BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036268
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1
Length = 645
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 176 VDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
VD+LL+P++L G HW +A VDFRK + YDS+
Sbjct: 522 VDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM 553
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2
Length = 644
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 176 VDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
VD+LL+P++L G HW +A VDFRK + YDS+
Sbjct: 521 VDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM 552
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1
Length = 640
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 176 VDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
VD+LL+P++L G HW +A VDFR+ + YDS+
Sbjct: 517 VDILLVPIHL-GVHWCLAVVDFRRKSITYYDSM 548
>sp|A4QL60|RK2_DRANE 50S ribosomal protein L2, chloroplastic OS=Draba nemorosa GN=rpl2-A
PE=3 SV=1
Length = 274
Score = 37.7 bits (86), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 146 DCAVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIY 205
+ AVDS V + NN +CG QH K ++ + G + ++DFR+N IY
Sbjct: 15 NGAVDSQVKSNPRNNLICG-QHHCGKGRNARGIITVRHRGGGHKRLYRKIDFRRNAKDIY 73
Query: 206 DSLLTF 211
++T
Sbjct: 74 GRIVTI 79
>sp|A4QJX2|RK2_OLIPU 50S ribosomal protein L2, chloroplastic OS=Olimarabidopsis pumila
GN=rpl2-A PE=3 SV=1
Length = 274
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 146 DCAVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIY 205
+ AVDS V + NN +CG QH K ++ G + ++DFR+N IY
Sbjct: 15 NGAVDSQVKSNPRNNLICG-QHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIY 73
Query: 206 DSLLTF 211
++T
Sbjct: 74 GRIVTI 79
>sp|P56791|RK2_ARATH 50S ribosomal protein L2, chloroplastic OS=Arabidopsis thaliana
GN=rpl2-A PE=2 SV=1
Length = 274
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 146 DCAVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIY 205
+ AVDS V + NN +CG QH K ++ G + ++DFR+N IY
Sbjct: 15 NGAVDSQVKSNPRNNLICG-QHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIY 73
Query: 206 DSLLTF 211
++T
Sbjct: 74 GRIVTI 79
>sp|Q14F95|RK2A_POPAL 50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A
PE=3 SV=1
Length = 275
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 146 DCAVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIY 205
+ AVDS V + NN + G QH SK ++ G + ++DFR+N+ +IY
Sbjct: 15 NGAVDSQVKSNTRNNLIYG-QHRCSKGRNARGIITARHRGGGHKRLYRKIDFRRNEKYIY 73
Query: 206 DSLLTF 211
++T
Sbjct: 74 GRIVTI 79
>sp|Q14FB6|RK2B_POPAL 50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B
PE=3 SV=1
Length = 274
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 146 DCAVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIY 205
+ AVDS V + NN + G QH SK ++ G + ++DFR+N+ +IY
Sbjct: 15 NGAVDSQVKSNTRNNLIYG-QHRCSKGRNARGIITARHRGGGHKRLYRKIDFRRNEKYIY 73
Query: 206 DSLLTF 211
++T
Sbjct: 74 GRIVTI 79
>sp|A4GYV2|RK2_POPTR 50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa
GN=rpl2-A PE=3 SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 146 DCAVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIY 205
+ AVDS V + NN + G QH K ++ G + ++DFR+N+ +IY
Sbjct: 15 NGAVDSQVKSNTRNNLIYG-QHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNEKYIY 73
Query: 206 DSLLTF 211
++T
Sbjct: 74 GRIVTI 79
>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2
SV=3
Length = 697
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 177 DMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
D++L+PV+L G HW +A +D + K+ YDSL
Sbjct: 574 DIVLVPVHL-GMHWCMAVIDMGEKKIEFYDSL 604
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana
GN=ESD4 PE=1 SV=1
Length = 489
Score = 34.7 bits (78), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 166 QHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
