Query 036269
Match_columns 623
No_of_seqs 251 out of 3146
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 11:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7.2E-38 1.6E-42 357.7 28.7 516 24-618 55-582 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.6E-37 7.9E-42 351.9 26.9 489 32-597 89-589 (968)
3 PLN03210 Resistant to P. syrin 100.0 5.2E-29 1.1E-33 284.4 23.1 386 72-593 548-944 (1153)
4 KOG0472 Leucine-rich repeat pr 99.9 4.2E-30 9.1E-35 238.9 -9.0 465 36-553 45-539 (565)
5 KOG4194 Membrane glycoprotein 99.9 2E-27 4.3E-32 231.2 6.6 387 36-493 52-447 (873)
6 KOG0472 Leucine-rich repeat pr 99.9 1.2E-28 2.5E-33 229.3 -13.7 264 56-385 43-308 (565)
7 KOG4194 Membrane glycoprotein 99.9 7.1E-26 1.5E-30 220.4 4.0 345 36-416 78-431 (873)
8 KOG0618 Serine/threonine phosp 99.9 1E-25 2.2E-30 230.9 2.2 470 40-620 2-489 (1081)
9 PLN03210 Resistant to P. syrin 99.9 4.3E-23 9.2E-28 236.1 23.4 319 59-449 590-909 (1153)
10 KOG0444 Cytoskeletal regulator 99.9 3.7E-26 8E-31 224.0 -2.1 359 32-468 28-394 (1255)
11 KOG0444 Cytoskeletal regulator 99.9 1.1E-25 2.4E-30 220.7 -3.4 369 106-560 5-380 (1255)
12 KOG0618 Serine/threonine phosp 99.9 2.1E-24 4.5E-29 221.4 -6.0 445 36-554 21-488 (1081)
13 KOG4658 Apoptotic ATPase [Sign 99.8 9.7E-21 2.1E-25 205.5 13.8 138 1-141 483-628 (889)
14 KOG0617 Ras suppressor protein 99.7 5.9E-19 1.3E-23 145.8 -3.6 160 25-191 22-185 (264)
15 KOG0617 Ras suppressor protein 99.6 2.7E-18 5.8E-23 141.9 -4.7 166 48-232 23-191 (264)
16 PRK15387 E3 ubiquitin-protein 99.6 6.4E-14 1.4E-18 149.4 17.4 255 38-389 203-459 (788)
17 PRK15387 E3 ubiquitin-protein 99.6 5.4E-14 1.2E-18 150.0 16.6 258 58-414 201-458 (788)
18 KOG4237 Extracellular matrix p 99.5 2.2E-15 4.7E-20 141.3 3.0 267 23-303 55-357 (498)
19 KOG4237 Extracellular matrix p 99.5 5.8E-16 1.3E-20 145.0 -1.0 148 40-191 50-200 (498)
20 PRK15370 E3 ubiquitin-protein 99.5 3.7E-14 8E-19 152.2 11.7 179 36-247 178-357 (754)
21 PRK15370 E3 ubiquitin-protein 99.5 4.3E-13 9.3E-18 144.1 15.3 192 24-249 188-380 (754)
22 KOG4341 F-box protein containi 99.5 2.8E-16 6.1E-21 148.4 -10.3 300 293-621 139-440 (483)
23 KOG4658 Apoptotic ATPase [Sign 99.4 3.1E-13 6.7E-18 147.5 6.9 137 47-189 512-652 (889)
24 KOG4341 F-box protein containi 99.3 3E-14 6.6E-19 134.8 -5.8 180 285-476 183-362 (483)
25 cd00116 LRR_RI Leucine-rich re 99.3 9.6E-13 2.1E-17 131.3 3.2 160 57-226 22-205 (319)
26 cd00116 LRR_RI Leucine-rich re 99.3 1.7E-12 3.6E-17 129.6 2.0 57 63-119 3-62 (319)
27 PF14580 LRR_9: Leucine-rich r 99.2 1.8E-11 3.9E-16 106.9 5.6 124 32-161 15-147 (175)
28 KOG0532 Leucine-rich repeat (L 99.1 8.2E-12 1.8E-16 123.0 -0.9 191 21-232 57-252 (722)
29 PF14580 LRR_9: Leucine-rich r 99.0 2E-10 4.3E-15 100.4 5.1 107 79-191 16-125 (175)
30 KOG1259 Nischarin, modulator o 99.0 1E-10 2.2E-15 106.3 0.8 133 81-230 283-415 (490)
31 KOG1259 Nischarin, modulator o 98.9 1.1E-10 2.5E-15 106.0 -0.3 126 58-191 284-411 (490)
32 KOG0532 Leucine-rich repeat (L 98.9 6.5E-11 1.4E-15 116.8 -2.3 189 41-250 55-248 (722)
33 COG4886 Leucine-rich repeat (L 98.9 1.6E-09 3.4E-14 111.3 6.0 190 40-248 97-289 (394)
34 COG4886 Leucine-rich repeat (L 98.9 2.8E-09 6E-14 109.5 6.2 185 27-231 107-294 (394)
35 KOG3207 Beta-tubulin folding c 98.9 4.6E-10 1E-14 107.5 0.3 153 35-191 120-283 (505)
36 KOG3207 Beta-tubulin folding c 98.8 1E-09 2.3E-14 105.1 0.3 192 49-252 111-317 (505)
37 KOG1909 Ran GTPase-activating 98.5 7E-08 1.5E-12 90.3 3.1 87 33-122 27-133 (382)
38 KOG2120 SCF ubiquitin ligase, 98.5 4.8E-09 1E-13 95.6 -4.5 65 372-445 311-375 (419)
39 KOG2120 SCF ubiquitin ligase, 98.5 7.1E-09 1.5E-13 94.5 -3.4 173 60-246 187-373 (419)
40 PF13855 LRR_8: Leucine rich r 98.5 8E-08 1.7E-12 68.8 2.6 59 58-119 1-60 (61)
41 PF13855 LRR_8: Leucine rich r 98.4 1.8E-07 4E-12 66.9 3.0 59 36-94 1-61 (61)
42 KOG1909 Ran GTPase-activating 98.4 8.9E-08 1.9E-12 89.6 0.8 185 56-248 90-310 (382)
43 PLN03150 hypothetical protein; 98.3 1.5E-06 3.2E-11 93.7 9.3 106 83-191 419-527 (623)
44 KOG1947 Leucine rich repeat pr 98.3 3.3E-08 7.2E-13 104.8 -3.6 119 292-414 188-309 (482)
45 KOG0531 Protein phosphatase 1, 98.3 6.2E-08 1.3E-12 99.6 -1.5 102 56-163 93-195 (414)
46 PLN03150 hypothetical protein; 98.3 1.4E-06 3.1E-11 93.9 8.8 104 109-225 419-526 (623)
47 KOG0531 Protein phosphatase 1, 98.3 9.4E-08 2E-12 98.3 -1.2 175 32-229 91-270 (414)
48 KOG1947 Leucine rich repeat pr 98.3 6.8E-08 1.5E-12 102.5 -2.9 144 316-470 186-331 (482)
49 KOG1859 Leucine-rich repeat pr 98.3 1.6E-08 3.6E-13 102.9 -7.1 178 31-228 104-293 (1096)
50 PRK15386 type III secretion pr 98.2 3.6E-06 7.9E-11 83.0 7.9 136 373-553 51-188 (426)
51 KOG2982 Uncharacterized conser 98.1 4.5E-07 9.7E-12 83.0 0.0 65 289-358 196-260 (418)
52 KOG3665 ZYG-1-like serine/thre 98.1 1.8E-06 3.9E-11 92.7 3.7 138 81-226 121-262 (699)
53 KOG3665 ZYG-1-like serine/thre 98.1 1.2E-06 2.6E-11 94.0 2.1 131 58-191 122-262 (699)
54 PRK15386 type III secretion pr 98.0 1.3E-05 2.8E-10 79.2 7.0 137 396-617 48-187 (426)
55 PF12799 LRR_4: Leucine Rich r 98.0 9.1E-06 2E-10 53.0 4.0 34 83-119 2-35 (44)
56 KOG1644 U2-associated snRNP A' 97.9 2E-05 4.3E-10 68.4 5.8 100 58-163 42-149 (233)
57 PF12799 LRR_4: Leucine Rich r 97.8 2.8E-05 6.1E-10 50.7 4.0 32 132-163 2-33 (44)
58 KOG1859 Leucine-rich repeat pr 97.8 3.4E-07 7.3E-12 93.7 -7.8 123 35-164 163-289 (1096)
59 KOG1644 U2-associated snRNP A' 97.7 7.2E-05 1.6E-09 65.1 5.6 105 36-142 42-151 (233)
60 KOG2982 Uncharacterized conser 97.7 2.5E-05 5.3E-10 71.9 2.7 179 56-249 69-262 (418)
61 KOG4579 Leucine-rich repeat (L 97.7 6.7E-06 1.5E-10 66.6 -0.8 106 38-147 29-139 (177)
62 KOG4579 Leucine-rich repeat (L 97.6 8.1E-06 1.8E-10 66.1 -1.0 111 58-173 27-141 (177)
63 COG5238 RNA1 Ran GTPase-activa 97.4 0.00015 3.3E-09 66.0 4.4 183 33-226 27-254 (388)
64 KOG2123 Uncharacterized conser 97.3 9.9E-06 2.1E-10 73.7 -4.4 81 36-119 19-99 (388)
65 KOG2739 Leucine-rich acidic nu 97.3 8.9E-05 1.9E-09 67.5 1.1 82 56-142 41-127 (260)
66 COG5238 RNA1 Ran GTPase-activa 97.1 0.001 2.2E-08 60.8 5.4 87 104-191 26-132 (388)
67 KOG2739 Leucine-rich acidic nu 96.9 0.00048 1E-08 62.8 2.5 85 33-119 40-127 (260)
68 KOG2123 Uncharacterized conser 96.9 5.9E-05 1.3E-09 68.8 -3.5 77 58-141 19-98 (388)
69 PF13306 LRR_5: Leucine rich r 96.6 0.006 1.3E-07 51.2 6.5 78 56-140 10-90 (129)
70 KOG3864 Uncharacterized conser 96.4 0.0005 1.1E-08 60.1 -1.5 71 513-595 122-192 (221)
71 KOG3864 Uncharacterized conser 96.1 0.00087 1.9E-08 58.6 -1.3 71 342-414 120-190 (221)
72 PF00560 LRR_1: Leucine Rich R 95.6 0.0054 1.2E-07 33.1 0.9 21 132-152 1-21 (22)
73 PF13306 LRR_5: Leucine rich r 95.6 0.037 8.1E-07 46.4 6.5 106 73-188 3-112 (129)
74 PF00560 LRR_1: Leucine Rich R 94.0 0.028 6.1E-07 30.2 1.0 20 83-105 1-20 (22)
75 KOG0473 Leucine-rich repeat pr 93.7 0.0023 5.1E-08 57.1 -5.6 87 29-119 35-122 (326)
76 PF13504 LRR_7: Leucine rich r 93.6 0.045 9.8E-07 27.2 1.3 16 132-147 2-17 (17)
77 smart00367 LRR_CC Leucine-rich 90.7 0.16 3.4E-06 28.6 1.4 16 606-621 1-16 (26)
78 smart00370 LRR Leucine-rich re 88.4 0.5 1.1E-05 26.5 2.3 19 59-77 3-21 (26)
79 smart00369 LRR_TYP Leucine-ric 88.4 0.5 1.1E-05 26.5 2.3 19 59-77 3-21 (26)
80 smart00367 LRR_CC Leucine-rich 87.8 0.25 5.5E-06 27.8 0.8 17 542-558 2-18 (26)
81 smart00370 LRR Leucine-rich re 87.0 0.51 1.1E-05 26.4 1.8 18 131-148 2-19 (26)
82 smart00369 LRR_TYP Leucine-ric 87.0 0.51 1.1E-05 26.4 1.8 18 131-148 2-19 (26)
83 KOG0473 Leucine-rich repeat pr 83.1 0.052 1.1E-06 48.8 -5.2 80 57-163 41-120 (326)
84 smart00364 LRR_BAC Leucine-ric 72.0 2.7 5.8E-05 23.6 1.3 18 131-148 2-19 (26)
85 PF13516 LRR_6: Leucine Rich r 69.2 1.7 3.6E-05 23.8 0.1 13 82-94 2-14 (24)
86 smart00365 LRR_SD22 Leucine-ri 66.3 5.4 0.00012 22.4 1.8 16 131-146 2-17 (26)
87 KOG4308 LRR-containing protein 58.9 0.29 6.4E-06 50.8 -7.5 181 38-228 89-304 (478)
88 KOG4308 LRR-containing protein 55.5 0.14 3E-06 53.2 -10.5 182 60-250 89-304 (478)
89 smart00368 LRR_RI Leucine rich 49.8 14 0.0003 21.1 1.7 14 131-144 2-15 (28)
90 KOG3763 mRNA export factor TAP 33.4 32 0.0007 35.9 2.5 77 56-137 216-307 (585)
91 KOG3763 mRNA export factor TAP 23.6 40 0.00086 35.3 1.2 65 292-356 244-310 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.2e-38 Score=357.69 Aligned_cols=516 Identities=20% Similarity=0.224 Sum_probs=331.5
Q ss_pred CCCCCCCCCCC--CCCCcEEEcccCCccc-ccccC-CCCCcceEEccCCCCC-CCChhhHhCCCcccEEEccCCcccccC
Q 036269 24 VELKDWPSINT--FEDLTGISLMFNDIHE-VHEGL-QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVFSLF 98 (623)
Q Consensus 24 ~~~~~~~~~~~--~~~l~~L~l~~~~~~~-l~~~~-~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~~ 98 (623)
.....|.++.. ..+++.|+++++.+.. ++..+ .+++|+.|++++|.+. .+|..++..+++||+|++++|.+. +
T Consensus 55 ~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~--~ 132 (968)
T PLN00113 55 ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT--G 132 (968)
T ss_pred CCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc--c
Confidence 44566766643 4579999999998764 34444 8899999999999988 889888889999999999999986 5
Q ss_pred CCchhhhccccCcEEeccCCcCCC-Cc-ccccCCcCCcEEEcCCCCCc-cccccccCCCccCEEeccCCCCCCcCchhhh
Q 036269 99 SLPSSLSFLINLRTLSLHDCQHFG-DL-SLIGELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLELIPRGVL 175 (623)
Q Consensus 99 ~lp~~~~~l~~L~~L~l~~~~~l~-~i-~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~ 175 (623)
.+|. ..+++|++|++++|. +. .+ ..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. +
T Consensus 133 ~~p~--~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l 208 (968)
T PLN00113 133 SIPR--GSIPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-L 208 (968)
T ss_pred ccCc--cccCCCCEEECcCCc-ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-H
Confidence 6664 468899999999998 64 34 56889999999999999876 77888999999999999997766677776 8
Q ss_pred hccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCc-cCCCc-ccccCccEEEEEeCCCCCCCc
Q 036269 176 SRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE-IMPSD-MSFQNLTSFSITIGGPEEVPL 253 (623)
Q Consensus 176 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~~~~L~~L~l~~~~~~~~~~ 253 (623)
+++++|++|++++|.+. ...+..++++++|+.|++++|.+. .+|.. ..+++|+.|+++.+......+
T Consensus 209 ~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLS-----------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred cCcCCccEEECcCCccC-----------CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence 89999999999988773 456677888889999999888754 45554 778888888888776433222
Q ss_pred chhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCcee
Q 036269 254 SDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKY 333 (623)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 333 (623)
..+. ..+.++.+++..+...+.+|.++..+ ++|+.|++.+|......+..+ ..+++|+.|++++|.-...
T Consensus 278 ~~l~-------~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 278 PSIF-------SLQKLISLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred hhHh-------hccCcCEEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCc
Confidence 1221 34567777777766555677776655 788888887776544333333 4577888888888732222
Q ss_pred ecccccccccccccccceeecccCcccccccccccCC--CcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccc
Q 036269 334 LLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPA--GCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCE 411 (623)
Q Consensus 334 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 411 (623)
++. ....+++|+.|+++++. +. +.+|. ..+++|+.|++++| .+.+..|.. +..+++|+.|++++ +
T Consensus 348 ~p~-----~l~~~~~L~~L~Ls~n~-l~----~~~p~~~~~~~~L~~L~l~~n-~l~~~~p~~-~~~~~~L~~L~L~~-n 414 (968)
T PLN00113 348 IPK-----NLGKHNNLTVLDLSTNN-LT----GEIPEGLCSSGNLFKLILFSN-SLEGEIPKS-LGACRSLRRVRLQD-N 414 (968)
T ss_pred CCh-----HHhCCCCCcEEECCCCe-eE----eeCChhHhCcCCCCEEECcCC-EecccCCHH-HhCCCCCCEEECcC-C
Confidence 222 34456778888887775 22 22221 23566777777764 344445544 56677777777777 3
Q ss_pred cceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhh
Q 036269 412 LLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMV 491 (623)
Q Consensus 412 ~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~ 491 (623)
.++... +..+..+++|+.|++++|.-...+ +.....+++|+.|++++|.-. ..+|..+ ...+|+.|+
T Consensus 415 ~l~~~~--------p~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L~~n~~~-~~~p~~~-~~~~L~~L~ 481 (968)
T PLN00113 415 SFSGEL--------PSEFTKLPLVYFLDISNNNLQGRI---NSRKWDMPSLQMLSLARNKFF-GGLPDSF-GSKRLENLD 481 (968)
T ss_pred EeeeEC--------ChhHhcCCCCCEEECcCCcccCcc---ChhhccCCCCcEEECcCceee-eecCccc-ccccceEEE
Confidence 343322 444556666666766666322222 222334566666666665332 2223332 235566666
Q ss_pred hhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCC
Q 036269 492 LYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGA 571 (623)
Q Consensus 492 ~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~ 571 (623)
+.+|.. .+..|..+..+++|+.|++++|.-...+|. .+.++++|++|++++|.-...++.
