Query 036268
Match_columns 249
No_of_seqs 126 out of 263
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 18:58:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 99.8 2.1E-20 7.1E-25 170.7 5.9 141 77-229 30-235 (323)
2 1euv_A ULP1 protease; SUMO hyd 99.8 1.5E-19 5E-24 152.9 9.2 113 102-214 14-139 (221)
3 2bkr_A Sentrin-specific protea 99.8 1.6E-19 5.6E-24 150.8 6.3 144 73-247 4-158 (212)
4 2xph_A Sentrin-specific protea 99.7 7.6E-19 2.6E-23 150.0 6.1 126 75-229 39-166 (238)
5 1th0_A SMT3-, sentrin-specific 99.7 1.9E-18 6.5E-23 146.2 7.8 129 72-229 24-154 (226)
6 2oix_A Xanthomonas outer prote 99.6 3.8E-16 1.3E-20 130.0 5.2 98 92-214 3-103 (186)
7 4ekf_A Adenain; alpha and beta 24.6 1.1E+02 0.0037 26.9 5.2 29 185-213 50-78 (204)
8 1cxq_A Avian sarcoma virus int 22.9 2.3E+02 0.008 20.9 6.3 36 171-207 11-46 (162)
9 1c0m_A Protein (integrase); HI 15.7 3.7E+02 0.013 21.6 6.4 36 170-206 9-44 (238)
10 2kfp_A Pspto_3016 protein; alp 15.7 1.3E+02 0.0044 23.2 3.5 34 84-124 61-96 (125)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=99.80 E-value=2.1e-20 Score=170.74 Aligned_cols=141 Identities=18% Similarity=0.178 Sum_probs=100.1
Q ss_pred ecccccceeeeeeeh--hhccCcccchhhhhhcccCccccccceeeeecCCCCCCchhhHHHhhhhhhcCCCcccccee-
Q 036268 77 WKPMASSRINFAEVY--SFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDSLV- 153 (249)
Q Consensus 77 ~~~~~~~~~n~~~~~--~~f~~~~r~~~v~q~Lq~~~k~~~kr~~lT~~d~~~~~p~wv~~~F~nq~~~~g~c~~~~l~- 153 (249)
..|+...+-.+++|. .|+||+. |+++++.|+... .. ++..+. -+.+|+|||..+-..+.-..-.-+
T Consensus 30 k~~i~it~~Dl~~L~~~~wLND~I-InFyl~~L~~e~--~~-------~~~~~r-~h~FnSFFy~kL~~~~~~~~~~~~~ 98 (323)
T 3eay_A 30 KGGLGVTNEDLECLEEGEFLNDVI-IDFYLKYLILEK--AS-------DELVER-SHIFSSFFYKCLTRKENNLTEDNPN 98 (323)
T ss_dssp SSCEEEEHHHHHTTSTTCCCCHHH-HHHHHHHHHHHT--SC-------HHHHHT-EEECCTHHHHHHSCC--------CC
T ss_pred CCceEEEHHHHHhhCCCCCcCHHH-HHHHHHHHHhhh--cc-------ccccCc-EEEEchHHHHHHHhccccccccccc
Confidence 566777788888887 7999999 999999884210 00 000011 134567777777654321000000
Q ss_pred ccccccccccccccccccCceeecEEEEeeeCCCCeEEEEEEEcCCC---------------------------------
Q 036268 154 FEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKN--------------------------------- 200 (249)
Q Consensus 154 ~~d~l~GY~~VkRWTkkVDIFskDlILIPInv~n~HW~LaVId~r~K--------------------------------- 200 (249)
.....+||++|+|||+++|||++|+||||||.+ +||+|||||++.+
