG0208 Cation transport ATPas 87.2 2.1 4.5E-05 36.7 5.9 49 6-54 704-752 (1140)
237 PRK11840 bifunctional sulfur c 86.9 11 0.00025 28.3 11.2 98 4-110 175-281 (326)
238 PRK00994 F420-dependent methyl 86.1 11 0.00023 27.3 9.6 83 21-109 29-118 (277)
239 COG3769 Predicted hydrolase (H 85.4 1.8 4E-05 30.8 4.2 37 11-47 27-63 (274)
240 TIGR03470 HpnH hopanoid biosyn 85.3 13 0.00029 27.7 10.0 30 5-34 82-111 (318)
241 PF13580 SIS_2: SIS domain; PD 84.4 8.8 0.00019 24.8 9.7 98 10-107 22-137 (138)
242 PRK00208 thiG thiazole synthas 84.1 14 0.0003 26.8 10.2 100 4-111 101-208 (250)
243 TIGR02329 propionate_PrpR prop 83.7 12 0.00025 30.2 8.5 87 11-109 85-172 (526)
244 PLN03017 trehalose-phosphatase 83.6 1.6 3.5E-05 33.3 3.6 38 4-42 130-167 (366)
245 PLN02580 trehalose-phosphatase 83.6 1.9 4.2E-05 33.2 4.0 41 3-44 137-177 (384)
246 TIGR02468 sucrsPsyn_pln sucros 83.3 9.5 0.00021 33.3 8.2 73 34-109 923-1002(1050)
247 KOG1618 Predicted phosphatase 82.9 7.6 0.00017 29.3 6.6 86 6-104 50-143 (389)
248 KOG3189 Phosphomannomutase [Li 82.4 2.6 5.6E-05 29.6 3.8 55 3-59 24-78 (252)
249 PLN02151 trehalose-phosphatase 81.2 4.1 8.8E-05 31.1 4.9 39 3-42 116-154 (354)
250 PF06014 DUF910: Bacterial pro 81.1 1.3 2.8E-05 24.8 1.7 26 69-98 7-32 (62)
251 PLN02151 trehalose-phosphatase 80.2 2.8 6.2E-05 31.9 3.8 65 67-139 272-344 (354)
252 PRK13762 tRNA-modifying enzyme 79.8 4.7 0.0001 30.3 4.8 32 4-35 139-170 (322)
253 PLN03017 trehalose-phosphatase 79.8 3.5 7.6E-05 31.5 4.2 66 67-139 286-358 (366)
254 PRK12702 mannosyl-3-phosphogly 79.6 4.7 0.0001 30.0 4.6 42 64-105 208-251 (302)
255 COG0381 WecB UDP-N-acetylgluco 79.2 22 0.00047 27.5 8.2 94 12-109 19-125 (383)
256 PRK15424 propionate catabolism 78.1 22 0.00047 28.8 8.3 87 11-109 95-182 (538)
257 TIGR02495 NrdG2 anaerobic ribo 78.1 6.1 0.00013 26.8 4.7 30 6-35 73-102 (191)
258 PRK13125 trpA tryptophan synth 77.3 24 0.00051 25.3 10.1 95 10-109 116-216 (244)
259 COG0761 lytB 4-Hydroxy-3-methy 77.2 15 0.00033 27.2 6.5 42 66-111 227-268 (294)
260 PF02358 Trehalose_PPase: Treh 76.7 3.2 7E-05 29.3 3.1 39 3-41 15-54 (235)
261 KOG0780 Signal recognition par 76.3 29 0.00063 27.2 8.0 39 57-95 190-229 (483)
262 PF06506 PrpR_N: Propionate ca 75.6 6.7 0.00015 26.5 4.3 87 12-110 66-153 (176)
263 CHL00162 thiG thiamin biosynth 75.1 30 0.00064 25.3 10.3 99 4-110 115-221 (267)
264 TIGR02886 spore_II_AA anti-sig 74.0 11 0.00023 22.9 4.6 36 13-50 61-96 (106)
265 PRK14021 bifunctional shikimat 72.7 50 0.0011 26.8 10.0 98 8-109 193-304 (542)
266 TIGR03365 Bsubt_queE 7-cyano-7 72.3 4.6 0.0001 28.8 3.0 29 8-36 85-113 (238)
267 PLN02591 tryptophan synthase 72.1 35 0.00075 24.7 8.7 98 9-109 117-220 (250)
268 PRK04302 triosephosphate isome 72.0 32 0.00068 24.2 8.5 99 7-109 98-204 (223)
269 TIGR02826 RNR_activ_nrdG3 anae 71.6 5.9 0.00013 26.2 3.1 26 9-34 74-99 (147)
270 COG4483 Uncharacterized protei 71.6 5.7 0.00012 22.4 2.6 25 70-98 8-32 (68)
271 PF04413 Glycos_transf_N: 3-De 71.5 30 0.00065 23.7 8.5 86 11-109 36-127 (186)
272 PF00578 AhpC-TSA: AhpC/TSA fa 71.4 8.3 0.00018 23.8 3.8 37 9-45 45-81 (124)
273 PLN02423 phosphomannomutase 71.0 8.4 0.00018 27.6 4.1 36 7-43 24-59 (245)
274 COG5190 FCP1 TFIIF-interacting 70.7 15 0.00032 28.5 5.5 83 7-93 252-334 (390)
275 cd07043 STAS_anti-anti-sigma_f 70.7 14 0.00029 21.7 4.5 36 13-50 60-95 (99)
276 COG4502 5'(3')-deoxyribonucleo 70.5 9.7 0.00021 25.2 3.9 75 4-98 65-145 (180)
277 PRK10076 pyruvate formate lyas 69.9 13 0.00028 26.2 4.7 37 7-43 50-89 (213)
278 COG0809 QueA S-adenosylmethion 69.1 48 0.001 25.2 7.7 111 13-141 189-315 (348)
279 COG0541 Ffh Signal recognition 68.9 38 0.00082 26.8 7.3 81 9-91 140-224 (451)
280 TIGR01101 V_ATP_synt_F vacuola 68.9 25 0.00054 22.3 5.4 64 10-75 46-111 (115)
281 COG1877 OtsB Trehalose-6-phosp 68.7 10 0.00022 27.8 4.1 43 3-45 36-79 (266)
282 COG0052 RpsB Ribosomal protein 68.5 43 0.00093 24.3 10.2 105 7-113 48-192 (252)
283 PRK10812 putative DNAse; Provi 68.3 43 0.00094 24.3 7.8 34 10-43 20-53 (265)
284 KOG0205 Plasma membrane H+-tra 68.2 34 0.00074 28.7 7.2 95 7-101 492-605 (942)
285 PF05690 ThiG: Thiazole biosyn 68.2 43 0.00093 24.2 9.9 98 3-109 100-206 (247)
286 cd05008 SIS_GlmS_GlmD_1 SIS (S 68.0 7.7 0.00017 24.2 3.1 26 10-35 60-85 (126)
287 smart00540 LEM in nuclear memb 68.0 7 0.00015 20.3 2.3 32 13-44 9-40 (44)
288 cd05014 SIS_Kpsf KpsF-like pro 67.4 7.4 0.00016 24.4 2.9 27 10-36 61-87 (128)
289 PF04007 DUF354: Protein of un 67.1 29 0.00063 26.3 6.4 92 12-109 16-112 (335)
290 TIGR03568 NeuC_NnaA UDP-N-acet 67.0 54 0.0012 24.9 7.9 32 78-109 92-126 (365)
291 PF13911 AhpC-TSA_2: AhpC/TSA 66.0 20 0.00043 22.1 4.7 34 13-46 3-36 (115)
292 PRK05301 pyrroloquinoline quin 65.9 17 0.00037 27.7 5.1 43 4-47 71-116 (378)
293 COG5663 Uncharacterized conser 65.6 6.3 0.00014 26.9 2.3 93 7-114 72-168 (194)
294 TIGR00377 ant_ant_sig anti-ant 64.7 21 0.00044 21.5 4.5 35 14-50 66-100 (108)
295 cd06533 Glyco_transf_WecG_TagA 64.5 41 0.00088 22.6 6.9 28 12-40 35-62 (171)
296 TIGR02109 PQQ_syn_pqqE coenzym 64.4 20 0.00043 27.1 5.1 30 4-33 62-91 (358)
297 PLN02334 ribulose-phosphate 3- 63.9 49 0.0011 23.3 10.7 97 10-109 102-204 (229)
298 COG1366 SpoIIAA Anti-anti-sigm 63.5 24 0.00051 22.0 4.6 36 13-50 66-101 (117)
299 cd00733 GlyRS_alpha_core Class 63.2 8.1 0.00018 28.0 2.6 41 63-103 81-128 (279)
300 TIGR02370 pyl_corrinoid methyl 63.2 47 0.001 22.9 8.8 36 69-104 155-190 (197)
301 PF02571 CbiJ: Precorrin-6x re 63.2 55 0.0012 23.7 8.3 116 4-130 110-243 (249)
302 cd05015 SIS_PGI_1 Phosphogluco 62.9 42 0.00091 22.2 7.2 27 9-35 4-33 (158)
303 cd05710 SIS_1 A subgroup of th 62.7 11 0.00024 23.6 3.0 26 10-35 61-86 (120)
304 PRK09348 glyQ glycyl-tRNA synt 62.7 8.4 0.00018 28.0 2.6 41 63-103 85-132 (283)
305 KOG0208 Cation transport ATPas 62.5 16 0.00035 31.7 4.6 89 9-101 649-744 (1140)
306 smart00052 EAL Putative diguan 62.4 49 0.0011 22.8 7.1 84 12-102 135-226 (241)
307 COG0019 LysA Diaminopimelate d 62.0 64 0.0014 25.1 7.5 31 77-107 93-125 (394)
308 TIGR03278 methan_mark_10 putat 61.6 19 0.00041 28.0 4.6 106 5-110 84-206 (404)
309 TIGR00388 glyQ glycyl-tRNA syn 61.3 9.5 0.0002 27.9 2.7 41 63-103 82-129 (293)
310 PF02358 Trehalose_PPase: Treh 61.1 7.1 0.00015 27.6 2.1 60 66-127 167-234 (235)
311 TIGR00640 acid_CoA_mut_C methy 60.5 18 0.00039 23.4 3.7 80 9-98 39-124 (132)
312 cd03018 PRX_AhpE_like Peroxire 60.1 21 0.00045 22.9 4.1 32 13-44 52-83 (149)
313 PF05240 APOBEC_C: APOBEC-like 60.1 8.3 0.00018 21.0 1.8 29 10-38 2-30 (55)
314 PF02593 dTMP_synthase: Thymid 60.1 20 0.00043 25.4 4.1 90 7-100 59-154 (217)
315 TIGR03151 enACPred_II putative 60.0 70 0.0015 23.9 9.3 42 65-109 149-192 (307)
316 PF01993 MTD: methylene-5,6,7, 60.0 39 0.00085 24.5 5.5 83 21-109 28-117 (276)
317 PRK10017 colanic acid biosynth 59.6 85 0.0018 24.7 11.4 86 11-109 261-355 (426)
318 TIGR03572 WbuZ glycosyl amidat 59.3 59 0.0013 22.8 8.6 42 64-108 184-228 (232)
319 PF05988 DUF899: Bacterial pro 59.0 45 0.00097 23.6 5.6 47 9-57 92-138 (211)
320 cd01948 EAL EAL domain. This d 59.0 57 0.0012 22.5 6.6 84 12-102 134-225 (240)
321 PRK06267 hypothetical protein; 59.0 78 0.0017 24.1 7.7 127 7-133 150-300 (350)
322 PLN03063 alpha,alpha-trehalose 58.8 17 0.00036 31.0 4.1 41 4-44 529-570 (797)
323 PRK12656 fructose-6-phosphate 58.8 63 0.0014 23.0 7.9 98 7-107 89-189 (222)
324 COG1225 Bcp Peroxiredoxin [Pos 58.8 31 0.00068 23.1 4.7 41 11-53 52-92 (157)
325 PRK03692 putative UDP-N-acetyl 58.3 67 0.0015 23.1 7.1 81 13-98 95-177 (243)
326 COG2044 Predicted peroxiredoxi 58.3 17 0.00038 23.2 3.3 28 7-34 59-86 (120)
327 PRK15317 alkyl hydroperoxide r 58.2 95 0.0021 24.8 8.2 30 79-108 210-242 (517)
328 cd03017 PRX_BCP Peroxiredoxin 57.8 25 0.00055 22.1 4.2 32 14-45 48-79 (140)
329 cd01994 Alpha_ANH_like_IV This 57.5 61 0.0013 22.4 8.2 97 15-116 15-130 (194)
330 cd05017 SIS_PGI_PMI_1 The memb 57.3 14 0.00031 23.0 2.9 24 10-33 57-80 (119)
331 PRK05752 uroporphyrinogen-III 57.0 69 0.0015 22.9 8.3 23 7-29 10-32 (255)
332 cd06589 GH31 The enzymes of gl 56.7 16 0.00034 26.5 3.3 28 7-34 63-90 (265)
333 PF12261 T_hemolysin: Thermost 56.7 40 0.00087 23.1 5.0 32 15-48 108-139 (179)
334 PF06189 5-nucleotidase: 5'-nu 56.6 46 0.001 24.4 5.5 87 11-110 168-261 (264)
335 PLN02205 alpha,alpha-trehalose 56.5 19 0.00042 30.9 4.2 69 67-142 765-847 (854)
336 PF01740 STAS: STAS domain; I 56.4 14 0.00031 22.7 2.7 37 12-50 69-105 (117)
337 cd04906 ACT_ThrD-I_1 First of 56.1 33 0.0007 20.1 4.1 21 12-32 55-75 (85)
338 cd04795 SIS SIS domain. SIS (S 56.0 14 0.00031 21.1 2.5 21 10-30 61-81 (87)
339 COG2099 CobK Precorrin-6x redu 55.9 78 0.0017 23.1 8.2 101 4-109 109-231 (257)
340 cd01766 Ufm1 Urm1-like ubiquit 55.6 19 0.00041 20.9 2.8 41 61-101 24-64 (82)
341 TIGR00685 T6PP trehalose-phosp 55.5 13 0.00028 26.5 2.7 38 3-40 21-59 (244)
342 PF12242 Eno-Rase_NADH_b: NAD( 55.5 16 0.00035 21.4 2.6 31 79-109 38-73 (78)
343 PF01380 SIS: SIS domain SIS d 55.4 22 0.00048 22.1 3.6 28 10-37 67-94 (131)
344 PRK13111 trpA tryptophan synth 55.3 79 0.0017 23.0 8.6 94 10-110 129-231 (258)
345 PRK11145 pflA pyruvate formate 55.2 35 0.00077 24.2 4.9 27 8-34 83-110 (246)
346 TIGR03127 RuMP_HxlB 6-phospho 55.1 16 0.00036 24.5 3.1 29 10-38 86-114 (179)
347 cd07041 STAS_RsbR_RsbS_like Su 54.8 46 0.00099 20.1 5.2 33 14-48 64-96 (109)
348 PRK01018 50S ribosomal protein 54.4 35 0.00076 20.8 4.1 36 7-42 16-51 (99)
349 cd05006 SIS_GmhA Phosphoheptos 54.3 16 0.00034 24.6 2.8 24 10-33 115-138 (177)
350 COG1911 RPL30 Ribosomal protei 54.2 39 0.00084 20.8 4.1 38 7-44 19-56 (100)
351 PRK08005 epimerase; Validated 54.0 75 0.0016 22.4 9.4 95 10-108 93-192 (210)
352 PRK08304 stage V sporulation p 54.0 39 0.00085 25.7 5.0 65 45-109 33-110 (337)
353 TIGR00113 queA S-adenosylmethi 53.9 98 0.0021 23.7 7.1 111 13-141 188-316 (344)
354 TIGR00715 precor6x_red precorr 53.4 85 0.0018 22.8 9.1 28 5-32 108-138 (256)
355 cd06844 STAS Sulphate Transpor 53.4 42 0.00092 20.0 4.4 34 13-48 61-94 (100)
356 TIGR02493 PFLA pyruvate format 53.3 33 0.00072 24.0 4.5 36 8-43 78-118 (235)
357 PRK00994 F420-dependent methyl 52.7 31 0.00068 25.0 4.1 40 8-47 72-111 (277)
358 PLN02587 L-galactose dehydroge 52.6 81 0.0018 23.3 6.6 35 9-43 130-165 (314)
359 PRK13937 phosphoheptose isomer 52.0 19 0.00041 24.6 3.0 24 10-33 120-143 (188)
360 COG2897 SseA Rhodanese-related 52.0 33 0.00071 25.4 4.3 51 60-110 69-125 (285)
361 PF00875 DNA_photolyase: DNA p 52.0 15 0.00033 24.3 2.5 47 9-59 52-98 (165)
362 PRK00147 queA S-adenosylmethio 51.6 1.1E+02 0.0023 23.5 8.1 111 13-141 187-314 (342)
363 PLN02951 Molybderin biosynthes 51.6 1.1E+02 0.0024 23.5 7.8 30 5-34 116-147 (373)
364 PRK11449 putative deoxyribonuc 51.1 92 0.002 22.5 8.7 96 11-109 20-136 (258)
365 PF04123 DUF373: Domain of unk 51.1 89 0.0019 23.9 6.6 36 69-106 90-127 (344)
366 TIGR02845 spore_V_AD stage V s 50.7 79 0.0017 24.0 6.1 65 45-109 27-104 (327)
367 PRK13602 putative ribosomal pr 50.1 43 0.00093 19.7 3.9 35 7-41 11-45 (82)
368 cd08573 GDPD_GDE1 Glycerophosp 50.1 46 0.00099 24.0 4.8 35 13-47 218-252 (258)
369 KOG0541 Alkyl hydroperoxide re 49.6 66 0.0014 21.8 5.0 41 9-49 64-105 (171)
370 cd06591 GH31_xylosidase_XylS X 49.0 25 0.00053 26.3 3.4 24 7-30 63-86 (319)
371 PRK01424 S-adenosylmethionine: 48.8 1.2E+02 0.0026 23.4 6.9 111 13-141 209-335 (366)
372 PF00588 SpoU_methylase: SpoU 48.6 18 0.0004 23.3 2.4 50 7-61 59-108 (142)
373 TIGR02494 PFLE_PFLC glycyl-rad 48.6 34 0.00074 25.0 4.0 27 8-34 138-165 (295)
374 COG1180 PflA Pyruvate-formate 48.3 33 0.00072 24.9 3.9 26 8-33 97-122 (260)
375 cd06595 GH31_xylosidase_XylS-l 48.3 26 0.00057 25.8 3.4 26 7-32 71-96 (292)
376 cd04726 KGPDC_HPS 3-Keto-L-gul 48.2 85 0.0018 21.3 9.9 90 12-109 92-188 (202)
377 cd05005 SIS_PHI Hexulose-6-pho 48.2 23 0.00049 23.8 2.9 26 10-35 89-114 (179)
378 PF04230 PS_pyruv_trans: Polys 48.1 91 0.002 21.6 7.5 27 83-109 259-285 (286)
379 PLN03064 alpha,alpha-trehalose 48.1 30 0.00066 30.0 4.1 41 5-45 620-661 (934)
380 cd03013 PRX5_like Peroxiredoxi 48.0 47 0.001 21.9 4.3 37 10-46 51-88 (155)
381 cd04256 AAK_P5CS_ProBA AAK_P5C 48.0 77 0.0017 23.4 5.8 77 10-88 34-128 (284)
382 PRK08883 ribulose-phosphate 3- 47.4 99 0.0022 21.8 8.2 97 9-109 92-197 (220)
383 cd06594 GH31_glucosidase_YihQ 47.3 25 0.00054 26.3 3.2 25 7-31 68-92 (317)
384 COG0378 HypB Ni2+-binding GTPa 47.0 99 0.0021 21.7 7.6 92 13-109 31-130 (202)
385 COG1834 N-Dimethylarginine dim 46.9 70 0.0015 23.5 5.2 72 13-98 41-146 (267)
386 TIGR00441 gmhA phosphoheptose 46.7 23 0.00051 23.3 2.7 25 10-34 93-117 (154)
387 KOG2599 Pyridoxal/pyridoxine/p 46.7 18 0.00038 26.7 2.2 30 4-33 161-190 (308)
388 cd02971 PRX_family Peroxiredox 46.7 45 0.00098 20.9 4.0 33 11-43 44-76 (140)
389 PRK00414 gmhA phosphoheptose i 46.4 27 0.00058 24.0 3.0 25 10-34 125-149 (192)
390 TIGR03595 Obg_CgtA_exten Obg f 46.4 32 0.0007 19.5 2.9 21 69-89 45-65 (69)
391 PF09269 DUF1967: Domain of un 45.8 23 0.0005 20.1 2.2 21 69-89 45-65 (69)
392 PLN02834 3-dehydroquinate synt 45.5 1.5E+02 0.0033 23.4 8.9 85 22-109 99-198 (433)
393 COG1436 NtpG Archaeal/vacuolar 45.3 74 0.0016 19.8 5.3 44 11-54 34-77 (104)
394 cd06592 GH31_glucosidase_KIAA1 44.9 31 0.00068 25.5 3.4 26 7-32 67-92 (303)
395 cd02970 PRX_like2 Peroxiredoxi 44.6 48 0.001 21.0 3.9 20 16-35 50-69 (149)
396 COG0854 PdxJ Pyridoxal phospha 44.3 50 0.0011 23.7 4.0 34 9-42 110-143 (243)
397 PRK06203 aroB 3-dehydroquinate 44.2 1.5E+02 0.0032 23.0 11.8 87 23-109 42-146 (389)
398 cd06598 GH31_transferase_CtsZ 44.1 34 0.00074 25.5 3.5 25 7-31 67-91 (317)
399 cd06597 GH31_transferase_CtsY 43.9 33 0.00071 26.0 3.4 24 8-31 83-106 (340)
400 TIGR03140 AhpF alkyl hydropero 43.6 1.5E+02 0.0032 23.8 7.2 30 78-107 210-242 (515)
401 cd06599 GH31_glycosidase_Aec37 43.5 33 0.00072 25.6 3.4 25 7-31 70-94 (317)
402 cd08197 DOIS 2-deoxy-scyllo-in 43.4 1.5E+02 0.0032 22.7 10.4 96 10-109 8-119 (355)
403 TIGR02990 ectoine_eutA ectoine 43.2 1.2E+02 0.0027 21.7 8.1 86 6-91 102-193 (239)
404 CHL00200 trpA tryptophan synth 43.2 1.3E+02 0.0028 22.0 9.7 98 8-108 129-232 (263)
405 cd01425 RPS2 Ribosomal protein 43.1 1.1E+02 0.0024 21.1 9.1 99 11-110 44-160 (193)
406 PRK13278 purP 5-formaminoimida 43.1 1.2E+02 0.0025 23.4 6.2 43 69-111 7-51 (358)
407 cd06593 GH31_xylosidase_YicI Y 42.9 35 0.00075 25.2 3.4 25 7-31 63-87 (308)
408 PF02350 Epimerase_2: UDP-N-ac 42.8 1.5E+02 0.0032 22.5 10.4 93 10-117 200-294 (346)
409 TIGR02765 crypto_DASH cryptoch 42.6 35 0.00076 26.5 3.5 39 9-47 60-98 (429)
410 cd04724 Tryptophan_synthase_al 42.5 1.2E+02 0.0027 21.6 9.1 97 9-109 115-217 (242)
411 PTZ00106 60S ribosomal protein 42.4 66 0.0014 20.1 4.0 36 7-42 25-60 (108)
412 TIGR00221 nagA N-acetylglucosa 42.1 57 0.0012 25.1 4.5 35 9-43 176-211 (380)
413 KOG2116 Protein involved in pl 42.0 87 0.0019 26.2 5.5 94 10-103 561-673 (738)
414 cd02072 Glm_B12_BD B12 binding 42.0 48 0.001 21.4 3.5 80 11-94 38-123 (128)
415 COG5012 Predicted cobalamin bi 42.0 29 0.00064 24.7 2.6 42 9-50 169-211 (227)
416 COG0602 NrdG Organic radical a 41.8 35 0.00076 24.0 3.1 26 9-34 85-110 (212)
417 PRK13938 phosphoheptose isomer 41.7 31 0.00068 23.9 2.8 25 10-34 127-151 (196)
418 cd06603 GH31_GANC_GANAB_alpha 41.4 38 0.00082 25.5 3.4 25 7-31 61-85 (339)
419 cd08198 DHQS-like2 Dehydroquin 41.4 1.6E+02 0.0036 22.7 11.4 87 23-109 30-134 (369)
420 TIGR03556 photolyase_8HDF deox 41.2 39 0.00084 26.8 3.5 40 8-47 53-92 (471)
421 PF07085 DRTGG: DRTGG domain; 41.1 34 0.00073 20.8 2.6 32 80-111 40-72 (105)
422 PF08484 Methyltransf_14: C-me 41.0 92 0.002 20.8 4.9 47 10-58 55-102 (160)
423 TIGR00696 wecB_tagA_cpsF bacte 40.9 1.2E+02 0.0025 20.7 7.6 80 13-98 38-120 (177)
424 COG0752 GlyQ Glycyl-tRNA synth 40.6 28 0.00061 25.3 2.4 40 63-102 86-132 (298)
425 PRK12404 stage V sporulation p 40.5 60 0.0013 24.7 4.2 64 45-108 31-107 (334)
426 COG3010 NanE Putative N-acetyl 40.3 1.2E+02 0.0025 21.6 5.3 57 54-112 102-160 (229)
427 PLN02382 probable sucrose-phos 40.1 72 0.0016 24.9 4.8 36 12-47 34-69 (413)
428 PRK13277 5-formaminoimidazole- 40.1 1.3E+02 0.0028 23.3 6.0 70 69-138 6-81 (366)
429 PRK10425 DNase TatD; Provision 40.1 1.4E+02 0.0031 21.6 8.8 35 8-42 13-47 (258)
430 cd06600 GH31_MGAM-like This fa 39.9 40 0.00087 25.2 3.3 25 7-31 61-85 (317)
431 TIGR03679 arCOG00187 arCOG0018 39.8 1.3E+02 0.0029 21.1 9.0 96 15-116 13-128 (218)
432 TIGR01306 GMP_reduct_2 guanosi 39.8 1.7E+02 0.0036 22.2 9.3 91 13-109 72-167 (321)
433 PF03020 LEM: LEM domain; Int 39.5 4.5 9.8E-05 20.9 -1.3 29 15-43 11-39 (43)
434 PTZ00170 D-ribulose-5-phosphat 39.4 1.4E+02 0.003 21.2 7.9 96 12-109 103-203 (228)
435 PF13034 DUF3895: Protein of u 39.4 42 0.0009 19.7 2.6 33 3-35 41-73 (78)
436 PRK03202 6-phosphofructokinase 39.3 54 0.0012 24.7 3.9 93 14-109 22-125 (320)
437 PF07611 DUF1574: Protein of u 39.1 70 0.0015 24.5 4.4 36 11-46 253-288 (345)
438 PF11848 DUF3368: Domain of un 39.1 29 0.00063 18.1 1.8 18 9-26 18-35 (48)
439 PF04055 Radical_SAM: Radical 39.0 1E+02 0.0022 19.5 5.5 41 5-45 55-100 (166)
440 COG0656 ARA1 Aldo/keto reducta 39.0 1.6E+02 0.0035 21.8 7.3 63 11-78 121-184 (280)
441 PF01993 MTD: methylene-5,6,7, 39.0 38 0.00082 24.6 2.8 39 9-47 72-110 (276)
442 cd08612 GDPD_GDE4 Glycerophosp 38.8 76 0.0016 23.4 4.6 35 12-47 250-284 (300)
443 COG4312 Uncharacterized protei 38.6 1E+02 0.0022 22.2 4.8 49 8-58 97-145 (247)
444 TIGR00623 sula cell division i 38.6 44 0.00095 22.7 3.0 41 68-108 72-117 (168)
445 cd01445 TST_Repeats Thiosulfat 38.5 1.1E+02 0.0023 19.7 5.8 49 62-110 76-132 (138)
446 COG1831 Predicted metal-depend 38.4 1.3E+02 0.0027 22.3 5.4 114 10-125 107-231 (285)
447 PF03808 Glyco_tran_WecB: Glyc 38.4 1.2E+02 0.0027 20.3 7.5 83 11-98 36-121 (172)
448 PF13704 Glyco_tranf_2_4: Glyc 38.4 84 0.0018 18.4 4.1 33 12-44 7-40 (97)
449 cd01781 AF6_RA_repeat2 Ubiquit 38.3 38 0.00082 20.9 2.4 40 5-49 3-44 (100)
450 smart00481 POLIIIAc DNA polyme 38.3 56 0.0012 17.9 3.1 23 11-33 16-38 (67)
451 KOG0391 SNF2 family DNA-depend 37.8 1.1E+02 0.0024 28.0 5.7 35 12-46 1265-1301(1958)
452 COG1058 CinA Predicted nucleot 37.8 50 0.0011 24.1 3.3 45 65-109 22-69 (255)
453 TIGR00186 rRNA_methyl_3 rRNA m 37.7 67 0.0015 22.9 4.0 24 9-32 149-172 (237)
454 COG0821 gcpE 1-hydroxy-2-methy 37.4 49 0.0011 25.2 3.3 99 10-116 36-140 (361)
455 PF06437 ISN1: IMP-specific 5' 37.4 49 0.0011 25.7 3.4 45 65-109 350-401 (408)
456 PRK13936 phosphoheptose isomer 37.3 42 0.0009 23.2 2.8 30 10-39 125-154 (197)
457 cd08199 EEVS 2-epi-5-epi-valio 36.8 1.9E+02 0.0041 22.1 9.6 95 10-109 12-123 (354)
458 COG1393 ArsC Arsenate reductas 36.7 1E+02 0.0022 19.5 4.3 35 12-46 14-52 (117)
459 PRK10886 DnaA initiator-associ 36.6 41 0.00088 23.4 2.7 31 10-40 123-153 (196)
460 PRK13601 putative L7Ae-like ri 36.6 91 0.002 18.4 3.8 35 7-41 8-42 (82)
461 PF10113 Fibrillarin_2: Fibril 36.6 46 0.001 26.2 3.1 43 67-109 209-255 (505)
462 TIGR01657 P-ATPase-V P-type AT 36.5 1.1E+02 0.0023 27.2 5.7 89 9-101 600-695 (1054)
463 PF01976 DUF116: Protein of un 36.4 93 0.002 20.8 4.3 31 12-44 75-105 (158)
464 PF02606 LpxK: Tetraacyldisacc 36.4 1.1E+02 0.0025 23.0 5.2 25 10-34 52-76 (326)
465 COG0352 ThiE Thiamine monophos 36.3 1.5E+02 0.0033 20.9 8.6 88 16-109 97-188 (211)
466 PF01026 TatD_DNase: TatD rela 36.3 1.1E+02 0.0024 21.8 5.1 98 9-109 13-133 (255)
467 PRK12314 gamma-glutamyl kinase 36.3 25 0.00054 25.6 1.7 78 9-90 33-113 (266)
468 PF07788 DUF1626: Protein of u 36.1 54 0.0012 18.8 2.7 40 8-47 30-70 (70)
469 PF07287 DUF1446: Protein of u 36.0 2E+02 0.0044 22.2 8.6 38 10-47 58-100 (362)
470 TIGR01839 PHA_synth_II poly(R) 35.9 43 0.00093 27.4 3.0 36 13-51 237-272 (560)
471 PF00696 AA_kinase: Amino acid 35.8 49 0.0011 23.2 3.1 39 9-48 19-57 (242)
472 PRK02947 hypothetical protein; 35.8 40 0.00088 24.2 2.7 24 10-33 120-143 (246)
473 PF05690 ThiG: Thiazole biosyn 35.7 84 0.0018 22.8 4.1 97 11-108 50-152 (247)
474 PF08444 Gly_acyl_tr_C: Aralky 35.7 1E+02 0.0022 18.6 4.0 34 13-46 42-75 (89)
475 TIGR02668 moaA_archaeal probab 35.6 50 0.0011 24.2 3.2 31 4-34 65-96 (302)
476 PRK10853 putative reductase; P 35.6 76 0.0017 20.0 3.6 40 11-50 12-55 (118)
477 cd03409 Chelatase_Class_II Cla 35.4 66 0.0014 19.0 3.3 21 9-29 44-64 (101)
478 PRK09423 gldA glycerol dehydro 35.1 2E+02 0.0044 21.9 9.7 93 10-109 15-117 (366)
479 cd06602 GH31_MGAM_SI_GAA This 35.0 47 0.001 25.1 3.0 24 8-31 62-87 (339)
480 PRK00748 1-(5-phosphoribosyl)- 34.9 1.6E+02 0.0034 20.6 7.9 43 64-109 177-222 (233)
481 cd00763 Bacterial_PFK Phosphof 34.9 1.1E+02 0.0023 23.1 4.8 95 14-109 21-124 (317)
482 cd00363 PFK Phosphofructokinas 34.9 90 0.002 23.7 4.5 92 14-108 21-129 (338)
483 TIGR01170 rplA_mito ribosomal 34.7 59 0.0013 21.4 3.1 25 80-104 52-76 (141)
484 PRK06100 DNA polymerase III su 34.2 1E+02 0.0023 20.0 4.1 88 17-108 7-94 (132)
485 PRK06856 DNA polymerase III su 34.2 1E+02 0.0022 19.9 4.1 65 18-87 7-71 (128)
486 PF13686 DrsE_2: DsrE/DsrF/Drs 34.2 40 0.00087 22.3 2.3 24 9-32 90-113 (148)
487 COG1759 5-formaminoimidazole-4 34.2 2.1E+02 0.0045 21.9 6.1 70 68-137 6-80 (361)
488 PF00563 EAL: EAL domain; Int 34.2 54 0.0012 22.5 3.1 84 13-103 137-227 (236)
489 cd06604 GH31_glucosidase_II_Ma 33.9 57 0.0012 24.6 3.3 24 7-30 61-84 (339)
490 PRK11081 tRNA guanosine-2'-O-m 33.7 1E+02 0.0022 22.1 4.3 53 6-61 73-125 (229)
491 PRK09437 bcp thioredoxin-depen 33.6 1.1E+02 0.0023 19.7 4.3 12 67-78 76-87 (154)
492 cd01335 Radical_SAM Radical SA 33.6 1.2E+02 0.0027 19.7 4.7 39 8-46 57-99 (204)
493 cd01012 YcaC_related YcaC rela 33.4 44 0.00096 21.9 2.4 90 8-109 21-122 (157)
494 cd06416 GH25_Lys1-like Lys-1 i 33.4 55 0.0012 22.4 3.0 23 11-33 111-133 (196)
495 PRK11382 frlB fructoselysine-6 33.3 51 0.0011 24.8 3.0 25 10-34 106-130 (340)
496 cd01820 PAF_acetylesterase_lik 33.2 46 0.00099 22.9 2.6 25 68-92 20-44 (214)
497 cd03012 TlpA_like_DipZ_like Tl 33.2 63 0.0014 20.1 3.0 15 65-79 72-86 (126)
498 COG0337 AroB 3-dehydroquinate 33.2 2.3E+02 0.005 21.9 7.6 98 8-109 17-129 (360)
499 KOG3483 Uncharacterized conser 32.9 63 0.0014 18.9 2.6 41 60-100 34-74 (94)
500 cd01480 vWA_collagen_alpha_1-V 32.9 48 0.001 22.4 2.6 53 80-132 110-177 (186)
No 1
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.97 E-value=4.9e-29 Score=178.08 Aligned_cols=139 Identities=78% Similarity=1.210 Sum_probs=127.9
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
..+.++||+.++|+.|+++|++++|+||++...++..++.+|+.+||+.++++++....||+|+.|..++++++++|++|
T Consensus 105 ~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 184 (248)
T PLN02770 105 EQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHT 184 (248)
T ss_pred hcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHE
Confidence 45789999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhHHHHhhhhccC
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAALEELDMK 142 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~ 142 (145)
+||||+.+|+++|+++|+++|++.+|+....+...+++++++++.++..+..++.++.+
T Consensus 185 l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~~~~~~~~~~~~~ 243 (248)
T PLN02770 185 FVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDPKLWAALEELDQK 243 (248)
T ss_pred EEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhhHHHHHHhhcccc
Confidence 99999999999999999999999998766656666799999999998776667666544
No 2
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.95 E-value=5e-27 Score=164.25 Aligned_cols=128 Identities=28% Similarity=0.393 Sum_probs=118.4
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
..++++||+.++|+.|+++|++++|+||+....+...++.+|+..+|+.++++++....||+|..+..+++++++++++|
T Consensus 79 ~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~ 158 (214)
T PRK13288 79 ELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEA 158 (214)
T ss_pred hhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCC-ChHHhhccccceeecCCCChh
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRN-PERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~-~~~~~~~~~~~~~~~~l~e~~ 131 (145)
+||||+.+|+++|+++|+++++|.||. ....+....++++++++.++.
T Consensus 159 ~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l~ 207 (214)
T PRK13288 159 LMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDLL 207 (214)
T ss_pred EEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHHH
Confidence 999999999999999999999999995 344455567999999999853
No 3
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.95 E-value=3.5e-27 Score=168.88 Aligned_cols=128 Identities=22% Similarity=0.287 Sum_probs=117.5
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc-ceeEecCcccCCCCChHHHHHHHHHcCCC-CC
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF-EAIIIGDECERAKPFPDPYLKAIEILNVS-KD 81 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f-~~i~~~~~~~~~kp~~~~~~~~~~~~~~~-~~ 81 (145)
..++++||+.++|+.|+++|++++|+||.+...++.+++.+|+..+| +.++++++....||+|++|..+++++++. ++
T Consensus 96 ~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~ 175 (253)
T TIGR01422 96 EYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVA 175 (253)
T ss_pred hcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCch
Confidence 35789999999999999999999999999999999999999999986 99999999889999999999999999995 99
Q ss_pred cEEEEecCHHhHHHHHhcCCEEEEEcCCCC------------------------hHHhhccccceeecCCCChh
Q 036267 82 HTFVFEDSVSGIKAGVAADLHVVGLATRNP------------------------ERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 82 ~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~------------------------~~~~~~~~~~~~~~~l~e~~ 131 (145)
+|+||||+.+|+++|+++|+.+|+|.+|.. ...+...+++++++++.++.
T Consensus 176 ~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~el~ 249 (253)
T TIGR01422 176 ACVKVGDTVPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKAAGAHYVIDTLAELP 249 (253)
T ss_pred heEEECCcHHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHhcCCCEehhcHHHHH
Confidence 999999999999999999999999999864 23555668999999999964
No 4
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.95 E-value=6.7e-27 Score=164.41 Aligned_cols=126 Identities=26% Similarity=0.449 Sum_probs=118.6
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEE
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
.+++||+.++|+.|+++|++++|+||.+...++..++.+|+..+|+.+++.++....||+|..+..++++++.+|++++|
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l~ 167 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEALM 167 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheEE
Confidence 57999999999999999999999999999999999999999999999999888889999999999999999999889999
Q ss_pred EecCHHhHHHHHhcCCEEEEEcCCCC-hHHhhccccceeecCCCChh
Q 036267 86 FEDSVSGIKAGVAADLHVVGLATRNP-ERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 86 iGD~~~Di~~a~~~G~~~i~v~~g~~-~~~~~~~~~~~~~~~l~e~~ 131 (145)
|||+.+||++|+++|+.+++|.||+. .+.+....++++++++.|+.
T Consensus 168 VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el~ 214 (220)
T COG0546 168 VGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAELL 214 (220)
T ss_pred ECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHHH
Confidence 99999999999999999999999974 55666778999999999964
No 5
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.95 E-value=1.4e-26 Score=167.02 Aligned_cols=142 Identities=20% Similarity=0.306 Sum_probs=122.7
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc-ceeEecCcccCCCCChHHHHHHHHHcCCC-CC
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF-EAIIIGDECERAKPFPDPYLKAIEILNVS-KD 81 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f-~~i~~~~~~~~~kp~~~~~~~~~~~~~~~-~~ 81 (145)
..+.++||+.++|+.|+++|++++|+||.+...+...++.+++..+| +.++++++....||+|.+|..+++++|+. ++
T Consensus 98 ~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~ 177 (267)
T PRK13478 98 DYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVA 177 (267)
T ss_pred hcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCc
Confidence 35689999999999999999999999999999999999999988875 89999999888999999999999999995 69
Q ss_pred cEEEEecCHHhHHHHHhcCCEEEEEcCCCC------------------------hHHhhccccceeecCCCChh--HHHH
Q 036267 82 HTFVFEDSVSGIKAGVAADLHVVGLATRNP------------------------ERLLLDAKASFIIKDYEDPK--LWAA 135 (145)
Q Consensus 82 ~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~------------------------~~~~~~~~~~~~~~~l~e~~--~~~~ 135 (145)
+|+||||+.+|+++|+++|+.+|+|.+|+. .+.+...+++++++++.++. +..+
T Consensus 178 e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~vi~~~~~l~~~l~~~ 257 (267)
T PRK13478 178 ACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAAGAHYVIDTIADLPAVIADI 257 (267)
T ss_pred ceEEEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHcCCCeehhhHHHHHHHHHHH
Confidence 999999999999999999999999999865 24455668999999999975 2233
Q ss_pred hhhhccCCCC
Q 036267 136 LEELDMKKDP 145 (145)
Q Consensus 136 ~~~~~~~~~~ 145 (145)
..++..+.+|
T Consensus 258 ~~~~~~~~~~ 267 (267)
T PRK13478 258 EARLARGERP 267 (267)
T ss_pred HHHHhcCCCC
Confidence 4445555555
No 6
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.95 E-value=1e-26 Score=161.68 Aligned_cols=128 Identities=23% Similarity=0.353 Sum_probs=118.5
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
..++++||+.++|++|+++|++++|+||++...++..++.+|+..+|+.++++++...+||+|.+|..+++++++++++|
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 151 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDA 151 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhhe
Confidence 45789999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCC-ChHHhhccccceeecCCCChh
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRN-PERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~-~~~~~~~~~~~~~~~~l~e~~ 131 (145)
+||||+.+|+++|+++|++++++.||. +..++...+++++++++.++.
T Consensus 152 l~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l~ 200 (205)
T TIGR01454 152 VMVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSLL 200 (205)
T ss_pred EEEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHHH
Confidence 999999999999999999999999996 445555667999999998853
No 7
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.94 E-value=1.2e-26 Score=163.13 Aligned_cols=133 Identities=23% Similarity=0.282 Sum_probs=120.9
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
...+++||+.++|+.|+++|++++|+||+....++..++.+++..+|+.++++++....||+|.+|..+++++|++|++|
T Consensus 89 ~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~ 168 (222)
T PRK10826 89 ETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTC 168 (222)
T ss_pred cCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 35789999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhHHHHh
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAAL 136 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~~ 136 (145)
+||||+.+|+++|+++|++++++.++....+.....++.++.++.++..+.++
T Consensus 169 ~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~ 221 (222)
T PRK10826 169 VALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTAADLL 221 (222)
T ss_pred EEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHHhhhhhc
Confidence 99999999999999999999999988654433334589999999998766654
No 8
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.94 E-value=2.3e-26 Score=160.49 Aligned_cols=127 Identities=26% Similarity=0.319 Sum_probs=116.9
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
..+++||+.++|+.|+++|++++|+||+....++..++++|+..+|+.++++++....||+|..|..+++++++++++|+
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 162 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMV 162 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence 46899999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred EEecCHHhHHHHHhcCCEEEEEcCCCC-hHHhhccccceeecCCCChh
Q 036267 85 VFEDSVSGIKAGVAADLHVVGLATRNP-ERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 85 ~iGD~~~Di~~a~~~G~~~i~v~~g~~-~~~~~~~~~~~~~~~l~e~~ 131 (145)
||||+.+|+++|+++|++++++.+|.. ...+....++++++++.++.
T Consensus 163 ~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l~ 210 (213)
T TIGR01449 163 YVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNELP 210 (213)
T ss_pred EeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHHH
Confidence 999999999999999999999999854 33444457899999998853
No 9
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.94 E-value=3.5e-26 Score=164.16 Aligned_cols=130 Identities=21% Similarity=0.361 Sum_probs=117.5
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
..++++||+.++|+.|+++|++++|+||++...++..++.+|+..||+.++++++....||+|++|..+++++|+++++|
T Consensus 106 ~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~ 185 (260)
T PLN03243 106 GLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERC 185 (260)
T ss_pred cCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHe
Confidence 35779999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhHHHH
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAA 135 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~ 135 (145)
+||||+.+|+++|+++|+.++++.+......+ ..++++++++.++..+.+
T Consensus 186 l~IgDs~~Di~aA~~aG~~~i~v~g~~~~~~l--~~ad~vi~~~~el~~~~~ 235 (260)
T PLN03243 186 IVFGNSNSSVEAAHDGCMKCVAVAGKHPVYEL--SAGDLVVRRLDDLSVVDL 235 (260)
T ss_pred EEEcCCHHHHHHHHHcCCEEEEEecCCchhhh--ccCCEEeCCHHHHHHHHH
Confidence 99999999999999999999999733333333 358999999999875554
No 10
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.94 E-value=8.7e-26 Score=168.25 Aligned_cols=130 Identities=22% Similarity=0.404 Sum_probs=119.1
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
....++||+.++|+.|+++|++++|+||.....++..++.+||..||+.++++++....||+|++|..+++++|++|++|
T Consensus 213 ~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peec 292 (381)
T PLN02575 213 GIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERC 292 (381)
T ss_pred cCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccE
Confidence 35679999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhHHHH
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAA 135 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~ 135 (145)
+||||+..||++|+++|+.+|+|.++...... ..++++++++.|+....+
T Consensus 293 l~IGDS~~DIeAAk~AGm~~IgV~~~~~~~~l--~~Ad~iI~s~~EL~~~~l 342 (381)
T PLN02575 293 IVFGNSNQTVEAAHDARMKCVAVASKHPIYEL--GAADLVVRRLDELSIVDL 342 (381)
T ss_pred EEEcCCHHHHHHHHHcCCEEEEECCCCChhHh--cCCCEEECCHHHHHHHHH
Confidence 99999999999999999999999987544432 348899999999865554
No 11
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.94 E-value=4.9e-26 Score=160.90 Aligned_cols=127 Identities=24% Similarity=0.275 Sum_probs=116.2
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
...+++||+.++|+.|+++|++++|+||++...+...++.+|+..+|+.++++++....||+|++|..+++++|++|++|
T Consensus 92 ~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~ 171 (229)
T PRK13226 92 TQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDC 171 (229)
T ss_pred hcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhE
Confidence 34789999999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCCC--hHHhhccccceeecCCCCh
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRNP--ERLLLDAKASFIIKDYEDP 130 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~~--~~~~~~~~~~~~~~~l~e~ 130 (145)
+||||+.+|+++|+++|+.+++|.+|.. .......+++++++++.++
T Consensus 172 l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el 220 (229)
T PRK13226 172 VYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLL 220 (229)
T ss_pred EEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHH
Confidence 9999999999999999999999999963 2334446799999999985
No 12
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.94 E-value=9.7e-26 Score=158.25 Aligned_cols=128 Identities=24% Similarity=0.338 Sum_probs=117.0
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc--CccceeEecCcccCCCCChHHHHHHHHHcCCC-C
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS--GFFEAIIIGDECERAKPFPDPYLKAIEILNVS-K 80 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~--~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~-~ 80 (145)
...+++||+.++|+.|+++|++++|+||+....++..++.+|+. .+|+.++++++....||+|++|..+++++++. |
T Consensus 84 ~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 163 (220)
T TIGR03351 84 GPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDV 163 (220)
T ss_pred cCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCCh
Confidence 35689999999999999999999999999999999999999998 99999999999888999999999999999997 7
Q ss_pred CcEEEEecCHHhHHHHHhcCCEE-EEEcCCC-ChHHhhccccceeecCCCChh
Q 036267 81 DHTFVFEDSVSGIKAGVAADLHV-VGLATRN-PERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 81 ~~~~~iGD~~~Di~~a~~~G~~~-i~v~~g~-~~~~~~~~~~~~~~~~l~e~~ 131 (145)
++|+||||+.+|+++|+++|+.+ +++.+|. ..+.+....++++++++.++.
T Consensus 164 ~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l~ 216 (220)
T TIGR03351 164 QSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADLP 216 (220)
T ss_pred hHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHHH
Confidence 99999999999999999999999 9999885 445555667899999998753
No 13
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.94 E-value=8.9e-26 Score=158.40 Aligned_cols=126 Identities=17% Similarity=0.299 Sum_probs=113.8
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
.++++||+.++|+.|+++|++++|+||+....++..++.+|+..+|+.++++++.+..||+|.+|..+++++|+++++|+
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 171 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAV 171 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCH-HhHHHHHhcCCEEEEEcCCCChH-H-hhccccceeecCCCCh
Q 036267 85 VFEDSV-SGIKAGVAADLHVVGLATRNPER-L-LLDAKASFIIKDYEDP 130 (145)
Q Consensus 85 ~iGD~~-~Di~~a~~~G~~~i~v~~g~~~~-~-~~~~~~~~~~~~l~e~ 130 (145)
||||+. +|+++|+++|+.+|++.++.... . .....++++++++.++
T Consensus 172 ~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 172 MVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred EECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 999998 89999999999999999885422 1 2234578889988774
No 14
>PRK11587 putative phosphatase; Provisional
Probab=99.93 E-value=7.9e-25 Score=153.62 Aligned_cols=125 Identities=24% Similarity=0.357 Sum_probs=111.6
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
..++++||+.++|+.|+++|++++|+||++...+...++..++ .+|+.++++++....||+|..|..+++++|++|++|
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~ 158 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQEC 158 (218)
T ss_pred cCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccE
Confidence 4678999999999999999999999999998888888888888 467888888888889999999999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChh
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~ 131 (145)
+||||+..|+++|+++|+.++++.++..... ...++++++++.++.
T Consensus 159 l~igDs~~di~aA~~aG~~~i~v~~~~~~~~--~~~~~~~~~~~~el~ 204 (218)
T PRK11587 159 VVVEDAPAGVLSGLAAGCHVIAVNAPADTPR--LDEVDLVLHSLEQLT 204 (218)
T ss_pred EEEecchhhhHHHHHCCCEEEEECCCCchhh--hccCCEEecchhhee
Confidence 9999999999999999999999988754332 235899999999864
No 15
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.93 E-value=2.6e-25 Score=156.69 Aligned_cols=109 Identities=13% Similarity=0.176 Sum_probs=101.9
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
..++++||+.++|+.|+++|++++|+||++...++..++.+|+..+|+.++++++.+..||+|+.|..+++++|++|++|
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 169 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERT 169 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHE
Confidence 34789999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCE-EEEEcCCCCh
Q 036267 84 FVFEDSVSGIKAGVAADLH-VVGLATRNPE 112 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~-~i~v~~g~~~ 112 (145)
+||||+..|+++|+++|+. +++|..+.+.
T Consensus 170 l~igDs~~di~aA~~aG~~~~~~v~~~~~~ 199 (224)
T PRK14988 170 LFIDDSEPILDAAAQFGIRYCLGVTNPDSG 199 (224)
T ss_pred EEEcCCHHHHHHHHHcCCeEEEEEeCCCCC
Confidence 9999999999999999998 5778776543
No 16
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.93 E-value=9.3e-25 Score=151.05 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=102.0
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
.++++||+.++|++|+++|++++|+||++...++..++.+|+..+|+.++++++.+..||+|.+|..+++++|++|++|+
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~ 169 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVL 169 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCHHhHHHHHhcCCEEEEEcCCC
Q 036267 85 VFEDSVSGIKAGVAADLHVVGLATRN 110 (145)
Q Consensus 85 ~iGD~~~Di~~a~~~G~~~i~v~~g~ 110 (145)
||||+.+|+++|+++|+.+|+|.++.
T Consensus 170 ~vgD~~~Di~~A~~~G~~~i~v~r~~ 195 (198)
T TIGR01428 170 FVASNPWDLGGAKKFGFKTAWVNRPG 195 (198)
T ss_pred EEeCCHHHHHHHHHCCCcEEEecCCC
Confidence 99999999999999999999998764
No 17
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.93 E-value=1e-24 Score=148.57 Aligned_cols=125 Identities=19% Similarity=0.332 Sum_probs=103.9
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCCh---------------HHHHHHHHHcCCcCccceeEec-----------C
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPR---------------ANAELMITKLGLSGFFEAIIIG-----------D 57 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~---------------~~~~~~l~~~~l~~~f~~i~~~-----------~ 57 (145)
.+++++||+.++|++|+++|++++|+||++. ..+...++.+++. |+.++.+ +
T Consensus 23 ~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~ 100 (176)
T TIGR00213 23 DNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD--LDGIYYCPHHPEGVEEFRQ 100 (176)
T ss_pred HHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC--ccEEEECCCCCcccccccC
Confidence 4678999999999999999999999999984 3444566666665 6666543 2
Q ss_pred cccCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEE-EEEcCCCChHHhhccccceeecCCCCh
Q 036267 58 ECERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHV-VGLATRNPERLLLDAKASFIIKDYEDP 130 (145)
Q Consensus 58 ~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~-i~v~~g~~~~~~~~~~~~~~~~~l~e~ 130 (145)
+...+||+|++|..+++++++++++|+||||+.+|+++|+++|+.+ +++.+|..........++++++++.++
T Consensus 101 ~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el 174 (176)
T TIGR00213 101 VCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADL 174 (176)
T ss_pred CCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHh
Confidence 4457899999999999999999999999999999999999999998 899998654433345689999999885
No 18
>PRK06769 hypothetical protein; Validated
Probab=99.92 E-value=5e-25 Score=149.63 Aligned_cols=129 Identities=17% Similarity=0.187 Sum_probs=105.2
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChH--------HHHHHHHHcCCcCccceeE-ecCcccCCCCChHHHHHHHH
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRA--------NAELMITKLGLSGFFEAII-IGDECERAKPFPDPYLKAIE 74 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~--------~~~~~l~~~~l~~~f~~i~-~~~~~~~~kp~~~~~~~~~~ 74 (145)
..+.++||+.++|++|+++|++++|+||++.. .....++.+|+..+|..+. .+++....||+|.+|..+++
T Consensus 25 ~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~ 104 (173)
T PRK06769 25 GSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAE 104 (173)
T ss_pred HHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHH
Confidence 46789999999999999999999999998742 2344577778776654333 34555789999999999999
Q ss_pred HcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCCh-------HHhhccccceeecCCCChhH
Q 036267 75 ILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPE-------RLLLDAKASFIIKDYEDPKL 132 (145)
Q Consensus 75 ~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~-------~~~~~~~~~~~~~~l~e~~~ 132 (145)
+++.++++|+||||+..|+++|+++|+.++++.+|... +.+....++++++++.++..
T Consensus 105 ~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el~~ 169 (173)
T PRK06769 105 KHGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDAVN 169 (173)
T ss_pred HcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHHHH
Confidence 99999999999999999999999999999999998533 22334568899998888643
No 19
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.92 E-value=2.4e-24 Score=155.72 Aligned_cols=127 Identities=23% Similarity=0.370 Sum_probs=116.7
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
...++||+.++|+.|+++|++++|+||.+...++..++.+++..+|+.++++++....||+|.+|+.+++++|+++++|+
T Consensus 99 ~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l 178 (272)
T PRK13223 99 LTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSL 178 (272)
T ss_pred CCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence 36789999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred EEecCHHhHHHHHhcCCEEEEEcCCCC-hHHhhccccceeecCCCChh
Q 036267 85 VFEDSVSGIKAGVAADLHVVGLATRNP-ERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 85 ~iGD~~~Di~~a~~~G~~~i~v~~g~~-~~~~~~~~~~~~~~~l~e~~ 131 (145)
||||+.+|+++|+++|+.+++|.+|.. ...+....++++++++.++.
T Consensus 179 ~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el~ 226 (272)
T PRK13223 179 FVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRALL 226 (272)
T ss_pred EECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHHH
Confidence 999999999999999999999999853 44444457999999999965
No 20
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.92 E-value=3.5e-24 Score=150.61 Aligned_cols=129 Identities=23% Similarity=0.340 Sum_probs=118.0
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
..+++||+.++|+.+++.|++++++||+....++.+++.+++..+|+.+++.++....||+|.++..+++++++++++|+
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 170 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEML 170 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheE
Confidence 57799999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred EEecCHHhHHHHHhcCCEEEEEcCCCC-hHHhhccccceeecCCCChhHH
Q 036267 85 VFEDSVSGIKAGVAADLHVVGLATRNP-ERLLLDAKASFIIKDYEDPKLW 133 (145)
Q Consensus 85 ~iGD~~~Di~~a~~~G~~~i~v~~g~~-~~~~~~~~~~~~~~~l~e~~~~ 133 (145)
+|||+.+|+++|+++|+.+++|.+|.. ..+.....++++++++.++...
T Consensus 171 ~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l~~~ 220 (226)
T PRK13222 171 FVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAELLPL 220 (226)
T ss_pred EECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHHHHH
Confidence 999999999999999999999999854 3344455789999999997543
No 21
>PRK09449 dUMP phosphatase; Provisional
Probab=99.92 E-value=2.1e-24 Score=151.80 Aligned_cols=125 Identities=17% Similarity=0.265 Sum_probs=110.1
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCC-CCcE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVS-KDHT 83 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~-~~~~ 83 (145)
.++++||+.++|+.|+ +|++++|+||+....++..++.+|+..+|+.++++++.+..||+|.+|..+++++|+. +++|
T Consensus 93 ~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~ 171 (224)
T PRK09449 93 ICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRV 171 (224)
T ss_pred cCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccE
Confidence 4679999999999999 5799999999999999999999999999999999999999999999999999999985 5799
Q ss_pred EEEecCH-HhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChh
Q 036267 84 FVFEDSV-SGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 84 ~~iGD~~-~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~ 131 (145)
+||||+. +|+++|+++|++++++.++... ......++++++++.++.
T Consensus 172 ~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~-~~~~~~~~~~i~~~~el~ 219 (224)
T PRK09449 172 LMVGDNLHSDILGGINAGIDTCWLNAHGRE-QPEGIAPTYQVSSLSELE 219 (224)
T ss_pred EEEcCCcHHHHHHHHHCCCcEEEECCCCCC-CCCCCCCeEEECCHHHHH
Confidence 9999998 6999999999999999865322 112235889999998853
No 22
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.92 E-value=4e-24 Score=150.09 Aligned_cols=125 Identities=22% Similarity=0.281 Sum_probs=113.3
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHc-CCCCCcE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEIL-NVSKDHT 83 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~-~~~~~~~ 83 (145)
.++++||+.++|++|+++ ++++|+||+....+...++.+++..+|+.++++++.+..||+|.+|..+++++ +++|++|
T Consensus 95 ~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 173 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEV 173 (224)
T ss_pred cCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchhe
Confidence 468999999999999999 99999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEecCH-HhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChh
Q 036267 84 FVFEDSV-SGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 84 ~~iGD~~-~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~ 131 (145)
+||||+. +|+++|+++|+.++++.++..... ....++++++++.++.
T Consensus 174 v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~-~~~~~~~~~~~~~el~ 221 (224)
T TIGR02254 174 LMIGDSLTADIKGGQNAGLDTCWMNPDMHPNP-DDIIPTYEIRSLEELY 221 (224)
T ss_pred EEECCCcHHHHHHHHHCCCcEEEECCCCCCCC-CCCCCceEECCHHHHH
Confidence 9999998 799999999999999998743322 3345788999988853
No 23
>PLN02811 hydrolase
Probab=99.92 E-value=3.3e-24 Score=150.68 Aligned_cols=129 Identities=23% Similarity=0.331 Sum_probs=111.3
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHH-HHcCCcCccceeEecC--cccCCCCChHHHHHHHHHcC---C
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMI-TKLGLSGFFEAIIIGD--ECERAKPFPDPYLKAIEILN---V 78 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~i~~~~--~~~~~kp~~~~~~~~~~~~~---~ 78 (145)
...++||+.++|+.|+++|++++|+||.........+ +..++.++|+.+++++ +....||+|++|..++++++ +
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 155 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPV 155 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCC
Confidence 5678999999999999999999999999876555444 4457889999999999 77889999999999999997 9
Q ss_pred CCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhHHH
Q 036267 79 SKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWA 134 (145)
Q Consensus 79 ~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~ 134 (145)
++++|+||||+..|+++|+++|+++|+|.++....... ..++++++++.++....
T Consensus 156 ~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~-~~~d~vi~~~~e~~~~~ 210 (220)
T PLN02811 156 DPGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYC-KGADQVLSSLLDFKPEE 210 (220)
T ss_pred CccceEEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhh-hchhhHhcCHhhCCHHH
Confidence 99999999999999999999999999999886443333 36889999999876554
No 24
>PLN02940 riboflavin kinase
Probab=99.92 E-value=5.3e-24 Score=160.25 Aligned_cols=129 Identities=35% Similarity=0.491 Sum_probs=117.3
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHH-HcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMIT-KLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~-~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
++.++||+.++|+.|+++|++++|+||.+...+...++ ..++.++|+.++++++....||+|.+|..+++++++++++|
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~ 170 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNC 170 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHE
Confidence 56799999999999999999999999999999999987 78999999999999999999999999999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhHHH
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWA 134 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~ 134 (145)
+||||+..|+++|+++|+.+++|.++..... ....++++++++.++....
T Consensus 171 l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~~-~~~~ad~~i~sl~el~~~~ 220 (382)
T PLN02940 171 LVIEDSLPGVMAGKAAGMEVIAVPSIPKQTH-LYSSADEVINSLLDLQPEK 220 (382)
T ss_pred EEEeCCHHHHHHHHHcCCEEEEECCCCcchh-hccCccEEeCCHhHcCHHH
Confidence 9999999999999999999999998854332 3356889999999976544
No 25
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.91 E-value=8.1e-24 Score=153.94 Aligned_cols=128 Identities=23% Similarity=0.233 Sum_probs=110.3
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc---ceeEecCcccCCCCChHHHHHHHHHcCCCCCc
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF---EAIIIGDECERAKPFPDPYLKAIEILNVSKDH 82 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f---~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 82 (145)
++++||+.++|+.|+++|++++|+||.+...+..+++.++...+| +.+ ++++....||+|++|..+++++|++|++
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEE-eccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 589999999999999999999999999999999999876433444 444 7777788999999999999999999999
Q ss_pred EEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhHHHH
Q 036267 83 TFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAA 135 (145)
Q Consensus 83 ~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~ 135 (145)
|+||||+.+|+++|+++|+.+|+|.+|+...... ..++++++++.++....+
T Consensus 222 ~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l-~~ad~vi~~~~~l~~~~~ 273 (286)
T PLN02779 222 CVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDF-SGADAVFDCLGDVPLEDF 273 (286)
T ss_pred EEEEeCCHHhHHHHHHcCCEEEEEccCCcccccc-CCCcEEECChhhcchhhh
Confidence 9999999999999999999999999986433222 368999999999875443
No 26
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.91 E-value=2.5e-23 Score=150.38 Aligned_cols=125 Identities=14% Similarity=0.187 Sum_probs=111.7
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
..++++||+.++|+.|+++|++++|+||+....+...++.+|+..+|+.+++.++. ++++..+..+++++++++++|
T Consensus 139 ~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~---~~k~~~~~~~l~~~~~~p~~~ 215 (273)
T PRK13225 139 PALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPI---LSKRRALSQLVAREGWQPAAV 215 (273)
T ss_pred ccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCC---CCCHHHHHHHHHHhCcChhHE
Confidence 35688999999999999999999999999999999999999999999998877654 245788999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCCCh-HHhhccccceeecCCCChh
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRNPE-RLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~~~-~~~~~~~~~~~~~~l~e~~ 131 (145)
+||||+.+|+++|+++|+.+|+|.+|... ..+....++++++++.++.
T Consensus 216 l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL~ 264 (273)
T PRK13225 216 MYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDLL 264 (273)
T ss_pred EEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHHH
Confidence 99999999999999999999999999543 4455567999999999964
No 27
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.91 E-value=2.6e-23 Score=142.12 Aligned_cols=126 Identities=20% Similarity=0.273 Sum_probs=104.4
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCCh---------------HHHHHHHHHcCCcCccceeEec-----CcccCCC
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPR---------------ANAELMITKLGLSGFFEAIIIG-----DECERAK 63 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~---------------~~~~~~l~~~~l~~~f~~i~~~-----~~~~~~k 63 (145)
..+.++||+.++|++|+++|++++|+||.+. ..+...++.+|+ +|+.++.+ ++....|
T Consensus 26 ~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~f~~i~~~~~~~~~~~~~~K 103 (181)
T PRK08942 26 DEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGG--RLDGIYYCPHHPEDGCDCRK 103 (181)
T ss_pred HHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC--ccceEEECCCCCCCCCcCCC
Confidence 4578999999999999999999999999863 334455666676 47777654 2346789
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhcccc--ceeecCCCChh
Q 036267 64 PFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKA--SFIIKDYEDPK 131 (145)
Q Consensus 64 p~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~--~~~~~~l~e~~ 131 (145)
|+|.+|..+++++++++++|+||||+.+|+++|+++|+.++++.+|..........+ +++++++.++.
T Consensus 104 P~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el~ 173 (181)
T PRK08942 104 PKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADLP 173 (181)
T ss_pred CCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHHH
Confidence 999999999999999999999999999999999999999999998865444444456 88999998864
No 28
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.90 E-value=3.1e-23 Score=139.62 Aligned_cols=103 Identities=26% Similarity=0.489 Sum_probs=99.7
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
...+++||+.++|+.|+++|++++++||.+...++..++.+|+..+|+.++++++.+..||++..|..++++++++|++|
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~ 153 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEI 153 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGE
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEE
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGL 106 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v 106 (145)
++|||+..|+++|+++|+++|+|
T Consensus 154 ~~vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 154 LFVGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp EEEESSHHHHHHHHHTTSEEEEE
T ss_pred EEEeCCHHHHHHHHHcCCeEEeC
Confidence 99999999999999999999986
No 29
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.90 E-value=1.1e-22 Score=168.56 Aligned_cols=134 Identities=30% Similarity=0.422 Sum_probs=124.7
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc-CccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEE
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS-GFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
.++||+.++|+.|+++|++++|+||.....++..++.+|+. .+|+.++++++....||+|++|+.++++++++|++|+|
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~ 240 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVV 240 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence 47999999999999999999999999999999999999996 78999999999999999999999999999999999999
Q ss_pred EecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhHHHHhhhhc
Q 036267 86 FEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAALEELD 140 (145)
Q Consensus 86 iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~ 140 (145)
|||+..|+++|+++||++|+|.++....++...+++++++++.++....++....
T Consensus 241 IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el~~~~~~~~~~ 295 (1057)
T PLN02919 241 IEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNISLSDILTGGS 295 (1057)
T ss_pred EcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHCCHHHHHhcCC
Confidence 9999999999999999999999998777777778999999999998777766443
No 30
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.90 E-value=7.6e-23 Score=144.03 Aligned_cols=125 Identities=22% Similarity=0.256 Sum_probs=112.0
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
.++++|++.++|+.++.+ ++++++||+....+...++.+||.++||.++.+++.+..||+|.+|..+++++|++|++|+
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l 175 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEAL 175 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEE
Confidence 378999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCH-HhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCCh
Q 036267 85 VFEDSV-SGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDP 130 (145)
Q Consensus 85 ~iGD~~-~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~ 130 (145)
||||++ +||.+|+++||++|++..+..........+++.+.++.++
T Consensus 176 ~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~l 222 (229)
T COG1011 176 FVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAEL 222 (229)
T ss_pred EECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEcCHHHH
Confidence 999999 7889999999999999877532211113577888888885
No 31
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.90 E-value=7.7e-23 Score=139.79 Aligned_cols=100 Identities=34% Similarity=0.463 Sum_probs=93.9
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEE
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
.+++||+.++|+.|+++|++++|+||+. .....++.+|+..+|+.++++++....||+|..|..+++++++++++|+|
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~ 163 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIG 163 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 5789999999999999999999999874 35678999999999999999999989999999999999999999999999
Q ss_pred EecCHHhHHHHHhcCCEEEEEc
Q 036267 86 FEDSVSGIKAGVAADLHVVGLA 107 (145)
Q Consensus 86 iGD~~~Di~~a~~~G~~~i~v~ 107 (145)
|||+.+|+++|+++|+++|+|.