T Consensus 482 ls~n~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----------- 541 (968)
T PLN00113 482 LSRNQF-------SGAVPRKLGSLSELMQLKLSENKLSGEIPD--ELSSCKKLVSLDLSHNQLSGQIPA----------- 541 (968)
T ss_pred CcCCcc-------CCccChhhhhhhccCEEECcCCcceeeCCh--HHcCccCCCEEECCCCcccccCCh-----------
Confidence 665532 334455555566666666666432223322 245566666666666652222211
Q ss_pred CcceeecCcccceecccCcccceecCCCCcceeecCCccEEEeccCC
Q 036269 572 STEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCP 618 (623)
Q Consensus 572 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~ 618 (623)
....+++|+.|++++|.....++. ... .+++|+.+++++|+
T Consensus 542 --~~~~l~~L~~L~Ls~N~l~~~~p~-~l~---~l~~L~~l~ls~N~ 582 (968)
T PLN00113 542 --SFSEMPVLSQLDLSQNQLSGEIPK-NLG---NVESLVQVNISHNH 582 (968)
T ss_pred --hHhCcccCCEEECCCCcccccCCh-hHh---cCcccCEEeccCCc
Confidence 233455566666665554444433 221 24556666665554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.6e-37 Score=351.91 Aligned_cols=489 Identities=19% Similarity=0.216 Sum_probs=382.6
Q ss_pred CCCCCCCcEEEcccCCcc-cccccC--CCCCcceEEccCCCCC-CCChhhHhCCCcccEEEccCCcccccCCCchhhhcc
Q 036269 32 INTFEDLTGISLMFNDIH-EVHEGL--QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFL 107 (623)
Q Consensus 32 ~~~~~~l~~L~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l 107 (623)
...++.|+.|++++|.+. .+|... .+++|++|++++|.+. .+|. ..+++|++|++++|.+. +.+|..+.++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~--~~~p~~~~~l 163 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLS--GEIPNDIGSF 163 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCccc--ccCChHHhcC
Confidence 356789999999999986 677654 7899999999999987 5554 56899999999999996 6889999999
Q ss_pred ccCcEEeccCCcCCC-Cc-ccccCCcCCcEEEcCCCCCc-cccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEE
Q 036269 108 INLRTLSLHDCQHFG-DL-SLIGELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEEL 184 (623)
Q Consensus 108 ~~L~~L~l~~~~~l~-~i-~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L 184 (623)
++|++|++++|. +. .+ ..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|
T Consensus 164 ~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L 241 (968)
T PLN00113 164 SSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHL 241 (968)
T ss_pred CCCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEE
Confidence 999999999998 63 44 67899999999999999887 78999999999999999997766678876 8999999999
Q ss_pred EecccccccccccccccccccccccccCCCCccEEEeecCCCc-cCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhh
Q 036269 185 YMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE-IMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSR 262 (623)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 262 (623)
++++|.+. ...+..++++++|+.|++++|.+. .+|.. ..+++|+.|+++++......+..+.
T Consensus 242 ~L~~n~l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~----- 305 (968)
T PLN00113 242 DLVYNNLT-----------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI----- 305 (968)
T ss_pred ECcCceec-----------cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc-----
Confidence 99999873 456778899999999999999864 45555 7789999999988764433222121
Q ss_pred cccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCce-eeccccccc
Q 036269 263 KFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMK-YLLNSLERT 341 (623)
Q Consensus 263 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~ 341 (623)
..+.++.+.+..+...+..|.++..+ ++|+.|++++|......+..+ ..+++|+.|++++| .+. .++.
T Consensus 306 --~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n-~l~~~~p~----- 374 (968)
T PLN00113 306 --QLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTN-NLTGEIPE----- 374 (968)
T ss_pred --CCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCC-eeEeeCCh-----
Confidence 45678889988877766778877766 899999999887544444333 56789999999999 343 2222
Q ss_pred ccccccccceeecccCcccccccccccC--CCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeec
Q 036269 342 LRVTLLKLEWLMIVDNRNFVEICHGQLP--AGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEI 419 (623)
Q Consensus 342 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~ 419 (623)
....+++|+.|++.++. + .+.+| .+.+++|+.|++.+| .+++..|.. +..+++|+.|++++ +.++...
T Consensus 375 ~~~~~~~L~~L~l~~n~-l----~~~~p~~~~~~~~L~~L~L~~n-~l~~~~p~~-~~~l~~L~~L~Ls~-N~l~~~~-- 444 (968)
T PLN00113 375 GLCSSGNLFKLILFSNS-L----EGEIPKSLGACRSLRRVRLQDN-SFSGELPSE-FTKLPLVYFLDISN-NNLQGRI-- 444 (968)
T ss_pred hHhCcCCCCEEECcCCE-e----cccCCHHHhCCCCCCEEECcCC-EeeeECChh-HhcCCCCCEEECcC-CcccCcc--
Confidence 34456789999999887 2 22333 246899999999996 455556665 78999999999999 6666543
Q ss_pred cceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhhcccccc
Q 036269 420 ERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQ 499 (623)
Q Consensus 420 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~ 499 (623)
+.....+++|+.|++++|.-...+ +. ....++|+.|++++| .+....|..+..+++|++|++.+|.
T Consensus 445 ------~~~~~~l~~L~~L~L~~n~~~~~~---p~-~~~~~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~--- 510 (968)
T PLN00113 445 ------NSRKWDMPSLQMLSLARNKFFGGL---PD-SFGSKRLENLDLSRN-QFSGAVPRKLGSLSELMQLKLSENK--- 510 (968)
T ss_pred ------ChhhccCCCCcEEECcCceeeeec---Cc-ccccccceEEECcCC-ccCCccChhhhhhhccCEEECcCCc---
Confidence 445567899999999999655444 22 223688999999995 5666668888899999999999883
Q ss_pred cceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecC
Q 036269 500 IHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFP 579 (623)
Q Consensus 500 l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~ 579 (623)
+.+..|..+..+++|+.|++++|.-...+ | ..+..+++|++|++++|.-...+|. ....++
T Consensus 511 ----l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p-~~~~~l~~L~~L~Ls~N~l~~~~p~-------------~l~~l~ 571 (968)
T PLN00113 511 ----LSGEIPDELSSCKKLVSLDLSHNQLSGQI-P-ASFSEMPVLSQLDLSQNQLSGEIPK-------------NLGNVE 571 (968)
T ss_pred ----ceeeCChHHcCccCCCEEECCCCcccccC-C-hhHhCcccCCEEECCCCcccccCCh-------------hHhcCc
Confidence 35667888889999999999996544444 3 2478899999999999984445543 456788
Q ss_pred cccceecccCcccceecC
Q 036269 580 SLFSIQLCLLDSLTCFCS 597 (623)
Q Consensus 580 ~L~~L~l~~c~~l~~~~~ 597 (623)
+|+.|++++|+-...++.
T Consensus 572 ~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 572 SLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ccCEEeccCCcceeeCCC
Confidence 999999999987766665
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=5.2e-29 Score=284.42 Aligned_cols=386 Identities=21% Similarity=0.268 Sum_probs=239.0
Q ss_pred CCChhhHhCCCcccEEEccCCcccc----cCCCchhhhccc-cCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccc
Q 036269 72 DIPDPFFQGMKDLKVLDLGGSGVFS----LFSLPSSLSFLI-NLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEI 146 (623)
Q Consensus 72 ~l~~~~~~~l~~Lr~L~l~~~~~~~----~~~lp~~~~~l~-~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~l 146 (623)
++....|.++++|++|.+..+.... ...+|..+..++ +|+.|++.+++ ++.++..-...+|++|+++++.+..+
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCcccccc
Confidence 4556668899999999887653210 024666666654 69999999988 77774434678999999999999999
Q ss_pred cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCC-
Q 036269 147 PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPE- 225 (623)
Q Consensus 147 p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~- 225 (623)
|.++..+++|+.|+++++..++.+|. +..+++|+.|++.+|... ...+..++.+++|+.|++++|.
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L-----------~~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL-----------VELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc-----------cccchhhhccCCCCEEeCCCCCC
Confidence 98899999999999998888888885 788899999999887542 3556677888888888887754
Q ss_pred CccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCc
Q 036269 226 GEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDL 305 (623)
Q Consensus 226 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 305 (623)
+..+|....+ ++|+.|++++|..+
T Consensus 694 L~~Lp~~i~l--------------------------------------------------------~sL~~L~Lsgc~~L 717 (1153)
T PLN03210 694 LEILPTGINL--------------------------------------------------------KSLYRLNLSGCSRL 717 (1153)
T ss_pred cCccCCcCCC--------------------------------------------------------CCCCEEeCCCCCCc
Confidence 3333332223 34555555555443
Q ss_pred ccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCccccccccccc-----CCCcCCCccEEE
Q 036269 306 ENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQL-----PAGCLSNVKRLD 380 (623)
Q Consensus 306 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~~~~~~~L~~L~ 380 (623)
...+ . ...+|+.|+++++ .++.++.. ..+++|+.|.+.++.... ++.... .....++|+.|+
T Consensus 718 ~~~p-~----~~~nL~~L~L~~n-~i~~lP~~------~~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 718 KSFP-D----ISTNISWLDLDET-AIEEFPSN------LRLENLDELILCEMKSEK-LWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred cccc-c----ccCCcCeeecCCC-cccccccc------ccccccccccccccchhh-ccccccccchhhhhccccchhee
Confidence 3321 1 1356777777777 45554432 236777777777654211 000000 011234566666
Q ss_pred EeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccC
Q 036269 381 VRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLH 460 (623)
Q Consensus 381 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~ 460 (623)
+++|+.+.. +|.. +.++++|+.|++++|+.++.+ |... .+++|+.|++++|..++.++. ..+
T Consensus 785 Ls~n~~l~~-lP~s-i~~L~~L~~L~Ls~C~~L~~L---------P~~~-~L~sL~~L~Ls~c~~L~~~p~------~~~ 846 (1153)
T PLN03210 785 LSDIPSLVE-LPSS-IQNLHKLEHLEIENCINLETL---------PTGI-NLESLESLDLSGCSRLRTFPD------IST 846 (1153)
T ss_pred CCCCCCccc-cChh-hhCCCCCCEEECCCCCCcCee---------CCCC-CccccCEEECCCCCccccccc------ccc
Confidence 665554443 4443 455566666666666555554 2222 355566666665555544311 124
Q ss_pred CccEEEEEcCCCcceeccCcccCcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhc
Q 036269 461 DLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKS 540 (623)
Q Consensus 461 ~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 540 (623)
+|++|++.+ +.++ ..|.++..+++|+.|++++|++++.++.. ...
T Consensus 847 nL~~L~Ls~-n~i~--------------------------------~iP~si~~l~~L~~L~L~~C~~L~~l~~~--~~~ 891 (1153)
T PLN03210 847 NISDLNLSR-TGIE--------------------------------EVPWWIEKFSNLSFLDMNGCNNLQRVSLN--ISK 891 (1153)
T ss_pred ccCEeECCC-CCCc--------------------------------cChHHHhcCCCCCEEECCCCCCcCccCcc--ccc
Confidence 455555554 2332 23556678899999999999999998654 678
Q ss_pred cCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceecccCcccc
Q 036269 541 LVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDSLT 593 (623)
Q Consensus 541 l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 593 (623)
+++|+.+++++|++++.++.............+....+|+...+...+|.+|.
T Consensus 892 L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 892 LKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred ccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 89999999999998886643211000000000112245555566667776654
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=4.2e-30 Score=238.88 Aligned_cols=465 Identities=21% Similarity=0.295 Sum_probs=327.1
Q ss_pred CCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEe
Q 036269 36 EDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS 114 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~ 114 (623)
..+..+.+++|.++.+.+.. .+..+.+|++.+|....+|+++ .++..+..++.++|.+ ..+|..++....|+.|+
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~l---s~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKL---SELPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchH---hhccHHHhhhhhhhhhh
Confidence 45788999999998887766 8889999999999999999986 8999999999999999 89999999999999999
Q ss_pred ccCCcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccc
Q 036269 115 LHDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHW 193 (623)
Q Consensus 115 l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 193 (623)
++++. +..+ +.++.+..|..++..+|+++++|.+++.+.+|..+++.+ +.++.+|++.+. ++.|++++...|..
T Consensus 121 ~s~n~-~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~L-- 195 (565)
T KOG0472|consen 121 CSSNE-LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNLL-- 195 (565)
T ss_pred ccccc-eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchhhh--
Confidence 99998 7666 889999999999999999999999999999999999999 678888887455 99999999988877
Q ss_pred ccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcc-ccccccee
Q 036269 194 QFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKF-KKRCSRAM 272 (623)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l 272 (623)
+.+|.+++.+.+|..|++..|.+..+|...++..|.++++..+.....+. +.+ ..+.+..+
T Consensus 196 ----------~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpa--------e~~~~L~~l~vL 257 (565)
T KOG0472|consen 196 ----------ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPA--------EHLKHLNSLLVL 257 (565)
T ss_pred ----------hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHH--------HHhcccccceee
Confidence 67899999999999999999999999977888899999888776443332 122 45677777
Q ss_pred eeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccc-cccccccccce
Q 036269 273 GLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLER-TLRVTLLKLEW 351 (623)
Q Consensus 273 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~~L~~ 351 (623)
++..+. +..+|+.+.-+ ++|+.|+++++.. +..+..+ +.+ +|+.|.+.|++ ++.+-.+... +....++.|+.
T Consensus 258 DLRdNk-lke~Pde~clL-rsL~rLDlSNN~i-s~Lp~sL--gnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 258 DLRDNK-LKEVPDEICLL-RSLERLDLSNNDI-SSLPYSL--GNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRS 330 (565)
T ss_pred eccccc-cccCchHHHHh-hhhhhhcccCCcc-ccCCccc--ccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHH
Confidence 777654 45788888766 8899999988763 4444444 556 89999999985 2221111000 01111112221
Q ss_pred ee----cccCcccccc----cccccCC-CcCCCccEEEEeecCCcccccchhHHHhcc--ccceEEEeccccceeeeecc
Q 036269 352 LM----IVDNRNFVEI----CHGQLPA-GCLSNVKRLDVRDCGSVLKILPSHLVQSFQ--NLQRLRVEGCELLVSVFEIE 420 (623)
Q Consensus 352 L~----l~~~~~l~~~----~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~--~L~~L~l~~c~~l~~i~~~~ 420 (623)
=. ++.-..-+.- ....+|. ..+.+.+.|++++ ..++. +|...+..-. -....++++ +++.+++..=
T Consensus 331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~-VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L 407 (565)
T KOG0472|consen 331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTL-VPDEVFEAAKSEIVTSVNFSK-NQLCELPKRL 407 (565)
T ss_pred hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-ccccc-CCHHHHHHhhhcceEEEeccc-chHhhhhhhh
Confidence 00 0000000000 0001111 1345567777776 66665 5655322211 245556666 5555441000
Q ss_pred ---------------ceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcc
Q 036269 421 ---------------RVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKA 485 (623)
Q Consensus 421 ---------------~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~ 485 (623)
-...++..+..+++|..|+++++ -+-++ |...+.+..|+.|+|+. +.+..+ |..+-...
T Consensus 408 ~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~L---P~e~~~lv~Lq~LnlS~-NrFr~l-P~~~y~lq 481 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDL---PEEMGSLVRLQTLNLSF-NRFRML-PECLYELQ 481 (565)
T ss_pred HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhc---chhhhhhhhhheecccc-cccccc-hHHHhhHH
Confidence 00111445567778888888777 35555 55556677788888877 565554 55555555
Q ss_pred cchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCC
Q 036269 486 AAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCP 553 (623)
Q Consensus 486 ~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 553 (623)
.+|.+.+.+++ +....+.++..+.+|..|++.+ +.+..+||. ++++++|++|.++|+|
T Consensus 482 ~lEtllas~nq-------i~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~--LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 482 TLETLLASNNQ-------IGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPI--LGNMTNLRHLELDGNP 539 (565)
T ss_pred HHHHHHhcccc-------ccccChHHhhhhhhcceeccCC-CchhhCChh--hccccceeEEEecCCc
Confidence 66666666553 3444566788889999999988 788888876 8899999999999988
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2e-27 Score=231.15 Aligned_cols=387 Identities=19% Similarity=0.205 Sum_probs=251.0
Q ss_pred CCCcEEEcccCCcccccccC----CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCc
Q 036269 36 EDLTGISLMFNDIHEVHEGL----QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLR 111 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~ 111 (623)
-..+.++.+++.+..+.... -.+..++|++++|.+.++...+|.++++|+.+++..|.+ +.+|.......+|+
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L---t~IP~f~~~sghl~ 128 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL---TRIPRFGHESGHLE 128 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchh---hhccccccccccee
Confidence 44567888888887653221 224567899999999988888899999999999999999 88998777778899
Q ss_pred EEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecc
Q 036269 112 TLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK 188 (623)
Q Consensus 112 ~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~ 188 (623)
.|++.+|. +.++ +.+..++.||.|||+.|.|+.+| ..+.+-.++++|++++ +.++.+..+.+..+.+|-+|.++.
T Consensus 129 ~L~L~~N~-I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 129 KLDLRHNL-ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred EEeeeccc-cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeeccc
Confidence 99999998 8888 78899999999999999999887 4677778999999999 778888877789999999999999
Q ss_pred cccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhcccc
Q 036269 189 TFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKK 266 (623)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 266 (623)
|.++ ..-+..+.++++|+.|++..|.++.+... .++++|+.+.+..++.....+
T Consensus 207 Nrit-----------tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D------------- 262 (873)
T KOG4194|consen 207 NRIT-----------TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD------------- 262 (873)
T ss_pred Cccc-----------ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC-------------
Confidence 9883 22344566799999999999887655333 667777777776665332221
Q ss_pred cccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccc
Q 036269 267 RCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTL 346 (623)
Q Consensus 267 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 346 (623)
+.+.-+.++++|+++.+... .+...+. .++..|+.|+++.+ .+..+..+ .....
T Consensus 263 -------------------G~Fy~l~kme~l~L~~N~l~-~vn~g~l-fgLt~L~~L~lS~N-aI~rih~d----~Wsft 316 (873)
T KOG4194|consen 263 -------------------GAFYGLEKMEHLNLETNRLQ-AVNEGWL-FGLTSLEQLDLSYN-AIQRIHID----SWSFT 316 (873)
T ss_pred -------------------cceeeecccceeecccchhh-hhhcccc-cccchhhhhccchh-hhheeecc----hhhhc
Confidence 11111256666666655421 1111111 34566666666666 34433222 33445
Q ss_pred cccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccc
Q 036269 347 LKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAK 426 (623)
Q Consensus 347 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~ 426 (623)
++|++|+++++. ++.+..+.+ ..+..|++|.++. +.++. +....+..+++|+.|++++ +.+.-.++. + .