T Consensus 99 ~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~-~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 177 (323)
T 3eay_A 99 LSMAQRRHKRVRTWTRHINIFNKDYIFVPVNES-SHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLR 177 (323)
T ss_dssp SCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEET-TEEEEEEEECTTCSSCBCC---------------------------
T ss_pred chhHHHHHHHHHHHHhhcccccCCEEEEecCCC-CceEEEEEecCCcccccccccccccccccccccccccccccccccc
Confidence 011236899999999999999999999999995 9999999999853
Q ss_pred -----------------------------eEEEEeCCCCCCchhHHHHHHHHHHHHhh
Q 036268 201 -----------------------------KVWIYDSLLTFCDDKRYKLKFKLLEVIFP 229 (249)
Q Consensus 201 -----------------------------~I~YYDSLgg~n~~~~~~li~~yLak~l~ 229 (249)
+|.||||||+.......+.+.+||....-
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~ 235 (323)
T 3eay_A 178 TTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWE 235 (323)
T ss_dssp ----------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHH
Confidence 69999999998777788888888887544
No 2
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=99.79 E-value=1.5e-19 Score=152.91 Aligned_cols=113 Identities=19% Similarity=0.363 Sum_probs=80.6
Q ss_pred hhhhhcccCcccc---ccceeeeecCCCCCCc-hhhHHHhhhhh----hc-CCCccccceecccc--cccccccccccc-
Q 036268 102 DVLQTLEPNSKES---SKKYWLTVKDYMPSIP-DWVHKVFLNQL----WN-NGDCAVDSLVFEDH--LNNYLCGRQHTM- 169 (249)
Q Consensus 102 ~v~q~Lq~~~k~~---~kr~~lT~~d~~~~~p-~wv~~~F~nq~----~~-~g~c~~~~l~~~d~--l~GY~~VkRWTk- 169 (249)
.|...|.+..... ..+..||.+|+..+.| .|||+...|.+ .. ..+++.|+.++... ..||.+|+|||+
T Consensus 14 ~v~~~l~~~~~~~l~~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~~~~~~f~s~f~~~l~~~~~~~v~rw~~~ 93 (221)
T 1euv_A 14 QVQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMKR 93 (221)
T ss_dssp HHHHHHTCSSCCEEEEETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHSTTEEECCTHHHHHHHHHTGGGTTTTTGG
T ss_pred HHHHHhcCCCCeeeecCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCCeEEEEcHHHHHhhhhccHHHHHHHHh
Confidence 3445555433311 5566778888887754 68884433333 32 34455444333222 258999999998
Q ss_pred -ccCceeecEEEEeeeCCCCeEEEEEEEcCCCeEEEEeCCCCCCch
Q 036268 170 -SKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDD 214 (249)
Q Consensus 170 -kVDIFskDlILIPInv~n~HW~LaVId~r~K~I~YYDSLgg~n~~ 214 (249)
++++|++|+|+||||.++.||+|+|||+++++|.|||||++....