T Consensus 164 vgD~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 164 IEDAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred EecCHHHHHHHHHcCCEEEecC
Confidence 9999999999999999999984
No 32
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.89 E-value=2.2e-22 Score=137.09 Aligned_cols=100 Identities=35% Similarity=0.589 Sum_probs=94.6
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEE
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
++++||+.++|+.|+++|++++++||+.... ...+.++|+..+|+.++++++.+..||+|..|..++++++++|++|+|
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 162 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLF 162 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEE
Confidence 6899999999999999999999999999888 666667999999999999999899999999999999999999999999
Q ss_pred EecCHHhHHHHHhcCCEEEEE
Q 036267 86 FEDSVSGIKAGVAADLHVVGL 106 (145)
Q Consensus 86 iGD~~~Di~~a~~~G~~~i~v 106 (145)
|||+..|+++|+++|+.+|+|
T Consensus 163 vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 163 VDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred EcCCHHHHHHHHHcCCEEEeC
Confidence 999999999999999999875
No 33
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.89 E-value=7.3e-23 Score=143.98 Aligned_cols=109 Identities=37% Similarity=0.585 Sum_probs=104.0
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCc
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDH 82 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 82 (145)
...++++||+.++|+.|+++|++++++|++++..+...|+.+|+.++|+.++++++...+||+|+.|+.+++++|++|++
T Consensus 82 ~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~ 161 (221)
T COG0637 82 LEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEE 161 (221)
T ss_pred hcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHH
Confidence 35678999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred EEEEecCHHhHHHHHhcCCEEEEEcCCCC
Q 036267 83 TFVFEDSVSGIKAGVAADLHVVGLATRNP 111 (145)
Q Consensus 83 ~~~iGD~~~Di~~a~~~G~~~i~v~~g~~ 111 (145)
|++|+|+.++|++|+++||.++++..+..
T Consensus 162 CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~ 190 (221)
T COG0637 162 CVVVEDSPAGIQAAKAAGMRVVGVPAGHD 190 (221)
T ss_pred eEEEecchhHHHHHHHCCCEEEEecCCCC
Confidence 99999999999999999999999998543
No 34
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.89 E-value=2.4e-22 Score=140.82 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=103.2
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHc---CCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCC
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKL---GLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKD 81 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~---~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 81 (145)
..++|||+.++|++|+++|++++|+||++...++..++.. ++..+|+.++.. ....||+|+.|..+++++|++|+
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~--~~g~KP~p~~y~~i~~~lgv~p~ 170 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDT--TVGLKTEAQSYVKIAGQLGSPPR 170 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEe--CcccCCCHHHHHHHHHHhCcChh
Confidence 4579999999999999999999999999999999888875 677888877743 23479999999999999999999
Q ss_pred cEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhc-cccceeecCCCC
Q 036267 82 HTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLD-AKASFIIKDYED 129 (145)
Q Consensus 82 ~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~-~~~~~~~~~l~e 129 (145)
+|+||||+..|+++|+++|+.++++.++++...... ...+.++.+|.+
T Consensus 171 e~lfVgDs~~Di~AA~~AG~~ti~v~r~g~~~~~~~~~~~~~~~~~~~~ 219 (220)
T TIGR01691 171 EILFLSDIINELDAARKAGLHTGQLVRPGNDPVVDPSFPVYPQFPDLNA 219 (220)
T ss_pred HEEEEeCCHHHHHHHHHcCCEEEEEECCCCCCCCcccCCCCCeecCccc
Confidence 999999999999999999999999988764422222 122567777765
No 35
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.89 E-value=1.3e-22 Score=138.66 Aligned_cols=101 Identities=35% Similarity=0.605 Sum_probs=95.8
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
..++++||+.++|+.|+++|++++++||+ ..++..++.+|+..+|+.++++++....||+|.+|..+++++++++++|
T Consensus 85 ~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 162 (185)
T TIGR02009 85 TGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNEC 162 (185)
T ss_pred cCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHe
Confidence 35789999999999999999999999998 6788999999999999999999998899999999999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEE
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGL 106 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v 106 (145)
+||||+.+|+++|+++|+++++|
T Consensus 163 v~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 163 VVFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred EEEeCcHhhHHHHHHCCCeEeeC
Confidence 99999999999999999999875
No 36
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.89 E-value=1.9e-22 Score=139.80 Aligned_cols=107 Identities=12% Similarity=0.170 Sum_probs=98.2
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHH-cCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITK-LGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~-~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
..++||+.++|+.|+++|++++|+||++.......+.. .++..+|+.++++++.+..||+|..|+.+++++|++|++|+
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 162 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAV 162 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeE
Confidence 45899999999999999999999999998877766654 47889999999999999999999999999999999999999
Q ss_pred EEecCHHhHHHHHhcCCEEEEEcCCCCh
Q 036267 85 VFEDSVSGIKAGVAADLHVVGLATRNPE 112 (145)
Q Consensus 85 ~iGD~~~Di~~a~~~G~~~i~v~~g~~~ 112 (145)
||||+..|+++|+++|+.++++..+..-
T Consensus 163 ~vgD~~~di~aA~~aG~~~i~~~~~~~~ 190 (199)
T PRK09456 163 FFDDNADNIEAANALGITSILVTDKQTI 190 (199)
T ss_pred EeCCCHHHHHHHHHcCCEEEEecCCccH
Confidence 9999999999999999999999876543
No 37
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.89 E-value=2.3e-22 Score=134.92 Aligned_cols=104 Identities=16% Similarity=0.230 Sum_probs=93.4
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCC---------------hHHHHHHHHHcCCcCccceeE-e----cCcccCCC
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSP---------------RANAELMITKLGLSGFFEAII-I----GDECERAK 63 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~---------------~~~~~~~l~~~~l~~~f~~i~-~----~~~~~~~k 63 (145)
..++++||+.++|++|+++|++++|+||.+ ...+...++.+|+. |+.++ + +++....|
T Consensus 26 ~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~ii~~~~~~~~~~~~~K 103 (161)
T TIGR01261 26 EKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDDVLICPHFPDDNCDCRK 103 (161)
T ss_pred HHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeEEEECCCCCCCCCCCCC
Confidence 467899999999999999999999999973 56778889999996 76554 4 46778899
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCC
Q 036267 64 PFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 64 p~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g 109 (145)
|++.++..+++++++++++|+||||+.+|+++|+++|++++++.++
T Consensus 104 P~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~ 149 (161)
T TIGR01261 104 PKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDEE 149 (161)
T ss_pred CCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEChh
Confidence 9999999999999999999999999999999999999999999876
No 38
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.89 E-value=1.8e-22 Score=140.09 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=93.7
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
.++++||+.++|+.|+++|++++|+||.+.. +...++.+|+..+|+.++++++.+..||+|.+|..+++++|++|++|+
T Consensus 103 ~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 181 (203)
T TIGR02252 103 PWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEAL 181 (203)
T ss_pred cceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEE
Confidence 4578999999999999999999999998765 578899999999999999999999999999999999999999999999
Q ss_pred EEecCH-HhHHHHHhcCCEEEE
Q 036267 85 VFEDSV-SGIKAGVAADLHVVG 105 (145)
Q Consensus 85 ~iGD~~-~Di~~a~~~G~~~i~ 105 (145)
||||+. +||++|+++|+.+|+
T Consensus 182 ~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 182 HIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred EECCCchHHHHHHHHcCCeeeC
Confidence 999998 899999999999874
No 39
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.89 E-value=8.2e-23 Score=143.52 Aligned_cols=124 Identities=21% Similarity=0.373 Sum_probs=106.1
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccc-eeEecCcccCCCCChHHHHHHHHHcCCCCCc
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFE-AIIIGDECERAKPFPDPYLKAIEILNVSKDH 82 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~-~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 82 (145)
..++++||+.++|+.| +++++|+||++...+...++.+|+..+|+ .++++++.+..||+|++|..++++++++|++
T Consensus 85 ~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 161 (221)
T PRK10563 85 SELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVEN 161 (221)
T ss_pred ccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHH
Confidence 3578999999999999 48999999999999999999999999995 6788888888999999999999999999999
Q ss_pred EEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChh
Q 036267 83 TFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 83 ~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~ 131 (145)
|+||||+..||++|+++|++++++.++..... ..+.+..+++++.|+.
T Consensus 162 ~l~igDs~~di~aA~~aG~~~i~~~~~~~~~~-~~~~~~~~~~~~~~l~ 209 (221)
T PRK10563 162 CILVDDSSAGAQSGIAAGMEVFYFCADPHNKP-IDHPLVTTFTDLAQLP 209 (221)
T ss_pred eEEEeCcHhhHHHHHHCCCEEEEECCCCCCcc-hhhhhhHHHHHHHHHH
Confidence 99999999999999999999999976532222 2233455677777754
No 40
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.88 E-value=3.3e-22 Score=142.13 Aligned_cols=121 Identities=18% Similarity=0.241 Sum_probs=104.0
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
.+.++||+.++|+.|++. ++++++||+... ++.+|+.++|+.++++++....||+|.+|..+++++|+++++|+
T Consensus 111 ~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~ 184 (238)
T PRK10748 111 RIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEIL 184 (238)
T ss_pred cCCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEE
Confidence 478899999999999975 999999998754 47889999999999999999999999999999999999999999
Q ss_pred EEecCH-HhHHHHHhcCCEEEEEcCCCCh---HHhhccccceeecCCCChh
Q 036267 85 VFEDSV-SGIKAGVAADLHVVGLATRNPE---RLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 85 ~iGD~~-~Di~~a~~~G~~~i~v~~g~~~---~~~~~~~~~~~~~~l~e~~ 131 (145)
||||+. .|+.+|+++|+.++++..+... .......+++.+.++.|+.
T Consensus 185 ~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el~ 235 (238)
T PRK10748 185 HVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASLT 235 (238)
T ss_pred EEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHHH
Confidence 999995 9999999999999999876422 1112235788888888753
No 41
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.88 E-value=2.9e-22 Score=135.50 Aligned_cols=112 Identities=10% Similarity=0.085 Sum_probs=100.1
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCC-ChHHHHHHHHHcCCc---------CccceeEecCcccCCCCChHHHHHH
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNS-PRANAELMITKLGLS---------GFFEAIIIGDECERAKPFPDPYLKA 72 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~-~~~~~~~~l~~~~l~---------~~f~~i~~~~~~~~~kp~~~~~~~~ 72 (145)
...++++||+.++|+.|+++|++++|+||+ ....++..++.+++. ++|+.++++++....||.+..+..+
T Consensus 41 ~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~ 120 (174)
T TIGR01685 41 GTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKV 120 (174)
T ss_pred CCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHh
Confidence 457889999999999999999999999998 889999999999998 9999999988866667777777777
Q ss_pred HHHc--CCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHH
Q 036267 73 IEIL--NVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERL 114 (145)
Q Consensus 73 ~~~~--~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~ 114 (145)
.+.+ +++|++|+||||+..|+++|+++|+.++++.+|.....
T Consensus 121 ~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~~~~~ 164 (174)
T TIGR01685 121 NKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMDKGT 164 (174)
T ss_pred hhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCccHHH
Confidence 7777 79999999999999999999999999999999865443
No 42
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.88 E-value=4.1e-22 Score=132.04 Aligned_cols=105 Identities=22% Similarity=0.254 Sum_probs=88.2
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCCh---------------HHHHHHHHHcCCcCc--c-ceeEecCcccCCCCCh
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPR---------------ANAELMITKLGLSGF--F-EAIIIGDECERAKPFP 66 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~---------------~~~~~~l~~~~l~~~--f-~~i~~~~~~~~~kp~~ 66 (145)
.++++||+.++|+.|+++|++++|+||.+. ..+...++.+++... | .....++.....||+|
T Consensus 25 ~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~ 104 (147)
T TIGR01656 25 DWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKP 104 (147)
T ss_pred HeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCH
Confidence 467899999999999999999999999873 466778888888621 1 1111234456689999
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCC
Q 036267 67 DPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g 109 (145)
++|+.+++++++++++|+||||+..|+++|+++|+++++|..|
T Consensus 105 ~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 105 GLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence 9999999999999999999999999999999999999999754
No 43
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.88 E-value=2.5e-22 Score=140.12 Aligned_cols=105 Identities=21% Similarity=0.247 Sum_probs=94.9
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHH--HHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCc
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRAN--AELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDH 82 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~--~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 82 (145)
.++++||+.++|+.|+++|++++|+||+.... ....+...++..+|+.++++++.+..||+|.+|..+++++|++|++
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~ 171 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEE 171 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHH
Confidence 57899999999999999999999999987544 3334455678899999999998888999999999999999999999
Q ss_pred EEEEecCHHhHHHHHhcCCEEEEEcCC
Q 036267 83 TFVFEDSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 83 ~~~iGD~~~Di~~a~~~G~~~i~v~~g 109 (145)
|+||||+..|+.+|+++|+.++++.++
T Consensus 172 ~l~i~D~~~di~aA~~aG~~~i~v~~~ 198 (211)
T TIGR02247 172 CVFLDDLGSNLKPAAALGITTIKVSDE 198 (211)
T ss_pred eEEEcCCHHHHHHHHHcCCEEEEECCH
Confidence 999999999999999999999999765
No 44
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.88 E-value=1.2e-21 Score=150.94 Aligned_cols=124 Identities=13% Similarity=0.118 Sum_probs=109.2
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
...+++||+.++|+.|+++|++++|+||++...++..++.+|+..||+.++++++.. .||+|+.+..++++++ +++|
T Consensus 327 ~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~-~~~kP~~~~~al~~l~--~~~~ 403 (459)
T PRK06698 327 GKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQIN-SLNKSDLVKSILNKYD--IKEA 403 (459)
T ss_pred cCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCC-CCCCcHHHHHHHHhcC--cceE
Confidence 357899999999999999999999999999999999999999999999999998863 4678889999998764 6899
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChh
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~ 131 (145)
+||||+.+|+++|+++|+.++++.++....... ..++++++++.++.
T Consensus 404 v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~-~~~d~~i~~l~el~ 450 (459)
T PRK06698 404 AVVGDRLSDINAAKDNGLIAIGCNFDFAQEDEL-AQADIVIDDLLELK 450 (459)
T ss_pred EEEeCCHHHHHHHHHCCCeEEEEeCCCCccccc-CCCCEEeCCHHHHH
Confidence 999999999999999999999999986433222 35899999999853
No 45
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.86 E-value=2.8e-21 Score=132.48 Aligned_cols=102 Identities=31% Similarity=0.475 Sum_probs=95.6
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
..++++|+ .++|+.|++. ++++|+||++...++..++.+|+..||+.++++++....||+|.+|..+++++++++++|
T Consensus 85 ~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~ 162 (188)
T PRK10725 85 DSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQC 162 (188)
T ss_pred ccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHe
Confidence 34678886 6899999875 899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEc
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLA 107 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~ 107 (145)
+||||+.+|+++|+++|+++|+|.
T Consensus 163 l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 163 VVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred EEEeccHhhHHHHHHCCCEEEeec
Confidence 999999999999999999999985
No 46
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.86 E-value=2.5e-21 Score=132.50 Aligned_cols=99 Identities=28% Similarity=0.397 Sum_probs=93.0
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccC----CCCChHHHHHHHHHcCCCC
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECER----AKPFPDPYLKAIEILNVSK 80 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~----~kp~~~~~~~~~~~~~~~~ 80 (145)
.++++||+.++|++|+ .+++|+||++...+...++.+|+..+|+.++++++... .||+|.+|..+++++|++|
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~ 158 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDP 158 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCc
Confidence 4678999999999998 47999999999999999999999999999999988866 5999999999999999999
Q ss_pred CcEEEEecCHHhHHHHHhcCCEEEEE
Q 036267 81 DHTFVFEDSVSGIKAGVAADLHVVGL 106 (145)
Q Consensus 81 ~~~~~iGD~~~Di~~a~~~G~~~i~v 106 (145)
++|+||||+..|+++|+++|+++++|
T Consensus 159 ~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 159 ERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred cceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 99999999999999999999999875
No 47
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.85 E-value=1.7e-20 Score=122.08 Aligned_cols=99 Identities=17% Similarity=0.280 Sum_probs=87.9
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCC--------hHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHc
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSP--------RANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEIL 76 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~--------~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~ 76 (145)
...++||+.++|++|+++|++++++||++ ...+...++.+++. ++.++.+. ...||++++|..+++++
T Consensus 23 ~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~--~~~KP~~~~~~~~~~~~ 98 (132)
T TIGR01662 23 ERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--IDVLYACP--HCRKPKPGMFLEALKRF 98 (132)
T ss_pred HheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EEEEEECC--CCCCCChHHHHHHHHHc
Confidence 46789999999999999999999999998 78899999999986 33334433 46799999999999999
Q ss_pred -CCCCCcEEEEec-CHHhHHHHHhcCCEEEEEc
Q 036267 77 -NVSKDHTFVFED-SVSGIKAGVAADLHVVGLA 107 (145)
Q Consensus 77 -~~~~~~~~~iGD-~~~Di~~a~~~G~~~i~v~ 107 (145)
++++++|+|||| +.+|+.+|+++|+.+|++.
T Consensus 99 ~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 99 NEIDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred CCCChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 599999999999 6899999999999999985
No 48
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.82 E-value=1.3e-19 Score=120.59 Aligned_cols=93 Identities=25% Similarity=0.429 Sum_probs=87.6
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
....+||+.++|+.|+++|++++|+||+....+...++.+ +..+|+.++++++.. .||+|++|..+++++++++ +|+
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l 138 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EVL 138 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEE
Confidence 4557899999999999999999999999999999999988 889999999988887 9999999999999999999 999
Q ss_pred EEecCHHhHHHHHhcC
Q 036267 85 VFEDSVSGIKAGVAAD 100 (145)
Q Consensus 85 ~iGD~~~Di~~a~~~G 100 (145)
||||+..|+++|+++|
T Consensus 139 ~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 139 HVGDNLNDIEGARNAG 154 (154)
T ss_pred EEeCCHHHHHHHHHcc
Confidence 9999999999999987
No 49
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.82 E-value=9.3e-20 Score=122.93 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=85.5
Q ss_pred cCc-ccCCHHHHHHHHHhCCCcEEEEeCCChH------------HHHHHHHHcCCcCccceeEecCcccCCCCChHHHHH
Q 036267 5 QLK-ALNGLDNVKKWVEGCGLKRAAVTNSPRA------------NAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLK 71 (145)
Q Consensus 5 ~~~-~~~g~~~~l~~l~~~g~~~~i~s~~~~~------------~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~ 71 (145)
.++ ++||+.++|+.|+++|++++|+||++.. .+..+++.+|+.. +.++++++....||+|.++..
T Consensus 39 ~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~--~~ii~~~~~~~~KP~p~~~~~ 116 (166)
T TIGR01664 39 DWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI--QVLAATHAGLYRKPMTGMWEY 116 (166)
T ss_pred HeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE--EEEEecCCCCCCCCccHHHHH
Confidence 344 6899999999999999999999998763 4678899999853 556666665678999999999
Q ss_pred HHHHcC--CCCCcEEEEecCH--------HhHHHHHhcCCEEEE
Q 036267 72 AIEILN--VSKDHTFVFEDSV--------SGIKAGVAADLHVVG 105 (145)
Q Consensus 72 ~~~~~~--~~~~~~~~iGD~~--------~Di~~a~~~G~~~i~ 105 (145)
++++++ +++++++||||+. +|+++|+++|+++++
T Consensus 117 ~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 117 LQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred HHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 999999 9999999999996 699999999998865
No 50
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.82 E-value=3.8e-20 Score=129.65 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=97.9
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
......+++.+++++|+.+|..++++||.....- ..+..+|+..|||.++.+...+..||+|.+|+.+++++++.|++|
T Consensus 110 ~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~ 188 (237)
T KOG3085|consen 110 SAWKYLDGMQELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEEC 188 (237)
T ss_pred cCceeccHHHHHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHe
Confidence 4667889999999999999999999999875444 888889999999999999999999999999999999999999999
Q ss_pred EEEecCH-HhHHHHHhcCCEEEEEcCCC
Q 036267 84 FVFEDSV-SGIKAGVAADLHVVGLATRN 110 (145)
Q Consensus 84 ~~iGD~~-~Di~~a~~~G~~~i~v~~g~ 110 (145)
++|||+. +|+++|+++||.++.|..+.
T Consensus 189 vhIgD~l~nD~~gA~~~G~~ailv~~~~ 216 (237)
T KOG3085|consen 189 VHIGDLLENDYEGARNLGWHAILVDNSI 216 (237)
T ss_pred EEecCccccccHhHHHcCCEEEEEcccc
Confidence 9999999 89999999999999998664
No 51
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.82 E-value=2.4e-19 Score=124.04 Aligned_cols=92 Identities=28% Similarity=0.386 Sum_probs=86.5
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEE
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVF 86 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 86 (145)
++.+++.++|+.|+++|++++|+||++...++..++.+|+..+|+.++++++... ||+|..+..+++++++++++|+||
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~v 184 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDCPP-KPNPEPLILAAKALGVEACHAAMV 184 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecCCCC-CcCHHHHHHHHHHhCcCcccEEEE
Confidence 4556679999999999999999999999999999999999999999999998776 999999999999999999999999
Q ss_pred ecCHHhHHHHHhc
Q 036267 87 EDSVSGIKAGVAA 99 (145)
Q Consensus 87 GD~~~Di~~a~~~ 99 (145)
||+.+|+++|+++
T Consensus 185 GD~~~Di~aA~~a 197 (197)
T TIGR01548 185 GDTVDDIITGRKA 197 (197)
T ss_pred eCCHHHHHHHHhC
Confidence 9999999999875
No 52
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.82 E-value=2.3e-19 Score=121.55 Aligned_cols=101 Identities=15% Similarity=0.165 Sum_probs=88.0
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCC-hHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCc
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSP-RANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDH 82 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~-~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 82 (145)
....++||+.++|++|++.|++++|+||++ ...+..+++.+++..++ ...||+|.+|..+++++++++++
T Consensus 40 ~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~---------~~~KP~p~~~~~~l~~~~~~~~~ 110 (170)
T TIGR01668 40 DHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLP---------HAVKPPGCAFRRAHPEMGLTSEQ 110 (170)
T ss_pred CCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEc---------CCCCCChHHHHHHHHHcCCCHHH
Confidence 455899999999999999999999999998 57777777777764321 34799999999999999999999
Q ss_pred EEEEecCH-HhHHHHHhcCCEEEEEcCCCChH
Q 036267 83 TFVFEDSV-SGIKAGVAADLHVVGLATRNPER 113 (145)
Q Consensus 83 ~~~iGD~~-~Di~~a~~~G~~~i~v~~g~~~~ 113 (145)
|+||||+. .|+.+|+++|+.+++|.+|....
T Consensus 111 ~l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~ 142 (170)
T TIGR01668 111 VAVVGDRLFTDVMGGNRNGSYTILVEPLVHPD 142 (170)
T ss_pred EEEECCcchHHHHHHHHcCCeEEEEccCcCCc
Confidence 99999998 69999999999999999996443
No 53
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.80 E-value=1.6e-18 Score=128.73 Aligned_cols=105 Identities=17% Similarity=0.254 Sum_probs=91.0
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCC---------------ChHHHHHHHHHcCCcCccceeEe-----cCcccCC
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNS---------------PRANAELMITKLGLSGFFEAIII-----GDECERA 62 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~---------------~~~~~~~~l~~~~l~~~f~~i~~-----~~~~~~~ 62 (145)
...++++||+.++|++|+++|++++|+||+ +...+..+++..++. |+.++. .++...+
T Consensus 26 ~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~--fd~i~i~~~~~sd~~~~r 103 (354)
T PRK05446 26 LDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK--FDEVLICPHFPEDNCSCR 103 (354)
T ss_pred cccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc--eeeEEEeCCcCcccCCCC
Confidence 346889999999999999999999999996 345666778888874 666543 3556789
Q ss_pred CCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCC
Q 036267 63 KPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 63 kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g 109 (145)
||+|.++..+++.+++++++++||||+.+|+++|+++|++++++...
T Consensus 104 KP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~~ 150 (354)
T PRK05446 104 KPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYARE 150 (354)
T ss_pred CCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEECC
Confidence 99999999999999999999999999999999999999999999654
No 54
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.79 E-value=6.3e-19 Score=121.84 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=94.4
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCc----cceeEecCcccCCCCChHHHHHHHHHcCCC
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGF----FEAIIIGDECERAKPFPDPYLKAIEILNVS 79 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~----f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~ 79 (145)
..+.++||+.++|++|++. ++++++||.+.......++.+++..+ |+.++++++ .||+|+.+..+++++|
T Consensus 71 ~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~---~~~kp~~~~~a~~~~~-- 144 (197)
T PHA02597 71 RYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGH---DESKEKLFIKAKEKYG-- 144 (197)
T ss_pred HhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEecc---CcccHHHHHHHHHHhC--
Confidence 4567999999999999987 57888898876666666777777654 466666665 3677899999999999
Q ss_pred CCcEEEEecCHHhHHHHHhc--CCEEEEEcCCCChHHhhccccceeecCCCCh
Q 036267 80 KDHTFVFEDSVSGIKAGVAA--DLHVVGLATRNPERLLLDAKASFIIKDYEDP 130 (145)
Q Consensus 80 ~~~~~~iGD~~~Di~~a~~~--G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~ 130 (145)
+++|+||||+.+|+++|+++ |++++++.+|.. .....+.+.+.++.|+
T Consensus 145 ~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~---~~~~~~~~~~~~~~~~ 194 (197)
T PHA02597 145 DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER---DHIPKLAHRVKSWNDI 194 (197)
T ss_pred CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh---ccccchhhhhccHHHH
Confidence 78899999999999999999 999999999964 1222356778887774
No 55
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.78 E-value=1.7e-18 Score=126.81 Aligned_cols=105 Identities=13% Similarity=0.021 Sum_probs=97.3
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcC-ccceeEecC-------cccCCCCChHHHHHHHHHc
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSG-FFEAIIIGD-------ECERAKPFPDPYLKAIEIL 76 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~-~f~~i~~~~-------~~~~~kp~~~~~~~~~~~~ 76 (145)
...++|++.++|+.|+++|++++++||.+....+..++.+++.. +|+.+++.+ +....||+|..+..+++++
T Consensus 185 ~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~ 264 (300)
T PHA02530 185 EDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEK 264 (300)
T ss_pred cCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999987 999988887 3456799999999999999
Q ss_pred CC-CCCcEEEEecCHHhHHHHHhcCCEEEEEcCC
Q 036267 77 NV-SKDHTFVFEDSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 77 ~~-~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g 109 (145)
+. ++++|+||||+.+|+++|+++|+.+++|.||
T Consensus 265 ~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g 298 (300)
T PHA02530 265 IAPKYDVLLAVDDRDQVVDMWRRIGLECWQVAPG 298 (300)
T ss_pred hccCceEEEEEcCcHHHHHHHHHhCCeEEEecCC
Confidence 88 6799999999999999999999999999987
No 56
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.77 E-value=4.9e-19 Score=128.57 Aligned_cols=122 Identities=14% Similarity=0.087 Sum_probs=96.1
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCChHHHH-HHHHHcCCcCccceeE---ecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPRANAE-LMITKLGLSGFFEAII---IGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~-~~l~~~~l~~~f~~i~---~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
-|+++.++++.|+++|. ++|+||.+..... ..+...++..+|+.+. +.+....+||+|.++..+++++++++++|
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 222 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPART 222 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhE
Confidence 38899999999998887 7899998764432 2233446666665543 33444578999999999999999999999
Q ss_pred EEEecCH-HhHHHHHhcCCEEEEEcCCCC-hHHhhc--------cccceeecCCCCh
Q 036267 84 FVFEDSV-SGIKAGVAADLHVVGLATRNP-ERLLLD--------AKASFIIKDYEDP 130 (145)
Q Consensus 84 ~~iGD~~-~Di~~a~~~G~~~i~v~~g~~-~~~~~~--------~~~~~~~~~l~e~ 130 (145)
+||||++ .||++|+++|+++++|.||.. .+++.. .+|+++++++.++
T Consensus 223 lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 223 LMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred EEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 9999996 899999999999999999954 333332 3699999999874
No 57
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.76 E-value=7.1e-19 Score=119.33 Aligned_cols=88 Identities=14% Similarity=0.167 Sum_probs=83.0
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
.+.++||+.++|+ +++|+||++...++..++++|+..+|+.++++++.+..||+|..|+.+++++|++|++|+
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l 160 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVL 160 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeE
Confidence 5679999999998 389999999999999999999999999999999888999999999999999999999999
Q ss_pred EEecCHHhHHHHHhc
Q 036267 85 VFEDSVSGIKAGVAA 99 (145)
Q Consensus 85 ~iGD~~~Di~~a~~~ 99 (145)
||||+.+|+.+|+++
T Consensus 161 ~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 161 MVAAHQWDLIGARKF 175 (175)
T ss_pred eEecChhhHHHHhcC
Confidence 999999999999864
No 58
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.76 E-value=1.7e-17 Score=116.32 Aligned_cols=118 Identities=22% Similarity=0.202 Sum_probs=94.4
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEe-------cC---cccCCCCChHHHHHHHH
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIII-------GD---ECERAKPFPDPYLKAIE 74 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~-------~~---~~~~~kp~~~~~~~~~~ 74 (145)
.++++||+.++|+.|+++|++++|+||+....+..+++.+|+..+|...+. .. ....++|++..+..+++
T Consensus 83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 162 (219)
T TIGR00338 83 NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLR 162 (219)
T ss_pred cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHH
Confidence 467899999999999999999999999999999999999999888853221 11 11235678999999999
Q ss_pred HcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCC
Q 036267 75 ILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDY 127 (145)
Q Consensus 75 ~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l 127 (145)
++++++++|+||||+.+|+++|+++|+.++ + +. .+.+. ..+++++.+.
T Consensus 163 ~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~-~--~~-~~~~~-~~a~~~i~~~ 210 (219)
T TIGR00338 163 KEGISPENTVAVGDGANDLSMIKAAGLGIA-F--NA-KPKLQ-QKADICINKK 210 (219)
T ss_pred HcCCCHHHEEEEECCHHHHHHHHhCCCeEE-e--CC-CHHHH-HhchhccCCC
Confidence 999999999999999999999999999753 3 22 22222 2477776644
No 59
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.76 E-value=1.1e-17 Score=118.25 Aligned_cols=101 Identities=13% Similarity=0.059 Sum_probs=87.6
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCC----ChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCC
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNS----PRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSK 80 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~----~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~ 80 (145)
...+++++.++|+.++++|++++++||. ....++.+++.+|+..+|+.++++++....||.+. .+++++++
T Consensus 112 ~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~i-- 186 (237)
T TIGR01672 112 FSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKNI-- 186 (237)
T ss_pred CCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHH---HHHHhCCC--
Confidence 4456777999999999999999999998 66788999999999999999999888777777765 34566665
Q ss_pred CcEEEEecCHHhHHHHHhcCCEEEEEcCCCCh
Q 036267 81 DHTFVFEDSVSGIKAGVAADLHVVGLATRNPE 112 (145)
Q Consensus 81 ~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~ 112 (145)
++||||+.+||.+|+++|+.+++|.||.++
T Consensus 187 --~i~vGDs~~DI~aAk~AGi~~I~V~~g~~s 216 (237)
T TIGR01672 187 --RIHYGDSDNDITAAKEAGARGIRILRASNS 216 (237)
T ss_pred --eEEEeCCHHHHHHHHHCCCCEEEEEecCCC
Confidence 899999999999999999999999999654
No 60
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.76 E-value=1.5e-17 Score=107.34 Aligned_cols=102 Identities=27% Similarity=0.426 Sum_probs=94.1
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCC----------------CCChHH
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERA----------------KPFPDP 68 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~----------------kp~~~~ 68 (145)
..+++|++.++|++|+++|++++++|++....++..++.+++..+++.+++.+..... ||++..
T Consensus 22 ~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (139)
T cd01427 22 ELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDK 101 (139)
T ss_pred cCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHHH
Confidence 4589999999999999999999999999999999999999998889988887765444 999999
Q ss_pred HHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEE
Q 036267 69 YLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGL 106 (145)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v 106 (145)
+..++++++.+++++++|||+.+|+++++++|+.+++|
T Consensus 102 ~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 102 LLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 99999999999999999999999999999999998875
No 61
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.76 E-value=2.5e-18 Score=114.06 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=86.4
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcC-ccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSG-FFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
.+.++||+.++|+.|+ ++++++|+|++....++.+++.+++.. +|+.++++++....||. |.++++.++.++++|
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~~ 118 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSNV 118 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhcE
Confidence 4578999999999999 579999999999999999999999865 56999999999888887 899999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEE
Q 036267 84 FVFEDSVSGIKAGVAADLHV 103 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~ 103 (145)
+||||+.+|+++++++|+..
T Consensus 119 i~i~Ds~~~~~aa~~ngI~i 138 (148)
T smart00577 119 IIIDDSPDSWPFHPENLIPI 138 (148)
T ss_pred EEEECCHHHhhcCccCEEEe
Confidence 99999999999999999543
No 62
>PLN02954 phosphoserine phosphatase
Probab=99.75 E-value=2.3e-17 Score=115.99 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=96.5
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc--Ccccee--E------ecCc----ccCCCCChHHHH
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS--GFFEAI--I------IGDE----CERAKPFPDPYL 70 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~--~~f~~i--~------~~~~----~~~~kp~~~~~~ 70 (145)
..+++||+.++|+.++++|++++|+|++....++.+++.+|+. .+|... + .+.+ ....++++..+.
T Consensus 82 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~ 161 (224)
T PLN02954 82 PPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQ 161 (224)
T ss_pred cCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHH
Confidence 3568999999999999999999999999999999999999986 355321 1 1111 123567889999
Q ss_pred HHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChh
Q 036267 71 KAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 71 ~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~ 131 (145)
.++++++. ++|+||||+.+|+++|+++|+.++...++..........++++++++.++.
T Consensus 162 ~~~~~~~~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el~ 220 (224)
T PLN02954 162 HIKKKHGY--KTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDLI 220 (224)
T ss_pred HHHHHcCC--CceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHHH
Confidence 99998875 689999999999999999888866554433333333456899999988853
No 63
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.75 E-value=1.6e-17 Score=114.79 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=89.2
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCC----------ChHHHHHHHH
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKP----------FPDPYLKAIE 74 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp----------~~~~~~~~~~ 74 (145)
+++++||+.++|+.|+++|++++|+|++....++.+++.+|+..+|...+..++.+..+| +...+..+++
T Consensus 78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 78 EISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred hCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999888866655543333333 3367888899
Q ss_pred HcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCC
Q 036267 75 ILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 75 ~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g 109 (145)
++++++++|+||||+.+|+++|+.+|+.++....+
T Consensus 158 ~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~ 192 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKNDLPMFEVADISISLGDEG 192 (201)
T ss_pred HhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCc
Confidence 99999999999999999999999999987776544
No 64
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.75 E-value=9.9e-19 Score=125.57 Aligned_cols=124 Identities=9% Similarity=0.079 Sum_probs=103.6
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc---cCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC---ERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~---~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
.|+++.++++.|++.+++++++||.........+..+|+..+|+.+...... ..+||+|.+|..+++++++++++|+
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~ 200 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAV 200 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEE
Confidence 3788999999999999999999999877776666777888888766654433 2479999999999999999999999
Q ss_pred EEecCH-HhHHHHHhcCCEEEEEcCCC-ChHH--hhccccceeecCCCChh
Q 036267 85 VFEDSV-SGIKAGVAADLHVVGLATRN-PERL--LLDAKASFIIKDYEDPK 131 (145)
Q Consensus 85 ~iGD~~-~Di~~a~~~G~~~i~v~~g~-~~~~--~~~~~~~~~~~~l~e~~ 131 (145)
||||+. +||.+|+++|+++++|.+|. ...+ .....|+++++++.++.
T Consensus 201 ~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el~ 251 (257)
T TIGR01458 201 MIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHAV 251 (257)
T ss_pred EECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHHH
Confidence 999997 89999999999999999985 3322 23456899999999864
No 65
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.74 E-value=8.3e-17 Score=115.14 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=60.5
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCH-HhHHHHHhcCCEEEEEcCCCCh-HHhhc--cccceeecCCCCh
Q 036267 61 RAKPFPDPYLKAIEILNVSKDHTFVFEDSV-SGIKAGVAADLHVVGLATRNPE-RLLLD--AKASFIIKDYEDP 130 (145)
Q Consensus 61 ~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~-~Di~~a~~~G~~~i~v~~g~~~-~~~~~--~~~~~~~~~l~e~ 130 (145)
.+||+|.+|+.+++++++++++++||||++ +||.+|+++|+++++|.+|... .++.. ..|+++++++.++
T Consensus 176 ~gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~l~~~ 249 (249)
T TIGR01457 176 IGKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSSLAEW 249 (249)
T ss_pred cCCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCChhhC
Confidence 469999999999999999999999999997 8999999999999999999643 33333 4689999998763
No 66
>PRK10444 UMP phosphatase; Provisional
Probab=99.73 E-value=9.8e-17 Score=114.61 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=61.7
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCH-HhHHHHHhcCCEEEEEcCCCCh-HHhhc--cccceeecCCCCh
Q 036267 61 RAKPFPDPYLKAIEILNVSKDHTFVFEDSV-SGIKAGVAADLHVVGLATRNPE-RLLLD--AKASFIIKDYEDP 130 (145)
Q Consensus 61 ~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~-~Di~~a~~~G~~~i~v~~g~~~-~~~~~--~~~~~~~~~l~e~ 130 (145)
.+||+|.++..+++++++++++|+||||++ +||.+|+++|+++++|.+|... +++.. .+|+++++++.++
T Consensus 172 ~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el 245 (248)
T PRK10444 172 VGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVADI 245 (248)
T ss_pred cCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHHHh
Confidence 369999999999999999999999999998 8999999999999999999543 44432 5799999999886
No 67
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.73 E-value=5.1e-17 Score=113.41 Aligned_cols=127 Identities=33% Similarity=0.459 Sum_probs=108.4
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcC-CcCccceeEe--cCcccCCCCChHHHHHHHHHcCCCC
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLG-LSGFFEAIII--GDECERAKPFPDPYLKAIEILNVSK 80 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~-l~~~f~~i~~--~~~~~~~kp~~~~~~~~~~~~~~~~ 80 (145)
....++||+.++++.|+..|++++++|+.++...+..+.+++ +...|+.++. ..+...+||+|+.|..+++.+|..+
T Consensus 89 ~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~ 168 (222)
T KOG2914|consen 89 MNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPP 168 (222)
T ss_pred cccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCC
Confidence 356789999999999999999999999999999999998887 7777876666 4456788999999999999999988
Q ss_pred -CcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChh
Q 036267 81 -DHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 81 -~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~ 131 (145)
++|++++|+...+++|+++||++|++.... ........+..+++++.++.
T Consensus 169 ~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~-~~~~~~~~~~~~~~~~~~~~ 219 (222)
T KOG2914|consen 169 PSKCLVFEDSPVGVQAAKAAGMQVVGVATPD-LSNLFSAGATLILESLEDFK 219 (222)
T ss_pred ccceEEECCCHHHHHHHHhcCCeEEEecCCC-cchhhhhccceecccccccC
Confidence 999999999999999999999999998742 22223345788888887754
No 68
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.72 E-value=2.3e-17 Score=97.29 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=61.8
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecC-HHhHHHHHhcCCEEEEEcCCCChH-Hhh--ccccceeecCCCCh
Q 036267 61 RAKPFPDPYLKAIEILNVSKDHTFVFEDS-VSGIKAGVAADLHVVGLATRNPER-LLL--DAKASFIIKDYEDP 130 (145)
Q Consensus 61 ~~kp~~~~~~~~~~~~~~~~~~~~~iGD~-~~Di~~a~~~G~~~i~v~~g~~~~-~~~--~~~~~~~~~~l~e~ 130 (145)
++||+|.+|..+++++++++++|+||||+ ..||.+|+++|+.+++|.+|.... ... ..+|++++++|.|+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKEA 75 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHhC
Confidence 58999999999999999999999999999 699999999999999999996443 222 36899999999874
No 69
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.72 E-value=2.6e-16 Score=106.40 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=100.3
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCCC---------------hHHHHHHHHHcCCcCccceeEecC-----cccCC
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNSP---------------RANAELMITKLGLSGFFEAIIIGD-----ECERA 62 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~---------------~~~~~~~l~~~~l~~~f~~i~~~~-----~~~~~ 62 (145)
.+++.+.||+.++|..|.+.|++++++||++ ...+...|+..|. .|+.++.+- .+.++
T Consensus 27 ~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv--~id~i~~Cph~p~~~c~cR 104 (181)
T COG0241 27 LDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGV--KIDGILYCPHHPEDNCDCR 104 (181)
T ss_pred HHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCC--ccceEEECCCCCCCCCccc
Confidence 3567899999999999999999999999975 2334455555554 577777764 25789
Q ss_pred CCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChh
Q 036267 63 KPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 63 kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~ 131 (145)
||++.+++.+++++++++++.++|||.+.|+++|.++|+..+.+.++.............+.+++.++.
T Consensus 105 KP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (181)
T COG0241 105 KPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIGVTTDGAGRAKWVFDSLAEFA 173 (181)
T ss_pred CCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcCcccccccccccccccccHHHHH
Confidence 999999999999999999999999999999999999999988888774333222223556677666654
No 70
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.70 E-value=9.5e-17 Score=112.77 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=94.8
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcC--cc--ceeEecCcccCCCCChHH----------H
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSG--FF--EAIIIGDECERAKPFPDP----------Y 69 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~--~f--~~i~~~~~~~~~kp~~~~----------~ 69 (145)
.+++++||+.++|+.++++|++++|+|++....++.+++.+ +.. .+ +..+.++.....||.|.. .
T Consensus 71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K 149 (219)
T PRK09552 71 ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCK 149 (219)
T ss_pred hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCch
Confidence 45789999999999999999999999999999999999987 643 22 344555566667777653 4
Q ss_pred HHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHH-hhccccceeecCCCChh
Q 036267 70 LKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERL-LLDAKASFIIKDYEDPK 131 (145)
Q Consensus 70 ~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~-~~~~~~~~~~~~l~e~~ 131 (145)
..++++++.++.+|+||||+.+|+++|+++|+.++ .+..... .....+...++++.|+.
T Consensus 150 ~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a---~~~l~~~~~~~~~~~~~~~~f~ei~ 209 (219)
T PRK09552 150 PSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFA---RDFLITKCEELGIPYTPFETFHDVQ 209 (219)
T ss_pred HHHHHHhccCCCCEEEEeCCHHHHHHHHHCCccee---HHHHHHHHHHcCCCccccCCHHHHH
Confidence 57888999999999999999999999999998333 2221111 12334666788888853
No 71
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.70 E-value=3.2e-16 Score=112.28 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=62.1
Q ss_pred cCCCCChHHHHHHHHHcCCCCCcEEEEecCH-HhHHHHHhcCCEEEEEcCCCC-hHHhh--ccccceeecCCCChh
Q 036267 60 ERAKPFPDPYLKAIEILNVSKDHTFVFEDSV-SGIKAGVAADLHVVGLATRNP-ERLLL--DAKASFIIKDYEDPK 131 (145)
Q Consensus 60 ~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~-~Di~~a~~~G~~~i~v~~g~~-~~~~~--~~~~~~~~~~l~e~~ 131 (145)
..+||++.+|+.+++.++.++++++||||++ +||.+|+++|+.+++|.+|.+ .++.. ...|+++++++.++.
T Consensus 187 ~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~~~~p~~v~~sl~~~~ 262 (269)
T COG0647 187 VIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRAEVKPTYVVDSLAELI 262 (269)
T ss_pred ccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhhccCCcchHhhHHHHH
Confidence 3479999999999999999999999999999 799999999999999999965 33333 246889999998864
No 72
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.70 E-value=4e-16 Score=110.38 Aligned_cols=100 Identities=12% Similarity=0.064 Sum_probs=83.6
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCC----hHHHHHHHHHcCC--cCccceeEecCcccCCCCChHHHHHHHHHcC
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSP----RANAELMITKLGL--SGFFEAIIIGDECERAKPFPDPYLKAIEILN 77 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~----~~~~~~~l~~~~l--~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~ 77 (145)
....++||++++|+.++++|++++++||.+ ...++.+++.+|+ .++|+.+++.++. .||.+.. .+++++
T Consensus 111 ~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~--~K~~K~~---~l~~~~ 185 (237)
T PRK11009 111 EFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKP--GQYTKTQ---WLKKKN 185 (237)
T ss_pred ccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCC--CCCCHHH---HHHhcC
Confidence 346789999999999999999999999954 5577777888999 8999988887753 5666643 445666
Q ss_pred CCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCCh
Q 036267 78 VSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPE 112 (145)
Q Consensus 78 ~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~ 112 (145)
+ ++||||+.+|+++|+++|+.+++|.||.++
T Consensus 186 i----~I~IGDs~~Di~aA~~AGi~~I~v~~G~~~ 216 (237)
T PRK11009 186 I----RIFYGDSDNDITAAREAGARGIRILRAANS 216 (237)
T ss_pred C----eEEEcCCHHHHHHHHHcCCcEEEEecCCCC
Confidence 5 999999999999999999999999999653
No 73
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.70 E-value=2.9e-16 Score=104.81 Aligned_cols=111 Identities=15% Similarity=0.171 Sum_probs=92.5
Q ss_pred HHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHH
Q 036267 15 VKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIK 94 (145)
Q Consensus 15 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~ 94 (145)
+|++|+++|++++|+||.+...+...++.+|+..+|+. .+|++..+..+++++++++++|+||||+.+|+.
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~---------~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~ 106 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQG---------QSNKLIAFSDILEKLALAPENVAYIGDDLIDWP 106 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEec---------ccchHHHHHHHHHHcCCCHHHEEEECCCHHHHH
Confidence 79999999999999999999999999999999877653 368899999999999999999999999999999
Q ss_pred HHHhcCCEEEEEcCCCChHHhhccccceeecCCCChh-HHHHhhh
Q 036267 95 AGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPK-LWAALEE 138 (145)
Q Consensus 95 ~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~-~~~~~~~ 138 (145)
+++++|+. +++..... .....+++++.+..+-. ++.+++.
T Consensus 107 ~~~~ag~~-~~v~~~~~---~~~~~a~~i~~~~~~~g~~~~~~~~ 147 (154)
T TIGR01670 107 VMEKVGLS-VAVADAHP---LLIPRADYVTRIAGGRGAVREVCEL 147 (154)
T ss_pred HHHHCCCe-EecCCcCH---HHHHhCCEEecCCCCCcHHHHHHHH
Confidence 99999997 67765542 23345888888876533 5555544
No 74
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.69 E-value=5.4e-16 Score=114.40 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=94.9
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccc-------eeEecC---cccCCCCChHHHHHHH
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFE-------AIIIGD---ECERAKPFPDPYLKAI 73 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~-------~i~~~~---~~~~~kp~~~~~~~~~ 73 (145)
..++++||++++|+.|++.|++++|+|++....++.+++.+|+...+. ..+++. +....+|+++.+..++
T Consensus 178 ~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la 257 (322)
T PRK11133 178 ENLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLA 257 (322)
T ss_pred HhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHH
Confidence 357899999999999999999999999999988999999999866442 122111 2335689999999999
Q ss_pred HHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecC
Q 036267 74 EILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKD 126 (145)
Q Consensus 74 ~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~ 126 (145)
+++|+++++|++|||+.||+.+++.+|+.+++ +.++. .+..+++++++
T Consensus 258 ~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~----nAkp~-Vk~~Ad~~i~~ 305 (322)
T PRK11133 258 QEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY----HAKPK-VNEQAQVTIRH 305 (322)
T ss_pred HHcCCChhhEEEEECCHHHHHHHHHCCCeEEe----CCCHH-HHhhCCEEecC
Confidence 99999999999999999999999999976654 22333 33468888873
No 75
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.68 E-value=1.5e-16 Score=103.04 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=79.7
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCC-ChHHHHHHHHHcC-------CcCccceeEecCcccCCCCChHHHHHHHHHcC-
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNS-PRANAELMITKLG-------LSGFFEAIIIGDECERAKPFPDPYLKAIEILN- 77 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~-~~~~~~~~l~~~~-------l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~- 77 (145)
+++||+.++|+.|+++|++++++||+ ....+...++..+ +.++|+.++++++ +|+|..|..+++++|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~----~pkp~~~~~a~~~lg~ 104 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYW----LPKSPRLVEIALKLNG 104 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCC----CcHHHHHHHHHHHhcC
Confidence 47999999999999999999999999 8888889999888 8899998887653 488999999999999
Q ss_pred -CCCCcEEEEecCHHhHHHHHh
Q 036267 78 -VSKDHTFVFEDSVSGIKAGVA 98 (145)
Q Consensus 78 -~~~~~~~~iGD~~~Di~~a~~ 98 (145)
++|++|+||||+..++...++
T Consensus 105 ~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 105 VLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred CCCcceEEEECCCHhHHHHHHh
Confidence 999999999999999887764
No 76
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.67 E-value=6.9e-16 Score=107.11 Aligned_cols=123 Identities=18% Similarity=0.241 Sum_probs=91.2
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCc----ccCCCCChHHHHHHHHHcCCC
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDE----CERAKPFPDPYLKAIEILNVS 79 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~----~~~~kp~~~~~~~~~~~~~~~ 79 (145)
..++++||+.++|+.|+++ ++++|+|++....++..++.+|+..+|...+...+ .+..++.|.....++++++..
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~ 143 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSL 143 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHh
Confidence 4678899999999999999 99999999999999999999999988865433321 112233344556666777777
Q ss_pred CCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccce-eecCCCChh
Q 036267 80 KDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASF-IIKDYEDPK 131 (145)
Q Consensus 80 ~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~-~~~~l~e~~ 131 (145)
+++|+||||+.+|+++++++|+... + +..... ....+.+ +++++.++.
T Consensus 144 ~~~~v~iGDs~~D~~~~~aa~~~v~-~--~~~~~~-~~~~~~~~~~~~~~el~ 192 (205)
T PRK13582 144 GYRVIAAGDSYNDTTMLGEADAGIL-F--RPPANV-IAEFPQFPAVHTYDELL 192 (205)
T ss_pred CCeEEEEeCCHHHHHHHHhCCCCEE-E--CCCHHH-HHhCCcccccCCHHHHH
Confidence 8999999999999999999997443 2 322222 2223454 899998863
No 77
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.65 E-value=2.1e-15 Score=101.83 Aligned_cols=102 Identities=18% Similarity=0.253 Sum_probs=85.0
Q ss_pred HHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHH
Q 036267 15 VKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIK 94 (145)
Q Consensus 15 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~ 94 (145)
.+..|+++|++++|+||.+...++..++.+|+..+|+.+ ||+|..+..+++++++++++|++|||+.+|+.
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~~---------kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~ 112 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEGI---------KKKTEPYAQMLEEMNISDAEVCYVGDDLVDLS 112 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEecC---------CCCHHHHHHHHHHcCcCHHHEEEECCCHHHHH
Confidence 578899999999999999999999999999999888642 78899999999999999999999999999999
Q ss_pred HHHhcCCEEEEEcCCCChHHhhccccceeecCCCC
Q 036267 95 AGVAADLHVVGLATRNPERLLLDAKASFIIKDYED 129 (145)
Q Consensus 95 ~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e 129 (145)
+++.+|+. ++......... ..++++..+-.+
T Consensus 113 ~~~~ag~~---~am~nA~~~lk-~~A~~I~~~~~~ 143 (169)
T TIGR02726 113 MMKRVGLA---VAVGDAVADVK-EAAAYVTTARGG 143 (169)
T ss_pred HHHHCCCe---EECcCchHHHH-HhCCEEcCCCCC
Confidence 99999954 44443444444 347777654444
No 78
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.63 E-value=1.8e-15 Score=99.74 Aligned_cols=93 Identities=19% Similarity=0.320 Sum_probs=84.5
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEE
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVF 86 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 86 (145)
..-|.+++.++.++++|++++|+||+.+..+....+.+|+. .++ .-.||.+..+.++++++++++++|+||
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~----fi~-----~A~KP~~~~fr~Al~~m~l~~~~vvmV 116 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP----FIY-----RAKKPFGRAFRRALKEMNLPPEEVVMV 116 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc----eee-----cccCccHHHHHHHHHHcCCChhHEEEE
Confidence 45678999999999999999999999999999999998864 332 468999999999999999999999999
Q ss_pred ecCH-HhHHHHHhcCCEEEEEcC
Q 036267 87 EDSV-SGIKAGVAADLHVVGLAT 108 (145)
Q Consensus 87 GD~~-~Di~~a~~~G~~~i~v~~ 108 (145)
||.+ .|+.+++++|+.+|.|.+
T Consensus 117 GDqL~TDVlggnr~G~~tIlV~P 139 (175)
T COG2179 117 GDQLFTDVLGGNRAGMRTILVEP 139 (175)
T ss_pred cchhhhhhhcccccCcEEEEEEE
Confidence 9999 799999999999999964
No 79
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.62 E-value=3.2e-15 Score=104.69 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=91.5
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc---ceeEecCcccCCCCChHHH----------HH
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF---EAIIIGDECERAKPFPDPY----------LK 71 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f---~~i~~~~~~~~~kp~~~~~----------~~ 71 (145)
.++++||+.++|+.++++|++++|+|++....++.+++.++...++ +.++..+.....+|+|..+ ..
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 5789999999999999999999999999999999999987544444 3455555556677876654 47
Q ss_pred HHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhh-ccccceeecCCCCh
Q 036267 72 AIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLL-DAKASFIIKDYEDP 130 (145)
Q Consensus 72 ~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~-~~~~~~~~~~l~e~ 130 (145)
++++++..+++++||||+.+|+.+|+.+|+ .+..+....... ...+...++++.++
T Consensus 148 ~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~---~~ar~~l~~~~~~~~~~~~~~~~f~di 204 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDSVTDVEAAKQSDL---CFARDYLLNECEELGLNHAPFQDFYDV 204 (214)
T ss_pred HHHHHhhcCCcEEEEeCCHHHHHHHHhCCe---eEehHHHHHHHHHcCCCccCcCCHHHH
Confidence 777777788999999999999999999996 333332222112 22244556666664
No 80
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.62 E-value=4.8e-15 Score=101.30 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=80.2
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCc--------------------ccCCCC
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDE--------------------CERAKP 64 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~--------------------~~~~kp 64 (145)
.++++||+.++|+.|+++|++++|+||+....++..++.+++..+|+.+++++. ...+.+
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 149 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCC 149 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCC
Confidence 368999999999999999999999999999999999999999999999887643 122334
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCE
Q 036267 65 FPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLH 102 (145)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~ 102 (145)
++..+.++.+.+ +++++||||+.+|+++|+++++-
T Consensus 150 K~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~ 184 (188)
T TIGR01489 150 KGKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVV 184 (188)
T ss_pred HHHHHHHHHhhc---CceEEEECCCcchhchHhcCCcc
Confidence 566777776654 79999999999999999998754
No 81
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.62 E-value=2.3e-15 Score=104.67 Aligned_cols=91 Identities=23% Similarity=0.295 Sum_probs=79.7
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
..+++|++.++|+.|+++|++++++|+.....+..+.+.+|+.+ .++.++.. +||.+.++..++++++.++++|+
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~---~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v~ 199 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD---SIVFARVI--GKPEPKIFLRIIKELQVKPGEVA 199 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS---EEEEESHE--TTTHHHHHHHHHHHHTCTGGGEE
T ss_pred cCcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc---cccccccc--ccccchhHHHHHHHHhcCCCEEE
Confidence 34689999999999999999999999999999999999999943 22222211 79999999999999999999999
Q ss_pred EEecCHHhHHHHHhcC
Q 036267 85 VFEDSVSGIKAGVAAD 100 (145)
Q Consensus 85 ~iGD~~~Di~~a~~~G 100 (145)
||||+.||+.+++++|
T Consensus 200 ~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 200 MVGDGVNDAPALKAAG 215 (215)
T ss_dssp EEESSGGHHHHHHHSS
T ss_pred EEccCHHHHHHHHhCc
Confidence 9999999999999987
No 82
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.60 E-value=7.3e-15 Score=100.73 Aligned_cols=104 Identities=24% Similarity=0.323 Sum_probs=95.1
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc------cCCCCChHHHHHHHHHcCC
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC------ERAKPFPDPYLKAIEILNV 78 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~------~~~kp~~~~~~~~~~~~~~ 78 (145)
.++|-+-++++|-.|+.++ .++.||+.+..+.+.|.++|+++.|+.+++.+.. -..||.+.+|+.+.+..|+
T Consensus 98 ~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi 175 (244)
T KOG3109|consen 98 DLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGI 175 (244)
T ss_pred hcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCC
Confidence 3778888999999999875 8899999999999999999999999999988754 3689999999999999999
Q ss_pred C-CCcEEEEecCHHhHHHHHhcCCEEEEEcCCC
Q 036267 79 S-KDHTFVFEDSVSGIKAGVAADLHVVGLATRN 110 (145)
Q Consensus 79 ~-~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~ 110 (145)
. |.+++||.||.+.|++|++.|++++.+....
T Consensus 176 ~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 176 DSPRNTYFFDDSERNIQTAKEVGLKTVLVGREH 208 (244)
T ss_pred CCcCceEEEcCchhhHHHHHhccceeEEEEeee
Confidence 6 9999999999999999999999999998663
No 83
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.60 E-value=7.6e-16 Score=109.76 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=84.9
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcccee--EecCcccCCCCChHHHHHHHHHcCCC-CCcEEE
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAI--IIGDECERAKPFPDPYLKAIEILNVS-KDHTFV 85 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i--~~~~~~~~~kp~~~~~~~~~~~~~~~-~~~~~~ 85 (145)
|+++.++++.+.++|+++ |+||.........+...+...+|..+ .+.+....+||+|.+|+.++++++.. +++|+|
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~ 218 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLM 218 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 789999999999899997 88999887777677777777777654 55555568999999999999999874 679999
Q ss_pred EecCH-HhHHHHHhcCCEEEEEcC
Q 036267 86 FEDSV-SGIKAGVAADLHVVGLAT 108 (145)
Q Consensus 86 iGD~~-~Di~~a~~~G~~~i~v~~ 108 (145)
|||++ +||.+|+++|+.+++|.+
T Consensus 219 vGD~~~~Di~~a~~~G~~~i~v~t 242 (242)
T TIGR01459 219 VGDSFYTDILGANRLGIDTALVLT 242 (242)
T ss_pred ECCCcHHHHHHHHHCCCeEEEEeC
Confidence 99995 999999999999999864
No 84
>PLN02645 phosphoglycolate phosphatase
Probab=99.60 E-value=7.1e-16 Score=113.61 Aligned_cols=119 Identities=15% Similarity=0.053 Sum_probs=90.2
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHH-HHHHHHHcCCcCccceeEecCccc---CCCCChHHHHHHHHHcCCCCCcEEEEec
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRAN-AELMITKLGLSGFFEAIIIGDECE---RAKPFPDPYLKAIEILNVSKDHTFVFED 88 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~---~~kp~~~~~~~~~~~~~~~~~~~~~iGD 88 (145)
..+...|+.++-..+|+||.+... ....+...|...+|+.+.+..... .+||+|.+|..+++++++++++++||||
T Consensus 176 ~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD 255 (311)
T PLN02645 176 QYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGD 255 (311)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcC
Confidence 334555554334688899887643 233345567777787776655432 3699999999999999999999999999
Q ss_pred CH-HhHHHHHhcCCEEEEEcCCCC-hHHhhc----cccceeecCCCChh
Q 036267 89 SV-SGIKAGVAADLHVVGLATRNP-ERLLLD----AKASFIIKDYEDPK 131 (145)
Q Consensus 89 ~~-~Di~~a~~~G~~~i~v~~g~~-~~~~~~----~~~~~~~~~l~e~~ 131 (145)
++ +||.+|+++|+++++|.+|.. .+++.. ..|+++++++.++.
T Consensus 256 ~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l~ 304 (311)
T PLN02645 256 RLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDFL 304 (311)
T ss_pred CcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHHH
Confidence 98 899999999999999999954 333332 46899999998853
No 85
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.59 E-value=1.2e-14 Score=99.49 Aligned_cols=99 Identities=16% Similarity=0.210 Sum_probs=83.1
Q ss_pred HHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhH
Q 036267 14 NVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGI 93 (145)
Q Consensus 14 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di 93 (145)
..++.|+++|++++|+||.+...++..++.+|+..+|+. .++++..+..+++++|+++++|+||||+.+|+
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g---------~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~ 125 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQG---------QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDW 125 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeecC---------CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHH
Confidence 478889999999999999999999999999998877651 34568999999999999999999999999999
Q ss_pred HHHHhcCCEEEEEcCCCChHHhhccccceeec
Q 036267 94 KAGVAADLHVVGLATRNPERLLLDAKASFIIK 125 (145)
Q Consensus 94 ~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~ 125 (145)
.+++++|+.++ +. +........++++++
T Consensus 126 ~~a~~aG~~~~-v~---~~~~~~~~~a~~v~~ 153 (183)
T PRK09484 126 PVMEKVGLSVA-VA---DAHPLLLPRADYVTR 153 (183)
T ss_pred HHHHHCCCeEe-cC---ChhHHHHHhCCEEec
Confidence 99999999843 43 233334445788886
No 86
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.55 E-value=1e-13 Score=99.81 Aligned_cols=113 Identities=13% Similarity=0.154 Sum_probs=91.5
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcccee------EecCcccCCCCCh---------HH
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAI------IIGDECERAKPFP---------DP 68 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i------~~~~~~~~~kp~~---------~~ 68 (145)
..+++.||+.+|++.|+++|++++|+|++....++..++.+|+...+..+ +..++...++|.| ..
T Consensus 118 ~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v 197 (277)
T TIGR01544 118 SDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDV 197 (277)
T ss_pred cCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHH
Confidence 57899999999999999999999999999999999999999988777777 4444555567777 56
Q ss_pred HHHHHHHcC--CCCCcEEEEecCHHhHHHHHhc-C---CEEEEEcCCCChHHhh
Q 036267 69 YLKAIEILN--VSKDHTFVFEDSVSGIKAGVAA-D---LHVVGLATRNPERLLL 116 (145)
Q Consensus 69 ~~~~~~~~~--~~~~~~~~iGD~~~Di~~a~~~-G---~~~i~v~~g~~~~~~~ 116 (145)
++...+.++ .++++|++|||+.+|+.+|.-. . +-.|+....+..+.+.
T Consensus 198 ~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~igfln~~~e~~l~ 251 (277)
T TIGR01544 198 ALRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLE 251 (277)
T ss_pred HHHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEEecccCHHHHHH
Confidence 667888888 7999999999999999998766 2 2356666665444444
No 87
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.55 E-value=3.4e-14 Score=105.12 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=84.2
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHH----cCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCc
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITK----LGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDH 82 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~----~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 82 (145)
.+|+|+.++|+.|+++|++++|+|++....+...++. +++.++|+.+..+ .||+|..+..+++++|+.+++
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~-----~~pk~~~i~~~~~~l~i~~~~ 105 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSIN-----WGPKSESLRKIAKKLNLGTDS 105 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEe-----cCchHHHHHHHHHHhCCCcCc
Confidence 4689999999999999999999999999999999999 8999999887553 589999999999999999999
Q ss_pred EEEEecCHHhHHHHHhcCCE
Q 036267 83 TFVFEDSVSGIKAGVAADLH 102 (145)
Q Consensus 83 ~~~iGD~~~Di~~a~~~G~~ 102 (145)
++||||+..|+..+++++..
T Consensus 106 ~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 106 FLFIDDNPAERANVKITLPV 125 (320)
T ss_pred EEEECCCHHHHHHHHHHCCC
Confidence 99999999999999997754
No 88
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.54 E-value=1.7e-13 Score=95.29 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=87.6
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccce--eE------ecCcccCCCCChHHHHHHHHHc
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEA--II------IGDECERAKPFPDPYLKAIEIL 76 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~--i~------~~~~~~~~kp~~~~~~~~~~~~ 76 (145)
.++++||+.++|+.+++.+ +++|+|++....++.+++.+|++.+|.. .+ ++... ..++.+..+...+++.
T Consensus 66 ~i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~-~~~~~K~~~l~~l~~~ 143 (203)
T TIGR02137 66 TLKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQL-RQKDPKRQSVIAFKSL 143 (203)
T ss_pred hCCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeee-cCcchHHHHHHHHHhh
Confidence 4689999999999999974 9999999999999999999999988852 22 22211 3455555555555555
Q ss_pred CCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccc-eeecCCCChh
Q 036267 77 NVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKAS-FIIKDYEDPK 131 (145)
Q Consensus 77 ~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~-~~~~~l~e~~ 131 (145)
+ .+|++|||+.||+.+++.+|...+... ++......++ .++.+++|+.
T Consensus 144 ~---~~~v~vGDs~nDl~ml~~Ag~~ia~~a----k~~~~~~~~~~~~~~~~~~~~ 192 (203)
T TIGR02137 144 Y---YRVIAAGDSYNDTTMLSEAHAGILFHA----PENVIREFPQFPAVHTYEDLK 192 (203)
T ss_pred C---CCEEEEeCCHHHHHHHHhCCCCEEecC----CHHHHHhCCCCCcccCHHHHH
Confidence 5 379999999999999999998877764 2222323333 4788888853
No 89
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.54 E-value=4e-14 Score=110.00 Aligned_cols=95 Identities=24% Similarity=0.279 Sum_probs=82.6
Q ss_pred cCc-ccCCHHHHHHHHHhCCCcEEEEeCCCh------------HHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHH
Q 036267 5 QLK-ALNGLDNVKKWVEGCGLKRAAVTNSPR------------ANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLK 71 (145)
Q Consensus 5 ~~~-~~~g~~~~l~~l~~~g~~~~i~s~~~~------------~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~ 71 (145)
.++ ++||+.+.|+.|+++|++++|+||++. ..+..+++.+|+. |+.+++.+....+||.|.++..
T Consensus 194 d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip--fdviia~~~~~~RKP~pGm~~~ 271 (526)
T TIGR01663 194 DWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP--FQVFIAIGAGFYRKPLTGMWDH 271 (526)
T ss_pred HeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc--eEEEEeCCCCCCCCCCHHHHHH
Confidence 344 699999999999999999999999876 4577888888875 8888888877889999999999
Q ss_pred HHHHcC----CCCCcEEEEecCHHhHHHHHhcCC
Q 036267 72 AIEILN----VSKDHTFVFEDSVSGIKAGVAADL 101 (145)
Q Consensus 72 ~~~~~~----~~~~~~~~iGD~~~Di~~a~~~G~ 101 (145)
++++++ +++++++||||+..|+++++++|.
T Consensus 272 a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 272 LKEEANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred HHHhcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 999985 899999999999988877776664
No 90
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.50 E-value=3.1e-13 Score=100.03 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=87.0
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHc-C-------CcCccceeEecCccc----------------
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKL-G-------LSGFFEAIIIGDECE---------------- 60 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~-~-------l~~~f~~i~~~~~~~---------------- 60 (145)
-+.+.||+.++|++|+++|++++|+||++...++..++.+ | |.++||.|++....+
T Consensus 182 yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~ 261 (343)
T TIGR02244 182 YVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVET 261 (343)
T ss_pred HhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCC
Confidence 4667999999999999999999999999999999999996 7 999999988874311
Q ss_pred -CCCCC------------hHHHHHHHHHcCCCCCcEEEEecCH-HhHHHHH-hcCCEEEEEcC
Q 036267 61 -RAKPF------------PDPYLKAIEILNVSKDHTFVFEDSV-SGIKAGV-AADLHVVGLAT 108 (145)
Q Consensus 61 -~~kp~------------~~~~~~~~~~~~~~~~~~~~iGD~~-~Di~~a~-~~G~~~i~v~~ 108 (145)
..++. ......+.+.+++.+++++||||++ .||..++ .+||.+++|..
T Consensus 262 g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 262 GSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred CcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence 00111 1235678888899999999999999 7999998 89999999965
No 91
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.50 E-value=2.2e-13 Score=106.96 Aligned_cols=114 Identities=19% Similarity=0.221 Sum_probs=91.3
Q ss_pred cCcccCCHHHHHHHHHhCCC-cEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 5 QLKALNGLDNVKKWVEGCGL-KRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
+.+++||+.++|++|+++|+ +++++||.+...++.+++.+|++.+|..+. |+....++++++.+.+++
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~~-----------p~~K~~~i~~l~~~~~~v 428 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAELL-----------PEDKLEIVKELREKYGPV 428 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhccC-----------cHHHHHHHHHHHhcCCEE
Confidence 45789999999999999999 999999999999999999999988875442 122244666666667899
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceee--cCCCChhH
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFII--KDYEDPKL 132 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~--~~l~e~~~ 132 (145)
+||||+.+|+.+++++| +++++|....+.....++.++ +++.++..
T Consensus 429 ~~vGDg~nD~~al~~A~---vgia~g~~~~~~~~~~ad~vl~~~~l~~l~~ 476 (536)
T TIGR01512 429 AMVGDGINDAPALAAAD---VGIAMGASGSDVAIETADVVLLNDDLSRLPQ 476 (536)
T ss_pred EEEeCCHHHHHHHHhCC---EEEEeCCCccHHHHHhCCEEEECCCHHHHHH
Confidence 99999999999999999 688888433333444688888 78888643
No 92
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.49 E-value=2.8e-13 Score=91.84 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=78.4
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCc------------ccCCCCChHHHHH
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDE------------CERAKPFPDPYLK 71 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~------------~~~~kp~~~~~~~ 71 (145)
..++++||+.++++.++++|++++|+|++....++.+++.+|+..+|...+..++ ...+..+...+..