T Consensus 317 qkL~~LdLs~N~-i~~l~~~sf--~~L~~Le~LnLs~-Nsi~~-l~e~af~~lssL~~LdLr~-N~ls~~IED-a----a 385 (873)
T KOG4194|consen 317 QKLKELDLSSNR-ITRLDEGSF--RVLSQLEELNLSH-NSIDH-LAEGAFVGLSSLHKLDLRS-NELSWCIED-A----A 385 (873)
T ss_pred ccceeEeccccc-cccCChhHH--HHHHHhhhhcccc-cchHH-HHhhHHHHhhhhhhhcCcC-CeEEEEEec-c----h
Confidence 566666666654 333211111 2345566666665 44443 4444455566666666666 555433222 1 2
Q ss_pred cccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhh
Q 036269 427 EETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLY 493 (623)
Q Consensus 427 ~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~ 493 (623)
..+..+++|+.|++.++ +++.|.+.. +..+++|++|++.+ +-+.++=|..+..+ .|++|.+.
T Consensus 386 ~~f~gl~~LrkL~l~gN-qlk~I~krA--fsgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTGN-QLKSIPKRA--FSGLEALEHLDLGD-NAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhhccchhhhheeecCc-eeeecchhh--hccCcccceecCCC-Ccceeecccccccc-hhhhhhhc
Confidence 23334666666666666 555553332 23456666666665 45555544444444 55555443
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=1.2e-28 Score=229.32 Aligned_cols=264 Identities=24% Similarity=0.315 Sum_probs=195.2
Q ss_pred CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-ccccCCcCCc
Q 036269 56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLE 134 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~ 134 (623)
.-..++.+++++|.+..+...+ .++..|.+|++++|.. .++|++++.+..++.++.+.+. +..+ +.++.+..|+
T Consensus 43 ~qv~l~~lils~N~l~~l~~dl-~nL~~l~vl~~~~n~l---~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEVLREDL-KNLACLTVLNVHDNKL---SQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLV 117 (565)
T ss_pred hhcchhhhhhccCchhhccHhh-hcccceeEEEeccchh---hhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhh
Confidence 3356889999999999777765 8999999999999999 7999999999999999999999 7666 8899999999
Q ss_pred EEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCC
Q 036269 135 ILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALS 214 (623)
Q Consensus 135 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 214 (623)
.++.+.|.+.++|++++.+..|..++..+ +.+..+|.+ +..+.++..+++.+|++ .+.+...-.|+
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~-~~~~~~l~~l~~~~n~l------------~~l~~~~i~m~ 183 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDLDATN-NQISSLPED-MVNLSKLSKLDLEGNKL------------KALPENHIAMK 183 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhhhccc-cccccCchH-HHHHHHHHHhhccccch------------hhCCHHHHHHH
Confidence 99999999999999999999999999888 778889988 88999999999999987 35555555599
Q ss_pred CccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhh
Q 036269 215 RLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLR 293 (623)
Q Consensus 215 ~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~ 293 (623)
.|++++...|.++.+|+. +.+.+|.-|++..++....| .+|.+ ..
T Consensus 184 ~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-----------------------------ef~gc-----s~ 229 (565)
T KOG0472|consen 184 RLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-----------------------------EFPGC-----SL 229 (565)
T ss_pred HHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-----------------------------CCCcc-----HH
Confidence 999999999999999988 88899999998888765444 11111 34
Q ss_pred ceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCcccccccccccCCCcC
Q 036269 294 SEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCL 373 (623)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 373 (623)
|++++++.+. +.. ++.--...++++..|++..+ ++++++++ ...+.+|+.|+++++. ++.+. ...+.+
T Consensus 230 L~Elh~g~N~-i~~-lpae~~~~L~~l~vLDLRdN-klke~Pde-----~clLrsL~rLDlSNN~-is~Lp---~sLgnl 297 (565)
T KOG0472|consen 230 LKELHVGENQ-IEM-LPAEHLKHLNSLLVLDLRDN-KLKEVPDE-----ICLLRSLERLDLSNND-ISSLP---YSLGNL 297 (565)
T ss_pred HHHHHhcccH-HHh-hHHHHhcccccceeeecccc-ccccCchH-----HHHhhhhhhhcccCCc-cccCC---cccccc
Confidence 4444444333 111 11111134566666666666 56666552 3345566666666654 22110 112344
Q ss_pred CCccEEEEeecC
Q 036269 374 SNVKRLDVRDCG 385 (623)
Q Consensus 374 ~~L~~L~l~~c~ 385 (623)
.|+.|.+.++|
T Consensus 298 -hL~~L~leGNP 308 (565)
T KOG0472|consen 298 -HLKFLALEGNP 308 (565)
T ss_pred -eeeehhhcCCc
Confidence 56666666544
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=7.1e-26 Score=220.40 Aligned_cols=345 Identities=17% Similarity=0.218 Sum_probs=215.1
Q ss_pred CCCcEEEcccCCccccccc--CCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEE
Q 036269 36 EDLTGISLMFNDIHEVHEG--LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL 113 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L 113 (623)
+..+.|+++.|.+.++-.. .++++|+.+.+..|.++.+|... ....+|+.|+|.+|.+. .--..++.-++.||+|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~-~~sghl~~L~L~~N~I~--sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFG-HESGHLEKLDLRHNLIS--SVTSEELSALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccc-ccccceeEEeeeccccc--cccHHHHHhHhhhhhh
Confidence 5677899999998776544 28899999999999999888732 44566999999999884 2233557788899999
Q ss_pred eccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccc
Q 036269 114 SLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTF 190 (623)
Q Consensus 114 ~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~ 190 (623)
|++.|. +..+ +.+..-.++++|+|++|.|+.+. ..|..+.+|-.|.++. +.++.+|..++.++++|+.|++..|.
T Consensus 155 DLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 155 DLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccc
Confidence 999998 8777 56777788999999999998664 4677888999999998 77888998878889999999998887
Q ss_pred cccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccc
Q 036269 191 CHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRC 268 (623)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (623)
+. ...-..++.+++|+.|.+..|++..+.+. ..+.+++++++..+.......+.+- ....
T Consensus 233 ir-----------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-------gLt~ 294 (873)
T KOG4194|consen 233 IR-----------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-------GLTS 294 (873)
T ss_pred ee-----------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc-------ccch
Confidence 73 12234577888888888888888777776 6778888888887764332211111 2233
Q ss_pred cceeeeccccccc-cchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccccccccc
Q 036269 269 SRAMGLSQDMRIS-ALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLL 347 (623)
Q Consensus 269 l~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 347 (623)
++.++++.+..-. ....|-+ .++|++|+++++.... ++.-.+..+..|++|.++++ ++..+.+. ....+.
T Consensus 295 L~~L~lS~NaI~rih~d~Wsf--tqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~N-si~~l~e~----af~~ls 365 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSF--TQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHN-SIDHLAEG----AFVGLS 365 (873)
T ss_pred hhhhccchhhhheeecchhhh--cccceeEecccccccc--CChhHHHHHHHhhhhccccc-chHHHHhh----HHHHhh
Confidence 3333333322110 1222221 1455555555444211 11111123445555555555 34433322 333455
Q ss_pred ccceeecccCcccccc-cccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceee
Q 036269 348 KLEWLMIVDNRNFVEI-CHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSV 416 (623)
Q Consensus 348 ~L~~L~l~~~~~l~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i 416 (623)
+|++|+++++. +... -.+..+...++.|++|.+.+ ++++. +|...+.++++|++|++.+ +.|.++
T Consensus 366 sL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~-I~krAfsgl~~LE~LdL~~-NaiaSI 431 (873)
T KOG4194|consen 366 SLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTG-NQLKS-IPKRAFSGLEALEHLDLGD-NAIASI 431 (873)
T ss_pred hhhhhcCcCCe-EEEEEecchhhhccchhhhheeecC-ceeee-cchhhhccCcccceecCCC-Ccceee
Confidence 55555555544 1111 11112222355555555555 45544 4444455555555555555 555544
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1e-25 Score=230.94 Aligned_cols=470 Identities=21% Similarity=0.241 Sum_probs=291.4
Q ss_pred EEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269 40 GISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC 118 (623)
Q Consensus 40 ~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~ 118 (623)
+++++.+.++.||..+ .-..++.|++..|.+...|-.+..+.-+|+.|++++|.+ ..+|..+..+++|+.|.++.|
T Consensus 2 ~vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~---~~fp~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI---SSFPIQITLLSHLRQLNLSRN 78 (1081)
T ss_pred CcccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeecccccc---ccCCchhhhHHHHhhcccchh
Confidence 4677888888888877 445589999999998876666667777799999999999 889999999999999999999
Q ss_pred cCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccccc
Q 036269 119 QHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFEN 197 (623)
Q Consensus 119 ~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~ 197 (623)
. ++.+ ...+++.+|++|+|.+|.++.+|.++..+.+|++|++++ +....+|.- +..+..++.+.+++|..
T Consensus 79 ~-i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~-N~f~~~Pl~-i~~lt~~~~~~~s~N~~------ 149 (1081)
T KOG0618|consen 79 Y-IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF-NHFGPIPLV-IEVLTAEEELAASNNEK------ 149 (1081)
T ss_pred h-HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch-hccCCCchh-HHhhhHHHHHhhhcchh------
Confidence 8 8766 678899999999999999999999999999999999999 566678875 78888888888888721
Q ss_pred ccccccccccccccCCCCccEEEeecCCC-ccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeec
Q 036269 198 EDDSRSNAKFIELGALSRLTSLHIDIPEG-EIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLS 275 (623)
Q Consensus 198 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 275 (623)
...++... ++.+++..+.+ ..++.+ ..+.. .+++.++... .+++
T Consensus 150 ---------~~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---------------------~~dl- 195 (1081)
T KOG0618|consen 150 ---------IQRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---------------------VLDL- 195 (1081)
T ss_pred ---------hhhhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---------------------hhhh-
Confidence 11222222 55555554442 222222 22222 2444333211 0000
Q ss_pred cccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecc
Q 036269 276 QDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIV 355 (623)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 355 (623)
..+++|+.+....+.. .. +. ..-++++.|+.+.|+-.+.. ......+|+.++++
T Consensus 196 -------------s~~~~l~~l~c~rn~l-s~----l~-~~g~~l~~L~a~~n~l~~~~-------~~p~p~nl~~~dis 249 (1081)
T KOG0618|consen 196 -------------SNLANLEVLHCERNQL-SE----LE-ISGPSLTALYADHNPLTTLD-------VHPVPLNLQYLDIS 249 (1081)
T ss_pred -------------hhccchhhhhhhhccc-ce----EE-ecCcchheeeeccCcceeec-------cccccccceeeecc
Confidence 0012333333222111 00 00 12245666666665322111 11112345556655
Q ss_pred cCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCc
Q 036269 356 DNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSL 435 (623)
Q Consensus 356 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L 435 (623)
.+. ++.+. .+ .+.+++|+.+.+.. +.+.. +|.. +....+|++|.+.. +.++++ +.....+.+|
T Consensus 250 ~n~-l~~lp-~w--i~~~~nle~l~~n~-N~l~~-lp~r-i~~~~~L~~l~~~~-nel~yi---------p~~le~~~sL 312 (1081)
T KOG0618|consen 250 HNN-LSNLP-EW--IGACANLEALNANH-NRLVA-LPLR-ISRITSLVSLSAAY-NELEYI---------PPFLEGLKSL 312 (1081)
T ss_pred hhh-hhcch-HH--HHhcccceEecccc-hhHHh-hHHH-HhhhhhHHHHHhhh-hhhhhC---------CCccccccee
Confidence 543 22211 11 12455666666655 34433 4444 45556666666666 555555 4444446666
Q ss_pred cEEecCCccchhhcccCCCcccccC-CccEEEEEcCCCcceeccCcccCcccchhhhhhcccccccceeccccCCCCCCC
Q 036269 436 EKLTLIGLPRMTDIWKGDTQFVSLH-DLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPS 514 (623)
Q Consensus 436 ~~L~l~~c~~l~~i~~~~~~~~~l~-~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~ 514 (623)
++|++..+ +|.++++.. +.... +|..|..+. .++...+-..-.....|+.|++.+| .+.+..-+.+..
T Consensus 313 ~tLdL~~N-~L~~lp~~~--l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN-------~Ltd~c~p~l~~ 381 (1081)
T KOG0618|consen 313 RTLDLQSN-NLPSLPDNF--LAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANN-------HLTDSCFPVLVN 381 (1081)
T ss_pred eeeeehhc-cccccchHH--HhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcC-------cccccchhhhcc
Confidence 66666666 455442211 11111 134444432 4444443222233667778888776 334444456789
Q ss_pred CCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhc-------------CCCCcccCcCCCcceeecCcc
Q 036269 515 LGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIM-------------NDEGEVGLQGASTEKITFPSL 581 (623)
Q Consensus 515 l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~-------------~~~~~~~~~~~~~~~~~l~~L 581 (623)
+.+||.|++++ ++|.++ |...+.++..||+|+++|+. ++.++. ..+.+..+| ....++.|
T Consensus 382 ~~hLKVLhLsy-NrL~~f-pas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fP----e~~~l~qL 454 (1081)
T KOG0618|consen 382 FKHLKVLHLSY-NRLNSF-PASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFP----ELAQLPQL 454 (1081)
T ss_pred ccceeeeeecc-cccccC-CHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeech----hhhhcCcc
Confidence 99999999999 788886 55678999999999999987 666653 222333443 45667788
Q ss_pred cceecccCcccceecCCCCcceeecCCccEEEeccCCCC
Q 036269 582 FSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCPGM 620 (623)
Q Consensus 582 ~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l 620 (623)
+.++++ |.+|+.+-. .. ...+|.||+|+++|.+.+
T Consensus 455 ~~lDlS-~N~L~~~~l-~~--~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 455 KVLDLS-CNNLSEVTL-PE--ALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred eEEecc-cchhhhhhh-hh--hCCCcccceeeccCCccc
Confidence 888886 567776644 22 223589999999998754
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.3e-23 Score=236.11 Aligned_cols=319 Identities=24% Similarity=0.353 Sum_probs=198.1
Q ss_pred CcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEc
Q 036269 59 RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDL 138 (623)
Q Consensus 59 ~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l 138 (623)
+||.|.+.++.+..+|..+ ...+|++|++.++.+ ..+|..+..+++|++|+++++..++.++.++.+++|++|++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l---~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKL---EKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC--CccCCcEEECcCccc---cccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEe
Confidence 4666666666666666543 456666666666666 55666666666666666666654555555666666666666
Q ss_pred CCC-CCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCcc
Q 036269 139 SES-DVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLT 217 (623)
Q Consensus 139 ~~~-~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 217 (623)
++| .+..+|..++++++|+.|++++|+.++.+|.. + ++++|+.|++++|... ...+. ...+|+
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L-----------~~~p~---~~~nL~ 728 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRL-----------KSFPD---ISTNIS 728 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCc-----------ccccc---ccCCcC
Confidence 665 34466666666666666666666666666653 2 5666666666665431 11111 124566
Q ss_pred EEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeE
Q 036269 218 SLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEIL 297 (623)
Q Consensus 218 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L 297 (623)
.|+++++.+..+|....+++|.+|.+..+...... +....++......+++|+.|
T Consensus 729 ~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~-------------------------~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 729 WLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW-------------------------ERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred eeecCCCccccccccccccccccccccccchhhcc-------------------------ccccccchhhhhccccchhe
Confidence 66666666666655544555665555432211000 00001112222223678888
Q ss_pred eecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCcc
Q 036269 298 ALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVK 377 (623)
Q Consensus 298 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~ 377 (623)
++++|..+..++..+ ..+++|+.|++++|..++.++.. ..+++|+.|++++|..+..+ | ...++|+
T Consensus 784 ~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~------~~L~sL~~L~Ls~c~~L~~~-----p-~~~~nL~ 849 (1153)
T PLN03210 784 FLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTG------INLESLESLDLSGCSRLRTF-----P-DISTNIS 849 (1153)
T ss_pred eCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCC------CCccccCEEECCCCCccccc-----c-ccccccC
Confidence 888887766655444 56788888888888777776642 24778888888888765433 2 1236788
Q ss_pred EEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhc
Q 036269 378 RLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDI 449 (623)
Q Consensus 378 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i 449 (623)
.|++++ +.++. +|.. +..+++|+.|++++|++++.+ +.....+++|+.+++++|++++.+
T Consensus 850 ~L~Ls~-n~i~~-iP~s-i~~l~~L~~L~L~~C~~L~~l---------~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 850 DLNLSR-TGIEE-VPWW-IEKFSNLSFLDMNGCNNLQRV---------SLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred EeECCC-CCCcc-ChHH-HhcCCCCCEEECCCCCCcCcc---------CcccccccCCCeeecCCCcccccc
Confidence 888887 45654 5654 778888888888888888876 445566788888888888888754
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=3.7e-26 Score=223.96 Aligned_cols=359 Identities=19% Similarity=0.301 Sum_probs=283.0
Q ss_pred CCCCCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccC
Q 036269 32 INTFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINL 110 (623)
Q Consensus 32 ~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L 110 (623)
+..+.+++.|.+...++..+|... .+.+|++|.+++|.++.+...+ +.++.||.+++..|++.. ..+|..+.++..|
T Consensus 28 v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGEL-s~Lp~LRsv~~R~N~LKn-sGiP~diF~l~dL 105 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGEL-SDLPRLRSVIVRDNNLKN-SGIPTDIFRLKDL 105 (1255)
T ss_pred HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhh-ccchhhHHHhhhcccccc-CCCCchhcccccc
Confidence 366788999999999999999888 8899999999999998887775 899999999999998854 5689889999999
Q ss_pred cEEeccCCcCCCCc-ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecc
Q 036269 111 RTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK 188 (623)
Q Consensus 111 ~~L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~ 188 (623)
.+||+++|. ++.. ..+.+.+++-+|++++|.|.++|.. +-+++.|-+|++++ +.+..+|+. +.++.+|++|.+++
T Consensus 106 t~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 106 TILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSN 182 (1255)
T ss_pred eeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCC
Confidence 999999999 8776 6788999999999999999999965 45889999999999 788999998 89999999999999
Q ss_pred cccccccccccccccccccccccCCCCccEEEeecCC--CccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhccc
Q 036269 189 TFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPE--GEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFK 265 (623)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 265 (623)
|.+. -.....+..|++|+.|++++.+ +.++|.. ..+.+|..++++.+...