T Consensus 94 ~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~ 139 (221)
T 1euv_A 94 KKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNA 139 (221)
T ss_dssp GTSCGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCH
T ss_pred ccCCcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcc
Confidence 789999999999999977999999999999999999999976544
No 3
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=99.78 E-value=1.6e-19 Score=150.81 Aligned_cols=144 Identities=14% Similarity=0.154 Sum_probs=93.0
Q ss_pred ceeeecccccceeeeeeeh--hhccCcccchhhhhhcccCccccccceeeeecCCCCCCchhhH---HHhhhhhhcCCCc
Q 036268 73 RIVQWKPMASSRINFAEVY--SFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVH---KVFLNQLWNNGDC 147 (249)
Q Consensus 73 riv~~~~~~~~~~n~~~~~--~~f~~~~r~~~v~q~Lq~~~k~~~kr~~lT~~d~~~~~p~wv~---~~F~nq~~~~g~c 147 (249)
.++.-.++...+=.++++. .|.||+. |+++++.|++..... -.+.+ ..++ +||+.+
T Consensus 4 ~~l~~~~~~l~~~Dl~~L~~~~wLND~i-I~fy~~~L~~~~~~~----------~~~~~-~~~~p~~s~f~~~------- 64 (212)
T 2bkr_A 4 VVLSYMDSLLRQSDVSLLDPPSWLNDHI-IGFAFEYFANSQFHD----------SSDHV-SFISPEVTQFIKC------- 64 (212)
T ss_dssp EEEEETTEEEEHHHHHTTSTTSCCBHHH-HHHHHHHHHHTTTGG----------GTTTE-EEECHHHHHHHHH-------
T ss_pred EEEEECCEEEeHHHHhhcCCCCCcCHHH-HHHHHHHHHHhhccC----------CCCcE-EEEChHHHHHHHh-------
Confidence 3555555655555666665 6777777 777777776654210 00111 1111 233321
Q ss_pred cccceeccccccccccccccccccCceeecEEEEeeeC------CCCeEEEEEEEcCCCeEEEEeCCCCCCchhHHHHHH
Q 036268 148 AVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNL------DGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKF 221 (249)
Q Consensus 148 ~~~~l~~~d~l~GY~~VkRWTkkVDIFskDlILIPInv------~n~HW~LaVId~r~K~I~YYDSLgg~n~~~~~~li~ 221 (249)
..+|+.|+|||+++|+|++|+||||||. ++.||+|+|||+++++|.|||||++.+... .+.++
T Consensus 65 ----------~~~~~~v~~~~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~-~~~l~ 133 (212)
T 2bkr_A 65 ----------TSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVH-AKQVA 133 (212)
T ss_dssp ----------CCCHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHH-HHHHH
T ss_pred ----------CCCHHHHHHHhcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHH-HHHHH
Confidence 2357889999999999999999999996 479999999999999999999999987543 34445
Q ss_pred HHHHHHhhhhhccceeeecCCCCCCC
Q 036268 222 KLLEVIFPRWLEYVGFYNIRPELRSA 247 (249)
Q Consensus 222 ~yLak~l~~il~~~s~Y~i~~~~~s~ 247 (249)
+.|...|........ +....-|+|.
T Consensus 134 ~~l~~~l~~~~~~~~-~~~~~~PqQ~ 158 (212)
T 2bkr_A 134 EKLEAFLGRKGDKLA-FVEEKAPAQQ 158 (212)
T ss_dssp HHHHHHHSCTTCCCC-EEECCCCCCS
T ss_pred HHHHHHhCCccccce-EeECCCCCCC
Confidence 555555544322111 2344556664
No 4
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=99.75 E-value=7.6e-19 Score=150.01 Aligned_cols=126 Identities=26% Similarity=0.426 Sum_probs=90.4
Q ss_pred eeecccccceeeeeeeh--hhccCcccchhhhhhcccCccccccceeeeecCCCCCCchhhHHHhhhhhhcCCCccccce
Q 036268 75 VQWKPMASSRINFAEVY--SFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDSL 152 (249)
Q Consensus 75 v~~~~~~~~~~n~~~~~--~~f~~~~r~~~v~q~Lq~~~k~~~kr~~lT~~d~~~~~p~wv~~~F~nq~~~~g~c~~~~l 152 (249)
++-+++...+-.+.++. .|.||+. |+++++.|++..... ..|. + +|||+||... +
T Consensus 39 ~~~~~~~l~~~Dl~~L~~~~wLND~i-I~fy~~~L~~~~~~~-------------~~~~-~--~~f~sff~~~------l 95 (238)
T 2xph_A 39 SEAFRLTITRKDIQTLNHLNWLNDEI-INFYMNMLMERSKEK-------------GLPS-V--HAFNTFFFTK------L 95 (238)
T ss_dssp EEETTEEECHHHHHTTSTTCCCCHHH-HHHHHHHHHHHTTST-------------TSCC-E--EECCTTTTHH------H
T ss_pred ecCCCcEEeHHHHhhcCCCCccCHHH-HHHHHHHHHHhhhhc-------------CCCc-e--eeeecHHHHH------h
Confidence 45567777777777776 6888877 788877776542110 1111 1 1333333211 1
Q ss_pred eccccccccccccccccccCceeecEEEEeeeCCCCeEEEEEEEcCCCeEEEEeCCCCCCchhHHHHHHHHHHHHhh
Q 036268 153 VFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFP 229 (249)
Q Consensus 153 ~~~d~l~GY~~VkRWTkkVDIFskDlILIPInv~n~HW~LaVId~r~K~I~YYDSLgg~n~~~~~~li~~yLak~l~ 229 (249)
...||.+|+|||+++|||++|+|+||||.+ .||+|+|||+++++|.|||||++.+.. ..+.+.++|.....