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~ 149 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKE 149 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHH
Confidence 4567899999999999999999999999999999999999999877754433321 1122334567888
Q ss_pred HHHHcCCCCCcEEEEecCHHhHHHHHhc
Q 036267 72 AIEILNVSKDHTFVFEDSVSGIKAGVAA 99 (145)
Q Consensus 72 ~~~~~~~~~~~~~~iGD~~~Di~~a~~~ 99 (145)
+++.+++++++|++|||+.+|+.+++.+
T Consensus 150 ~~~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 150 LLEESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 8888899999999999999999998753
No 93
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.48 E-value=5.3e-13 Score=95.70 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=57.7
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCH-HhHHHHHhcCCEEEEEcCCCCh-HHhhcc------ccceeecCCCCh
Q 036267 61 RAKPFPDPYLKAIEILNVSKDHTFVFEDSV-SGIKAGVAADLHVVGLATRNPE-RLLLDA------KASFIIKDYEDP 130 (145)
Q Consensus 61 ~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~-~Di~~a~~~G~~~i~v~~g~~~-~~~~~~------~~~~~~~~l~e~ 130 (145)
.+||.+.++..+.++++++|++|+||||++ .||..++++|++++++.+|.+. ++.+.. .|+|.++++.++
T Consensus 222 ~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~d~ 299 (306)
T KOG2882|consen 222 LGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLGDL 299 (306)
T ss_pred cCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHHHH
Confidence 468999999999999999999999999999 6999999999999999999543 333322 366666666653
No 94
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.47 E-value=5e-13 Score=105.42 Aligned_cols=111 Identities=19% Similarity=0.235 Sum_probs=87.3
Q ss_pred cCcccCCHHHHHHHHHhCC-CcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 5 QLKALNGLDNVKKWVEGCG-LKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g-~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
+.+++||+.++|+.|+++| ++++++||.....++.+++.+|+.++|..+. |+....++++++..+.+|
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~~-----------p~~K~~~v~~l~~~~~~v 450 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAELL-----------PEDKLAIVKELQEEGGVV 450 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccCC-----------HHHHHHHHHHHHHcCCEE
Confidence 4578999999999999999 9999999999999999999999988776541 122234555555567799
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeec--CCCCh
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIK--DYEDP 130 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~--~l~e~ 130 (145)
+||||+.+|+.+++++| +++++|. ..+.....+++++. ++..+
T Consensus 451 ~~vGDg~nD~~al~~A~---vgia~g~-~~~~~~~~Ad~vi~~~~~~~l 495 (556)
T TIGR01525 451 AMVGDGINDAPALAAAD---VGIAMGA-GSDVAIEAADIVLLNDDLSSL 495 (556)
T ss_pred EEEECChhHHHHHhhCC---EeEEeCC-CCHHHHHhCCEEEeCCCHHHH
Confidence 99999999999999999 7888774 33334446888887 45553
No 95
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.45 E-value=9.5e-14 Score=93.37 Aligned_cols=104 Identities=11% Similarity=0.131 Sum_probs=88.8
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcC-ccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSG-FFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
+..+||+.+||++|.+. +.++|.|++++.+++.+++.++... +|+.++++++....+|. +.+.+..+|.++++|+
T Consensus 41 v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~vI 116 (162)
T TIGR02251 41 VFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKVI 116 (162)
T ss_pred EEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhhEE
Confidence 56899999999999987 9999999999999999999999775 88999998887655655 6677788899999999
Q ss_pred EEecCHHhHHHHHhcCCEEEEEcCCCChH
Q 036267 85 VFEDSVSGIKAGVAADLHVVGLATRNPER 113 (145)
Q Consensus 85 ~iGD~~~Di~~a~~~G~~~i~v~~g~~~~ 113 (145)
+|||+..++.++.++|+.+..........
T Consensus 117 iVDD~~~~~~~~~~NgI~i~~f~~~~~D~ 145 (162)
T TIGR02251 117 IIDNSPYSYSLQPDNAIPIKSWFGDPNDT 145 (162)
T ss_pred EEeCChhhhccCccCEeecCCCCCCCCHH
Confidence 99999999999999998766665333333
No 96
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.45 E-value=5.7e-13 Score=92.26 Aligned_cols=101 Identities=11% Similarity=0.083 Sum_probs=83.2
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccce-eEe-cCc---------ccCCCCChHHHHHHHH
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEA-III-GDE---------CERAKPFPDPYLKAIE 74 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~-i~~-~~~---------~~~~kp~~~~~~~~~~ 74 (145)
..++||+.++|+.++++|++++|+|++....++.+++.+|++.+|.. +.. .+. ...++++...+...++
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~ 165 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA 165 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999888754 222 111 1224556677888889
Q ss_pred HcCCCCCcEEEEecCHHhHHHHHhcCCEEEEE
Q 036267 75 ILNVSKDHTFVFEDSVSGIKAGVAADLHVVGL 106 (145)
Q Consensus 75 ~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v 106 (145)
+.++++++|+++|||.+|+++++.+|..++..
T Consensus 166 ~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 166 EEQIDLKDSYAYGDSISDLPLLSLVGHPYVVN 197 (202)
T ss_pred HcCCCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence 99999999999999999999999999776443
No 97
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.44 E-value=5.9e-13 Score=90.91 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=60.7
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHH-hHHHHHhcCCEEEEEcCC-CChHHhh--ccccceeecCCCChhHHH
Q 036267 61 RAKPFPDPYLKAIEILNVSKDHTFVFEDSVS-GIKAGVAADLHVVGLATR-NPERLLL--DAKASFIIKDYEDPKLWA 134 (145)
Q Consensus 61 ~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~-Di~~a~~~G~~~i~v~~g-~~~~~~~--~~~~~~~~~~l~e~~~~~ 134 (145)
.+||.|..|+.+++.+|++|++++||||..+ |+-.|+++||..+.|.+| +.+.+.. ...|+.++++|.+.-.++
T Consensus 179 vGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~AVd~I 256 (262)
T KOG3040|consen 179 VGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADNFADAVDLI 256 (262)
T ss_pred ecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhhHHHHHHHH
Confidence 4799999999999999999999999999995 999999999999999999 3442222 335677888888754443
No 98
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.41 E-value=2.3e-12 Score=86.25 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=98.4
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHc---CCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCC
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKL---GLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKD 81 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~---~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 81 (145)
..++||++.++|++.++.|++++|.|+++...++.++... +|..+|+..|-. ....|-....|.+++...|++|.
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDt--tiG~KrE~~SY~kIa~~iGl~p~ 178 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDT--TIGKKRESQSYAKIAGDIGLPPA 178 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeec--cccccccchhHHHHHHhcCCCch
Confidence 4579999999999999999999999999988888877643 577778777643 34577788999999999999999
Q ss_pred cEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCC
Q 036267 82 HTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYE 128 (145)
Q Consensus 82 ~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~ 128 (145)
+++|+-|....+.+|+.+|+.++.+.+.++.+... .....++.+++
T Consensus 179 eilFLSDn~~EL~AA~~vGl~t~l~~R~g~~P~~d-~~~~~~~~sf~ 224 (229)
T COG4229 179 EILFLSDNPEELKAAAGVGLATGLAVRPGNAPVPD-GQGFLVYKSFE 224 (229)
T ss_pred heEEecCCHHHHHHHHhcchheeeeecCCCCCCCC-CcCceeeechh
Confidence 99999999999999999999999998764332211 22345666665
No 99
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.39 E-value=2.9e-12 Score=85.83 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=73.4
Q ss_pred cccCccc-CCHHHHHHHHHhCCCcEEEEeCCC---h-----------HHHHHHHHHcCCcCccceeEecCcccCCCCChH
Q 036267 3 SEQLKAL-NGLDNVKKWVEGCGLKRAAVTNSP---R-----------ANAELMITKLGLSGFFEAIIIGDECERAKPFPD 67 (145)
Q Consensus 3 ~~~~~~~-~g~~~~l~~l~~~g~~~~i~s~~~---~-----------~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~ 67 (145)
+..++++ |++.+.|++|.+.|+.++|+||+. . ..+..+++.+++. +...++.....++||.+.
T Consensus 24 ~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip--~~~~~a~~~d~~RKP~~G 101 (159)
T PF08645_consen 24 PDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP--IQVYAAPHKDPCRKPNPG 101 (159)
T ss_dssp TCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS---EEEEECGCSSTTSTTSSH
T ss_pred HHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc--eEEEecCCCCCCCCCchh
Confidence 3456665 589999999999999999999983 1 4445566666655 333444444479999999
Q ss_pred HHHHHHHHcCC----CCCcEEEEecC-----------HHhHHHHHhcCCEEE
Q 036267 68 PYLKAIEILNV----SKDHTFVFEDS-----------VSGIKAGVAADLHVV 104 (145)
Q Consensus 68 ~~~~~~~~~~~----~~~~~~~iGD~-----------~~Di~~a~~~G~~~i 104 (145)
|+..++++++. +.++++||||. ..|.+.|.++|+++.
T Consensus 102 M~~~~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f~ 153 (159)
T PF08645_consen 102 MWEFALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKFY 153 (159)
T ss_dssp HHHHHCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--EE
T ss_pred HHHHHHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCccc
Confidence 99999999874 99999999996 689999999998753
No 100
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.38 E-value=1.4e-11 Score=82.92 Aligned_cols=109 Identities=11% Similarity=0.131 Sum_probs=78.0
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEe-CCChHHHHHHHHHcCCc----------CccceeEecCcccCCCCChHHHHH
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVT-NSPRANAELMITKLGLS----------GFFEAIIIGDECERAKPFPDPYLK 71 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s-~~~~~~~~~~l~~~~l~----------~~f~~i~~~~~~~~~kp~~~~~~~ 71 (145)
...+++||++.+.|+.|+++|++++++| +...+.++..|+.+++. ++|+..-.. +-.+...+..
T Consensus 41 g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~-----~gsK~~Hf~~ 115 (169)
T PF12689_consen 41 GEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIY-----PGSKTTHFRR 115 (169)
T ss_dssp --EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEES-----SS-HHHHHHH
T ss_pred CCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhhee-----cCchHHHHHH
Confidence 4578899999999999999999999999 45678999999999999 778764322 2256789999
Q ss_pred HHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhh
Q 036267 72 AIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLL 116 (145)
Q Consensus 72 ~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~ 116 (145)
+.++.|++.++++|+.|....++...+.|+.+++|..|-+.+...
T Consensus 116 i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~ 160 (169)
T PF12689_consen 116 IHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFE 160 (169)
T ss_dssp HHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHH
T ss_pred HHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHHHH
Confidence 999999999999999999999999999999999999886655443
No 101
>PRK08238 hypothetical protein; Validated
Probab=99.34 E-value=2.7e-11 Score=93.79 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=84.5
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCc
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDH 82 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 82 (145)
....+.+||+.++|++++++|++++++|+.++..++.+++.+|+ |+.++++++....||++.. ..+.+.++ .++
T Consensus 68 ~~~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl---Fd~Vigsd~~~~~kg~~K~-~~l~~~l~--~~~ 141 (479)
T PRK08238 68 VATLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL---FDGVFASDGTTNLKGAAKA-AALVEAFG--ERG 141 (479)
T ss_pred hhhCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC---CCEEEeCCCccccCCchHH-HHHHHHhC--ccC
Confidence 44567889999999999999999999999999999999999987 8999999987777776543 33445555 366
Q ss_pred EEEEecCHHhHHHHHhcCCEEEEEcCCC
Q 036267 83 TFVFEDSVSGIKAGVAADLHVVGLATRN 110 (145)
Q Consensus 83 ~~~iGD~~~Di~~a~~~G~~~i~v~~g~ 110 (145)
++|+||+.+|+.+++.+| ..+.|..+.
T Consensus 142 ~~yvGDS~~Dlp~~~~A~-~av~Vn~~~ 168 (479)
T PRK08238 142 FDYAGNSAADLPVWAAAR-RAIVVGASP 168 (479)
T ss_pred eeEecCCHHHHHHHHhCC-CeEEECCCH
Confidence 899999999999999999 777786653
No 102
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=99.34 E-value=8.4e-12 Score=98.59 Aligned_cols=111 Identities=17% Similarity=0.174 Sum_probs=83.6
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
..+++||+.++|++|+++|++++++|+.....++.+++.+|++ +|..+ .++++ ...++++..++++|+
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~-~~~~~-------~p~~K----~~~v~~l~~~~~~v~ 470 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN-VRAEV-------LPDDK----AALIKELQEKGRVVA 470 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc-EEccC-------ChHHH----HHHHHHHHHcCCEEE
Confidence 3468999999999999999999999999999999999999995 22211 11222 344444444678999
Q ss_pred EEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceee--cCCCChh
Q 036267 85 VFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFII--KDYEDPK 131 (145)
Q Consensus 85 ~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~--~~l~e~~ 131 (145)
||||+.||+.+++++| +++.+|... +.....+++++ +++.++.
T Consensus 471 ~VGDg~nD~~al~~A~---vgia~g~g~-~~a~~~Advvl~~~~l~~l~ 515 (562)
T TIGR01511 471 MVGDGINDAPALAQAD---VGIAIGAGT-DVAIEAADVVLMRNDLNDVA 515 (562)
T ss_pred EEeCCCccHHHHhhCC---EEEEeCCcC-HHHHhhCCEEEeCCCHHHHH
Confidence 9999999999999999 567776432 33444588877 4666654
No 103
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.33 E-value=1e-11 Score=102.49 Aligned_cols=123 Identities=18% Similarity=0.229 Sum_probs=99.2
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCccc----------------CCCCChHHH
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECE----------------RAKPFPDPY 69 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~----------------~~kp~~~~~ 69 (145)
-+++||+.++++.|+++|+++.++|+.....+..+.+.+|+..+++.++++.+.. .....|+..
T Consensus 527 Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K 606 (884)
T TIGR01522 527 DPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHK 606 (884)
T ss_pred CcchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHH
Confidence 3789999999999999999999999999999999999999987776655554331 233567777
Q ss_pred HHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceee--cCCCChh
Q 036267 70 LKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFII--KDYEDPK 131 (145)
Q Consensus 70 ~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~--~~l~e~~ 131 (145)
..+++.+....+.+.|+||+.||+.+.++++ +++++|....+..+..++.++ +++..+.
T Consensus 607 ~~iv~~lq~~g~~v~mvGDGvND~pAl~~Ad---VGia~g~~g~~va~~aaDivl~dd~~~~i~ 667 (884)
T TIGR01522 607 MKIVKALQKRGDVVAMTGDGVNDAPALKLAD---IGVAMGQTGTDVAKEAADMILTDDDFATIL 667 (884)
T ss_pred HHHHHHHHHCCCEEEEECCCcccHHHHHhCC---eeEecCCCcCHHHHHhcCEEEcCCCHHHHH
Confidence 7888877777788999999999999999999 788887544444445688888 5577754
No 104
>PTZ00445 p36-lilke protein; Provisional
Probab=99.33 E-value=1.6e-11 Score=84.50 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=83.1
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCCh---------------HHHHHHHHHcCCcCccceeEecC-----------cccC
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPR---------------ANAELMITKLGLSGFFEAIIIGD-----------ECER 61 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~---------------~~~~~~l~~~~l~~~f~~i~~~~-----------~~~~ 61 (145)
+.|.++.++..|++.|++++|+|=+++ +.++..|+.-+-+..++.++... ..+.
T Consensus 76 ~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl 155 (219)
T PTZ00445 76 VTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGL 155 (219)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcc
Confidence 578899999999999999999997654 35677777655444444444221 1366
Q ss_pred CCCChHH--H--HHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCC
Q 036267 62 AKPFPDP--Y--LKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 62 ~kp~~~~--~--~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g 109 (145)
.||+|.. | +++++++|++|++|++|+|+...+++|++.|+.++.+..+
T Consensus 156 ~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 156 DAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred cCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence 8999998 8 9999999999999999999999999999999999999643
No 105
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.30 E-value=1.3e-11 Score=87.99 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=77.7
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHH--HHHHHcCCcC-ccceeEecCcccCCCCChHHHHHHHHHcCCCC
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAE--LMITKLGLSG-FFEAIIIGDECERAKPFPDPYLKAIEILNVSK 80 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~--~~l~~~~l~~-~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~ 80 (145)
...+++||+.++|++|+++|++++++||+++.... ..++.+|+.. +|+.++++.+... ..+...+++++.++
T Consensus 21 ~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~-----~~l~~~~~~~~~~~ 95 (242)
T TIGR01459 21 DGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIAV-----QMILESKKRFDIRN 95 (242)
T ss_pred cCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHHH-----HHHHhhhhhccCCC
Confidence 34678999999999999999999999999887665 7899999998 9999998876532 45666777888889
Q ss_pred CcEEEEecCHHhHHHHHhcCC
Q 036267 81 DHTFVFEDSVSGIKAGVAADL 101 (145)
Q Consensus 81 ~~~~~iGD~~~Di~~a~~~G~ 101 (145)
.++++|||+..|++.....|.
T Consensus 96 ~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 96 GIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred ceEEEeCCcccchhhhcCCCc
Confidence 999999999999887765553
No 106
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.29 E-value=7.2e-11 Score=83.95 Aligned_cols=49 Identities=20% Similarity=0.326 Sum_probs=45.5
Q ss_pred CCCCChHHHHHHHHHcCCCCCcE-EEEecCH-HhHHHHHhcCCEEEEEcCC
Q 036267 61 RAKPFPDPYLKAIEILNVSKDHT-FVFEDSV-SGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 61 ~~kp~~~~~~~~~~~~~~~~~~~-~~iGD~~-~Di~~a~~~G~~~i~v~~g 109 (145)
..||++.+|+.++++++.++.++ +||||++ +||.+|+++|+++++|.+|
T Consensus 186 ~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 186 VGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLTG 236 (236)
T ss_pred ecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEecC
Confidence 35899999999999999988887 9999999 8999999999999999876
No 107
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.28 E-value=3.8e-11 Score=98.77 Aligned_cols=112 Identities=14% Similarity=0.180 Sum_probs=87.4
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEE
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
-+++||+.+.|++|++.|++++++|+.....++.+.+.+|+.++|..+. |+....++++++.++++++|
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~~~~-----------p~~K~~~i~~l~~~~~~v~~ 717 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVL-----------PDGKAEAIKRLQSQGRQVAM 717 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEeCCC-----------HHHHHHHHHHHhhcCCEEEE
Confidence 4679999999999999999999999999999999999999976554321 33455677777878889999
Q ss_pred EecCHHhHHHHHhcCCEEEEEcCCCC-hHHhhccccceeecCCCChh
Q 036267 86 FEDSVSGIKAGVAADLHVVGLATRNP-ERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 86 iGD~~~Di~~a~~~G~~~i~v~~g~~-~~~~~~~~~~~~~~~l~e~~ 131 (145)
|||+.||+.+++++|+ ++++|.. .............+++.++.
T Consensus 718 vGDg~nD~~al~~Agv---gia~g~g~~~a~~~ad~vl~~~~~~~i~ 761 (834)
T PRK10671 718 VGDGINDAPALAQADV---GIAMGGGSDVAIETAAITLMRHSLMGVA 761 (834)
T ss_pred EeCCHHHHHHHHhCCe---eEEecCCCHHHHHhCCEEEecCCHHHHH
Confidence 9999999999999995 7777743 33333333445556777654
No 108
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.27 E-value=5.9e-11 Score=83.03 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=85.2
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCc-------c---cCCCCChHHHHHHHHH
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDE-------C---ERAKPFPDPYLKAIEI 75 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~-------~---~~~kp~~~~~~~~~~~ 75 (145)
.+++||+.++++.++++|++++|+|++....++.+.+.+|++..+...+..++ . -.++-+.....+.+++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~ 155 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAE 155 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999988855444443 1 1122346778889999
Q ss_pred cCCCCCcEEEEecCHHhHHHHHhcCCEEEEE
Q 036267 76 LNVSKDHTFVFEDSVSGIKAGVAADLHVVGL 106 (145)
Q Consensus 76 ~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v 106 (145)
+|+++++++++|||.||+.+-..+|.+.+.-
T Consensus 156 ~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n 186 (212)
T COG0560 156 LGIPLEETVAYGDSANDLPMLEAAGLPIAVN 186 (212)
T ss_pred cCCCHHHeEEEcCchhhHHHHHhCCCCeEeC
Confidence 9999999999999999999999999665544
No 109
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.19 E-value=1.6e-10 Score=83.35 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=84.0
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCCh-----HHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPR-----ANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~-----~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
++++.++++.++..+..+.++++... ...+.+.+.+++...+.....-+-....-.++..++.+++.+|+++++|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~ 218 (272)
T PRK10530 139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNV 218 (272)
T ss_pred eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHe
Confidence 55677777777777777777776432 2233334444433111000000111223345789999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhHHHHhhhh
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAALEEL 139 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~ 139 (145)
++|||+.||+++++.+|+ ++++++..+.+. ..+++++.+-.+-.+...++.+
T Consensus 219 i~~GD~~NDi~m~~~ag~---~vamgna~~~lk-~~Ad~v~~~n~~dGv~~~l~~~ 270 (272)
T PRK10530 219 VAFGDNFNDISMLEAAGL---GVAMGNADDAVK-ARADLVIGDNTTPSIAEFIYSH 270 (272)
T ss_pred EEeCCChhhHHHHHhcCc---eEEecCchHHHH-HhCCEEEecCCCCcHHHHHHHH
Confidence 999999999999999995 666665555553 5689999888887777776653
No 110
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=99.17 E-value=4.3e-10 Score=71.58 Aligned_cols=121 Identities=15% Similarity=0.201 Sum_probs=97.3
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
..-++|+.+.+.++.|++. +.++|.|+.....+...++..|+. .++++...+ +++-..++++++-+.+.|
T Consensus 27 tgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~--~~rv~a~a~-------~e~K~~ii~eLkk~~~k~ 96 (152)
T COG4087 27 TGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIP--VERVFAGAD-------PEMKAKIIRELKKRYEKV 96 (152)
T ss_pred cCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCc--eeeeecccC-------HHHHHHHHHHhcCCCcEE
Confidence 3457899999999999999 999999999999999999998865 355554333 678889999999888999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhHHHHhh
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAALE 137 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~~~ 137 (145)
+||||+.||+.+.+++....+-+..++.++... ..++.++.+..|+ .+++.
T Consensus 97 vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l-~~ADvvik~i~e~--ldl~~ 147 (152)
T COG4087 97 VMVGNGANDILALREADLGICTIQQEGVPERLL-LTADVVLKEIAEI--LDLLK 147 (152)
T ss_pred EEecCCcchHHHhhhcccceEEeccCCcchHHH-hhchhhhhhHHHH--HHHhh
Confidence 999999999999999998877777654444332 3489999988883 44443
No 111
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.15 E-value=7.2e-10 Score=74.51 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=75.3
Q ss_pred cccCcccCCHHHHHHHHHhCCCc--EEEEeCCC-------hHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHH
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLK--RAAVTNSP-------RANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAI 73 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~--~~i~s~~~-------~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~ 73 (145)
..+-++.|.+.+.++++++.+.. ++|+||+. ...++.+-+.+|+. ++. ....|| ..+..++
T Consensus 55 ~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp-----vl~---h~~kKP--~~~~~i~ 124 (168)
T PF09419_consen 55 PYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP-----VLR---HRAKKP--GCFREIL 124 (168)
T ss_pred CCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc-----EEE---eCCCCC--ccHHHHH
Confidence 45567889999999999998865 99999983 56677777777754 111 124566 5566666
Q ss_pred HHcCC-----CCCcEEEEecCH-HhHHHHHhcCCEEEEEcCC
Q 036267 74 EILNV-----SKDHTFVFEDSV-SGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 74 ~~~~~-----~~~~~~~iGD~~-~Di~~a~~~G~~~i~v~~g 109 (145)
+.++. .|+++++|||.+ .|+.+|+..|+.++++..|
T Consensus 125 ~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~g 166 (168)
T PF09419_consen 125 KYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDG 166 (168)
T ss_pred HHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecC
Confidence 66653 599999999999 7999999999999999876
No 112
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.10 E-value=2.8e-09 Score=75.14 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=92.0
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc-----ceeEec--C----------------------
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF-----EAIIIG--D---------------------- 57 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f-----~~i~~~--~---------------------- 57 (145)
.+.|...++|++++++|++++++|+.+...+...++.+++..++ ..++.. .
T Consensus 20 ~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (230)
T PRK01158 20 RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVGFDGKRIFLGDIEECEKAYSELKKRF 99 (230)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEEEecCeEEEEcCCCCEEEEcchHHHHHHHHHHHHhc
Confidence 46788999999999999999999999988777777777665442 011100 0
Q ss_pred ----------c-----------------------------------------ccCCCCChHHHHHHHHHcCCCCCcEEEE
Q 036267 58 ----------E-----------------------------------------CERAKPFPDPYLKAIEILNVSKDHTFVF 86 (145)
Q Consensus 58 ----------~-----------------------------------------~~~~kp~~~~~~~~~~~~~~~~~~~~~i 86 (145)
+ ......+...+..+++.++++++++++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~ 179 (230)
T PRK01158 100 PEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAI 179 (230)
T ss_pred cccceeeecCCcccccceeeecccccHHHHHHHHHHcCCcEEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEE
Confidence 0 0001123456677888889999999999
Q ss_pred ecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhHHHHhhhh
Q 036267 87 EDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAALEEL 139 (145)
Q Consensus 87 GD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~ 139 (145)
||+.||+.+++.+|.. ++.++..+.... .++++..+-.+-.....++.+
T Consensus 180 GD~~NDi~m~~~ag~~---vam~Na~~~vk~-~a~~v~~~n~~~Gv~~~l~~~ 228 (230)
T PRK01158 180 GDSENDLEMFEVAGFG---VAVANADEELKE-AADYVTEKSYGEGVAEAIEHL 228 (230)
T ss_pred CCchhhHHHHHhcCce---EEecCccHHHHH-hcceEecCCCcChHHHHHHHH
Confidence 9999999999999954 444544444443 588888888887777776653
No 113
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.09 E-value=3.1e-09 Score=74.65 Aligned_cols=129 Identities=16% Similarity=0.092 Sum_probs=89.9
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccc-----eeEecC------------------------
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFE-----AIIIGD------------------------ 57 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~-----~i~~~~------------------------ 57 (145)
.+.+...++|++++++|++++++|+.+...+...++.+++..++- .++...
T Consensus 15 ~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (225)
T TIGR01482 15 AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAENGGEISYNEGMDDIFLAYLEEEWFLDIVIAKTF 94 (225)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeEEEecCcEEEeCCCCceEEecccCHHHHHHHHHhccc
Confidence 456778899999999999999999998877777776665433210 000000
Q ss_pred ------------------------------------------------cccCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 036267 58 ------------------------------------------------ECERAKPFPDPYLKAIEILNVSKDHTFVFEDS 89 (145)
Q Consensus 58 ------------------------------------------------~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~ 89 (145)
-.....++...+..+++.+|++++++++|||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~ 174 (225)
T TIGR01482 95 PFSRLKVQYPRRASLVKMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDS 174 (225)
T ss_pred chhhhccccccccceEEEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCC
Confidence 00111234566788889999999999999999
Q ss_pred HHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChh----HHHHhhhh
Q 036267 90 VSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPK----LWAALEEL 139 (145)
Q Consensus 90 ~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~----~~~~~~~~ 139 (145)
.||+.+++.+| ++++.++..+... ..++++..+-.+-. +...++.+
T Consensus 175 ~NDi~m~~~ag---~~vam~Na~~~~k-~~A~~vt~~~~~~G~~~~v~~~l~~~ 224 (225)
T TIGR01482 175 ENDIDLFEVPG---FGVAVANAQPELK-EWADYVTESPYGEGGAEAIGEILQAI 224 (225)
T ss_pred HhhHHHHHhcC---ceEEcCChhHHHH-HhcCeecCCCCCCcHHHHHHHHHHhh
Confidence 99999999999 4555565444444 35888887777766 55555543
No 114
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.08 E-value=2.3e-10 Score=84.79 Aligned_cols=72 Identities=18% Similarity=0.104 Sum_probs=58.2
Q ss_pred cCCCCChHHHHHHHHHc--------CC-----CCCcEEEEecCH-HhHHHHHhcCCEEEEEcCCC-ChHHh-hcccccee
Q 036267 60 ERAKPFPDPYLKAIEIL--------NV-----SKDHTFVFEDSV-SGIKAGVAADLHVVGLATRN-PERLL-LDAKASFI 123 (145)
Q Consensus 60 ~~~kp~~~~~~~~~~~~--------~~-----~~~~~~~iGD~~-~Di~~a~~~G~~~i~v~~g~-~~~~~-~~~~~~~~ 123 (145)
..+||++.+|+.+++.+ +. ++++++||||++ .||.+|+++||.+++|.+|. +..+. ....|+++
T Consensus 230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p~~v 309 (321)
T TIGR01456 230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKPTLI 309 (321)
T ss_pred EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCCCEE
Confidence 45999999999988887 43 447999999999 89999999999999999983 32221 23458999
Q ss_pred ecCCCChh
Q 036267 124 IKDYEDPK 131 (145)
Q Consensus 124 ~~~l~e~~ 131 (145)
++++.|+-
T Consensus 310 v~~l~e~~ 317 (321)
T TIGR01456 310 VNDVFDAV 317 (321)
T ss_pred ECCHHHHH
Confidence 99998864
No 115
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=99.06 E-value=2.4e-09 Score=87.16 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=80.3
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEE
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
-+++|++.+++++|+++|++++++|+.....++.+.+.+|+..++. . . |+-...++++++ .+.+++|
T Consensus 567 d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~~~~------~----~--p~~K~~~v~~l~-~~~~v~m 633 (741)
T PRK11033 567 DTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDFRAG------L----L--PEDKVKAVTELN-QHAPLAM 633 (741)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCeecC------C----C--HHHHHHHHHHHh-cCCCEEE
Confidence 4789999999999999999999999999999999999999963222 1 1 233334555555 3468999
Q ss_pred EecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceee--cCCCChh
Q 036267 86 FEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFII--KDYEDPK 131 (145)
Q Consensus 86 iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~--~~l~e~~ 131 (145)
|||+.||..+.+.++ ++++.|....... ..++.++ +++.++.
T Consensus 634 vGDgiNDapAl~~A~---vgia~g~~~~~a~-~~adivl~~~~l~~l~ 677 (741)
T PRK11033 634 VGDGINDAPAMKAAS---IGIAMGSGTDVAL-ETADAALTHNRLRGLA 677 (741)
T ss_pred EECCHHhHHHHHhCC---eeEEecCCCHHHH-HhCCEEEecCCHHHHH
Confidence 999999999999999 7777764332222 2355544 5565544
No 116
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.06 E-value=2.5e-09 Score=75.60 Aligned_cols=113 Identities=14% Similarity=0.202 Sum_probs=87.3
Q ss_pred ccCcccCCHHHHHHHH--HhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc---------------cCCC-C-
Q 036267 4 EQLKALNGLDNVKKWV--EGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC---------------ERAK-P- 64 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l--~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~---------------~~~k-p- 64 (145)
..+++.||+.++++.+ .+.|+.++|+|++...+++.+|+..|+...|+.|++.... .+.+ |
T Consensus 68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~ 147 (234)
T PF06888_consen 68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPP 147 (234)
T ss_pred HcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCC
Confidence 4678999999999999 5689999999999999999999999999999888887311 0000 1
Q ss_pred ---ChHHHHHHHHH---cCCCCCcEEEEecCHHhHHHHHhcCC-EEEEEcCCCChHHhh
Q 036267 65 ---FPDPYLKAIEI---LNVSKDHTFVFEDSVSGIKAGVAADL-HVVGLATRNPERLLL 116 (145)
Q Consensus 65 ---~~~~~~~~~~~---~~~~~~~~~~iGD~~~Di~~a~~~G~-~~i~v~~g~~~~~~~ 116 (145)
+...+.+++++ .|....+++||||+.+|+.++.+.+- +.+....|++-..+.
T Consensus 148 NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R~~~~l~~~i 206 (234)
T PF06888_consen 148 NMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPRKGYPLHKLI 206 (234)
T ss_pred ccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecCCCChHHHHH
Confidence 13445555555 36778999999999999999999776 467776776544433
No 117
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.01 E-value=7.6e-09 Score=72.40 Aligned_cols=123 Identities=16% Similarity=0.108 Sum_probs=87.0
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccc-----eeEecCc----------------------
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFE-----AIIIGDE---------------------- 58 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~-----~i~~~~~---------------------- 58 (145)
-++.|...++|++|+++|++++++|+.+...+...++.+++..++- .++....
T Consensus 17 ~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~~NGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (215)
T TIGR01487 17 RMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIFYNKEDIFLANMEEEWFLDEEKKKRFP 96 (215)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEEccCcEEEeCCCcEEEecccchhhHHHhhhhhhh
Confidence 3577899999999999999999999999888888888777654320 1111000
Q ss_pred ---------------------------------------------ccCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhH
Q 036267 59 ---------------------------------------------CERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGI 93 (145)
Q Consensus 59 ---------------------------------------------~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di 93 (145)
...+-.+...++.+++.++++++++++|||+.||+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~ 176 (215)
T TIGR01487 97 RDRLSNEYPRASLVIMREGKDVDEVREIIKERGLNLVDSGFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDI 176 (215)
T ss_pred hhhcccccceeEEEEecCCccHHHHHHHHHhCCeEEEecCceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHH
Confidence 00011233556778888899999999999999999
Q ss_pred HHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhH
Q 036267 94 KAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKL 132 (145)
Q Consensus 94 ~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~ 132 (145)
++++.+| ++++.++..+++.. .++++..+-.+-.+
T Consensus 177 ~ml~~ag---~~vam~na~~~~k~-~A~~v~~~~~~~Gv 211 (215)
T TIGR01487 177 DLFRVVG---FKVAVANADDQLKE-IADYVTSNPYGEGV 211 (215)
T ss_pred HHHHhCC---CeEEcCCccHHHHH-hCCEEcCCCCCchh
Confidence 9999999 44555555555444 47888876665443
No 118
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.97 E-value=8.9e-09 Score=85.65 Aligned_cols=120 Identities=15% Similarity=0.189 Sum_probs=88.4
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc----ceeEecCc----------------ccCCCCCh
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF----EAIIIGDE----------------CERAKPFP 66 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f----~~i~~~~~----------------~~~~kp~~ 66 (145)
+++|++.+++++|+++|+++.++|+.....+..+.+.+|+...- ...+.+.+ .-..+-.|
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P 616 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEP 616 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCH
Confidence 68999999999999999999999999999999999999985421 11222111 11223345
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecC--CCCh
Q 036267 67 DPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKD--YEDP 130 (145)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~--l~e~ 130 (145)
+...++++.++...+.+.|+||+.||+.+.+.++ ++++.|... +..+..+++++.+ +..+
T Consensus 617 ~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~Ad---VGia~g~g~-~~ak~aAD~vl~dd~f~~i 678 (917)
T TIGR01116 617 SHKSELVELLQEQGEIVAMTGDGVNDAPALKKAD---IGIAMGSGT-EVAKEASDMVLADDNFATI 678 (917)
T ss_pred HHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCC---eeEECCCCc-HHHHHhcCeEEccCCHHHH
Confidence 5667777777766778889999999999999999 577776332 3334458888876 5554
No 119
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.96 E-value=1.1e-08 Score=73.77 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=69.4
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCCCh---HHHHHHHHHcCCcCcc-ceeEecCcccCCCCChHHHHHHHHHcCC
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNSPR---ANAELMITKLGLSGFF-EAIIIGDECERAKPFPDPYLKAIEILNV 78 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~---~~~~~~l~~~~l~~~f-~~i~~~~~~~~~kp~~~~~~~~~~~~~~ 78 (145)
.....++||+.++|+.++++|++++++||.+. ......|+.+|+..++ +.++..++ .++++.....+.+.+++
T Consensus 114 ~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~---~~~K~~rr~~I~~~y~I 190 (266)
T TIGR01533 114 AAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKD---KSSKESRRQKVQKDYEI 190 (266)
T ss_pred cCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCC---CCCcHHHHHHHHhcCCE
Confidence 34677999999999999999999999999874 4455778889997654 66766643 24566777777776666
Q ss_pred CCCcEEEEecCHHhHHHHHh
Q 036267 79 SKDHTFVFEDSVSGIKAGVA 98 (145)
Q Consensus 79 ~~~~~~~iGD~~~Di~~a~~ 98 (145)
+++|||+++|+..+..
T Consensus 191 ----vl~vGD~~~Df~~~~~ 206 (266)
T TIGR01533 191 ----VLLFGDNLLDFDDFFY 206 (266)
T ss_pred ----EEEECCCHHHhhhhhc
Confidence 8999999999976443
No 120
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.95 E-value=3.3e-08 Score=71.36 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=52.5
Q ss_pred HHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhHHHHhhhh
Q 036267 69 YLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAALEEL 139 (145)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~ 139 (145)
+..+++.+|+++++++.|||+.||+.+.+.+| ++++.++..+.+.. .++++..+-.+-.+...++.+
T Consensus 201 l~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag---~~vAm~NA~~~vK~-~A~~vt~~n~~dGva~~i~~~ 267 (270)
T PRK10513 201 VKSLAEHLGIKPEEVMAIGDQENDIAMIEYAG---VGVAMGNAIPSVKE-VAQFVTKSNLEDGVAFAIEKY 267 (270)
T ss_pred HHHHHHHhCCCHHHEEEECCchhhHHHHHhCC---ceEEecCccHHHHH-hcCeeccCCCcchHHHHHHHH
Confidence 35567778899999999999999999999999 56666655555544 589998888887777766654
No 121
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.89 E-value=1.7e-08 Score=81.14 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=82.2
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEE
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVF 86 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 86 (145)
+++|++++++++|++.|+++.++|+.....+..+-+.+|++++|-.+ .|+-..++++.+.-..+.+.|+
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~-----------~PedK~~iV~~lQ~~G~~VaMt 509 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAEC-----------KPEDKINVIREEQAKGHIVAMT 509 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCC-----------CHHHHHHHHHHHHhCCCEEEEE
Confidence 68999999999999999999999999999999999999997644322 3666777777776656778899
Q ss_pred ecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceee
Q 036267 87 EDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFII 124 (145)
Q Consensus 87 GD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~ 124 (145)
||+.||..+-+++. ++++.|.. .+..+..++.++
T Consensus 510 GDGvNDAPALa~AD---VGIAMgsG-TdvAkeAADiVL 543 (673)
T PRK14010 510 GDGTNDAPALAEAN---VGLAMNSG-TMSAKEAANLID 543 (673)
T ss_pred CCChhhHHHHHhCC---EEEEeCCC-CHHHHHhCCEEE
Confidence 99999999999999 77777732 223333466654
No 122
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.87 E-value=2.8e-09 Score=69.93 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=71.4
Q ss_pred HHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHH
Q 036267 16 KKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKA 95 (145)
Q Consensus 16 l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~ 95 (145)
++.|...|++++|+|+......+...+.+|+...|..+ +.+...+..+++++++.+++|.||||.++|+..
T Consensus 44 ik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG~---------~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpv 114 (170)
T COG1778 44 IKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGI---------SDKLAAFEELLKKLNLDPEEVAYVGDDLVDLPV 114 (170)
T ss_pred HHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeech---------HhHHHHHHHHHHHhCCCHHHhhhhcCccccHHH
Confidence 67888999999999999999999999999998655443 223678999999999999999999999999999
Q ss_pred HHhcCCEEEEE
Q 036267 96 GVAADLHVVGL 106 (145)
Q Consensus 96 a~~~G~~~i~v 106 (145)
..++|.+++.-
T Consensus 115 m~~vGls~a~~ 125 (170)
T COG1778 115 MEKVGLSVAVA 125 (170)
T ss_pred HHHcCCccccc
Confidence 99999765544
No 123
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.84 E-value=3.1e-08 Score=79.92 Aligned_cols=110 Identities=18% Similarity=0.236 Sum_probs=85.0
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEE
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
-+++|++++++++|++.|+++.++|+..+..++.+-+.+|+++++-.+. |+-....++++.-.-..+.|
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~Aell-----------PedK~~~V~~l~~~g~~Vam 604 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAELL-----------PEDKAEIVRELQAEGRKVAM 604 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhheccCC-----------cHHHHHHHHHHHhcCCEEEE
Confidence 3688999999999999999999999999999999999999977665543 44555666666655578999
Q ss_pred EecCHHhHHHHHhcCCEEEEEcCCC-ChHHhhcccccee--ecCCCChh
Q 036267 86 FEDSVSGIKAGVAADLHVVGLATRN-PERLLLDAKASFI--IKDYEDPK 131 (145)
Q Consensus 86 iGD~~~Di~~a~~~G~~~i~v~~g~-~~~~~~~~~~~~~--~~~l~e~~ 131 (145)
|||+.||..+-..+. ++++.|. +.-..+ .++.+ -+++..+.
T Consensus 605 VGDGINDAPALA~Ad---VGiAmG~GtDvA~e--aADvvL~~~dL~~v~ 648 (713)
T COG2217 605 VGDGINDAPALAAAD---VGIAMGSGTDVAIE--AADVVLMRDDLSAVP 648 (713)
T ss_pred EeCCchhHHHHhhcC---eeEeecCCcHHHHH--hCCEEEecCCHHHHH
Confidence 999999999999998 7777774 333333 35543 34466644
No 124
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.82 E-value=2.7e-08 Score=79.98 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=80.2
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEE
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVF 86 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 86 (145)
++.||+++.+++|++.|+++.++|+.....+..+-+.+|++++|-.. .|+-...+++++.-..+-+.|+
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~-----------~PedK~~iV~~lQ~~G~~VaMt 513 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEA-----------TPEDKLALIRQEQAEGRLVAMT 513 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccC-----------CHHHHHHHHHHHHHcCCeEEEE
Confidence 57899999999999999999999999999999999999997543221 2666666777766556678999
Q ss_pred ecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceee
Q 036267 87 EDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFII 124 (145)
Q Consensus 87 GD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~ 124 (145)
||+.||..+-+++. ++++.|.. .+..+..++.++
T Consensus 514 GDGvNDAPALa~AD---VGIAMgsG-TdvAkeAADiVL 547 (679)
T PRK01122 514 GDGTNDAPALAQAD---VGVAMNSG-TQAAKEAGNMVD 547 (679)
T ss_pred CCCcchHHHHHhCC---EeEEeCCC-CHHHHHhCCEEE
Confidence 99999999999999 77776632 222223356544
No 125
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=98.81 E-value=4.4e-08 Score=68.11 Aligned_cols=122 Identities=16% Similarity=0.095 Sum_probs=96.8
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcC---CcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLG---LSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~---l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
.+|+++..+++++++.|++++|.|+++...++.++..-+ +..|++..|- .....|-..+.|..+.+..+.+++++
T Consensus 123 ~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfD--t~iG~K~e~~sy~~I~~~Ig~s~~ei 200 (254)
T KOG2630|consen 123 HVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFD--TTIGLKVESQSYKKIGHLIGKSPREI 200 (254)
T ss_pred cccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhh--ccccceehhHHHHHHHHHhCCChhhe
Confidence 689999999999999999999999999998888887543 4444444442 12356777899999999999999999
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccc-cceeecCCCCh
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAK-ASFIIKDYEDP 130 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~-~~~~~~~l~e~ 130 (145)
++.-|...-..+|+.+|+.+..+.+.++.......+ .-.++.+|..+
T Consensus 201 LfLTd~~~Ea~aa~~aGl~a~l~~rPgna~l~dd~~~~y~~i~~F~~l 248 (254)
T KOG2630|consen 201 LFLTDVPREAAAARKAGLQAGLVSRPGNAPLPDDAKVEYCVIWSFEIL 248 (254)
T ss_pred EEeccChHHHHHHHhcccceeeeecCCCCCCCcccccceeeeccchhh
Confidence 999999999999999999999998876655444332 23366666653
No 126
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.80 E-value=2.3e-08 Score=72.50 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=57.8
Q ss_pred Cccc-CCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHH
Q 036267 6 LKAL-NGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDP 68 (145)
Q Consensus 6 ~~~~-~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~ 68 (145)
+++. ||+.++|++|+++|++++|+|++.+..+...++.+|+..+|+.++++++....||.++.
T Consensus 144 v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv~~~kp~~e~ 207 (301)
T TIGR01684 144 VRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHKAEEYSTMST 207 (301)
T ss_pred cccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCccccCCCCccc
Confidence 5566 99999999999999999999999999999999999999999999999998888877643
No 127
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.80 E-value=3.4e-08 Score=79.33 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=77.4
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEE
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVF 86 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 86 (145)
+++|++++++++|++.|+++.++|+.....+..+.+.+|+++++-. . .|+-...+++.+.-....+.|+
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a~---------~--~PedK~~~v~~lq~~g~~Vamv 514 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAE---------A--TPEDKIALIRQEQAEGKLVAMT 514 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEcC---------C--CHHHHHHHHHHHHHcCCeEEEE
Confidence 6889999999999999999999999999999999999999754321 1 2445555555554445679999
Q ss_pred ecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceee
Q 036267 87 EDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFII 124 (145)
Q Consensus 87 GD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~ 124 (145)
||+.||..+-+.++ ++++.+...+ .....++.++
T Consensus 515 GDG~NDapAL~~Ad---vGiAm~~gt~-~akeaadivL 548 (675)
T TIGR01497 515 GDGTNDAPALAQAD---VGVAMNSGTQ-AAKEAANMVD 548 (675)
T ss_pred CCCcchHHHHHhCC---EeEEeCCCCH-HHHHhCCEEE
Confidence 99999999999999 5665553222 2223355544
No 128
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.80 E-value=2.2e-07 Score=65.64 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=91.2
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc-----ceeEec-----------------------
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF-----EAIIIG----------------------- 56 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f-----~~i~~~----------------------- 56 (145)
.-.+.|..+++|++|+++|++++++|+.+...+...+..+++..++ ..+...
T Consensus 13 ~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i~~~~~~~l~~~~i~~~~~~~i~~~~~ 92 (254)
T PF08282_consen 13 DGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNGALIDDPKGKILYEKPIDSDDVKKILKYLK 92 (254)
T ss_dssp TSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEEEETTTEEEEEESB-HHHHHHHHHHHH
T ss_pred CCeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccchhhhcccccceeeecccccchhhheeccchhheeehhh
Confidence 3447789999999999999999999999999999999988876443 111011
Q ss_pred -----------------Cc-------------------------------------------------------------
Q 036267 57 -----------------DE------------------------------------------------------------- 58 (145)
Q Consensus 57 -----------------~~------------------------------------------------------------- 58 (145)
..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 172 (254)
T PF08282_consen 93 EHNISFFFYTDDDIYIYENKDEEELFFEHKFFNFKESIVSEDDLEDEEIFKILFFPDPEDLEQLREELKKKFPNLIDVVR 172 (254)
T ss_dssp HTTCEEEEEESSEEEESSTTCHHHHHHHHHHTSCEEEESHHHHHHCSSESEEEEESCHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred hcccccccccceeeecccccccchhhhhhcccccccccccccccccccceeeeccccchhhhhhhhhhccccCcceeEEE
Confidence 00
Q ss_pred --------ccCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCCh
Q 036267 59 --------CERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDP 130 (145)
Q Consensus 59 --------~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~ 130 (145)
....-.+...+..+++.+|++++++++|||+.||+.+.+.+| .+++.++..+.+.. .++++..+-.+-
T Consensus 173 ~~~~~lei~~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~---~~~am~na~~~~k~-~a~~i~~~~~~~ 248 (254)
T PF08282_consen 173 SSPYFLEITPKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAG---YSVAMGNATPELKK-AADYITPSNNDD 248 (254)
T ss_dssp EETTEEEEEETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSS---EEEEETTS-HHHHH-HSSEEESSGTCT
T ss_pred ecccceEEeeCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcC---eEEEEcCCCHHHHH-hCCEEecCCCCC
Confidence 000001235567888899999999999999999999999999 66666665555554 488888887774
Q ss_pred hHH
Q 036267 131 KLW 133 (145)
Q Consensus 131 ~~~ 133 (145)
.++
T Consensus 249 gv~ 251 (254)
T PF08282_consen 249 GVA 251 (254)
T ss_dssp HHH
T ss_pred hHH
Confidence 343
No 129
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.77 E-value=3e-08 Score=67.79 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=63.1
Q ss_pred ccCCHH----HHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc--ceeEecCc-c---c--CCC---CChHHHHHH
Q 036267 8 ALNGLD----NVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF--EAIIIGDE-C---E--RAK---PFPDPYLKA 72 (145)
Q Consensus 8 ~~~g~~----~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f--~~i~~~~~-~---~--~~k---p~~~~~~~~ 72 (145)
++|++. ++|+.++++|++++|+|+++...++.+++.+|+...+ ..-+..+. . . .+. -+...+..+
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~ 165 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKEL 165 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHH
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHH
Confidence 345555 9999999999999999999999999999999987633 11111000 0 0 000 134455555
Q ss_pred ---HHHcCCCCCcEEEEecCHHhHHHHH
Q 036267 73 ---IEILNVSKDHTFVFEDSVSGIKAGV 97 (145)
Q Consensus 73 ---~~~~~~~~~~~~~iGD~~~Di~~a~ 97 (145)
... +.....+++||||.+|+.+++
T Consensus 166 ~~~~~~-~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 166 YIRDEE-DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHHHHH-THTCCEEEEEESSGGGHHHHH
T ss_pred HHHhhc-CCCCCeEEEEECCHHHHHHhC
Confidence 333 788999999999999999875
No 130
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.76 E-value=2e-07 Score=67.51 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=52.6
Q ss_pred HHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccce--eecCCCChhHHHHhhhhc
Q 036267 69 YLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASF--IIKDYEDPKLWAALEELD 140 (145)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~--~~~~l~e~~~~~~~~~~~ 140 (145)
++.+++.+|+++++++.|||+.||+.+-+.+| .+++.++..++... .+++ ++.+-.+-.+...++.+-
T Consensus 193 l~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag---~~vAm~Na~~~vK~-~A~~~~v~~~n~edGva~~l~~~~ 262 (272)
T PRK15126 193 LAVLSQHLGLSLADCMAFGDAMNDREMLGSVG---RGFIMGNAMPQLRA-ELPHLPVIGHCRNQAVSHYLTHWL 262 (272)
T ss_pred HHHHHHHhCCCHHHeEEecCCHHHHHHHHHcC---CceeccCChHHHHH-hCCCCeecCCCcchHHHHHHHHHh
Confidence 46677788999999999999999999999999 56666765555553 3554 777777877777777643
No 131
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.76 E-value=4.5e-08 Score=65.39 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=67.8
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc-Ccc-ceeEecCcccCCCCChHHHHHHHHHcCCCCCc
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS-GFF-EAIIIGDECERAKPFPDPYLKAIEILNVSKDH 82 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f-~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 82 (145)
.++++||+.++|+++++. +.++|+|++.+.++..+++.++.. .+| +.+++.++... +. ...+-.-++.+.+.
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~--~~---~KdL~~i~~~d~~~ 129 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGS--PH---TKSLLRLFPADESM 129 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCCC--Cc---cccHHHHcCCCccc
Confidence 467899999999999965 999999999999999999999988 488 77788776531 11 11121335778899
Q ss_pred EEEEecCHHhHHHHHhcC
Q 036267 83 TFVFEDSVSGIKAGVAAD 100 (145)
Q Consensus 83 ~~~iGD~~~Di~~a~~~G 100 (145)
+++|+|+..-...-..++
T Consensus 130 vvivDd~~~~~~~~~~N~ 147 (156)
T TIGR02250 130 VVIIDDREDVWPWHKRNL 147 (156)
T ss_pred EEEEeCCHHHhhcCccCE
Confidence 999999995444333344
No 132
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=98.75 E-value=8.7e-08 Score=73.72 Aligned_cols=104 Identities=15% Similarity=0.210 Sum_probs=72.9
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHc---------CCcCccceeEecCcc-----------------
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKL---------GLSGFFEAIIIGDEC----------------- 59 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~---------~l~~~f~~i~~~~~~----------------- 59 (145)
+..-|.+..+|++|+++|.+++++||++..++...+..+ .|.++||.|+.....
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~ 261 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTET 261 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTT
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCC
Confidence 344678999999999999999999999999999998864 478899998876320
Q ss_pred c---CCC---C-------ChHHHHHHHHHcCCCCCcEEEEecCH-HhHHHHHhc-CCEEEEEcCC
Q 036267 60 E---RAK---P-------FPDPYLKAIEILNVSKDHTFVFEDSV-SGIKAGVAA-DLHVVGLATR 109 (145)
Q Consensus 60 ~---~~k---p-------~~~~~~~~~~~~~~~~~~~~~iGD~~-~Di~~a~~~-G~~~i~v~~g 109 (145)
+ ..+ + ..+....+.+-+|+...+++||||+. .||...+.. ||.|++|..-
T Consensus 262 g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~E 326 (448)
T PF05761_consen 262 GKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPE 326 (448)
T ss_dssp SSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TT
T ss_pred CccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEehh
Confidence 0 000 0 01345667777899889999999999 699988886 9999999755
No 133
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=98.75 E-value=7.9e-08 Score=80.32 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=87.5
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc----------------cCCCCChHHHH
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC----------------ERAKPFPDPYL 70 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~----------------~~~kp~~~~~~ 70 (145)
++.|++.+++++|+++|+++.++|+.....+..+.+.+|+...-..++.+.+. -...-.|+-..
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~ 658 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQ 658 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHH
Confidence 68999999999999999999999999999999999999986422223332221 11223456666
Q ss_pred HHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeec--CCCCh
Q 036267 71 KAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIK--DYEDP 130 (145)
Q Consensus 71 ~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~--~l~e~ 130 (145)
.+++.+.-....+.|+||+.||..+-+++. |+|+.|....+.....++.++- ++.-+
T Consensus 659 ~iV~~lq~~g~vVam~GDGvNDapALk~Ad---VGIAmg~~gtdvAk~aADivL~dd~f~~I 717 (941)
T TIGR01517 659 LLVLMLKDMGEVVAVTGDGTNDAPALKLAD---VGFSMGISGTEVAKEASDIILLDDNFASI 717 (941)
T ss_pred HHHHHHHHCCCEEEEECCCCchHHHHHhCC---cceecCCCccHHHHHhCCEEEecCCHHHH
Confidence 666666555567999999999999999999 7777763333333345777665 45443
No 134
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.74 E-value=2.4e-07 Score=66.78 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=96.8
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccc-----eeEec----------------------
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFE-----AIIIG---------------------- 56 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~-----~i~~~---------------------- 56 (145)
..-++.+.++++|++++++|++++++|+.+...+...++.+++..++- .++..
T Consensus 17 ~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~~~~l~~~~~~~i~~~~~ 96 (264)
T COG0561 17 SNKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNGGELLFQKPLSREDVEELLELLE 96 (264)
T ss_pred CCCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecCCcEEeeecCCHHHHHHHHHHHH
Confidence 334478899999999999999999999999999999999888875420 00000
Q ss_pred -----------Cc-c-----------------------------------------------------------------
Q 036267 57 -----------DE-C----------------------------------------------------------------- 59 (145)
Q Consensus 57 -----------~~-~----------------------------------------------------------------- 59 (145)
.+ .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s 176 (264)
T COG0561 97 DFQGIALVLYTDDGIYLTKKRGTFAEARIGFANLSPVGREAAELEDNKIIALDKDHEILEELVEALRKRFPDLGLTVSSS 176 (264)
T ss_pred hccCceEEEEeccceeeccCCCcccccccccccccccccchhhcCcceEEEEecChHhHHHHHHHHhhhccccceEEEEc
Confidence 00 0
Q ss_pred --------cCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChh
Q 036267 60 --------ERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 60 --------~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~ 131 (145)
..+-.+...+..+++.+|+++++++.|||+.||+.+-+.+| .+|+.++..+.+.. .++++..+-.+-.
T Consensus 177 ~~~~lei~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag---~gvam~Na~~~~k~-~A~~vt~~n~~~G 252 (264)
T COG0561 177 GPISLDITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAG---LGVAMGNADEELKE-LADYVTTSNDEDG 252 (264)
T ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcC---eeeeccCCCHHHHh-hCCcccCCccchH
Confidence 00001223457788889999999999999999999999999 77777765555444 3667778888877
Q ss_pred HHHHhhhhc
Q 036267 132 LWAALEELD 140 (145)
Q Consensus 132 ~~~~~~~~~ 140 (145)
+...++.+.
T Consensus 253 v~~~l~~~~ 261 (264)
T COG0561 253 VAEALEKLL 261 (264)
T ss_pred HHHHHHHHh
Confidence 777776643
No 135
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=98.74 E-value=1.1e-07 Score=79.07 Aligned_cols=117 Identities=16% Similarity=0.152 Sum_probs=85.8
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc----------------cCCCCChHHHH
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC----------------ERAKPFPDPYL 70 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~----------------~~~kp~~~~~~ 70 (145)
+++|++.+++++|+++|+++.++|+.....+..+.+.+|+.. +.++++.+. -...-.|+--.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~--~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~ 627 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLEP--GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKS 627 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC--CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHH
Confidence 688999999999999999999999999999999999999852 122222211 11223466677
Q ss_pred HHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceee--cCCCC
Q 036267 71 KAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFII--KDYED 129 (145)
Q Consensus 71 ~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~--~~l~e 129 (145)
++++.+.-..+.+.|+||+.||..+-+.+. |+|+.|. ..+..+..++.++ ++|..
T Consensus 628 ~iV~~Lq~~G~vVamtGDGvNDaPALk~AD---VGIAmg~-gtdvAkeaADiVLldd~f~~ 684 (903)
T PRK15122 628 RVLKALQANGHTVGFLGDGINDAPALRDAD---VGISVDS-GADIAKESADIILLEKSLMV 684 (903)
T ss_pred HHHHHHHhCCCEEEEECCCchhHHHHHhCC---EEEEeCc-ccHHHHHhcCEEEecCChHH
Confidence 777777666677899999999999999999 6676663 2333334577665 44544
No 136
>PRK10976 putative hydrolase; Provisional
Probab=98.72 E-value=2.1e-07 Score=67.10 Aligned_cols=67 Identities=19% Similarity=0.135 Sum_probs=50.8
Q ss_pred HHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccc--eeecCCCChhHHHHhhhh
Q 036267 69 YLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKAS--FIIKDYEDPKLWAALEEL 139 (145)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~--~~~~~l~e~~~~~~~~~~ 139 (145)
++.+++.+|+++++++.|||+.||+.+.+.+| .+++.++..+.+.. .++ ++..+-.|-.+...++.+
T Consensus 195 l~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag---~~vAm~NA~~~vK~-~A~~~~v~~~n~edGVa~~l~~~ 263 (266)
T PRK10976 195 LEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAG---KGCIMGNAHQRLKD-LLPELEVIGSNADDAVPHYLRKL 263 (266)
T ss_pred HHHHHHHcCCCHHHeEEEcCCcccHHHHHHcC---CCeeecCCcHHHHH-hCCCCeecccCchHHHHHHHHHH
Confidence 46677778999999999999999999999999 55666655555554 344 677777776777666654
No 137
>PLN02645 phosphoglycolate phosphatase
Probab=98.72 E-value=2.5e-07 Score=68.41 Aligned_cols=90 Identities=21% Similarity=0.196 Sum_probs=70.9
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCC---hHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSP---RANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
.++||+.++|+.|+++|++++++||++ .......|+.+|+...++.++++.. .....++..+....+.
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~---------~~~~~l~~~~~~~~~~ 114 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSF---------AAAAYLKSINFPKDKK 114 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHH---------HHHHHHHhhccCCCCE
Confidence 689999999999999999999999988 4444556678898877788876543 4455555556544556
Q ss_pred EEEecCHHhHHHHHhcCCEEEE
Q 036267 84 FVFEDSVSGIKAGVAADLHVVG 105 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~ 105 (145)
+|++++..+.+.++.+|+.++.
T Consensus 115 V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 115 VYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred EEEEcCHHHHHHHHHCCCEEec
Confidence 8888889999999999998764
No 138
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.70 E-value=7.9e-08 Score=61.41 Aligned_cols=90 Identities=12% Similarity=0.206 Sum_probs=70.0
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCCh-HHHHHHHHHc-----
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFP-DPYLKAIEIL----- 76 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~-~~~~~~~~~~----- 76 (145)
..++++||.++++++.+++.|+.+..+|-+..+.+-..|..+++..||++++. .+-|.. .|+-+++++.
T Consensus 37 G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~Vi-----ePhP~K~~ML~~llr~i~~er~ 111 (164)
T COG4996 37 GREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVI-----EPHPYKFLMLSQLLREINTERN 111 (164)
T ss_pred CeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEe-----cCCChhHHHHHHHHHHHHHhhc
Confidence 45788999999999999999999999999999999999999999999999864 222222 2333444433
Q ss_pred -CCCCCcEEEEecCHHhHHHHH
Q 036267 77 -NVSKDHTFVFEDSVSGIKAGV 97 (145)
Q Consensus 77 -~~~~~~~~~iGD~~~Di~~a~ 97 (145)
.+.|++++|++|..--+....
T Consensus 112 ~~ikP~~Ivy~DDR~iH~~~Iw 133 (164)
T COG4996 112 QKIKPSEIVYLDDRRIHFGNIW 133 (164)
T ss_pred cccCcceEEEEecccccHHHHH
Confidence 469999999999874444333
No 139
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.69 E-value=1.3e-07 Score=64.29 Aligned_cols=94 Identities=11% Similarity=0.145 Sum_probs=71.5
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcC--cc--------ceeEecCcc----cCCCCChHH
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSG--FF--------EAIIIGDEC----ERAKPFPDP 68 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~--~f--------~~i~~~~~~----~~~kp~~~~ 68 (145)
.+..++-||++++..+|+++|..++++|++....+..+-+.+|++. -+ +.=+.+.+. ..+--++..
T Consensus 84 ~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~ 163 (227)
T KOG1615|consen 84 KQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEV 163 (227)
T ss_pred cCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHH
Confidence 3567889999999999999999999999999999999999999875 11 111222111 112223556
Q ss_pred HHHHHHHcCCCCCcEEEEecCHHhHHHHHh
Q 036267 69 YLKAIEILNVSKDHTFVFEDSVSGIKAGVA 98 (145)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~ 98 (145)
+..+.+ +.+...++||||+.+|+++..-
T Consensus 164 i~~lrk--~~~~~~~~mvGDGatDlea~~p 191 (227)
T KOG1615|consen 164 IALLRK--NYNYKTIVMVGDGATDLEAMPP 191 (227)
T ss_pred HHHHHh--CCChheeEEecCCccccccCCc
Confidence 666655 7888999999999999998776
No 140
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=98.69 E-value=1.4e-07 Score=79.42 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=87.8
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc----------ceeEecCccc----------------
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF----------EAIIIGDECE---------------- 60 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f----------~~i~~~~~~~---------------- 60 (145)
++.|++.++++.|+++|+++.++|+.....+..+.+.+|+.... ..++++.+..
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~V 725 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCLV 725 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCeE
Confidence 68999999999999999999999999999999999999985321 1233332211
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecC--CCCh
Q 036267 61 RAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKD--YEDP 130 (145)
Q Consensus 61 ~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~--l~e~ 130 (145)
...-.|+....+++.+.-....+.|+||+.||..+-+.++ ++|+.|.+..+.....++.++.+ +..+
T Consensus 726 ~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~Ad---VGIAmg~~gt~vak~aADivl~dd~f~~I 794 (1053)
T TIGR01523 726 IARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMAN---VGIAMGINGSDVAKDASDIVLSDDNFASI 794 (1053)
T ss_pred EEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCC---ccEecCCCccHHHHHhcCEEEecCCHHHH
Confidence 1233456666677766655677999999999999999999 77766633333334457777744 5553
No 141
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.69 E-value=9e-07 Score=63.36 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=54.6
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhc------cccceeecCCCChhHHHH
Q 036267 62 AKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLD------AKASFIIKDYEDPKLWAA 135 (145)
Q Consensus 62 ~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~------~~~~~~~~~l~e~~~~~~ 135 (145)
..++...+..+++.+++++++|++|||+.||+.+.+.++..++++..+. +++.. ....++.+....-.....
T Consensus 165 ~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~--~~~k~~~~~~~~~~~~~~~~~~~~Gi~e~ 242 (249)
T TIGR01485 165 GSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQ--EELLQWYDENAKDKIYHASERCAGGIIEA 242 (249)
T ss_pred CCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCCH--HHHHHHHHhcccCcEEEecCCCcHHHHHH
Confidence 4466677888889999999999999999999999999777778886542 22221 123366776666666665
Q ss_pred hhhh
Q 036267 136 LEEL 139 (145)
Q Consensus 136 ~~~~ 139 (145)
++.+
T Consensus 243 l~~~ 246 (249)
T TIGR01485 243 IAHF 246 (249)
T ss_pred HHHc
Confidence 5544
No 142
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.67 E-value=1.5e-07 Score=78.20 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=84.3
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc----------------cCCCCChHHHH
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC----------------ERAKPFPDPYL 70 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~----------------~~~kp~~~~~~ 70 (145)
++.|++.+++++|+++|+++.++|+.....+..+.+.+|+.. +.++++.+. -...-.|+...
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~--~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~ 627 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDA--GEVLIGSDIETLSDDELANLAERTTLFARLTPMHKE 627 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCc--cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHH
Confidence 678999999999999999999999999999999999999952 233333221 11233466677
Q ss_pred HHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceee
Q 036267 71 KAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFII 124 (145)
Q Consensus 71 ~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~ 124 (145)
++++.+.-....+.|+||+.||..+-+.+. |+|+.|. ..+..+..++.++
T Consensus 628 ~IV~~Lq~~G~vVam~GDGvNDaPALk~AD---VGIAmg~-gtdvAkeaADiVL 677 (902)
T PRK10517 628 RIVTLLKREGHVVGFMGDGINDAPALRAAD---IGISVDG-AVDIAREAADIIL 677 (902)
T ss_pred HHHHHHHHCCCEEEEECCCcchHHHHHhCC---EEEEeCC-cCHHHHHhCCEEE
Confidence 777777666677889999999999999999 7777763 2333344577665
No 143
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.67 E-value=6.7e-07 Score=64.14 Aligned_cols=60 Identities=23% Similarity=0.286 Sum_probs=44.1
Q ss_pred HHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhH
Q 036267 69 YLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKL 132 (145)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~ 132 (145)
+..+++.++++++++++|||+.||+.+.+.+|+.+ +.+...+... ..++++..+-.+-.+
T Consensus 193 i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~---a~~na~~~~k-~~a~~~~~~n~~dGV 252 (256)
T TIGR00099 193 LQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGV---AMGNADEELK-ALADYVTDSNNEDGV 252 (256)
T ss_pred HHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCcee---EecCchHHHH-HhCCEEecCCCCcch
Confidence 46677777889999999999999999999999653 3343344433 458888887666443
No 144
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.67 E-value=1.1e-07 Score=77.75 Aligned_cols=112 Identities=22% Similarity=0.190 Sum_probs=81.1
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc----------------------cCCC
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC----------------------ERAK 63 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~----------------------~~~k 63 (145)
-+++|++.+++++|+++|+++.++|+.....+..+.+.+|+.+. ++++++. -..+
T Consensus 441 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr 517 (755)
T TIGR01647 441 DPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTN---IYTADVLLKGDNRDDLPSGELGEMVEDADGFAE 517 (755)
T ss_pred CCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCC---CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEe
Confidence 36899999999999999999999999999999999999999642 1111110 1122
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceee
Q 036267 64 PFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFII 124 (145)
Q Consensus 64 p~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~ 124 (145)
-.|+-...+++.+.-....+.|+||+.||..+-+.+. ++++.+. ..+..+..++.++
T Consensus 518 ~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~Ad---VGIAm~~-gtdvAkeaADivL 574 (755)
T TIGR01647 518 VFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKAD---VGIAVAG-ATDAARSAADIVL 574 (755)
T ss_pred cCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCC---eeEEecC-CcHHHHHhCCEEE
Confidence 3456666677777666677999999999999999999 5555552 2222333456544
No 145
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.66 E-value=1.7e-07 Score=77.79 Aligned_cols=113 Identities=13% Similarity=0.165 Sum_probs=82.3
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc----------------cCCCCChHHH
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC----------------ERAKPFPDPY 69 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~----------------~~~kp~~~~~ 69 (145)
-+++|++++++++|+++|+++.++|+.....+..+.+.+|+.. +.++.+.+. -...-.|+-.