T Consensus 183 NPL~-----------hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp---------------- 235 (1255)
T KOG0444|consen 183 NPLN-----------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP---------------- 235 (1255)
T ss_pred Chhh-----------HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC----------------
Confidence 8762 3455667778888888888875 5677766 67778888887765421
Q ss_pred ccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccccccc
Q 036269 266 KRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVT 345 (623)
Q Consensus 266 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 345 (623)
.+|.++..+ ++|+.|+++++.. +...... ....+|++|+++.+ .++.+++ ....
T Consensus 236 ----------------~vPecly~l-~~LrrLNLS~N~i-teL~~~~--~~W~~lEtLNlSrN-QLt~LP~-----avcK 289 (1255)
T KOG0444|consen 236 ----------------IVPECLYKL-RNLRRLNLSGNKI-TELNMTE--GEWENLETLNLSRN-QLTVLPD-----AVCK 289 (1255)
T ss_pred ----------------cchHHHhhh-hhhheeccCcCce-eeeeccH--HHHhhhhhhccccc-hhccchH-----HHhh
Confidence 667777777 8999999998874 2222222 34578999999999 6777766 5667
Q ss_pred ccccceeecccCcccccccccccCC--CcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeecccee
Q 036269 346 LLKLEWLMIVDNRNFVEICHGQLPA--GCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVN 423 (623)
Q Consensus 346 ~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~ 423 (623)
+++|+.|.+.++. ++ +..+|. |.+..|+.+...+ +.+. .+|.+ +..|..|+.|.++. +.+-++
T Consensus 290 L~kL~kLy~n~Nk-L~---FeGiPSGIGKL~~Levf~aan-N~LE-lVPEg-lcRC~kL~kL~L~~-NrLiTL------- 354 (1255)
T KOG0444|consen 290 LTKLTKLYANNNK-LT---FEGIPSGIGKLIQLEVFHAAN-NKLE-LVPEG-LCRCVKLQKLKLDH-NRLITL------- 354 (1255)
T ss_pred hHHHHHHHhccCc-cc---ccCCccchhhhhhhHHHHhhc-cccc-cCchh-hhhhHHHHHhcccc-cceeec-------
Confidence 8889998888775 33 233443 4778888888887 5665 36766 89999999999988 777776
Q ss_pred ccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEE
Q 036269 424 IAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVV 468 (623)
Q Consensus 424 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~ 468 (623)
|+.++-++-|+.|+++.++++.- +..|. ..-++|+.-.|+
T Consensus 355 --PeaIHlL~~l~vLDlreNpnLVM-PPKP~--da~~~lefYNID 394 (1255)
T KOG0444|consen 355 --PEAIHLLPDLKVLDLRENPNLVM-PPKPN--DARKKLEFYNID 394 (1255)
T ss_pred --hhhhhhcCCcceeeccCCcCccC-CCCcc--hhhhcceeeecc
Confidence 88889999999999999999864 33332 222455555544
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=1.1e-25 Score=220.70 Aligned_cols=369 Identities=18% Similarity=0.247 Sum_probs=258.0
Q ss_pred ccccCcEEeccCCcCCC-C-c-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCc
Q 036269 106 FLINLRTLSLHDCQHFG-D-L-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLE 182 (623)
Q Consensus 106 ~l~~L~~L~l~~~~~l~-~-i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~ 182 (623)
-++..|-.|+++|. ++ + + .....+..++-|.+..+.+..+|++++.+.+|++|.+.. +.+..+-.+ +..++.|+
T Consensus 5 VLpFVrGvDfsgND-Fsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~H-N~L~~vhGE-Ls~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGND-FSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAH-NQLISVHGE-LSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCc-CCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhh-hhhHhhhhh-hccchhhH
Confidence 34556667777777 42 2 2 556677777777777777777777777777777777777 344444444 66677777
Q ss_pred EEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhh
Q 036269 183 ELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFS 261 (623)
Q Consensus 183 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 261 (623)
.+.+..|.+. ...+|..+.++..|..|++++|.+.++|.. ..-+++..|+++++...
T Consensus 82 sv~~R~N~LK----------nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie------------ 139 (1255)
T KOG0444|consen 82 SVIVRDNNLK----------NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE------------ 139 (1255)
T ss_pred HHhhhccccc----------cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc------------
Confidence 7777766652 345677777777777788887777777766 55566666777665433
Q ss_pred hcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccc
Q 036269 262 RKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERT 341 (623)
Q Consensus 262 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 341 (623)
.+|..++.-+..|-.|+++.+. +...+|.+ ..+.+|++|.+++++-...-..
T Consensus 140 --------------------tIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~--RRL~~LqtL~Ls~NPL~hfQLr----- 191 (1255)
T KOG0444|consen 140 --------------------TIPNSLFINLTDLLFLDLSNNR-LEMLPPQI--RRLSMLQTLKLSNNPLNHFQLR----- 191 (1255)
T ss_pred --------------------cCCchHHHhhHhHhhhccccch-hhhcCHHH--HHHhhhhhhhcCCChhhHHHHh-----
Confidence 5555555444667778887765 34445544 4577899999999863221000
Q ss_pred ccccccccceeecccCcccccccccccCC--CcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeec
Q 036269 342 LRVTLLKLEWLMIVDNRNFVEICHGQLPA--GCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEI 419 (623)
Q Consensus 342 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~ 419 (623)
....+.+|++|.+++...- ...+|. ..+.+|+.++++. +.+.. +|.. +..+++|+.|++++ ++|+++
T Consensus 192 QLPsmtsL~vLhms~TqRT----l~N~Ptsld~l~NL~dvDlS~-N~Lp~-vPec-ly~l~~LrrLNLS~-N~iteL--- 260 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRT----LDNIPTSLDDLHNLRDVDLSE-NNLPI-VPEC-LYKLRNLRRLNLSG-NKITEL--- 260 (1255)
T ss_pred cCccchhhhhhhcccccch----hhcCCCchhhhhhhhhccccc-cCCCc-chHH-HhhhhhhheeccCc-Cceeee---
Confidence 2333556777777765532 223443 3678899999986 67764 6776 78889999999999 888887
Q ss_pred cceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCccee-ccCcccCcccchhhhhhccccc
Q 036269 420 ERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQV-FPANLGKKAAAEEMVLYRNRRD 498 (623)
Q Consensus 420 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~-~~~~l~~~~~L~~l~~~~~~~~ 498 (623)
....+..-+|++|+++.+ .++.+ |.....++.|++|++.+ ++++.- +|..++.+.+|+++...+|..
T Consensus 261 ------~~~~~~W~~lEtLNlSrN-QLt~L---P~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~L- 328 (1255)
T KOG0444|consen 261 ------NMTEGEWENLETLNLSRN-QLTVL---PDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNKL- 328 (1255)
T ss_pred ------eccHHHHhhhhhhccccc-hhccc---hHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcccc-
Confidence 334455778999999998 67777 66667788999999887 666533 588888899999988887644
Q ss_pred ccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhc
Q 036269 499 QIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIM 560 (623)
Q Consensus 499 ~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~ 560 (623)
...|+++..++.|+.|+++. +++-.+|. .++-++-|+.|++..+|++.--|.
T Consensus 329 -------ElVPEglcRC~kL~kL~L~~-NrLiTLPe--aIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 329 -------ELVPEGLCRCVKLQKLKLDH-NRLITLPE--AIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred -------ccCchhhhhhHHHHHhcccc-cceeechh--hhhhcCCcceeeccCCcCccCCCC
Confidence 45688888999999999966 67777654 478889999999999998765543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=2.1e-24 Score=221.42 Aligned_cols=445 Identities=20% Similarity=0.221 Sum_probs=266.9
Q ss_pred CCCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEE
Q 036269 36 EDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL 113 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L 113 (623)
..+.+|+++.|.+-..|-.+ +..+|+.|++++|.+...|..+ ..+.+|+.|+++.|.+ ...|.+..++.+|++|
T Consensus 21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~i-t~l~~L~~ln~s~n~i---~~vp~s~~~~~~l~~l 96 (1081)
T KOG0618|consen 21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQI-TLLSHLRQLNLSRNYI---RSVPSSCSNMRNLQYL 96 (1081)
T ss_pred HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchh-hhHHHHhhcccchhhH---hhCchhhhhhhcchhh
Confidence 33677777777654433211 4555888888888877777665 6778888888888877 6777777788888888
Q ss_pred eccCCcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccc
Q 036269 114 SLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCH 192 (623)
Q Consensus 114 ~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 192 (623)
.+.+|. +... ..+..+.+|++|+++.|.+..+|..+..++.+..+..++|..+..++.. . ++++++..+.+.
T Consensus 97 nL~~n~-l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~-----~-ik~~~l~~n~l~ 169 (1081)
T KOG0618|consen 97 NLKNNR-LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT-----S-IKKLDLRLNVLG 169 (1081)
T ss_pred eeccch-hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc-----c-chhhhhhhhhcc
Confidence 888777 6554 5677788888888888888777777777776666666664233333321 1 334444443331
Q ss_pred ccccccccccccccccc-------------------ccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCc
Q 036269 193 WQFENEDDSRSNAKFIE-------------------LGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPL 253 (623)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-------------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 253 (623)
+.++.+ +..+.+|+.++...|.+..+. ..-++|+.+....+.......
T Consensus 170 -----------~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~--~~g~~l~~L~a~~n~l~~~~~ 236 (1081)
T KOG0618|consen 170 -----------GSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELE--ISGPSLTALYADHNPLTTLDV 236 (1081)
T ss_pred -----------cchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEE--ecCcchheeeeccCcceeecc
Confidence 222223 333444444444444332221 122344444444443221110
Q ss_pred chhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCcee
Q 036269 254 SDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKY 333 (623)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 333 (623)
......+..+.+..+.. ..+|.|+... .+|+.++...+.. ...+..+ ....+|+.+.+..| .++.
T Consensus 237 ---------~p~p~nl~~~dis~n~l-~~lp~wi~~~-~nle~l~~n~N~l-~~lp~ri--~~~~~L~~l~~~~n-el~y 301 (1081)
T KOG0618|consen 237 ---------HPVPLNLQYLDISHNNL-SNLPEWIGAC-ANLEALNANHNRL-VALPLRI--SRITSLVSLSAAYN-ELEY 301 (1081)
T ss_pred ---------ccccccceeeecchhhh-hcchHHHHhc-ccceEecccchhH-HhhHHHH--hhhhhHHHHHhhhh-hhhh
Confidence 11223345555554433 2667777766 6777777765553 3333333 33556777777666 5655
Q ss_pred ecccccccccccccccceeecccCcccccccccccCCCcC-CCccEEEEeecCCcccccchhHHHhccccceEEEecccc
Q 036269 334 LLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCL-SNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCEL 412 (623)
Q Consensus 334 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 412 (623)
++. ....+..|++|++..+. +..+....+ ... ..|+.|..+. ..+.. .|...-..++.|+.|++-+ +.
T Consensus 302 ip~-----~le~~~sL~tLdL~~N~-L~~lp~~~l--~v~~~~l~~ln~s~-n~l~~-lp~~~e~~~~~Lq~Lylan-N~ 370 (1081)
T KOG0618|consen 302 IPP-----FLEGLKSLRTLDLQSNN-LPSLPDNFL--AVLNASLNTLNVSS-NKLST-LPSYEENNHAALQELYLAN-NH 370 (1081)
T ss_pred CCC-----cccccceeeeeeehhcc-ccccchHHH--hhhhHHHHHHhhhh-ccccc-cccccchhhHHHHHHHHhc-Cc
Confidence 554 33446677777777654 222111000 011 1244444443 34433 3433345567788888888 77
Q ss_pred ceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhh
Q 036269 413 LVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVL 492 (623)
Q Consensus 413 l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~ 492 (623)
+++-. -+-+..++.|+.|+++.+ .|.+++.. .+.++..|++|+++| ++++.+ |..++.|..|++|..
T Consensus 371 Ltd~c--------~p~l~~~~hLKVLhLsyN-rL~~fpas--~~~kle~LeeL~LSG-NkL~~L-p~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 371 LTDSC--------FPVLVNFKHLKVLHLSYN-RLNSFPAS--KLRKLEELEELNLSG-NKLTTL-PDTVANLGRLHTLRA 437 (1081)
T ss_pred ccccc--------hhhhccccceeeeeeccc-ccccCCHH--HHhchHHhHHHhccc-chhhhh-hHHHHhhhhhHHHhh
Confidence 66531 234567888999999888 56655322 345678888999998 888887 688888889998888
Q ss_pred hcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCc
Q 036269 493 YRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPT 554 (623)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~ 554 (623)
.+|.. .++| .+..++.|+.++++. ++|+.+........ +.||.|+++|++.
T Consensus 438 hsN~l--------~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 438 HSNQL--------LSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred cCCce--------eech-hhhhcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCcc
Confidence 88755 3445 667888899999865 77777644322222 7899999999885
No 13
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.84 E-value=9.7e-21 Score=205.45 Aligned_cols=138 Identities=38% Similarity=0.610 Sum_probs=110.1
Q ss_pred CchhHHHHHHHHhh-----ccceeeecCCCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCC--CCCC
Q 036269 1 MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKND--LLDI 73 (623)
Q Consensus 1 mHdl~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~--~~~l 73 (623)
|||+|||||.++++ +|...+..+.++.+.|.+.....+|++.+.++.+..++....+++|++|.+.+|. +..+
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~i 562 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEI 562 (889)
T ss_pred eeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhc
Confidence 89999999999999 7776677666777788888889999999999999999888888899999999997 5588
Q ss_pred ChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-ccccCCcCCcEEEcCCC
Q 036269 74 PDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLEILDLSES 141 (623)
Q Consensus 74 ~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~ 141 (623)
+..+|..++.||+||+++|.-. ..+|..++.+-+||+|+++++. +..+ ..++++..|.+||+..+
T Consensus 563 s~~ff~~m~~LrVLDLs~~~~l--~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 563 SGEFFRSLPLLRVLDLSGNSSL--SKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred CHHHHhhCcceEEEECCCCCcc--CcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccc
Confidence 8888899999999999987543 7888888888888877777776 4443 34444444444444443
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=5.9e-19 Score=145.79 Aligned_cols=160 Identities=23% Similarity=0.418 Sum_probs=114.8
Q ss_pred CCCCCCCCCCCCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchh
Q 036269 25 ELKDWPSINTFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS 103 (623)
Q Consensus 25 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~ 103 (623)
.+.++|+.-.++.++.|.++.|+++.+|+.+ .+.+|+.|++.+|.+.++|.++ +.+++||.|+++-|.+ ..+|..
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl---~~lprg 97 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRL---NILPRG 97 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhh---hcCccc
Confidence 4566666666777777888888887777777 7777888888888777777775 7778888888877777 677777
Q ss_pred hhccccCcEEeccCCcCCCC--c-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhcccc
Q 036269 104 LSFLINLRTLSLHDCQHFGD--L-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRK 180 (623)
Q Consensus 104 ~~~l~~L~~L~l~~~~~l~~--i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~ 180 (623)
|+.++.|++||+.+|+ +.+ + ..+-.+..|+-|++++|++.-+|..++++++||.|.+++ +.+-.+|.+ ++.+..
T Consensus 98 fgs~p~levldltynn-l~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~ 174 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTR 174 (264)
T ss_pred cCCCchhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHH
Confidence 7777888888877776 522 2 345556667777777777777777777777777777777 444456666 666666
Q ss_pred CcEEEeccccc
Q 036269 181 LEELYMSKTFC 191 (623)
Q Consensus 181 L~~L~l~~~~~ 191 (623)
|++|++.+|.+
T Consensus 175 lrelhiqgnrl 185 (264)
T KOG0617|consen 175 LRELHIQGNRL 185 (264)
T ss_pred HHHHhccccee
Confidence 77666666655
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.7e-18 Score=141.95 Aligned_cols=166 Identities=28% Similarity=0.428 Sum_probs=150.7
Q ss_pred cccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-cc
Q 036269 48 IHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SL 126 (623)
Q Consensus 48 ~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~ 126 (623)
+.+++..+.+.+++.|.+++|.++.+|+.+ +++++|++|++++|++ +.+|..+..+++|+.|++.-|. +..+ ..
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqi---e~lp~~issl~klr~lnvgmnr-l~~lprg 97 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQI---EELPTSISSLPKLRILNVGMNR-LNILPRG 97 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchh---hhcChhhhhchhhhheecchhh-hhcCccc
Confidence 456677778899999999999999888886 9999999999999999 8999999999999999999888 6544 78
Q ss_pred ccCCcCCcEEEcCCCCCc--cccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccc
Q 036269 127 IGELSLLEILDLSESDVS--EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSN 204 (623)
Q Consensus 127 ~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 204 (623)
++.++-|+.||+..|++. .+|..|-.|+.|+.|++++ +....+|.+ ++++++||.|.+..|.+ -
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndl------------l 163 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDL------------L 163 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCch------------h
Confidence 999999999999999987 7899999999999999999 677889988 89999999999999887 4
Q ss_pred cccccccCCCCccEEEeecCCCccCCCc
Q 036269 205 AKFIELGALSRLTSLHIDIPEGEIMPSD 232 (623)
Q Consensus 205 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 232 (623)
..|++++.++.|++|++.+|.+.-+|+.
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 7889999999999999999998888765
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=6.4e-14 Score=149.42 Aligned_cols=255 Identities=18% Similarity=0.155 Sum_probs=143.9
Q ss_pred CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269 38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD 117 (623)
Q Consensus 38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~ 117 (623)
-..|+++.+.++.+|+.+. ++|+.|.+.+|.++.+|. ..++|++|++++|.+ ..+|.. .++|+.|++.+
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~L---tsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQL---TSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCcc---CcccCc---ccccceeeccC
Confidence 3456677777776666542 357777777777766653 246777777777776 455532 35667777777
Q ss_pred CcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccccc
Q 036269 118 CQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFEN 197 (623)
Q Consensus 118 ~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~ 197 (623)
|. +..++. ...+|+.|++++|.++.+|.. .++|+.|++++ +.+..+|.. . ..|+.|++++|.+.