T Consensus 96 ----~~~~~~~v~~w~~~~~l~~~~~i~iPin~~-~HW~L~vi~~~~~~i~~~DSl~~~~~~-~~~~l~~~L~~e~~ 166 (238)
T 2xph_A 96 ----KTAGYQAVKRWTKKVDVFSVDILLVPIHLG-VHWCLAVVDFRKKNITYYDSMGGINNE-ACRILLQYLKQESI 166 (238)
T ss_dssp ----HTTCHHHHTTTTTTCCGGGSSEEEEEEEET-TEEEEEEEETTTTEEEEECTTCCCCHH-HHHHHHHHHHHHHH
T ss_pred ----hhcccHHHHHHhccCCcccCCEEEEcccCC-CceEEEEEEcccceEEEeecccCCCHH-HHHHHHHHHHHHHH
Confidence 124899999999999999999999999996 999999999999999999999998754 45566777766544
No 5
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=99.74 E-value=1.9e-18 Score=146.24 Aligned_cols=129 Identities=17% Similarity=0.277 Sum_probs=90.9
Q ss_pred cceeeecccccceeeeeeeh--hhccCcccchhhhhhcccCccccccceeeeecCCCCCCchhhHHHhhhhhhcCCCccc
Q 036268 72 PRIVQWKPMASSRINFAEVY--SFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAV 149 (249)
Q Consensus 72 ~riv~~~~~~~~~~n~~~~~--~~f~~~~r~~~v~q~Lq~~~k~~~kr~~lT~~d~~~~~p~wv~~~F~nq~~~~g~c~~ 149 (249)
.-++.-+++...+-.+.++. .|.||+. |+++++.|++..... . .+.+ ..+++||+.++.
T Consensus 24 ~~~~~~~~~~l~~~Dl~~L~~~~wLND~i-I~fy~~~L~~~~~~~---------~-~~~~-~~f~s~f~~~l~------- 84 (226)
T 1th0_A 24 EILSSAFKLRITRGDIQTLKNYHWLNDEV-INFYMNLLVERNKKQ---------G-YPAL-HVFSTFFYPKLK------- 84 (226)
T ss_dssp CEEEEETTEEEEHHHHGGGSTTCCCCHHH-HHHHHHHHHHHHHHH---------T-CCCE-EECCTTHHHHHH-------
T ss_pred ceeeccCCeEEEHHHHhhcCCCCccChHH-HHHHHHHHHHhhhhc---------c-CCcE-EEEeHHHHHHhh-------
Confidence 34566777777777777776 6777777 777777775432100 0 0111 111223333221
Q ss_pred cceeccccccccccccccccccCceeecEEEEeeeCCCCeEEEEEEEcCCCeEEEEeCCCCCCchhHHHHHHHHHHHHhh
Q 036268 150 DSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFP 229 (249)
Q Consensus 150 ~~l~~~d~l~GY~~VkRWTkkVDIFskDlILIPInv~n~HW~LaVId~r~K~I~YYDSLgg~n~~~~~~li~~yLak~l~ 229 (249)
..||.+|+|||+++++|++|+|+||||.+ .||+|+|||+++++|.|||||++.+. ...+.+.+||.....