T Consensus 514 Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K 591 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDA--NDFLLGADIEELSDEELARELRKYHIFARLTPMQK 591 (867)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHH
Confidence 3689999999999999999999999999999999999999862 122222211 1122345666
Q ss_pred HHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceee
Q 036267 70 LKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFII 124 (145)
Q Consensus 70 ~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~ 124 (145)
.++++.+.-..+.+.|+||+.||..+-+.++ ++++.|. ..+..+..++.++
T Consensus 592 ~~iV~~lq~~G~vVam~GDGvNDapALk~Ad---VGIAmg~-gtdvAk~aADiVL 642 (867)
T TIGR01524 592 SRIIGLLKKAGHTVGFLGDGINDAPALRKAD---VGISVDT-AADIAKEASDIIL 642 (867)
T ss_pred HHHHHHHHhCCCEEEEECCCcccHHHHHhCC---EEEEeCC-ccHHHHHhCCEEE
Confidence 6666666655677889999999999999999 6666663 2333334466655
No 146
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.3e-07 Score=63.78 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=66.4
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccc--eeEec---------------Ccc--cCCCCC
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFE--AIIIG---------------DEC--ERAKPF 65 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~--~i~~~---------------~~~--~~~kp~ 65 (145)
.+++.||.++|++++++++++++|+|++-...++.++++.+=.+.++ .+++. ++. +..|
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK-- 148 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDK-- 148 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCc--
Confidence 47889999999999999999999999999999999999875222221 11111 111 2222
Q ss_pred hHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcC
Q 036267 66 PDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAAD 100 (145)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G 100 (145)
+ ..+.++.-+++.++|+||+..|+.+|+...
T Consensus 149 ~----~vI~~l~e~~e~~fy~GDsvsDlsaaklsD 179 (220)
T COG4359 149 S----SVIHELSEPNESIFYCGDSVSDLSAAKLSD 179 (220)
T ss_pred c----hhHHHhhcCCceEEEecCCcccccHhhhhh
Confidence 2 234455556777999999999999999987
No 147
>PRK11590 hypothetical protein; Provisional
Probab=98.58 E-value=9.9e-07 Score=61.70 Aligned_cols=96 Identities=8% Similarity=-0.033 Sum_probs=68.4
Q ss_pred CcccCCHHHHH-HHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecC-c---ccC--CCC-C-hHHHHHHHHHc
Q 036267 6 LKALNGLDNVK-KWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGD-E---CER--AKP-F-PDPYLKAIEIL 76 (145)
Q Consensus 6 ~~~~~g~~~~l-~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~-~---~~~--~kp-~-~~~~~~~~~~~ 76 (145)
+.++||+.+.| +.+++.|++++|+||++...++.+++.+++.. .+.+++.+ + .+. +.+ . .+-..++.+.+
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~-~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~ 172 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLP-RVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKI 172 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccc-cCceEEEEEEEEEccEECCccCCChHHHHHHHHHh
Confidence 56799999999 57888999999999999999999999988622 23333332 0 000 010 1 22234444445
Q ss_pred CCCCCcEEEEecCHHhHHHHHhcCCE
Q 036267 77 NVSKDHTFVFEDSVSGIKAGVAADLH 102 (145)
Q Consensus 77 ~~~~~~~~~iGD~~~Di~~a~~~G~~ 102 (145)
+.+...+.+-|||.+|+....-+|-+
T Consensus 173 ~~~~~~~~aY~Ds~~D~pmL~~a~~~ 198 (211)
T PRK11590 173 GTPLRLYSGYSDSKQDNPLLYFCQHR 198 (211)
T ss_pred CCCcceEEEecCCcccHHHHHhCCCC
Confidence 76777889999999999999988844
No 148
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.57 E-value=6.1e-07 Score=74.84 Aligned_cols=103 Identities=22% Similarity=0.200 Sum_probs=80.9
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccc--eeEecCcc----------------cCCCCCh
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFE--AIIIGDEC----------------ERAKPFP 66 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~--~i~~~~~~----------------~~~kp~~ 66 (145)
.-+|.++++++++.|+++|+++.++|+.....+..+-+.+|+...-. .++.+.+. -..+=.|
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP 624 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSP 624 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCH
Confidence 34789999999999999999999999999999999999999776543 25444332 1223446
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCC
Q 036267 67 DPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRN 110 (145)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~ 110 (145)
+...++++.+.-...-+.|+||+.||..+-+.|. |+|+.|.
T Consensus 625 ~qK~~IV~~lq~~g~vVamtGDGvNDapALk~AD---VGIamg~ 665 (917)
T COG0474 625 EQKARIVEALQKSGHVVAMTGDGVNDAPALKAAD---VGIAMGG 665 (917)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcC---ccEEecc
Confidence 6667777777666677889999999999999999 6665553
No 149
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=98.55 E-value=5.4e-07 Score=75.81 Aligned_cols=118 Identities=19% Similarity=0.142 Sum_probs=84.7
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc------------------------ceeEecCcc--
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF------------------------EAIIIGDEC-- 59 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f------------------------~~i~~~~~~-- 59 (145)
-++.|++.+++++++++|+++.++|+.....+..+.+.+|+...- ..++++.+.
T Consensus 567 Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~ 646 (997)
T TIGR01106 567 DPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKD 646 (997)
T ss_pred CCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhh
Confidence 367999999999999999999999999999999999999884211 023333221
Q ss_pred ----------------cCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhcccccee
Q 036267 60 ----------------ERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFI 123 (145)
Q Consensus 60 ----------------~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~ 123 (145)
-..+-.|+....+++.+.-....+.|+||+.||+.+-+.+. ++++.|....+.....++.+
T Consensus 647 l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~Ad---VGiamg~~G~~vak~aADiv 723 (997)
T TIGR01106 647 MTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKAD---IGVAMGIAGSDVSKQAADMI 723 (997)
T ss_pred CCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCC---cceecCCcccHHHHHhhceE
Confidence 12333455666666666555567889999999999999999 78877743333233446776
Q ss_pred ecC
Q 036267 124 IKD 126 (145)
Q Consensus 124 ~~~ 126 (145)
+-+
T Consensus 724 L~d 726 (997)
T TIGR01106 724 LLD 726 (997)
T ss_pred Eec
Confidence 654
No 150
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=98.52 E-value=4.6e-07 Score=73.22 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=87.3
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccc----eeEecCccc----------------CCCCCh
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFE----AIIIGDECE----------------RAKPFP 66 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~----~i~~~~~~~----------------~~kp~~ 66 (145)
+|+|+++++++.+++.|+++.++|+..+..+..+.+..|+...-+ ..+++.+.. ...-.|
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~P 663 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAEP 663 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEecCc
Confidence 689999999999999999999999999999999999999765544 344443211 112346
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceee
Q 036267 67 DPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFII 124 (145)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~ 124 (145)
+...++++.+.-..+=+.|-||+.||..+-+.+. |+|+.|.+-.+.....++.++
T Consensus 664 ~HK~kIVeaLq~~geivAMTGDGVNDApALK~Ad---IGIAMG~~GTdVaKeAsDMVL 718 (972)
T KOG0202|consen 664 QHKLKIVEALQSRGEVVAMTGDGVNDAPALKKAD---IGIAMGISGTDVAKEASDMVL 718 (972)
T ss_pred hhHHHHHHHHHhcCCEEEecCCCccchhhhhhcc---cceeecCCccHhhHhhhhcEE
Confidence 6777777777776777889999999999999999 888888544333333345443
No 151
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.45 E-value=2.3e-06 Score=53.11 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=56.8
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCCh---HHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCC
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPR---ANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKD 81 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~---~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 81 (145)
.-+++||+.++|+.|+++|++++++||++. ......|+.+|+.-.-+.++++.. .....+++. ....
T Consensus 12 g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~---------~~~~~l~~~-~~~~ 81 (101)
T PF13344_consen 12 GNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGM---------AAAEYLKEH-KGGK 81 (101)
T ss_dssp TTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHH---------HHHHHHHHH-TTSS
T ss_pred CCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHH---------HHHHHHHhc-CCCC
Confidence 346899999999999999999999999863 555666788898755567766443 333444443 3467
Q ss_pred cEEEEecCHHhHHHHHhcCC
Q 036267 82 HTFVFEDSVSGIKAGVAADL 101 (145)
Q Consensus 82 ~~~~iGD~~~Di~~a~~~G~ 101 (145)
+++++|.. ...+..+.+|+
T Consensus 82 ~v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 82 KVYVLGSD-GLREELREAGF 100 (101)
T ss_dssp EEEEES-H-HHHHHHHHTTE
T ss_pred EEEEEcCH-HHHHHHHHcCC
Confidence 78888855 44555555553
No 152
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.43 E-value=3e-06 Score=61.44 Aligned_cols=113 Identities=16% Similarity=0.131 Sum_probs=65.9
Q ss_pred HHhCCCcEEEE---eCCChHHHHHHHHHcCCc----CccceeEecCcccCCCCChHHHHHHHHHcCCCC-CcEEEEecCH
Q 036267 19 VEGCGLKRAAV---TNSPRANAELMITKLGLS----GFFEAIIIGDECERAKPFPDPYLKAIEILNVSK-DHTFVFEDSV 90 (145)
Q Consensus 19 l~~~g~~~~i~---s~~~~~~~~~~l~~~~l~----~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~-~~~~~iGD~~ 90 (145)
+++.++...++ ++.....+...++..++. .++..++ ... .+...+..+++.+++++ +++++|||+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~-----~~~-~Kg~al~~l~~~~~i~~~~~v~~~GDs~ 217 (273)
T PRK00192 144 AKDREFSEPFLWNGSEAAKERFEEALKRLGLKVTRGGRFLHLL-----GGG-DKGKAVRWLKELYRRQDGVETIALGDSP 217 (273)
T ss_pred HHhcccCCceeecCchHHHHHHHHHHHHcCCEEEECCeEEEEe-----CCC-CHHHHHHHHHHHHhccCCceEEEEcCCh
Confidence 33444544444 333344455555555543 2222222 223 45678999999999999 9999999999
Q ss_pred HhHHHHHhcCCEEEEEcCCCChHHhh---cccc-ceee--cCCCChhHHHHhhhhc
Q 036267 91 SGIKAGVAADLHVVGLATRNPERLLL---DAKA-SFII--KDYEDPKLWAALEELD 140 (145)
Q Consensus 91 ~Di~~a~~~G~~~i~v~~g~~~~~~~---~~~~-~~~~--~~l~e~~~~~~~~~~~ 140 (145)
||+.+++.+|.. +..++..+... ...+ +.+. .+-.+-.....++.+-
T Consensus 218 NDi~m~~~ag~~---vam~NA~~~~k~~~~~~a~~~v~~~~~~~~~Gv~~~l~~~~ 270 (273)
T PRK00192 218 NDLPMLEAADIA---VVVPGPDGPNPPLLPGIADGEFILASAPGPEGWAEAINKLL 270 (273)
T ss_pred hhHHHHHhCCee---EEeCCCCCCCcccCccccCCceEEecCCCcHHHHHHHHHHH
Confidence 999999999944 44443222222 1223 3444 4444445566665543
No 153
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.42 E-value=1.3e-06 Score=60.69 Aligned_cols=113 Identities=13% Similarity=0.138 Sum_probs=82.9
Q ss_pred ccCcccCCHHHHHHHHHhCC-CcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc----c--CCCCC-----------
Q 036267 4 EQLKALNGLDNVKKWVEGCG-LKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC----E--RAKPF----------- 65 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g-~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~----~--~~kp~----------- 65 (145)
..++..||+.++++.+++.| +.+.|+|.....+++.+|+.+|+.+.|..|++.... + .-.|+
T Consensus 81 r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPs 160 (256)
T KOG3120|consen 81 RSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPS 160 (256)
T ss_pred hcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCch
Confidence 35678999999999999998 599999999999999999999999999888876321 0 00011
Q ss_pred ----hHHHHHH---HHHcCCCCCcEEEEecCHHhHHHHHhc-CCEEEEEcCCCChHHhh
Q 036267 66 ----PDPYLKA---IEILNVSKDHTFVFEDSVSGIKAGVAA-DLHVVGLATRNPERLLL 116 (145)
Q Consensus 66 ----~~~~~~~---~~~~~~~~~~~~~iGD~~~Di~~a~~~-G~~~i~v~~g~~~~~~~ 116 (145)
...+..+ ..+-|+.-++.+|+||+-+|+.+.... +.+++....|++-..+.
T Consensus 161 NmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampRkgfpl~k~~ 219 (256)
T KOG3120|consen 161 NMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPRKGFPLWKLI 219 (256)
T ss_pred hhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecccCCCchHhhh
Confidence 1122222 233477778999999999999988775 44666666677654433
No 154
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.42 E-value=9.1e-07 Score=64.35 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=50.5
Q ss_pred ccCccc-CCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc
Q 036267 4 EQLKAL-NGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC 59 (145)
Q Consensus 4 ~~~~~~-~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~ 59 (145)
..+++. |++.++|++|+++|++++|+||+++..+...++.+|+..+|+.++++++.
T Consensus 144 ~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~i 200 (303)
T PHA03398 144 EPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGRK 200 (303)
T ss_pred CccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCCc
Confidence 345566 99999999999999999999999999999999999999999998888764
No 155
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.42 E-value=2.6e-06 Score=59.79 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=49.4
Q ss_pred eCCChHHHHHHHHHcCCc----CccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEE
Q 036267 30 TNSPRANAELMITKLGLS----GFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVV 104 (145)
Q Consensus 30 s~~~~~~~~~~l~~~~l~----~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i 104 (145)
++.....+...++..++. .+|..+.. ..-.+...+..+++.+|+++++|++|||+.||+.+.+.+|..++
T Consensus 146 ~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~-----~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va 219 (221)
T TIGR02463 146 SDSRMPRFTALLADLGLAIVQGNRFSHVLG-----ASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVV 219 (221)
T ss_pred chhHHHHHHHHHHHcCCeEEecCCeeEEec-----CCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEE
Confidence 344455566666665654 22222222 22234668899999999999999999999999999999996644
No 156
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.42 E-value=2.8e-06 Score=60.26 Aligned_cols=110 Identities=9% Similarity=0.006 Sum_probs=70.1
Q ss_pred CcEEEEeCCC----hHHHHHHHHHcCCcCccceeEec----CcccCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHH
Q 036267 24 LKRAAVTNSP----RANAELMITKLGLSGFFEAIIIG----DECERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKA 95 (145)
Q Consensus 24 ~~~~i~s~~~----~~~~~~~l~~~~l~~~f~~i~~~----~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~ 95 (145)
+++.+..... ...+...++..++. +..+++. +-.....++...+..++++++++++++++|||+.||+.+
T Consensus 113 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~m 190 (236)
T TIGR02471 113 FKISYLLDPEGEPILPQIRQRLRQQSQA--AKVILSCGWFLDVLPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDEEM 190 (236)
T ss_pred eeEEEEECcccchHHHHHHHHHHhccCC--EEEEEECCceEEEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHH
Confidence 5566654432 12334445544422 2334444 223556788999999999999999999999999999999
Q ss_pred HHhcCCEEEEEcCCCChHHhhccccc----eeecCCCChhHHHHhhhh
Q 036267 96 GVAADLHVVGLATRNPERLLLDAKAS----FIIKDYEDPKLWAALEEL 139 (145)
Q Consensus 96 a~~~G~~~i~v~~g~~~~~~~~~~~~----~~~~~l~e~~~~~~~~~~ 139 (145)
.+.+|. ++..++..+++... ++ ++.++-.+-.....++.+
T Consensus 191 l~~~~~---~iav~na~~~~k~~-a~~~~~~v~~~~~~~Gv~~~i~~~ 234 (236)
T TIGR02471 191 LRGLTL---GVVVGNHDPELEGL-RHQQRIYFANNPHAFGILEGINHY 234 (236)
T ss_pred HcCCCc---EEEEcCCcHHHHHh-hcCCcEEEcCCCChhHHHHHHHhh
Confidence 999883 33445444444433 44 666665555566666554
No 157
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.30 E-value=1.3e-05 Score=56.17 Aligned_cols=96 Identities=10% Similarity=-0.005 Sum_probs=66.5
Q ss_pred CcccCCHHHHHH-HHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecC-cc-cCCC---C---ChHHHHHHHHHc
Q 036267 6 LKALNGLDNVKK-WVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGD-EC-ERAK---P---FPDPYLKAIEIL 76 (145)
Q Consensus 6 ~~~~~g~~~~l~-~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~-~~-~~~k---p---~~~~~~~~~~~~ 76 (145)
..++||+.+.|+ .++++|++++|+|+++...++.+.+..++..- +.+++.+ +. ..++ + -++-..++.+.+
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~-~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~ 171 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHR-LNLIASQIERGNGGWVLPLRCLGHEKVAQLEQKI 171 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhcccccc-CcEEEEEeEEeCCceEcCccCCChHHHHHHHHHh
Confidence 468999999996 78889999999999999999999987655322 2222222 11 0011 0 122233444445
Q ss_pred CCCCCcEEEEecCHHhHHHHHhcCCE
Q 036267 77 NVSKDHTFVFEDSVSGIKAGVAADLH 102 (145)
Q Consensus 77 ~~~~~~~~~iGD~~~Di~~a~~~G~~ 102 (145)
+.+...+.+-|||.+|+....-+|-+
T Consensus 172 ~~~~~~~~aYsDS~~D~pmL~~a~~~ 197 (210)
T TIGR01545 172 GSPLKLYSGYSDSKQDNPLLAFCEHR 197 (210)
T ss_pred CCChhheEEecCCcccHHHHHhCCCc
Confidence 65667789999999999999988854
No 158
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.30 E-value=1e-05 Score=57.17 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=62.3
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCCChHH---HHHHHHHcCCcCccceeEecCcccCCCCChHHHHH-HHHHcCC
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNSPRAN---AELMITKLGLSGFFEAIIIGDECERAKPFPDPYLK-AIEILNV 78 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~-~~~~~~~ 78 (145)
..+.++.|++.++++.++++|++++++|+.+... ....|...|+..+ +.++-.......++. ..|.. ..+++--
T Consensus 116 ~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~-~~LiLR~~~d~~~~~-~~yKs~~R~~l~~ 193 (229)
T TIGR01675 116 KGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW-KHLILRGLEDSNKTV-VTYKSEVRKSLME 193 (229)
T ss_pred cCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc-CeeeecCCCCCCchH-hHHHHHHHHHHHh
Confidence 4567889999999999999999999999998655 6677778887765 555544311122221 11111 1112211
Q ss_pred CCCc-EEEEecCHHhHHHHHhcCCEEE
Q 036267 79 SKDH-TFVFEDSVSGIKAGVAADLHVV 104 (145)
Q Consensus 79 ~~~~-~~~iGD~~~Di~~a~~~G~~~i 104 (145)
+.-+ +..|||.++|+... .+|.++.
T Consensus 194 ~GYrIv~~iGDq~sDl~G~-~~~~RtF 219 (229)
T TIGR01675 194 EGYRIWGNIGDQWSDLLGS-PPGRRTF 219 (229)
T ss_pred CCceEEEEECCChHHhcCC-CccCcee
Confidence 2233 45899999999653 3343333
No 159
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.23 E-value=1.6e-05 Score=64.99 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=68.1
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEE
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
-++.|++..+++.|++.|++++++|+.....++...++.| ++.++.. -+ |+.-....+++.-....+.|
T Consensus 722 D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VG----i~~V~ae-----v~--P~~K~~~Ik~lq~~~~~VaM 790 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVG----IDNVYAE-----VL--PEQKAEKIKEIQKNGGPVAM 790 (951)
T ss_pred cccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhC----cceEEec-----cC--chhhHHHHHHHHhcCCcEEE
Confidence 4678999999999999999999999999999999999998 4555542 12 22333344444444477999
Q ss_pred EecCHHhHHHHHhcCCEEEEEcCC
Q 036267 86 FEDSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 86 iGD~~~Di~~a~~~G~~~i~v~~g 109 (145)
|||+.||-.+-..+. ++++-+
T Consensus 791 VGDGINDaPALA~Ad---VGIaig 811 (951)
T KOG0207|consen 791 VGDGINDAPALAQAD---VGIAIG 811 (951)
T ss_pred EeCCCCccHHHHhhc---cceeec
Confidence 999999988877776 444444
No 160
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.18 E-value=5.3e-06 Score=59.28 Aligned_cols=68 Identities=12% Similarity=0.002 Sum_probs=54.9
Q ss_pred hHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhc-------CCEEEEEcCCCChHHhhccccceeecCCCChhHHHHhhh
Q 036267 66 PDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAA-------DLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAALEE 138 (145)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~-------G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~~~~ 138 (145)
...+..++++++.++.+++||||+.+|+.+++.+ |..++.|.+|. ....+++++++..+ +..+++.
T Consensus 169 g~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g~-----~~~~A~~~~~~~~~--v~~~L~~ 241 (244)
T TIGR00685 169 GEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSGS-----KKTVAKFHLTGPQQ--VLEFLGL 241 (244)
T ss_pred HHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecCC-----cCCCceEeCCCHHH--HHHHHHH
Confidence 4889999999999999999999999999999988 66777776442 23458999999998 4566665
Q ss_pred hc
Q 036267 139 LD 140 (145)
Q Consensus 139 ~~ 140 (145)
+.
T Consensus 242 l~ 243 (244)
T TIGR00685 242 LV 243 (244)
T ss_pred Hh
Confidence 53
No 161
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=98.11 E-value=3.4e-05 Score=65.53 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=39.4
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS 47 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 47 (145)
-++.|++.++++.|+++|+++.++|+.....+..+.+.+|+-
T Consensus 655 d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii 696 (1054)
T TIGR01657 655 NPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIV 696 (1054)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 368999999999999999999999999999999999999984
No 162
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=98.10 E-value=1.4e-05 Score=67.84 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=78.5
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccce---------------------------------
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEA--------------------------------- 52 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~--------------------------------- 52 (145)
-++.||+.++++.|+++|+++.++|+...+.+..+...+|+-..-..
T Consensus 630 D~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 709 (1057)
T TIGR01652 630 DKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNL 709 (1057)
T ss_pred hhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 36889999999999999999999999999999999888876432111
Q ss_pred --------eEecCcc----------------------cCCCCChHHHHHHHHHcCCC-CCcEEEEecCHHhHHHHHhcCC
Q 036267 53 --------IIIGDEC----------------------ERAKPFPDPYLKAIEILNVS-KDHTFVFEDSVSGIKAGVAADL 101 (145)
Q Consensus 53 --------i~~~~~~----------------------~~~kp~~~~~~~~~~~~~~~-~~~~~~iGD~~~Di~~a~~~G~ 101 (145)
++.++.. -..+-.|..-..+++.+.-. ...+++|||+.||+.+-+.|.+
T Consensus 710 ~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~AdV 789 (1057)
T TIGR01652 710 GDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEADV 789 (1057)
T ss_pred ccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhcCe
Confidence 2222110 01111222223333333332 5679999999999999999984
Q ss_pred EEEEEcCCCChHHhhccccceeecCCCChh
Q 036267 102 HVVGLATRNPERLLLDAKASFIIKDYEDPK 131 (145)
Q Consensus 102 ~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~ 131 (145)
.. ++........ ...+++++.++.-+.
T Consensus 790 GI-gi~g~eg~qA--~~aaD~~i~~F~~L~ 816 (1057)
T TIGR01652 790 GV-GISGKEGMQA--VMASDFAIGQFRFLT 816 (1057)
T ss_pred ee-EecChHHHHH--HHhhhhhhhhHHHHH
Confidence 43 3322111112 224788887766543
No 163
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.08 E-value=5.9e-05 Score=54.97 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=61.0
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCC---hHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSP---RANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
+++||+.++|++|+++|++++++||++ +......++.+|+....+.++++.. .....+++......++
T Consensus 18 ~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~~---------~~~~~l~~~~~~~~~v 88 (279)
T TIGR01452 18 RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSAL---------CAARLLRQPPDAPKAV 88 (279)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHHH---------HHHHHHHhhCcCCCEE
Confidence 589999999999999999999999965 4455567788888655556654332 3444555544445679
Q ss_pred EEEecCHHhHHHHHhcCCEEE
Q 036267 84 FVFEDSVSGIKAGVAADLHVV 104 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i 104 (145)
+++|+.. ..+..+..|+..+
T Consensus 89 ~~iG~~~-~~~~l~~~g~~~~ 108 (279)
T TIGR01452 89 YVIGEEG-LRAELDAAGIRLA 108 (279)
T ss_pred EEEcCHH-HHHHHHHCCCEEe
Confidence 9999753 3344456676643
No 164
>PLN02887 hydrolase family protein
Probab=98.07 E-value=1.1e-05 Score=64.29 Aligned_cols=70 Identities=19% Similarity=0.124 Sum_probs=56.8
Q ss_pred hHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhHHHHhhhh
Q 036267 66 PDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAALEEL 139 (145)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~ 139 (145)
...+..+++.+|+++++++.|||+.||+++.+.+| ++|+.++..+.... .++++..+-.+-.+...++.+
T Consensus 509 G~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG---~gVAMgNA~eeVK~-~Ad~VT~sNdEDGVA~aLek~ 578 (580)
T PLN02887 509 GNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLAS---LGVALSNGAEKTKA-VADVIGVSNDEDGVADAIYRY 578 (580)
T ss_pred HHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCC---CEEEeCCCCHHHHH-hCCEEeCCCCcCHHHHHHHHh
Confidence 45677888999999999999999999999999999 56677765555554 489988888887777777654
No 165
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.06 E-value=0.00012 Score=53.08 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhc---CCEEEEEcCCCChHHhhccccceeecCCCChhHHHHhhhhc
Q 036267 67 DPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAA---DLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAALEELD 140 (145)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~---G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~ 140 (145)
..+.++++.+++..+++++|||+.+|+.+-+.+ +..++.|..+. ..+.+.+++..++ +.+++.+.
T Consensus 177 ~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~-------~~A~~~l~~~~~v--~~~L~~l~ 244 (266)
T PRK10187 177 EAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA-------TQASWRLAGVPDV--WSWLEMIT 244 (266)
T ss_pred HHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC-------CcCeEeCCCHHHH--HHHHHHHH
Confidence 445667777888889999999999999998876 33445553221 2378888988884 55555554
No 166
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=98.01 E-value=5.3e-05 Score=59.50 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=67.1
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEE
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
-++.|++.++++.|++.|+++.++|+.....+..+-+.+|+ + ..-.|+....+++.+.-....+.|
T Consensus 346 d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi-------~-------~~~~p~~K~~~v~~l~~~g~~v~~ 411 (499)
T TIGR01494 346 DPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI-------F-------ARVTPEEKAALVEALQKKGRVVAM 411 (499)
T ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc-------e-------eccCHHHHHHHHHHHHHCCCEEEE
Confidence 46899999999999999999999999999999999999886 1 112345555566655444477999
Q ss_pred EecCHHhHHHHHhcCCE
Q 036267 86 FEDSVSGIKAGVAADLH 102 (145)
Q Consensus 86 iGD~~~Di~~a~~~G~~ 102 (145)
+||+.||..+.+.+++.
T Consensus 412 vGDg~nD~~al~~Advg 428 (499)
T TIGR01494 412 TGDGVNDAPALKKADVG 428 (499)
T ss_pred ECCChhhHHHHHhCCCc
Confidence 99999999999999843
No 167
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=97.98 E-value=1.4e-05 Score=59.21 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=74.8
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHc---CCcCccceeEecCcc-----cCCCCC---------------
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKL---GLSGFFEAIIIGDEC-----ERAKPF--------------- 65 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~---~l~~~f~~i~~~~~~-----~~~kp~--------------- 65 (145)
-|.+..+|++|+++|.+++++||++..++..-+..+ .|.++||.|+.-... ...+|.
T Consensus 242 ~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wdkv 321 (510)
T KOG2470|consen 242 NPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWDKV 321 (510)
T ss_pred cHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhhhhh
Confidence 356788999999999999999999998888776654 588889988765321 111121
Q ss_pred ----------hHHHHHHHHHcCCCCCcEEEEecCH-HhHHHHH-hcCCEEEEEcC
Q 036267 66 ----------PDPYLKAIEILNVSKDHTFVFEDSV-SGIKAGV-AADLHVVGLAT 108 (145)
Q Consensus 66 ----------~~~~~~~~~~~~~~~~~~~~iGD~~-~Di~~a~-~~G~~~i~v~~ 108 (145)
...+...++--|+...+++|+||.+ +|+.-.- +.||.+-+|-.
T Consensus 322 ~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~ 376 (510)
T KOG2470|consen 322 DKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIP 376 (510)
T ss_pred hhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchH
Confidence 1223556666688889999999999 6887766 88999888854
No 168
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=97.97 E-value=1e-05 Score=54.00 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=64.0
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCC-cCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGL-SGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l-~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
.+.++||+.+||+.+.+. +.++|.|.+.+.++..+++.+.- ..+|+.++..+++...+.. +.+-+..++.+.+++
T Consensus 34 ~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~~~~~~~~~~r~~~~~~~~~---~~KdL~~l~~~~~~v 109 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDPNGKLFSRRLYRDDCTFDKGS---YIKDLSKLGRDLDNV 109 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTTTSSEEEEEEGGGSEEETTE---EE--GGGSSS-GGGE
T ss_pred eEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhhhccccccccccccccccccc---cccchHHHhhccccE
Confidence 466899999999999665 99999999999999999999876 5678988888765322211 114455567778999
Q ss_pred EEEecCHHhHHHHHhcC
Q 036267 84 FVFEDSVSGIKAGVAAD 100 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G 100 (145)
++|.|+..-...-..++
T Consensus 110 vivDD~~~~~~~~~~N~ 126 (159)
T PF03031_consen 110 VIVDDSPRKWALQPDNG 126 (159)
T ss_dssp EEEES-GGGGTTSGGGE
T ss_pred EEEeCCHHHeeccCCce
Confidence 99999997443334445
No 169
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.96 E-value=0.00025 Score=50.20 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=37.9
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCc
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGF 49 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~ 49 (145)
...++..++|++++++|++++++|+.+...+...++.+|+..+
T Consensus 15 ~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~~ 57 (225)
T TIGR02461 15 YEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEPP 57 (225)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCc
Confidence 3567899999999999999999999999999999998887554
No 170
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=97.91 E-value=9.3e-05 Score=53.16 Aligned_cols=75 Identities=13% Similarity=0.041 Sum_probs=54.6
Q ss_pred CCCChHHHHHHHHHcCCC--CCcEEEEecCHHhHHHHHhcCCEEEEEcCCCCh---HHhhcc--ccceeecCCCChhHHH
Q 036267 62 AKPFPDPYLKAIEILNVS--KDHTFVFEDSVSGIKAGVAADLHVVGLATRNPE---RLLLDA--KASFIIKDYEDPKLWA 134 (145)
Q Consensus 62 ~kp~~~~~~~~~~~~~~~--~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~---~~~~~~--~~~~~~~~l~e~~~~~ 134 (145)
.-.+...+..+++.++++ .+++++|||+.||+.+.+.+| .+|+.++.. +.+... .++++..+-.+-.+..
T Consensus 174 ~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag---~~vam~Na~~~~~~lk~~~~a~~~vt~~~~~dGva~ 250 (256)
T TIGR01486 174 GSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVD---LAVVVPGPNGPNVSLKPGDPGSFLLTPAPGPEGWRE 250 (256)
T ss_pred CCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCC---EEEEeCCCCCCccccCccCCCcEEEcCCCCcHHHHH
Confidence 445577889999999998 999999999999999999999 555555433 233322 1347777777766666
Q ss_pred Hhhhh
Q 036267 135 ALEEL 139 (145)
Q Consensus 135 ~~~~~ 139 (145)
.++.+
T Consensus 251 ~l~~~ 255 (256)
T TIGR01486 251 ALEHL 255 (256)
T ss_pred HHHHh
Confidence 66543
No 171
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.90 E-value=4e-05 Score=55.55 Aligned_cols=73 Identities=10% Similarity=-0.003 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHcCC---CCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCCh-H--Hh--hccccceeecCCCChhHHHHh
Q 036267 65 FPDPYLKAIEILNV---SKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPE-R--LL--LDAKASFIIKDYEDPKLWAAL 136 (145)
Q Consensus 65 ~~~~~~~~~~~~~~---~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~-~--~~--~~~~~~~~~~~l~e~~~~~~~ 136 (145)
+...++.+++.+|+ ++++++.|||+.||+.+-+.+| ++|+.+... + .+ ....++++.....+-.....+
T Consensus 188 Kg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag---~gvAM~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~l 264 (271)
T PRK03669 188 KDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMD---YAVVVKGLNREGVHLQDDDPARVYRTQREGPEGWREGL 264 (271)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCC---EEEEecCCCCCCcccccccCCceEeccCCCcHHHHHHH
Confidence 34567888889999 9999999999999999999999 555555322 1 22 223578888888877777777
Q ss_pred hhhc
Q 036267 137 EELD 140 (145)
Q Consensus 137 ~~~~ 140 (145)
+.+.
T Consensus 265 ~~~~ 268 (271)
T PRK03669 265 DHFF 268 (271)
T ss_pred HHHH
Confidence 7653
No 172
>PLN03190 aminophospholipid translocase; Provisional
Probab=97.85 E-value=6e-05 Score=64.58 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=35.6
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCC
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGL 46 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l 46 (145)
-++.+|+.++++.|+++|+++.++|+.....+..+-..+++
T Consensus 725 D~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~L 765 (1178)
T PLN03190 725 DKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKL 765 (1178)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCC
Confidence 36899999999999999999999999988888777665554
No 173
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.82 E-value=0.00011 Score=56.42 Aligned_cols=102 Identities=8% Similarity=-0.020 Sum_probs=87.5
Q ss_pred cCcccCC--HHHHHHHHHhCCCcEEEEeCC--ChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCC
Q 036267 5 QLKALNG--LDNVKKWVEGCGLKRAAVTNS--PRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSK 80 (145)
Q Consensus 5 ~~~~~~g--~~~~l~~l~~~g~~~~i~s~~--~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~ 80 (145)
+..++|. ..++.+.+...|.+++++|.- +...++.+|..+|.+-+--.++.+.+....|-....+..+++.-++++
T Consensus 95 KevLypn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~ 174 (635)
T COG5610 95 KEVLYPNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDP 174 (635)
T ss_pred eeEeeccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHHhhcCCCh
Confidence 3445554 457889999999999999975 678899999999987666678888888888999999999999999999
Q ss_pred CcEEEEecCH-HhHHHHHhcCCEEEEE
Q 036267 81 DHTFVFEDSV-SGIKAGVAADLHVVGL 106 (145)
Q Consensus 81 ~~~~~iGD~~-~Di~~a~~~G~~~i~v 106 (145)
.+.+++||+. .|+..+++.|+.|...
T Consensus 175 ~~w~H~GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 175 KKWIHCGDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred hheEEecCchhhhhcCccccchhHHHH
Confidence 9999999999 6999999999887665
No 174
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=97.79 E-value=0.00011 Score=50.59 Aligned_cols=108 Identities=11% Similarity=0.124 Sum_probs=65.4
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChH-------HHHHHHHHc-CCcCccceeEecCcccCCCCChHHHHHHHHH
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRA-------NAELMITKL-GLSGFFEAIIIGDECERAKPFPDPYLKAIEI 75 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~-------~~~~~l~~~-~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~ 75 (145)
.+.+++||+.++|++|.+.|..++++|..+.. ....+++++ +-..+-..+++ .+ | . .
T Consensus 70 ~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~-~~----K---~-------~ 134 (191)
T PF06941_consen 70 SNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFT-GD----K---T-------L 134 (191)
T ss_dssp TT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEE-SS----G---G-------G
T ss_pred cCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEe-cC----C---C-------e
Confidence 35789999999999999999777777765432 444566654 31111133333 22 1 0 1
Q ss_pred cCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhHHH
Q 036267 76 LNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWA 134 (145)
Q Consensus 76 ~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~ 134 (145)
++.+ ++|.|++..+..+.+.|++++.....+++... .-.-+.+..|+....
T Consensus 135 v~~D----vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~----~~~Rv~~W~ei~~~i 185 (191)
T PF06941_consen 135 VGGD----VLIDDRPHNLEQFANAGIPVILFDQPYNRDES----NFPRVNNWEEIEDLI 185 (191)
T ss_dssp C--S----EEEESSSHHHSS-SSESSEEEEE--GGGTT------TSEEE-STTSHHHHH
T ss_pred Eecc----EEecCChHHHHhccCCCceEEEEcCCCCCCCC----CCccCCCHHHHHHHH
Confidence 1222 89999999999999999999999887766543 456688899964333
No 175
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.75 E-value=0.00079 Score=45.04 Aligned_cols=94 Identities=12% Similarity=0.145 Sum_probs=61.4
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHH---HHHHH-----cCCcCccceeEecCcc---------cCCCC---Ch
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAE---LMITK-----LGLSGFFEAIIIGDEC---------ERAKP---FP 66 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~---~~l~~-----~~l~~~f~~i~~~~~~---------~~~kp---~~ 66 (145)
...|++.+++++++++|++++++|+.+...+. .+++. .++. ...++.+... ...+| +.
T Consensus 27 ~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp--~g~li~~~g~~~~~~~~e~i~~~~~~~K~ 104 (157)
T smart00775 27 WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLP--HGPVLLSPDRLFAALHREVISKKPEVFKI 104 (157)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCC--CceEEEcCCcchhhhhcccccCCHHHHHH
Confidence 56899999999999999999999999877664 66666 2232 1244444331 12333 22
Q ss_pred HHHHHHHHHcCCCCCcE-EEEecCHHhHHHHHhcCCE
Q 036267 67 DPYLKAIEILNVSKDHT-FVFEDSVSGIKAGVAADLH 102 (145)
Q Consensus 67 ~~~~~~~~~~~~~~~~~-~~iGD~~~Di~~a~~~G~~ 102 (145)
..+..+.+.+.-..-.. +.+||+.+|+++=.++|+.
T Consensus 105 ~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 105 ACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 33444444333222233 4588889999999999985
No 176
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.72 E-value=4.1e-05 Score=54.35 Aligned_cols=93 Identities=18% Similarity=0.207 Sum_probs=59.0
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCCh---HHHHHHHHHcCCcCccceeEecCcccCC---CCChHHHHHHHHHcC
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPR---ANAELMITKLGLSGFFEAIIIGDECERA---KPFPDPYLKAIEILN 77 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~---~~~~~~l~~~~l~~~f~~i~~~~~~~~~---kp~~~~~~~~~~~~~ 77 (145)
...+++||+.+|++.++++|+.|+++||.+. .....-|...|...+-..++-....... ......-+..+++-|
T Consensus 112 ~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~G 191 (229)
T PF03767_consen 112 GKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKG 191 (229)
T ss_dssp TGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTT
T ss_pred ccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHcC
Confidence 3447899999999999999999999999764 4455567777866543334333322111 122233333333333
Q ss_pred CCCCcEEEEecCHHhHHHHHh
Q 036267 78 VSKDHTFVFEDSVSGIKAGVA 98 (145)
Q Consensus 78 ~~~~~~~~iGD~~~Di~~a~~ 98 (145)
. .=+.+|||.++|+..++.
T Consensus 192 y--~Ii~~iGD~~~D~~~~~~ 210 (229)
T PF03767_consen 192 Y--RIIANIGDQLSDFSGAKT 210 (229)
T ss_dssp E--EEEEEEESSGGGCHCTHH
T ss_pred C--cEEEEeCCCHHHhhcccc
Confidence 2 227799999999998443
No 177
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.71 E-value=0.00047 Score=49.89 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=57.4
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCCCh---HHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHH-HHHcCC
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNSPR---ANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKA-IEILNV 78 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~---~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~-~~~~~~ 78 (145)
....++.|++.++.+.+++.|++++++|+.+. .....-|...|+..+ +.++-.......+...-.++.. .+++--
T Consensus 141 ~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~-~~LiLR~~~D~~~~~av~yKs~~R~~li~ 219 (275)
T TIGR01680 141 KGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTW-EKLILKDPQDNSAENAVEYKTAARAKLIQ 219 (275)
T ss_pred cccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCc-ceeeecCCCCCccchhHHHHHHHHHHHHH
Confidence 45678899999999999999999999999975 334455666777654 4444433211112111122211 111111
Q ss_pred CCCc-EEEEecCHHhHHHHH
Q 036267 79 SKDH-TFVFEDSVSGIKAGV 97 (145)
Q Consensus 79 ~~~~-~~~iGD~~~Di~~a~ 97 (145)
+.-+ +..|||.++|+....
T Consensus 220 eGYrIv~~iGDq~sDl~G~~ 239 (275)
T TIGR01680 220 EGYNIVGIIGDQWNDLKGEH 239 (275)
T ss_pred cCceEEEEECCCHHhccCCC
Confidence 2233 458999999996544
No 178
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.65 E-value=9.4e-05 Score=51.19 Aligned_cols=43 Identities=21% Similarity=0.132 Sum_probs=38.3
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEE
Q 036267 62 AKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVV 104 (145)
Q Consensus 62 ~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i 104 (145)
+.+++..++.++++++++++++++|||+.+|+.+++.+|+..+
T Consensus 161 ~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~va 203 (204)
T TIGR01484 161 GVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVA 203 (204)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceE
Confidence 4567889999999999999999999999999999999997643
No 179
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=97.64 E-value=0.00089 Score=48.03 Aligned_cols=44 Identities=14% Similarity=0.057 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCC
Q 036267 65 FPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g 109 (145)
+......+++++++++++++++|||.||+.+- ..+...|.|...
T Consensus 166 K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~Na 209 (247)
T PF05116_consen 166 KGAALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGNA 209 (247)
T ss_dssp HHHHHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TTS
T ss_pred HHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcCC
Confidence 34667889999999999999999999999887 777788888654
No 180
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=97.55 E-value=0.001 Score=47.25 Aligned_cols=81 Identities=14% Similarity=0.017 Sum_probs=62.7
Q ss_pred EEEEeCCChHHHHHHHHHcCCcCcc--ceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEE
Q 036267 26 RAAVTNSPRANAELMITKLGLSGFF--EAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHV 103 (145)
Q Consensus 26 ~~i~s~~~~~~~~~~l~~~~l~~~f--~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~ 103 (145)
=+++|++...-.-...--++|+.+| +.|+++...+ +.+.|+.+.+++|-+.-.-++|||+..--.+|+..++++
T Consensus 178 NvLVTs~qLVPaLaKcLLy~L~~~f~ieNIYSa~kvG----K~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPF 253 (274)
T TIGR01658 178 NVLVTSGQLIPSLAKCLLFRLDTIFRIENVYSSIKVG----KLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWPF 253 (274)
T ss_pred EEEEEcCccHHHHHHHHHhccCCccccccccchhhcc----hHHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCCe
Confidence 4556666544333333445788888 6788776654 388999999999987888999999999999999999999
Q ss_pred EEEcCCC
Q 036267 104 VGLATRN 110 (145)
Q Consensus 104 i~v~~g~ 110 (145)
+-|....
T Consensus 254 w~I~~h~ 260 (274)
T TIGR01658 254 VKIDLHP 260 (274)
T ss_pred EEeecCC
Confidence 9997654
No 181
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=97.54 E-value=0.00086 Score=45.51 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=61.1
Q ss_pred HHHHHHHHHhCCCcEEEEeCCChHHHH----HHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 036267 12 LDNVKKWVEGCGLKRAAVTNSPRANAE----LMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFE 87 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~~~~~~~----~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iG 87 (145)
++.++..=.++|=.++.+|+.+....+ .+.+.+.+..-...+|.++. .||....-...+++.++ -++-|
T Consensus 119 A~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk---~k~~qy~Kt~~i~~~~~----~IhYG 191 (237)
T COG3700 119 ARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDK---PKPGQYTKTQWIQDKNI----RIHYG 191 (237)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCC---CCcccccccHHHHhcCc----eEEec
Confidence 456666667889999999998764433 33344556544455554332 23333333344444443 68999
Q ss_pred cCHHhHHHHHhcCCEEEEEcCCC
Q 036267 88 DSVSGIKAGVAADLHVVGLATRN 110 (145)
Q Consensus 88 D~~~Di~~a~~~G~~~i~v~~g~ 110 (145)
||.+||.+|+.+|++-|.+.+..
T Consensus 192 DSD~Di~AAkeaG~RgIRilRAa 214 (237)
T COG3700 192 DSDNDITAAKEAGARGIRILRAA 214 (237)
T ss_pred CCchhhhHHHhcCccceeEEecC
Confidence 99999999999999999887653
No 182
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.51 E-value=0.00099 Score=47.26 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=59.5
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCCChHH----HHHHHHHcCCcCcc-ceeEecCcccCCCCChHHHHHHHHHcC
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNSPRAN----AELMITKLGLSGFF-EAIIIGDECERAKPFPDPYLKAIEILN 77 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~----~~~~l~~~~l~~~f-~~i~~~~~~~~~kp~~~~~~~~~~~~~ 77 (145)
....++.||+.||++...++|..|+.+||...+. .-.-|.+.|+.... +.++-- ...|++..-+..+.+
T Consensus 118 a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llk---k~~k~Ke~R~~~v~k--- 191 (274)
T COG2503 118 AKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLK---KDKKSKEVRRQAVEK--- 191 (274)
T ss_pred hcccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEe---eCCCcHHHHHHHHhh---
Confidence 3567899999999999999999999999997765 23445566776443 222221 233444444444433
Q ss_pred CCCCcEEEEecCHHhHHHHHh
Q 036267 78 VSKDHTFVFEDSVSGIKAGVA 98 (145)
Q Consensus 78 ~~~~~~~~iGD~~~Di~~a~~ 98 (145)
.-.-++.|||++.|......
T Consensus 192 -~~~iVm~vGDNl~DF~d~~~ 211 (274)
T COG2503 192 -DYKIVMLVGDNLDDFGDNAY 211 (274)
T ss_pred -ccceeeEecCchhhhcchhh
Confidence 34558899999988765444
No 183
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00079 Score=55.30 Aligned_cols=116 Identities=16% Similarity=0.073 Sum_probs=74.7
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHH----------------
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPY---------------- 69 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~---------------- 69 (145)
-+++||+.++++.++++|+.+-.+|+..-..++.+...+|+...-+....-+....++-..+-.
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~ 725 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPN 725 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCc
Confidence 4689999999999999999999999999999999999999765443111112111111111111
Q ss_pred --HHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceee
Q 036267 70 --LKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFII 124 (145)
Q Consensus 70 --~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~ 124 (145)
+..++-+.-..+=+.+-||+.||-.+-+.+. ++.+.|..-.+......+.++
T Consensus 726 DK~lLVk~L~~~g~VVAVTGDGTNDaPALkeAD---VGlAMGIaGTeVAKEaSDIIi 779 (1034)
T KOG0204|consen 726 DKHLLVKGLIKQGEVVAVTGDGTNDAPALKEAD---VGLAMGIAGTEVAKEASDIII 779 (1034)
T ss_pred hHHHHHHHHHhcCcEEEEecCCCCCchhhhhcc---cchhccccchhhhhhhCCeEE
Confidence 2222222222234558899999999999999 667777443333333355543
No 184
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.37 E-value=0.0054 Score=40.63 Aligned_cols=98 Identities=15% Similarity=0.129 Sum_probs=63.8
Q ss_pred cccCcccCCHHHHHHHHHhC-C-CcEEEEeCCC--------hHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHH
Q 036267 3 SEQLKALNGLDNVKKWVEGC-G-LKRAAVTNSP--------RANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKA 72 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~-g-~~~~i~s~~~--------~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~ 72 (145)
+.+....|....-+++++.. | ..++++||.. ...++.+-+..|+. ++ .. ...|| ......
T Consensus 57 P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIp-----Vl-RH--s~kKP--~ct~E~ 126 (190)
T KOG2961|consen 57 PYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIP-----VL-RH--SVKKP--ACTAEE 126 (190)
T ss_pred CcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCc-----eE-ee--cccCC--CccHHH
Confidence 44556677777778888752 2 5788888863 13333333445543 11 11 12343 333333
Q ss_pred HHHc-C----CCCCcEEEEecCH-HhHHHHHhcCCEEEEEcCCC
Q 036267 73 IEIL-N----VSKDHTFVFEDSV-SGIKAGVAADLHVVGLATRN 110 (145)
Q Consensus 73 ~~~~-~----~~~~~~~~iGD~~-~Di~~a~~~G~~~i~v~~g~ 110 (145)
.+.+ | ..+++++||||.+ .||..|...|...+|+..|.
T Consensus 127 ~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv 170 (190)
T KOG2961|consen 127 VEYHFGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGV 170 (190)
T ss_pred HHHHhCCcccCChhHeEEEccchhhhHhhhhhccceeEEecccc
Confidence 3332 3 5889999999999 79999999999999998884
No 185
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=97.34 E-value=0.00051 Score=49.00 Aligned_cols=114 Identities=11% Similarity=0.163 Sum_probs=63.7
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEec------Ccc--cCCCCChHHHH---H
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIG------DEC--ERAKPFPDPYL---K 71 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~------~~~--~~~kp~~~~~~---~ 71 (145)
...+.+++|+.++++.|.++++|+.|+|.+--+.++..|++.+.-..--.|++. ++. +...|--..+. .
T Consensus 86 ~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~ 165 (246)
T PF05822_consen 86 ESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNES 165 (246)
T ss_dssp CS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHH
T ss_pred hcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcc
Confidence 456889999999999999999999999999999999999987643221223332 111 11122111111 1
Q ss_pred HH---HHc-CC-CCCcEEEEecCHHhHHHHHhc-CC---EEEEEcCCCChHHhh
Q 036267 72 AI---EIL-NV-SKDHTFVFEDSVSGIKAGVAA-DL---HVVGLATRNPERLLL 116 (145)
Q Consensus 72 ~~---~~~-~~-~~~~~~~iGD~~~Di~~a~~~-G~---~~i~v~~g~~~~~~~ 116 (145)
++ ..+ .+ .+.+++..||++.|+.+|... .. -.|+.......+.+.
T Consensus 166 ~l~~~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~ 219 (246)
T PF05822_consen 166 ALEDSPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLE 219 (246)
T ss_dssp HHTTHHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHH
T ss_pred cccCchHHHHhccCCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHH
Confidence 11 111 22 567899999999999998766 22 266666665444343
No 186
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.0016 Score=50.94 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=67.8
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFE 87 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iG 87 (145)
+-||.+|-+++|++.|++.+.+|+..+-.+..+-...|+++|+-. .+ |+-.....++.+-+..=+.|.|
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfiAe---------at--PEdK~~~I~~eQ~~grlVAMtG 516 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIAE---------AT--PEDKLALIRQEQAEGRLVAMTG 516 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhhhc---------CC--hHHHHHHHHHHHhcCcEEEEcC
Confidence 568999999999999999999999999999999999999875532 22 4455556666666667788999
Q ss_pred cCHHhHHHHHhcCC
Q 036267 88 DSVSGIKAGVAADL 101 (145)
Q Consensus 88 D~~~Di~~a~~~G~ 101 (145)
|+.||..+-.++.+
T Consensus 517 DGTNDAPALAqAdV 530 (681)
T COG2216 517 DGTNDAPALAQADV 530 (681)
T ss_pred CCCCcchhhhhcch
Confidence 99999999888883
No 187
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.04 E-value=0.0062 Score=50.20 Aligned_cols=57 Identities=11% Similarity=0.090 Sum_probs=40.7
Q ss_pred CCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCChhHHHHhhhhc
Q 036267 77 NVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAALEELD 140 (145)
Q Consensus 77 ~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~ 140 (145)
+.+++.++++||+.||+.+.+.++...+.|..|.. ...+.+.+++..| +..+++.+.
T Consensus 668 ~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~-----~s~A~~~l~~~~e--V~~~L~~l~ 724 (726)
T PRK14501 668 AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGPG-----ESRARYRLPSQRE--VRELLRRLL 724 (726)
T ss_pred cCCCCEEEEECCCCChHHHHHhcccCceEEEECCC-----CCcceEeCCCHHH--HHHHHHHHh
Confidence 45678999999999999999987533345554542 2358899998877 566666543
No 188
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=97.01 E-value=0.0012 Score=47.64 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=39.9
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCChH---HHHHHHHHcCCcCccceeEec
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPRA---NAELMITKLGLSGFFEAIIIG 56 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~~---~~~~~l~~~~l~~~f~~i~~~ 56 (145)
++|++.++|+.|+++|++++++||++.. .....++.+|++--.+.++++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts 73 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTP 73 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcH
Confidence 8999999999999999999999997644 577778888886444556555
No 189
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=96.90 E-value=0.028 Score=40.54 Aligned_cols=103 Identities=15% Similarity=0.222 Sum_probs=72.1
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHH---HHHcCCc--Cc-c--ceeE--------------ecCc--ccCCC
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPRANAELM---ITKLGLS--GF-F--EAII--------------IGDE--CERAK 63 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~---l~~~~l~--~~-f--~~i~--------------~~~~--~~~~k 63 (145)
+-+.+.++++.|.++|+++..+|.......... |..+|++ .. | +..+ ..+. ...+-
T Consensus 82 ie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~ 161 (252)
T PF11019_consen 82 IESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQ 161 (252)
T ss_pred cchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCC
Confidence 346889999999999999999998876555443 4555654 11 1 0111 0000 01233
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHH----hcCCEEEEEcCCC
Q 036267 64 PFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGV----AADLHVVGLATRN 110 (145)
Q Consensus 64 p~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~----~~G~~~i~v~~g~ 110 (145)
++..++..++.+.|..|++++||+|+...+.... +.|+.++++....
T Consensus 162 ~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt~ 212 (252)
T PF11019_consen 162 DKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYTG 212 (252)
T ss_pred ccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEcc
Confidence 4568899999999999999999999997776544 3689999987764
No 190
>PLN02382 probable sucrose-phosphatase
Probab=96.67 E-value=0.0043 Score=47.83 Aligned_cols=46 Identities=15% Similarity=0.014 Sum_probs=38.9
Q ss_pred CChHHHHHHHHHc---CCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCC
Q 036267 64 PFPDPYLKAIEIL---NVSKDHTFVFEDSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 64 p~~~~~~~~~~~~---~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g 109 (145)
.+...+..+++.+ |+++++++.+||+.||+++-+.+|+..+.+...
T Consensus 175 sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA 223 (413)
T PLN02382 175 GKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNA 223 (413)
T ss_pred CHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCC
Confidence 3567889999999 999999999999999999999999756666443
No 191
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.62 E-value=0.006 Score=44.24 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=40.7
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF 50 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f 50 (145)
-.+.+++.++|+.|+++|++++++|+.+...+...++.+++..++
T Consensus 20 ~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~~~ 64 (273)
T PRK00192 20 TYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLEDPF 64 (273)
T ss_pred CcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCE
Confidence 356788999999999999999999999999999999999987665
No 192
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=96.39 E-value=0.031 Score=38.75 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=59.8
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCc--cceeEecCcc----------c--CCCCChHHHHH
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGF--FEAIIIGDEC----------E--RAKPFPDPYLK 71 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~--f~~i~~~~~~----------~--~~kp~~~~~~~ 71 (145)
+-.+|++.+||+.+.+ .+.++|.|.+....++.++..+++... +...+.-+.. + .-|+ +..
T Consensus 44 ~~kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~~ 118 (195)
T TIGR02245 44 ELMRPYLHEFLTSAYE-DYDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LGV 118 (195)
T ss_pred EEeCCCHHHHHHHHHh-CCEEEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEee----cHH
Confidence 4568999999999998 599999999999999999998775321 1111111111 0 1222 112
Q ss_pred HHHHcC--CCCCcEEEEecCHHhHHHHHhcCCE
Q 036267 72 AIEILN--VSKDHTFVFEDSVSGIKAGVAADLH 102 (145)
Q Consensus 72 ~~~~~~--~~~~~~~~iGD~~~Di~~a~~~G~~ 102 (145)
+-.+++ .+.+++++|.|+..-...=-.+|+.
T Consensus 119 lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~ 151 (195)
T TIGR02245 119 IWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLK 151 (195)
T ss_pred hhhhcccCCCcccEEEEeCCHHHHhcCCCCccc
Confidence 222343 3778999999999655544445643
No 193
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=96.38 E-value=0.047 Score=41.38 Aligned_cols=82 Identities=17% Similarity=0.113 Sum_probs=61.5
Q ss_pred CcEEEEeCCChHHHHHHHHHcCCcCcc--ceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCC
Q 036267 24 LKRAAVTNSPRANAELMITKLGLSGFF--EAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADL 101 (145)
Q Consensus 24 ~~~~i~s~~~~~~~~~~l~~~~l~~~f--~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~ 101 (145)
..-+++|+....-.-..+-.+||...| +.|++..+++ +...|+++.+++|- +-.-++|||+.---.+|++..|
T Consensus 371 cvnVlvTttqLipalaKvLL~gLg~~fpiENIYSa~kiG----KescFerI~~RFg~-K~~yvvIgdG~eee~aAK~ln~ 445 (468)
T KOG3107|consen 371 CVNVLVTTTQLIPALAKVLLYGLGSSFPIENIYSATKIG----KESCFERIQSRFGR-KVVYVVIGDGVEEEQAAKALNM 445 (468)
T ss_pred eeEEEEeccchhHHHHHHHHHhcCCcccchhhhhhhhcc----HHHHHHHHHHHhCC-ceEEEEecCcHHHHHHHHhhCC
Confidence 345667776544444444445677666 7788777665 37899999999997 5667799999999999999999
Q ss_pred EEEEEcCCC
Q 036267 102 HVVGLATRN 110 (145)
Q Consensus 102 ~~i~v~~g~ 110 (145)
++..|....
T Consensus 446 PfwrI~~h~ 454 (468)
T KOG3107|consen 446 PFWRISSHS 454 (468)
T ss_pred ceEeeccCc
Confidence 999996543
No 194
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=96.37 E-value=0.016 Score=46.79 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=46.6
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc-Ccc-ceeEecCcc
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS-GFF-EAIIIGDEC 59 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f-~~i~~~~~~ 59 (145)
-++++|++.+||+++.+. +.+.|+|.+++.++..+++-+.-. .|| +.|++.++-
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~ 254 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDES 254 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCC
Confidence 478999999999999977 999999999999999999987643 556 788888773
No 195
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.35 E-value=0.11 Score=36.94 Aligned_cols=42 Identities=10% Similarity=0.092 Sum_probs=35.2
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCC
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGL 46 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l 46 (145)
...++.||+.+.++.+.++ +.-+|+|.+...++.......|+
T Consensus 80 ~sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~ 121 (315)
T COG4030 80 LSAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGV 121 (315)
T ss_pred hhcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCC
Confidence 3578999999999999987 88888888888888888777765
No 196
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.28 E-value=0.043 Score=42.92 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=74.8
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc----cCCCCChHHHHHHHHHcCCCC
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC----ERAKPFPDPYLKAIEILNVSK 80 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~----~~~kp~~~~~~~~~~~~~~~~ 80 (145)
+-++|....+++..|+.+|+-++|+|-+....++.++.++. +.+.--++. ...-|+.+-++.+++++++..
T Consensus 253 ~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~khp-----~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~ 327 (574)
T COG3882 253 EGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKHP-----DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGL 327 (574)
T ss_pred CchhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhCC-----CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCc
Confidence 44567778999999999999999999988888888888753 223333322 245688899999999999999
Q ss_pred CcEEEEecCHHhHHHHHhcCC
Q 036267 81 DHTFVFEDSVSGIKAGVAADL 101 (145)
Q Consensus 81 ~~~~~iGD~~~Di~~a~~~G~ 101 (145)
+-.+||+|++...+-.++.+-
T Consensus 328 dSmvFiDD~p~ErE~vk~~~~ 348 (574)
T COG3882 328 DSMVFIDDNPAERELVKRELP 348 (574)
T ss_pred cceEEecCCHHHHHHHHhcCc
Confidence 999999999999998888775
No 197
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.0022 Score=52.80 Aligned_cols=112 Identities=19% Similarity=0.143 Sum_probs=71.3
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc---------------cee---------EecCcccCC
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF---------------EAI---------IIGDECERA 62 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f---------------~~i---------~~~~~~~~~ 62 (145)
++++.+-+++..++.+|++++.+|+.+...++.+....|+-.-- +.+ +.+.+. +
T Consensus 590 PPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL--~ 667 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSEL--P 667 (1019)
T ss_pred CCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeeecCCchhhhhhHHhcCCcccccCccccceEEEecccc--c
Confidence 46778889999999999999999999988888888777632211 111 111110 1
Q ss_pred CCChHHHHHHHHHcC------CCC--------------CcEEEEecCHHhHHHHHhcCCEEEEEcCCCChHHhhccccce
Q 036267 63 KPFPDPYLKAIEILN------VSK--------------DHTFVFEDSVSGIKAGVAADLHVVGLATRNPERLLLDAKASF 122 (145)
Q Consensus 63 kp~~~~~~~~~~~~~------~~~--------------~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~ 122 (145)
.-.+..+.++++.+. ..| +-+.+.||+.||-.+-+++. |+|+.|....+.....++.
T Consensus 668 ~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKAD---IGVAMGiaGSDvsKqAADm 744 (1019)
T KOG0203|consen 668 DMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKAD---IGVAMGIAGSDVSKQAADM 744 (1019)
T ss_pred ccCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccc---cceeeccccchHHHhhcce
Confidence 112344555555432 111 23448899999999999999 7777775444433334554
Q ss_pred e
Q 036267 123 I 123 (145)
Q Consensus 123 ~ 123 (145)
+
T Consensus 745 I 745 (1019)
T KOG0203|consen 745 I 745 (1019)
T ss_pred E
Confidence 3
No 198
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=96.02 E-value=0.02 Score=40.04 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=36.4
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS 47 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 47 (145)
..+..+++|+.++++|++++++|+.+...+...++.+++.
T Consensus 17 ~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 17 DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 3445899999999999999999999999999999999986
No 199
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.99 E-value=0.019 Score=42.21 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=40.7
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF 50 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f 50 (145)
.-..++.+.++|++|+++|++++++|+.+...+..+.+.+++..+|
T Consensus 16 ~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p~ 61 (302)
T PRK12702 16 EFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEHPF 61 (302)
T ss_pred CCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeE
Confidence 3356778999999999999999999999999999999999987655
No 200
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=95.97 E-value=0.027 Score=41.03 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=46.7
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecC
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGD 57 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~ 57 (145)
..|.+.+.|.+|++.|-.+++=|.+.++.+..-++.++|..+||.+++..
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~~G 192 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDIIICGG 192 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEEEEeCC
Confidence 46889999999999999999999999999999999999999999998874
No 201
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.023 Score=43.31 Aligned_cols=98 Identities=10% Similarity=0.070 Sum_probs=73.1
Q ss_pred HHHHHHHHHhCCCcEEEEeCCChHHHHHHHHH---cCCcCccceeEecCc---------------cc-------------
Q 036267 12 LDNVKKWVEGCGLKRAAVTNSPRANAELMITK---LGLSGFFEAIIIGDE---------------CE------------- 60 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~---~~l~~~f~~i~~~~~---------------~~------------- 60 (145)
...+|..+++.|.+..+.||....+..-.+.. .+|..||+.++.... ..
T Consensus 203 ~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~p~ 282 (424)
T KOG2469|consen 203 IVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTGPL 282 (424)
T ss_pred cccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccCCcc
Confidence 34488999999999999999987777766654 368899987766521 01
Q ss_pred --CCCCChHHHHHHHHHcCCCCCcEEEEecCH-HhHHH-HHhcCCEEEEEcCC
Q 036267 61 --RAKPFPDPYLKAIEILNVSKDHTFVFEDSV-SGIKA-GVAADLHVVGLATR 109 (145)
Q Consensus 61 --~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~-~Di~~-a~~~G~~~i~v~~g 109 (145)
...+.......+++.++....+++++||+. .|+.- -++.|+.++.|...
T Consensus 283 e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~pe 335 (424)
T KOG2469|consen 283 EQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPE 335 (424)
T ss_pred hhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEehh
Confidence 123344667888888888889999999999 46654 45679999999755
No 202
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=95.78 E-value=0.061 Score=40.10 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=57.1
Q ss_pred CcccCCHHHHHHHHHhC----CCcEEEEeCCC---hHH-HHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcC
Q 036267 6 LKALNGLDNVKKWVEGC----GLKRAAVTNSP---RAN-AELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILN 77 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~----g~~~~i~s~~~---~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~ 77 (145)
-+++|++.++++.|+.+ |+++.++||+. ... +..+.+.+|+.-..+.++.+. ......+++++
T Consensus 15 ~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~---------~~~~~ll~~~~ 85 (321)
T TIGR01456 15 KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH---------SPYKSLVNKYE 85 (321)
T ss_pred ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh---------HHHHHHHHHcC
Confidence 34699999999999998 99999999986 444 444447888753334443321 12344444442
Q ss_pred CCCCcEEEEecCHHhHHHHHhcCCEEE
Q 036267 78 VSKDHTFVFEDSVSGIKAGVAADLHVV 104 (145)
Q Consensus 78 ~~~~~~~~iGD~~~Di~~a~~~G~~~i 104 (145)
..+++||.+- -.+.+...|+..+
T Consensus 86 ---~~v~viG~~~-~~~~l~~~G~~~v 108 (321)
T TIGR01456 86 ---KRILAVGTGS-VRGVAEGYGFQNV 108 (321)
T ss_pred ---CceEEEeChH-HHHHHHHcCCccc
Confidence 2688898764 4566668887655
No 203
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=95.69 E-value=0.029 Score=40.34 Aligned_cols=43 Identities=16% Similarity=0.050 Sum_probs=38.8
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCc
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGF 49 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~ 49 (145)
.+.|..+++|++++++|+.++++|+.+...+...++.+++..+
T Consensus 20 ~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~ 62 (272)
T PRK10530 20 TILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALDTP 62 (272)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCC
Confidence 5678899999999999999999999999999999999887654
No 204
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=95.55 E-value=0.073 Score=40.47 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=64.9
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCCh------------HHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHH
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPR------------ANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEI 75 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~------------~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~ 75 (145)
++|.+..=|..+.+.|+.++|.||+.. .-++.+.+.+++ .|......-.-..+||...|+....+.
T Consensus 105 l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl~v--Pi~~~~A~~~~~yRKP~tGMwe~~~~~ 182 (422)
T KOG2134|consen 105 LFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANLGV--PIQLLAAIIKGKYRKPSTGMWEFLKRL 182 (422)
T ss_pred eccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhcCC--ceEEeeeccCCcccCcchhHHHHHHHH
Confidence 578888889999999999999998742 334444554333 233322222336899999999998877
Q ss_pred cC----CCCCcEEEEec---------------CHHhHHHHHhcCCEEE
Q 036267 76 LN----VSKDHTFVFED---------------SVSGIKAGVAADLHVV 104 (145)
Q Consensus 76 ~~----~~~~~~~~iGD---------------~~~Di~~a~~~G~~~i 104 (145)
++ +.-..+.|+|| |..|+..|.++|+.+.
T Consensus 183 ~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF~ 230 (422)
T KOG2134|consen 183 ENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKFK 230 (422)
T ss_pred hhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCccC
Confidence 64 23334557766 3458999999997643
No 205
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=95.52 E-value=0.047 Score=39.18 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=37.5
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCc
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGF 49 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~ 49 (145)
..+...++|++++++|++++++|+.+...+...++.+|+..+
T Consensus 17 ~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~~~ 58 (256)
T TIGR01486 17 DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLEDP 58 (256)
T ss_pred CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCc
Confidence 445689999999999999999999999999999999987644
No 206
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.037 Score=39.78 Aligned_cols=96 Identities=8% Similarity=0.111 Sum_probs=61.8
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEec----C-c---ccCCCCChH-------H
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIG----D-E---CERAKPFPD-------P 68 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~----~-~---~~~~kp~~~-------~ 68 (145)
..+.+++|+.+|.+.|.++++++.|+|.+--..++.++.+......+..+++. + + .+..+|--. .
T Consensus 135 s~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v 214 (298)
T KOG3128|consen 135 SNIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSV 214 (298)
T ss_pred hhHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhHHHHHHHccchHH
Confidence 45678899999999999999999999999888888887654332223222221 0 0 111122111 1
Q ss_pred HHHHHHHcC--CCCCcEEEEecCHHhHHHHHhc
Q 036267 69 YLKAIEILN--VSKDHTFVFEDSVSGIKAGVAA 99 (145)
Q Consensus 69 ~~~~~~~~~--~~~~~~~~iGD~~~Di~~a~~~ 99 (145)
.....+.+. -...++++.||+..|+.+|-.+
T Consensus 215 ~~~~s~yf~~~~~~~nVillGdsigdl~ma~gv 247 (298)
T KOG3128|consen 215 LQNESEYFHQLAGRVNVILLGDSIGDLHMADGV 247 (298)
T ss_pred HHhhhHHHhhccCCceEEEeccccccchhhcCC
Confidence 222233332 2667899999999999987653
No 207
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=95.15 E-value=0.06 Score=46.39 Aligned_cols=44 Identities=16% Similarity=0.069 Sum_probs=37.6
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcC
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSG 48 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~ 48 (145)
+-++-+|+.+.++.|+++|+++.++|+.-.+.+-++.-.+++.+
T Consensus 649 EDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll~ 692 (1151)
T KOG0206|consen 649 EDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRLLR 692 (1151)
T ss_pred echhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcCCC
Confidence 34678899999999999999999999999888888877776543
No 208
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.08 E-value=0.064 Score=38.86 Aligned_cols=41 Identities=10% Similarity=0.009 Sum_probs=37.2
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS 47 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 47 (145)
.+.+..+++|++++++|++++++|+.+...+...++.+++.