T Consensus 272 N~-L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l-p---~~L~~L~Ls~N~L~----- 335 (788)
T PRK15387 272 NP-LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL-P---SELCKLWAYNNQLT----- 335 (788)
T ss_pred Cc-hhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC-c---ccccccccccCccc-----
Confidence 76 554422 124566777777777766642 35677777777 345555531 1 34556666666552
Q ss_pred ccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccc
Q 036269 198 EDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQD 277 (623)
Q Consensus 198 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 277 (623)
.++. -..+|+.|++++|.+..+|.. ..+|..|+++++....
T Consensus 336 -------~LP~---lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~--------------------------- 376 (788)
T PRK15387 336 -------SLPT---LPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTS--------------------------- 376 (788)
T ss_pred -------cccc---cccccceEecCCCccCCCCCC--Ccccceehhhcccccc---------------------------
Confidence 1221 113577777777776666543 3455555555443221
Q ss_pred cccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccC
Q 036269 278 MRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDN 357 (623)
Q Consensus 278 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 357 (623)
+|.. ..+|+.|++++|.. ..+ +. ..++|+.|++++| .++.++. .+.+|+.|+++++
T Consensus 377 -----LP~l----~~~L~~LdLs~N~L-t~L-P~----l~s~L~~LdLS~N-~LssIP~--------l~~~L~~L~Ls~N 432 (788)
T PRK15387 377 -----LPAL----PSGLKELIVSGNRL-TSL-PV----LPSELKELMVSGN-RLTSLPM--------LPSGLLSLSVYRN 432 (788)
T ss_pred -----Cccc----ccccceEEecCCcc-cCC-CC----cccCCCEEEccCC-cCCCCCc--------chhhhhhhhhccC
Confidence 1111 13566677766542 221 11 1356777777777 4554432 1345677777776
Q ss_pred cccccccccccCC--CcCCCccEEEEeecCCccc
Q 036269 358 RNFVEICHGQLPA--GCLSNVKRLDVRDCGSVLK 389 (623)
Q Consensus 358 ~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~ 389 (623)
. ++. +|. ..+++|+.|+++++ .+++
T Consensus 433 q-Lt~-----LP~sl~~L~~L~~LdLs~N-~Ls~ 459 (788)
T PRK15387 433 Q-LTR-----LPESLIHLSSETTVNLEGN-PLSE 459 (788)
T ss_pred c-ccc-----cChHHhhccCCCeEECCCC-CCCc
Confidence 5 332 222 35677788888774 4544
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=5.4e-14 Score=149.99 Aligned_cols=258 Identities=21% Similarity=0.186 Sum_probs=170.5
Q ss_pred CCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEE
Q 036269 58 PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILD 137 (623)
Q Consensus 58 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~ 137 (623)
..-..|+++++.++.+|+.+. ++|+.|++.+|.+ +.+|. .+++|++|++++|. ++.++. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~L---t~LP~---lp~~Lk~LdLs~N~-LtsLP~--lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNL---TSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh---cCCCEEEccCCcC---CCCCC---CCCCCcEEEecCCc-cCcccC--cccccceee
Confidence 456789999999999998762 5899999999999 67775 35899999999998 877743 247899999
Q ss_pred cCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCcc
Q 036269 138 LSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLT 217 (623)
Q Consensus 138 l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 217 (623)
+++|.+..+|.. .++|+.|++++ +.++.+|.. .++|+.|++++|.+. .++.. ..+|+
T Consensus 269 Ls~N~L~~Lp~l---p~~L~~L~Ls~-N~Lt~LP~~----p~~L~~LdLS~N~L~------------~Lp~l---p~~L~ 325 (788)
T PRK15387 269 IFSNPLTHLPAL---PSGLCKLWIFG-NQLTSLPVL----PPGLQELSVSDNQLA------------SLPAL---PSELC 325 (788)
T ss_pred ccCCchhhhhhc---hhhcCEEECcC-Ccccccccc----ccccceeECCCCccc------------cCCCC---ccccc
Confidence 999999988853 36788999999 567778752 378999999999873 22221 23577
Q ss_pred EEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeE
Q 036269 218 SLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEIL 297 (623)
Q Consensus 218 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L 297 (623)
.|++++|.+..+|.. ..+|+.|++++|.....+ ..| .+|+.|
T Consensus 326 ~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~LP-----------------------------~lp-------~~L~~L 367 (788)
T PRK15387 326 KLWAYNNQLTSLPTL--PSGLQELSVSDNQLASLP-----------------------------TLP-------SELYKL 367 (788)
T ss_pred ccccccCcccccccc--ccccceEecCCCccCCCC-----------------------------CCC-------ccccee
Confidence 888999988777753 346788888776533222 111 456666
Q ss_pred eecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCcc
Q 036269 298 ALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVK 377 (623)
Q Consensus 298 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~ 377 (623)
++.++.. ..+ +. ...+|+.|++++| .++.++. ..++|+.|+++++. ++. +|. ...+|+
T Consensus 368 ~Ls~N~L-~~L-P~----l~~~L~~LdLs~N-~Lt~LP~--------l~s~L~~LdLS~N~-Lss-----IP~-l~~~L~ 425 (788)
T PRK15387 368 WAYNNRL-TSL-PA----LPSGLKELIVSGN-RLTSLPV--------LPSELKELMVSGNR-LTS-----LPM-LPSGLL 425 (788)
T ss_pred hhhcccc-ccC-cc----cccccceEEecCC-cccCCCC--------cccCCCEEEccCCc-CCC-----CCc-chhhhh
Confidence 6665542 222 21 1346777777776 4444332 13456666766665 322 221 123556
Q ss_pred EEEEeecCCcccccchhHHHhccccceEEEeccccce
Q 036269 378 RLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLV 414 (623)
Q Consensus 378 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 414 (623)
.|++++ +.++. +|.. +..+++|+.|++++ +.++
T Consensus 426 ~L~Ls~-NqLt~-LP~s-l~~L~~L~~LdLs~-N~Ls 458 (788)
T PRK15387 426 SLSVYR-NQLTR-LPES-LIHLSSETTVNLEG-NPLS 458 (788)
T ss_pred hhhhcc-Ccccc-cChH-HhhccCCCeEECCC-CCCC
Confidence 666665 34543 4544 55666666666666 4443
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.54 E-value=2.2e-15 Score=141.27 Aligned_cols=267 Identities=20% Similarity=0.194 Sum_probs=153.8
Q ss_pred CCCCCCCCCCCCCCCCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccC-CcccccCC
Q 036269 23 GVELKDWPSINTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGG-SGVFSLFS 99 (623)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~-~~~~~~~~ 99 (623)
+.++..+| -+..+....+++..|+|+.+|+.. .+++||.|+|++|.+..+.+.+|.+++.|-.|.+.+ |.+ +.
T Consensus 55 ~~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI---~~ 130 (498)
T KOG4237|consen 55 GKGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI---TD 130 (498)
T ss_pred CCCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch---hh
Confidence 45666666 234466677888888888888765 778888888888888877777788888887777766 666 66
Q ss_pred Cch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCc------
Q 036269 100 LPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLEL------ 169 (623)
Q Consensus 100 lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~------ 169 (623)
+|+ .|+.+..|+.|.+.-|. +.-+ ..+..+++|+.|.+.+|.+..++. .+..+..++.+.+..+.++..
T Consensus 131 l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 664 46777788877777776 5444 567777777777777777776665 566666666666554332211
Q ss_pred ------CchhhhhccccCcEEEeccccccccccc-------------cccc-ccccc-cccccCCCCccEEEeecCCCcc
Q 036269 170 ------IPRGVLSRLRKLEELYMSKTFCHWQFEN-------------EDDS-RSNAK-FIELGALSRLTSLHIDIPEGEI 228 (623)
Q Consensus 170 ------l~~~~~~~l~~L~~L~l~~~~~~~~~~~-------------~~~~-~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 228 (623)
.|.. .+......-..+....+....++ ..+. ..... ..-++++++|+.|++++|.++.
T Consensus 210 a~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 210 ADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 0100 11111000000000000000000 0000 00001 1125677777777777777766
Q ss_pred CCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccC
Q 036269 229 MPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVN 303 (623)
Q Consensus 229 ~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 303 (623)
+... .....+++|.+..+....+...-|. ....+++++++++....-.|..+... ..|..|.+-.++
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~-------~ls~L~tL~L~~N~it~~~~~aF~~~-~~l~~l~l~~Np 357 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQ-------GLSGLKTLSLYDNQITTVAPGAFQTL-FSLSTLNLLSNP 357 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhh-------ccccceeeeecCCeeEEEeccccccc-ceeeeeehccCc
Confidence 6554 5666777777766654332221111 34466777777766554445444444 567777776554
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.54 E-value=5.8e-16 Score=145.05 Aligned_cols=148 Identities=26% Similarity=0.350 Sum_probs=124.4
Q ss_pred EEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCc
Q 036269 40 GISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ 119 (623)
Q Consensus 40 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 119 (623)
.++-++..++++|..+- +.-..+.|+.|.+..+|+.+|+.+++||.|||+.|.++ ..-|.+|..++.|-.|-+.+++
T Consensus 50 ~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is--~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS--FIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred eEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchh--hcChHhhhhhHhhhHHHhhcCC
Confidence 34555566788887763 34567899999999999999999999999999999996 6678899999999999888855
Q ss_pred CCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 120 HFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 120 ~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
+|+++ ..++++..|+.|.+.-|++..++ +.+..+++|..|.+.+ +.+..++...+..+..++++.+..|.+
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCcc
Confidence 59888 68999999999999999988554 6788999999999999 778888876688899999988877653
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=3.7e-14 Score=152.24 Aligned_cols=179 Identities=19% Similarity=0.294 Sum_probs=113.2
Q ss_pred CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269 36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l 115 (623)
.+.+.|+++++.++.+|..+ .++++.|++++|.+..+|..+ .++|++|++++|.+ ..+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N~L---tsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENL---QGNIKTLYANSNQL---TSIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhh---ccCCCEEECCCCcc---ccCChhhh--ccccEEEC
Confidence 34567788877777777654 246788888888887777654 25788888888877 66776543 46888888
Q ss_pred cCCcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccc
Q 036269 116 HDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQ 194 (623)
Q Consensus 116 ~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~ 194 (623)
++|. +..+ ..+ ..+|++|++++|.++.+|..+. ++|+.|++++ +.++.+|.. +. ..|+.|++++|.+.
T Consensus 249 s~N~-L~~LP~~l--~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt-- 317 (754)
T PRK15370 249 SINR-ITELPERL--PSALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-LP--SGITHLNVQSNSLT-- 317 (754)
T ss_pred cCCc-cCcCChhH--hCCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-ch--hhHHHHHhcCCccc--
Confidence 8877 6665 222 2467888888887777776554 4788888877 355566653 22 35667777776652
Q ss_pred cccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCC
Q 036269 195 FENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGG 247 (623)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 247 (623)
.++..+ .++|+.|++++|.+..+|... .++|+.|++++|.
T Consensus 318 ----------~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~ 357 (754)
T PRK15370 318 ----------ALPETL--PPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQ 357 (754)
T ss_pred ----------cCCccc--cccceeccccCCccccCChhh-cCcccEEECCCCC
Confidence 222222 245666666666655554331 2345555555443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=4.3e-13 Score=144.12 Aligned_cols=192 Identities=19% Similarity=0.309 Sum_probs=149.3
Q ss_pred CCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchh
Q 036269 24 VELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS 103 (623)
Q Consensus 24 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~ 103 (623)
.++..+|. ...+.++.|++++|.++.+|.... .+|+.|++++|.+..+|..+ .+.|+.|++++|.+ ..+|..
T Consensus 188 ~~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L---~~LP~~ 259 (754)
T PRK15370 188 LGLTTIPA-CIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATL---PDTIQEMELSINRI---TELPER 259 (754)
T ss_pred CCcCcCCc-ccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhh---hccccEEECcCCcc---CcCChh
Confidence 45666664 234789999999999999987653 58999999999999998765 35799999999999 788876
Q ss_pred hhccccCcEEeccCCcCCCCcc-cccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCc
Q 036269 104 LSFLINLRTLSLHDCQHFGDLS-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLE 182 (623)
Q Consensus 104 ~~~l~~L~~L~l~~~~~l~~i~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~ 182 (623)
+. .+|++|++++|. +..++ .+ ..+|++|++++|.++.+|..+. ++|+.|++++ +.+..+|.. + .++|+
T Consensus 260 l~--s~L~~L~Ls~N~-L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l--~~sL~ 328 (754)
T PRK15370 260 LP--SALQSLDLFHNK-ISCLPENL--PEELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET-L--PPGLK 328 (754)
T ss_pred Hh--CCCCEEECcCCc-cCcccccc--CCCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc-c--cccce
Confidence 64 589999999988 87663 23 2589999999999999887654 5799999999 566677764 2 36899
Q ss_pred EEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCC
Q 036269 183 ELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPE 249 (623)
Q Consensus 183 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 249 (623)
.|++++|.+. .++..+. ++|+.|++++|.+..+|... .++|+.|++++|...
T Consensus 329 ~L~Ls~N~Lt------------~LP~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 329 TLEAGENALT------------SLPASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRNALT 380 (754)
T ss_pred eccccCCccc------------cCChhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCC
Confidence 9999998773 3343332 68999999999988777542 357888888776543
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.45 E-value=2.8e-16 Score=148.37 Aligned_cols=300 Identities=17% Similarity=0.174 Sum_probs=143.8
Q ss_pred hceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCcccccccccccCCCc
Q 036269 293 RSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGC 372 (623)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 372 (623)
.|+.|.+.+|....+.........+|++++|.+.+|.++++..-. .....+++|++|++..|..+++..-..+ ...
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~---sla~~C~~l~~l~L~~c~~iT~~~Lk~l-a~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLL---SLARYCRKLRHLNLHSCSSITDVSLKYL-AEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHH---HHHHhcchhhhhhhcccchhHHHHHHHH-HHh
Confidence 456666666665544333333345666666666666544432211 1334455666666666655554322111 124
Q ss_pred CCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccC
Q 036269 373 LSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKG 452 (623)
Q Consensus 373 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~ 452 (623)
+++|+.|+++.|+.+++.-......++..++.+-..+|..+..-. + ...-..++-+.++++.+|..+++....
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~----l---~~~~~~~~~i~~lnl~~c~~lTD~~~~ 287 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA----L---LKAAAYCLEILKLNLQHCNQLTDEDLW 287 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH----H---HHHhccChHhhccchhhhccccchHHH
Confidence 566666666666665543222223344445555444554432110 0 000112334444444455444432100
Q ss_pred CCcccccCCccEEEEEcCCCcceeccCccc-CcccchhhhhhcccccccceeccccCCCCC-CCCCCccEEEEecCCCcc
Q 036269 453 DTQFVSLHDLKKIRVVFCDELRQVFPANLG-KKAAAEEMVLYRNRRDQIHIHATTSTSSPT-PSLGNLVSITIRGCGKLR 530 (623)
Q Consensus 453 ~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~-~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~-~~l~~L~~L~i~~c~~l~ 530 (623)
.....+..|+.|+.++|..+++.+...++ ++.+|+.+-+..|+ .+++.-...+ .+.+.|+.+++.+|..+.
T Consensus 288 -~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~------~fsd~~ft~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 288 -LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ------QFSDRGFTMLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred -HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc------hhhhhhhhhhhcCChhhhhhcccccceeh
Confidence 01112444555555555554444333332 24555555554441 1111111111 345667777777766665
Q ss_pred eecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceecccCcccceecCCCCcceeecCCcc
Q 036269 531 NLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALE 610 (623)
Q Consensus 531 ~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~ 610 (623)
+-.-.....+++.|+.|.++.|..+++. |+.++.+ ..-....|..+.+.+||.+++.-. .. ...|+.||
T Consensus 361 d~tL~sls~~C~~lr~lslshce~itD~-----gi~~l~~---~~c~~~~l~~lEL~n~p~i~d~~L-e~--l~~c~~Le 429 (483)
T KOG4341|consen 361 DGTLASLSRNCPRLRVLSLSHCELITDE-----GIRHLSS---SSCSLEGLEVLELDNCPLITDATL-EH--LSICRNLE 429 (483)
T ss_pred hhhHhhhccCCchhccCChhhhhhhhhh-----hhhhhhh---ccccccccceeeecCCCCchHHHH-HH--HhhCcccc
Confidence 5423334556677777777777766554 3333322 223445666777777777665543 22 23466777
Q ss_pred EEEeccCCCCc
Q 036269 611 ALQIIDCPGMK 621 (623)
Q Consensus 611 ~L~i~~c~~l~ 621 (623)
.+++.+|..++
T Consensus 430 ri~l~~~q~vt 440 (483)
T KOG4341|consen 430 RIELIDCQDVT 440 (483)
T ss_pred eeeeechhhhh
Confidence 77777776543
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.40 E-value=3.1e-13 Score=147.48 Aligned_cols=137 Identities=28% Similarity=0.398 Sum_probs=110.5
Q ss_pred CcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCc--ccccCCCchh-hhccccCcEEeccCCcCCCC
Q 036269 47 DIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSG--VFSLFSLPSS-LSFLINLRTLSLHDCQHFGD 123 (623)
Q Consensus 47 ~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~--~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~ 123 (623)
...+.|...+....|...+.+|.+..++.. .++++|++|-+.++. + ..++.. |..++.|++||+++|..+..
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l---~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWL---LEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred CccccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhh---hhcCHHHHhhCcceEEEECCCCCccCc
Confidence 334455555667889999989988877664 477899999999885 5 555554 67899999999999886777
Q ss_pred c-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccc
Q 036269 124 L-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKT 189 (623)
Q Consensus 124 i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~ 189 (623)
+ ..++.+.+||+|+++++.+..+|.+++++..|.+|++..+.....+|. +...+.+|++|.+...
T Consensus 587 LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRS 652 (889)
T ss_pred CChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeecc
Confidence 6 789999999999999999999999999999999999998666666644 4667999999988654
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.32 E-value=3e-14 Score=134.84 Aligned_cols=180 Identities=13% Similarity=0.104 Sum_probs=120.0
Q ss_pred HHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCccccccc
Q 036269 285 SWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEIC 364 (623)
Q Consensus 285 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 364 (623)
..+...++.++++++..|..+++........++++|+.+.+++|+.++.-... .....+..++.+...+|..++.-.
