BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036268
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 176 VDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
VD+LL+P++L G HW +A VDFRK + YDS+
Sbjct: 115 VDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM 146
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 176 VDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
VD+LL+P++L G HW +A VDFRK + YDS+
Sbjct: 107 VDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM 138
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 176 VDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
VD+LL+P++L G HW +A VDFRK + YDS+
Sbjct: 103 VDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM 134
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 176 VDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
VD+LL+P++L G HW +A VDFRK + YDS+
Sbjct: 103 VDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM 134
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 176 VDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
VD+LL+P++L G HW +A VDFRK + YDS+
Sbjct: 103 VDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM 134
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 176 VDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
VD+LL+P++L G HW +A VDFRK + YDS+
Sbjct: 82 VDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM 113
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 96 DESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIP-----DWVHKVFLNQLWNN--GDCA 148
D+ ++ L + E + +TV+D+ P D + + F+ + + A
Sbjct: 11 DDDQVQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVA 70
Query: 149 VDSLVFEDHLNNYLCGRQHTMSKSMTDVDML---LIPVNLDGAHWVVARVDFRKNKVWIY 205
+S + + G + M + T +D L P+NL+ +HW + +D +K +
Sbjct: 71 FNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYV 130
Query: 206 DSL 208
DSL
Sbjct: 131 DSL 133
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 96 DESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIP-----DWVHKVFLNQLWNN--GDCA 148
D+ ++ L + E + +TV+D+ P D + + F+ + + A
Sbjct: 11 DDDQVQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVA 70
Query: 149 VDSLVFEDHLNNYLCGRQHTMSKSMTDVDML---LIPVNLDGAHWVVARVDFRKNKVWIY 205
+S + + G + M + T +D L P+NL+ +HW + +D +K +
Sbjct: 71 FNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYV 130
Query: 206 DSL 208
DSL
Sbjct: 131 DSL 133
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 134 HKVFLNQLWNNGDCAVD-SLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVV 192
+ V L L + V S V+E H + L GRQ T S T +D I N HW+
Sbjct: 149 NAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIA 208
Query: 193 ARVDFRKNKV 202
R ++
Sbjct: 209 PRATITGYRI 218
>pdb|3T1W|A Chain A, Structure Of The Four-Domain Fragment Fn7b89 Of Oncofetal
Fibronectin
Length = 375
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 134 HKVFLNQLWNNGDCAVD-SLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVV 192
+ V L L + V S V+E H + L GRQ T S T +D I N HW+
Sbjct: 241 NAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIA 300
Query: 193 ARVDFRKNKV 202
R ++
Sbjct: 301 PRATITGYRI 310
>pdb|3IT3|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
pdb|3IT3|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
Length = 342
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 66 KTKNKIPRIVQWKPMASSRINFAEVYSFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDY 125
KTK P +W+ + +RI S ND +GDVL + + K K D
Sbjct: 155 KTKEAAPNFAKWQQILGNRI------SGLNDVITVGDVLIVAQAHGKPLPKGLSQEDADQ 208
Query: 126 MPSIPDW 132
+ ++ DW
Sbjct: 209 IIALTDW 215
>pdb|3IT0|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With Phosphate
pdb|3IT0|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With Phosphate
pdb|3IT1|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With L(+)-Tartrate
pdb|3IT1|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With L(+)-Tartrate
pdb|3IT2|A Chain A, Crystal Structure Of Ligand-Free Francisella Tularensis
Histidine Acid Phosphatase
pdb|3IT2|B Chain B, Crystal Structure Of Ligand-Free Francisella Tularensis
Histidine Acid Phosphatase
Length = 342
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 66 KTKNKIPRIVQWKPMASSRINFAEVYSFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDY 125
KTK P +W+ + +RI S ND +GDVL + + K K D
Sbjct: 155 KTKEAAPNFAKWQQILGNRI------SGLNDVITVGDVLIVAQAHGKPLPKGLSQEDADQ 208
Query: 126 MPSIPDW 132
+ ++ DW
Sbjct: 209 IIALTDW 215
>pdb|4E3W|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Cryoprotected With Proline
pdb|4E3W|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Cryoprotected With Proline
Length = 342
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 66 KTKNKIPRIVQWKPMASSRINFAEVYSFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDY 125
KTK P +W+ + +RI S ND +GDVL + + K K D
Sbjct: 155 KTKEAAPNFAKWQQILGNRI------SGLNDVITVGDVLIVAQAHGKPLPKGLSQEDADQ 208
Query: 126 MPSIPDW 132
+ ++ DW
Sbjct: 209 IIALTDW 215
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 137 FLNQLWNNGDCAVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVD 196
QL NNGD +D + + + T+S D+D I +D ++ VD
Sbjct: 319 IFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVS----DLDSSQIEAEVD---HILQSVD 371
Query: 197 FRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFPRW 231
F +N Y +T C DK+ L + L F ++
Sbjct: 372 FDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQF 406
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 140 QLWNNGDCAVDSLVFEDHLNNYLCGRQHTM---SKSMTDVDMLLIPVNLDGAHWVVARVD 196
QL NNGD +D + G + M +++D+D I +D ++ VD
Sbjct: 48 QLDNNGDGQLDR-------KELIEGYRKLMQWKGDTVSDLDSSQIEAEVD---HILQSVD 97
Query: 197 FRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFPRW 231
F +N Y +T C DK+ L + L F ++
Sbjct: 98 FDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQF 132
>pdb|3S25|A Chain A, Crystal Structure Of A Hypothetical 7-Bladed
Beta-Propeller-Like Protein (Eubrec_1955) From
Eubacterium Rectale Atcc 33656 At 1.88 A Resolution
Length = 302
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 22/87 (25%)
Query: 35 NIEKYNLYGFTSGVQAWIYEAIGGLPSTCVVKTKNKIPRIVQWKPMASSR---INFAEVY 91
NIE YN+YG Y+ G P+ CVVK +K +A IN Y
Sbjct: 226 NIEHYNVYG-----SLIFYQRGGDNPALCVVKNDG-----TGFKELAKGEFCNINVTSQY 275
Query: 92 SFFND---------ESRIGDVLQTLEP 109
+F D ++ D ++ L+P
Sbjct: 276 VYFTDFVSNKEYCTSTQNPDTIKALQP 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,079,724
Number of Sequences: 62578
Number of extensions: 333155
Number of successful extensions: 667
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 17
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)