T Consensus 24 ~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 24 YDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred cCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 35577899999999999999999999999999999999885
No 209
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=94.86 E-value=0.3 Score=32.70 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=57.5
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChH---HHHHHHHHc-----CCcCccceeEec-Cc------ccCCCCChHHHHH
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRA---NAELMITKL-----GLSGFFEAIIIG-DE------CERAKPFPDPYLK 71 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~---~~~~~l~~~-----~l~~~f~~i~~~-~~------~~~~kp~~~~~~~ 71 (145)
...+|+.++.+.+.+.|+++.-+|..+.- ..+..|... ++.+ -.++.+ +. ...-.++|+.|+.
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~--Gpv~~sP~~l~~al~rEvi~~~p~~fK~ 104 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPD--GPVLLSPDSLFSALHREVISKDPEEFKI 104 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCC--CCEEECCcchhhhhhccccccChHHHHH
Confidence 57799999999999999999999999853 344555554 2221 122222 11 1111223444433
Q ss_pred H-HHHc----C-CCCCcEEEEecCHHhHHHHHhcCCE
Q 036267 72 A-IEIL----N-VSKDHTFVFEDSVSGIKAGVAADLH 102 (145)
Q Consensus 72 ~-~~~~----~-~~~~~~~~iGD~~~Di~~a~~~G~~ 102 (145)
. ++.+ . ....=...+|++.+|+.+=+++|++
T Consensus 105 ~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 105 ACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 2 2222 2 1222344789999999999999986
No 210
>PLN02580 trehalose-phosphatase
Probab=94.43 E-value=0.14 Score=39.25 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=44.5
Q ss_pred hHHHHHHHHHcCCCCCc---EEEEecCHHhHHHHHhc-----CCEEEEEcCCCChHHhhccccceeecCCCChhHHHHhh
Q 036267 66 PDPYLKAIEILNVSKDH---TFVFEDSVSGIKAGVAA-----DLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAALE 137 (145)
Q Consensus 66 ~~~~~~~~~~~~~~~~~---~~~iGD~~~Di~~a~~~-----G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~~~ 137 (145)
-..+..++++++++..+ .++|||..+|..+-+.+ | ..|.|..+. + ...+.|.+++..|+ ..+++
T Consensus 303 G~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G-~~I~Vgn~~--~---~t~A~y~L~dp~eV--~~~L~ 374 (384)
T PLN02580 303 GKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRG-YGILVSSVP--K---ESNAFYSLRDPSEV--MEFLK 374 (384)
T ss_pred HHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCc-eEEEEecCC--C---CccceEEcCCHHHH--HHHHH
Confidence 45677788888876653 38999999999998853 4 234443321 1 23478999999994 55555
Q ss_pred hh
Q 036267 138 EL 139 (145)
Q Consensus 138 ~~ 139 (145)
.+
T Consensus 375 ~L 376 (384)
T PLN02580 375 SL 376 (384)
T ss_pred HH
Confidence 54
No 211
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=94.06 E-value=0.12 Score=42.26 Aligned_cols=41 Identities=12% Similarity=0.036 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHcCCCCCcEEEE--ecCHHhHHHHHhcCCEEEE
Q 036267 65 FPDPYLKAIEILNVSKDHTFVF--EDSVSGIKAGVAADLHVVG 105 (145)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~i--GD~~~Di~~a~~~G~~~i~ 105 (145)
+...++.+++.++++.++++.| ||+.||+.+-+.+|..++.
T Consensus 614 KG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM 656 (694)
T PRK14502 614 KGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILV 656 (694)
T ss_pred HHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEE
Confidence 4567788888899888888888 9999999999999975444
No 212
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=94.01 E-value=0.27 Score=41.18 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=35.9
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS 47 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 47 (145)
.+++.|+++..++.|.+.+++++.+|+...-.+-++.+..|+-
T Consensus 673 ~CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv 715 (1160)
T KOG0209|consen 673 SCPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIV 715 (1160)
T ss_pred eCCCCccHHHHHHHHhccCceEEEEeCCCccchheehheeeee
Confidence 4678899999999999999999999998877776666666543
No 213
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=93.53 E-value=0.3 Score=31.45 Aligned_cols=30 Identities=3% Similarity=0.034 Sum_probs=25.9
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChH
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRA 35 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~ 35 (145)
..+.+++.+.|+.++++|+.++++|+.+..
T Consensus 23 ~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~ 52 (126)
T TIGR01689 23 VAPILAVIEKLRHYKALGFEIVISSSRNMR 52 (126)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 346789999999999999999999998754
No 214
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=93.41 E-value=0.84 Score=29.45 Aligned_cols=84 Identities=11% Similarity=0.071 Sum_probs=57.9
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCCC-hHHHHHHHHHcCCcCcc---------ceeEecCcccCCCCChHHHHHH
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNSP-RANAELMITKLGLSGFF---------EAIIIGDECERAKPFPDPYLKA 72 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~-~~~~~~~l~~~~l~~~f---------~~i~~~~~~~~~kp~~~~~~~~ 72 (145)
..+.-.|+..+..|..|++.|+.++++|+.. .+.+...|+.+.+..-+ +.+...+. .+-..+..+
T Consensus 40 g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gvlkps~e~ft~~~~g~g-----sklghfke~ 114 (144)
T KOG4549|consen 40 GEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGVLKPSLEEFTFEAVGDG-----SKLGHFKEF 114 (144)
T ss_pred cceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcccccchhhhcCceeeecCc-----ccchhHHHH
Confidence 3456679999999999999999999999875 56777788887654322 22222222 224556666
Q ss_pred HHHcCCCCCcEEEEecCHH
Q 036267 73 IEILNVSKDHTFVFEDSVS 91 (145)
Q Consensus 73 ~~~~~~~~~~~~~iGD~~~ 91 (145)
-+..+..-.+..++.|-.+
T Consensus 115 ~n~s~~~~k~~~~fdDesr 133 (144)
T KOG4549|consen 115 TNNSNSIEKNKQVFDDESR 133 (144)
T ss_pred hhccCcchhceeeeccccc
Confidence 6666776677777777653
No 215
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=93.37 E-value=0.76 Score=34.40 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=55.6
Q ss_pred ccccCcccCCHHHHHHHHHhCC-CcEEEEeCCChHHHHHHHHHcCCc-------------CccceeEecCcccCCCCChH
Q 036267 2 ASEQLKALNGLDNVKKWVEGCG-LKRAAVTNSPRANAELMITKLGLS-------------GFFEAIIIGDECERAKPFPD 67 (145)
Q Consensus 2 ~~~~~~~~~g~~~~l~~l~~~g-~~~~i~s~~~~~~~~~~l~~~~l~-------------~~f~~i~~~~~~~~~kp~~~ 67 (145)
+...-.++||+-.+.+.|.+.| .+++.+||++......+-+.++-. ..++.++.+... -+..
T Consensus 191 ~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sga~----rK~~ 266 (373)
T COG4850 191 HALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESGAA----RKGQ 266 (373)
T ss_pred cccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccchhh----hccc
Confidence 3455678999999999999988 899999999875555444443211 112333322221 1233
Q ss_pred HHHHHHHHcCCCCCcEEEEecCH-HhHH
Q 036267 68 PYLKAIEILNVSKDHTFVFEDSV-SGIK 94 (145)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~iGD~~-~Di~ 94 (145)
.+..++.++ +..+.+.|||+= .|.+
T Consensus 267 ~l~nil~~~--p~~kfvLVGDsGE~Dpe 292 (373)
T COG4850 267 SLRNILRRY--PDRKFVLVGDSGEHDPE 292 (373)
T ss_pred HHHHHHHhC--CCceEEEecCCCCcCHH
Confidence 455566654 467899999987 6754
No 216
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=93.34 E-value=0.26 Score=41.65 Aligned_cols=38 Identities=5% Similarity=-0.117 Sum_probs=31.5
Q ss_pred CcccCCHHHHHHHH-HhCCCcEEEEeCCChHHHHHHHHH
Q 036267 6 LKALNGLDNVKKWV-EGCGLKRAAVTNSPRANAELMITK 43 (145)
Q Consensus 6 ~~~~~g~~~~l~~l-~~~g~~~~i~s~~~~~~~~~~l~~ 43 (145)
..+-|++.++|++| ++.|..++|+|+.+...++.++..
T Consensus 615 ~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~ 653 (854)
T PLN02205 615 KSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSP 653 (854)
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCC
Confidence 45667899999998 777899999999998888877754
No 217
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=93.06 E-value=0.24 Score=34.07 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=35.3
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHc
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKL 44 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~ 44 (145)
-++-+.+.++|++|+++|++++++|+.+...+..+++.+
T Consensus 16 ~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 16 HELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 457789999999999999999999999999999998864
No 218
>PLN02423 phosphomannomutase
Probab=92.71 E-value=0.17 Score=36.25 Aligned_cols=30 Identities=10% Similarity=-0.035 Sum_probs=27.3
Q ss_pred CCCcEEEEec----CHHhHHHHHhcCCEEEEEcC
Q 036267 79 SKDHTFVFED----SVSGIKAGVAADLHVVGLAT 108 (145)
Q Consensus 79 ~~~~~~~iGD----~~~Di~~a~~~G~~~i~v~~ 108 (145)
++++++.||| +.||+++.+.-|+.++.|..
T Consensus 199 ~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~ 232 (245)
T PLN02423 199 DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTS 232 (245)
T ss_pred CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCC
Confidence 7899999999 69999999988999999963
No 219
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=92.64 E-value=0.57 Score=34.64 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=60.9
Q ss_pred cccCcccCCHHHHHHHHHhCC-CcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc-------cCCCCC-hHHHHHHH
Q 036267 3 SEQLKALNGLDNVKKWVEGCG-LKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC-------ERAKPF-PDPYLKAI 73 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g-~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~-------~~~kp~-~~~~~~~~ 73 (145)
.++=.++|.+-++++.+++.| ++++++||++.+.+..-|. .+|.++.+=|. ...+|. +..+++++
T Consensus 88 ~GEPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L~------~~dql~~sLdA~~~~~~~~InRP~~~~~~e~il 161 (296)
T COG0731 88 SGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEELK------LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKIL 161 (296)
T ss_pred CCCcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHhc------cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHH
Confidence 345568999999999999999 7999999999844444443 34555444321 234553 35556666
Q ss_pred HHcCC---C-CCcEE---EEecCHHhHH--------HHHhcCCEEEEEcCC
Q 036267 74 EILNV---S-KDHTF---VFEDSVSGIK--------AGVAADLHVVGLATR 109 (145)
Q Consensus 74 ~~~~~---~-~~~~~---~iGD~~~Di~--------~a~~~G~~~i~v~~g 109 (145)
+.+.. . ..+++ ++..+.||-. .-+.+....|.+.+-
T Consensus 162 e~L~~~~~~~~~~~vir~tlvkg~N~~~e~~~~~a~ll~~~~Pd~velk~~ 212 (296)
T COG0731 162 EGLEIFRSEYKGRTVIRTTLVKGINDDEEELEEYAELLERINPDFVELKTY 212 (296)
T ss_pred HHHHHhhhcCCCcEEEEEEEeccccCChHHHHHHHHHHHhcCCCeEEEecC
Confidence 55533 1 22222 5556554322 233456667777644
No 220
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=92.06 E-value=0.41 Score=39.34 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=38.2
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF 50 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f 50 (145)
...+...++|+.++++|++++++|+.+...+...++.+++..+|
T Consensus 433 ~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~~~~ 476 (694)
T PRK14502 433 YSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIKDPF 476 (694)
T ss_pred ccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCCCeE
Confidence 34567899999999999999999999999999999998876544
No 221
>PLN02887 hydrolase family protein
Probab=91.76 E-value=0.54 Score=38.05 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=37.2
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS 47 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 47 (145)
++-+...++|++++++|+.++++|+.+...+...++.+++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 56778899999999999999999999999999999988765
No 222
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=91.52 E-value=4.4 Score=32.33 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=51.0
Q ss_pred HHHHHhCCCcEEEEeCCChHHHHHHHHH-cCCcCcc--------ceeEecCcccC-CCCChHHHHHHHHHcCCCCCcEEE
Q 036267 16 KKWVEGCGLKRAAVTNSPRANAELMITK-LGLSGFF--------EAIIIGDECER-AKPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 16 l~~l~~~g~~~~i~s~~~~~~~~~~l~~-~~l~~~f--------~~i~~~~~~~~-~kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
++.++++|.. +|+|..+...++.+.+. +|++.-+ +..+++.-.+. .--..+-..++.+.++.+... +.
T Consensus 116 ~~~~~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g~~~~~-~a 193 (497)
T PLN02177 116 WRVFNSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFGDALPD-LG 193 (497)
T ss_pred HHHHHhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHHhCCCCce-EE
Confidence 3455667754 99999999999999975 6766432 22222211110 000112334444556654444 89
Q ss_pred EecCHHhHHHHHhcCC
Q 036267 86 FEDSVSGIKAGVAADL 101 (145)
Q Consensus 86 iGD~~~Di~~a~~~G~ 101 (145)
.|||.+|......++-
T Consensus 194 YgDS~sD~plL~~a~e 209 (497)
T PLN02177 194 LGDRETDHDFMSICKE 209 (497)
T ss_pred EECCccHHHHHHhCCc
Confidence 9999999999888774
No 223
>PTZ00174 phosphomannomutase; Provisional
Probab=91.50 E-value=0.23 Score=35.49 Aligned_cols=28 Identities=7% Similarity=-0.090 Sum_probs=24.9
Q ss_pred CCcEEEEec----CHHhHHHHHhcCCEEEEEc
Q 036267 80 KDHTFVFED----SVSGIKAGVAADLHVVGLA 107 (145)
Q Consensus 80 ~~~~~~iGD----~~~Di~~a~~~G~~~i~v~ 107 (145)
+++++.||| +.||+++-+.++...++|.
T Consensus 200 ~~eviafGD~~~~~~NDieMl~~~~~~g~~v~ 231 (247)
T PTZ00174 200 FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVK 231 (247)
T ss_pred hhhEEEEcccCCCCCCcHhhhhcCCCceEEeC
Confidence 589999999 8999999998888778886
No 224
>PTZ00174 phosphomannomutase; Provisional
Probab=91.42 E-value=0.45 Score=34.00 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=32.3
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHH
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITK 43 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~ 43 (145)
-++-|..+++|++++++|+.++++|+.+...+...++.
T Consensus 21 ~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~~ 58 (247)
T PTZ00174 21 NPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLGE 58 (247)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 35667789999999999999999999998877776653
No 225
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=90.59 E-value=0.05 Score=39.42 Aligned_cols=96 Identities=13% Similarity=0.194 Sum_probs=67.7
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCC-cCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGL-SGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l-~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
+.-+|++.+||.++.+. +.+++.|..-..++..++..+.- ...|...+..+.+... ...|..-+...|.+.++++
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~---~g~yvKdls~~~~dL~~vi 205 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLLDILDPDRKIISHRLYRDSCTLK---DGNYVKDLSVLGRDLSKVI 205 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHHHHccCCCCeeeeeecccceEeE---CCcEEEEcceeccCcccEE
Confidence 45689999999999987 89999999999999999998754 3344444444433110 1112222245566889999
Q ss_pred EEecCHHhHHHHHhcCCEEEE
Q 036267 85 VFEDSVSGIKAGVAADLHVVG 105 (145)
Q Consensus 85 ~iGD~~~Di~~a~~~G~~~i~ 105 (145)
+|+|++.-...=-++|++.-.
T Consensus 206 IiDNsP~sy~~~p~NgIpI~s 226 (262)
T KOG1605|consen 206 IVDNSPQSYRLQPENGIPIKS 226 (262)
T ss_pred EEcCChHHhccCccCCCcccc
Confidence 999999888777778865433
No 226
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=90.13 E-value=2.8 Score=31.53 Aligned_cols=98 Identities=13% Similarity=0.108 Sum_probs=57.1
Q ss_pred HHHHHHHHHhC-CCc-EEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHc-CCCCCcEEEEec
Q 036267 12 LDNVKKWVEGC-GLK-RAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEIL-NVSKDHTFVFED 88 (145)
Q Consensus 12 ~~~~l~~l~~~-g~~-~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~-~~~~~~~~~iGD 88 (145)
+..+++.|+++ ++. ..++|+.+......+++.+++...++..++.......+-...++..+.+.+ ..+|+=++..||
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~gd 95 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVLVQGD 95 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45677888775 443 566788888888888887888643333332211111111112222232222 235676778888
Q ss_pred CHH---hHHHHHhcCCEEEEEcCC
Q 036267 89 SVS---GIKAGVAADLHVVGLATR 109 (145)
Q Consensus 89 ~~~---Di~~a~~~G~~~i~v~~g 109 (145)
... ...+|+..|++.+.+..|
T Consensus 96 ~~~~la~a~aa~~~~ipv~h~~~g 119 (365)
T TIGR00236 96 TTTTLAGALAAFYLQIPVGHVEAG 119 (365)
T ss_pred chHHHHHHHHHHHhCCCEEEEeCC
Confidence 664 566778889999887544
No 227
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=89.93 E-value=1 Score=34.00 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=50.6
Q ss_pred HHHhC-CCcEEE-EeCCC--hHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHc-CCCCCcEEEEecCHH-
Q 036267 18 WVEGC-GLKRAA-VTNSP--RANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEIL-NVSKDHTFVFEDSVS- 91 (145)
Q Consensus 18 ~l~~~-g~~~~i-~s~~~--~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~-~~~~~~~~~iGD~~~- 91 (145)
.|++. ++.+.+ +|+.+ ..+...+.+.+++ ...+..+..+.....+--..++..+.+.+ ..+|+-+++.||+..
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~i-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~ 80 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFFEGFGI-PKPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVLGDRNEA 80 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT---SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEETTSHHH
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCCC-CCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEEcCCchH
Confidence 34444 555554 47776 7788888888888 66777666443211111112222222222 237899999999995
Q ss_pred --hHHHHHhcCCEEEEEcCC
Q 036267 92 --GIKAGVAADLHVVGLATR 109 (145)
Q Consensus 92 --Di~~a~~~G~~~i~v~~g 109 (145)
-..+|...+++.+++-.|
T Consensus 81 la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 81 LAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHTT-EEEEES--
T ss_pred HHHHHHHHHhCCCEEEecCC
Confidence 455677789999999888
No 228
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=89.56 E-value=6.2 Score=28.48 Aligned_cols=101 Identities=14% Similarity=0.031 Sum_probs=66.0
Q ss_pred cccCcccCCHHHHHHHHHhC---CCcEEEEeCCChHHHHHHHHHcCCcCccc--eeEecCcccCCCCChHHHHHHHHHcC
Q 036267 3 SEQLKALNGLDNVKKWVEGC---GLKRAAVTNSPRANAELMITKLGLSGFFE--AIIIGDECERAKPFPDPYLKAIEILN 77 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~---g~~~~i~s~~~~~~~~~~l~~~~l~~~f~--~i~~~~~~~~~kp~~~~~~~~~~~~~ 77 (145)
.+.-.++|+..+.++..+.. |+.+.-+++.+...++.+.+. |-.---. ..+++. .+-..++.+..+.+..+
T Consensus 100 ~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~-G~~~vmPlg~pIGsg---~Gi~~~~~I~~I~e~~~ 175 (248)
T cd04728 100 GDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA-GCAAVMPLGSPIGSG---QGLLNPYNLRIIIERAD 175 (248)
T ss_pred cCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-CCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhCC
Confidence 34556789999999887776 999996777766777766664 4221101 112211 22234777777766533
Q ss_pred CCCCcEEEEec---CHHhHHHHHhcCCEEEEEcCCCC
Q 036267 78 VSKDHTFVFED---SVSGIKAGVAADLHVVGLATRNP 111 (145)
Q Consensus 78 ~~~~~~~~iGD---~~~Di~~a~~~G~~~i~v~~g~~ 111 (145)
-.++++- +..|...|.+.|+..+.+.++..
T Consensus 176 ----vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 176 ----VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred ----CcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhc
Confidence 2355654 45799999999999999988843
No 229
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=89.23 E-value=2.4 Score=32.29 Aligned_cols=82 Identities=11% Similarity=0.118 Sum_probs=59.5
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEE
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
+.-+||+.-||..+. ..+.++++|+...-.+..+++.++-..++.+-+.++.+..-- ....+=+.+++-+++++++
T Consensus 213 f~kRPgvD~FL~~~a-~~yEIVi~sse~gmt~~pl~d~lDP~g~IsYkLfr~~t~y~~---G~HvKdls~LNRdl~kViv 288 (393)
T KOG2832|consen 213 FKKRPGVDYFLGHLA-KYYEIVVYSSEQGMTVFPLLDALDPKGYISYKLFRGATKYEE---GHHVKDLSKLNRDLQKVIV 288 (393)
T ss_pred eccCchHHHHHHhhc-ccceEEEEecCCccchhhhHhhcCCcceEEEEEecCcccccC---ccchhhhhhhccccceeEE
Confidence 456899999999999 569999999999999999999987666665555544432111 1123335677889999999
Q ss_pred EecCHH
Q 036267 86 FEDSVS 91 (145)
Q Consensus 86 iGD~~~ 91 (145)
|.=..+
T Consensus 289 Vd~d~~ 294 (393)
T KOG2832|consen 289 VDFDAN 294 (393)
T ss_pred EEcccc
Confidence 975543
No 230
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=88.35 E-value=0.37 Score=39.74 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=28.8
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHH
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMIT 42 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~ 42 (145)
-++-++++..|+-|+.+|+++..+|+...+.+..+..
T Consensus 657 DkLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAk 693 (1051)
T KOG0210|consen 657 DKLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAK 693 (1051)
T ss_pred HHHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeeeh
Confidence 3566788999999999999999999986544444433
No 231
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=88.32 E-value=0.8 Score=32.36 Aligned_cols=47 Identities=6% Similarity=0.009 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc
Q 036267 12 LDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC 59 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~ 59 (145)
+.++|.+|+.. +.++++|++....+...+....+...||++++.+..
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl~~~~~~~~fdy~f~enG~ 47 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQLGGDDVLDNFDYVFPENGL 47 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHHSTTTHHHH-SEEEEGGGT
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHHcccchHhhCCeeecCCCC
Confidence 57899999975 999999999887777776422345567888877543
No 232
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=88.25 E-value=1.1 Score=30.86 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCcEEEEeCCChHHHHHHHHHc-----CCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEec
Q 036267 14 NVKKWVEGCGLKRAAVTNSPRANAELMITKL-----GLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFED 88 (145)
Q Consensus 14 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~-----~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD 88 (145)
.+|..++++|++++++...-.+........+ .+-..||.++..++ .-..-..++|.+++++.+.||
T Consensus 109 nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~---------~da~r~~~lG~~~~~v~v~Gn 179 (186)
T PF04413_consen 109 NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSE---------ADAERFRKLGAPPERVHVTGN 179 (186)
T ss_dssp HHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSH---------HHHHHHHTTT-S--SEEE---
T ss_pred HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCH---------HHHHHHHHcCCCcceEEEeCc
Confidence 5688899999999999876443322221111 13355787776554 344556788999999999999
Q ss_pred CHHhHH
Q 036267 89 SVSGIK 94 (145)
Q Consensus 89 ~~~Di~ 94 (145)
-..|..
T Consensus 180 lKfd~~ 185 (186)
T PF04413_consen 180 LKFDQA 185 (186)
T ss_dssp GGG---
T ss_pred chhccc
Confidence 888764
No 233
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=88.20 E-value=0.39 Score=35.89 Aligned_cols=50 Identities=14% Similarity=0.069 Sum_probs=37.1
Q ss_pred cCCCCChHHHHHHHH-------H-cCC-CCCcEEEEecCH-HhHHHHH---------------hcCCEEEEEcCC
Q 036267 60 ERAKPFPDPYLKAIE-------I-LNV-SKDHTFVFEDSV-SGIKAGV---------------AADLHVVGLATR 109 (145)
Q Consensus 60 ~~~kp~~~~~~~~~~-------~-~~~-~~~~~~~iGD~~-~Di~~a~---------------~~G~~~i~v~~g 109 (145)
..+||.+-.|..+.. + .+. ++.+..||||++ .|+..|+ +-||-+|+|.+|
T Consensus 268 t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TG 342 (389)
T KOG1618|consen 268 TLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTG 342 (389)
T ss_pred ccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeee
Confidence 457887765544322 2 233 667899999999 7999996 678999999988
No 234
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=88.06 E-value=8.2 Score=27.97 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=55.7
Q ss_pred ccCCHHHHHHHHHhCCCcEE-EEeCCC-hHHHHHHHHHcCCcCccceeEecCcccCCC--CChHHHHHHHHHcCCCCCcE
Q 036267 8 ALNGLDNVKKWVEGCGLKRA-AVTNSP-RANAELMITKLGLSGFFEAIIIGDECERAK--PFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~-i~s~~~-~~~~~~~l~~~~l~~~f~~i~~~~~~~~~k--p~~~~~~~~~~~~~~~~~~~ 83 (145)
+++...++++.+++.|+..+ +++..+ .+.++.+.+. .+-|.++++.......+ -.+. ....++++.-....-
T Consensus 125 p~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~---~~gfiy~vs~~G~TG~~~~~~~~-~~~~i~~lr~~~~~p 200 (256)
T TIGR00262 125 PLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEK---SQGFVYLVSRAGVTGARNRAASA-LNELVKRLKAYSAKP 200 (256)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHh---CCCCEEEEECCCCCCCcccCChh-HHHHHHHHHhhcCCC
Confidence 44677888899999998855 566554 4566666664 23244555544432222 1122 222222222111223
Q ss_pred EEEecCH---HhHHHHHhcCCEEEEEcCC
Q 036267 84 FVFEDSV---SGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 84 ~~iGD~~---~Di~~a~~~G~~~i~v~~g 109 (145)
+++|=+. .++..+...|++.+-|.+.
T Consensus 201 i~vgfGI~~~e~~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 201 VLVGFGISKPEQVKQAIDAGADGVIVGSA 229 (256)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 6677655 4888888899998888654
No 235
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=87.37 E-value=2.1 Score=30.14 Aligned_cols=44 Identities=16% Similarity=0.121 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecC
Q 036267 12 LDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGD 57 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~ 57 (145)
..+.++ ++++|+.++++|+.+...+..+++.+++.. .+.+++..
T Consensus 20 ~~~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~~-~~~~I~~n 63 (236)
T TIGR02471 20 FVELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLPS-PDVLIARV 63 (236)
T ss_pred HHHHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCCC-CCEEEECC
Confidence 446666 688999999999999999999999988752 33444433
No 236
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=87.16 E-value=2.1 Score=36.73 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=39.6
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeE
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAII 54 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~ 54 (145)
-++.+....+++.|.+++++.+.+|+.....+-.+.+.+|+-.....++
T Consensus 704 NkLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeCgmi~p~~~v~ 752 (1140)
T KOG0208|consen 704 NKLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKECGMIEPQVKVI 752 (1140)
T ss_pred cccccccHHHHHHHHhhcceEEEEcCCchheeeehhhcccccCCCCeEE
Confidence 3677889999999999999999999998777777777777666554443
No 237
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=86.88 E-value=11 Score=28.33 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=68.0
Q ss_pred ccCcccCCHHHHHHHHHhC---CCcEEEEeCCChHHHHHHHHHcCCcCccceeEe-cCcc--cCCCCChHHHHHHHHHcC
Q 036267 4 EQLKALNGLDNVKKWVEGC---GLKRAAVTNSPRANAELMITKLGLSGFFEAIII-GDEC--ERAKPFPDPYLKAIEILN 77 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~---g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~-~~~~--~~~kp~~~~~~~~~~~~~ 77 (145)
++-.++|+..+.++..+.. |+.+.++++.+...++.+.+. |- -.+.. .+.+ +.+-.+|+.++.+.+...
T Consensus 175 e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~-g~----~avmPl~~pIGsg~gv~~p~~i~~~~e~~~ 249 (326)
T PRK11840 175 DAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA-GA----VAVMPLGAPIGSGLGIQNPYTIRLIVEGAT 249 (326)
T ss_pred CCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc-CC----EEEeeccccccCCCCCCCHHHHHHHHHcCC
Confidence 4456788888888877776 999988888877777776663 32 22222 2222 222337888888888733
Q ss_pred CCCCcEEEEecCH---HhHHHHHhcCCEEEEEcCCC
Q 036267 78 VSKDHTFVFEDSV---SGIKAGVAADLHVVGLATRN 110 (145)
Q Consensus 78 ~~~~~~~~iGD~~---~Di~~a~~~G~~~i~v~~g~ 110 (145)
--+++|-+. .|...|.+.|+..+++.++-
T Consensus 250 ----vpVivdAGIg~~sda~~AmelGadgVL~nSaI 281 (326)
T PRK11840 250 ----VPVLVDAGVGTASDAAVAMELGCDGVLMNTAI 281 (326)
T ss_pred ----CcEEEeCCCCCHHHHHHHHHcCCCEEEEccee
Confidence 346666544 69999999999999999884
No 238
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=86.15 E-value=11 Score=27.26 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=57.5
Q ss_pred hCCCcEEEEeCCCh---HHHHHHHHHc--CCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecCH--HhH
Q 036267 21 GCGLKRAAVTNSPR---ANAELMITKL--GLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDSV--SGI 93 (145)
Q Consensus 21 ~~g~~~~i~s~~~~---~~~~~~l~~~--~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~--~Di 93 (145)
+.++.+.+++++.+ +.+....... .|+.-|-.+++.+ ..-|-|..-+..++..|+ .|++|||.+ .+.
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN---~a~PGP~~ARE~l~~~~i---P~IvI~D~p~~K~~ 102 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPN---PAAPGPKKAREILKAAGI---PCIVIGDAPGKKVK 102 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCC---CCCCCchHHHHHHHhcCC---CEEEEcCCCccchH
Confidence 34799999988753 4444333332 3455454444433 355778888888888887 499999999 477
Q ss_pred HHHHhcCCEEEEEcCC
Q 036267 94 KAGVAADLHVVGLATR 109 (145)
Q Consensus 94 ~~a~~~G~~~i~v~~g 109 (145)
+...+.|+..|-+...
T Consensus 103 d~l~~~g~GYIivk~D 118 (277)
T PRK00994 103 DAMEEQGLGYIIVKAD 118 (277)
T ss_pred HHHHhcCCcEEEEecC
Confidence 8889999988888644
No 239
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=85.45 E-value=1.8 Score=30.81 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=33.5
Q ss_pred CHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc
Q 036267 11 GLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS 47 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 47 (145)
.+.+++.+|++.|++++.+|+.+...+....+.+|+.
T Consensus 27 pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 27 PAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred ccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 5778999999999999999999998888888888876
No 240
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=85.32 E-value=13 Score=27.70 Aligned_cols=30 Identities=10% Similarity=-0.106 Sum_probs=25.8
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCCh
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSPR 34 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~ 34 (145)
+=-+.|.+.++++.++++|..+.++||+..
T Consensus 82 EPLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 82 EPLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred cccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 334678999999999999999999999964
No 241
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=84.39 E-value=8.8 Score=24.81 Aligned_cols=98 Identities=9% Similarity=0.076 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCCh-HHHHHHH----HHcCCcCccceeEecCc-c-----cCCCCChHHHHHHHHHcCC
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPR-ANAELMI----TKLGLSGFFEAIIIGDE-C-----ERAKPFPDPYLKAIEILNV 78 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~-~~~~~~l----~~~~l~~~f~~i~~~~~-~-----~~~kp~~~~~~~~~~~~~~ 78 (145)
..+.+.+.+..++|-+++++=|+.. -.+..+. ..+++.......+...+ . ...-..+.....+...+..
T Consensus 22 ~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (138)
T PF13580_consen 22 EKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDI 101 (138)
T ss_dssp HHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCC
Confidence 3455666666778888888877654 2222222 23344444332332222 1 0011123445667777778
Q ss_pred CCCcEEEE----ecCHH---hHHHHHhcCCEEEEEc
Q 036267 79 SKDHTFVF----EDSVS---GIKAGVAADLHVVGLA 107 (145)
Q Consensus 79 ~~~~~~~i----GD~~~---Di~~a~~~G~~~i~v~ 107 (145)
.+.+++++ |.+.+ -++.|++.|+.+|+++
T Consensus 102 ~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp -TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 89999877 56665 4566777899999985
No 242
>PRK00208 thiG thiazole synthase; Reviewed
Probab=84.14 E-value=14 Score=26.81 Aligned_cols=100 Identities=16% Similarity=0.031 Sum_probs=63.6
Q ss_pred ccCcccCCHHHHHHHHHhC---CCcEEEEeCCChHHHHHHHHHcCCcCccc--eeEecCcccCCCCChHHHHHHHHHcCC
Q 036267 4 EQLKALNGLDNVKKWVEGC---GLKRAAVTNSPRANAELMITKLGLSGFFE--AIIIGDECERAKPFPDPYLKAIEILNV 78 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~---g~~~~i~s~~~~~~~~~~l~~~~l~~~f~--~i~~~~~~~~~kp~~~~~~~~~~~~~~ 78 (145)
+.-.++|+..+.++..+.. |+.+.-+++.+...++.+.+. |-.-.-. ..+++. .+-..++.+..+.+..++
T Consensus 101 d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~-G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~~v 176 (250)
T PRK00208 101 DDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA-GCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQADV 176 (250)
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-CCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhcCC
Confidence 4455788888888877776 999995666666666666553 4221101 122211 222236676666665333
Q ss_pred CCCcEEEEecC---HHhHHHHHhcCCEEEEEcCCCC
Q 036267 79 SKDHTFVFEDS---VSGIKAGVAADLHVVGLATRNP 111 (145)
Q Consensus 79 ~~~~~~~iGD~---~~Di~~a~~~G~~~i~v~~g~~ 111 (145)
.++++-+ ..|...|.+.|++.+.+.++..
T Consensus 177 ----pVIveaGI~tpeda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 177 ----PVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred ----eEEEeCCCCCHHHHHHHHHcCCCEEEEChHhh
Confidence 3566644 4699999999999999998843
No 243
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=83.71 E-value=12 Score=30.22 Aligned_cols=87 Identities=11% Similarity=0.012 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhCCCcEEEEeCC-ChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 036267 11 GLDNVKKWVEGCGLKRAAVTNS-PRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDS 89 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s~~-~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~ 89 (145)
++..+|...++.+-++++++-. ....++.+-+.++++-..-.+.+. +-....++++.-.. --++|||.
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~----------~e~~~~~~~l~~~G-~~~viG~~ 153 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTE----------EDARSCVNDLRARG-IGAVVGAG 153 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCH----------HHHHHHHHHHHHCC-CCEEECCh
Confidence 3555566667777788888754 334455555555554212222211 22333333332111 25678999
Q ss_pred HHhHHHHHhcCCEEEEEcCC
Q 036267 90 VSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 90 ~~Di~~a~~~G~~~i~v~~g 109 (145)
.. ...|++.|++.+.+.++
T Consensus 154 ~~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 154 LI-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HH-HHHHHHcCCceEEEecH
Confidence 75 67789999999999876
No 244
>PLN03017 trehalose-phosphatase
Probab=83.63 E-value=1.6 Score=33.31 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=30.1
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHH
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMIT 42 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~ 42 (145)
....+-+++.++|++|. ++++++|+|+.+...+..++.
T Consensus 130 ~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~~ 167 (366)
T PLN03017 130 DKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFVK 167 (366)
T ss_pred ccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhhc
Confidence 44567788899999999 678999999998777776643
No 245
>PLN02580 trehalose-phosphatase
Probab=83.59 E-value=1.9 Score=33.16 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=35.7
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHc
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKL 44 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~ 44 (145)
+..+.+-|+++++|++|.+. .+++|+|+.+...++.++...
T Consensus 137 Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l~~~ 177 (384)
T PLN02580 137 PDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELVGLT 177 (384)
T ss_pred cccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHhCCC
Confidence 56677889999999999988 689999999999999888643
No 246
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=83.27 E-value=9.5 Score=33.34 Aligned_cols=73 Identities=8% Similarity=0.008 Sum_probs=49.0
Q ss_pred hHHHHHHHHHcCCcCccceeEecC----c-ccCCCCChHHHHHHHHHcCCCCCcEE-EEecCHH-hHHHHHhcCCEEEEE
Q 036267 34 RANAELMITKLGLSGFFEAIIIGD----E-CERAKPFPDPYLKAIEILNVSKDHTF-VFEDSVS-GIKAGVAADLHVVGL 106 (145)
Q Consensus 34 ~~~~~~~l~~~~l~~~f~~i~~~~----~-~~~~kp~~~~~~~~~~~~~~~~~~~~-~iGD~~~-Di~~a~~~G~~~i~v 106 (145)
...++..|...++... .+++.+ + +...-.+.+.++++..++|++.++++ ++||+-+ |++... .|...--|
T Consensus 923 v~elr~~Lr~~gLr~~--~iys~~~~~LDVlP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdSGntD~e~Ll-~G~~~tvi 999 (1050)
T TIGR02468 923 VKELRKLLRIQGLRCH--AVYCRNGTRLNVIPLLASRSQALRYLFVRWGIELANMAVFVGESGDTDYEGLL-GGLHKTVI 999 (1050)
T ss_pred HHHHHHHHHhCCCceE--EEeecCCcEeeeeeCCCCHHHHHHHHHHHcCCChHHeEEEeccCCCCCHHHHh-CCceeEEE
Confidence 4667777777776643 333332 1 24455568999999999999999995 5999998 987753 35543333
Q ss_pred cCC
Q 036267 107 ATR 109 (145)
Q Consensus 107 ~~g 109 (145)
..|
T Consensus 1000 ~~g 1002 (1050)
T TIGR02468 1000 LKG 1002 (1050)
T ss_pred Eec
Confidence 334
No 247
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=82.92 E-value=7.6 Score=29.30 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=53.0
Q ss_pred CcccCCHHHHHHHHHhC----CCcEEEEeCCC----hHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcC
Q 036267 6 LKALNGLDNVKKWVEGC----GLKRAAVTNSP----RANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILN 77 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~----g~~~~i~s~~~----~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~ 77 (145)
-++.||+.++|+.|.+. .++.+++||+. +..+..+-+.+|..-.-|.++-+.. .|+.+. .
T Consensus 50 ~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSHs---------P~r~l~---~ 117 (389)
T KOG1618|consen 50 HRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSHS---------PFRLLV---E 117 (389)
T ss_pred CCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhcC---------hHHHHh---h
Confidence 46889999999999988 89999999974 2333344455554422233322211 234443 2
Q ss_pred CCCCcEEEEecCHHhHHHHHhcCCEEE
Q 036267 78 VSKDHTFVFEDSVSGIKAGVAADLHVV 104 (145)
Q Consensus 78 ~~~~~~~~iGD~~~Di~~a~~~G~~~i 104 (145)
..-++++++|+.. --+.|+.-|.+-+
T Consensus 118 ~~~k~vLv~G~~~-vr~vAegyGFk~V 143 (389)
T KOG1618|consen 118 YHYKRVLVVGQGS-VREVAEGYGFKNV 143 (389)
T ss_pred hhhceEEEecCCc-HHHHhhccCccce
Confidence 3357899999554 3455677777633
No 248
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=82.43 E-value=2.6 Score=29.58 Aligned_cols=55 Identities=7% Similarity=-0.025 Sum_probs=39.0
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC 59 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~ 59 (145)
....+..|.+.++|+.|+.. ..++++-+.....+...| ...+...||++++.+..
T Consensus 24 ~~r~~~~~e~~~~l~~lr~~-v~ig~VggsDl~k~~eql-G~~Vl~~fDY~F~ENGl 78 (252)
T KOG3189|consen 24 PPRQKVTPEMLEFLQKLRKK-VTIGFVGGSDLSKQQEQL-GDNVLEEFDYVFSENGL 78 (252)
T ss_pred cccccCCHHHHHHHHHHhhh-eEEEEeecHHHHHHHHHh-chhHHhhhcccccCCCe
Confidence 44556789999999999886 888888777655444444 22355678888887654
No 249
>PLN02151 trehalose-phosphatase
Probab=81.22 E-value=4.1 Score=31.05 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=30.3
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHH
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMIT 42 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~ 42 (145)
+..+.+-|+++++|+.|.. +.+++|+|+.+...+..++.
T Consensus 116 P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 116 PDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred cccccCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHcC
Confidence 4556778888999999984 47899999988777776654
No 250
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=81.06 E-value=1.3 Score=24.79 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=15.6
Q ss_pred HHHHHHHcCCCCCcEEEEecCHHhHHHHHh
Q 036267 69 YLKAIEILNVSKDHTFVFEDSVSGIKAGVA 98 (145)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~ 98 (145)
..+.++++|+ .+|+||...||+....
T Consensus 7 VqQLLK~fG~----~IY~gdr~~DielM~~ 32 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGDRLWDIELMEI 32 (62)
T ss_dssp HHHHHHTTS---------S-HHHHHHHHHH
T ss_pred HHHHHHHCCE----EEEeCChHHHHHHHHH
Confidence 3567788887 8999999999988653
No 251
>PLN02151 trehalose-phosphatase
Probab=80.17 E-value=2.8 Score=31.88 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCCC---cEEEEecCHHhHHHHHhc-----CCEEEEEcCCCChHHhhccccceeecCCCChhHHHHhhh
Q 036267 67 DPYLKAIEILNVSKD---HTFVFEDSVSGIKAGVAA-----DLHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAALEE 138 (145)
Q Consensus 67 ~~~~~~~~~~~~~~~---~~~~iGD~~~Di~~a~~~-----G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~~~~ 138 (145)
.....+++.++.... -.+||||...|-.+-+.+ |+ .|.|..+ + ....+.+.+++..++ ..++..
T Consensus 272 ~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~-gI~Vg~~--~---k~T~A~y~L~dp~eV--~~~L~~ 343 (354)
T PLN02151 272 KALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKILRDKKQGL-GILVSKY--A---KETNASYSLQEPDEV--MEFLER 343 (354)
T ss_pred HHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHHHhhcCCCc-cEEeccC--C---CCCcceEeCCCHHHH--HHHHHH
Confidence 445556665554322 279999999887665543 32 3344322 1 123588999999994 555555
Q ss_pred h
Q 036267 139 L 139 (145)
Q Consensus 139 ~ 139 (145)
|
T Consensus 344 L 344 (354)
T PLN02151 344 L 344 (354)
T ss_pred H
Confidence 4
No 252
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=79.83 E-value=4.7 Score=30.27 Aligned_cols=32 Identities=19% Similarity=0.115 Sum_probs=27.2
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChH
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRA 35 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~ 35 (145)
++--++|.+.++++.++++|+.+.|.||+...
T Consensus 139 GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 139 GEPTLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred ccccchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 34446889999999999999999999999754
No 253
>PLN03017 trehalose-phosphatase
Probab=79.77 E-value=3.5 Score=31.53 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCC---CcEEEEecCHHhHHHHHhcC----CEEEEEcCCCChHHhhccccceeecCCCChhHHHHhhhh
Q 036267 67 DPYLKAIEILNVSK---DHTFVFEDSVSGIKAGVAAD----LHVVGLATRNPERLLLDAKASFIIKDYEDPKLWAALEEL 139 (145)
Q Consensus 67 ~~~~~~~~~~~~~~---~~~~~iGD~~~Di~~a~~~G----~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~ 139 (145)
...+.+++.++... .-.+||||...|-.+-+.+. .-.|.| |..++ ...+.|.+++..|+ ..+|+.|
T Consensus 286 ~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~V--G~~~k---~T~A~y~L~dp~eV--~~fL~~L 358 (366)
T PLN03017 286 KALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILV--SKFPK---DTDASYSLQDPSEV--MDFLARL 358 (366)
T ss_pred HHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEE--CCCCC---CCcceEeCCCHHHH--HHHHHHH
Confidence 45566666666532 24799999998877666542 234444 32111 13488899999984 5666554
No 254
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=79.56 E-value=4.7 Score=29.99 Aligned_cols=42 Identities=10% Similarity=-0.087 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHcCCC--CCcEEEEecCHHhHHHHHhcCCEEEE
Q 036267 64 PFPDPYLKAIEILNVS--KDHTFVFEDSVSGIKAGVAADLHVVG 105 (145)
Q Consensus 64 p~~~~~~~~~~~~~~~--~~~~~~iGD~~~Di~~a~~~G~~~i~ 105 (145)
++......+.+.+.-. +-.++-+|||.||+.+-..+...++-
T Consensus 208 dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vvi 251 (302)
T PRK12702 208 PGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVL 251 (302)
T ss_pred CHHHHHHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEEe
Confidence 4456666666665542 44899999999999999999877655
No 255
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=79.22 E-value=22 Score=27.50 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCC-CcE-EEEeCCCh--HHHHHHHHHcCCc-CccceeEecCcccCCCCChHHHHHHHHH----c-CCCCC
Q 036267 12 LDNVKKWVEGCG-LKR-AAVTNSPR--ANAELMITKLGLS-GFFEAIIIGDECERAKPFPDPYLKAIEI----L-NVSKD 81 (145)
Q Consensus 12 ~~~~l~~l~~~g-~~~-~i~s~~~~--~~~~~~l~~~~l~-~~f~~i~~~~~~~~~kp~~~~~~~~~~~----~-~~~~~ 81 (145)
+..+++.+.+.+ +.. ++.|++.. ++....++-+++. .-++.-+... +.+..+..-.++.. + ...|+
T Consensus 19 mapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~----~~tl~~~t~~~i~~~~~vl~~~kPD 94 (383)
T COG0381 19 MAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKP----GQTLGEITGNIIEGLSKVLEEEKPD 94 (383)
T ss_pred HhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhcccc----CCCHHHHHHHHHHHHHHHHHhhCCC
Confidence 345677887775 554 55588887 8999999999987 4444332211 11111222222211 1 45788
Q ss_pred cEEEEecCHHh---HHHHHhcCCEEEEEcCC
Q 036267 82 HTFVFEDSVSG---IKAGVAADLHVVGLATR 109 (145)
Q Consensus 82 ~~~~iGD~~~D---i~~a~~~G~~~i~v~~g 109 (145)
-+++=||+..= -.+|....++..+|-.|
T Consensus 95 ~VlVhGDT~t~lA~alaa~~~~IpV~HvEAG 125 (383)
T COG0381 95 LVLVHGDTNTTLAGALAAFYLKIPVGHVEAG 125 (383)
T ss_pred EEEEeCCcchHHHHHHHHHHhCCceEEEecc
Confidence 89999999864 44666678888888766
No 256
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=78.10 E-value=22 Score=28.83 Aligned_cols=87 Identities=6% Similarity=-0.025 Sum_probs=50.8
Q ss_pred CHHHHHHHHHhCCCcEEEEeCC-ChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 036267 11 GLDNVKKWVEGCGLKRAAVTNS-PRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDS 89 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s~~-~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~ 89 (145)
++..+|...++.+-++++++-. ....++.+-+.+++.-..-.+.+.++. .....-+++.|+ -++|||.
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~-------~~~v~~lk~~G~----~~vvG~~ 163 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDA-------RGQINELKANGI----EAVVGAG 163 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHH-------HHHHHHHHHCCC----CEEEcCc
Confidence 3555666667777788888854 344555555555554222222221221 122222333354 4678998
Q ss_pred HHhHHHHHhcCCEEEEEcCC
Q 036267 90 VSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 90 ~~Di~~a~~~G~~~i~v~~g 109 (145)
.. ...|+++|+..+++..+
T Consensus 164 ~~-~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 164 LI-TDLAEEAGMTGIFIYSA 182 (538)
T ss_pred hH-HHHHHHhCCceEEecCH
Confidence 76 78899999999999765
No 257
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=78.10 E-value=6.1 Score=26.81 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=24.8
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChH
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRA 35 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~ 35 (145)
--+.+.+.++++.+++.|+.+.+.||+...
T Consensus 73 Pll~~~l~~li~~~~~~g~~v~i~TNg~~~ 102 (191)
T TIGR02495 73 PTLQAGLPDFLRKVRELGFEVKLDTNGSNP 102 (191)
T ss_pred ccCcHhHHHHHHHHHHCCCeEEEEeCCCCH
Confidence 345677889999999999999999999643
No 258
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=77.34 E-value=24 Score=25.27 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCC--ChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHc-CCCCCcEEEE
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNS--PRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEIL-NVSKDHTFVF 86 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~--~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~-~~~~~~~~~i 86 (145)
+...++++.+++.|++.+++-+. +.+.++..++.. +.|-.. +....... ..+......++++ ...++..+.+
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~---~~~l~m-sv~~~~g~-~~~~~~~~~i~~lr~~~~~~~i~v 190 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS---PLFIYY-GLRPATGV-PLPVSVERNIKRVRNLVGNKYLVV 190 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC---CCEEEE-EeCCCCCC-CchHHHHHHHHHHHHhcCCCCEEE
Confidence 57788999999999998888655 345666666642 223222 22211111 2232323222222 2222334778
Q ss_pred ecCH---HhHHHHHhcCCEEEEEcCC
Q 036267 87 EDSV---SGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 87 GD~~---~Di~~a~~~G~~~i~v~~g 109 (145)
|-+. .++..+.++|++.+.+.+.
T Consensus 191 ~gGI~~~e~i~~~~~~gaD~vvvGSa 216 (244)
T PRK13125 191 GFGLDSPEDARDALSAGADGVVVGTA 216 (244)
T ss_pred eCCcCCHHHHHHHHHcCCCEEEECHH
Confidence 8766 5888888899998888654
No 259
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=77.19 E-value=15 Score=27.19 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=30.8
Q ss_pred hHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEEEEcCCCC
Q 036267 66 PDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVVGLATRNP 111 (145)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i~v~~g~~ 111 (145)
..-+..+.++.|. ++-.+ |+..||+...=.|..+++|+.|-+
T Consensus 227 s~rL~eiA~~~g~-~aylI---d~~~ei~~~w~~~~~~VGvTAGAS 268 (294)
T COG0761 227 SNRLAEIAKRHGK-PAYLI---DDAEEIDPEWLKGVKTVGVTAGAS 268 (294)
T ss_pred HHHHHHHHHHhCC-CeEEe---CChHhCCHHHhcCccEEEEecCCC
Confidence 4556777777776 44333 777888888888889999988843
No 260
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=76.70 E-value=3.2 Score=29.33 Aligned_cols=39 Identities=10% Similarity=-0.028 Sum_probs=22.8
Q ss_pred cccCcccCCHHHHHHHHHhCC-CcEEEEeCCChHHHHHHH
Q 036267 3 SEQLKALNGLDNVKKWVEGCG-LKRAAVTNSPRANAELMI 41 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g-~~~~i~s~~~~~~~~~~l 41 (145)
+....+.+++.++|+.|.+.. ..++|+|+.+....+.+.
T Consensus 15 p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~ 54 (235)
T PF02358_consen 15 PDAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERFG 54 (235)
T ss_dssp GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-
T ss_pred ccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhc
Confidence 456677889999999997763 469999998876644443
No 261
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.27 E-value=29 Score=27.16 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=26.5
Q ss_pred CcccCCCCChHHHHHHHHHcC-CCCCcEEEEecCHHhHHH
Q 036267 57 DECERAKPFPDPYLKAIEILN-VSKDHTFVFEDSVSGIKA 95 (145)
Q Consensus 57 ~~~~~~kp~~~~~~~~~~~~~-~~~~~~~~iGD~~~Di~~ 95 (145)
++.++.+-..++++...+--+ +.|+++++|=|+--.-.+
T Consensus 190 DTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaa 229 (483)
T KOG0780|consen 190 DTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAA 229 (483)
T ss_pred eCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhH
Confidence 444666667777776655543 589999999998754333
No 262
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=75.59 E-value=6.7 Score=26.52 Aligned_cols=87 Identities=15% Similarity=0.005 Sum_probs=48.0
Q ss_pred HHHHHHHHHhCCCcEEEEeCCChH-HHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecCH
Q 036267 12 LDNVKKWVEGCGLKRAAVTNSPRA-NAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDSV 90 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~~~~-~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~ 90 (145)
+..+|..++..+-++++++..... .+..+-+.+|+.-. -..+ . .++-+...++++.-+. --++||++.
T Consensus 66 il~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~-~~~~--~-------~~~e~~~~i~~~~~~G-~~viVGg~~ 134 (176)
T PF06506_consen 66 ILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIK-IYPY--D-------SEEEIEAAIKQAKAEG-VDVIVGGGV 134 (176)
T ss_dssp HHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEE-EEEE--S-------SHHHHHHHHHHHHHTT---EEEESHH
T ss_pred HHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceE-EEEE--C-------CHHHHHHHHHHHHHcC-CcEEECCHH
Confidence 445556666677788888755432 24555555555311 1111 1 1334555555542222 357788887
Q ss_pred HhHHHHHhcCCEEEEEcCCC
Q 036267 91 SGIKAGVAADLHVVGLATRN 110 (145)
Q Consensus 91 ~Di~~a~~~G~~~i~v~~g~ 110 (145)
. ...|++.|++++.+.+|.
T Consensus 135 ~-~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 135 V-CRLARKLGLPGVLIESGE 153 (176)
T ss_dssp H-HHHHHHTTSEEEESS--H
T ss_pred H-HHHHHHcCCcEEEEEecH
Confidence 4 788899999999998763
No 263
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=75.14 E-value=30 Score=25.30 Aligned_cols=99 Identities=12% Similarity=0.009 Sum_probs=67.1
Q ss_pred ccCcccCCHHHHH---HHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc--ceeEecCcccCCCCChHHHHHHHHHcCC
Q 036267 4 EQLKALNGLDNVK---KWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF--EAIIIGDECERAKPFPDPYLKAIEILNV 78 (145)
Q Consensus 4 ~~~~~~~g~~~~l---~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f--~~i~~~~~~~~~kp~~~~~~~~~~~~~~ 78 (145)
+.-.++|+..+.+ +.|.+.|+.+.-.++.+...++++.+ .|-.... -.-++ .+.+-..+..++.+++...+
T Consensus 115 D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed-~Gc~aVMPlgsPIG---Sg~Gl~n~~~l~~i~e~~~v 190 (267)
T CHL00162 115 DPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLED-IGCATVMPLGSPIG---SGQGLQNLLNLQIIIENAKI 190 (267)
T ss_pred CCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHH-cCCeEEeeccCccc---CCCCCCCHHHHHHHHHcCCC
Confidence 4455777776666 56788999999999998877777665 3422111 11111 23344567888888886543
Q ss_pred CCCcEEEEecC---HHhHHHHHhcCCEEEEEcCCC
Q 036267 79 SKDHTFVFEDS---VSGIKAGVAADLHVVGLATRN 110 (145)
Q Consensus 79 ~~~~~~~iGD~---~~Di~~a~~~G~~~i~v~~g~ 110 (145)
-+++|-+ ..|...|.+.|++.+++.++-
T Consensus 191 ----pVivdAGIgt~sDa~~AmElGaDgVL~nSaI 221 (267)
T CHL00162 191 ----PVIIDAGIGTPSEASQAMELGASGVLLNTAV 221 (267)
T ss_pred ----cEEEeCCcCCHHHHHHHHHcCCCEEeeccee
Confidence 3555544 479999999999999998883
No 264
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=74.00 E-value=11 Score=22.89 Aligned_cols=36 Identities=14% Similarity=0.023 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF 50 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f 50 (145)
..+.++++++|.++.++.-. ......++..|+.+.|
T Consensus 61 ~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~ 96 (106)
T TIGR02886 61 LGRYKKIKNEGGEVIVCNVS--PAVKRLFELSGLFKII 96 (106)
T ss_pred HHHHHHHHHcCCEEEEEeCC--HHHHHHHHHhCCceEE
Confidence 35667788888888877755 6777888888887766
No 265
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=72.70 E-value=50 Score=26.78 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=51.7
Q ss_pred ccCCHHHHH-HHHHhCCCcEEEEeCCChH----HHHHHHHHcCCcCccceeEecCcccCCCCChHHHH---HHHHHcCCC
Q 036267 8 ALNGLDNVK-KWVEGCGLKRAAVTNSPRA----NAELMITKLGLSGFFEAIIIGDECERAKPFPDPYL---KAIEILNVS 79 (145)
Q Consensus 8 ~~~g~~~~l-~~l~~~g~~~~i~s~~~~~----~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~---~~~~~~~~~ 79 (145)
.=+|+.+-+ +.+++.|.+++++++.... .+...|+..|+. .++.++...+ ..|+- +... ..+.+.+.+
T Consensus 193 iG~g~l~~l~~~l~~~g~k~~iV~d~~v~~~~~~l~~~L~~~g~~-v~~~v~p~~E--~~ksl-~~v~~~~~~l~~~~~~ 268 (542)
T PRK14021 193 IGEGAMNHLPQVLGPKPVKVALIHTQPVQRHSDRARTLLRQGGYE-VSDIVIPDAE--AGKTI-EVANGIWQRLGNEGFT 268 (542)
T ss_pred EcCChHHHHHHHHHhcCCeEEEEECccHHHHHHHHHHHHHhCCCc-eEEEEeCCCc--ccCCH-HHHHHHHHHHHhcCCC
Confidence 345655444 3445556677777765432 223334444542 2333332222 11222 2233 333444553
Q ss_pred CC-cEEEEecCH-HhHHHHHh----cCCEEEEEcCC
Q 036267 80 KD-HTFVFEDSV-SGIKAGVA----ADLHVVGLATR 109 (145)
Q Consensus 80 ~~-~~~~iGD~~-~Di~~a~~----~G~~~i~v~~g 109 (145)
.. -++.||-+. -|+..+.+ .|++++.|.+.
T Consensus 269 r~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPTT 304 (542)
T PRK14021 269 RSDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPTS 304 (542)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCCh
Confidence 44 455698866 79887776 59999999873
No 266
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=72.31 E-value=4.6 Score=28.83 Aligned_cols=29 Identities=14% Similarity=0.014 Sum_probs=25.3
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCChHH
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPRAN 36 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~~~ 36 (145)
+.+++.++++.+++.|+++.+-||+....
T Consensus 85 l~~~l~~li~~l~~~g~~v~leTNGtl~~ 113 (238)
T TIGR03365 85 LQKPLGELIDLGKAKGYRFALETQGSVWQ 113 (238)
T ss_pred hhHhHHHHHHHHHHCCCCEEEECCCCCcH
Confidence 45789999999999999999999997543
No 267
>PLN02591 tryptophan synthase
Probab=72.09 E-value=35 Score=24.73 Aligned_cols=98 Identities=9% Similarity=0.036 Sum_probs=52.4
Q ss_pred cCCHHHHHHHHHhCCCcEEEEe-CCC-hHHHHHHHHHcCCcCccceeEecCcc-cCCCCChHHHHHHHHHcCCCCCcEEE
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVT-NSP-RANAELMITKLGLSGFFEAIIIGDEC-ERAKPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s-~~~-~~~~~~~l~~~~l~~~f~~i~~~~~~-~~~kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
++...++.+.+++.|+..+.+- ..+ .+.++.+.+. ..-|-+.++.... +.....+..+...+++..--.+-=++
T Consensus 117 ~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~---~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~ 193 (250)
T PLN02591 117 LEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEA---SEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVA 193 (250)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHh---CCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceE
Confidence 3556677777777776655553 443 3445555554 2223344443332 22212233344433333222333445
Q ss_pred EecCH---HhHHHHHhcCCEEEEEcCC
Q 036267 86 FEDSV---SGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 86 iGD~~---~Di~~a~~~G~~~i~v~~g 109 (145)
+|=+. .|+..+.+.|++.+-|.+.
T Consensus 194 vGFGI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 194 VGFGISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred EeCCCCCHHHHHHHHhcCCCEEEECHH
Confidence 56444 5888888899999888654
No 268
>PRK04302 triosephosphate isomerase; Provisional
Probab=71.99 E-value=32 Score=24.21 Aligned_cols=99 Identities=18% Similarity=0.206 Sum_probs=53.9
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCC----CCChHHHHHHHHHcCC-CCC
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERA----KPFPDPYLKAIEILNV-SKD 81 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~----kp~~~~~~~~~~~~~~-~~~ 81 (145)
.++..+.++++..++.|+..+++++. ...++. +...+ .-|-++.+..-.+.. ...+.......+...- ..+
T Consensus 98 ~~~~e~~~~v~~a~~~Gl~~I~~v~~-~~~~~~-~~~~~--~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~ 173 (223)
T PRK04302 98 LTLADIEAVVERAKKLGLESVVCVNN-PETSAA-AAALG--PDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPD 173 (223)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEcCC-HHHHHH-HhcCC--CCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCC
Confidence 45667788899999999988877776 333333 22222 111111111111111 2345555554444432 223
Q ss_pred cEEEEecCH---HhHHHHHhcCCEEEEEcCC
Q 036267 82 HTFVFEDSV---SGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 82 ~~~~iGD~~---~Di~~a~~~G~~~i~v~~g 109 (145)
--++.|-+. +++..+...|++.+.|.+.
T Consensus 174 ~pvi~GggI~~~e~~~~~~~~gadGvlVGsa 204 (223)
T PRK04302 174 VKVLCGAGISTGEDVKAALELGADGVLLASG 204 (223)
T ss_pred CEEEEECCCCCHHHHHHHHcCCCCEEEEehH
Confidence 334445544 6888888899999998654
No 269
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=71.60 E-value=5.9 Score=26.17 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=17.5
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCCh
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPR 34 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~ 34 (145)
.+.+.++++.+++.|+++.+.||...
T Consensus 74 ~~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 74 REALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 34566777777777777777776544
No 270
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.59 E-value=5.7 Score=22.38 Aligned_cols=25 Identities=8% Similarity=0.131 Sum_probs=20.9
Q ss_pred HHHHHHcCCCCCcEEEEecCHHhHHHHHh
Q 036267 70 LKAIEILNVSKDHTFVFEDSVSGIKAGVA 98 (145)
Q Consensus 70 ~~~~~~~~~~~~~~~~iGD~~~Di~~a~~ 98 (145)
.+.++++|+ ++++||...||+..+.
T Consensus 8 qQlLK~~G~----ivyfg~r~~~iemm~~ 32 (68)
T COG4483 8 QQLLKKFGI----IVYFGKRLYDIEMMQI 32 (68)
T ss_pred HHHHHHCCe----eeecCCHHHHHHHHHH
Confidence 567788887 8999999999998764
No 271
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=71.47 E-value=30 Score=23.72 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhC--CCcEEEEeCCCh--HHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEE
Q 036267 11 GLDNVKKWVEGC--GLKRAAVTNSPR--ANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVF 86 (145)
Q Consensus 11 g~~~~l~~l~~~--g~~~~i~s~~~~--~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 86 (145)
-+..+++.|+++ ++++.+-|.... +.+...+ .+.....+..-| .+....++++.+. |+-++++
T Consensus 36 a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~-----~~~v~~~~~P~D------~~~~~~rfl~~~~--P~~~i~~ 102 (186)
T PF04413_consen 36 AARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL-----PDRVDVQYLPLD------FPWAVRRFLDHWR--PDLLIWV 102 (186)
T ss_dssp HHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG------GGG-SEEE---S------SHHHHHHHHHHH----SEEEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC-----CCCeEEEEeCcc------CHHHHHHHHHHhC--CCEEEEE
Confidence 356788888876 788887776532 2222222 222333333223 3678888888765 7889999
Q ss_pred ecCH--HhHHHHHhcCCEEEEEcCC
Q 036267 87 EDSV--SGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 87 GD~~--~Di~~a~~~G~~~i~v~~g 109 (145)
+..+ |=|..|++.|++.+.|..-
T Consensus 103 EtElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 103 ETELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp S----HHHHHH-----S-EEEEEE-
T ss_pred ccccCHHHHHHHhhcCCCEEEEeee
Confidence 9877 5788888999999999644
No 272
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=71.41 E-value=8.3 Score=23.77 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcC
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLG 45 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~ 45 (145)
.+.+.++.+++++.|+.++.+|..+.+.++..++..+
T Consensus 45 l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~ 81 (124)
T PF00578_consen 45 LPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG 81 (124)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT
T ss_pred hhHHHHHhhhhccceEEeeecccccccchhhhhhhhc
Confidence 3556777788888899999999988888888888776
No 273
>PLN02423 phosphomannomutase
Probab=70.95 E-value=8.4 Score=27.56 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=29.0
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHH
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITK 43 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~ 43 (145)
++.|...++|++|+++ +.++++|+.....+...+..
T Consensus 24 ~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~~~ 59 (245)
T PLN02423 24 EATPEMLEFMKELRKV-VTVGVVGGSDLSKISEQLGK 59 (245)
T ss_pred cCCHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHhcc
Confidence 4667889999999976 99999999977666555554
No 274
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=70.69 E-value=15 Score=28.46 Aligned_cols=83 Identities=17% Similarity=0.205 Sum_probs=59.6
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEE
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVF 86 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 86 (145)
.-.|++.+|+..+.+- +++++.|......++.+++.++=.+.|...+..+.+ .-+... |..-+..++.+-+++++|
T Consensus 252 ~kRp~l~~fl~~ls~~-~~l~~ft~s~~~y~~~v~d~l~~~k~~~~~lfr~sc--~~~~G~-~ikDis~i~r~l~~viiI 327 (390)
T COG5190 252 SKRPELDYFLGKLSKI-HELVYFTASVKRYADPVLDILDSDKVFSHRLFRESC--VSYLGV-YIKDISKIGRSLDKVIII 327 (390)
T ss_pred cCChHHHHHHhhhhhh-EEEEEEecchhhhcchHHHhccccceeehhhhcccc--eeccCc-hhhhHHhhccCCCceEEe
Confidence 4578999999999887 899999999999999888877655555433333332 122223 444556677888999999
Q ss_pred ecCHHhH
Q 036267 87 EDSVSGI 93 (145)
Q Consensus 87 GD~~~Di 93 (145)
..+++-.
T Consensus 328 d~~p~SY 334 (390)
T COG5190 328 DNSPASY 334 (390)
T ss_pred eCChhhh
Confidence 9999644
No 275
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=70.69 E-value=14 Score=21.72 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF 50 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f 50 (145)
.++.++++++|..+.+..-. ..+...++..|+.++|
T Consensus 60 ~~l~~~~~~~g~~v~i~~~~--~~~~~~l~~~gl~~~~ 95 (99)
T cd07043 60 LGAYKRARAAGGRLVLVNVS--PAVRRVLELTGLDRLF 95 (99)
T ss_pred HHHHHHHHHcCCeEEEEcCC--HHHHHHHHHhCcceee
Confidence 44556666666665554433 4666667766665544
No 276
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=70.53 E-value=9.7 Score=25.23 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=48.3
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCC--ChHHHHHHHHHc----CCcCccceeEecCcccCCCCChHHHHHHHHHcC
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNS--PRANAELMITKL----GLSGFFEAIIIGDECERAKPFPDPYLKAIEILN 77 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~--~~~~~~~~l~~~----~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~ 77 (145)
+++.+.|++.+++++|.+. +.++|+|.. ....++...+.+ ..-++-..++++.. +
T Consensus 65 RnL~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgnK------------------n 125 (180)
T COG4502 65 RNLGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGNK------------------N 125 (180)
T ss_pred hhcCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecCC------------------C
Confidence 3577899999999999986 899999876 666777666542 22222223333221 1
Q ss_pred CCCCcEEEEecCHHhHHHHHh
Q 036267 78 VSKDHTFVFEDSVSGIKAGVA 98 (145)
Q Consensus 78 ~~~~~~~~iGD~~~Di~~a~~ 98 (145)
+ ..-=++|.|++..++.-.-
T Consensus 126 i-vkaDilIDDnp~nLE~F~G 145 (180)
T COG4502 126 I-VKADILIDDNPLNLENFKG 145 (180)
T ss_pred e-EEeeEEecCCchhhhhccC
Confidence 1 1223678899888877553
No 277
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=69.95 E-value=13 Score=26.18 Aligned_cols=37 Identities=8% Similarity=-0.076 Sum_probs=27.6
Q ss_pred cccCC-HHHHHHHHHhCCCcEEEEeCCC--hHHHHHHHHH
Q 036267 7 KALNG-LDNVKKWVEGCGLKRAAVTNSP--RANAELMITK 43 (145)
Q Consensus 7 ~~~~g-~~~~l~~l~~~g~~~~i~s~~~--~~~~~~~l~~ 43 (145)
.+.++ +.++++.+++.|+.+++-||+. .+..+.++..