T Consensus 183 ~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~---~~~rG~~~l~~~~~kGC~e~~le~ 259 (483)
T KOG4341|consen 183 LSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQ---ALQRGCKELEKLSLKGCLELELEA 259 (483)
T ss_pred HHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcch---HHhccchhhhhhhhcccccccHHH
Confidence 34555668899999999998888665544467999999999999877651111 133445567778777887554321
Q ss_pred ccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCcc
Q 036269 365 HGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLP 444 (623)
Q Consensus 365 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 444 (623)
.... .+.++-+.++++..|..+++.-.......+..|+.|+.++|..+++... ..--...++|+.+-++.|.
T Consensus 260 l~~~-~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l-------~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 260 LLKA-AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL-------WALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred HHHH-hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH-------HHHhcCCCceEEEeccccc
Confidence 1111 2356667778888888888754444455678899999999988766421 1111356889999999998
Q ss_pred chhhcccCCCcccccCCccEEEEEcCCCccee
Q 036269 445 RMTDIWKGDTQFVSLHDLKKIRVVFCDELRQV 476 (623)
Q Consensus 445 ~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~ 476 (623)
.+++.... .....++.|+.+++.+|...++.
T Consensus 332 ~fsd~~ft-~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 332 QFSDRGFT-MLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred hhhhhhhh-hhhcCChhhhhhcccccceehhh
Confidence 88765222 12245778888888888665543
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.30 E-value=9.6e-13 Score=131.33 Aligned_cols=160 Identities=24% Similarity=0.137 Sum_probs=68.2
Q ss_pred CCCcceEEccCCCCC-----CCChhhHhCCCcccEEEccCCcccc----cCCCchhhhccccCcEEeccCCcCCCC-c-c
Q 036269 57 CPRLQALFLQKNDLL-----DIPDPFFQGMKDLKVLDLGGSGVFS----LFSLPSSLSFLINLRTLSLHDCQHFGD-L-S 125 (623)
Q Consensus 57 ~~~L~~L~l~~~~~~-----~l~~~~~~~l~~Lr~L~l~~~~~~~----~~~lp~~~~~l~~L~~L~l~~~~~l~~-i-~ 125 (623)
++.|+.|+++++.+. .++. .+...+.+++++++++.+.. ...++..+..+++|+.|++++|. +.. . .
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~ 99 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-LGPDGCG 99 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC-CChhHHH
Confidence 344555555555543 1211 12344455555555544410 00122234445555555555555 321 1 2
Q ss_pred cccCC---cCCcEEEcCCCCCc-----cccccccCC-CccCEEeccCCCCCC----cCchhhhhccccCcEEEecccccc
Q 036269 126 LIGEL---SLLEILDLSESDVS-----EIPVSFGRL-GHLRLLDLTDCYNLE----LIPRGVLSRLRKLEELYMSKTFCH 192 (623)
Q Consensus 126 ~~~~l---~~L~~L~l~~~~i~-----~lp~~i~~l-~~L~~L~l~~~~~~~----~l~~~~~~~l~~L~~L~l~~~~~~ 192 (623)
.+..+ ++|++|++++|.+. .+...+..+ ++|+.|++++|.... .++. .+..+++|++|++++|.+.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCCc
Confidence 22222 23555555555544 122233444 555666665543321 1111 1334455666666555542
Q ss_pred cccccccccccccccccccCCCCccEEEeecCCC
Q 036269 193 WQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG 226 (623)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 226 (623)
... ....+..+...++|+.|++++|.+
T Consensus 179 ~~~-------~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 179 DAG-------IRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred hHH-------HHHHHHHHHhCCCCCEEeccCCcc
Confidence 100 011222334445666666665543
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.25 E-value=1.7e-12 Score=129.60 Aligned_cols=57 Identities=25% Similarity=0.197 Sum_probs=30.5
Q ss_pred EEccCCCCC-CCChhhHhCCCcccEEEccCCccccc--CCCchhhhccccCcEEeccCCc
Q 036269 63 LFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVFSL--FSLPSSLSFLINLRTLSLHDCQ 119 (623)
Q Consensus 63 L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~--~~lp~~~~~l~~L~~L~l~~~~ 119 (623)
|+|.++.+. .--..+|..++.|++|+++++.++.. ..++..+...++++.++++++.
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~ 62 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE 62 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc
Confidence 455555554 11123356666677777777766310 1233444555666777766665
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=1.8e-11 Score=106.89 Aligned_cols=124 Identities=27% Similarity=0.351 Sum_probs=40.6
Q ss_pred CCCCCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhh-hcccc
Q 036269 32 INTFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL-SFLIN 109 (623)
Q Consensus 32 ~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~-~~l~~ 109 (623)
.....+++.|++.++.|+.+.... .+.+|+.|++++|.+.++.. +..+++|++|++++|.+ ..+...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I---~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRI---SSISEGLDKNLPN 89 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS------S-CHHHHHH-TT
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCC---CccccchHHhCCc
Confidence 333455677777777777665444 46677777777777776665 56777777777777777 4554444 35677
Q ss_pred CcEEeccCCcCCCCc---ccccCCcCCcEEEcCCCCCcccc----ccccCCCccCEEec
Q 036269 110 LRTLSLHDCQHFGDL---SLIGELSLLEILDLSESDVSEIP----VSFGRLGHLRLLDL 161 (623)
Q Consensus 110 L~~L~l~~~~~l~~i---~~~~~l~~L~~L~l~~~~i~~lp----~~i~~l~~L~~L~l 161 (623)
|+.|++++|. +.++ ..+..+++|++|++.+|.++.-+ ..+..+|+|+.||-
T Consensus 90 L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7777777776 6444 45566677777777777665333 13344555555544
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=8.2e-12 Score=123.04 Aligned_cols=191 Identities=26% Similarity=0.348 Sum_probs=160.6
Q ss_pred ecCCCCCCCCCCC---CCCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccc
Q 036269 21 KAGVELKDWPSIN---TFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFS 96 (623)
Q Consensus 21 ~~~~~~~~~~~~~---~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~ 96 (623)
..+..++++|--+ .+..-..++++.|.+..+|... -+..|..+.+.+|.+..+|..+ ..+..|.+|+++.|++
T Consensus 57 Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~Nql-- 133 (722)
T KOG0532|consen 57 LSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQL-- 133 (722)
T ss_pred cccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchh--
Confidence 3345667776322 2233445888999999999877 7788999999999999888876 8999999999999999
Q ss_pred cCCCchhhhccccCcEEeccCCcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhh
Q 036269 97 LFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVL 175 (623)
Q Consensus 97 ~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~ 175 (623)
..+|..++.|+ |++|.+++|+ ++.+ ..++.+..|..||.+.|.+..+|..++.+..|+.|+++. +.+..+|.+ +
T Consensus 134 -S~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l 208 (722)
T KOG0532|consen 134 -SHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-L 208 (722)
T ss_pred -hcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-H
Confidence 78999888876 8999999998 8777 778888999999999999999999999999999999999 667788887 5
Q ss_pred hccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc
Q 036269 176 SRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD 232 (623)
Q Consensus 176 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 232 (623)
.. -.|..|+++.|++ ..+|..+.+|+.|+.|.+.+|.+..-|..
T Consensus 209 ~~-LpLi~lDfScNki------------s~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 209 CS-LPLIRLDFSCNKI------------SYLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred hC-CceeeeecccCce------------eecchhhhhhhhheeeeeccCCCCCChHH
Confidence 64 4588999999998 57888999999999999999998766654
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=2e-10 Score=100.42 Aligned_cols=107 Identities=27% Similarity=0.326 Sum_probs=26.9
Q ss_pred hCCCcccEEEccCCcccccCCCchhhh-ccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccc-cCCCcc
Q 036269 79 QGMKDLKVLDLGGSGVFSLFSLPSSLS-FLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSF-GRLGHL 156 (623)
Q Consensus 79 ~~l~~Lr~L~l~~~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L 156 (623)
.+..++|+|++.++.+ ..+. .++ .+.+|+.|++++|. ++.++.+..+++|++|++++|.++.+...+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I---~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQI---STIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccc---cccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 3445566666666666 3322 233 35566666666666 655555556666666666666666554333 245566
Q ss_pred CEEeccCCCCCCcCch-hhhhccccCcEEEeccccc
Q 036269 157 RLLDLTDCYNLELIPR-GVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 157 ~~L~l~~~~~~~~l~~-~~~~~l~~L~~L~l~~~~~ 191 (623)
+.|++++ +.+.++.. ..+..+++|+.|++.+|.+
T Consensus 91 ~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 91 QELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 6666655 33332221 1144555555555555554
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1e-10 Score=106.35 Aligned_cols=133 Identities=24% Similarity=0.294 Sum_probs=76.1
Q ss_pred CCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEe
Q 036269 81 MKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLD 160 (623)
Q Consensus 81 l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 160 (623)
++.|..+|+++|.+ ..+-.++.-.|.+|.|++++|. +..+..+..+++|+.||+++|.++++-..-.++-|.+.|.
T Consensus 283 Wq~LtelDLS~N~I---~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLI---TQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccch---hhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 34566666666666 4555555555666666666666 5555445666666666666666665544444556666666
Q ss_pred ccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCC
Q 036269 161 LTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMP 230 (623)
Q Consensus 161 l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 230 (623)
+.+ +.+..+.. ++++-+|..|++++|.+. .-.....+++++.|+.+.+.+|.+..++
T Consensus 359 La~-N~iE~LSG--L~KLYSLvnLDl~~N~Ie----------~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 359 LAQ-NKIETLSG--LRKLYSLVNLDLSSNQIE----------ELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhh-hhHhhhhh--hHhhhhheeccccccchh----------hHHHhcccccccHHHHHhhcCCCccccc
Confidence 666 45555543 556666666666666552 1223445566666666666555544433
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.1e-10 Score=105.99 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=67.8
Q ss_pred CCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-ccccCCcCCcEE
Q 036269 58 PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLEIL 136 (623)
Q Consensus 58 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~~L 136 (623)
..|+.+|+++|.+..+..++ .-.|++|+|++++|.+. .+. .+..+++|+.||+++|. +..+ ..-.++-|.+.|
T Consensus 284 q~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~---~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIR---TVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTL 357 (490)
T ss_pred hhhhhccccccchhhhhhhh-hhccceeEEecccccee---eeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEeee
Confidence 44556666666665554443 45566666666666552 222 24555666666666665 5444 222345555666
Q ss_pred EcCCCCCccccccccCCCccCEEeccCCCCCCcCc-hhhhhccccCcEEEeccccc
Q 036269 137 DLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIP-RGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 137 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~-~~~~~~l~~L~~L~l~~~~~ 191 (623)
.+++|.+..+. +++++.+|..|++++ +.+..+. ..-+++++.|+++.+.+|.+
T Consensus 358 ~La~N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 358 KLAQNKIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ehhhhhHhhhh-hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCc
Confidence 66666555542 555666666666666 3333332 11256666666666666655
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=6.5e-11 Score=116.81 Aligned_cols=189 Identities=20% Similarity=0.274 Sum_probs=158.4
Q ss_pred EEcccCCcccccccC---CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269 41 ISLMFNDIHEVHEGL---QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD 117 (623)
Q Consensus 41 L~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~ 117 (623)
|.+++..+..+|... .+..-...+++.|++..+|..+ ..|-.|..+.++.|.+ ..+|..+.++..|.+|+++.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~---r~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEA-CAFVSLESLILYHNCI---RTIPEAICNLEALTFLDLSS 130 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHH-HHHHHHHHHHHHhccc---eecchhhhhhhHHHHhhhcc
Confidence 445555555665544 4444556789999999999886 7889999999999999 89999999999999999999
Q ss_pred CcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccc
Q 036269 118 CQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFE 196 (623)
Q Consensus 118 ~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~ 196 (623)
|. +..+ ..++. --|+.|-+++|+++.+|..++.+.+|..|+.+. +.+..+|.. ++.+.+|+.|.+..|.+
T Consensus 131 Nq-lS~lp~~lC~-lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~~l~slr~l~vrRn~l----- 201 (722)
T KOG0532|consen 131 NQ-LSHLPDGLCD-LPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVRRNHL----- 201 (722)
T ss_pred ch-hhcCChhhhc-CcceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hhhHHHHHHHHHhhhhh-----
Confidence 98 7666 34444 358999999999999999999999999999998 567788887 89999999999999887
Q ss_pred cccccccccccccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCC
Q 036269 197 NEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEE 250 (623)
Q Consensus 197 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 250 (623)
...+.++..++ |..||++.|.+..+|.. ..+..|+.|.+.+|+...
T Consensus 202 -------~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 202 -------EDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred -------hhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 46778888665 88999999999999988 899999999999887543
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=1.6e-09 Score=111.33 Aligned_cols=190 Identities=31% Similarity=0.369 Sum_probs=138.1
Q ss_pred EEEcccCCc-ccccccCCCCCcceEEccCCCCCCCChhhHhCCC-cccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269 40 GISLMFNDI-HEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMK-DLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD 117 (623)
Q Consensus 40 ~L~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~-~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~ 117 (623)
.+....+.+ ..+......+.++.|++.+|.+.++++.. ...+ +|+.|++++|.+ ..+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i---~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKI---ESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccccch---hhhhhhhhccccccccccCC
Confidence 356666655 33333335567888888888888877754 4453 888888888888 67777778888888888888
Q ss_pred CcCCCCccccc-CCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccc
Q 036269 118 CQHFGDLSLIG-ELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFE 196 (623)
Q Consensus 118 ~~~l~~i~~~~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~ 196 (623)
|+ +.+++... .+++|+.|++++|.+..+|..+.....|+++.++++..+ ..+.. +.++.++..+.+.++.+
T Consensus 173 N~-l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n~~----- 244 (394)
T COG4886 173 ND-LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNNKL----- 244 (394)
T ss_pred ch-hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCcee-----
Confidence 88 87774433 788888888888888888877777777888888874333 34433 67778888887777665
Q ss_pred cccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCC
Q 036269 197 NEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGP 248 (623)
Q Consensus 197 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 248 (623)
...+..++.+.+++.|+++.|.+..++......+++.++++++..
T Consensus 245 -------~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 245 -------EDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred -------eeccchhccccccceeccccccccccccccccCccCEEeccCccc
Confidence 233566778888888888888887777666777888888776553
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=2.8e-09 Score=109.52 Aligned_cols=185 Identities=30% Similarity=0.387 Sum_probs=152.2
Q ss_pred CCCCCCCCCCCCcEEEcccCCcccccccCCCC--CcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhh
Q 036269 27 KDWPSINTFEDLTGISLMFNDIHEVHEGLQCP--RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL 104 (623)
Q Consensus 27 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~ 104 (623)
.+...+..+..++.+++..+.++++++..... +|+.|++++|.+.+++.. ...++.|+.|++++|.+ ..+|...
T Consensus 107 ~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l---~~l~~~~ 182 (394)
T COG4886 107 SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDL---SDLPKLL 182 (394)
T ss_pred cCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchh---hhhhhhh
Confidence 33444455677999999999999999988443 899999999999988644 48999999999999999 7888877
Q ss_pred hccccCcEEeccCCcCCCCccc-ccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcE
Q 036269 105 SFLINLRTLSLHDCQHFGDLSL-IGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEE 183 (623)
Q Consensus 105 ~~l~~L~~L~l~~~~~l~~i~~-~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~ 183 (623)
...+.|+.|++++|. +.+++. .+...+|+++.+++|.+...+..+.++.++..+.+.+ +.+..++.. ++.+..++.
T Consensus 183 ~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~ 259 (394)
T COG4886 183 SNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLET 259 (394)
T ss_pred hhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccce
Confidence 789999999999999 888844 4567779999999998777788899999999999777 555555543 889999999
Q ss_pred EEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCC
Q 036269 184 LYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPS 231 (623)
Q Consensus 184 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 231 (623)
|++++|.+. .+. .++.+.+++.|+++++.....+.
T Consensus 260 L~~s~n~i~------------~i~-~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 260 LDLSNNQIS------------SIS-SLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ecccccccc------------ccc-cccccCccCEEeccCccccccch
Confidence 999999872 222 38889999999999987655443
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4.6e-10 Score=107.50 Aligned_cols=153 Identities=22% Similarity=0.216 Sum_probs=68.3
Q ss_pred CCCCcEEEcccCCcccccc--cC-CCCCcceEEccCCCCC--CCChhhHhCCCcccEEEccCCcccccCCCchh--hhcc
Q 036269 35 FEDLTGISLMFNDIHEVHE--GL-QCPRLQALFLQKNDLL--DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS--LSFL 107 (623)
Q Consensus 35 ~~~l~~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~--~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~--~~~l 107 (623)
+++|+.+.+..+.+...+. -. .|++++.|+|++|-+. ..-..+...+|+|+.|+++.|.+. ....+ -..+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~---~~~~s~~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS---NFISSNTTLLL 196 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc---CCccccchhhh
Confidence 3455555555554443331 11 4555555555555544 111223345555555555555442 11111 1234
Q ss_pred ccCcEEeccCCcCC--CCc-ccccCCcCCcEEEcCCCC-CccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcE
Q 036269 108 INLRTLSLHDCQHF--GDL-SLIGELSLLEILDLSESD-VSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEE 183 (623)
Q Consensus 108 ~~L~~L~l~~~~~l--~~i-~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~ 183 (623)
++|+.|.++.|. + .++ .....+++|+.|++..|. +.........++.|+.|++++++.+..-.....+.++.|+.
