BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036269
(623 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 25 ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDI 73
+L+D I+ ++LT ++L FN+I ++ +LQ LF N + D+
Sbjct: 294 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDV 342
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 25 ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDI 73
+L+D I+ ++LT ++L FN+I ++ +LQ LF N + D+
Sbjct: 293 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDV 341
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 25 ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDI 73
+L+D I+ ++LT ++L FN+I ++ +LQ LF N + D+
Sbjct: 297 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDV 345
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 25 ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDI 73
+L+D I+ ++LT ++L FN+I ++ +LQ LF N + D+
Sbjct: 294 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 342
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 25 ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDI 73
+L+D I+ ++LT ++L FN+I ++ +LQ LF N + D+
Sbjct: 294 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 342
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 25 ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDI 73
+L+D I+ ++LT ++L FN+I ++ +LQ LF N + D+
Sbjct: 293 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 341
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 25 ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDI 73
+L+D I+ ++LT ++L FN+I ++ +LQ LF N + D+
Sbjct: 298 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 346
>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 795
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 210 LGALSRLTSLH-IDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRC 268
+G + +L+ ++ + E ++ S S+TI PE+VP +S + K
Sbjct: 175 VGTAYEVAALYQTEMTKPETQSNETSESATNELSVTIDNPEKVPY------YSARVVKNV 228
Query: 269 SRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIV 309
S I P W++ L+++ I + +V D+ N V
Sbjct: 229 S----------IEPSPIWVQARLIKAGIRPINNVVDISNYV 259
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 800
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 210 LGALSRLTSLH-IDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRC 268
+G + +L+ ++ + E ++ S S+TI PE+VP +S + K
Sbjct: 179 VGTAYEVAALYQTEMTKPETQSNETSESATNELSVTIDNPEKVPY------YSARVVKNV 232
Query: 269 SRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIV 309
S I P W++ L+++ I + +V D+ N V
Sbjct: 233 S----------IEPSPIWVQARLIKAGIRPINNVVDISNYV 263
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 35 FEDLTGISLMFNDIHEVHEGLQCP--RLQALFLQKNDLLDIPDPFFQGMKDLKV 86
+ L + L+ N I ++HE P +LQ L++ KN L++IP + +L++
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRI 130
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 24 VELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCP--RLQALFLQKNDLLDIPDPFFQGM 81
E+KD ++L + L+ N I ++ G P +L+ L+L KN L ++P+ + +
Sbjct: 65 TEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL 123
Query: 82 KDLKV 86
++L+V
Sbjct: 124 QELRV 128
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 24 VELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCP--RLQALFLQKNDLLDIPDPFFQGM 81
E+KD ++L + L+ N I ++ G P +L+ L+L KN L ++P+ + +
Sbjct: 65 TEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL 123
Query: 82 KDLKV 86
++L+V
Sbjct: 124 QELRV 128
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 149 SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKF- 207
+F L L L+L D + L +IP G L KL EL W N +S + F
Sbjct: 118 AFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLREL--------WLRNNPIESIPSYAFN 168
Query: 208 -------IELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDF--IE 258
++LG L +L + EG ++ + NL +I P PL +E
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLF---NLKYLNLGMCNIK-DMPNLTPLVGLEELE 224
Query: 259 VFSRKFKK-RCSRAMGLSQDMRISALPSWIKNLLLRSE---ILALGDVNDLENIVSDLAH 314
+ F + R GLS ++ + S + L+ R+ + +L ++N N +S L H
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPH 283
Query: 315 DGFNELMFL 323
D F L +L
Sbjct: 284 DLFTPLRYL 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,294,033
Number of Sequences: 62578
Number of extensions: 568888
Number of successful extensions: 1589
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1535
Number of HSP's gapped (non-prelim): 65
length of query: 623
length of database: 14,973,337
effective HSP length: 105
effective length of query: 518
effective length of database: 8,402,647
effective search space: 4352571146
effective search space used: 4352571146
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)