T Consensus 50 llq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~ 89 (213)
T PRK10076 50 LMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKL 89 (213)
T ss_pred HcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHh
Confidence 34555 5899999999999999999994 3455555543
No 278
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=69.10 E-value=48 Score=25.19 Aligned_cols=111 Identities=13% Similarity=0.174 Sum_probs=59.7
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCC------hHHHHHHHHHcCCCCCcEEEE
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPF------PDPYLKAIEILNVSKDHTFVF 86 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~------~~~~~~~~~~~~~~~~~~~~i 86 (145)
.++|++|+++|+.++.+|=. .|+. .|..|-. +++...+-+ |+....++++-...-.+++.|
T Consensus 189 ~~LL~kLk~kGv~~afvTLH-----------VGaG-TF~pV~~-~~i~eH~MH~E~~~v~~eta~~i~~~k~~GgRIiaV 255 (348)
T COG0809 189 EELLEKLKAKGVEIAFVTLH-----------VGAG-TFRPVKV-ENIEEHKMHSEYYEVPQETADAINAAKARGGRIIAV 255 (348)
T ss_pred HHHHHHHHHCCceEEEEEEE-----------eccc-cccccee-ccccccccchhheecCHHHHHHHHHHHHcCCeEEEE
Confidence 57788888888888888722 1111 1111111 111111111 222233333333445789999
Q ss_pred ecCH-HhHHHHHhc-------CCEEEEEcCCCChHHhhccccceeecCCCCh--hHHHHhhhhcc
Q 036267 87 EDSV-SGIKAGVAA-------DLHVVGLATRNPERLLLDAKASFIIKDYEDP--KLWAALEELDM 141 (145)
Q Consensus 87 GD~~-~Di~~a~~~-------G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~--~~~~~~~~~~~ 141 (145)
|-+. .-++.|.+. |+..++|..|+.-+ -.+..+.+++-- ....+++.+.+
T Consensus 256 GTTs~R~LEsa~~~~~~~~~sg~T~IFI~PGy~~~-----~vD~LiTNFHlPkSTLlMLVsAFaG 315 (348)
T COG0809 256 GTTSVRTLESAAREAGLKAFSGWTDIFIYPGYRFK-----VVDALITNFHLPKSTLLMLVSAFAG 315 (348)
T ss_pred cchhHHHHHHHhcccCcCcCcCcccEEEcCCCcce-----eeeeeeecCcCCccHHHHHHHHhcC
Confidence 9887 799988764 46678888886422 245556665542 24444544443
No 279
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=68.91 E-value=38 Score=26.75 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHH-hCCCcEEEEe-CC-ChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcC-CCCCcEE
Q 036267 9 LNGLDNVKKWVE-GCGLKRAAVT-NS-PRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILN-VSKDHTF 84 (145)
Q Consensus 9 ~~g~~~~l~~l~-~~g~~~~i~s-~~-~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~-~~~~~~~ 84 (145)
+|.+.+-|+.|. +-|++++-.. +. +.+.++.-++.+.. ..+|.++. ++.++-.-+..++..+.+-.. +.|.+++
T Consensus 140 RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~-~~~DvvIv-DTAGRl~ide~Lm~El~~Ik~~~~P~E~l 217 (451)
T COG0541 140 RPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKE-EGYDVVIV-DTAGRLHIDEELMDELKEIKEVINPDETL 217 (451)
T ss_pred ChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHH-cCCCEEEE-eCCCcccccHHHHHHHHHHHhhcCCCeEE
Confidence 456666666663 3444444431 22 33455555555432 22454443 333444445566666555444 5899999
Q ss_pred EEecCHH
Q 036267 85 VFEDSVS 91 (145)
Q Consensus 85 ~iGD~~~ 91 (145)
+|=|+..
T Consensus 218 lVvDam~ 224 (451)
T COG0541 218 LVVDAMI 224 (451)
T ss_pred EEEeccc
Confidence 9999884
No 280
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=68.86 E-value=25 Score=22.30 Aligned_cols=64 Identities=5% Similarity=-0.047 Sum_probs=43.9
Q ss_pred CCHHHHHHH-HHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCc-ccCCCCChHHHHHHHHH
Q 036267 10 NGLDNVKKW-VEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDE-CERAKPFPDPYLKAIEI 75 (145)
Q Consensus 10 ~g~~~~l~~-l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~-~~~~kp~~~~~~~~~~~ 75 (145)
+.+++++++ +.+.++=++++|....+.+...++.+. ..+..|+.-.+ -....|..+.+.+.++.
T Consensus 46 eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~--~~~PaIieIP~k~~~y~~~~d~i~~~~~~ 111 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHT--RSIPAVLEIPSKDHPYDASKDSILRRARG 111 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcC--CcCCEEEEECCCCCCCCCcccHHHHHHHH
Confidence 567888888 778889999999998888888888765 55555544333 23445555555554443
No 281
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=68.67 E-value=10 Score=27.76 Aligned_cols=43 Identities=14% Similarity=0.003 Sum_probs=35.3
Q ss_pred cccCcccCCHHHHHHHHHhC-CCcEEEEeCCChHHHHHHHHHcC
Q 036267 3 SEQLKALNGLDNVKKWVEGC-GLKRAAVTNSPRANAELMITKLG 45 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~-g~~~~i~s~~~~~~~~~~l~~~~ 45 (145)
+....+.+++.++|++|..+ +..++|+|+.+...++.++.-.+
T Consensus 36 p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~ 79 (266)
T COG1877 36 PEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPG 79 (266)
T ss_pred ccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCC
Confidence 45667889999999999887 34599999999999998887433
No 282
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=68.49 E-value=43 Score=24.33 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=58.3
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCC--ChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHH------------
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNS--PRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKA------------ 72 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~--~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~------------ 72 (145)
+.+..+.++++...++|-++.+++.. .++.+....+++|..--...++++ .....|+-...+.+.
T Consensus 48 ~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~r~g~~yV~~RwLgG-~LTN~~ti~~si~rl~~lE~~~~~~~~ 126 (252)
T COG0052 48 ERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAERTGAYYVNGRWLGG-MLTNFKTIRKSIKRLKELEKMEEDGFD 126 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHhCCceecCcccCc-cccCchhHHHHHHHHHHHHHHhhcccc
Confidence 34556778888888888888888765 234445555666643212333332 222333311111111
Q ss_pred -----------------HHHc-CCC-----CCcEEEEecCHH---hHHHHHhcCCEEEEEcCCCChH
Q 036267 73 -----------------IEIL-NVS-----KDHTFVFEDSVS---GIKAGVAADLHVVGLATRNPER 113 (145)
Q Consensus 73 -----------------~~~~-~~~-----~~~~~~iGD~~~---Di~~a~~~G~~~i~v~~g~~~~ 113 (145)
.+.+ |+. |+ +++|=|-.. -+.-|+..|+++|++.......
T Consensus 127 ~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd-~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dp 192 (252)
T COG0052 127 GLTKKEALMLTRELEKLEKSLGGIKDMKGLPD-VLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDP 192 (252)
T ss_pred cccHHHHHHHHHHHHHHHHhhcchhhccCCCC-EEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCC
Confidence 1111 222 54 666666653 6777888999999998775544
No 283
>PRK10812 putative DNAse; Provisional
Probab=68.28 E-value=43 Score=24.33 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHH
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPRANAELMITK 43 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~ 43 (145)
....+++++.++.|+..+++.+.........++.
T Consensus 20 ~d~~~vl~~a~~~gv~~~~~~~~~~~~~~~~~~l 53 (265)
T PRK10812 20 KDVDDVLAKAAARDVKFCLAVATTLPGYRHMRDL 53 (265)
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 4788999999999998777777766666655553
No 284
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=68.22 E-value=34 Score=28.70 Aligned_cols=95 Identities=19% Similarity=0.132 Sum_probs=67.0
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccc---eeEecC--cc--------------cCCCCChH
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFE---AIIIGD--EC--------------ERAKPFPD 67 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~---~i~~~~--~~--------------~~~kp~~~ 67 (145)
+++....+.+.+-...|..+-++|+......+.--.++|+..-+. ...+.+ +. +..--.|+
T Consensus 492 pprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAgVfpe 571 (942)
T KOG0205|consen 492 PPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFPE 571 (942)
T ss_pred CCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCHH
Confidence 456778888999999999999999998877777777776553221 111111 10 11122356
Q ss_pred HHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCC
Q 036267 68 PYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADL 101 (145)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~ 101 (145)
.-..+++++.-...-|-|.||+.||..+-+.+..
T Consensus 572 hKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdi 605 (942)
T KOG0205|consen 572 HKYEIVKILQERKHIVGMTGDGVNDAPALKKADI 605 (942)
T ss_pred HHHHHHHHHhhcCceecccCCCcccchhhccccc
Confidence 6667778887777889999999999999999864
No 285
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=68.18 E-value=43 Score=24.21 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=60.2
Q ss_pred cccCcccCCHHHHH---HHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecC---cccCCCCChHHHHHHHHHc
Q 036267 3 SEQLKALNGLDNVK---KWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGD---ECERAKPFPDPYLKAIEIL 76 (145)
Q Consensus 3 ~~~~~~~~g~~~~l---~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~---~~~~~kp~~~~~~~~~~~~ 76 (145)
.+.-.++|+..+.+ +.|.+.|+.+.-.++.+...++++.+ .|-. .+..-. ..+.+--.+..++.++++.
T Consensus 100 ~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d-~Gca----avMPlgsPIGSg~Gi~n~~~l~~i~~~~ 174 (247)
T PF05690_consen 100 GDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLED-AGCA----AVMPLGSPIGSGRGIQNPYNLRIIIERA 174 (247)
T ss_dssp S-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHH-TT-S----EBEEBSSSTTT---SSTHHHHHHHHHHG
T ss_pred CCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHH-CCCC----EEEecccccccCcCCCCHHHHHHHHHhc
Confidence 44556788777776 56788999999999998888777666 3422 121111 1133444578899999988
Q ss_pred CCCCCcEEEEec---CHHhHHHHHhcCCEEEEEcCC
Q 036267 77 NVSKDHTFVFED---SVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 77 ~~~~~~~~~iGD---~~~Di~~a~~~G~~~i~v~~g 109 (145)
+++ ++|+- +.+|..-|-+.|++.+++.+.
T Consensus 175 ~vP----vIvDAGiG~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 175 DVP----VIVDAGIGTPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp SSS----BEEES---SHHHHHHHHHTT-SEEEESHH
T ss_pred CCc----EEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 663 34443 447999999999999999754
No 286
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=68.04 E-value=7.7 Score=24.22 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCChH
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPRA 35 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~~ 35 (145)
+.+.++++.++++|.+++.+|+.+..
T Consensus 60 ~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 45788889999999999999987543
No 287
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=68.00 E-value=7 Score=20.26 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHc
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKL 44 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~ 44 (145)
.++.+.|.+.|++.+-+|...+......|..+
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHHH
Confidence 46778899999999999999888888777653
No 288
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=67.36 E-value=7.4 Score=24.40 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCChHH
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPRAN 36 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~~~ 36 (145)
+.+.++++.++++|.+++.+|+.....
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 568889999999999999999875433
No 289
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=67.13 E-value=29 Score=26.29 Aligned_cols=92 Identities=10% Similarity=0.133 Sum_probs=53.2
Q ss_pred HHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc-cCCCCChHHHHH---HHHHc-CCCCCcEEEE
Q 036267 12 LDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC-ERAKPFPDPYLK---AIEIL-NVSKDHTFVF 86 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~-~~~kp~~~~~~~---~~~~~-~~~~~~~~~i 86 (145)
.+.++.+|.++|+.+.|.+-. .+....+|+..|++. .+++.... ...|-. ....+ +.+.. ..+|+ +++-
T Consensus 16 Fk~~I~eL~~~GheV~it~R~-~~~~~~LL~~yg~~y---~~iG~~g~~~~~Kl~-~~~~R~~~l~~~~~~~~pD-v~is 89 (335)
T PF04007_consen 16 FKNIIRELEKRGHEVLITARD-KDETEELLDLYGIDY---IVIGKHGDSLYGKLL-ESIERQYKLLKLIKKFKPD-VAIS 89 (335)
T ss_pred HHHHHHHHHhCCCEEEEEEec-cchHHHHHHHcCCCe---EEEcCCCCCHHHHHH-HHHHHHHHHHHHHHhhCCC-EEEe
Confidence 356788999999998887754 477888999888652 12222211 011100 01111 11111 23443 4444
Q ss_pred ecCHHhHHHHHhcCCEEEEEcCC
Q 036267 87 EDSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 87 GD~~~Di~~a~~~G~~~i~v~~g 109 (145)
..|..-...|.-.|++++.+...
T Consensus 90 ~~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 90 FGSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred cCcHHHHHHHHHhCCCeEEEecC
Confidence 56666667889999999998765
No 290
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=67.00 E-value=54 Score=24.94 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=26.3
Q ss_pred CCCCcEEEEecCHH---hHHHHHhcCCEEEEEcCC
Q 036267 78 VSKDHTFVFEDSVS---GIKAGVAADLHVVGLATR 109 (145)
Q Consensus 78 ~~~~~~~~iGD~~~---Di~~a~~~G~~~i~v~~g 109 (145)
.+|+-+++.||+.. -..+|...|++++++-.|
T Consensus 92 ~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 92 LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 46888999999973 566778889999998777
No 291
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=66.04 E-value=20 Score=22.12 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCC
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGL 46 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l 46 (145)
.+....|.+.|+++++++-++.+.++...+..++
T Consensus 3 ~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~ 36 (115)
T PF13911_consen 3 SRRKPELEAAGVKLVVIGCGSPEGIEKFCELTGF 36 (115)
T ss_pred hHhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCC
Confidence 4567889999999999999988678888876554
No 292
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=65.93 E-value=17 Score=27.66 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=31.2
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCCh---HHHHHHHHHcCCc
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPR---ANAELMITKLGLS 47 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~---~~~~~~l~~~~l~ 47 (145)
++--+.|++.++++.+++.|+.+.+.||+.. +.++ .|...|+.
T Consensus 71 GEPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~-~L~~~g~~ 116 (378)
T PRK05301 71 GEPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLA-ALKDAGLD 116 (378)
T ss_pred CccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHH-HHHHcCCC
Confidence 4445678999999999999999999999853 3333 34444543
No 293
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=65.60 E-value=6.3 Score=26.88 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=56.4
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHH---HHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAE---LMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~---~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
.+..++...|..++++ .+++.+|.......+ .++..-.+ .++.+.-. ++.. --.+++.+++ -
T Consensus 72 l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l~~q~i--h~~~l~i~-----g~h~---KV~~vrth~i----d 136 (194)
T COG5663 72 LLAQLVKQVLPSLKEE-HRLIYITARKADLTRITYAWLFIQNI--HYDHLEIV-----GLHH---KVEAVRTHNI----D 136 (194)
T ss_pred HHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHHHHhcc--chhhhhhh-----cccc---cchhhHhhcc----C
Confidence 3456777888888887 577777766543333 22322111 12322111 1111 1334555555 3
Q ss_pred EEEecCH-HhHHHHHhcCCEEEEEcCCCChHH
Q 036267 84 FVFEDSV-SGIKAGVAADLHVVGLATRNPERL 114 (145)
Q Consensus 84 ~~iGD~~-~Di~~a~~~G~~~i~v~~g~~~~~ 114 (145)
+++.|+. +-.+.|+++|++.+.+.+.+++..
T Consensus 137 lf~ed~~~na~~iAk~~~~~vilins~ynRkp 168 (194)
T COG5663 137 LFFEDSHDNAGQIAKNAGIPVILINSPYNRKP 168 (194)
T ss_pred ccccccCchHHHHHHhcCCcEEEecCcccccc
Confidence 7888998 899999999999999998876544
No 294
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=64.75 E-value=21 Score=21.53 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc
Q 036267 14 NVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF 50 (145)
Q Consensus 14 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f 50 (145)
++.+.++++|..+.++.-. +.....++..|+...|
T Consensus 66 ~~~~~~~~~~~~~~l~~~~--~~~~~~l~~~~l~~~~ 100 (108)
T TIGR00377 66 GRYKQVRRVGGQLVLVSVS--PRVARLLDITGLLRII 100 (108)
T ss_pred HHHHHHHhcCCEEEEEeCC--HHHHHHHHHhChhhee
Confidence 3445556666665555543 5556666666665544
No 295
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=64.54 E-value=41 Score=22.64 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCcEEEEeCCChHHHHHH
Q 036267 12 LDNVKKWVEGCGLKRAAVTNSPRANAELM 40 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~ 40 (145)
+.++++.+.+.+.+++++-+. .+.+...
T Consensus 35 ~~~ll~~~~~~~~~v~llG~~-~~~~~~~ 62 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGAK-PEVLEKA 62 (171)
T ss_pred HHHHHHHHHHcCCeEEEECCC-HHHHHHH
Confidence 456777788888999998444 3444443
No 296
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=64.36 E-value=20 Score=27.06 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=25.7
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCC
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSP 33 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~ 33 (145)
++--+.|++.++++.+++.|+.+.+.||+.
T Consensus 62 GEPll~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 62 GEPLARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 344467899999999999999999999985
No 297
>PLN02334 ribulose-phosphate 3-epimerase
Probab=63.85 E-value=49 Score=23.33 Aligned_cols=97 Identities=16% Similarity=0.089 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHhCCCcEEEEeC--CChHHHHHHHHHcCCcCccc--eeEecCcccCCCCChHHHHHHHHHcCC-CCCcEE
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTN--SPRANAELMITKLGLSGFFE--AIIIGDECERAKPFPDPYLKAIEILNV-SKDHTF 84 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~--~~~~~~~~~l~~~~l~~~f~--~i~~~~~~~~~kp~~~~~~~~~~~~~~-~~~~~~ 84 (145)
+...+.++.+++.|.++++..+ .+.+.++..++..| .+|+- .++.+.+ ..+..+..+..+.+-... ..-.++
T Consensus 102 d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~-~Dyi~~~~v~pg~~--~~~~~~~~~~~i~~~~~~~~~~~I~ 178 (229)
T PLN02334 102 IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGL-VDMVLVMSVEPGFG--GQSFIPSMMDKVRALRKKYPELDIE 178 (229)
T ss_pred hhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccC-CCEEEEEEEecCCC--ccccCHHHHHHHHHHHHhCCCCcEE
Confidence 4467889999999999999987 34555555554311 23331 1222111 122223334333221122 223466
Q ss_pred EEe-cCHHhHHHHHhcCCEEEEEcCC
Q 036267 85 VFE-DSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 85 ~iG-D~~~Di~~a~~~G~~~i~v~~g 109 (145)
++| =+...+....++|+..+.+.+.
T Consensus 179 a~GGI~~e~i~~l~~aGad~vvvgsa 204 (229)
T PLN02334 179 VDGGVGPSTIDKAAEAGANVIVAGSA 204 (229)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEEChH
Confidence 664 5567999999999998888654
No 298
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=63.46 E-value=24 Score=21.96 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF 50 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f 50 (145)
..+++.++..|..+.+++.+ +.+...++..|+...|
T Consensus 66 ~~~~~~~~~~g~~~~l~~i~--p~v~~~~~~~gl~~~~ 101 (117)
T COG1366 66 VALLKSARLRGVELVLVGIQ--PEVARTLELTGLDKSF 101 (117)
T ss_pred HHHHHHHHhcCCeEEEEeCC--HHHHHHHHHhCchhhc
Confidence 34567778888888888777 6777788888888766
No 299
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=63.20 E-value=8.1 Score=28.00 Aligned_cols=41 Identities=27% Similarity=0.376 Sum_probs=33.9
Q ss_pred CCCh----HHHHHHHHHcCCCC--CcEEEEecCH-HhHHHHHhcCCEE
Q 036267 63 KPFP----DPYLKAIEILNVSK--DHTFVFEDSV-SGIKAGVAADLHV 103 (145)
Q Consensus 63 kp~~----~~~~~~~~~~~~~~--~~~~~iGD~~-~Di~~a~~~G~~~ 103 (145)
||.| +.|+..++.+|+++ .++-||.|.+ +--..|.-.|+.+
T Consensus 81 KPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEV 128 (279)
T cd00733 81 KPSPDNIQELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEV 128 (279)
T ss_pred CCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEE
Confidence 5665 77889999999966 4789999999 8999999988763
No 300
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=63.19 E-value=47 Score=22.93 Aligned_cols=36 Identities=6% Similarity=-0.078 Sum_probs=18.6
Q ss_pred HHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCCEEE
Q 036267 69 YLKAIEILNVSKDHTFVFEDSVSGIKAGVAADLHVV 104 (145)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~~~i 104 (145)
+...+++.+..+.-.++||-..-.=+.+++.|.+..
T Consensus 155 ~i~~l~~~~~~~~v~i~vGG~~~~~~~~~~~gad~~ 190 (197)
T TIGR02370 155 INDKLKEEGYRDSVKFMVGGAPVTQDWADKIGADVY 190 (197)
T ss_pred HHHHHHHcCCCCCCEEEEEChhcCHHHHHHhCCcEE
Confidence 334444445544445666666533345666665543
No 301
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=63.19 E-value=55 Score=23.67 Aligned_cols=116 Identities=13% Similarity=0.190 Sum_probs=64.0
Q ss_pred ccCcccCCHHHHHHHHHhCC-CcEEEEeCCChHHHHHHHH-HcCCcCccceeEecCcccCC----------CCC-hHHHH
Q 036267 4 EQLKALNGLDNVKKWVEGCG-LKRAAVTNSPRANAELMIT-KLGLSGFFEAIIIGDECERA----------KPF-PDPYL 70 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g-~~~~i~s~~~~~~~~~~l~-~~~l~~~f~~i~~~~~~~~~----------kp~-~~~~~ 70 (145)
+.+.......++.+.+.+.+ -++.+.|+. + .+..+.. ...-...|-.+....+...+ -|. .++=.
T Consensus 110 ~~~~~v~~~~eA~~~l~~~~~~~iflttGs-k-~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~ 187 (249)
T PF02571_consen 110 DNWHYVDSYEEAAELLKELGGGRIFLTTGS-K-NLPPFVPAPLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELNR 187 (249)
T ss_pred CeEEEeCCHHHHHHHHhhcCCCCEEEeCch-h-hHHHHhhcccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHHH
Confidence 45778889999999998887 555555554 2 2222322 22222333344333322111 122 23335
Q ss_pred HHHHHcCCCCCcEEEEecC----H-HhHHHHHhcCCEEEEEcCCCChHHhhccccceeecCCCCh
Q 036267 71 KAIEILNVSKDHTFVFEDS----V-SGIKAGVAADLHVVGLATRNPERLLLDAKASFIIKDYEDP 130 (145)
Q Consensus 71 ~~~~~~~~~~~~~~~iGD~----~-~Di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~ 130 (145)
..+++++++ +++.=|| . .=+++|++.|++.+.|.+..... +..++++++|+
T Consensus 188 al~~~~~i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~------~~~~~~~~~e~ 243 (249)
T PF02571_consen 188 ALFRQYGID---VLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEPY------GDPVVETIEEL 243 (249)
T ss_pred HHHHHcCCC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCC------CCcccCCHHHH
Confidence 566666753 5544333 2 46899999999999997653221 23335666664
No 302
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=62.86 E-value=42 Score=22.21 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=16.2
Q ss_pred cCCHHHHHHHHHh-CCCcEEEEe--CCChH
Q 036267 9 LNGLDNVKKWVEG-CGLKRAAVT--NSPRA 35 (145)
Q Consensus 9 ~~g~~~~l~~l~~-~g~~~~i~s--~~~~~ 35 (145)
++.+.++.+++++ .+++-+++. +++.-
T Consensus 4 ~~~i~~~~~~i~~~~~~~~iv~~GiGGS~l 33 (158)
T cd05015 4 LERIKEFAEKVRSGKKITDVVVIGIGGSDL 33 (158)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEecCccHH
Confidence 4556777777776 456655554 44444
No 303
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=62.70 E-value=11 Score=23.65 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCChH
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPRA 35 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~~ 35 (145)
+.+.++++.++++|.+++.+|+....
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 61 KETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred hHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 46778888999999999999987543
No 304
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=62.69 E-value=8.4 Score=27.98 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=33.9
Q ss_pred CCCh----HHHHHHHHHcCCCC--CcEEEEecCH-HhHHHHHhcCCEE
Q 036267 63 KPFP----DPYLKAIEILNVSK--DHTFVFEDSV-SGIKAGVAADLHV 103 (145)
Q Consensus 63 kp~~----~~~~~~~~~~~~~~--~~~~~iGD~~-~Di~~a~~~G~~~ 103 (145)
||.| +.|+..++.+|+++ .++-||.|.+ +--..|.-.|+.+
T Consensus 85 KPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEV 132 (283)
T PRK09348 85 KPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEV 132 (283)
T ss_pred cCCCccHHHHHHHHHHHhCCCccccceeEeecCCCCCcccccccceEE
Confidence 5665 77888999999976 4789999999 8999999988753
No 305
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=62.52 E-value=16 Score=31.75 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCChHHH-HHHHHHcC---CcCc--cceeEecCcccCCCCChHHHHHHHHHcCCCCCc
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPRANA-ELMITKLG---LSGF--FEAIIIGDECERAKPFPDPYLKAIEILNVSKDH 82 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~~~~-~~~l~~~~---l~~~--f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 82 (145)
-.+..+.++....+|++++-+.......- +...+++. ++.- |-..+.-+ ..-|+.......-+.+.+ .+.
T Consensus 649 P~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~~~~~Rd~vEs~l~FlGLiVme--NkLK~~T~~VI~eL~~An--IRt 724 (1140)
T KOG0208|consen 649 PADYQEVLKEYTHQGFRVIALASKELETSTLQKAQKLSRDTVESNLEFLGLIVME--NKLKEETKRVIDELNRAN--IRT 724 (1140)
T ss_pred CccHHHHHHHHHhCCeEEEEEecCccCcchHHHHhhccHhhhhccceeeEEEEee--cccccccHHHHHHHHhhc--ceE
Confidence 45789999999999999999877654333 22222221 1111 11112111 233444444444444434 356
Q ss_pred EEEEecCH-HhHHHHHhcCC
Q 036267 83 TFVFEDSV-SGIKAGVAADL 101 (145)
Q Consensus 83 ~~~iGD~~-~Di~~a~~~G~ 101 (145)
+..-||++ ..|-.|+++|+
T Consensus 725 VMcTGDNllTaisVakeCgm 744 (1140)
T KOG0208|consen 725 VMCTGDNLLTAISVAKECGM 744 (1140)
T ss_pred EEEcCCchheeeehhhcccc
Confidence 67789999 79999999997
No 306
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=62.39 E-value=49 Score=22.84 Aligned_cols=84 Identities=7% Similarity=0.033 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCccc---CCCC-ChHH---HHHHHHHcCCCCCcEE
Q 036267 12 LDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECE---RAKP-FPDP---YLKAIEILNVSKDHTF 84 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~---~~kp-~~~~---~~~~~~~~~~~~~~~~ 84 (145)
+.++++.|++.|+++++--=+....--..+..+.. |.+--..... ...+ .... +...++.+|+ +++
T Consensus 135 ~~~~i~~l~~~G~~ialddfg~~~~~~~~l~~l~~----d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~vi 207 (241)
T smart00052 135 AVATLQRLRELGVRIALDDFGTGYSSLSYLKRLPV----DLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGL---QVV 207 (241)
T ss_pred HHHHHHHHHHCCCEEEEeCCCCcHHHHHHHHhCCC----CeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCC---eEE
Confidence 44889999999999887653332333334444332 2221111100 0111 1222 3334444443 466
Q ss_pred EEe-cCHHhHHHHHhcCCE
Q 036267 85 VFE-DSVSGIKAGVAADLH 102 (145)
Q Consensus 85 ~iG-D~~~Di~~a~~~G~~ 102 (145)
.-| ++..+.+.+++.|+.
T Consensus 208 a~gVe~~~~~~~l~~~Gi~ 226 (241)
T smart00052 208 AEGVETPEQLDLLRSLGCD 226 (241)
T ss_pred EecCCCHHHHHHHHHcCCC
Confidence 666 777899999999985
No 307
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=62.01 E-value=64 Score=25.07 Aligned_cols=31 Identities=3% Similarity=0.114 Sum_probs=23.9
Q ss_pred CCCCCcEEEEecCH--HhHHHHHhcCCEEEEEc
Q 036267 77 NVSKDHTFVFEDSV--SGIKAGVAADLHVVGLA 107 (145)
Q Consensus 77 ~~~~~~~~~iGD~~--~Di~~a~~~G~~~i~v~ 107 (145)
|.+++++++-|... .+|..|.+.|+.++-+.
T Consensus 93 G~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vd 125 (394)
T COG0019 93 GFPPERIVFSGPAKSEEEIAFALELGIKLINVD 125 (394)
T ss_pred CCChhhEEECCCCCCHHHHHHHHHcCCcEEEeC
Confidence 78888888888776 48888888888766664
No 308
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=61.63 E-value=19 Score=28.03 Aligned_cols=106 Identities=11% Similarity=0.095 Sum_probs=54.6
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEE-eCCC---hHHHHHHHHHcCCcCccceeEecCcc----cCCCCChHHHHHHHHHc
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAV-TNSP---RANAELMITKLGLSGFFEAIIIGDEC----ERAKPFPDPYLKAIEIL 76 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~-s~~~---~~~~~~~l~~~~l~~~f~~i~~~~~~----~~~kp~~~~~~~~~~~~ 76 (145)
..-.+|.+.++|+.+++.|+++++. ||+. .......+...+++...-.+-+.+.. ..+.|..+.....++.+
T Consensus 84 epl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L 163 (404)
T TIGR03278 84 DVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRF 163 (404)
T ss_pred ccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4456899999999999999999995 8864 22333333334454322222222211 12334433333333333
Q ss_pred --CCCCC-cEEEE---ecCH---HhHHHHHhcCCEEEEEcCCC
Q 036267 77 --NVSKD-HTFVF---EDSV---SGIKAGVAADLHVVGLATRN 110 (145)
Q Consensus 77 --~~~~~-~~~~i---GD~~---~Di~~a~~~G~~~i~v~~g~ 110 (145)
+...- +++.| -|+. .=+..+.+.|+..+++..-+
T Consensus 164 ~e~~~v~~~ivlIPGiND~eel~~ti~~L~~lg~~~V~L~~y~ 206 (404)
T TIGR03278 164 CESCEVHAASVIIPGVNDGDVLWKTCADLESWGAKALILMRFA 206 (404)
T ss_pred HhcCCEEEEEEEeCCccCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 22221 22332 2322 22445556788888776543
No 309
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=61.26 E-value=9.5 Score=27.87 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=33.8
Q ss_pred CCCh----HHHHHHHHHcCCCC--CcEEEEecCH-HhHHHHHhcCCEE
Q 036267 63 KPFP----DPYLKAIEILNVSK--DHTFVFEDSV-SGIKAGVAADLHV 103 (145)
Q Consensus 63 kp~~----~~~~~~~~~~~~~~--~~~~~iGD~~-~Di~~a~~~G~~~ 103 (145)
||.| +.|+..++.+|+++ .++-||.|++ +--..|.-.|+.+
T Consensus 82 KPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEV 129 (293)
T TIGR00388 82 KPSPDNIQELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWEV 129 (293)
T ss_pred CCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEE
Confidence 5665 67888999999976 4789999999 8999999988753
No 310
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=61.10 E-value=7.1 Score=27.56 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=24.8
Q ss_pred hHHHHHHHHHcCCC---CCcEEEEecCHHhHHHHHhcCC-----EEEEEcCCCChHHhhccccceeecCC
Q 036267 66 PDPYLKAIEILNVS---KDHTFVFEDSVSGIKAGVAADL-----HVVGLATRNPERLLLDAKASFIIKDY 127 (145)
Q Consensus 66 ~~~~~~~~~~~~~~---~~~~~~iGD~~~Di~~a~~~G~-----~~i~v~~g~~~~~~~~~~~~~~~~~l 127 (145)
-.....++++++.. +.-++|+||...|-.+-+.+.- -.+.|......+ ....+.|.+++.
T Consensus 167 G~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~~~~~~~--~~t~A~y~l~~p 234 (235)
T PF02358_consen 167 GSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVGSVSVGE--KPTAASYRLDDP 234 (235)
T ss_dssp HHHHHHHHTTS---------EEEEESSHHHHHHHHTTTTS----EEEEES--------------------
T ss_pred HHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEEeecccc--cccccccccccC
Confidence 34556666666554 6789999999998877766543 245554432111 123456655543
No 311
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=60.50 E-value=18 Score=23.40 Aligned_cols=80 Identities=8% Similarity=0.061 Sum_probs=48.1
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCCh---HHHHHHHHHc---CCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCc
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPR---ANAELMITKL---GLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDH 82 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~---~~~~~~l~~~---~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 82 (145)
+--..++++...+.+..++++|+... +.+..+++.+ ++. .+..+.+ ...|.. . ...++++|+ ..
T Consensus 39 ~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~-~i~vivG-----G~~~~~-~-~~~l~~~Gv--d~ 108 (132)
T TIGR00640 39 FQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRP-DILVVVG-----GVIPPQ-D-FDELKEMGV--AE 108 (132)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCC-CCEEEEe-----CCCChH-h-HHHHHHCCC--CE
Confidence 34567899999999999999987543 4444444433 332 1222222 112322 2 234667787 67
Q ss_pred EEEEecCHHhHHHHHh
Q 036267 83 TFVFEDSVSGIKAGVA 98 (145)
Q Consensus 83 ~~~iGD~~~Di~~a~~ 98 (145)
++.-|.+..++..+..
T Consensus 109 ~~~~gt~~~~i~~~l~ 124 (132)
T TIGR00640 109 IFGPGTPIPESAIFLL 124 (132)
T ss_pred EECCCCCHHHHHHHHH
Confidence 8899988877766543
No 312
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=60.13 E-value=21 Score=22.87 Aligned_cols=32 Identities=6% Similarity=0.036 Sum_probs=13.8
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHc
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKL 44 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~ 44 (145)
.+..+++.+.|+.++.+|..+.+.++...+..
T Consensus 52 ~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~ 83 (149)
T cd03018 52 RDSLELFEAAGAEVLGISVDSPFSLRAWAEEN 83 (149)
T ss_pred HHHHHHHHhCCCEEEEecCCCHHHHHHHHHhc
Confidence 33344444444444444444444444444433
No 313
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=60.06 E-value=8.3 Score=21.03 Aligned_cols=29 Identities=10% Similarity=-0.043 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCChHHHH
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPRANAE 38 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~~~~~ 38 (145)
|+-++-|..|.++|.++.|++-..-..++
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~eF~~CW 30 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYSEFQYCW 30 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HHHHHHHH
T ss_pred cHHHHHHHHHHHCCCeEEecCcHHHHHHH
Confidence 34578899999999999999876433333
No 314
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=60.05 E-value=20 Score=25.43 Aligned_cols=90 Identities=13% Similarity=0.055 Sum_probs=58.4
Q ss_pred cccCCHH-HHHHHHHhCCCcEEEEeCCChH-----HHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCC
Q 036267 7 KALNGLD-NVKKWVEGCGLKRAAVTNSPRA-----NAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSK 80 (145)
Q Consensus 7 ~~~~g~~-~~l~~l~~~g~~~~i~s~~~~~-----~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~ 80 (145)
.+.|++. ++.+.+++.|.+.+|+...... .++..++.+|+.-.|...+++-+. .....+..+++.+|-+.
T Consensus 59 ~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~----~~~p~i~~F~~~fGkP~ 134 (217)
T PF02593_consen 59 GLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEE----NGNPQIDEFAEYFGKPK 134 (217)
T ss_pred ccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccccCC----CCChhHHHHHHHhCCce
Confidence 3456665 5667778899999999776655 889999999988777776654332 22345777777788755
Q ss_pred CcEEEEecCHHhHHHHHhcC
Q 036267 81 DHTFVFEDSVSGIKAGVAAD 100 (145)
Q Consensus 81 ~~~~~iGD~~~Di~~a~~~G 100 (145)
=++.+=+|...|++.-+.+-
T Consensus 135 ~ei~v~~~~I~~V~VlR~aP 154 (217)
T PF02593_consen 135 VEIEVENGKIKDVKVLRSAP 154 (217)
T ss_pred EEEEecCCcEEEEEEEecCC
Confidence 45543333334554444443
No 315
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=60.02 E-value=70 Score=23.85 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCH--HhHHHHHhcCCEEEEEcCC
Q 036267 65 FPDPYLKAIEILNVSKDHTFVFEDSV--SGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~iGD~~--~Di~~a~~~G~~~i~v~~g 109 (145)
....+.++.+..+++ ++.-|+=. .|+..+...|+..+.+.+.
T Consensus 149 ~~~ll~~v~~~~~iP---viaaGGI~~~~~~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 149 TMALVPQVVDAVSIP---VIAAGGIADGRGMAAAFALGAEAVQMGTR 192 (307)
T ss_pred HHHHHHHHHHHhCCC---EEEECCCCCHHHHHHHHHcCCCEeecchH
Confidence 445566666655543 77777544 6899999999998888755
No 316
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=60.00 E-value=39 Score=24.50 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=50.8
Q ss_pred hCCCcEEEEeCCCh---HHHHHHHHHc--CCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecCH--HhH
Q 036267 21 GCGLKRAAVTNSPR---ANAELMITKL--GLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDSV--SGI 93 (145)
Q Consensus 21 ~~g~~~~i~s~~~~---~~~~~~l~~~--~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~--~Di 93 (145)
+.++.+.+++++.+ +.++...... .|+..|-.+++.+ ...|-|..-+.++...+++ |++|||.+ .+-
T Consensus 28 RedI~vrv~gsGaKm~pe~~e~~~~~~~~~~~pdf~I~isPN---~~~PGP~~ARE~l~~~~iP---~IvI~D~p~~k~k 101 (276)
T PF01993_consen 28 REDIDVRVVGSGAKMGPEDVEEVVTKMLKEWDPDFVIVISPN---AAAPGPTKAREMLSAKGIP---CIVISDAPTKKAK 101 (276)
T ss_dssp -SSEEEEEEEEET--SHHHHHHHHHHHHHHH--SEEEEE-S----TTSHHHHHHHHHHHHSSS----EEEEEEGGGGGGH
T ss_pred cCCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCC---CCCCCcHHHHHHHHhCCCC---EEEEcCCCchhhH
Confidence 34788888887753 3333332211 2444454444433 3556677888888887875 99999998 377
Q ss_pred HHHHhcCCEEEEEcCC
Q 036267 94 KAGVAADLHVVGLATR 109 (145)
Q Consensus 94 ~~a~~~G~~~i~v~~g 109 (145)
+.....|+..|-+...
T Consensus 102 d~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 102 DALEEEGFGYIIVKAD 117 (276)
T ss_dssp HHHHHTT-EEEEETTS
T ss_pred HHHHhcCCcEEEEecC
Confidence 7888899998888644
No 317
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=59.57 E-value=85 Score=24.67 Aligned_cols=86 Identities=9% Similarity=0.067 Sum_probs=52.6
Q ss_pred CHHHHHHHHHhCCCcEEEEeCC---------ChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCC
Q 036267 11 GLDNVKKWVEGCGLKRAAVTNS---------PRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKD 81 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s~~---------~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 81 (145)
.+.++++.|.++|+++.+++.. ....+..+.+.+.-.... .++. ++ ..+..+..++..
T Consensus 261 ~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~-~vi~-~~-----~~~~e~~~iIs~------ 327 (426)
T PRK10017 261 AFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARY-HVVM-DE-----LNDLEMGKILGA------ 327 (426)
T ss_pred HHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcccccce-eEec-CC-----CChHHHHHHHhh------
Confidence 3557788888889999999853 223344555554311000 1111 11 112233344332
Q ss_pred cEEEEecCHHhHHHHHhcCCEEEEEcCC
Q 036267 82 HTFVFEDSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 82 ~~~~iGD~~~Di~~a~~~G~~~i~v~~g 109 (145)
--++||-.++-.-.|...|++++++.+.
T Consensus 328 ~dl~ig~RlHa~I~a~~~gvP~i~i~Y~ 355 (426)
T PRK10017 328 CELTVGTRLHSAIISMNFGTPAIAINYE 355 (426)
T ss_pred CCEEEEecchHHHHHHHcCCCEEEeeeh
Confidence 2379999999999999999999999886
No 318
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=59.30 E-value=59 Score=22.82 Aligned_cols=42 Identities=10% Similarity=0.034 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEe--cCHHhHHH-HHhcCCEEEEEcC
Q 036267 64 PFPDPYLKAIEILNVSKDHTFVFE--DSVSGIKA-GVAADLHVVGLAT 108 (145)
Q Consensus 64 p~~~~~~~~~~~~~~~~~~~~~iG--D~~~Di~~-a~~~G~~~i~v~~ 108 (145)
+..+.+..+.+..+ -.++..| .+..|+.. ..+.|+..+.+.+
T Consensus 184 ~~~~~~~~i~~~~~---ipvia~GGi~s~~di~~~l~~~gadgV~vg~ 228 (232)
T TIGR03572 184 YDLELIKTVSDAVS---IPVIALGGAGSLDDLVEVALEAGASAVAAAS 228 (232)
T ss_pred CCHHHHHHHHhhCC---CCEEEECCCCCHHHHHHHHHHcCCCEEEEeh
Confidence 45667777777654 3488888 45579998 8889999888864
No 319
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=59.04 E-value=45 Score=23.59 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecC
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGD 57 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~ 57 (145)
.+++-..+..|.+++..++++|..+.+.+...-++.|+. |..+.+..
T Consensus 92 ~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~--~pw~Ss~g 138 (211)
T PF05988_consen 92 ADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWT--FPWYSSYG 138 (211)
T ss_pred HhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCC--ceEEEcCC
Confidence 345556788999999999999999999999999999997 66655543
No 320
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=59.02 E-value=57 Score=22.49 Aligned_cols=84 Identities=7% Similarity=-0.033 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCc----ccCCCCChHH---HHHHHHHcCCCCCcEE
Q 036267 12 LDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDE----CERAKPFPDP---YLKAIEILNVSKDHTF 84 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~----~~~~kp~~~~---~~~~~~~~~~~~~~~~ 84 (145)
+.++++.+++.|+++++---+....-...+..+.. +.+--... .....-.... +...++.++ -.++
T Consensus 134 ~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~----d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~---~~vi 206 (240)
T cd01948 134 ALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPV----DYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLG---LKVV 206 (240)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCCC----CEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCC---CeEE
Confidence 78899999999999998543322222233443322 22211110 0000011222 333333444 3577
Q ss_pred EEe-cCHHhHHHHHhcCCE
Q 036267 85 VFE-DSVSGIKAGVAADLH 102 (145)
Q Consensus 85 ~iG-D~~~Di~~a~~~G~~ 102 (145)
.-| ++..+...+++.|+.
T Consensus 207 a~gVe~~~~~~~~~~~gi~ 225 (240)
T cd01948 207 AEGVETEEQLELLRELGCD 225 (240)
T ss_pred EEecCCHHHHHHHHHcCCC
Confidence 777 888999999999985
No 321
>PRK06267 hypothetical protein; Provisional
Probab=58.97 E-value=78 Score=24.05 Aligned_cols=127 Identities=13% Similarity=0.148 Sum_probs=67.6
Q ss_pred cccCCHHHHHHHHHhCCCcEE--EEe--CCChHHHHH---HHHHcCCcCc-cceeEecCcc---cCCCCChHHHHHHHHH
Q 036267 7 KALNGLDNVKKWVEGCGLKRA--AVT--NSPRANAEL---MITKLGLSGF-FEAIIIGDEC---ERAKPFPDPYLKAIEI 75 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~--i~s--~~~~~~~~~---~l~~~~l~~~-f~~i~~~~~~---~~~kp~~~~~~~~~~~ 75 (145)
..+....+.++.+++.|+++. ++. +...+.... .+..++++.. |-........ ....|.+..+.+++..
T Consensus 150 ~s~ed~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~ 229 (350)
T PRK06267 150 KPLDKIKEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSS 229 (350)
T ss_pred CCHHHHHHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHH
Confidence 346678889999999999843 343 333333333 3444554421 2222222222 2334566667766666
Q ss_pred cCC--CCCcEEEEe--cCHHhHHHHHhcCCEEEE--------Ec-CCCChHHhhccccceeecCCCChhHH
Q 036267 76 LNV--SKDHTFVFE--DSVSGIKAGVAADLHVVG--------LA-TRNPERLLLDAKASFIIKDYEDPKLW 133 (145)
Q Consensus 76 ~~~--~~~~~~~iG--D~~~Di~~a~~~G~~~i~--------v~-~g~~~~~~~~~~~~~~~~~l~e~~~~ 133 (145)
+.+ +..+++.-| |...++..+..+|+..+. .+ .|.+.++...+.......++.+++.+
T Consensus 230 ~Rl~lP~~~I~~~~~~~~l~~~~~~~~aGaN~i~~~p~~g~ylt~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (350)
T PRK06267 230 VRLNFPKIKIITGTWVDKLTNIGPLIMSGSNVITKFPLFSMYGTKEGKRVENEIRWTGRELYGTFTDLDVL 300 (350)
T ss_pred HHHHCCCCCcchhhHhHhcchhhHHhhcCcceeeccchhccCcccCCCCHHHHHHHhhhhhhcccccHHHh
Confidence 543 444443223 333566666778888773 11 23334444445555667777776544
No 322
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=58.82 E-value=17 Score=30.97 Aligned_cols=41 Identities=10% Similarity=-0.047 Sum_probs=34.6
Q ss_pred ccCcccCCHHHHHHHHHhC-CCcEEEEeCCChHHHHHHHHHc
Q 036267 4 EQLKALNGLDNVKKWVEGC-GLKRAAVTNSPRANAELMITKL 44 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~-g~~~~i~s~~~~~~~~~~l~~~ 44 (145)
..+.+.|++.++|++|.+. +-.++|+|+.+...++.++...
T Consensus 529 ~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~ 570 (797)
T PLN03063 529 MDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEY 570 (797)
T ss_pred ccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCC
Confidence 3466788999999999765 5789999999999999998753
No 323
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=58.80 E-value=63 Score=22.98 Aligned_cols=98 Identities=11% Similarity=0.018 Sum_probs=56.8
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEE
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVF 86 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 86 (145)
+.-+.-.++++.|++.|+++-+.-=.+..++....+ .|- .|+...+++-+.....|. ..+..+.+.+.....++-++
T Consensus 89 P~T~~Gl~Ai~~L~~~Gi~vn~T~ifs~~Qa~~Aa~-aGa-~yvsPyvgRi~d~g~D~~-~~i~~i~~~~~~~~~~tkIL 165 (222)
T PRK12656 89 PVTPAGLAAIKTLKAEGYHITATAIYTVFQGLLAIE-AGA-DYLAPYYNRMENLNIDSN-AVIGQLAEAIDRENSDSKIL 165 (222)
T ss_pred CCCHHHHHHHHHHHHCCCceEEeeeCCHHHHHHHHH-CCC-CEEecccchhhhcCCCHH-HHHHHHHHHHHhcCCCCEEE
Confidence 334445778899999999988766666566655444 454 454444444322222222 33444444443322345555
Q ss_pred ecCH---HhHHHHHhcCCEEEEEc
Q 036267 87 EDSV---SGIKAGVAADLHVVGLA 107 (145)
Q Consensus 87 GD~~---~Di~~a~~~G~~~i~v~ 107 (145)
+-|. ..+..+..+|++.+-+.
T Consensus 166 aAS~r~~~~v~~a~~~G~d~vTvp 189 (222)
T PRK12656 166 AASFKNVAQVNKAFALGAQAVTAG 189 (222)
T ss_pred EEecCCHHHHHHHHHcCCCEEecC
Confidence 5555 46777777899999884
No 324
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=58.80 E-value=31 Score=23.13 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=34.7
Q ss_pred CHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcccee
Q 036267 11 GLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAI 53 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i 53 (145)
+.++.+.++.+.|..++-+|..+....+.+.++.+|. |...
T Consensus 52 ~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~--f~LL 92 (157)
T COG1225 52 DFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT--FPLL 92 (157)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC--ceee
Confidence 3567788899999999999999999999999998886 5544
No 325
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=58.33 E-value=67 Score=23.14 Aligned_cols=81 Identities=11% Similarity=-0.005 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecCH--
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDSV-- 90 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~-- 90 (145)
.++++...+.|++++++-+. ...++...+.+.- .|=-.+.+..+ +.-. ++....+++..+-...++++||=+.
T Consensus 95 ~~ll~~~~~~~~~v~llG~~-~~v~~~a~~~l~~-~y~l~i~g~~~-Gyf~--~~e~~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 95 EALMARAGKEGTPVFLVGGK-PEVLAQTEAKLRT-QWNVNIVGSQD-GYFT--PEQRQALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred HHHHHHHHhcCCeEEEECCC-HHHHHHHHHHHHH-HhCCEEEEEeC-CCCC--HHHHHHHHHHHHhcCCCEEEEECCCcH
Confidence 45566667788899998444 3444444333221 12011222222 2222 3344556666666667788888443
Q ss_pred HhHHHHHh
Q 036267 91 SGIKAGVA 98 (145)
Q Consensus 91 ~Di~~a~~ 98 (145)
..+-..+.
T Consensus 170 QE~~~~~~ 177 (243)
T PRK03692 170 QEIFMRDC 177 (243)
T ss_pred HHHHHHHH
Confidence 35554443
No 326
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=58.32 E-value=17 Score=23.19 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=24.7
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCCh
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPR 34 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~ 34 (145)
..+|-+.++++++.+.|.++++|..+..
T Consensus 59 ~~~~~l~~~~~~a~e~GVk~yvCe~s~~ 86 (120)
T COG2044 59 PNFPPLEELIKQAIEAGVKIYVCEQSLK 86 (120)
T ss_pred CCCCCHHHHHHHHHHcCCEEEEEcchhh
Confidence 4679999999999999999999987743
No 327
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=58.17 E-value=95 Score=24.83 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=23.8
Q ss_pred CCCcEEEEecCHHhHHHHHh---cCCEEEEEcC
Q 036267 79 SKDHTFVFEDSVSGIKAGVA---ADLHVVGLAT 108 (145)
Q Consensus 79 ~~~~~~~iGD~~~Di~~a~~---~G~~~i~v~~ 108 (145)
..-++++||-++..+.+|.. .|.+++.+..
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 34589999999999988876 4778777753
No 328
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=57.80 E-value=25 Score=22.13 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=13.7
Q ss_pred HHHHHHHhCCCcEEEEeCCChHHHHHHHHHcC
Q 036267 14 NVKKWVEGCGLKRAAVTNSPRANAELMITKLG 45 (145)
Q Consensus 14 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~ 45 (145)
+..+++.+.|+.++.+|......+...++..+
T Consensus 48 ~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 48 DLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 33344444444444444444444444444433
No 329
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=57.46 E-value=61 Score=22.37 Aligned_cols=97 Identities=16% Similarity=0.076 Sum_probs=54.5
Q ss_pred HHHHHHhCCCcEEEEeCC-------------ChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCC
Q 036267 15 VKKWVEGCGLKRAAVTNS-------------PRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKD 81 (145)
Q Consensus 15 ~l~~l~~~g~~~~i~s~~-------------~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 81 (145)
++..+.+.|+.+..++.. ..+.++...+.+|+....-.+ ..+. .-....+...+++..-..-
T Consensus 15 al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~-~~~~----e~~~~~l~~~l~~~~~~g~ 89 (194)
T cd01994 15 ALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEI-SGEE----EDEVEDLKELLRKLKEEGV 89 (194)
T ss_pred HHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeC-CCCc----hHHHHHHHHHHHHHHHcCC
Confidence 345666788776555422 234556666777876322111 0100 0011233334444332235
Q ss_pred cEEEEecCHHhHH------HHHhcCCEEEEEcCCCChHHhh
Q 036267 82 HTFVFEDSVSGIK------AGVAADLHVVGLATRNPERLLL 116 (145)
Q Consensus 82 ~~~~iGD~~~Di~------~a~~~G~~~i~v~~g~~~~~~~ 116 (145)
+.++.||...|.+ .+.++|+..+.=.|+.+++++.
T Consensus 90 ~~vv~G~i~sd~~~~~~e~~~~~~gl~~~~PLW~~~~~~ll 130 (194)
T cd01994 90 DAVVFGAILSEYQRTRVERVCERLGLEPLAPLWGRDQEELL 130 (194)
T ss_pred CEEEECccccHHHHHHHHHHHHHcCCEEEecccCCCHHHHH
Confidence 6899999987654 4566899999999997665543
No 330
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=57.33 E-value=14 Score=23.01 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCC
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSP 33 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~ 33 (145)
+.+.+.++.++++|.+++.+|+..
T Consensus 57 ~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 57 EETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 467788889999999999999764
No 331
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=56.99 E-value=69 Score=22.88 Aligned_cols=23 Identities=4% Similarity=0.131 Sum_probs=18.1
Q ss_pred cccCCHHHHHHHHHhCCCcEEEE
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAV 29 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~ 29 (145)
++.+...++.+.|++.|.....+
T Consensus 10 Rp~~~~~~l~~~l~~~G~~~~~~ 32 (255)
T PRK05752 10 RPAEECAALAASLAEAGIFSSSL 32 (255)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEc
Confidence 45677788888888888887776
No 332
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=56.73 E-value=16 Score=26.46 Aligned_cols=28 Identities=7% Similarity=-0.027 Sum_probs=24.3
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCCh
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPR 34 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~ 34 (145)
+-||+.+++++.|+++|+++++..+...
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 3589999999999999999999887653
No 333
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=56.67 E-value=40 Score=23.15 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=27.4
Q ss_pred HHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcC
Q 036267 15 VKKWVEGCGLKRAAVTNSPRANAELMITKLGLSG 48 (145)
Q Consensus 15 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~ 48 (145)
+-..|...|++++++|.. ...++.+.++|+..
T Consensus 108 l~~~L~~~g~~w~vfTaT--~~lr~~~~rlgl~~ 139 (179)
T PF12261_consen 108 LAQLLAQQGFEWVVFTAT--RQLRNLFRRLGLPP 139 (179)
T ss_pred HHHHHHHCCCCEEEEeCC--HHHHHHHHHcCCCc
Confidence 346778999999999999 78899999999874
No 334
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=56.56 E-value=46 Score=24.36 Aligned_cols=87 Identities=10% Similarity=0.058 Sum_probs=50.8
Q ss_pred CHHHHHHHHHh------CCCcEEEEeCCChHHHHHHHHHc-CCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcE
Q 036267 11 GLDNVKKWVEG------CGLKRAAVTNSPRANAELMITKL-GLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 11 g~~~~l~~l~~------~g~~~~i~s~~~~~~~~~~l~~~-~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 83 (145)
.+...|.+|++ .-++++++|..+....++.++.+ .|.-.+|-.+.- .+-++..+ ++.++ .-
T Consensus 168 ~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~RvI~TLr~Wgv~vDEafFL----gG~~K~~v----L~~~~----ph 235 (264)
T PF06189_consen 168 DFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERVIRTLRSWGVRVDEAFFL----GGLPKGPV----LKAFR----PH 235 (264)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHHHHHHHHcCCcHhHHHHh----CCCchhHH----HHhhC----CC
Confidence 34444555543 34889999977655555554433 133234433221 12222222 33333 24
Q ss_pred EEEecCHHhHHHHHhcCCEEEEEcCCC
Q 036267 84 FVFEDSVSGIKAGVAADLHVVGLATRN 110 (145)
Q Consensus 84 ~~iGD~~~Di~~a~~~G~~~i~v~~g~ 110 (145)
+|++|...-++.|. .++++..|..|.
T Consensus 236 IFFDDQ~~H~~~a~-~~vps~hVP~gv 261 (264)
T PF06189_consen 236 IFFDDQDGHLESAS-KVVPSGHVPYGV 261 (264)
T ss_pred EeecCchhhhhHhh-cCCCEEeccCCc
Confidence 89999999999998 789999998774
No 335
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=56.48 E-value=19 Score=30.87 Aligned_cols=69 Identities=12% Similarity=0.055 Sum_probs=46.0
Q ss_pred HHHHHHHH---HcCCCCCcEEEEecCHHhHHHHHhcCCE-----------EEEEcCCCChHHhhccccceeecCCCChhH
Q 036267 67 DPYLKAIE---ILNVSKDHTFVFEDSVSGIKAGVAADLH-----------VVGLATRNPERLLLDAKASFIIKDYEDPKL 132 (145)
Q Consensus 67 ~~~~~~~~---~~~~~~~~~~~iGD~~~Di~~a~~~G~~-----------~i~v~~g~~~~~~~~~~~~~~~~~l~e~~~ 132 (145)
..+..+++ .+|..++.+++|||+.+|..+-+.++-. .+.|.-|. ....+.+.+++..| +
T Consensus 765 ~Al~~Ll~~~~~~g~~~d~vl~~GDD~nDedMF~~~~~~~~g~~~~~~~~~~~v~VG~-----~~S~A~y~L~d~~e--V 837 (854)
T PLN02205 765 LVAKRLLSIMQERGMLPDFVLCIGDDRSDEDMFEVITSSMAGPSIAPRAEVFACTVGQ-----KPSKAKYYLDDTAE--I 837 (854)
T ss_pred HHHHHHHHHHHhcCCCcccEEEEcCCccHHHHHHHhhhhccCCcccccccceeEEECC-----CCccCeEecCCHHH--H
Confidence 44455553 3588889999999999999998877521 23333342 12457888999988 4
Q ss_pred HHHhhhhccC
Q 036267 133 WAALEELDMK 142 (145)
Q Consensus 133 ~~~~~~~~~~ 142 (145)
..+++.+..-
T Consensus 838 ~~lL~~L~~~ 847 (854)
T PLN02205 838 VRLMQGLASV 847 (854)
T ss_pred HHHHHHHHhc
Confidence 6666666543
No 336
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=56.38 E-value=14 Score=22.71 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc
Q 036267 12 LDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF 50 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f 50 (145)
+.++.+.++.+|.++.++.-. ..+...++..|+...+
T Consensus 69 L~~~~~~~~~~g~~~~l~~~~--~~v~~~l~~~~~~~~~ 105 (117)
T PF01740_consen 69 LVDIIKELRRRGVQLVLVGLN--PDVRRILERSGLIDFI 105 (117)
T ss_dssp HHHHHHHHHHTTCEEEEESHH--HHHHHHHHHTTGHHHS
T ss_pred HHHHHHHHHHCCCEEEEEECC--HHHHHHHHHcCCChhc
Confidence 567788899999999888765 7788889999988777
No 337
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.10 E-value=33 Score=20.08 Aligned_cols=21 Identities=10% Similarity=0.253 Sum_probs=14.2
Q ss_pred HHHHHHHHHhCCCcEEEEeCC
Q 036267 12 LDNVKKWVEGCGLKRAAVTNS 32 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~ 32 (145)
..++++.|++.|+++.+.|++
T Consensus 55 ~~~i~~~L~~~G~~~~~~~~~ 75 (85)
T cd04906 55 LAELLEDLKSAGYEVVDLSDD 75 (85)
T ss_pred HHHHHHHHHHCCCCeEECCCC
Confidence 566667777777776666655
No 338
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=56.03 E-value=14 Score=21.13 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHhCCCcEEEEe
Q 036267 10 NGLDNVKKWVEGCGLKRAAVT 30 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s 30 (145)
+.+.++++.++++|.+++.+|
T Consensus 61 ~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 61 EELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 568889999999999999998
No 339
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=55.86 E-value=78 Score=23.12 Aligned_cols=101 Identities=12% Similarity=0.161 Sum_probs=59.7
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc---------------cCCCCCh-H
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC---------------ERAKPFP-D 67 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~---------------~~~kp~~-~ 67 (145)
.++.-.+...++.+.+.+.|-++++.++.. .+..+.......+++-.++..-+. ..+-|.. +
T Consensus 109 d~~~~V~d~~ea~~~~~~~~~rVflt~G~~--~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~ 186 (257)
T COG2099 109 DNWIEVADIEEAAEAAKQLGRRVFLTTGRQ--NLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEE 186 (257)
T ss_pred CceEEecCHHHHHHHHhccCCcEEEecCcc--chHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChH
Confidence 445567788999999998887888888773 333333333344455444432221 1111222 2
Q ss_pred HHHHHHHHcCCCCCcEEEEecC------HHhHHHHHhcCCEEEEEcCC
Q 036267 68 PYLKAIEILNVSKDHTFVFEDS------VSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~iGD~------~~Di~~a~~~G~~~i~v~~g 109 (145)
+=..++++++++ +++-=|| .-=+++|.+.|++++.|.+.
T Consensus 187 ~n~all~q~~id---~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 187 DNKALLEQYRID---VVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHHHHHhCCC---EEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 224455555643 5544333 34699999999999999755
No 340
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=55.63 E-value=19 Score=20.90 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=34.2
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcCC
Q 036267 61 RAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAADL 101 (145)
Q Consensus 61 ~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G~ 101 (145)
..-|....++.+++++.+++..+..|.+.--.|..++.+|-
T Consensus 24 E~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGn 64 (82)
T cd01766 24 ESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGN 64 (82)
T ss_pred ccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccc
Confidence 34467788999999999999999988887788888888873
No 341
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=55.50 E-value=13 Score=26.49 Aligned_cols=38 Identities=5% Similarity=-0.140 Sum_probs=28.6
Q ss_pred cccCcccCCHHHHHHHHHhC-CCcEEEEeCCChHHHHHH
Q 036267 3 SEQLKALNGLDNVKKWVEGC-GLKRAAVTNSPRANAELM 40 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~-g~~~~i~s~~~~~~~~~~ 40 (145)
+....+.|++.+.|++|.+. +..++|+|+.+...+...
T Consensus 21 p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~~~~~~~ 59 (244)
T TIGR00685 21 PDAAVVSDRLLTILQKLAARPHNAIWIISGRKFLEKWLG 59 (244)
T ss_pred CcccCCCHHHHHHHHHHHhCCCCeEEEEECCChhhcccc
Confidence 34566789999999999776 456789999976555543
No 342
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=55.48 E-value=16 Score=21.38 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=20.1
Q ss_pred CCCcEEEEecCH-Hh----HHHHHhcCCEEEEEcCC
Q 036267 79 SKDHTFVFEDSV-SG----IKAGVAADLHVVGLATR 109 (145)
Q Consensus 79 ~~~~~~~iGD~~-~D----i~~a~~~G~~~i~v~~g 109 (145)
-|.++++||-|. +. |.+|..+|+.+++|...
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 467899999886 44 56777889999999754
No 343
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=55.42 E-value=22 Score=22.06 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCChHHH
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPRANA 37 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~~~~ 37 (145)
....+.++.++++|.+++.+|+.....+
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCch
Confidence 4567888899999999999997754433
No 344
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=55.33 E-value=79 Score=23.00 Aligned_cols=94 Identities=10% Similarity=0.021 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHhCCCcEEE-EeCCC-hHHHHHHHHHcCCcCccceeEecCc-ccC--CCCC-hHHHHHHHHHcCCCCCcE
Q 036267 10 NGLDNVKKWVEGCGLKRAA-VTNSP-RANAELMITKLGLSGFFEAIIIGDE-CER--AKPF-PDPYLKAIEILNVSKDHT 83 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i-~s~~~-~~~~~~~l~~~~l~~~f~~i~~~~~-~~~--~kp~-~~~~~~~~~~~~~~~~~~ 83 (145)
+...++++.+++.|+..+. +|..+ .+.++.+.+. ..-|-++++... ++. ..|. ...+...+++.. +.-
T Consensus 129 ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~---s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~---~~p 202 (258)
T PRK13111 129 EEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASH---ASGFVYYVSRAGVTGARSADAADLAELVARLKAHT---DLP 202 (258)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh---CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC---CCc
Confidence 4555666666666655555 55444 3444444443 222222222222 122 2221 122333333322 233
Q ss_pred EEEecCH---HhHHHHHhcCCEEEEEcCCC
Q 036267 84 FVFEDSV---SGIKAGVAADLHVVGLATRN 110 (145)
Q Consensus 84 ~~iGD~~---~Di~~a~~~G~~~i~v~~g~ 110 (145)
+++|=+. .|+..+... ++.+.|.+..
T Consensus 203 v~vGfGI~~~e~v~~~~~~-ADGviVGSai 231 (258)
T PRK13111 203 VAVGFGISTPEQAAAIAAV-ADGVIVGSAL 231 (258)
T ss_pred EEEEcccCCHHHHHHHHHh-CCEEEEcHHH
Confidence 4456544 577777764 7777776553
No 345
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=55.17 E-value=35 Score=24.17 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=22.4
Q ss_pred ccCC-HHHHHHHHHhCCCcEEEEeCCCh
Q 036267 8 ALNG-LDNVKKWVEGCGLKRAAVTNSPR 34 (145)
Q Consensus 8 ~~~g-~~~~l~~l~~~g~~~~i~s~~~~ 34 (145)
+.++ +.++++.+++.|+.+.+.||+..
T Consensus 83 l~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 83 LQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 3555 46899999999999999999974
No 346
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=55.13 E-value=16 Score=24.47 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCChHHHH
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPRANAE 38 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~~~~~ 38 (145)
+.+.++++.++++|.+++.+|+.....+.
T Consensus 86 ~~~i~~~~~ak~~g~~ii~IT~~~~s~la 114 (179)
T TIGR03127 86 ESLVTVAKKAKEIGATVAAITTNPESTLG 114 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 46788899999999999999987644333
No 347
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=54.76 E-value=46 Score=20.12 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcC
Q 036267 14 NVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSG 48 (145)
Q Consensus 14 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~ 48 (145)
++.++++.+|..+.++.-+ ..+...++..|+..
T Consensus 64 ~~~~~~~~~g~~l~l~g~~--~~v~~~l~~~gl~~ 96 (109)
T cd07041 64 RLARALRLLGARTILTGIR--PEVAQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHcCCeEEEEeCC--HHHHHHHHHhCCCh
Confidence 3444555555555555444 44455555555543
No 348
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=54.38 E-value=35 Score=20.82 Aligned_cols=36 Identities=17% Similarity=0.039 Sum_probs=24.0
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHH
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMIT 42 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~ 42 (145)
++.-|..+++..+++...+++++++...+.....++
T Consensus 16 kl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~ 51 (99)
T PRK01018 16 KVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIE 51 (99)
T ss_pred CEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHH
Confidence 456677788888877667777777665555554444
No 349
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=54.34 E-value=16 Score=24.58 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCC
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSP 33 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~ 33 (145)
+.+.++++.++++|.+++.+|+..
T Consensus 115 ~~~i~~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 115 PNVLKALEAAKERGMKTIALTGRD 138 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 567888899999999999999874
No 350
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=54.15 E-value=39 Score=20.77 Aligned_cols=38 Identities=13% Similarity=-0.016 Sum_probs=31.9
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHc
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKL 44 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~ 44 (145)
+..=|.++.++.++.-.-+++|+..+.+...+..++..
T Consensus 19 kvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyY 56 (100)
T COG1911 19 KVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEYY 56 (100)
T ss_pred CEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHH
Confidence 34558899999999888899999888888888888876
No 351
>PRK08005 epimerase; Validated
Probab=54.03 E-value=75 Score=22.38 Aligned_cols=95 Identities=9% Similarity=0.049 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCC--ChHHHHHHHHHcCCcCccceeEecC-cccCCCCChHHHHHHHHHcCCCCCcEEEE
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNS--PRANAELMITKLGLSGFFEAIIIGD-ECERAKPFPDPYLKAIEILNVSKDHTFVF 86 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~--~~~~~~~~l~~~~l~~~f~~i~~~~-~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 86 (145)
+...++|+.+++.|.+.++.=|- +.+.++..+.... ++- +.+.+ .....+=.+.++.++.+-....++.-+-|
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD---~Vl-vMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~V 168 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLD---ALM-IMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWA 168 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcC---EEE-EEEecCCCccceecHHHHHHHHHHHHhcccCCEEE
Confidence 46788999999999999998654 4566666666432 111 22222 22333334566666654333322223777
Q ss_pred ecCHH--hHHHHHhcCCEEEEEcC
Q 036267 87 EDSVS--GIKAGVAADLHVVGLAT 108 (145)
Q Consensus 87 GD~~~--Di~~a~~~G~~~i~v~~ 108 (145)
+-+.+ -+....++|+..+-+.+
T Consensus 169 DGGI~~~~i~~l~~aGad~~V~Gs 192 (210)
T PRK08005 169 DGGITLRAARLLAAAGAQHLVIGR 192 (210)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECh
Confidence 77774 67778889998766643
No 352
>PRK08304 stage V sporulation protein AD; Validated
Probab=54.02 E-value=39 Score=25.67 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=41.9
Q ss_pred CCcCccceeEecCcccCC---CCC----hHHHHHHHHHcCCCCC--cEEEEecCHH----hHHHHHhcCCEEEEEcCC
Q 036267 45 GLSGFFEAIIIGDECERA---KPF----PDPYLKAIEILNVSKD--HTFVFEDSVS----GIKAGVAADLHVVGLATR 109 (145)
Q Consensus 45 ~l~~~f~~i~~~~~~~~~---kp~----~~~~~~~~~~~~~~~~--~~~~iGD~~~----Di~~a~~~G~~~i~v~~g 109 (145)
.|.++||.++...-.+.. |.. .+....++++.|++++ +.+++||..+ -...++..|+++..+...