T Consensus 197 ~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 555555555555 4 223 334445555555555552 22111222334455555555544333221112445555555
Q ss_pred EEeccccc
Q 036269 184 LYMSKTFC 191 (623)
Q Consensus 184 L~l~~~~~ 191 (623)
|+++.+.+
T Consensus 276 Lnls~tgi 283 (505)
T KOG3207|consen 276 LNLSSTGI 283 (505)
T ss_pred hhccccCc
Confidence 55555443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1e-09 Score=105.13 Aligned_cols=192 Identities=17% Similarity=0.170 Sum_probs=126.7
Q ss_pred ccccccC-CCCCcceEEccCCCCCCCCh-hhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc--
Q 036269 49 HEVHEGL-QCPRLQALFLQKNDLLDIPD-PFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-- 124 (623)
Q Consensus 49 ~~l~~~~-~~~~L~~L~l~~~~~~~l~~-~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-- 124 (623)
+++.+.- ++++|+...|+++.....+. .....|+++|.||++.|-+.++..+-.....+++|+.|+++.|. +..+
T Consensus 111 Dki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~ 189 (505)
T KOG3207|consen 111 DKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFIS 189 (505)
T ss_pred HHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCcc
Confidence 3443333 67788888888888764442 23477888888888888765333444455678888888888887 6443
Q ss_pred -ccccCCcCCcEEEcCCCCCc--cccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccccccccc
Q 036269 125 -SLIGELSLLEILDLSESDVS--EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDS 201 (623)
Q Consensus 125 -~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 201 (623)
..-..+++|+.|.++.|+++ .+-.....+|+|..|++..|..+..-... ...+..|+.|++++|.+.
T Consensus 190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li--------- 259 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI--------- 259 (505)
T ss_pred ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccc---------
Confidence 22336678888888888887 33334456788888888886433322222 345677888888887663
Q ss_pred ccccccccccCCCCccEEEeecCCCccCCC--c------ccccCccEEEEEeCCCCCCC
Q 036269 202 RSNAKFIELGALSRLTSLHIDIPEGEIMPS--D------MSFQNLTSFSITIGGPEEVP 252 (623)
Q Consensus 202 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~------~~~~~L~~L~l~~~~~~~~~ 252 (623)
.-.....++.++.|+.|+++.+++..+.. . ..+++|+.|++..+....|+
T Consensus 260 -~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 260 -DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred -ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 12223456778888888888877544422 1 56777888888777765554
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.49 E-value=7e-08 Score=90.33 Aligned_cols=87 Identities=24% Similarity=0.299 Sum_probs=51.5
Q ss_pred CCCCCCcEEEcccCCcc-----cccccC-CCCCcceEEccCCCCC----CCChhh------HhCCCcccEEEccCCcccc
Q 036269 33 NTFEDLTGISLMFNDIH-----EVHEGL-QCPRLQALFLQKNDLL----DIPDPF------FQGMKDLKVLDLGGSGVFS 96 (623)
Q Consensus 33 ~~~~~l~~L~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~----~l~~~~------~~~l~~Lr~L~l~~~~~~~ 96 (623)
....+++.+++++|.++ .+.+.+ +.+.|+.-++++-... .+|..+ +.++++|++|+||.|.+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G- 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG- 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC-
Confidence 44567788888888774 233333 4566777776543221 333322 356677777777777775
Q ss_pred cCCCchh----hhccccCcEEeccCCcCCC
Q 036269 97 LFSLPSS----LSFLINLRTLSLHDCQHFG 122 (623)
Q Consensus 97 ~~~lp~~----~~~l~~L~~L~l~~~~~l~ 122 (623)
...+.. +.+++.|+.|.+.+|. ++
T Consensus 106 -~~g~~~l~~ll~s~~~L~eL~L~N~G-lg 133 (382)
T KOG1909|consen 106 -PKGIRGLEELLSSCTDLEELYLNNCG-LG 133 (382)
T ss_pred -ccchHHHHHHHHhccCHHHHhhhcCC-CC
Confidence 333332 3456777777777776 54
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.8e-09 Score=95.58 Aligned_cols=65 Identities=22% Similarity=0.160 Sum_probs=39.7
Q ss_pred cCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccc
Q 036269 372 CLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPR 445 (623)
Q Consensus 372 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 445 (623)
.+|+|..|++++|..+++.... .+.+++.|++|.++.|..|--- - --++.+.|+|.+|++.+|-.
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSlsRCY~i~p~----~----~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLSRCYDIIPE----T----LLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hCCceeeeccccccccCchHHH-HHHhcchheeeehhhhcCCChH----H----eeeeccCcceEEEEeccccC
Confidence 4567777777777666653332 3667777777777777664210 0 11345677777787777743
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=7.1e-09 Score=94.48 Aligned_cols=173 Identities=20% Similarity=0.126 Sum_probs=82.1
Q ss_pred cceEEccCCCCC-CCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc---ccccCCcCCcE
Q 036269 60 LQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL---SLIGELSLLEI 135 (623)
Q Consensus 60 L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i---~~~~~l~~L~~ 135 (623)
|++|||+...++ .-...+++.|.+|+-|++.|+.+. +.+-..+.+-.+|+.|+++.|..+++. -.+..+..|..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld--D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD--DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC--cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 555666655555 222334455666666666666553 334344555556666666666545433 23455566666
Q ss_pred EEcCCCCCcc-----ccccccCCCccCEEeccCCCCCC--cCchhhhhccccCcEEEecccccccccccccccccccccc
Q 036269 136 LDLSESDVSE-----IPVSFGRLGHLRLLDLTDCYNLE--LIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFI 208 (623)
Q Consensus 136 L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 208 (623)
|+++.|.... +-..++ ++|..|+++||..-- .--..+..++++|.+|+++.|.-. .+..+.
T Consensus 265 LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l----------~~~~~~ 332 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML----------KNDCFQ 332 (419)
T ss_pred cCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc----------CchHHH
Confidence 6666654331 011111 345555555542111 111112345556666666554321 223344
Q ss_pred cccCCCCccEEEeecCCCc---cCCCcccccCccEEEEEeC
Q 036269 209 ELGALSRLTSLHIDIPEGE---IMPSDMSFQNLTSFSITIG 246 (623)
Q Consensus 209 ~l~~l~~L~~L~l~~~~~~---~~~~~~~~~~L~~L~l~~~ 246 (623)
.+.+++.|++|.++.|..- .+-.....+.|.+|++.++
T Consensus 333 ~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 4555555666655555420 0111144555666665544
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.48 E-value=8e-08 Score=68.79 Aligned_cols=59 Identities=37% Similarity=0.591 Sum_probs=37.1
Q ss_pred CCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCc
Q 036269 58 PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQ 119 (623)
Q Consensus 58 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 119 (623)
++|+.|++++|.+..++..+|.++++|++|++++|.+ ..++ ..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l---~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL---TSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE---SEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc---CccCHHHHcCCCCCCEEeCcCCc
Confidence 3566666666666666666666666666666666666 3444 345666666666666664
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=1.8e-07 Score=66.90 Aligned_cols=59 Identities=29% Similarity=0.497 Sum_probs=54.0
Q ss_pred CCCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcc
Q 036269 36 EDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGV 94 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~ 94 (623)
++|+.|++++|.++.+++.. .+++|++|++++|.+..+++..|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46899999999999998755 899999999999999988888899999999999999874
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=8.9e-08 Score=89.63 Aligned_cols=185 Identities=19% Similarity=0.140 Sum_probs=103.4
Q ss_pred CCCCcceEEccCCCCC-CCC---hhhHhCCCcccEEEccCCcccccC--CCch---------hhhccccCcEEeccCCcC
Q 036269 56 QCPRLQALFLQKNDLL-DIP---DPFFQGMKDLKVLDLGGSGVFSLF--SLPS---------SLSFLINLRTLSLHDCQH 120 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~-~l~---~~~~~~l~~Lr~L~l~~~~~~~~~--~lp~---------~~~~l~~L~~L~l~~~~~ 120 (623)
.+++|+.|+||+|.+. .-+ ..+++.+..|++|.+.+|.+.... .+.. ....-++||+++..+|.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr- 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR- 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-
Confidence 5667788888777765 211 233466777777777777663100 0111 12234577777777776
Q ss_pred CCCc------ccccCCcCCcEEEcCCCCCc-----cccccccCCCccCEEeccCCCCCCcCc---hhhhhccccCcEEEe
Q 036269 121 FGDL------SLIGELSLLEILDLSESDVS-----EIPVSFGRLGHLRLLDLTDCYNLELIP---RGVLSRLRKLEELYM 186 (623)
Q Consensus 121 l~~i------~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~~~~l~---~~~~~~l~~L~~L~l 186 (623)
+.+- ..+...+.|+.+.+..|.|. -+...+..+++|+.|++++|.+...-. ...+..+++|+++++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 5322 34556677777777777664 123456677777777777744332111 112455677777777
Q ss_pred cccccccccccccccccccccccc-cCCCCccEEEeecCCCccCC-----Cc-ccccCccEEEEEeCCC
Q 036269 187 SKTFCHWQFENEDDSRSNAKFIEL-GALSRLTSLHIDIPEGEIMP-----SD-MSFQNLTSFSITIGGP 248 (623)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~-----~~-~~~~~L~~L~l~~~~~ 248 (623)
+.|.+...- ...+...+ ...++|+.+.+.+|....-. .. ...+.|.+|.++.|..
T Consensus 249 ~dcll~~~G-------a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEG-------AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccc-------HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 777653211 12222222 23567777777777632111 11 3466777777777654
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.34 E-value=1.5e-06 Score=93.68 Aligned_cols=106 Identities=25% Similarity=0.380 Sum_probs=86.1
Q ss_pred cccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCC-Cc-ccccCCcCCcEEEcCCCCCc-cccccccCCCccCEE
Q 036269 83 DLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFG-DL-SLIGELSLLEILDLSESDVS-EIPVSFGRLGHLRLL 159 (623)
Q Consensus 83 ~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~-~i-~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L 159 (623)
.++.|+|+++.+. +.+|..+..+++|+.|++++|. +. .+ ..++.+++|+.|++++|.++ .+|..++++++|++|
T Consensus 419 ~v~~L~L~~n~L~--g~ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLR--GFIPNDISKLRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCcc--ccCCHHHhCCCCCCEEECCCCc-ccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 4788899998886 7888888899999999999988 74 45 57888999999999999888 788889999999999
Q ss_pred eccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269 160 DLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 160 ~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 191 (623)
++++|...+.+|..+.....++..+++.+|..
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 99997777788876333345677888887754
No 44
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.33 E-value=3.3e-08 Score=104.85 Aligned_cols=119 Identities=17% Similarity=0.146 Sum_probs=64.6
Q ss_pred hhceeEeecccCCccccc--ccccccCccCccEEEEecc-cCceeecccccccccccccccceeecccCccccccccccc
Q 036269 292 LRSEILALGDVNDLENIV--SDLAHDGFNELMFLAIVGC-NEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQL 368 (623)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 368 (623)
++|+.+.+.+|..+.+.. +.. ..++.|+.|+++++ ......+.. .......+++|+.|++.++..+++.....+
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALA--LKCPNLEELDLSGCCLLITLSPLL-LLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred chhhHhhhcccccCChhhHHHHH--hhCchhheecccCcccccccchhH-hhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 677777777776665521 222 45677777777763 222211100 001233346677777776665444322111
Q ss_pred CCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccce
Q 036269 369 PAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLV 414 (623)
Q Consensus 369 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 414 (623)
. ..+++|+.|.+.+|..+++..-......+++|++|+++.|..++
T Consensus 265 ~-~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 265 A-SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred H-hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 1 13567777776666665554444455666777777777766653
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.33 E-value=6.2e-08 Score=99.61 Aligned_cols=102 Identities=31% Similarity=0.378 Sum_probs=44.9
Q ss_pred CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcE
Q 036269 56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEI 135 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~ 135 (623)
.+.+++.|++.+|.+..+... +..+++|++|++++|.++ .+. .+..++.|+.|++.+|. +..+..+..+..|+.
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~---~i~-~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKIT---KLE-GLSTLTLLKELNLSGNL-ISDISGLESLKSLKL 166 (414)
T ss_pred cccceeeeeccccchhhcccc-hhhhhcchheeccccccc---ccc-chhhccchhhheeccCc-chhccCCccchhhhc
Confidence 344444555555544433321 134455555555555442 221 13334445555555554 444444444445555
Q ss_pred EEcCCCCCcccccc-ccCCCccCEEeccC
Q 036269 136 LDLSESDVSEIPVS-FGRLGHLRLLDLTD 163 (623)
Q Consensus 136 L~l~~~~i~~lp~~-i~~l~~L~~L~l~~ 163 (623)
+++++|.+..+... ...+.+++.+++.+
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGG 195 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccC
Confidence 55555544433321 24444444444444
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.33 E-value=1.4e-06 Score=93.85 Aligned_cols=104 Identities=23% Similarity=0.264 Sum_probs=87.3
Q ss_pred cCcEEeccCCcCCC-Cc-ccccCCcCCcEEEcCCCCCc-cccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEE
Q 036269 109 NLRTLSLHDCQHFG-DL-SLIGELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY 185 (623)
Q Consensus 109 ~L~~L~l~~~~~l~-~i-~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~ 185 (623)
.++.|+++++. +. .+ ..++.+++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|+
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCC-ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEE
Confidence 47889999998 74 44 67899999999999999998 88989999999999999997777788876 89999999999
Q ss_pred ecccccccccccccccccccccccccCC-CCccEEEeecCC
Q 036269 186 MSKTFCHWQFENEDDSRSNAKFIELGAL-SRLTSLHIDIPE 225 (623)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 225 (623)
+++|.+. ..+|..++.. .++..+++.+|.
T Consensus 497 Ls~N~l~-----------g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLS-----------GRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCccc-----------ccCChHHhhccccCceEEecCCc
Confidence 9999874 4556666553 466788888876
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=9.4e-08 Score=98.28 Aligned_cols=175 Identities=26% Similarity=0.314 Sum_probs=128.7
Q ss_pred CCCCCCCcEEEcccCCcccccc-cCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccC
Q 036269 32 INTFEDLTGISLMFNDIHEVHE-GLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINL 110 (623)
Q Consensus 32 ~~~~~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L 110 (623)
+..+.++..+++..|.+..+.. ...+++|+.|++++|.++++.. +..++.|+.|++++|.+. .+. .+..++.|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~---~~~-~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS---DIS-GLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcch---hcc-CCccchhh
Confidence 4667889999999999999988 4489999999999999998876 688999999999999984 433 24458999
Q ss_pred cEEeccCCcCCCCccc--ccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhcccc--CcEEEe
Q 036269 111 RTLSLHDCQHFGDLSL--IGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRK--LEELYM 186 (623)
Q Consensus 111 ~~L~l~~~~~l~~i~~--~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~--L~~L~l 186 (623)
+.+++++|. +..+.. ...+.+++.+++.+|.+..+. .+..+..+..+++.. +.+..+.. +..+.. |+.+++
T Consensus 165 ~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~-n~i~~~~~--l~~~~~~~L~~l~l 239 (414)
T KOG0531|consen 165 KLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLD-NKISKLEG--LNELVMLHLRELYL 239 (414)
T ss_pred hcccCCcch-hhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccc-ccceeccC--cccchhHHHHHHhc
Confidence 999999999 887866 688999999999999887543 344444555556665 33333322 233333 788888
Q ss_pred cccccccccccccccccccccccccCCCCccEEEeecCCCccC
Q 036269 187 SKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIM 229 (623)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 229 (623)
.++.+. .....+..+..+..+++..+....+
T Consensus 240 ~~n~i~------------~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 240 SGNRIS------------RSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred ccCccc------------cccccccccccccccchhhcccccc
Confidence 887762 1214556677777777777665443
No 48
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.27 E-value=6.8e-08 Score=102.51 Aligned_cols=144 Identities=22% Similarity=0.221 Sum_probs=85.6
Q ss_pred CccCccEEEEecccCceeecccccccccccccccceeecccC-ccccccccccc-CCCcCCCccEEEEeecCCcccccch
Q 036269 316 GFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDN-RNFVEICHGQL-PAGCLSNVKRLDVRDCGSVLKILPS 393 (623)
Q Consensus 316 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~ 393 (623)
.+++|+.+.+.+|..+....-. .....++.|+.|+++++ ........... -...+++|+.++++.|..+++..-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLD---ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hCchhhHhhhcccccCChhhHH---HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 3678888888888766652200 14556788888888873 22221110000 1124588888888888777765555
Q ss_pred hHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcC
Q 036269 394 HLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFC 470 (623)
Q Consensus 394 ~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C 470 (623)
.....+++|+.|.+.+|..+++. |+ ......+++|++|++++|..+++-.. ......+++|++|.+..+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~----gl---~~i~~~~~~L~~L~l~~c~~~~d~~l-~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDE----GL---VSIAERCPSLRELDLSGCHGLTDSGL-EALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHHhhCCCcceEccCCCCccchh----HH---HHHHHhcCcccEEeeecCccchHHHH-HHHHHhCcchhhhhhhhc
Confidence 54555888888888888875543 22 22335578888888888877643111 111333555555554444
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=1.6e-08 Score=102.94 Aligned_cols=178 Identities=23% Similarity=0.227 Sum_probs=117.9
Q ss_pred CCCCCCCCcEEEcccCCcccccccCCC-CCcceEEccCCCCC-----------CCChhhHhCCCcccEEEccCCcccccC
Q 036269 31 SINTFEDLTGISLMFNDIHEVHEGLQC-PRLQALFLQKNDLL-----------DIPDPFFQGMKDLKVLDLGGSGVFSLF 98 (623)
Q Consensus 31 ~~~~~~~l~~L~l~~~~~~~l~~~~~~-~~L~~L~l~~~~~~-----------~l~~~~~~~l~~Lr~L~l~~~~~~~~~ 98 (623)
.|..++.||+|.+.++.+........+ ..|+.|.. +|... ++-.+ .....|.+.+.++|.+ .
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns--~~Wn~L~~a~fsyN~L---~ 177 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS--PVWNKLATASFSYNRL---V 177 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc--hhhhhHhhhhcchhhH---H
Confidence 356678899999998887543221111 22334332 11111 11111 1245677778888877 5
Q ss_pred CCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhcc
Q 036269 99 SLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRL 178 (623)
Q Consensus 99 ~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l 178 (623)
.+-.++.-++.|+.|++++|. +.+...+..+++|++||++.|.+..+|.--..-.+|+.|.+++ |.++.+-. +.++
T Consensus 178 ~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~g--ie~L 253 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALTTLRG--IENL 253 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhhhheeeeecc-cHHHhhhh--HHhh
Confidence 555667778889999999988 7777788888899999999998888774322223488888888 66666665 7888
Q ss_pred ccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCcc
Q 036269 179 RKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEI 228 (623)
Q Consensus 179 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 228 (623)
++|+.|+++.|.+... .....++.+..|+.|++.||.+..