T Consensus 85 --------~~~~~~v~~w~~~~~l~~~~~i~iPin~~-~HW~l~vi~~~~~~i~~~DSl~~~~~-~~~~~l~~~l~~e~~ 154 (226)
T 1th0_A 85 --------SGGYQAVKRWTKGVNLFEQEIILVPIHRK-VHWSLVVIDLRKKCLKYLDSMGQKGH-RICEILLQYLQDESK 154 (226)
T ss_dssp --------HHTGGGTGGGGTTCCGGGSSEEEEEEEET-TEEEEEEEETTTTEEEEECTTCCCCH-HHHHHHHHHHHHHHH
T ss_pred --------hcccHHHHHHhhcCCcccCCEEEEeEEeC-cEEEEEEEEcCCCceEEEcCCCCCch-HHHHHHHHHHHHHHH
Confidence 24799999999999999999999999996 99999999999999999999999875 455666677766543
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.61 E-value=3.8e-16 Score=130.00 Aligned_cols=98 Identities=15% Similarity=0.296 Sum_probs=68.5
Q ss_pred hhccCcccchhhhhhcccCccccccceeeeecCCCCCCchhhHHHhhhhhhcCCCccccceecccccccccccccccccc
Q 036268 92 SFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDSLVFEDHLNNYLCGRQHTMSK 171 (249)
Q Consensus 92 ~~f~~~~r~~~v~q~Lq~~~k~~~kr~~lT~~d~~~~~p~wv~~~F~nq~~~~g~c~~~~l~~~d~l~GY~~VkRWTkkV 171 (249)
+|+||+. |+++++.|++......++ + .+ +.++. ++.++....+ ..+|..++||++..
T Consensus 3 ~WLND~i-I~fy~~~L~~~~~~~~~~------~---~v-~f~~p-~~~~~l~~~~-----------~~~~~~~~~~~~~~ 59 (186)
T 2oix_A 3 SWLLDGH-LRAYTDDLARRLRGEPNA------H---LL-HFADS-QVVTMLSSAD-----------PDQQARAQRLLAGD 59 (186)
T ss_dssp CCCCHHH-HHHHHHHHHHHTTTSTTG------G---GE-EECCH-HHHHHTTCSS-----------HHHHHHHHHHHHST
T ss_pred CCcChHH-HHHHHHHHHHHhhhccCc------c---eE-EEECH-HHHHHHHhCC-----------HHHHHHHHHHcccc
Confidence 4899999 999999998764221110 0 00 11111 1112222221 13577888888877
Q ss_pred CceeecEEEEeeeCCCCeEEEEEEEcCCCeE---EEEeCCCCCCch
Q 036268 172 SMTDVDMLLIPVNLDGAHWVVARVDFRKNKV---WIYDSLLTFCDD 214 (249)
Q Consensus 172 DIFskDlILIPInv~n~HW~LaVId~r~K~I---~YYDSLgg~n~~ 214 (249)
++ +|+||||||.+++||+|+|||.++++| .||||||+.+..