T Consensus 33 pl~~~fd~~~~d~~~Ge~swEkAeseLa~eAa~~ALekAGI~~~DID~lI~Gdll~Q~~sAs~vA~~LGIPa~dV~gA 110 (337)
T PRK08304 33 PLGKYFDKILDDDYCGEKSWEKAERKMMEDAIQQALQKANLKKSDIDYLLAGDLLNQIISANFAARELGIPFLGLYGA 110 (337)
T ss_pred CChhhCCeEecccccCCcCccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCcchHHHHHHHhCCcEEEEecc
Confidence 378899988765544432 222 2445667777788776 4788888753 223556778887777654
No 353
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine.
Probab=53.91 E-value=98 Score=23.68 Aligned_cols=111 Identities=11% Similarity=0.133 Sum_probs=57.6
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCCh------HHHHHHHHHcCCCCCcEEEE
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFP------DPYLKAIEILNVSKDHTFVF 86 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~------~~~~~~~~~~~~~~~~~~~i 86 (145)
.++|++|+++|+.++-+|=. .|+.. |-.| ..+++...++++ ..-...++...-...+++.|
T Consensus 188 ~~ll~~l~~kGv~~a~vTLH-----------VG~GT-F~PV-~~e~i~~H~mH~E~~~v~~~ta~~i~~ak~~G~RIiAV 254 (344)
T TIGR00113 188 EELLEKLKAKGVQYAFITLH-----------VGAGT-FRPV-EADNIEDHVMHAEYYEVPQETVEALNKTRENGGRIIAV 254 (344)
T ss_pred HHHHHHHHHCCCeEEEEEEe-----------ecCCC-CcCc-cccccccCCcccEEEEECHHHHHHHHHHHHcCCeEEEE
Confidence 56788888888888888732 12211 1111 111111222221 22223333333345689999
Q ss_pred ecCH-HhHHHHHhc---------CCEEEEEcCCCChHHhhccccceeecCCCCh--hHHHHhhhhcc
Q 036267 87 EDSV-SGIKAGVAA---------DLHVVGLATRNPERLLLDAKASFIIKDYEDP--KLWAALEELDM 141 (145)
Q Consensus 87 GD~~-~Di~~a~~~---------G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~--~~~~~~~~~~~ 141 (145)
|-+. .-++.|... |+.-++|..|+.-+ -.+..+.+|+.- ....+++.+.+
T Consensus 255 GTT~vRaLEsa~~~~~g~~~~~~G~T~lfI~Pgy~f~-----vvD~LlTNFHlPkSTLlmLVsAFaG 316 (344)
T TIGR00113 255 GTTSVRSLESAAQEADGLIEPFFGDTSIFIYPGYQFK-----VVDGLITNFHLPKSSLIMLVSALAG 316 (344)
T ss_pred ccceehhehhhhccCCCccccCCcccCeEECCCCCCe-----EeceeeecCcCCccHHHHHHHHhCC
Confidence 9887 788887542 44456666554321 245566666653 24555555543
No 354
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=53.41 E-value=85 Score=22.80 Aligned_cols=28 Identities=4% Similarity=0.087 Sum_probs=20.0
Q ss_pred cCcccCCHHHHHHHHHh---CCCcEEEEeCC
Q 036267 5 QLKALNGLDNVKKWVEG---CGLKRAAVTNS 32 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~---~g~~~~i~s~~ 32 (145)
.+...+...++.+.+.+ .+-++.+.|+.
T Consensus 108 ~~~~v~~~~ea~~~~~~~~~~~~~i~lttG~ 138 (256)
T TIGR00715 108 NIIEVPDIEEATRVAYQPYLRGKRVFLTAGA 138 (256)
T ss_pred CeEEeCCHHHHHHHhhhccccCCcEEEecCc
Confidence 44556778888888876 45577777776
No 355
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=53.40 E-value=42 Score=20.02 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcC
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSG 48 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~ 48 (145)
.++.++++++|..+.++.-. ......++..|+..
T Consensus 61 ~~l~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~ 94 (100)
T cd06844 61 LERSRLAEAVGGQFVLTGIS--PAVRITLTESGLDK 94 (100)
T ss_pred HHHHHHHHHcCCEEEEECCC--HHHHHHHHHhCchh
Confidence 44556666676666666544 55666666666543
No 356
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=53.28 E-value=33 Score=24.02 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=26.9
Q ss_pred ccCC-HHHHHHHHHhCCCcEEEEeCCC----hHHHHHHHHH
Q 036267 8 ALNG-LDNVKKWVEGCGLKRAAVTNSP----RANAELMITK 43 (145)
Q Consensus 8 ~~~g-~~~~l~~l~~~g~~~~i~s~~~----~~~~~~~l~~ 43 (145)
+.++ +.++++.+++.|+++.+.||+. .+.+..+++.
T Consensus 78 l~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~ 118 (235)
T TIGR02493 78 LQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEY 118 (235)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHh
Confidence 4566 4589999999999999999994 3445555553
No 357
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=52.65 E-value=31 Score=24.95 Aligned_cols=40 Identities=15% Similarity=0.334 Sum_probs=32.2
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS 47 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 47 (145)
..||=..+=+.|++.|++++|+|..+....+..++.-|+.
T Consensus 72 a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~G 111 (277)
T PRK00994 72 AAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLG 111 (277)
T ss_pred CCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCc
Confidence 3466667777889999999999999888788888877754
No 358
>PLN02587 L-galactose dehydrogenase
Probab=52.58 E-value=81 Score=23.31 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=26.1
Q ss_pred cCCHHHHHHHHHhCC-CcEEEEeCCChHHHHHHHHH
Q 036267 9 LNGLDNVKKWVEGCG-LKRAAVTNSPRANAELMITK 43 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g-~~~~i~s~~~~~~~~~~l~~ 43 (145)
..++.++|++++++| ++.+-+||.+...++..++.
T Consensus 130 ~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~ 165 (314)
T PLN02587 130 VNETIPALQKLKESGKVRFIGITGLPLAIFTYVLDR 165 (314)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHh
Confidence 346789999999999 66677888776666666554
No 359
>PRK13937 phosphoheptose isomerase; Provisional
Probab=52.04 E-value=19 Score=24.59 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCC
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSP 33 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~ 33 (145)
+.+.++++.++++|.+++.+|+..
T Consensus 120 ~~~~~~~~~ak~~g~~~I~iT~~~ 143 (188)
T PRK13937 120 PNVLAALEKARELGMKTIGLTGRD 143 (188)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCC
Confidence 456777777788888888887754
No 360
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=51.99 E-value=33 Score=25.43 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=39.8
Q ss_pred cCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHh------cCCEEEEEcCCC
Q 036267 60 ERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVA------ADLHVVGLATRN 110 (145)
Q Consensus 60 ~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~------~G~~~i~v~~g~ 110 (145)
...-|.++.|...+.++|+..+.+|++=|..+...+++. .|..-|.|..|+
T Consensus 69 ~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG 125 (285)
T COG2897 69 PHMLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGG 125 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCC
Confidence 356688899999999999998888877776655555544 788888888774
No 361
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=51.96 E-value=15 Score=24.29 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcc
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDEC 59 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~ 59 (145)
+.++.++=+.|++.|+++.+..+.+.+.+..+.+.+++ +.|+...+.
T Consensus 52 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~~ 98 (165)
T PF00875_consen 52 LESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGA----TAVYFNEEY 98 (165)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTE----SEEEEE---
T ss_pred HHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCc----CeeEecccc
Confidence 44566777888999999999999988888888888774 556665554
No 362
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=51.63 E-value=1.1e+02 Score=23.46 Aligned_cols=111 Identities=13% Similarity=0.150 Sum_probs=58.6
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCCh------HHHHHHHHHcCCCCCcEEEE
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFP------DPYLKAIEILNVSKDHTFVF 86 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~------~~~~~~~~~~~~~~~~~~~i 86 (145)
.++|++|+++|+.++-+|=. .|+.. |-.| ..+++...++++ ..-...++...-...+++.|
T Consensus 187 ~~ll~~L~~kGv~~a~vTLH-----------VG~GT-F~PV-~~edi~~H~mH~E~~~I~~~ta~~i~~ak~~G~rIiAV 253 (342)
T PRK00147 187 EELLEKLKAKGVEIAFVTLH-----------VGAGT-FRPV-RVEDIEEHKMHSEWYEVPQETADAINAAKARGGRVIAV 253 (342)
T ss_pred HHHHHHHHHCCCcEEEEEEe-----------ecCCC-CcCc-ccCccccCCcccEEEEECHHHHHHHHHHHHcCCeEEEE
Confidence 56788888888888888732 12221 1111 111222222222 22223333333345689999
Q ss_pred ecCH-HhHHHHHhc--------CCEEEEEcCCCChHHhhccccceeecCCCCh--hHHHHhhhhcc
Q 036267 87 EDSV-SGIKAGVAA--------DLHVVGLATRNPERLLLDAKASFIIKDYEDP--KLWAALEELDM 141 (145)
Q Consensus 87 GD~~-~Di~~a~~~--------G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~--~~~~~~~~~~~ 141 (145)
|-+. .-++.|... |+.-+.|..|+.-+ -.+..+.+++.- +...+++.+.+
T Consensus 254 GTT~vRaLEsa~~~~g~~~~~~G~T~lfI~Pgy~f~-----vvD~LlTNFHlP~STLlmLVsAFaG 314 (342)
T PRK00147 254 GTTSVRTLESAARAGGELKPFSGWTDIFIYPGYRFK-----VVDALITNFHLPKSTLLMLVSAFAG 314 (342)
T ss_pred cccchhhHHHHHccCCccccCCcccceEECCCCCCe-----EeceeeecCcCCccHHHHHHHHhCC
Confidence 9887 799987542 45556666664321 245566666653 24555555543
No 363
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=51.60 E-value=1.1e+02 Score=23.53 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=22.4
Q ss_pred cCcccCCHHHHHHHHHhC-CCc-EEEEeCCCh
Q 036267 5 QLKALNGLDNVKKWVEGC-GLK-RAAVTNSPR 34 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~-g~~-~~i~s~~~~ 34 (145)
+--+.+++.++++.+++. |+. +.+.||+..
T Consensus 116 EPllr~dl~eli~~l~~~~gi~~i~itTNG~l 147 (373)
T PLN02951 116 EPTLRKDIEDICLQLSSLKGLKTLAMTTNGIT 147 (373)
T ss_pred CCcchhhHHHHHHHHHhcCCCceEEEeeCcch
Confidence 334577888999999886 775 778888853
No 364
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=51.11 E-value=92 Score=22.52 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=50.7
Q ss_pred CHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCccc---CCCCChHHHHHHHHHcCCCCCcEEEEe
Q 036267 11 GLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECE---RAKPFPDPYLKAIEILNVSKDHTFVFE 87 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~---~~kp~~~~~~~~~~~~~~~~~~~~~iG 87 (145)
...+.|++.++.|+.-+++.+.........++... .+..++.+-.+. ...-....+..+.+.+...+.+++.||
T Consensus 20 ~~~~~l~~a~~~gv~~~~~~~~~~~~~~~~~~l~~---~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~~~~~aIG 96 (258)
T PRK11449 20 DEEASLQRAAQAGVGKIIVPATEAENFARVLALAE---RYQPLYAALGLHPGMLEKHSDVSLDQLQQALERRPAKVVAVG 96 (258)
T ss_pred CHHHHHHHHHHCCCCEEEEeeCCHHHHHHHHHHHH---hCCCEEEEEeeCcCccccCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 57789999999997777666655555555554322 122233332221 111112334444333333454688887
Q ss_pred ----cCHH--------------hHHHHHhcCCEEEEEcCC
Q 036267 88 ----DSVS--------------GIKAGVAADLHVVGLATR 109 (145)
Q Consensus 88 ----D~~~--------------Di~~a~~~G~~~i~v~~g 109 (145)
|... =++.|.+.+.+.+.-..+
T Consensus 97 EiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~ 136 (258)
T PRK11449 97 EIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRR 136 (258)
T ss_pred ecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 5332 155677778775544444
No 365
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=51.11 E-value=89 Score=23.89 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=22.5
Q ss_pred HHHHHHHcCCCCCcEEEEecCHHhHH--HHHhcCCEEEEE
Q 036267 69 YLKAIEILNVSKDHTFVFEDSVSGIK--AGVAADLHVVGL 106 (145)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iGD~~~Di~--~a~~~G~~~i~v 106 (145)
...++++ .+++.+++|.|+..|=. +.-+.-.+..++
T Consensus 90 ld~vl~~--~~~~~~i~VsDGaeDE~vlPiIqSr~~V~sV 127 (344)
T PF04123_consen 90 LDEVLSK--FDPDSAIVVSDGAEDERVLPIIQSRVPVDSV 127 (344)
T ss_pred HHHHHHh--CCCCEEEEEecChhhhhhhHhhhccCceEEE
Confidence 3444443 45779999999998744 344444555555
No 366
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=50.71 E-value=79 Score=23.98 Aligned_cols=65 Identities=20% Similarity=0.196 Sum_probs=40.6
Q ss_pred CCcCccceeEecCcccCCCC---Ch----HHHHHHHHHcCCCCC--cEEEEecCHH----hHHHHHhcCCEEEEEcCC
Q 036267 45 GLSGFFEAIIIGDECERAKP---FP----DPYLKAIEILNVSKD--HTFVFEDSVS----GIKAGVAADLHVVGLATR 109 (145)
Q Consensus 45 ~l~~~f~~i~~~~~~~~~kp---~~----~~~~~~~~~~~~~~~--~~~~iGD~~~----Di~~a~~~G~~~i~v~~g 109 (145)
.|.++||.++...-.+...+ .. +..+.++++.|++++ +.+++||..+ --..++..|++...+...
T Consensus 27 pl~~~fd~~~~d~~~g~ks~EkAe~eLa~eAa~~ALekAGL~~~DID~IIvGdl~~Q~~~As~vA~~LGIP~fdV~~A 104 (327)
T TIGR02845 27 PLGDYFDKIYDDLYCGEDSWEKAERKLMEDAVNLALKKANLKKDDVDFFLAGDLLNQIITANFVARDLGIPFLGLYGA 104 (327)
T ss_pred CChhhCCEEEeccccCCcCcchhHHHHHHHHHHHHHHHcCCCHHHCCEEEEeCCCCcccHHHHHHHHhCCCEEEEecc
Confidence 37788998876544433222 21 345667777788777 6788998643 223557778877666544
No 367
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=50.10 E-value=43 Score=19.66 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=23.4
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHH
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMI 41 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 41 (145)
++.-|..+.+..+++...+++++.++..+.....+
T Consensus 11 kl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i 45 (82)
T PRK13602 11 SIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKV 45 (82)
T ss_pred CEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHH
Confidence 46678888888888766777777666544444443
No 368
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=50.07 E-value=46 Score=24.00 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS 47 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 47 (145)
.++++.++++|+++.+-|-+....++.+++.+|++
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn~~~~~~~l~~~~GVd 252 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVNTPTEKQYFAKTLNVP 252 (258)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHHHHHHHHhCCC
Confidence 46788888889999999987777777776646654
No 369
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=49.63 E-value=66 Score=21.76 Aligned_cols=41 Identities=10% Similarity=0.076 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHhCCCcEEEE-eCCChHHHHHHHHHcCCcCc
Q 036267 9 LNGLDNVKKWVEGCGLKRAAV-TNSPRANAELMITKLGLSGF 49 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~-s~~~~~~~~~~l~~~~l~~~ 49 (145)
.||..+-.++|+.+|+..++| |-+....+..+-+.++-.+.
T Consensus 64 vPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~~ 105 (171)
T KOG0541|consen 64 VPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLGANDH 105 (171)
T ss_pred CchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccce
Confidence 689999999999999776665 67777777777777765443
No 370
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=49.02 E-value=25 Score=26.29 Aligned_cols=24 Identities=0% Similarity=-0.086 Sum_probs=21.2
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEe
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVT 30 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s 30 (145)
+.||+..+++++|+++|+++++..
T Consensus 63 ~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 63 ERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEe
Confidence 468999999999999999988765
No 371
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=48.77 E-value=1.2e+02 Score=23.36 Aligned_cols=111 Identities=9% Similarity=0.110 Sum_probs=58.4
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCCh------HHHHHHHHHcCCCCCcEEEE
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFP------DPYLKAIEILNVSKDHTFVF 86 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~------~~~~~~~~~~~~~~~~~~~i 86 (145)
.++|++|+++|+.++-+|=. .|+.. |-.| ..+++...++++ ..-...+.+......+++.|
T Consensus 209 ~~ll~~L~~kGv~~a~vTLH-----------VG~GT-F~PV-~~e~i~~H~MH~E~~~I~~eta~~In~ak~~G~RIiAV 275 (366)
T PRK01424 209 KDILDKLKAKGIQTAFLTLH-----------VGAGT-FLPV-KTENIHEHKMHTEYCSITPETAEIINKAKQEGRRIIAV 275 (366)
T ss_pred HHHHHHHHHCCCeEEEEEEe-----------ecCCC-CcCc-cccccccCCccceEEEECHHHHHHHHHHHHcCCeEEEE
Confidence 57889999999999988832 12211 1111 111112222221 22223333333345789999
Q ss_pred ecCH-HhHHHHHhc-------CCEEEEEcCCCChHHhhccccceeecCCCCh--hHHHHhhhhcc
Q 036267 87 EDSV-SGIKAGVAA-------DLHVVGLATRNPERLLLDAKASFIIKDYEDP--KLWAALEELDM 141 (145)
Q Consensus 87 GD~~-~Di~~a~~~-------G~~~i~v~~g~~~~~~~~~~~~~~~~~l~e~--~~~~~~~~~~~ 141 (145)
|-+. .-++++.+. |..-++|..|+.- ...+..+.+++.- ....+++.+.+
T Consensus 276 GTT~vRaLEsa~~~g~~~~~~g~TdiFI~PGy~f-----~vvD~LlTNFHlPkSTLlmLVsAFaG 335 (366)
T PRK01424 276 GTTTLRTLESSCNNGIVKAGSFETDIFITPGFKF-----QTADMLLTNFHFPKSTLFMLICAFAG 335 (366)
T ss_pred ecceeeeehhhhcCCccccCCcccceEECCCCCC-----eEeceeeecCcCCccHHHHHHHHhCC
Confidence 9887 788887642 3345556555421 1255666666652 24555555543
No 372
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]. The Pet56 protein of Saccharomyces cerevisiae has been shown to be required for ribose methylation at a universally conserved nucleotide in the peptidyl transferase centre of the mitochondrial large ribosomal RNA (21S rRNA). Cells reduced in this activity were deficient in formation of functional large subunits of the mitochondrial ribosome. The Pet56 protein catalyzes the site-specific formation of 2'-O-methylguanosine on in vitro transcripts of both mitochondrial 21S rRNA and E. coli 23S rRNA providing evidence for an essential modified nucleotide in rRNA [].; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 3N4J_A 3N4K_A 1IPA_A 3ONP_A 3NK6_A 3NK7_A 3IC6_A 1GZ0_D 1MXI_A 1J85_A ....
Probab=48.60 E-value=18 Score=23.27 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=31.7
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccC
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECER 61 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~ 61 (145)
..++...++++.+++.|+.++..+....... .+.+....-.+++.|+.+.
T Consensus 59 ~~~~~~~~~l~~~~~~g~~i~~~~~~~~~~~-----~~~~~~~~~lv~G~E~~Gl 108 (142)
T PF00588_consen 59 RRVDDLEEALKDLKENGYTIVATSPGATPLY-----ELDFPKKVALVFGNESRGL 108 (142)
T ss_dssp EEESSHHHHHHHHHHTTEEEEEESTTSCEGG-----GSHTTSSEEEEEEBTTTBS
T ss_pred eeeehhhhhcccccccccccceeeecccccc-----ccccccceEEEEcCcCCCC
Confidence 4567888999999999988877776332222 2233444456666666543
No 373
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=48.57 E-value=34 Score=25.00 Aligned_cols=27 Identities=11% Similarity=-0.017 Sum_probs=22.5
Q ss_pred ccCCH-HHHHHHHHhCCCcEEEEeCCCh
Q 036267 8 ALNGL-DNVKKWVEGCGLKRAAVTNSPR 34 (145)
Q Consensus 8 ~~~g~-~~~l~~l~~~g~~~~i~s~~~~ 34 (145)
+.++. .++++.+++.|+.+.+.||+..
T Consensus 138 l~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 138 LQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred chHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 45664 6899999999999999999853
No 374
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=48.33 E-value=33 Score=24.90 Aligned_cols=26 Identities=19% Similarity=-0.013 Sum_probs=23.1
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCC
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSP 33 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~ 33 (145)
-++.+.++++.+++.|+.+++.||+.
T Consensus 97 q~e~~~~~~~~ake~Gl~~~l~TnG~ 122 (260)
T COG1180 97 QAEFALDLLRAAKERGLHVALDTNGF 122 (260)
T ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 36678899999999999999999984
No 375
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.31 E-value=26 Score=25.79 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=22.7
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCC
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNS 32 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~ 32 (145)
+.||+.++++++|+++|+++++...-
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 46899999999999999999987753
No 376
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=48.20 E-value=85 Score=21.31 Aligned_cols=90 Identities=12% Similarity=0.074 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCCcEEE--EeCCChHHHHHHHHHcCCcCccceeEe--cCcccC--CCCChHHHHHHHHHcCCCCCcEEE
Q 036267 12 LDNVKKWVEGCGLKRAA--VTNSPRANAELMITKLGLSGFFEAIII--GDECER--AKPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i--~s~~~~~~~~~~l~~~~l~~~f~~i~~--~~~~~~--~kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
..++++.+++.|+++++ ++..+.......+. .+.+ .+.. ..+... .....+.+..+.+. ..-.++.
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~-~~~d----~v~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~i~~ 163 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK-LGVD----IVILHRGIDAQAAGGWWPEDDLKKVKKL---LGVKVAV 163 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH-CCCC----EEEEcCcccccccCCCCCHHHHHHHHhh---cCCCEEE
Confidence 57788999999999986 56555555544333 3332 2221 111111 12334444444433 1233444
Q ss_pred E-ecCHHhHHHHHhcCCEEEEEcCC
Q 036267 86 F-EDSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 86 i-GD~~~Di~~a~~~G~~~i~v~~g 109 (145)
. |=+..++..+.++|+..+.+.+.
T Consensus 164 ~GGI~~~~i~~~~~~Gad~vvvGsa 188 (202)
T cd04726 164 AGGITPDTLPEFKKAGADIVIVGRA 188 (202)
T ss_pred ECCcCHHHHHHHHhcCCCEEEEeeh
Confidence 4 34557899999999999888765
No 377
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=48.16 E-value=23 Score=23.84 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCChH
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPRA 35 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~~ 35 (145)
+.+.++++.++++|.+++.+|+....
T Consensus 89 ~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 89 SSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 56788899999999999999987544
No 378
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=48.07 E-value=91 Score=21.60 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=24.5
Q ss_pred EEEEecCHHhHHHHHhcCCEEEEEcCC
Q 036267 83 TFVFEDSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 83 ~~~iGD~~~Di~~a~~~G~~~i~v~~g 109 (145)
-++||.++...-.|...|++++++.+.
T Consensus 259 ~~~Is~RlH~~I~a~~~g~P~i~i~y~ 285 (286)
T PF04230_consen 259 DLVISMRLHGAILALSLGVPVIAISYD 285 (286)
T ss_pred CEEEecCCHHHHHHHHcCCCEEEEecC
Confidence 478999999999999999999999765
No 379
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=48.06 E-value=30 Score=30.05 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=34.4
Q ss_pred cCcccCCHHHHHHHHHhC-CCcEEEEeCCChHHHHHHHHHcC
Q 036267 5 QLKALNGLDNVKKWVEGC-GLKRAAVTNSPRANAELMITKLG 45 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~-g~~~~i~s~~~~~~~~~~l~~~~ 45 (145)
.+.+.|++.++|+.|.+. +-.++|+|+.+...++.++...+
T Consensus 620 ~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~ 661 (934)
T PLN03064 620 ELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFD 661 (934)
T ss_pred ccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCC
Confidence 445778999999999765 57899999999999999987643
No 380
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=48.02 E-value=47 Score=21.86 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHhCCC-cEEEEeCCChHHHHHHHHHcCC
Q 036267 10 NGLDNVKKWVEGCGL-KRAAVTNSPRANAELMITKLGL 46 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~~l 46 (145)
+...+..+++++.|. .++.+|..+....+.+.+..++
T Consensus 51 ~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 51 PGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred HHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 345566677777787 4777777777777777776665
No 381
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=47.96 E-value=77 Score=23.37 Aligned_cols=77 Identities=13% Similarity=0.084 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCC-cCcc-ceeEecCcccCCCCC----------------hHHHHH
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGL-SGFF-EAIIIGDECERAKPF----------------PDPYLK 71 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l-~~~f-~~i~~~~~~~~~kp~----------------~~~~~~ 71 (145)
..+.+.|..|+++|.+++++|++.-..-...+...+. ..-+ ..--+... ...|. ...|..
T Consensus 34 ~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~qa~aa~gq~~L~~~y~~ 111 (284)
T cd04256 34 ASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQL--KDMPQMELDGRACAAVGQSGLMALYEA 111 (284)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhcccccc--cCCcchhHHHHHHHHcccHHHHHHHHH
Confidence 3466778888899999999998876666666643321 1000 00000000 00111 355777
Q ss_pred HHHHcCCCCCcEEEEec
Q 036267 72 AIEILNVSKDHTFVFED 88 (145)
Q Consensus 72 ~~~~~~~~~~~~~~iGD 88 (145)
....+++.+.+++...+
T Consensus 112 ~f~~~~~~~~q~llt~~ 128 (284)
T cd04256 112 MFTQYGITVAQVLVTKP 128 (284)
T ss_pred HHHHcCCcHHHeeeecc
Confidence 88888999999865555
No 382
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=47.38 E-value=99 Score=21.85 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCC--ChHHHHHHHHHcCCcCccceeEecC-cccCCCCChHHHHHHHH---HcCC-CCC
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNS--PRANAELMITKLGLSGFFEAIIIGD-ECERAKPFPDPYLKAIE---ILNV-SKD 81 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~--~~~~~~~~l~~~~l~~~f~~i~~~~-~~~~~kp~~~~~~~~~~---~~~~-~~~ 81 (145)
-+...++|+.+++.|.+.+++-|- +.+.++..+...++ +- +.+.+ ..+..+--+..+..+.+ ...- ..+
T Consensus 92 ~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~---vl-vMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~ 167 (220)
T PRK08883 92 SEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDL---IL-LMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRD 167 (220)
T ss_pred cccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCe---EE-EEEecCCCCCceecHhHHHHHHHHHHHHHhcCCC
Confidence 356789999999999999998654 55666666665432 11 12222 22222223333333222 2111 111
Q ss_pred -cEEEEec-CHHhHHHHHhcCCEEEEEcCC
Q 036267 82 -HTFVFED-SVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 82 -~~~~iGD-~~~Di~~a~~~G~~~i~v~~g 109 (145)
.+.+.|- +...+....++|+..+.+.++
T Consensus 168 ~~I~vdGGI~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 168 IRLEIDGGVKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred eeEEEECCCCHHHHHHHHHcCCCEEEEeHH
Confidence 1333332 235888899999998877544
No 383
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=47.27 E-value=25 Score=26.30 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.9
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeC
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTN 31 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~ 31 (145)
+-||+.++++++|+++|+++++...
T Consensus 68 ~~FPdp~~mi~~Lh~~G~~~~~~i~ 92 (317)
T cd06594 68 ERYPGLDELIEELKARGIRVLTYIN 92 (317)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEec
Confidence 3689999999999999999987754
No 384
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=47.01 E-value=99 Score=21.72 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=51.7
Q ss_pred HHHHHHHHhCCCcEEEEeCCChH-HHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCC--CCcEEEEecC
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRA-NAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVS--KDHTFVFEDS 89 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~-~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~--~~~~~~iGD~ 89 (145)
...++.|+++ +++++++|.... .-...+.+. .....-.+-++..+ --+..+...+++++... .-+.++|...
T Consensus 31 e~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~-~g~~i~~v~TG~~C---H~da~m~~~ai~~l~~~~~~~Dll~iEs~ 105 (202)
T COG0378 31 EKTLRALKDE-YKIAVITGDIYTKEDADRLRKL-PGEPIIGVETGKGC---HLDASMNLEAIEELVLDFPDLDLLFIESV 105 (202)
T ss_pred HHHHHHHHhh-CCeEEEeceeechhhHHHHHhC-CCCeeEEeccCCcc---CCcHHHHHHHHHHHhhcCCcCCEEEEecC
Confidence 4456778777 999999998544 222334431 22222333332222 24567888888888642 2589998765
Q ss_pred HH-----hHHHHHhcCCEEEEEcCC
Q 036267 90 VS-----GIKAGVAADLHVVGLATR 109 (145)
Q Consensus 90 ~~-----Di~~a~~~G~~~i~v~~g 109 (145)
=| +-.-+-..++..+-++.|
T Consensus 106 GNL~~~~sp~L~d~~~v~VidvteG 130 (202)
T COG0378 106 GNLVCPFSPDLGDHLRVVVIDVTEG 130 (202)
T ss_pred cceecccCcchhhceEEEEEECCCC
Confidence 42 222223344455555555
No 385
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=46.88 E-value=70 Score=23.51 Aligned_cols=72 Identities=11% Similarity=0.176 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCc--------------ccCCCCChHHHHHHHHHcCC
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDE--------------CERAKPFPDPYLKAIEILNV 78 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~--------------~~~~kp~~~~~~~~~~~~~~ 78 (145)
..+.+.+.+.|+.+..+.. ...+=|.+|+.+. ...++-....+...++.+|+
T Consensus 41 ~~lve~l~~~gv~V~ll~~--------------~~~~Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE~~~~~~~~~~lgi 106 (267)
T COG1834 41 EALVEALEKNGVEVHLLPP--------------IEGLPDQVFTRDPGLVTGEGAVLARMGAPERRGEEEAIKETLESLGI 106 (267)
T ss_pred HHHHHHHHHCCCEEEEcCc--------------ccCCCcceEeccceeEecccEEEeccCChhhccCHHHHHHHHHHcCC
Confidence 4456666778888887772 2333355555442 23345567788888888886
Q ss_pred C-------------------CCcEEEEecCH-HhHHHHHh
Q 036267 79 S-------------------KDHTFVFEDSV-SGIKAGVA 98 (145)
Q Consensus 79 ~-------------------~~~~~~iGD~~-~Di~~a~~ 98 (145)
+ ..++++||.+. ++.+++..
T Consensus 107 ~i~~~~~~~~~eG~GD~l~~~~~~v~iG~s~RTn~egi~~ 146 (267)
T COG1834 107 PIYPRVEAGVFEGAGDVLMDGGDTVYIGYSFRTNLEGIEQ 146 (267)
T ss_pred cccccccCCCccccccEEEeCCcEEEEEeccccchHHHHH
Confidence 4 16678888888 57777665
No 386
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=46.69 E-value=23 Score=23.27 Aligned_cols=25 Identities=8% Similarity=0.101 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCCh
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPR 34 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~ 34 (145)
+.+.++++.++++|.+++.+|+.+.
T Consensus 93 ~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 93 KNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4577888888999999999988643
No 387
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=46.69 E-value=18 Score=26.71 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=25.2
Q ss_pred ccCcccCCHHHHHHHHHhCCCcEEEEeCCC
Q 036267 4 EQLKALNGLDNVKKWVEGCGLKRAAVTNSP 33 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~ 33 (145)
..++--+.++++++.|+++|++.+|+|+..
T Consensus 161 ~~I~t~eda~~a~~~lhq~~v~~vVITS~~ 190 (308)
T KOG2599|consen 161 MEIRTEEDAKRAVEKLHQKGVKTVVITSFD 190 (308)
T ss_pred CeeccHHHHHHHHHHHHHhCCCEEEEEeee
Confidence 445556788999999999999999999874
No 388
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=46.67 E-value=45 Score=20.89 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=14.7
Q ss_pred CHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHH
Q 036267 11 GLDNVKKWVEGCGLKRAAVTNSPRANAELMITK 43 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~ 43 (145)
.+.+..+++++.|+.++.+|......+....+.
T Consensus 44 ~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~ 76 (140)
T cd02971 44 AFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEK 76 (140)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc
Confidence 333444444444455555554444444444443
No 389
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=46.38 E-value=27 Score=24.03 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCCh
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPR 34 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~ 34 (145)
+.+.++++.++++|.+++.+|+...
T Consensus 125 ~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 125 GNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4677788888888888888887743
No 390
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=46.37 E-value=32 Score=19.51 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=17.3
Q ss_pred HHHHHHHcCCCCCcEEEEecC
Q 036267 69 YLKAIEILNVSKDHTFVFEDS 89 (145)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iGD~ 89 (145)
+...+++.|+.+-++|.|||-
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred HHHHHHHcCCCCCCEEEEccE
Confidence 456778889999999999984
No 391
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=45.77 E-value=23 Score=20.08 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=13.9
Q ss_pred HHHHHHHcCCCCCcEEEEecC
Q 036267 69 YLKAIEILNVSKDHTFVFEDS 89 (145)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iGD~ 89 (145)
....+++.|+..-+++.|||-
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 45 VEKALRKAGAKEGDTVRIGDY 65 (69)
T ss_dssp HHHHHHTTT--TT-EEEETTE
T ss_pred HHHHHHHcCCCCCCEEEEcCE
Confidence 455677788999999999984
No 392
>PLN02834 3-dehydroquinate synthase
Probab=45.54 E-value=1.5e+02 Score=23.38 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=48.5
Q ss_pred CCCcEEEEeCCChH-----HHHHHHHHcCCc-CccceeEecCcccCCCCChHHHHHHH---HHcCCCCC-cEEEEecCH-
Q 036267 22 CGLKRAAVTNSPRA-----NAELMITKLGLS-GFFEAIIIGDECERAKPFPDPYLKAI---EILNVSKD-HTFVFEDSV- 90 (145)
Q Consensus 22 ~g~~~~i~s~~~~~-----~~~~~l~~~~l~-~~f~~i~~~~~~~~~kp~~~~~~~~~---~~~~~~~~-~~~~iGD~~- 90 (145)
.|-++.|+|+.... .+...|+..|+. ..++.++...+ .-|..+.+..++ .+.+++.. -++.||.+.
T Consensus 99 ~g~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE---~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv 175 (433)
T PLN02834 99 HGKRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGE---KYKDMETLMKVFDKALESRLDRRCTFVALGGGVI 175 (433)
T ss_pred CCCEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCc---CCCCHHHHHHHHHHHHhcCCCcCcEEEEECChHH
Confidence 35788999976432 233334444543 22333333222 223456666554 44566644 466788876
Q ss_pred HhHHHHH----hcCCEEEEEcCC
Q 036267 91 SGIKAGV----AADLHVVGLATR 109 (145)
Q Consensus 91 ~Di~~a~----~~G~~~i~v~~g 109 (145)
.|+..+. ..|++.|.|.+.
T Consensus 176 ~D~ak~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 176 GDMCGFAAASYQRGVNFVQIPTT 198 (433)
T ss_pred HHHHHHHHHHhcCCCCEEEECCc
Confidence 7988643 458999998875
No 393
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=45.25 E-value=74 Score=19.76 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=34.4
Q ss_pred CHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeE
Q 036267 11 GLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAII 54 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~ 54 (145)
.+.++++.|.+.++-++++|..-.+.++..++...-..-+..++
T Consensus 34 ~~~~~~~~l~~~~~~iIiite~~a~~i~~~i~~~~~~~~~P~iv 77 (104)
T COG1436 34 ELRAALRVLAEDDVGIILITEDLAEKIREEIRRIIRSSVLPAIV 77 (104)
T ss_pred HHHHHHHhhccCCceEEEEeHHHHhhhHHHHHHHhhccCccEEE
Confidence 47899999999999999999998888888888764344344443
No 394
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=44.88 E-value=31 Score=25.52 Aligned_cols=26 Identities=4% Similarity=0.070 Sum_probs=22.3
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCC
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNS 32 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~ 32 (145)
+-||+.++++++|+++|+++++..+-
T Consensus 67 ~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 67 TKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred hhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 35899999999999999999887543
No 395
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=44.64 E-value=48 Score=20.98 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=8.4
Q ss_pred HHHHHhCCCcEEEEeCCChH
Q 036267 16 KKWVEGCGLKRAAVTNSPRA 35 (145)
Q Consensus 16 l~~l~~~g~~~~i~s~~~~~ 35 (145)
.+.+.+.|+.++.++.....
T Consensus 50 ~~~~~~~~v~vv~V~~~~~~ 69 (149)
T cd02970 50 LPELDALGVELVAVGPESPE 69 (149)
T ss_pred HHHHHhcCeEEEEEeCCCHH
Confidence 33333444444444444333
No 396
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=44.26 E-value=50 Score=23.65 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHH
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPRANAELMIT 42 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~ 42 (145)
.+++.+++++|++.|+++.++.+...+.++.--+
T Consensus 110 ~~~l~~~v~~L~~~GirVSLFiD~d~~qi~aa~~ 143 (243)
T COG0854 110 LDKLRDAVRRLKNAGIRVSLFIDPDPEQIEAAAE 143 (243)
T ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHH
Confidence 4678999999999999999999988888776655
No 397
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=44.24 E-value=1.5e+02 Score=22.99 Aligned_cols=87 Identities=11% Similarity=0.031 Sum_probs=51.5
Q ss_pred CCcEEEEeCCChHH--------HHHHHHHcCCc-CccceeEecCcccCCCCChHHHHHH---HHHcCCC-CCcEEEEecC
Q 036267 23 GLKRAAVTNSPRAN--------AELMITKLGLS-GFFEAIIIGDECERAKPFPDPYLKA---IEILNVS-KDHTFVFEDS 89 (145)
Q Consensus 23 g~~~~i~s~~~~~~--------~~~~l~~~~l~-~~f~~i~~~~~~~~~kp~~~~~~~~---~~~~~~~-~~~~~~iGD~ 89 (145)
+-++.|+|+..... +...|+..|+. ..|+.++.-.+-...||.++....+ +.+.+.+ .+-++.||-+
T Consensus 42 ~~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGG 121 (389)
T PRK06203 42 PKKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGG 121 (389)
T ss_pred CCeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCc
Confidence 36788888764432 22334334442 2255554444445677775544444 4455664 3467789888
Q ss_pred H-HhHHHHHh----cCCEEEEEcCC
Q 036267 90 V-SGIKAGVA----ADLHVVGLATR 109 (145)
Q Consensus 90 ~-~Di~~a~~----~G~~~i~v~~g 109 (145)
. -|+..+.. -|++.+.|.+.
T Consensus 122 sv~D~ak~iA~~~~rgip~I~IPTT 146 (389)
T PRK06203 122 AVLDMVGYAAATAHRGVRLIRIPTT 146 (389)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 7 68865553 38888888765
No 398
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=44.12 E-value=34 Score=25.52 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.5
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeC
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTN 31 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~ 31 (145)
+.||+.++++++|+++|+++++..+
T Consensus 67 ~~FPdp~~mi~~L~~~G~k~~~~v~ 91 (317)
T cd06598 67 KAFPDPAGMIADLAKKGVKTIVITE 91 (317)
T ss_pred ccCCCHHHHHHHHHHcCCcEEEEEc
Confidence 4689999999999999999998775
No 399
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.95 E-value=33 Score=25.95 Aligned_cols=24 Identities=8% Similarity=-0.090 Sum_probs=20.7
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeC
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTN 31 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~ 31 (145)
-||+.++++++|+++|+++.+..+
T Consensus 83 ~FPdp~~mi~~Lh~~G~kv~l~v~ 106 (340)
T cd06597 83 RWPNPKGMIDELHEQGVKVLLWQI 106 (340)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEec
Confidence 478999999999999999987544
No 400
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=43.64 E-value=1.5e+02 Score=23.77 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=23.7
Q ss_pred CCCCcEEEEecCHHhHHHHHh---cCCEEEEEc
Q 036267 78 VSKDHTFVFEDSVSGIKAGVA---ADLHVVGLA 107 (145)
Q Consensus 78 ~~~~~~~~iGD~~~Di~~a~~---~G~~~i~v~ 107 (145)
....++++||-++..+.+|.. .|.++..+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 455789999999999888876 477777664
No 401
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.52 E-value=33 Score=25.56 Aligned_cols=25 Identities=8% Similarity=0.013 Sum_probs=22.0
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeC
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTN 31 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~ 31 (145)
..||+.++++++|+++|+++++..+
T Consensus 70 ~~FPdp~~mi~~L~~~g~k~~~~i~ 94 (317)
T cd06599 70 DRFPDPAAFVAKFHERGIRLAPNIK 94 (317)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeC
Confidence 4789999999999999999987554
No 402
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=43.42 E-value=1.5e+02 Score=22.67 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=49.9
Q ss_pred CCHHHHH-HHHHhCC-CcEEEEeCCChH-----HHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHH---HcCCC
Q 036267 10 NGLDNVK-KWVEGCG-LKRAAVTNSPRA-----NAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIE---ILNVS 79 (145)
Q Consensus 10 ~g~~~~l-~~l~~~g-~~~~i~s~~~~~-----~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~---~~~~~ 79 (145)
+|+.+-+ +.++..| -++.++|+.... .+...|+..|+.- .-.++. +. ..-|.-+....+.+ +.+.+
T Consensus 8 ~g~l~~l~~~l~~~g~~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~-~~~~~~--~~-e~~k~~~~v~~~~~~~~~~~~d 83 (355)
T cd08197 8 ENILDSVLGYLPELNADKYLLVTDSNVEDLYGHRLLEYLREAGAPV-ELLSVP--SG-EEHKTLSTLSDLVERALALGAT 83 (355)
T ss_pred CChHHHHHHHHHhcCCCeEEEEECccHHHHHHHHHHHHHHhcCCce-EEEEeC--CC-CCCCCHHHHHHHHHHHHHcCCC
Confidence 3443333 3344444 578888876432 2333444444421 011221 11 22333344444444 44665
Q ss_pred CCc-EEEEecCH-HhHHHHHh----cCCEEEEEcCC
Q 036267 80 KDH-TFVFEDSV-SGIKAGVA----ADLHVVGLATR 109 (145)
Q Consensus 80 ~~~-~~~iGD~~-~Di~~a~~----~G~~~i~v~~g 109 (145)
... ++.||.+. .|+..+.. .|++.+.|.+.
T Consensus 84 r~~~IIAvGGGsv~D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 84 RRSVIVALGGGVVGNIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhccCCCEEEecCc
Confidence 444 55799877 79886554 38899998874
No 403
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=43.24 E-value=1.2e+02 Score=21.72 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=47.3
Q ss_pred CcccCCHHHHHHHHHhCC-CcEEEEeCCChHHHHHH---HHHcCCcCccceeEecC-cccCCCCChHHHHHHHHHcCCCC
Q 036267 6 LKALNGLDNVKKWVEGCG-LKRAAVTNSPRANAELM---ITKLGLSGFFEAIIIGD-ECERAKPFPDPYLKAIEILNVSK 80 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g-~~~~i~s~~~~~~~~~~---l~~~~l~~~f~~i~~~~-~~~~~kp~~~~~~~~~~~~~~~~ 80 (145)
++..--+..+++.|+..| -+++++|....+..+.+ ++..|++----.-++.. +....+-.|+.+...+.+...+.
T Consensus 102 ~p~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~ 181 (239)
T TIGR02990 102 TPVVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPD 181 (239)
T ss_pred CCeeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCC
Confidence 445555666777777777 68999999887555544 45555541100001111 12344556777777777664433
Q ss_pred CcEE-EEecCHH
Q 036267 81 DHTF-VFEDSVS 91 (145)
Q Consensus 81 ~~~~-~iGD~~~ 91 (145)
.+.+ ..+-++.
T Consensus 182 aDAifisCTnLr 193 (239)
T TIGR02990 182 ADALFLSCTALR 193 (239)
T ss_pred CCEEEEeCCCch
Confidence 4444 4444444
No 404
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=43.16 E-value=1.3e+02 Score=21.97 Aligned_cols=98 Identities=7% Similarity=0.042 Sum_probs=48.2
Q ss_pred ccCCHHHHHHHHHhCCCcEEEE-eCC-ChHHHHHHHHHcCCcCccceeEecCcccCCC-CChHHHHHHHHHcCCCCCcEE
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAV-TNS-PRANAELMITKLGLSGFFEAIIIGDECERAK-PFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~-s~~-~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~k-p~~~~~~~~~~~~~~~~~~~~ 84 (145)
+++...++++.+++.|+..+.+ +.. +.+.++.+.+.. +-|-++++....+..+ ..+..+...+++..-..+.=+
T Consensus 129 P~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a---~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi 205 (263)
T CHL00200 129 PYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAA---PGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPI 205 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC---CCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCE
Confidence 3456667777777777554444 333 234555555432 2233333333332222 223334444433322122234
Q ss_pred EEecCH---HhHHHHHhcCCEEEEEcC
Q 036267 85 VFEDSV---SGIKAGVAADLHVVGLAT 108 (145)
Q Consensus 85 ~iGD~~---~Di~~a~~~G~~~i~v~~ 108 (145)
+||=+. .++..+...|++.+-|.+
T Consensus 206 ~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 206 ILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred EEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 445444 577777778888877753
No 405
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=43.15 E-value=1.1e+02 Score=21.08 Aligned_cols=99 Identities=13% Similarity=0.056 Sum_probs=50.9
Q ss_pred CHHHHHHHHHhCCCcEEEEeCCC--hHHHHHHHHHcCCcCcc-ceeEecCcccCCCCC--hHHHHH-----HH------H
Q 036267 11 GLDNVKKWVEGCGLKRAAVTNSP--RANAELMITKLGLSGFF-EAIIIGDECERAKPF--PDPYLK-----AI------E 74 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s~~~--~~~~~~~l~~~~l~~~f-~~i~~~~~~~~~kp~--~~~~~~-----~~------~ 74 (145)
.+..++..+...|-++.+++..+ ...++...+..+-. |+ ..++++.-+...... ...+.. .. +
T Consensus 44 ~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~~~-~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~ 122 (193)
T cd01425 44 LALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTGSF-YVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIK 122 (193)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCe-eecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 45667788888787888777663 23344444444422 22 333333222110000 000000 01 1
Q ss_pred HcCCCCCcEEEEec--CHHhHHHHHhcCCEEEEEcCCC
Q 036267 75 ILNVSKDHTFVFED--SVSGIKAGVAADLHVVGLATRN 110 (145)
Q Consensus 75 ~~~~~~~~~~~iGD--~~~Di~~a~~~G~~~i~v~~g~ 110 (145)
.+...|+-+++++- ...-+..|...|++++++....
T Consensus 123 ~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 123 DMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred ccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 12345665555552 2246788888999999998764
No 406
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=43.12 E-value=1.2e+02 Score=23.36 Aligned_cols=43 Identities=5% Similarity=0.128 Sum_probs=34.1
Q ss_pred HHHHHHHcCCCCCcEEEEecCH--HhHHHHHhcCCEEEEEcCCCC
Q 036267 69 YLKAIEILNVSKDHTFVFEDSV--SGIKAGVAADLHVVGLATRNP 111 (145)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iGD~~--~Di~~a~~~G~~~i~v~~g~~ 111 (145)
+..+++.+..+.-.+..+|..- .=+.+|++.|++++.|..+..
T Consensus 7 ~~~~~~~y~~~~~~i~~~~shsaL~I~~gAkeeGf~ti~v~~~~~ 51 (358)
T PRK13278 7 ILEILKKYDLDNITIATIGSHSSLQILKGAKKEGFRTIAICKKKR 51 (358)
T ss_pred HHHHHHhcCcccceEEEEecccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 7778888876555677788554 688999999999999987754
No 407
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=42.91 E-value=35 Score=25.22 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=22.1
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeC
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTN 31 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~ 31 (145)
..||+.++++++|++.|+++++..+
T Consensus 63 ~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 63 DRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEec
Confidence 4689999999999999999988754
No 408
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=42.81 E-value=1.5e+02 Score=22.49 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHhC-CCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEec
Q 036267 10 NGLDNVKKWVEGC-GLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFED 88 (145)
Q Consensus 10 ~g~~~~l~~l~~~-g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD 88 (145)
..+.++|+.|.+. ++++++.-.+....-..+.+.+ ..+ +.+...... ....|..+++. -.++|||
T Consensus 200 ~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l--~~~-~~v~~~~~l-----~~~~~l~ll~~------a~~vvgd 265 (346)
T PF02350_consen 200 EQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKL--KKY-DNVRLIEPL-----GYEEYLSLLKN------ADLVVGD 265 (346)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHH--TT--TTEEEE---------HHHHHHHHHH------ESEEEES
T ss_pred HHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHh--ccc-CCEEEECCC-----CHHHHHHHHhc------ceEEEEc
Confidence 3566777777765 6666666554444444444332 222 222221111 12345555543 3467999
Q ss_pred CHHhHH-HHHhcCCEEEEEcCCCChHHhhc
Q 036267 89 SVSGIK-AGVAADLHVVGLATRNPERLLLD 117 (145)
Q Consensus 89 ~~~Di~-~a~~~G~~~i~v~~g~~~~~~~~ 117 (145)
|- .|+ -|--.|.+++-+......++...
T Consensus 266 Ss-GI~eEa~~lg~P~v~iR~~geRqe~r~ 294 (346)
T PF02350_consen 266 SS-GIQEEAPSLGKPVVNIRDSGERQEGRE 294 (346)
T ss_dssp SH-HHHHHGGGGT--EEECSSS-S-HHHHH
T ss_pred Cc-cHHHHHHHhCCeEEEecCCCCCHHHHh
Confidence 99 888 99999999999965544444443
No 409
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=42.63 E-value=35 Score=26.53 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS 47 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 47 (145)
..++.++=+.|++.|+++.+..+.+.+.+..+++.+++.
T Consensus 60 ~esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~ 98 (429)
T TIGR02765 60 LESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVR 98 (429)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCC
Confidence 345666667888899999999998888888888876643
No 410
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=42.54 E-value=1.2e+02 Score=21.58 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHhCCCcEEE-EeCC-ChHHHHHHHHHcCCcCccceeEecCcc-cCCCCChHHHHHHHHHcCCCCCcEEE
Q 036267 9 LNGLDNVKKWVEGCGLKRAA-VTNS-PRANAELMITKLGLSGFFEAIIIGDEC-ERAKPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i-~s~~-~~~~~~~~l~~~~l~~~f~~i~~~~~~-~~~kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
++...++++.+++.|++.++ ++.. +.+.++..++. ..-|-.+++.... +..++........+++..--.+--++
T Consensus 115 ~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~---~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~ 191 (242)
T cd04724 115 PEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAEL---ASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIA 191 (242)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhh---CCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEE
Confidence 34666788888888886665 4543 34556666652 1112244443332 22222222222222222211244566
Q ss_pred EecCHH---hHHHHHhcCCEEEEEcCC
Q 036267 86 FEDSVS---GIKAGVAADLHVVGLATR 109 (145)
Q Consensus 86 iGD~~~---Di~~a~~~G~~~i~v~~g 109 (145)
+|=+.+ ++..+.++ ++.+-|.+.
T Consensus 192 vggGI~~~e~~~~~~~~-ADgvVvGSa 217 (242)
T cd04724 192 VGFGISTPEQAAEVAKY-ADGVIVGSA 217 (242)
T ss_pred EEccCCCHHHHHHHHcc-CCEEEECHH
Confidence 676665 67777776 777777543
No 411
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=42.35 E-value=66 Score=20.06 Aligned_cols=36 Identities=17% Similarity=0.020 Sum_probs=25.2
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHH
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMIT 42 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~ 42 (145)
++.-|...++..+++...+++|++++..+.....++
T Consensus 25 Klv~G~~~vlkalk~gkaklViiA~D~~~~~kkki~ 60 (108)
T PTZ00106 25 KYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIE 60 (108)
T ss_pred CeeecHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHH
Confidence 456688888888887667777777666555555554
No 412
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=42.07 E-value=57 Score=25.14 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHhCCCcEEEE-eCCChHHHHHHHHH
Q 036267 9 LNGLDNVKKWVEGCGLKRAAV-TNSPRANAELMITK 43 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~-s~~~~~~~~~~l~~ 43 (145)
.|+..+++++|+++|+.+.+- |+.+.+++...++.
T Consensus 176 ~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~ 211 (380)
T TIGR00221 176 EDQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKA 211 (380)
T ss_pred CCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHc
Confidence 578999999999999999887 88888888777664
No 413
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=42.03 E-value=87 Score=26.22 Aligned_cols=94 Identities=11% Similarity=0.095 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCCh---HHHHHHHHHcCCcCcc----ceeEecCc--------ccCCCCChHHH---HH
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPR---ANAELMITKLGLSGFF----EAIIIGDE--------CERAKPFPDPY---LK 71 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~---~~~~~~l~~~~l~~~f----~~i~~~~~--------~~~~kp~~~~~---~~ 71 (145)
-|+.++...+++.||++..+|...- ...+..|....=+.+. ..+++.+. ...+||+..-+ ..
T Consensus 561 ~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~D 640 (738)
T KOG2116|consen 561 TGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPEVFKIACLTD 640 (738)
T ss_pred hhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHHH
Confidence 4889999999999999999998753 3334444443212111 23333332 23456653222 22
Q ss_pred HHHHcCCCCC-cEEEEecCHHhHHHHHhcCCEE
Q 036267 72 AIEILNVSKD-HTFVFEDSVSGIKAGVAADLHV 103 (145)
Q Consensus 72 ~~~~~~~~~~-~~~~iGD~~~Di~~a~~~G~~~ 103 (145)
+..-+.-..+ =..-+|+..+|..+=++.|++.
T Consensus 641 Ik~LF~p~~nPFYAgFGNR~TDviSY~~VgVP~ 673 (738)
T KOG2116|consen 641 IKNLFPPSGNPFYAGFGNRITDVISYRQVGVPL 673 (738)
T ss_pred HHHhcCCCCCceeeecCCCcccceeeeeecCCc
Confidence 2222331122 2457899999999999999873
No 414
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=42.01 E-value=48 Score=21.40 Aligned_cols=80 Identities=10% Similarity=-0.006 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhCCCcEEEEeCC---ChHHHH---HHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE
Q 036267 11 GLDNVKKWVEGCGLKRAAVTNS---PRANAE---LMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF 84 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s~~---~~~~~~---~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 84 (145)
-..++++...+.+-.++.+|+- +...++ ..|+..|+.+ +..++++.- ..+..+-......++++|+ ..++
T Consensus 38 ~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~-v~vivGG~~-~i~~~d~~~~~~~L~~~Gv--~~vf 113 (128)
T cd02072 38 PQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKD-ILLYVGGNL-VVGKQDFEDVEKRFKEMGF--DRVF 113 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCC-CeEEEECCC-CCChhhhHHHHHHHHHcCC--CEEE
Confidence 4578888888888888888863 333333 3445556644 444444332 1122222234566777887 4555
Q ss_pred EEecCHHhHH
Q 036267 85 VFEDSVSGIK 94 (145)
Q Consensus 85 ~iGD~~~Di~ 94 (145)
-=|+.+.++.
T Consensus 114 ~pgt~~~~i~ 123 (128)
T cd02072 114 APGTPPEEAI 123 (128)
T ss_pred CcCCCHHHHH
Confidence 5556555543
No 415
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=41.98 E-value=29 Score=24.72 Aligned_cols=42 Identities=12% Similarity=0.268 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeC-CChHHHHHHHHHcCCcCcc
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTN-SPRANAELMITKLGLSGFF 50 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~-~~~~~~~~~l~~~~l~~~f 50 (145)
+++.+..++.|++.|+|-=+++. +....-..+.++.|.+.|+
T Consensus 169 m~~~~~viE~L~eeGiRd~v~v~vGGApvtq~~a~~iGAD~~~ 211 (227)
T COG5012 169 MIGMKDVIELLKEEGIRDKVIVMVGGAPVTQDWADKIGADAYA 211 (227)
T ss_pred HHHHHHHHHHHHHcCCccCeEEeecCccccHHHHHHhCCCccC
Confidence 44555666666666655555544 3333444445555555443
No 416
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=41.80 E-value=35 Score=23.97 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=20.4
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCCh
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPR 34 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~ 34 (145)
.+++.++++.++++|+++.+=||++.
T Consensus 85 ~~~l~~Ll~~l~~~g~~~~lETngti 110 (212)
T COG0602 85 QPNLLELLELLKRLGFRIALETNGTI 110 (212)
T ss_pred cccHHHHHHHHHhCCceEEecCCCCc
Confidence 45788888888888888888887753
No 417
>PRK13938 phosphoheptose isomerase; Provisional
Probab=41.73 E-value=31 Score=23.91 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCCh
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPR 34 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~ 34 (145)
+.+.++++..+++|.+++.+|+...
T Consensus 127 ~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 127 MSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4577888888999999999998754
No 418
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=41.43 E-value=38 Score=25.51 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=22.0
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeC
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTN 31 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~ 31 (145)
+.||+.+.++++|+++|+++++..+
T Consensus 61 ~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 61 KKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEec
Confidence 4689999999999999999988765
No 419
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=41.40 E-value=1.6e+02 Score=22.66 Aligned_cols=87 Identities=15% Similarity=0.055 Sum_probs=50.6
Q ss_pred CCcEEEEeCCChHH--------HHHHHHHcCCc-CccceeEecCcccCCCCChHHHHHH---HHHcCCCCC-cEEEEecC
Q 036267 23 GLKRAAVTNSPRAN--------AELMITKLGLS-GFFEAIIIGDECERAKPFPDPYLKA---IEILNVSKD-HTFVFEDS 89 (145)
Q Consensus 23 g~~~~i~s~~~~~~--------~~~~l~~~~l~-~~f~~i~~~~~~~~~kp~~~~~~~~---~~~~~~~~~-~~~~iGD~ 89 (145)
+-++.|+|+..... +...++..|+. ..|..++.-.+-...||..+.+..+ +.+.+.+.. -++.+|-+
T Consensus 30 ~~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG 109 (369)
T cd08198 30 RPKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGG 109 (369)
T ss_pred CCeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECCh
Confidence 36788999875433 22333333432 1123333333445667765555444 445677544 56688888
Q ss_pred H-HhHHHHHhc----CCEEEEEcCC
Q 036267 90 V-SGIKAGVAA----DLHVVGLATR 109 (145)
Q Consensus 90 ~-~Di~~a~~~----G~~~i~v~~g 109 (145)
. -|+..+..+ |++.+.|.+.
T Consensus 110 ~v~D~ag~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 110 AVLDAVGYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 7 688866643 8999999866
No 420
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=41.19 E-value=39 Score=26.81 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=31.5
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS 47 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 47 (145)
++.++.++=+.|++.|+++.+..+.+.+.+..+++..++.
T Consensus 53 l~esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~ 92 (471)
T TIGR03556 53 LIGCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAK 92 (471)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCC
Confidence 3456666777888999999999999888888888876654
No 421
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=41.06 E-value=34 Score=20.80 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=25.0
Q ss_pred CCcEEEE-ecCHHhHHHHHhcCCEEEEEcCCCC
Q 036267 80 KDHTFVF-EDSVSGIKAGVAADLHVVGLATRNP 111 (145)
Q Consensus 80 ~~~~~~i-GD~~~Di~~a~~~G~~~i~v~~g~~ 111 (145)
+..++.+ ||+..=+..|..+|+.++-++.|..
T Consensus 40 ~~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~ 72 (105)
T PF07085_consen 40 PGDLVITPGDREDIQLAAIEAGIACIILTGGLE 72 (105)
T ss_dssp TTEEEEEETT-HHHHHHHCCTTECEEEEETT--
T ss_pred CCeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCC
Confidence 3777777 9999999999999999998887754
No 422
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=41.04 E-value=92 Score=20.83 Aligned_cols=47 Identities=11% Similarity=0.238 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc-CccceeEecCc
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS-GFFEAIIIGDE 58 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~~i~~~~~ 58 (145)
..+.++|+.++.+|.++++.-.+.+ ...++..+|+. ++++.++-.+.
T Consensus 55 ~~l~~~L~~~~~~gk~I~~yGA~~k--g~tlln~~g~~~~~I~~vvD~np 102 (160)
T PF08484_consen 55 AELREFLEKLKAEGKRIAGYGAGAK--GNTLLNYFGLDNDLIDYVVDDNP 102 (160)
T ss_dssp HHHHHHHHHHHHTT--EEEE---SH--HHHHHHHHT--TTTS--EEES-G
T ss_pred HHHHHHHHHHHHcCCEEEEECcchH--HHHHHHHhCCCcceeEEEEeCCh
Confidence 4567888899999988888877644 34557777874 55677765443
No 423
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=40.90 E-value=1.2e+02 Score=20.74 Aligned_cols=80 Identities=11% Similarity=-0.003 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccc-eeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecCH-
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFE-AIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDSV- 90 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~-~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~- 90 (145)
.++++...++|++++++-+.+ +.++...+.+.- .|-. .+.+. .+.-. +..-..+++..+-...++++||=+.
T Consensus 38 ~~l~~~~~~~~~~vfllG~~~-~v~~~~~~~l~~-~yP~l~i~g~--~g~f~--~~~~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 38 EELCQRAGKEKLPIFLYGGKP-DVLQQLKVKLIK-EYPKLKIVGA--FGPLE--PEERKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred HHHHHHHHHcCCeEEEECCCH-HHHHHHHHHHHH-HCCCCEEEEE--CCCCC--hHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 466677778889999995543 444433333211 1111 12222 12222 2233445555554556677777443
Q ss_pred -HhHHHHHh
Q 036267 91 -SGIKAGVA 98 (145)
Q Consensus 91 -~Di~~a~~ 98 (145)
..+-..+.
T Consensus 112 kQE~~~~~~ 120 (177)
T TIGR00696 112 KQEIWMRNH 120 (177)
T ss_pred HhHHHHHHh
Confidence 35544433
No 424
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=40.59 E-value=28 Score=25.26 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=32.1
Q ss_pred CCCh----HHHHHHHHHcCCCCC--cEEEEecCH-HhHHHHHhcCCE
Q 036267 63 KPFP----DPYLKAIEILNVSKD--HTFVFEDSV-SGIKAGVAADLH 102 (145)
Q Consensus 63 kp~~----~~~~~~~~~~~~~~~--~~~~iGD~~-~Di~~a~~~G~~ 102 (145)
||.| +.|+..++.+|+++. ++=||.|++ +--..|.-.|+.
T Consensus 86 KPsP~NiQeLYL~SL~~lGid~~~HDIRFVEDnWE~PTlGawGlGWE 132 (298)
T COG0752 86 KPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWENPTLGAWGLGWE 132 (298)
T ss_pred cCCCccHHHHHHHHHHHcCCChhhcceeeeccCCCCCccccccccee
Confidence 6666 678888999999774 688999999 778888887765
No 425
>PRK12404 stage V sporulation protein AD; Provisional
Probab=40.48 E-value=60 Score=24.66 Aligned_cols=64 Identities=19% Similarity=0.135 Sum_probs=40.0
Q ss_pred CCcCccceeEecCcccCC---CCC----hHHHHHHHHHcCCCCC--cEEEEecCH----HhHHHHHhcCCEEEEEcC
Q 036267 45 GLSGFFEAIIIGDECERA---KPF----PDPYLKAIEILNVSKD--HTFVFEDSV----SGIKAGVAADLHVVGLAT 108 (145)
Q Consensus 45 ~l~~~f~~i~~~~~~~~~---kp~----~~~~~~~~~~~~~~~~--~~~~iGD~~----~Di~~a~~~G~~~i~v~~ 108 (145)
.|.++||.++...-.+.. |.. .+....++++.|++++ +.+++||.. ..-..++..|++++.|..
T Consensus 31 pl~~~FD~~~~d~~~g~~swEkAE~~L~~EA~~~AL~kAGI~~~DID~i~vGdL~nQ~ipssfvar~LGIP~~gV~g 107 (334)
T PRK12404 31 PLAEDFDLLHEDLWLGQDSYEKAERKLLEEACSRAIEKAKLRKEDIQFFLAGDLMNQITPTSFAARTLGIPYLGLFG 107 (334)
T ss_pred CChhhCCeeecccccCCcchHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCcCcHHHHHHHhCCCccceee
Confidence 377889887754433221 111 2445667777788777 478898865 233666788887766643
No 426
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=40.31 E-value=1.2e+02 Score=21.64 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=37.5
Q ss_pred EecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecCH-HhHHHHHhcCCEEEEEcC-CCCh
Q 036267 54 IIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDSV-SGIKAGVAADLHVVGLAT-RNPE 112 (145)
Q Consensus 54 ~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~-~Di~~a~~~G~~~i~v~~-g~~~ 112 (145)
+.-+-+.+..|.. .+..++++.. .+...+|-+=|. .|-..|+++|+.+|+-+- |++.
T Consensus 102 IA~DaT~R~RP~~-~~~~~i~~~k-~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~ 160 (229)
T COG3010 102 IAFDATDRPRPDG-DLEELIARIK-YPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTG 160 (229)
T ss_pred EEeecccCCCCcc-hHHHHHHHhh-cCCcEEEeccCCHHHHHHHHHcCCcEEecccccccC
Confidence 3334444556665 6677766632 356666776444 799999999999999874 4543
No 427
>PLN02382 probable sucrose-phosphatase
Probab=40.13 E-value=72 Score=24.88 Aligned_cols=36 Identities=6% Similarity=-0.188 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc
Q 036267 12 LDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS 47 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 47 (145)
....++++.++|+.++++|+.+...+..+++.+++.
T Consensus 34 ~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~ 69 (413)
T PLN02382 34 FNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLL 69 (413)
T ss_pred HHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCC
Confidence 344457889999999999999999999998887754
No 428
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=40.08 E-value=1.3e+02 Score=23.26 Aligned_cols=70 Identities=10% Similarity=0.141 Sum_probs=46.1
Q ss_pred HHHHHHHcCCCCCcEEEEecCH--HhHHHHHhcCCEEEEEcCCCChHHhhcc----ccceeecCCCChhHHHHhhh
Q 036267 69 YLKAIEILNVSKDHTFVFEDSV--SGIKAGVAADLHVVGLATRNPERLLLDA----KASFIIKDYEDPKLWAALEE 138 (145)
Q Consensus 69 ~~~~~~~~~~~~~~~~~iGD~~--~Di~~a~~~G~~~i~v~~g~~~~~~~~~----~~~~~~~~l~e~~~~~~~~~ 138 (145)
+..+++.+..+.-.+..+|.+- .=+..|++-|.+|+.|........-.+. ....+++++.++....+.+.
T Consensus 6 ~~~~~~~y~~~~~~i~t~~SHsal~i~~gAk~egf~t~~v~~~~r~~~Y~~f~~~~d~~i~~~~f~~~~~~~~~~~ 81 (366)
T PRK13277 6 IKEILEGYDLDKVKIGVLASHSALDVFDGAKDEGFRTIAVCQKGRERTYREFKGIVDEVIVLDKFKDILSEKVQDE 81 (366)
T ss_pred HHHHHhhcCccccEEEEEecchHHHHhccHHhcCCcEEEEEcCCCcchhhhhccccceEEEecchhhhhhHHHHHH
Confidence 4566676665544677888766 5778999999999999877654443333 23357788887543444443
No 429
>PRK10425 DNase TatD; Provisional
Probab=40.07 E-value=1.4e+02 Score=21.57 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=25.1
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHH
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMIT 42 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~ 42 (145)
.++...+++++.++.|+.-+++++.+.......++
T Consensus 13 ~~~d~~~vl~~a~~~gv~~~i~~~~~~~~~~~~~~ 47 (258)
T PRK10425 13 FAKDRDDVVARAFAAGVNGMLITGTNLRESQQAQK 47 (258)
T ss_pred hhccHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHH
Confidence 45788899999999997666666666555554544
No 430
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=39.93 E-value=40 Score=25.16 Aligned_cols=25 Identities=4% Similarity=0.011 Sum_probs=21.6
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeC
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTN 31 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~ 31 (145)
+.||+.+++++.|+++|+++++..+
T Consensus 61 ~~FPdp~~~i~~l~~~g~k~~~~~~ 85 (317)
T cd06600 61 YRFPEPKKLIDELHKRNVKLVTIVD 85 (317)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEee
Confidence 3589999999999999999887753
No 431
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=39.84 E-value=1.3e+02 Score=21.10 Aligned_cols=96 Identities=15% Similarity=-0.039 Sum_probs=53.3
Q ss_pred HHHHHHhCCCcEE-EEeCC------------ChHHHHHHHHHcCCcCccceeEecCcccCCCC-ChHHHHHHHHHcCCCC
Q 036267 15 VKKWVEGCGLKRA-AVTNS------------PRANAELMITKLGLSGFFEAIIIGDECERAKP-FPDPYLKAIEILNVSK 80 (145)
Q Consensus 15 ~l~~l~~~g~~~~-i~s~~------------~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp-~~~~~~~~~~~~~~~~ 80 (145)
++..++++|+.+. ++|-. ..+.++...+.+|+.... +..... .+ ..+.+..++.+..-..