Q + ++ D DM+ +P++ G HW +A ++ R++K+ DSL
Sbjct: 358 QRKLGYALIDCDMIFVPIHR-GVHWTLAVINNRESKLLYLDSL 399
>sp|P55310|CATA_SECCE Catalase OS=Secale cereale PE=2 SV=1
Length = 492
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 93 FFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFL 138
F D + DV+ +PN K ++YW V D++P P+ +H F
Sbjct: 143 FIRDGIKFPDVIHAFKPNPKSHVQEYW-RVFDFLPHHPESLHTFFF 187
>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP1 PE=1 SV=1
Length = 621
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 96 DESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIP-----DWVHKVFLNQLWNN--GDCA 148
D+ ++ L + E + +TV+D+ P D + + F+ + + A
Sbjct: 411 DDDQVQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVA 470
Query: 149 VDSLVFEDHLNNYLCGRQHTMSKSMTDVDML---LIPVNLDGAHWVVARVDFRKNKVWIY 205
+S + + G + M + T +D L P+NL+ +HW + +D +K +
Sbjct: 471 FNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYV 530
Query: 206 DSL 208
DSL
Sbjct: 531 DSL 533
>sp|Q6GI31|ATL_STAAR Bifunctional autolysin OS=Staphylococcus aureus (strain MRSA252)
GN=atl PE=3 SV=1
Length = 1257
Score = 32.3 bits (72), Expect = 3.6, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 21 NEKFKTTRLKNLDHNIEKYNLYGFTSGVQAWI---YEAIGGLPSTCVVKTKNKIPRIVQW 77
N+ FK T+ + +D +I LYG +G WI Y A+ P V + K +
Sbjct: 725 NQTFKATKQQQIDKSIY---LYGTVNGKSGWISKAYLAVPAAPKKAVAQPKTAVKAYAVT 781
Query: 78 KPMASSRINFAEVYSFFNDESRIGDVLQTLEPNSKESSKKYWLT 121
KP + ++ N R +T + +K + + +++T
Sbjct: 782 KPQTTQTVSKIAQVKPNNTGIRASVYEKTAKNGAKYADRTFYVT 825
>sp|Q5B1X5|UTP10_EMENI U3 small nucleolar RNA-associated protein 10 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=utp10 PE=3 SV=1
Length = 1801
Score = 32.0 bits (71), Expect = 3.9, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 66 KTKNKIPRIVQWKPMASSRINFAEVYSFFNDESRIGD----VLQTLEPNSKESSKKYWLT 121
+TK P + +W+ M+ + AEV+ ++ + D VL+T+ P K+S T
Sbjct: 730 RTKELEPLLKKWRDMSEQEV--AEVHE--KEQISVSDFEAQVLKTVTPKEKDSINLLLST 785
Query: 122 VKDYMPSI-PDWVHKVF--LNQLW 142
V Y PS+ +V VF ++++W
Sbjct: 786 VTPYSPSLRASFVSSVFNRISEIW 809
>sp|O05406|YRHP_BACSU Uncharacterized membrane protein YrhP OS=Bacillus subtilis (strain
168) GN=yrhP PE=3 SV=2
Length = 210
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 38 KYNLYGFTSGVQAWIYEAIGGLPSTCVVKTKNKIPRIVQWKPMASSRINFAEVYSFFNDE 97
+YN+ G +G+ W AI GL VV K+ I K + ++ + + V SFF
Sbjct: 38 RYNILGLATGLSFWTVIAILGL---SVVIAKSVI-LFTTIKYLGAAYLIYLGVKSFFAKS 93
Query: 98 SRIGDVLQTLEPNSKESSKKYWLT 121
D +Q+ N S K+Y+ T
Sbjct: 94 MFSLDDMQSQAKNMASSPKRYYKT 117
>sp|P18123|CATA3_MAIZE Catalase isozyme 3 OS=Zea mays GN=CAT3 PE=2 SV=2
Length = 496
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 93 FFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFL 138
F D + DV+ +PN + ++YW V D++ +P+ +H F
Sbjct: 146 FIRDGIKFPDVIHAFKPNPRSHVQEYW-RVFDFLSHLPESLHTFFF 190
>sp|P02751|FINC_HUMAN Fibronectin OS=Homo sapiens GN=FN1 PE=1 SV=4
Length = 2386
Score = 30.8 bits (68), Expect = 8.7, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 151 SLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVAR 194
S V+E H + L GRQ T S T +D I N HW+ R
Sbjct: 1339 SSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPR 1382
>sp|Q42547|CATA3_ARATH Catalase-3 OS=Arabidopsis thaliana GN=CAT3 PE=1 SV=3
Length = 492
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 93 FFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPD 131
F D + DV+ L+PN K + ++YW + DYM +P+
Sbjct: 144 FIRDGIQFPDVVHALKPNPKTNIQEYW-RILDYMSHLPE 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,846,253
Number of Sequences: 539616
Number of extensions: 3966498
Number of successful extensions: 8464
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 8454
Number of HSP's gapped (non-prelim): 24
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)