T Consensus 60 ~~--~~~i~iPin~~~~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~ 103 (186)
T 2oix_A 60 DI--PPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQKDPQ 103 (186)
T ss_dssp TS--CSEEEEEEEETTTEEEEEEEECSSTTSCEEEEECCCSSCCHH
T ss_pred cc--cCEEEEEEeCCCCccEEEEEECCCCeeeeeEEEcCCCCCCHH
Confidence 76 999999999977999999999999999 999999996543
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=24.60 E-value=1.1e+02 Score=26.95 Aligned_cols=29 Identities=14% Similarity=0.362 Sum_probs=25.1
Q ss_pred CCCCeEEEEEEEcCCCeEEEEeCCCCCCc
Q 036268 185 LDGAHWVVARVDFRKNKVWIYDSLLTFCD 213 (249)
Q Consensus 185 v~n~HW~LaVId~r~K~I~YYDSLgg~n~ 213 (249)
.+++||.--+-|.+.+++..+|.+|=+++
T Consensus 50 tGGvHWiA~Aw~P~s~~~YmFDPfG~sd~ 78 (204)
T 4ekf_A 50 TGGVHWMAFAWNPRSKTCYLFEPFGFSDQ 78 (204)
T ss_dssp --CCCEEEEEEETTTTEEEEECTBTTCSH
T ss_pred cCceeEEEeEecCCcceEEEeCCCCCCHH
Confidence 45799999999999999999999998754
No 8
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=22.92 E-value=2.3e+02 Score=20.92 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=28.1
Q ss_pred cCceeecEEEEeeeCCCCeEEEEEEEcCCCeEEEEeC
Q 036268 171 KSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDS 207 (249)
Q Consensus 171 VDIFskDlILIPInv~n~HW~LaVId~r~K~I~YYDS 207 (249)
-.+...|++.+|...+ ..|.+++||.-.+.+..|--
T Consensus 11 ~~~~~~D~~~~~~~~g-~~yl~~~iD~~Sr~i~~~~~ 46 (162)
T 1cxq_A 11 LQIWQTDFTLEPRMAP-RSWLAVTVDTASSAIVVTQH 46 (162)
T ss_dssp CCEEEEEEEECGGGTT-SCEEEEEEETTTCCEEEEEE
T ss_pred CCEEEeeeeecccCCC-CEEEEEEEEcCCCeEEEEEC
Confidence 3456788888887654 78999999999998887743
No 9
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=15.72 E-value=3.7e+02 Score=21.58 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=28.6
Q ss_pred ccCceeecEEEEeeeCCCCeEEEEEEEcCCCeEEEEe
Q 036268 170 SKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYD 206 (249)
Q Consensus 170 kVDIFskDlILIPInv~n~HW~LaVId~r~K~I~YYD 206 (249)
.-.+...|+..+|...+ ..|++++||.-.+.+..|-
T Consensus 9 P~~~w~~D~~~~~~~~g-~~yl~~~iD~~Sr~i~~~~ 44 (238)
T 1c0m_A 9 PLQIWQTDFTLEPRMAP-RSWLAVTVDTASSAIVVTQ 44 (238)
T ss_dssp TTSEEEEEEEECGGGCS-SCEEEEEEETTTCCEEEEE
T ss_pred CCCEEEEeeccccccCC-CEEEEEEEECCCCCEEEEE
Confidence 34567788888887554 7899999999999888774
No 10
>2kfp_A Pspto_3016 protein; alpha, beta, double-WING, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas syringae} PDB: 3h9x_A
Probab=15.71 E-value=1.3e+02 Score=23.21 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=19.6
Q ss_pred eeeeeeehhhccCcccchhhhhhcccCcccc--ccceeeeecC
Q 036268 84 RINFAEVYSFFNDESRIGDVLQTLEPNSKES--SKKYWLTVKD 124 (249)
Q Consensus 84 ~~n~~~~~~~f~~~~r~~~v~q~Lq~~~k~~--~kr~~lT~~d 124 (249)
.+|++| +|.......+. .+.-.+- +|+||+|+..
T Consensus 61 ~vnlK~------~Pe~~~~Lr~~-~~i~PayhmnK~hWisv~L 96 (125)
T 2kfp_A 61 VIDLKV------QPELVGSLRKK-PGIYPAYHMNKEHWITVLL 96 (125)
T ss_dssp EEEEEC------CTTTHHHHHHS-TTEEECSSSCSSSEEEEET
T ss_pred EEEEec------CHHHHHHHHhC-CCCCccccCCCCCeEEEEc
Confidence 489998 66544333332 2221111 8999999963
Done!