T Consensus 13 al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~---i~~~~~---~~~~~~~l~~~l~~~~~~g 86 (218)
T TIGR03679 13 ALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVK---IETSGE---KEKEVEDLKGALKELKREG 86 (218)
T ss_pred HHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEE---EECCCC---ChHHHHHHHHHHHHHHHcC
Confidence 3456677888773 54511 235566667777876332 111100 01 0112333333331123
Q ss_pred CcEEEEecCHHhH------HHHHhcCCEEEEEcCCCChHHhh
Q 036267 81 DHTFVFEDSVSGI------KAGVAADLHVVGLATRNPERLLL 116 (145)
Q Consensus 81 ~~~~~iGD~~~Di------~~a~~~G~~~i~v~~g~~~~~~~ 116 (145)
-+.++.||...|. ..+...|+..+.=.|+.++.++.
T Consensus 87 ~~~vv~G~i~sd~~~~~~e~v~~~~gl~~~~PLw~~~~~el~ 128 (218)
T TIGR03679 87 VEGIVTGAIASRYQKSRIERICEELGLKVFAPLWGRDQEEYL 128 (218)
T ss_pred CCEEEECCcccHhHHHHHHHHHHhCCCeEEeehhcCCHHHHH
Confidence 5689999987654 44566899988888997766544
No 432
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=39.80 E-value=1.7e+02 Score=22.22 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCcEEEEe-CCChHHHHHHHHHc--CCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEe--
Q 036267 13 DNVKKWVEGCGLKRAAVT-NSPRANAELMITKL--GLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFE-- 87 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s-~~~~~~~~~~l~~~--~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iG-- 87 (145)
.+++++.+..++ ++.++ +...+..+.+-... ++. .|.++.-...+..+.-.+++..+.+.+ |...++.|
T Consensus 72 ~sfvrk~k~~~L-~v~~SvG~t~e~~~r~~~lv~a~~~--~d~i~~D~ahg~s~~~~~~i~~i~~~~---p~~~vi~GnV 145 (321)
T TIGR01306 72 IPFIKDMQERGL-FASISVGVKACEYEFVTQLAEEALT--PEYITIDIAHGHSNSVINMIKHIKTHL---PDSFVIAGNV 145 (321)
T ss_pred HHHHHhcccccc-EEEEEcCCCHHHHHHHHHHHhcCCC--CCEEEEeCccCchHHHHHHHHHHHHhC---CCCEEEEecC
Confidence 445666666666 44444 44443333332221 221 244433222222232334455555544 44556777
Q ss_pred cCHHhHHHHHhcCCEEEEEcCC
Q 036267 88 DSVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 88 D~~~Di~~a~~~G~~~i~v~~g 109 (145)
.+..+...+.++|+..+-|..|
T Consensus 146 ~t~e~a~~l~~aGad~I~V~~G 167 (321)
T TIGR01306 146 GTPEAVRELENAGADATKVGIG 167 (321)
T ss_pred CCHHHHHHHHHcCcCEEEECCC
Confidence 4667999999999999888754
No 433
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=39.51 E-value=4.5 Score=20.87 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=17.6
Q ss_pred HHHHHHhCCCcEEEEeCCChHHHHHHHHH
Q 036267 15 VKKWVEGCGLKRAAVTNSPRANAELMITK 43 (145)
Q Consensus 15 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~ 43 (145)
+.++|++.|+..+-+|...+......|..
T Consensus 11 Lr~~L~~~G~~~GPIt~tTR~vY~kkL~k 39 (43)
T PF03020_consen 11 LREELREYGEPPGPITPTTRKVYEKKLAK 39 (43)
T ss_dssp CHHCCCCCT-S-----CCCHHHHHHHCHH
T ss_pred HHHHHHHcCCCCCCCCcccHHHHHHHHHH
Confidence 45678889999999999988877777654
No 434
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=39.42 E-value=1.4e+02 Score=21.18 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=47.2
Q ss_pred HHHHHHHHHhCCCcEEEEeCC--ChHHHHHHHHHcCCcCccceeEecC-cccCCCCChHHHHHHHHHcCCCCCcEEEEec
Q 036267 12 LDNVKKWVEGCGLKRAAVTNS--PRANAELMITKLGLSGFFEAIIIGD-ECERAKPFPDPYLKAIEILNVSKDHTFVFED 88 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~--~~~~~~~~l~~~~l~~~f~~i~~~~-~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD 88 (145)
+.++++.+++.|.++++.-+. +.+.++.+++ ....+++- +.+.+ .....+=.+..+.++.+-...-+...+.|.-
T Consensus 103 ~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~-~~~vD~Vl-~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdG 180 (228)
T PTZ00170 103 PKAVARKIREAGMKVGVAIKPKTPVEVLFPLID-TDLVDMVL-VMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDG 180 (228)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHc-cchhhhHH-hhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECC
Confidence 678889999999888877554 3344444431 12222221 11111 1111111233333332211221223344444
Q ss_pred CH--HhHHHHHhcCCEEEEEcCC
Q 036267 89 SV--SGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 89 ~~--~Di~~a~~~G~~~i~v~~g 109 (145)
+. ..+..+.++|+..+-+.+.
T Consensus 181 GI~~~ti~~~~~aGad~iVvGsa 203 (228)
T PTZ00170 181 GINLETIDIAADAGANVIVAGSS 203 (228)
T ss_pred CCCHHHHHHHHHcCCCEEEEchH
Confidence 44 4788888899988877544
No 435
>PF13034 DUF3895: Protein of unknown function (DUF3895)
Probab=39.37 E-value=42 Score=19.72 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=25.5
Q ss_pred cccCcccCCHHHHHHHHHhCCCcEEEEeCCChH
Q 036267 3 SEQLKALNGLDNVKKWVEGCGLKRAAVTNSPRA 35 (145)
Q Consensus 3 ~~~~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~ 35 (145)
+++-+.||.+--.|+.|...|+-..+-+.+.++
T Consensus 41 TgKpkiY~~Vc~yLe~L~~eg~l~~i~~~~~~d 73 (78)
T PF13034_consen 41 TGKPKIYPYVCNYLEYLVKEGKLSFIENDGTRD 73 (78)
T ss_pred CCCceeHHHHHHHHHHHHHCCeEEEEecCcchh
Confidence 566778999999999999998777766655443
No 436
>PRK03202 6-phosphofructokinase; Provisional
Probab=39.27 E-value=54 Score=24.69 Aligned_cols=93 Identities=24% Similarity=0.177 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc---Ccc---ceeEecCcccCCCC--ChHHHHHHHHHcC-CCCCcEE
Q 036267 14 NVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS---GFF---EAIIIGDECERAKP--FPDPYLKAIEILN-VSKDHTF 84 (145)
Q Consensus 14 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~---~~f---~~i~~~~~~~~~kp--~~~~~~~~~~~~~-~~~~~~~ 84 (145)
.+++.+.+.|+.++-+-++..-..+..+..+... .+. -.++++. +.+| .++.+.++++.+. ..-+-.+
T Consensus 22 ~~~~~~~~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~Lgts---R~~~~~~~~~~~~~~~~l~~~~Id~Li 98 (320)
T PRK03202 22 AVVRTAISEGLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSA---RFPEFKDEEGRAKAIENLKKLGIDALV 98 (320)
T ss_pred HHHHHHHHCCCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccC---CCCCcCCHHHHHHHHHHHHHcCCCEEE
Confidence 3446666778888888877543332211111100 000 1122222 1222 3455666655553 2447788
Q ss_pred EEecCH--HhHHHHHhcCCEEEEEcCC
Q 036267 85 VFEDSV--SGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 85 ~iGD~~--~Di~~a~~~G~~~i~v~~g 109 (145)
+||..- .....-.+.++++++|.-.
T Consensus 99 ~IGGd~s~~~a~~L~e~~i~vigiPkT 125 (320)
T PRK03202 99 VIGGDGSYMGAKRLTEHGIPVIGLPGT 125 (320)
T ss_pred EeCChHHHHHHHHHHhcCCcEEEeccc
Confidence 888444 4554445579999999644
No 437
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=39.14 E-value=70 Score=24.46 Aligned_cols=36 Identities=14% Similarity=0.050 Sum_probs=30.0
Q ss_pred CHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCC
Q 036267 11 GLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGL 46 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l 46 (145)
-..++|+.+++.|+++++++..-....+..++..++
T Consensus 253 F~e~~L~~ake~~I~~vl~~P~V~~~~~~~~~~~~~ 288 (345)
T PF07611_consen 253 FLEKFLKLAKENGIPVVLWWPKVSPPYEKLYKELKV 288 (345)
T ss_pred HHHHHHHHHHHcCCcEEEEEeccCHHHHHHHHhhch
Confidence 356788999999999999999888888888877665
No 438
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.13 E-value=29 Score=18.06 Aligned_cols=18 Identities=6% Similarity=0.276 Sum_probs=11.9
Q ss_pred cCCHHHHHHHHHhCCCcE
Q 036267 9 LNGLDNVKKWVEGCGLKR 26 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~ 26 (145)
.+.++++++.|.+.|+.+
T Consensus 18 I~~~~~~l~~l~~~g~~i 35 (48)
T PF11848_consen 18 ISEVKPLLDRLQQAGFRI 35 (48)
T ss_pred hhhHHHHHHHHHHcCccc
Confidence 446677777777777654
No 439
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=39.04 E-value=1e+02 Score=19.47 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=27.9
Q ss_pred cCcccCCHHHHHHHHHhC---CCcEEEEeCCCh--HHHHHHHHHcC
Q 036267 5 QLKALNGLDNVKKWVEGC---GLKRAAVTNSPR--ANAELMITKLG 45 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~---g~~~~i~s~~~~--~~~~~~l~~~~ 45 (145)
+..+.+...+.+..+.+. ++++.+.||+.. ...-..+...+
T Consensus 55 ep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~ 100 (166)
T PF04055_consen 55 EPTLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLG 100 (166)
T ss_dssp TGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTT
T ss_pred CCCcchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcC
Confidence 345567788888888775 899999998876 33334444445
No 440
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=38.98 E-value=1.6e+02 Score=21.83 Aligned_cols=63 Identities=11% Similarity=0.027 Sum_probs=43.5
Q ss_pred CHHHHHHHHHhCC-CcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCC
Q 036267 11 GLDNVKKWVEGCG-LKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNV 78 (145)
Q Consensus 11 g~~~~l~~l~~~g-~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~ 78 (145)
++..+|+++.+.| ++-+-+||-....++.+++..+...-+..|-. ....+.++ +...|++.|+
T Consensus 121 etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~----hp~~~q~e-l~~~~~~~gI 184 (280)
T COG0656 121 ETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEY----HPYLRQPE-LLPFCQRHGI 184 (280)
T ss_pred HHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEe----ccCCCcHH-HHHHHHHcCC
Confidence 7888999999999 78888999999999999987665544444422 22223334 5556666553
No 441
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=38.98 E-value=38 Score=24.59 Aligned_cols=39 Identities=13% Similarity=0.312 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS 47 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 47 (145)
.||=..+=+.|++.|++++|+|..+....+..++.-|+.
T Consensus 72 ~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~~g~G 110 (276)
T PF01993_consen 72 APGPTKAREMLSAKGIPCIVISDAPTKKAKDALEEEGFG 110 (276)
T ss_dssp SHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHHHHTT-E
T ss_pred CCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHHHhcCCc
Confidence 456666777888999999999999877778888877753
No 442
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=38.76 E-value=76 Score=23.43 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCc
Q 036267 12 LDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLS 47 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 47 (145)
..++++.++++|+++.+-|-+....++.+++ .|++
T Consensus 250 ~~~~v~~~~~~G~~v~vWTVNd~~~~~~l~~-~GVd 284 (300)
T cd08612 250 RPSLFRHLQKRGIQVYGWVLNDEEEFERAFE-LGAD 284 (300)
T ss_pred CHHHHHHHHHCCCEEEEeecCCHHHHHHHHh-cCCC
Confidence 3578899999999999999888788877776 4643
No 443
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.62 E-value=1e+02 Score=22.15 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=40.0
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCc
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDE 58 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~ 58 (145)
+.+++...+.-|..++..++.+|-.+.+.+...-.+.|+. |+.+.+.+.
T Consensus 97 laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rmGW~--f~w~Ss~~s 145 (247)
T COG4312 97 LADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRMGWQ--FPWVSSTDS 145 (247)
T ss_pred HHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhcCCc--ceeEeccCc
Confidence 3456667788899999999999999999999999999987 776655543
No 444
>TIGR00623 sula cell division inhibitor SulA. All proteins in this family for which the functions are known are cell division inhibitors. In E. coli, SulA is one of the SOS regulated genes.
Probab=38.58 E-value=44 Score=22.73 Aligned_cols=41 Identities=5% Similarity=-0.038 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCCCCcEEEE-----ecCHHhHHHHHhcCCEEEEEcC
Q 036267 68 PYLKAIEILNVSKDHTFVF-----EDSVSGIKAGVAADLHVVGLAT 108 (145)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i-----GD~~~Di~~a~~~G~~~i~v~~ 108 (145)
.....++..|++.++++.| -|.+.-++-|.+.|...+.+.|
T Consensus 72 ~~~~~L~~~Gl~l~rvlli~~~~~~d~lwa~EQaLrSG~c~aVL~W 117 (168)
T TIGR00623 72 LSKEWVQSSGLPLTKVMQISQLSPCNTVESMIRALRTGNYSVVIGW 117 (168)
T ss_pred cCHHHHHHcCCChhHEEEEecCCchhHHHHHHHHHHhCCCcEEEec
Confidence 4566777889999999888 3666677777788888777777
No 445
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=38.52 E-value=1.1e+02 Score=19.73 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=32.1
Q ss_pred CCCChHHHHHHHHHcCCCCC-cEEEEecC----H---HhHHHHHhcCCEEEEEcCCC
Q 036267 62 AKPFPDPYLKAIEILNVSKD-HTFVFEDS----V---SGIKAGVAADLHVVGLATRN 110 (145)
Q Consensus 62 ~kp~~~~~~~~~~~~~~~~~-~~~~iGD~----~---~Di~~a~~~G~~~i~v~~g~ 110 (145)
..|.++.+...+.++|++++ .+|+.+++ . .-.-..+..|..-+.+..|+
T Consensus 76 ~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG 132 (138)
T cd01445 76 MEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGG 132 (138)
T ss_pred CCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCC
Confidence 45566789999999999766 45555543 2 23334556788777776653
No 446
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=38.41 E-value=1.3e+02 Score=22.34 Aligned_cols=114 Identities=7% Similarity=-0.004 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHhCCCcEEE-EeCCC--------hHHHHHHHHH-cCCcCccceeEecCcccCCCCChHHHHHHHHHcCCC
Q 036267 10 NGLDNVKKWVEGCGLKRAA-VTNSP--------RANAELMITK-LGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVS 79 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i-~s~~~--------~~~~~~~l~~-~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~ 79 (145)
-.+.++.+++-+.|.-++| =++.+ .+....+++. +.+..-.|..+--.........-..+...+++.|++
T Consensus 107 ~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~~ 186 (285)
T COG1831 107 RHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGIK 186 (285)
T ss_pred HHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCCC
Confidence 3456677888888866666 23433 2333333332 234444443332222222223345567778888998
Q ss_pred CCcEEEEecCHHhHHHHHhcCC-EEEEEcCCCChHHhhccccceeec
Q 036267 80 KDHTFVFEDSVSGIKAGVAADL-HVVGLATRNPERLLLDAKASFIIK 125 (145)
Q Consensus 80 ~~~~~~iGD~~~Di~~a~~~G~-~~i~v~~g~~~~~~~~~~~~~~~~ 125 (145)
+..++.==-+..+..+ .+.|+ ++|..++... ++....++.|+++
T Consensus 187 ~~~VVkHha~p~v~~~-~~~Gi~pSV~asr~~v-~~a~~~g~~FmmE 231 (285)
T COG1831 187 PYRVVKHHAPPLVLKC-EEVGIFPSVPASRKNV-EDAAELGPRFMME 231 (285)
T ss_pred cceeEeecCCccchhh-hhcCcCCcccccHHHH-HHHHhcCCceEee
Confidence 8888754444445444 44776 4665554422 2223345666544
No 447
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=38.37 E-value=1.2e+02 Score=20.30 Aligned_cols=83 Identities=11% Similarity=-0.068 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccc-eeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 036267 11 GLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFE-AIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDS 89 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~-~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~ 89 (145)
=+.++++.+.+.+.+++++-+.+. .+....+.+. ..|-. .+++...... .+.....+++..+-...++++||=+
T Consensus 36 l~~~l~~~~~~~~~~ifllG~~~~-~~~~~~~~l~-~~yP~l~ivg~~~g~f---~~~~~~~i~~~I~~~~pdiv~vglG 110 (172)
T PF03808_consen 36 LFPDLLRRAEQRGKRIFLLGGSEE-VLEKAAANLR-RRYPGLRIVGYHHGYF---DEEEEEAIINRINASGPDIVFVGLG 110 (172)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHH-HHHHHHHHHH-HHCCCeEEEEecCCCC---ChhhHHHHHHHHHHcCCCEEEEECC
Confidence 356777888888999999977753 3332222211 11111 2332222211 3455666666666555678888865
Q ss_pred H--HhHHHHHh
Q 036267 90 V--SGIKAGVA 98 (145)
Q Consensus 90 ~--~Di~~a~~ 98 (145)
. ..+-..+.
T Consensus 111 ~PkQE~~~~~~ 121 (172)
T PF03808_consen 111 APKQERWIARH 121 (172)
T ss_pred CCHHHHHHHHH
Confidence 5 34444433
No 448
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=38.37 E-value=84 Score=18.40 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCc-EEEEeCCChHHHHHHHHHc
Q 036267 12 LDNVKKWVEGCGLK-RAAVTNSPRANAELMITKL 44 (145)
Q Consensus 12 ~~~~l~~l~~~g~~-~~i~s~~~~~~~~~~l~~~ 44 (145)
+.++|+.....|+. ++|+.+++.+....+++.+
T Consensus 7 L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~ 40 (97)
T PF13704_consen 7 LPEWLAHHLALGVDHIYIYDDGSTDGTREILRAL 40 (97)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhC
Confidence 56788888888877 7888999888888888875
No 449
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=38.34 E-value=38 Score=20.93 Aligned_cols=40 Identities=18% Similarity=0.055 Sum_probs=25.2
Q ss_pred cCcccCCHHHHHHHHHhCCCcEEEEeCCC--hHHHHHHHHHcCCcCc
Q 036267 5 QLKALNGLDNVKKWVEGCGLKRAAVTNSP--RANAELMITKLGLSGF 49 (145)
Q Consensus 5 ~~~~~~g~~~~l~~l~~~g~~~~i~s~~~--~~~~~~~l~~~~l~~~ 49 (145)
.+++|+|... ....|+.+++|+.+ .+.+...|+++||+..
T Consensus 3 ~LKIYg~~L~-----~~~~YKSIlvt~~~~a~~vV~eALeKygL~~e 44 (100)
T cd01781 3 TLKIYGGSLV-----PTRPYKTILLSINDNADRIVGEALEKYGLEKS 44 (100)
T ss_pred eEEEcCCccc-----CCCCeEEEEecCCccHHHHHHHHHHHhCCCcc
Confidence 3455555422 45567778887664 4667777888887654
No 450
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=38.33 E-value=56 Score=17.87 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.3
Q ss_pred CHHHHHHHHHhCCCcEEEEeCCC
Q 036267 11 GLDNVKKWVEGCGLKRAAVTNSP 33 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s~~~ 33 (145)
...+++++.+++|+..+.+|...
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCC
Confidence 47789999999999999999764
No 451
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=37.79 E-value=1.1e+02 Score=27.97 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCh--HHHHHHHHHcCC
Q 036267 12 LDNVKKWVEGCGLKRAAVTNSPR--ANAELMITKLGL 46 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l 46 (145)
+.-+|++|+..|.++.|+|.-.+ +..+.+|..+|.
T Consensus 1265 LAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgy 1301 (1958)
T KOG0391|consen 1265 LAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGY 1301 (1958)
T ss_pred HHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcce
Confidence 34568999999999999997643 555666666553
No 452
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=37.79 E-value=50 Score=24.09 Aligned_cols=45 Identities=13% Similarity=0.011 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhc---CCEEEEEcCC
Q 036267 65 FPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAA---DLHVVGLATR 109 (145)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~---G~~~i~v~~g 109 (145)
....+-+.+..+|++-.+...|||.+.+|..+.+. -.+.+-++.|
T Consensus 22 Na~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGG 69 (255)
T COG1058 22 NAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGG 69 (255)
T ss_pred hHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCC
Confidence 35667778888999999999999999988877653 2566666666
No 453
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=37.68 E-value=67 Score=22.88 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=18.7
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCC
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNS 32 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~ 32 (145)
.+...++++.++++|+.++..+..
T Consensus 149 ~~~~~~~l~~l~~~g~~i~~~~~~ 172 (237)
T TIGR00186 149 VTNLSRTITKLKESGFWTVGTDLD 172 (237)
T ss_pred eCCHHHHHHHHHHCCCEEEEEecC
Confidence 467888999999888887766644
No 454
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=37.45 E-value=49 Score=25.20 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCChHHHHHHH---HHcCCcCccceeEecCcccCC-CCChHHHHHHHHHcCCCCCcEEE
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPRANAELMI---TKLGLSGFFEAIIIGDECERA-KPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l---~~~~l~~~f~~i~~~~~~~~~-kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
++..+-+.+|.+.|..++=+|-...+.+..+- ++..+. +.. |+... |-.-......+.++.+.|-++-
T Consensus 36 ~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vP------LVa-DiHf~~rla~~~~~~g~~k~RINPGNig- 107 (361)
T COG0821 36 EATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVP------LVA-DIHFDYRLALEAAECGVDKVRINPGNIG- 107 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCC------EEE-EeeccHHHHHHhhhcCcceEEECCcccC-
Confidence 34566678888999999999877766666543 333221 111 11111 1001111222444566776643
Q ss_pred EecCH-HhHHHHHhcCCE-EEEEcCCCChHHhh
Q 036267 86 FEDSV-SGIKAGVAADLH-VVGLATRNPERLLL 116 (145)
Q Consensus 86 iGD~~-~Di~~a~~~G~~-~i~v~~g~~~~~~~ 116 (145)
.+|.. .=+++|++.|.+ -|+|.||.-.+.+.
T Consensus 108 ~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~ 140 (361)
T COG0821 108 FKDRVREVVEAAKDKGIPIRIGVNAGSLEKRLL 140 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEecccCchhHHHH
Confidence 34455 467899999997 89999997555443
No 455
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=37.36 E-value=49 Score=25.69 Aligned_cols=45 Identities=9% Similarity=-0.012 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHc----CCCCCcEEEEecCH--Hh-HHHHHhcCCEEEEEcCC
Q 036267 65 FPDPYLKAIEIL----NVSKDHTFVFEDSV--SG-IKAGVAADLHVVGLATR 109 (145)
Q Consensus 65 ~~~~~~~~~~~~----~~~~~~~~~iGD~~--~D-i~~a~~~G~~~i~v~~g 109 (145)
+......+.+-+ ++.+++|++|||-. .. =....+.-+.++||++.
T Consensus 350 Ks~GV~~lQ~y~~~~~~i~~~~tLHVGDQF~s~GaNDfkaR~a~~t~WIasP 401 (408)
T PF06437_consen 350 KSLGVRALQKYFDPEGGIKPSETLHVGDQFLSAGANDFKARLACTTAWIASP 401 (408)
T ss_pred cHHhHHHHHHHHHhccCCCccceeeehhhhhccCCcchhhhhhceeeEecCH
No 456
>PRK13936 phosphoheptose isomerase; Provisional
Probab=37.30 E-value=42 Score=23.16 Aligned_cols=30 Identities=7% Similarity=-0.035 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCChHHHHH
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPRANAEL 39 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~ 39 (145)
+.+.++++.++++|.+++.+|+........
T Consensus 125 ~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~ 154 (197)
T PRK13936 125 ANVIQAIQAAHEREMHVVALTGRDGGKMAS 154 (197)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCChhhh
Confidence 457788888899999999999865443333
No 457
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=36.83 E-value=1.9e+02 Score=22.05 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=49.2
Q ss_pred CCHHHHHHHHH-hCCCcEEEEeCCChH-----HHHHHHHHcCCcCccce-eEecCcccCCCCChHHHHHHHH---HcCCC
Q 036267 10 NGLDNVKKWVE-GCGLKRAAVTNSPRA-----NAELMITKLGLSGFFEA-IIIGDECERAKPFPDPYLKAIE---ILNVS 79 (145)
Q Consensus 10 ~g~~~~l~~l~-~~g~~~~i~s~~~~~-----~~~~~l~~~~l~~~f~~-i~~~~~~~~~kp~~~~~~~~~~---~~~~~ 79 (145)
..+-+.+..+. ...-++.++|+.... .+...++..|+. +.. ++... ..-|..+....+++ +.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~lvVtd~~v~~~~~~~v~~~l~~~g~~--~~~~v~~~~---e~~~s~~~v~~~~~~l~~~~~~ 86 (354)
T cd08199 12 DPSNPLLLDVYLEGSGRRFVVVDQNVDKLYGKKLREYFAHHNIP--LTILVLRAG---EAAKTMDTVLKIVDALDAFGIS 86 (354)
T ss_pred ccchHHHHHhhccCCCeEEEEECccHHHHHHHHHHHHHHhcCCc--eEEEEeCCC---CCCCCHHHHHHHHHHHHHcCCC
Confidence 33444455442 234678888866432 222334433432 121 22211 23334455555554 44554
Q ss_pred CC-cE-EEEecCH-HhHHHHHh----cCCEEEEEcCC
Q 036267 80 KD-HT-FVFEDSV-SGIKAGVA----ADLHVVGLATR 109 (145)
Q Consensus 80 ~~-~~-~~iGD~~-~Di~~a~~----~G~~~i~v~~g 109 (145)
.+ ++ +.||.+. .|+..+.. .|++.+.|.+.
T Consensus 87 r~~d~IVaiGGG~v~D~ak~~A~~~~rg~p~i~VPTT 123 (354)
T cd08199 87 RRREPVLAIGGGVLTDVAGLAASLYRRGTPYVRIPTT 123 (354)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCCCEEEEcCc
Confidence 44 44 4599866 68876554 58888888774
No 458
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=36.70 E-value=1e+02 Score=19.49 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCcEEE----EeCCChHHHHHHHHHcCC
Q 036267 12 LDNVKKWVEGCGLKRAA----VTNSPRANAELMITKLGL 46 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i----~s~~~~~~~~~~l~~~~l 46 (145)
.+.++++|+++|+..-+ -++-+++.+..+++..|.
T Consensus 14 ~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~ 52 (117)
T COG1393 14 CRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGD 52 (117)
T ss_pred HHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCc
Confidence 57788888888877743 345677888888888773
No 459
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=36.61 E-value=41 Score=23.36 Aligned_cols=31 Identities=6% Similarity=-0.053 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCChHHHHHH
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPRANAELM 40 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~ 40 (145)
+.+.++++..+++|.+++.+|+.....+...
T Consensus 123 ~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l 153 (196)
T PRK10886 123 RDIVKAVEAAVTRDMTIVALTGYDGGELAGL 153 (196)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCChhhhc
Confidence 4578889999999999999998865444433
No 460
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=36.58 E-value=91 Score=18.38 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=23.3
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHH
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMI 41 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 41 (145)
++.-|..+.+..++....+++++.+...+.....+
T Consensus 8 Klv~G~~~vlkaIk~gkakLViiA~Da~~~~~k~i 42 (82)
T PRK13601 8 KRVVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKI 42 (82)
T ss_pred cEEEchHHHHHHHHcCCeeEEEEeCCCCHHHHHHH
Confidence 45668888888888766777777655444444443
No 461
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=36.57 E-value=46 Score=26.20 Aligned_cols=43 Identities=7% Similarity=0.047 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHHhHH----HHHhcCCEEEEEcCC
Q 036267 67 DPYLKAIEILNVSKDHTFVFEDSVSGIK----AGVAADLHVVGLATR 109 (145)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~iGD~~~Di~----~a~~~G~~~i~v~~g 109 (145)
.....+.+++|--.+-+++|||++.|+. ++...|++...|-.|
T Consensus 209 ~~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGg 255 (505)
T PF10113_consen 209 EEVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGG 255 (505)
T ss_pred HHHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCC
Confidence 3355677888888899999999997765 455567777777555
No 462
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=36.52 E-value=1.1e+02 Score=27.20 Aligned_cols=89 Identities=11% Similarity=0.156 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCChHH--HHH--HHHHcCCcC--ccceeEecCcccCCCCChHHHHHHHHHcCCCCCc
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPRAN--AEL--MITKLGLSG--FFEAIIIGDECERAKPFPDPYLKAIEILNVSKDH 82 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~~~--~~~--~l~~~~l~~--~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 82 (145)
.+...+.++.+.++|+++..+.-..... ... .+.+-.++. -|-..++-++ ..||......+.+++.|+. -
T Consensus 600 p~~~~~~~~~~a~~G~RVLalA~k~l~~~~~~~~~~~~r~~~E~~L~flGli~~~d--~lr~~~~~~I~~l~~agi~--v 675 (1054)
T TIGR01657 600 PSDYQEVLKSYTREGYRVLALAYKELPKLTLQKAQDLSRDAVESNLTFLGFIVFEN--PLKPDTKEVIKELKRASIR--T 675 (1054)
T ss_pred ChhHHHHHHHHHhcCCEEEEEEEeecCccchhhhhhccHHHHhcCceEEEEEEEec--CCCccHHHHHHHHHHCCCe--E
Confidence 3567788899999999999887442110 000 001101111 1233333333 3555555566666777764 4
Q ss_pred EEEEecCH-HhHHHHHhcCC
Q 036267 83 TFVFEDSV-SGIKAGVAADL 101 (145)
Q Consensus 83 ~~~iGD~~-~Di~~a~~~G~ 101 (145)
++.-||+. .-+.-|+++|+
T Consensus 676 ~miTGD~~~TA~~iA~~~gi 695 (1054)
T TIGR01657 676 VMITGDNPLTAVHVARECGI 695 (1054)
T ss_pred EEECCCCHHHHHHHHHHcCC
Confidence 66779999 68889999998
No 463
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=36.43 E-value=93 Score=20.83 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHc
Q 036267 12 LDNVKKWVEGCGLKRAAVTNSPRANAELMITKL 44 (145)
Q Consensus 12 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~ 44 (145)
+-++++...+.|++++|+|++ ..++..++..
T Consensus 75 Ig~l~~lae~~g~~v~i~~Gg--t~ar~~ik~~ 105 (158)
T PF01976_consen 75 IGDLKKLAEKYGYKVYIATGG--TLARKIIKEY 105 (158)
T ss_pred hhHHHHHHHHcCCEEEEEcCh--HHHHHHHHHh
Confidence 445666667788888888887 5566555543
No 464
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=36.39 E-value=1.1e+02 Score=23.01 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCCh
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPR 34 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~ 34 (145)
|=+..+.+.|+++|++++|+|-+..
T Consensus 52 P~v~~L~~~L~~~G~~~~IlSRGYg 76 (326)
T PF02606_consen 52 PLVIWLARLLQARGYRPAILSRGYG 76 (326)
T ss_pred HHHHHHHHHHHhcCCceEEEcCCCC
Confidence 4466778899999999999997654
No 465
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=36.33 E-value=1.5e+02 Score=20.87 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=48.9
Q ss_pred HHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc--ceeEecCcccCCCCCh-HHHHHHHHHcCCCCCcEEEEecCH-H
Q 036267 16 KKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF--EAIIIGDECERAKPFP-DPYLKAIEILNVSKDHTFVFEDSV-S 91 (145)
Q Consensus 16 l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f--~~i~~~~~~~~~kp~~-~~~~~~~~~~~~~~~~~~~iGD~~-~ 91 (145)
..++...+..+++-++ +.+.+....+ .| .+|+ ..+|........+|.- +.+..+.+...++ ++.||.-- .
T Consensus 97 ar~~~~~~~iIG~S~h-~~eea~~A~~-~g-~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP---~vAIGGi~~~ 170 (211)
T COG0352 97 ARELLGPGLIIGLSTH-DLEEALEAEE-LG-ADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIP---VVAIGGINLE 170 (211)
T ss_pred HHHhcCCCCEEEeecC-CHHHHHHHHh-cC-CCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCC---EEEEcCCCHH
Confidence 3445555555555555 5555554443 23 3443 3344333322222222 3333333333333 88888766 7
Q ss_pred hHHHHHhcCCEEEEEcCC
Q 036267 92 GIKAGVAADLHVVGLATR 109 (145)
Q Consensus 92 Di~~a~~~G~~~i~v~~g 109 (145)
.+....++|+..|.+.+.
T Consensus 171 nv~~v~~~Ga~gVAvvsa 188 (211)
T COG0352 171 NVPEVLEAGADGVAVVSA 188 (211)
T ss_pred HHHHHHHhCCCeEEehhH
Confidence 999999999999999766
No 466
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=36.29 E-value=1.1e+02 Score=21.82 Aligned_cols=98 Identities=9% Similarity=0.088 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCccc---CCCCChHHHHHHHHHc-CCCCCcEE
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECE---RAKPFPDPYLKAIEIL-NVSKDHTF 84 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~---~~kp~~~~~~~~~~~~-~~~~~~~~ 84 (145)
.....+.++++.+.|+..++..+......+...+...- +=..++.+-.+. ...+..... ..++.+ .+...+++
T Consensus 13 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~--~~~~v~~~~GiHP~~~~~~~~~~~-~~l~~l~~~~~~~~~ 89 (255)
T PF01026_consen 13 EEDRPEVLERAREAGVSAIIIVSTDPEDWERVLELASQ--YPDRVYPALGIHPWEAHEVNEEDL-EELEELINLNRPKVV 89 (255)
T ss_dssp TTTHHHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHHH--TTTEEEEEE---GGGGGGHSHHHH-HHHHHHHHHTSTTEE
T ss_pred CcCHHHHHHHHHHcCCCEEEEcCCCHHHhHHHHHHHhc--CCCeEEEEecCCcchhhhhhHHHH-HHHHHHHHhccccce
Confidence 45678899999999988777666666555555543211 112233333321 122222233 333444 33567788
Q ss_pred EEe----cCH---------------HhHHHHHhcCCEEEEEcCC
Q 036267 85 VFE----DSV---------------SGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 85 ~iG----D~~---------------~Di~~a~~~G~~~i~v~~g 109 (145)
.|| |.. .=++-|++.+.+.+.=..+
T Consensus 90 aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~ 133 (255)
T PF01026_consen 90 AIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRK 133 (255)
T ss_dssp EEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEES
T ss_pred eeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCC
Confidence 887 552 1256677778776555444
No 467
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=36.26 E-value=25 Score=25.59 Aligned_cols=78 Identities=10% Similarity=0.007 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCcc---ceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEE
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFF---EAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFV 85 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f---~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 85 (145)
+..+.+.+.+++++|.+++++|++.-..-...+...+...-+ +.+.+..+ .-....|..++..+|+...+++.
T Consensus 33 i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~~~~~~~~~~a~aa~Gq----~~l~~~~~~~~~~~g~~~~q~ll 108 (266)
T PRK12314 33 IEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDKRPTSLAEKQALAAVGQ----PELMSLYSKFFAEYGIVVAQILL 108 (266)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccccCCCCHHHHHHHHHHhH----HHHHHHHHHHHHHcCCeEEEEEE
Confidence 445666677777899999998765332222222211100000 00000000 00124567777788888878876
Q ss_pred EecCH
Q 036267 86 FEDSV 90 (145)
Q Consensus 86 iGD~~ 90 (145)
..+..
T Consensus 109 T~~~~ 113 (266)
T PRK12314 109 TRDDF 113 (266)
T ss_pred ecccc
Confidence 66543
No 468
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=36.12 E-value=54 Score=18.84 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=26.9
Q ss_pred ccCCHHHHHHHHHhCC-CcEEEEeCCChHHHHHHHHHcCCc
Q 036267 8 ALNGLDNVKKWVEGCG-LKRAAVTNSPRANAELMITKLGLS 47 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g-~~~~i~s~~~~~~~~~~l~~~~l~ 47 (145)
.+..-.++.++..... -++.++|..-...+....+.+|++
T Consensus 30 ~f~rk~~lYek~~grk~~r~ivVtp~id~~a~~~A~~LGIe 70 (70)
T PF07788_consen 30 IFKRKAELYEKVHGRKVDRLIVVTPYIDDRAKEMAEELGIE 70 (70)
T ss_pred HHHHHHHHHHHHHCCCcceEEEEEeecCHHHHHHHHHhCCC
Confidence 3444456666666655 567888887777777777777763
No 469
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=36.04 E-value=2e+02 Score=22.17 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCC-----hHHHHHHHHHcCCc
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSP-----RANAELMITKLGLS 47 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~-----~~~~~~~l~~~~l~ 47 (145)
..++.+|..++++|+++++-+++. .+.++.+.+..|+.
T Consensus 58 ~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 58 RDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLS 100 (362)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 356777888888888887776553 24444555566666
No 470
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=35.87 E-value=43 Score=27.37 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccc
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFE 51 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~ 51 (145)
..+++.|.++|+.++++|-...... -..+++++|++
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~---~r~~~ldDYv~ 272 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKA---HREWGLSTYVD 272 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChh---hcCCCHHHHHH
Confidence 5788999999999999996543322 24456777664
No 471
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=35.82 E-value=49 Score=23.18 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcC
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSG 48 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~ 48 (145)
++.+.+.+..+.+.|.+++|+++.. ..+...++.+++..
T Consensus 19 ~~~~~~~i~~l~~~g~~vvvV~g~g-~~~~~~~~~~~~~~ 57 (242)
T PF00696_consen 19 LRELADDIALLSQLGIKVVVVHGGG-SFTDELLEKYGIEP 57 (242)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESSH-HHHHHHHHHCTHTT
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCh-hhcCchHHhccCCc
Confidence 3455666666778999998888765 56777777766544
No 472
>PRK02947 hypothetical protein; Provisional
Probab=35.79 E-value=40 Score=24.16 Aligned_cols=24 Identities=21% Similarity=-0.040 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCC
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSP 33 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~ 33 (145)
+.+.++++.++++|.+++.+|+..
T Consensus 120 ~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 120 PVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCc
Confidence 467889999999999999999875
No 473
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=35.74 E-value=84 Score=22.77 Aligned_cols=97 Identities=23% Similarity=0.162 Sum_probs=55.3
Q ss_pred CHHHHHHHHHhCCCcEEEEeCCChHHHHH-----HHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEE-
Q 036267 11 GLDNVKKWVEGCGLKRAAVTNSPRANAEL-----MITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTF- 84 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s~~~~~~~~~-----~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~- 84 (145)
+-..+++.+...++.+.--|++.+..-+. +.+...-.+|+..-+..++ ..--|++....++.+.+--+--.++
T Consensus 50 ~~~~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~-~~L~PD~~etl~Aae~Lv~eGF~VlP 128 (247)
T PF05690_consen 50 GGDNILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDD-KTLLPDPIETLKAAEILVKEGFVVLP 128 (247)
T ss_dssp TCHHCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-T-TT--B-HHHHHHHHHHHHHTT-EEEE
T ss_pred CCccHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC-CCcCCChhHHHHHHHHHHHCCCEEee
Confidence 45567777777788888888776533332 2223333455555444444 3456888888888887754445565
Q ss_pred EEecCHHhHHHHHhcCCEEEEEcC
Q 036267 85 VFEDSVSGIKAGVAADLHVVGLAT 108 (145)
Q Consensus 85 ~iGD~~~Di~~a~~~G~~~i~v~~ 108 (145)
|+.|.+.-.+-..++|+.++.-..
T Consensus 129 Y~~~D~v~akrL~d~GcaavMPlg 152 (247)
T PF05690_consen 129 YCTDDPVLAKRLEDAGCAAVMPLG 152 (247)
T ss_dssp EE-S-HHHHHHHHHTT-SEBEEBS
T ss_pred cCCCCHHHHHHHHHCCCCEEEecc
Confidence 899988888888889998887643
No 474
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=35.71 E-value=1e+02 Score=18.60 Aligned_cols=34 Identities=9% Similarity=0.219 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCC
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGL 46 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l 46 (145)
....+.|.++|++++.-+....+.....+..+|.
T Consensus 42 ~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~ 75 (89)
T PF08444_consen 42 YHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGF 75 (89)
T ss_pred HHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCC
Confidence 3567889999999999888877888888887763
No 475
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=35.62 E-value=50 Score=24.20 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=25.2
Q ss_pred ccCcccCCHHHHHHHHHhCCC-cEEEEeCCCh
Q 036267 4 EQLKALNGLDNVKKWVEGCGL-KRAAVTNSPR 34 (145)
Q Consensus 4 ~~~~~~~g~~~~l~~l~~~g~-~~~i~s~~~~ 34 (145)
++--+.+++.++++.+++.|+ .+.+.||+..
T Consensus 65 GEPll~~~l~~iv~~l~~~g~~~v~i~TNG~l 96 (302)
T TIGR02668 65 GEPLLRKDLIEIIRRIKDYGIKDVSMTTNGIL 96 (302)
T ss_pred cccccccCHHHHHHHHHhCCCceEEEEcCchH
Confidence 344467889999999999998 8899999854
No 476
>PRK10853 putative reductase; Provisional
Probab=35.59 E-value=76 Score=19.99 Aligned_cols=40 Identities=15% Similarity=0.346 Sum_probs=30.6
Q ss_pred CHHHHHHHHHhCCCcEEEEe----CCChHHHHHHHHHcCCcCcc
Q 036267 11 GLDNVKKWVEGCGLKRAAVT----NSPRANAELMITKLGLSGFF 50 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s----~~~~~~~~~~l~~~~l~~~f 50 (145)
..+.+++.|.++|+..-++- +-+.+.+..+++.+|++..|
T Consensus 12 t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~~l~ 55 (118)
T PRK10853 12 TIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDELGWEALL 55 (118)
T ss_pred HHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHcCHHHHH
Confidence 45788899999998888774 34678888888888876544
No 477
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=35.42 E-value=66 Score=18.99 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=14.3
Q ss_pred cCCHHHHHHHHHhCCCcEEEE
Q 036267 9 LNGLDNVKKWVEGCGLKRAAV 29 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~ 29 (145)
.|.+.++++.|.++|++-+++
T Consensus 44 ~P~i~~~l~~l~~~g~~~vvv 64 (101)
T cd03409 44 GPDTEEAIRELAEEGYQRVVI 64 (101)
T ss_pred CCCHHHHHHHHHHcCCCeEEE
Confidence 577777888887777554443
No 478
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=35.14 E-value=2e+02 Score=21.86 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=53.9
Q ss_pred CCHHHHH-HHHHhCCCcEEEEeCCChH-----HHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcC-CCCCc
Q 036267 10 NGLDNVK-KWVEGCGLKRAAVTNSPRA-----NAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILN-VSKDH 82 (145)
Q Consensus 10 ~g~~~~l-~~l~~~g~~~~i~s~~~~~-----~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~-~~~~~ 82 (145)
+|+.+-+ +.+++.|-++.|+|+.... .+...|+..|+.-.|+.+ .+-|..+....+.+.+. ...+-
T Consensus 15 ~g~~~~l~~~l~~~g~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~-------~~ep~~~~v~~~~~~~~~~~~d~ 87 (366)
T PRK09423 15 KGALARLGEYLKPLGKRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVF-------NGECSDNEIDRLVAIAEENGCDV 87 (366)
T ss_pred CCHHHHHHHHHHHcCCEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEe-------CCCCCHHHHHHHHHHHHhcCCCE
Confidence 4555555 4456667788899975422 222334444443222221 23344556666665553 35677
Q ss_pred EEEEecCH-HhHHHHHh--cCCEEEEEcCC
Q 036267 83 TFVFEDSV-SGIKAGVA--ADLHVVGLATR 109 (145)
Q Consensus 83 ~~~iGD~~-~Di~~a~~--~G~~~i~v~~g 109 (145)
++.||-+. -|+.-+.. .|++.+.|.+.
T Consensus 88 IIavGGGsv~D~aK~iA~~~~~p~i~IPTt 117 (366)
T PRK09423 88 VIGIGGGKTLDTAKAVADYLGVPVVIVPTI 117 (366)
T ss_pred EEEecChHHHHHHHHHHHHcCCCEEEeCCc
Confidence 88899776 68876554 47888888864
No 479
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=35.00 E-value=47 Score=25.08 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=21.4
Q ss_pred ccCCH--HHHHHHHHhCCCcEEEEeC
Q 036267 8 ALNGL--DNVKKWVEGCGLKRAAVTN 31 (145)
Q Consensus 8 ~~~g~--~~~l~~l~~~g~~~~i~s~ 31 (145)
.||+. ++++++|+++|+++.+..+
T Consensus 62 ~FPdp~~~~mi~~L~~~G~k~~~~i~ 87 (339)
T cd06602 62 RFPGLKMPEFVDELHANGQHYVPILD 87 (339)
T ss_pred cCCCccHHHHHHHHHHCCCEEEEEEe
Confidence 58888 9999999999999988764
No 480
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=34.87 E-value=1.6e+02 Score=20.56 Aligned_cols=43 Identities=14% Similarity=0.006 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEec--CHHhHHHHHhcC-CEEEEEcCC
Q 036267 64 PFPDPYLKAIEILNVSKDHTFVFED--SVSGIKAGVAAD-LHVVGLATR 109 (145)
Q Consensus 64 p~~~~~~~~~~~~~~~~~~~~~iGD--~~~Di~~a~~~G-~~~i~v~~g 109 (145)
++.+.+..+.+..+ -.++.-|+ +..|++.+.+.| +..+.+.+.
T Consensus 177 ~d~~~i~~l~~~~~---ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a 222 (233)
T PRK00748 177 PNVEATRELAAAVP---IPVIASGGVSSLDDIKALKGLGAVEGVIVGRA 222 (233)
T ss_pred CCHHHHHHHHHhCC---CCEEEeCCCCCHHHHHHHHHcCCccEEEEEHH
Confidence 67788888877654 34777774 456999999988 998988765
No 481
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=34.86 E-value=1.1e+02 Score=23.11 Aligned_cols=95 Identities=19% Similarity=0.099 Sum_probs=48.8
Q ss_pred HHHHHHHhCCCcEEEEeCCChHHHHHHHHHcC---CcCcc---ceeEecCcccCCCCChHHHHHHHHHcC-CCCCcEEEE
Q 036267 14 NVKKWVEGCGLKRAAVTNSPRANAELMITKLG---LSGFF---EAIIIGDECERAKPFPDPYLKAIEILN-VSKDHTFVF 86 (145)
Q Consensus 14 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~---l~~~f---~~i~~~~~~~~~kp~~~~~~~~~~~~~-~~~~~~~~i 86 (145)
.+++...+.|++++-+-++..-..+..+..+. +..+. -.++++... .....++.+.++++.+. ..-+-.++|
T Consensus 21 ~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~-~~~~~~~~~~~~~~~l~~~~Id~Li~I 99 (317)
T cd00763 21 GVVRSAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARF-PEFKDEEGQAKAIEQLKKHGIDALVVI 99 (317)
T ss_pred HHHHHHHHCCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeeccCCC-CccCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 34456666788888888876544332111111 11110 122322221 11113455555555542 234678888
Q ss_pred ec--CHHhHHHHHhcCCEEEEEcCC
Q 036267 87 ED--SVSGIKAGVAADLHVVGLATR 109 (145)
Q Consensus 87 GD--~~~Di~~a~~~G~~~i~v~~g 109 (145)
|- +......-.+.|++++++.-.
T Consensus 100 GGdgs~~~a~~L~e~~i~vigiPkT 124 (317)
T cd00763 100 GGDGSYMGAMRLTEHGFPCVGLPGT 124 (317)
T ss_pred CCchHHHHHHHHHHcCCCEEEeccc
Confidence 83 334555555679999999644
No 482
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=34.86 E-value=90 Score=23.67 Aligned_cols=92 Identities=23% Similarity=0.188 Sum_probs=47.0
Q ss_pred HHHHHHHhCCCcEEEEeCCChHHHHHHHHHcC---CcCcc---ceeEecCcccCCCC--ChHHHHHHHHHcC-CCCCcEE
Q 036267 14 NVKKWVEGCGLKRAAVTNSPRANAELMITKLG---LSGFF---EAIIIGDECERAKP--FPDPYLKAIEILN-VSKDHTF 84 (145)
Q Consensus 14 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~---l~~~f---~~i~~~~~~~~~kp--~~~~~~~~~~~~~-~~~~~~~ 84 (145)
.+++.+.+.|++++-+-++..-.+...+..+. +..+. -.++++. +.+| .++.+..+++.+. ..-+-.+
T Consensus 21 ~~v~~~~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~Lgts---R~~~~~~~~~~~~~~~~l~~~~I~~Lv 97 (338)
T cd00363 21 GVVRSAIAEGLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSA---RCKEFRTEEGRAKAAENLKKHGIDALV 97 (338)
T ss_pred HHHHHHHHCCCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeecccC---CCCccCCHHHHHHHHHHHHHhCCCEEE
Confidence 34466667788999888876544433211111 11110 1222222 2233 3444555555442 2347788
Q ss_pred EEecCH--HhHHHHHhc------CCEEEEEcC
Q 036267 85 VFEDSV--SGIKAGVAA------DLHVVGLAT 108 (145)
Q Consensus 85 ~iGD~~--~Di~~a~~~------G~~~i~v~~ 108 (145)
+||..- .....-.+. ++++++|.-
T Consensus 98 ~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPk 129 (338)
T cd00363 98 VIGGDGSYTGADLLTEEWPSKYQGFNVIGLPG 129 (338)
T ss_pred EeCCHHHHHHHHHHHHHHHhcCCCccEEEeee
Confidence 998553 344333333 889999864
No 483
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial. This model represents the mitochondrial homolog of bacterial ribosomal protein L1. Unlike chloroplast L1, this form was not sufficiently similar to bacterial forms to include in a single bacterial/organellar L1.
Probab=34.74 E-value=59 Score=21.36 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=20.6
Q ss_pred CCcEEEEecCHHhHHHHHhcCCEEE
Q 036267 80 KDHTFVFEDSVSGIKAGVAADLHVV 104 (145)
Q Consensus 80 ~~~~~~iGD~~~Di~~a~~~G~~~i 104 (145)
..++++|++.....+.|+++|...+
T Consensus 52 ~~kV~Vf~~~~~~~~~Ak~aGa~~v 76 (141)
T TIGR01170 52 EPKIAVFTKGASEVEEAREAGADYV 76 (141)
T ss_pred CCEEEEECCChHHHHHHHHcCCCEe
Confidence 4579999999887888999997743
No 484
>PRK06100 DNA polymerase III subunit psi; Provisional
Probab=34.19 E-value=1e+02 Score=19.97 Aligned_cols=88 Identities=9% Similarity=0.125 Sum_probs=46.8
Q ss_pred HHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHH
Q 036267 17 KWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAG 96 (145)
Q Consensus 17 ~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a 96 (145)
..|.+.|+....+.+...-.-. ......+.+....++.+++.. .--++-++..+++.+++++++|.++.=.- +..-
T Consensus 7 ~~LqqMGItqW~Lr~P~~L~g~-e~~~i~lp~~~rLliV~~~~p-~~~~~~L~~dVLrsm~l~~~q~~~lt~eq--~~~L 82 (132)
T PRK06100 7 QYLQEMGISQWELIHPERLAGY-QPPTQDLDSDCKLLLVAPQCP-QNETALLFERILKSMQLELSQARHIEPEQ--LSQL 82 (132)
T ss_pred HHHHHcCCceEEecCCccccCc-ccccccCCccceEEEEcCCCC-CccchHHHHHHHHHcCCCHHHeeeeCHHH--HhhC
Confidence 4566777777777665311100 001122333344555555432 12223389999999999999999885333 2222
Q ss_pred HhcCCEEEEEcC
Q 036267 97 VAADLHVVGLAT 108 (145)
Q Consensus 97 ~~~G~~~i~v~~ 108 (145)
..-+..-++..+
T Consensus 83 ~~~~~~~~W~lg 94 (132)
T PRK06100 83 GYHSLEWVWFAG 94 (132)
T ss_pred CcCCCCeEEECC
Confidence 233444555543
No 485
>PRK06856 DNA polymerase III subunit psi; Validated
Probab=34.16 E-value=1e+02 Score=19.87 Aligned_cols=65 Identities=12% Similarity=0.210 Sum_probs=40.0
Q ss_pred HHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 036267 18 WVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERAKPFPDPYLKAIEILNVSKDHTFVFE 87 (145)
Q Consensus 18 ~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iG 87 (145)
.|.+.|+....+..-..-.-+ ....+.+....++.+++... - ...++..+++.+++++++|.++.
T Consensus 7 ~LqemGItqW~Lr~P~~L~g~---~~i~lp~~~rLliV~~~~~~-~-~~~L~~dVLrsl~L~~~q~~~lt 71 (128)
T PRK06856 7 LLQQLGITQWVLRRPGVLQGE---IAISLPEHIRLVIVAEELPA-L-TDPLLQDVLRSLTLSPDQVLCLT 71 (128)
T ss_pred HHHHcCCceEEecCccccCCC---ccccCCccceEEEEeCCCCc-c-cChHHHHHHHHcCCCHHHeeeeC
Confidence 466777777777765322111 11234444455565555321 1 22389999999999999999875
No 486
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=34.16 E-value=40 Score=22.27 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHHhCCCcEEEEeCC
Q 036267 9 LNGLDNVKKWVEGCGLKRAAVTNS 32 (145)
Q Consensus 9 ~~g~~~~l~~l~~~g~~~~i~s~~ 32 (145)
.|.+.|+|+..++.|++++.|+..
T Consensus 90 v~sl~eLl~~a~e~GVk~~AC~ms 113 (148)
T PF13686_consen 90 VPSLEELLEMAKELGVKFYACSMS 113 (148)
T ss_dssp ---HHHHHHHHHHCCEEEEEEHHH
T ss_pred CCCHHHHHHHHHHCCCEEEEehhh
Confidence 467899999999999999999765
No 487
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=34.15 E-value=2.1e+02 Score=21.92 Aligned_cols=70 Identities=10% Similarity=0.103 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCCCCcEEEEecCH--HhHHHHHhcCCEEEEEcCCCChHHhhccc---cceeecCCCChhHHHHhh
Q 036267 68 PYLKAIEILNVSKDHTFVFEDSV--SGIKAGVAADLHVVGLATRNPERLLLDAK---ASFIIKDYEDPKLWAALE 137 (145)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~iGD~~--~Di~~a~~~G~~~i~v~~g~~~~~~~~~~---~~~~~~~l~e~~~~~~~~ 137 (145)
.+..+++.+....=.+-.+|.+. .=+.+|+.-|.+|+.|........-.... -..+++++.++....+.+
T Consensus 6 ~ileil~~Y~~~~i~Iat~gSHSaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~~f~dil~~~iqe 80 (361)
T COG1759 6 EILEILENYDLEDITIATIGSHSALQILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVDKFSDILNEEIQE 80 (361)
T ss_pred HHHHHHHhccccceEEEEeecchHHHHhhhHHhcCCcEEEEEecCccchHHhhchhheEEEechhHHHhhHHHHH
Confidence 45667777766555666788665 46788999999999998764443333321 345788888875443333
No 488
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=34.15 E-value=54 Score=22.53 Aligned_cols=84 Identities=8% Similarity=-0.001 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccCC--CCCh----HHHHHHHHHcCCCCCcEEEE
Q 036267 13 DNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECERA--KPFP----DPYLKAIEILNVSKDHTFVF 86 (145)
Q Consensus 13 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~--kp~~----~~~~~~~~~~~~~~~~~~~i 86 (145)
.+.|+.+++.|+++++---+........+..+..+ .+--....... .+.. ..+...++.+| -+++.=
T Consensus 137 ~~~l~~l~~~G~~i~ld~~g~~~~~~~~l~~l~~~----~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~---~~via~ 209 (236)
T PF00563_consen 137 LENLRRLRSLGFRIALDDFGSGSSSLEYLASLPPD----YIKLDGSLVRDLSDEEAQSLLQSLINLAKSLG---IKVIAE 209 (236)
T ss_dssp HHHHHHHHHCT-EEEEEEETSTCGCHHHHHHHCGS----EEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT----EEEEE
T ss_pred HHHHHHHHhcCceeEeeeccCCcchhhhhhhcccc----cceeecccccccchhhHHHHHHHHHHHhhccc---ccccee
Confidence 47888999999999886332222222224433322 22111111100 1111 12233444444 346655
Q ss_pred e-cCHHhHHHHHhcCCEE
Q 036267 87 E-DSVSGIKAGVAADLHV 103 (145)
Q Consensus 87 G-D~~~Di~~a~~~G~~~ 103 (145)
| ++..+.+.+++.|+..
T Consensus 210 gVe~~~~~~~l~~~G~~~ 227 (236)
T PF00563_consen 210 GVESEEQLELLKELGVDY 227 (236)
T ss_dssp CE-SHHHHHHHHHTTESE
T ss_pred ecCCHHHHHHHHHcCCCE
Confidence 5 7778999999999653
No 489
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=33.92 E-value=57 Score=24.55 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=21.1
Q ss_pred cccCCHHHHHHHHHhCCCcEEEEe
Q 036267 7 KALNGLDNVKKWVEGCGLKRAAVT 30 (145)
Q Consensus 7 ~~~~g~~~~l~~l~~~g~~~~i~s 30 (145)
..||+.+++++.|+++|+++.+..
T Consensus 61 ~~fPdp~~m~~~l~~~g~~~~~~~ 84 (339)
T cd06604 61 ERFPDPKELIKELHEQGFKVVTII 84 (339)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEE
Confidence 468999999999999999998754
No 490
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=33.72 E-value=1e+02 Score=22.08 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=31.6
Q ss_pred CcccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeEecCcccC
Q 036267 6 LKALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAIIIGDECER 61 (145)
Q Consensus 6 ~~~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~ 61 (145)
+..++.+.++++.|++.|++++..+..... .. +....+....-.+++++..+.
T Consensus 73 i~~~~~~~~~i~~lk~~g~~i~at~~~~~a--~~-l~~~d~~~p~alV~GnE~~Gl 125 (229)
T PRK11081 73 VKTHRTIGDAVAHLKGQGMQILATHLSDTA--VD-FREIDYTRPTCILMGQEKTGI 125 (229)
T ss_pred EEEeCCHHHHHHHHHhCCCEEEEEeCCCCC--cc-HhHhcccCCeEEEECCCCCCC
Confidence 345678999999999999988877643211 01 122233334455666666543
No 491
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=33.64 E-value=1.1e+02 Score=19.72 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=5.5
Q ss_pred HHHHHHHHHcCC
Q 036267 67 DPYLKAIEILNV 78 (145)
Q Consensus 67 ~~~~~~~~~~~~ 78 (145)
+.....++++++
T Consensus 76 ~~~~~~~~~~~~ 87 (154)
T PRK09437 76 EKLSRFAEKELL 87 (154)
T ss_pred HHHHHHHHHhCC
Confidence 334444455544
No 492
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=33.61 E-value=1.2e+02 Score=19.66 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=27.2
Q ss_pred ccCCHHHHHHHHHhC--CCcEEEEeCCCh--HHHHHHHHHcCC
Q 036267 8 ALNGLDNVKKWVEGC--GLKRAAVTNSPR--ANAELMITKLGL 46 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~--g~~~~i~s~~~~--~~~~~~l~~~~l 46 (145)
..+...++++.+++. ++.+.+.||... ......+...|.
T Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~ 99 (204)
T cd01335 57 LYPELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGL 99 (204)
T ss_pred ccHhHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCC
Confidence 344788899999988 899999998864 333344444443
No 493
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=33.40 E-value=44 Score=21.91 Aligned_cols=90 Identities=11% Similarity=0.014 Sum_probs=51.5
Q ss_pred ccCCHHHHHHHHHhCCCcEEEEeCCChHHHHHHHHHcCCcCccceeE--ecCcccCCCCChH-----HHHHHHHHcCCCC
Q 036267 8 ALNGLDNVKKWVEGCGLKRAAVTNSPRANAELMITKLGLSGFFEAII--IGDECERAKPFPD-----PYLKAIEILNVSK 80 (145)
Q Consensus 8 ~~~g~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~i~--~~~~~~~~kp~~~-----~~~~~~~~~~~~~ 80 (145)
+.+.+..+++..+++|++++.+...+.. ....++.+. ..++....|+.++ .+...+++.|+
T Consensus 21 ~~~~i~~l~~~ar~~g~pVi~~~~~~~~----------~g~~~~~l~~~~~~~~vi~K~~~saf~~t~L~~~L~~~gi-- 88 (157)
T cd01012 21 LINNTVKLAKAAKLLDVPVILTEQYPKG----------LGPTVPELREVFPDAPVIEKTSFSCWEDEAFRKALKATGR-- 88 (157)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeeCCCC----------CCCchHHHHhhCCCCCceecccccCcCCHHHHHHHHhcCC--
Confidence 4566778888889999999988654310 001111110 0111112233222 35567777676
Q ss_pred CcEEEEecCHH-----hHHHHHhcCCEEEEEcCC
Q 036267 81 DHTFVFEDSVS-----GIKAGVAADLHVVGLATR 109 (145)
Q Consensus 81 ~~~~~iGD~~~-----Di~~a~~~G~~~i~v~~g 109 (145)
+++++.|=..+ =...|...|.+.+.+...
T Consensus 89 ~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da 122 (157)
T cd01012 89 KQVVLAGLETHVCVLQTALDLLEEGYEVFVVADA 122 (157)
T ss_pred CEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeC
Confidence 57888886542 344567789998888765
No 494
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=33.37 E-value=55 Score=22.38 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=19.0
Q ss_pred CHHHHHHHHHhCCCcEEEEeCCC
Q 036267 11 GLDNVKKWVEGCGLKRAAVTNSP 33 (145)
Q Consensus 11 g~~~~l~~l~~~g~~~~i~s~~~ 33 (145)
-+.+|++.+++.|++++|.|+..
T Consensus 111 ~~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 111 FLQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred HHHHHHHHHHHhCCeEEEEcCcc
Confidence 46788888888899999999873
No 495
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=33.31 E-value=51 Score=24.85 Aligned_cols=25 Identities=20% Similarity=0.237 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHhCCCcEEEEeCCCh
Q 036267 10 NGLDNVKKWVEGCGLKRAAVTNSPR 34 (145)
Q Consensus 10 ~g~~~~l~~l~~~g~~~~i~s~~~~ 34 (145)
+++.++++.++++|.+++.+||...
T Consensus 106 ~e~i~al~~ak~~Ga~~I~IT~~~~ 130 (340)
T PRK11382 106 EEVIKALELGRACGALTAAFTKRAD 130 (340)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCC
Confidence 4678899999999999999998753
No 496
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=33.21 E-value=46 Score=22.94 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=17.8
Q ss_pred HHHHHHHHcCCCCCcEEEEecCHHh
Q 036267 68 PYLKAIEILNVSKDHTFVFEDSVSG 92 (145)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~iGD~~~D 92 (145)
-..++.++....+.+++++|||...
T Consensus 20 ~~~~~~~~~~~~~~~iv~lGDSit~ 44 (214)
T cd01820 20 RHERFVAEAKQKEPDVVFIGDSITQ 44 (214)
T ss_pred HHHHHHHHhhcCCCCEEEECchHhh
Confidence 3445555555667889999999954
No 497
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=33.21 E-value=63 Score=20.10 Aligned_cols=15 Identities=7% Similarity=-0.126 Sum_probs=10.8
Q ss_pred ChHHHHHHHHHcCCC
Q 036267 65 FPDPYLKAIEILNVS 79 (145)
Q Consensus 65 ~~~~~~~~~~~~~~~ 79 (145)
.++.....+++.++.
T Consensus 72 ~~~~~~~~~~~~~~~ 86 (126)
T cd03012 72 DLANVKSAVLRYGIT 86 (126)
T ss_pred CHHHHHHHHHHcCCC
Confidence 466777778888774
No 498
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=33.17 E-value=2.3e+02 Score=21.91 Aligned_cols=98 Identities=18% Similarity=0.201 Sum_probs=52.7
Q ss_pred ccCCHHH--HHHHHHhCCCcEEEEeCCChHHH--H---HHHHHcCCcCccceeEecCcccCCCCC--hHHHHHHHHHcCC
Q 036267 8 ALNGLDN--VKKWVEGCGLKRAAVTNSPRANA--E---LMITKLGLSGFFEAIIIGDECERAKPF--PDPYLKAIEILNV 78 (145)
Q Consensus 8 ~~~g~~~--~l~~l~~~g~~~~i~s~~~~~~~--~---~~l~~~~l~~~f~~i~~~~~~~~~kp~--~~~~~~~~~~~~~ 78 (145)
.-+|+.+ .+..+.. +.+++|+|+...... . ..++..|... ..+.-.+. ...|.- -..+...+-+.++
T Consensus 17 ig~gl~~~~~l~~~~~-~~k~~ivtd~~v~~~y~~~~~~~l~~~g~~v--~~~~lp~G-E~~Ksl~~~~~i~~~ll~~~~ 92 (360)
T COG0337 17 IGSGLLSDAELAELLA-GRKVAIVTDETVAPLYLEKLLATLEAAGVEV--DSIVLPDG-EEYKSLETLEKIYDALLEAGL 92 (360)
T ss_pred EeCCcccchhhhhhcc-CCeEEEEECchhHHHHHHHHHHHHHhcCCee--eEEEeCCC-cccccHHHHHHHHHHHHHcCC
Confidence 3345554 4444443 359999999864333 2 3333333221 22222221 223332 2233444555688
Q ss_pred CCCc-EEEEecCH-HhHHHHHh----cCCEEEEEcCC
Q 036267 79 SKDH-TFVFEDSV-SGIKAGVA----ADLHVVGLATR 109 (145)
Q Consensus 79 ~~~~-~~~iGD~~-~Di~~a~~----~G~~~i~v~~g 109 (145)
+++. ++.+|-+. -|+..-.. -|+++|-|.+.
T Consensus 93 ~R~s~iialGGGvigDlaGF~Aaty~RGv~fiqiPTT 129 (360)
T COG0337 93 DRKSTLIALGGGVIGDLAGFAAATYMRGVRFIQIPTT 129 (360)
T ss_pred CCCcEEEEECChHHHHHHHHHHHHHHcCCCeEeccch
Confidence 6654 55888888 68766554 48999988765
No 499
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.88 E-value=63 Score=18.85 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=32.5
Q ss_pred cCCCCChHHHHHHHHHcCCCCCcEEEEecCHHhHHHHHhcC
Q 036267 60 ERAKPFPDPYLKAIEILNVSKDHTFVFEDSVSGIKAGVAAD 100 (145)
Q Consensus 60 ~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~~G 100 (145)
...-|....+..+.+++.+++....+|.+.--.|..|+.+|
T Consensus 34 pestpftavlkfaaeefkvpaatsaiitndgiginpaq~ag 74 (94)
T KOG3483|consen 34 PESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAG 74 (94)
T ss_pred CCCCchHHHHHHHHHHccCCccceeEEecCccccCcccccc
Confidence 44567778888899999999888888877666777777777
No 500
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=32.86 E-value=48 Score=22.36 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=31.1
Q ss_pred CCcEEEEecCHH------h----HHHHHhcCCEEEEEcCC-CChHHhhc----cccceeecCCCChhH
Q 036267 80 KDHTFVFEDSVS------G----IKAGVAADLHVVGLATR-NPERLLLD----AKASFIIKDYEDPKL 132 (145)
Q Consensus 80 ~~~~~~iGD~~~------D----i~~a~~~G~~~i~v~~g-~~~~~~~~----~~~~~~~~~l~e~~~ 132 (145)
+.-++++.|+.+ + ++.+++.|+....|.-| .....+.. ....+...++.++..
T Consensus 110 ~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~~~~~~~~~~~~~~l~~ 177 (186)
T cd01480 110 NKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIACDGKSALYRENFAELLW 177 (186)
T ss_pred ceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCccchHHHHHHHcCCcchhhhcchhhhcc
Confidence 456788899853 1 34567889985555544 33333332 122367777777654
Done!