T Consensus 254 ksL~~LDlsyNll~~h----------seL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEH----------SELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhhccchhHhhhhcc----------hhhhHHHHHHHHHHHhhcCCcccc
Confidence 8888998888876321 223446677788888888887533
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=3.6e-06 Score=82.99 Aligned_cols=136 Identities=19% Similarity=0.343 Sum_probs=73.4
Q ss_pred CCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccC
Q 036269 373 LSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKG 452 (623)
Q Consensus 373 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~ 452 (623)
+++++.|++++| .++. +|. --++|+.|.+++|+.++.+ |..+ .++|+.|++++|..++.+
T Consensus 51 ~~~l~~L~Is~c-~L~s-LP~----LP~sLtsL~Lsnc~nLtsL---------P~~L--P~nLe~L~Ls~Cs~L~sL--- 110 (426)
T PRK15386 51 ARASGRLYIKDC-DIES-LPV----LPNELTEITIENCNNLTTL---------PGSI--PEGLEKLTVCHCPEISGL--- 110 (426)
T ss_pred hcCCCEEEeCCC-CCcc-cCC----CCCCCcEEEccCCCCcccC---------Cchh--hhhhhheEccCccccccc---
Confidence 467788888887 5554 452 1246888888888887665 3322 457888888888766654
Q ss_pred CCcccccCCccEEEEEc--CCCcceeccCcccCcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcc
Q 036269 453 DTQFVSLHDLKKIRVVF--CDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLR 530 (623)
Q Consensus 453 ~~~~~~l~~L~~L~l~~--C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~ 530 (623)
.++|+.|++.. |..+..+ |. +|++|.+.++.. ......| ..-.++|+.|+|++|..+.
T Consensus 111 ------P~sLe~L~L~~n~~~~L~~L-Ps------sLk~L~I~~~n~-----~~~~~lp--~~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 111 ------PESVRSLEIKGSATDSIKNV-PN------GLTSLSINSYNP-----ENQARID--NLISPSLKTLSLTGCSNII 170 (426)
T ss_pred ------ccccceEEeCCCCCcccccC-cc------hHhheecccccc-----ccccccc--cccCCcccEEEecCCCccc
Confidence 24566777653 2223333 22 344554432110 0000000 0112567777777776553
Q ss_pred eecchhhhhccCCCCEEEEccCC
Q 036269 531 NLFTTSMVKSLVRLESLEVSRCP 553 (623)
Q Consensus 531 ~~~~~~~~~~l~~L~~L~i~~c~ 553 (623)
+|+ .-..+|+.|+++.+.
T Consensus 171 -LP~----~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 171 -LPE----KLPESLQSITLHIEQ 188 (426)
T ss_pred -Ccc----cccccCcEEEecccc
Confidence 221 122577777776643
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=4.5e-07 Score=83.00 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=35.6
Q ss_pred HHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCc
Q 036269 289 NLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNR 358 (623)
Q Consensus 289 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 358 (623)
..++++..+.+..|+.-+. ...-....+|.+.-|.+..+ ++.++.... ....|+.|..|.+.++|
T Consensus 196 r~Fpnv~sv~v~e~PlK~~-s~ek~se~~p~~~~LnL~~~-~idswasvD---~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTE-SSEKGSEPFPSLSCLNLGAN-NIDSWASVD---ALNGFPQLVDLRVSENP 260 (418)
T ss_pred hhcccchheeeecCcccch-hhcccCCCCCcchhhhhccc-ccccHHHHH---HHcCCchhheeeccCCc
Confidence 3446777777766653222 11222234555556666555 444443322 55667777777777777
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.10 E-value=1.8e-06 Score=92.65 Aligned_cols=138 Identities=25% Similarity=0.275 Sum_probs=75.6
Q ss_pred CCcccEEEccCCcccccCCCchhh-hccccCcEEeccCCcCC--CCc-ccccCCcCCcEEEcCCCCCccccccccCCCcc
Q 036269 81 MKDLKVLDLGGSGVFSLFSLPSSL-SFLINLRTLSLHDCQHF--GDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHL 156 (623)
Q Consensus 81 l~~Lr~L~l~~~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~l--~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L 156 (623)
-.+|++|+++|....+ ..=|..+ ..+|.|+.|.+.+-. + .++ ....++++|+.||+|+++++.+ .+++++++|
T Consensus 121 r~nL~~LdI~G~~~~s-~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFS-NGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhh-ccHHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 3567777777654321 2222233 256777777777654 3 233 4555677777777777777766 567777777
Q ss_pred CEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCC
Q 036269 157 RLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG 226 (623)
Q Consensus 157 ~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 226 (623)
+.|.+++-.....-.-..+.++++|++||++........ .......+--..+++||.||++++..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-----~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-----KIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-----HHHHHHHHhcccCccccEEecCCcch
Confidence 777776633222111111556777777777664331100 00111122224467777777777653
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.09 E-value=1.2e-06 Score=93.96 Aligned_cols=131 Identities=22% Similarity=0.217 Sum_probs=78.0
Q ss_pred CCcceEEccCCCCC--CCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcE
Q 036269 58 PRLQALFLQKNDLL--DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEI 135 (623)
Q Consensus 58 ~~L~~L~l~~~~~~--~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~ 135 (623)
.+|++|+++|.... ..+..+...+|.||.|.+++-.+.. +.+.....++++|+.||+++++ ++++..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~-~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN-DDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc-hhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHH
Confidence 56777777665543 4444444557777777777665532 2333444567777777777777 777777777777777
Q ss_pred EEcCCCCCcccc--ccccCCCccCEEeccCCCCCCcCch------hhhhccccCcEEEeccccc
Q 036269 136 LDLSESDVSEIP--VSFGRLGHLRLLDLTDCYNLELIPR------GVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 136 L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~l~~------~~~~~l~~L~~L~l~~~~~ 191 (623)
|.+.+-.+..-. ..+..+++|+.||++..... ..+. +--..+++|+.|+.+++.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcch
Confidence 776665555322 34556777777777763222 1111 0012367777777777655
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.00 E-value=1.3e-05 Score=79.19 Aligned_cols=137 Identities=19% Similarity=0.270 Sum_probs=89.9
Q ss_pred HHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcce
Q 036269 396 VQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQ 475 (623)
Q Consensus 396 ~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~ 475 (623)
+..+..++.|++++| .|+++ | ...++|++|.+++|.+++.++ ..+ .++|++|++.+|..+..
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sL---------P---~LP~sLtsL~Lsnc~nLtsLP---~~L--P~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESL---------P---VLPNELTEITIENCNNLTTLP---GSI--PEGLEKLTVCHCPEISG 109 (426)
T ss_pred HHHhcCCCEEEeCCC-CCccc---------C---CCCCCCcEEEccCCCCcccCC---chh--hhhhhheEccCcccccc
Confidence 556789999999997 77776 4 124579999999998887763 222 36899999999877654
Q ss_pred eccCcccCcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEec--CCCcceecchhhhhccCCCCEEEEccCC
Q 036269 476 VFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRG--CGKLRNLFTTSMVKSLVRLESLEVSRCP 553 (623)
Q Consensus 476 ~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~--c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 553 (623)
+ | .+|+.|++++ |..+..+ .++|++|.+.++.
T Consensus 110 L-P-------------------------------------~sLe~L~L~~n~~~~L~~L--------PssLk~L~I~~~n 143 (426)
T PRK15386 110 L-P-------------------------------------ESVRSLEIKGSATDSIKNV--------PNGLTSLSINSYN 143 (426)
T ss_pred c-c-------------------------------------cccceEEeCCCCCcccccC--------cchHhheeccccc
Confidence 4 1 3466666653 2234443 3467888886543
Q ss_pred chhhhhcCCCCcccCcCCCcceeec-CcccceecccCcccceecCCCCcceeecCCccEEEeccC
Q 036269 554 TLQEIIMNDEGEVGLQGASTEKITF-PSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDC 617 (623)
Q Consensus 554 ~l~~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c 617 (623)
...... ....+ ++|++|.+.+|..+. ++. +. +.+|+.|.+..+
T Consensus 144 ~~~~~~--------------lp~~LPsSLk~L~Is~c~~i~-LP~-~L-----P~SLk~L~ls~n 187 (426)
T PRK15386 144 PENQAR--------------IDNLISPSLKTLSLTGCSNII-LPE-KL-----PESLQSITLHIE 187 (426)
T ss_pred cccccc--------------cccccCCcccEEEecCCCccc-Ccc-cc-----cccCcEEEeccc
Confidence 221110 11234 489999999998764 333 22 479999998765
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=9.1e-06 Score=53.01 Aligned_cols=34 Identities=41% Similarity=0.556 Sum_probs=15.7
Q ss_pred cccEEEccCCcccccCCCchhhhccccCcEEeccCCc
Q 036269 83 DLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ 119 (623)
Q Consensus 83 ~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 119 (623)
+|++|++++|.+ ..+|..+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~N~i---~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQI---TDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS----SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCC---cccCchHhCCCCCCEEEecCCC
Confidence 445555555554 3444444455555555555544
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.92 E-value=2e-05 Score=68.43 Aligned_cols=100 Identities=27% Similarity=0.371 Sum_probs=69.4
Q ss_pred CCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhh-hccccCcEEeccCCcCCCC---cccccCCcCC
Q 036269 58 PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL-SFLINLRTLSLHDCQHFGD---LSLIGELSLL 133 (623)
Q Consensus 58 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~l~~---i~~~~~l~~L 133 (623)
.....+||++|.+..++. |..++.|..|.+.+|.++ .+-+.+ ..+++|..|.+.+|. +.. +..+..++.|
T Consensus 42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt---~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRIT---RIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccccchhhccc--CCCccccceEEecCCcce---eeccchhhhccccceEEecCcc-hhhhhhcchhccCCcc
Confidence 345677888888876665 678888888888888874 433333 345678888888877 643 3556677788
Q ss_pred cEEEcCCCCCcccc----ccccCCCccCEEeccC
Q 036269 134 EILDLSESDVSEIP----VSFGRLGHLRLLDLTD 163 (623)
Q Consensus 134 ~~L~l~~~~i~~lp----~~i~~l~~L~~L~l~~ 163 (623)
++|.+-+|.++.-+ ..+.++++|+.||+.+
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 88888887766433 2466777777777765
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=2.8e-05 Score=50.69 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=17.7
Q ss_pred CCcEEEcCCCCCccccccccCCCccCEEeccC
Q 036269 132 LLEILDLSESDVSEIPVSFGRLGHLRLLDLTD 163 (623)
Q Consensus 132 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~ 163 (623)
+|++|++++|.++.+|..+++|++|++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 45555555555555555555666666666655
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=3.4e-07 Score=93.70 Aligned_cols=123 Identities=27% Similarity=0.266 Sum_probs=87.8
Q ss_pred CCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhh-hccccCcE
Q 036269 35 FEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL-SFLINLRT 112 (623)
Q Consensus 35 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~-~~l~~L~~ 112 (623)
..+|...+++.|.+..+-... -++.++.|+|++|.+.+.. .+..+++|++||+++|.+ ..+|..- ..+. |+.
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L---~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCL---RHVPQLSMVGCK-LQL 236 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchh---ccccccchhhhh-hee
Confidence 456777778887776665555 4578888888888887654 257888888888888887 5565432 2343 888
Q ss_pred EeccCCcCCCCcccccCCcCCcEEEcCCCCCcccc--ccccCCCccCEEeccCC
Q 036269 113 LSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIP--VSFGRLGHLRLLDLTDC 164 (623)
Q Consensus 113 L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~ 164 (623)
|.+++|. ++.+..+.++.+|+.||++.|-+...- ..++.+..|+.|++.||
T Consensus 237 L~lrnN~-l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 237 LNLRNNA-LTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred eeecccH-HHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 8888887 777777888888888888888665321 23566777888888874
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=7.2e-05 Score=65.08 Aligned_cols=105 Identities=24% Similarity=0.288 Sum_probs=85.0
Q ss_pred CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269 36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l 115 (623)
.+.-.++++.|.+..++..-.++.|.+|.+..|+++.+.+.+-..+++|..|.+.+|.+..++.+ ..+..|+.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceeee
Confidence 35667999999988777666889999999999999988888777789999999999988322222 23668999999999
Q ss_pred cCCcCCCCc-----ccccCCcCCcEEEcCCCC
Q 036269 116 HDCQHFGDL-----SLIGELSLLEILDLSESD 142 (623)
Q Consensus 116 ~~~~~l~~i-----~~~~~l~~L~~L~l~~~~ 142 (623)
-+|+ +..- ..+.++++|+.||..+-.
T Consensus 121 l~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 9998 7433 568899999999987643
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=2.5e-05 Score=71.92 Aligned_cols=179 Identities=16% Similarity=0.192 Sum_probs=81.2
Q ss_pred CCCCcceEEccCCCCCCCC--hhhHhCCCcccEEEccCCcccc-cCCCchhhhccccCcEEeccCCcCC--CCc-ccccC
Q 036269 56 QCPRLQALFLQKNDLLDIP--DPFFQGMKDLKVLDLGGSGVFS-LFSLPSSLSFLINLRTLSLHDCQHF--GDL-SLIGE 129 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~~l~--~~~~~~l~~Lr~L~l~~~~~~~-~~~lp~~~~~l~~L~~L~l~~~~~l--~~i-~~~~~ 129 (623)
.+..++.++|.+|.+.+.. .+++.++|.|++|+++.|.+.+ ++.+| ..+.+|++|-+.+.. + +.. +.+..
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~-L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG-LSWTQSTSSLDD 144 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC-CChhhhhhhhhc
Confidence 4555666666666665222 2334556666666666665431 01222 134456666665554 4 112 44555
Q ss_pred CcCCcEEEcCCCCCcccc---ccccCC-CccCEEeccCCCCCC--cCchhhhhccccCcEEEeccccccccccccccccc
Q 036269 130 LSLLEILDLSESDVSEIP---VSFGRL-GHLRLLDLTDCYNLE--LIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRS 203 (623)
Q Consensus 130 l~~L~~L~l~~~~i~~lp---~~i~~l-~~L~~L~l~~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 203 (623)
++.++.|.++.|.+..+- ..+... +.+++|++..|.... ... .+...++++..+.+..|.+. +
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~-~l~r~Fpnv~sv~v~e~PlK----------~ 213 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN-KLSRIFPNVNSVFVCEGPLK----------T 213 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH-hHHhhcccchheeeecCccc----------c
Confidence 556666655555333111 011111 233344433331110 000 01122345555545444331 1
Q ss_pred ccccccccCCCCccEEEeecCCCccCCCc---ccccCccEEEEEeCCCC
Q 036269 204 NAKFIELGALSRLTSLHIDIPEGEIMPSD---MSFQNLTSFSITIGGPE 249 (623)
Q Consensus 204 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~ 249 (623)
....+....++.+..|++.-++++..... ..+++|..+.+..++.+
T Consensus 214 ~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 214 ESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 11222233445555666666655444332 66777777777766544
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.67 E-value=6.7e-06 Score=66.56 Aligned_cols=106 Identities=22% Similarity=0.303 Sum_probs=60.3
Q ss_pred CcEEEcccCCcccccccC----CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEE
Q 036269 38 LTGISLMFNDIHEVHEGL----QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL 113 (623)
Q Consensus 38 l~~L~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L 113 (623)
+..+++++|.+..+++.. ...+|+..++++|.+.+.|+.+-.+++....|++.+|.+ ..+|.++..++.|+.|
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei---sdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI---SDVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh---hhchHHHhhhHHhhhc
Confidence 444566777665444332 345566666677766666666655666666666666666 5666666666666666
Q ss_pred eccCCcCCCC-cccccCCcCCcEEEcCCCCCcccc
Q 036269 114 SLHDCQHFGD-LSLIGELSLLEILDLSESDVSEIP 147 (623)
Q Consensus 114 ~l~~~~~l~~-i~~~~~l~~L~~L~l~~~~i~~lp 147 (623)
+++.|+ +.. +..+..+.++-.|+...|....+|
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhcCCCCccccCc
Confidence 666666 422 233333445555555444444444
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.62 E-value=8.1e-06 Score=66.09 Aligned_cols=111 Identities=21% Similarity=0.267 Sum_probs=77.0
Q ss_pred CCcceEEccCCCCCCCChhh--HhCCCcccEEEccCCcccccCCCchhhh-ccccCcEEeccCCcCCCCc-ccccCCcCC
Q 036269 58 PRLQALFLQKNDLLDIPDPF--FQGMKDLKVLDLGGSGVFSLFSLPSSLS-FLINLRTLSLHDCQHFGDL-SLIGELSLL 133 (623)
Q Consensus 58 ~~L~~L~l~~~~~~~l~~~~--~~~l~~Lr~L~l~~~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~l~~i-~~~~~l~~L 133 (623)
..+..++|+.|.+..+++.. +.+..+|...++++|.+ ..+|+.+. +++..+.|++++|. +.++ ..+..++.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f---k~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aL 102 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF---KKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPAL 102 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchh---hhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHh
Confidence 34566777777766444322 35667777778888888 77777665 45578888888887 7666 457777788
Q ss_pred cEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchh
Q 036269 134 EILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRG 173 (623)
Q Consensus 134 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~ 173 (623)
+.|+++.|.+...|..+..+.++-+|+..+ +-...+|.+
T Consensus 103 r~lNl~~N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~d 141 (177)
T KOG4579|consen 103 RSLNLRFNPLNAEPRVIAPLIKLDMLDSPE-NARAEIDVD 141 (177)
T ss_pred hhcccccCccccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence 888888887777777777777777777766 445555544
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.44 E-value=0.00015 Score=66.00 Aligned_cols=183 Identities=15% Similarity=0.095 Sum_probs=110.5
Q ss_pred CCCCCCcEEEcccCCcc-----cccccC-CCCCcceEEccCCCCC----CCChh------hHhCCCcccEEEccCCcccc
Q 036269 33 NTFEDLTGISLMFNDIH-----EVHEGL-QCPRLQALFLQKNDLL----DIPDP------FFQGMKDLKVLDLGGSGVFS 96 (623)
Q Consensus 33 ~~~~~l~~L~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~----~l~~~------~~~~l~~Lr~L~l~~~~~~~ 96 (623)
..+..+..+++|+|.|+ .+...+ +-.+|+..++++-... .++.. ++.+||+|+..+++.|.|.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg- 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG- 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC-
Confidence 34567888899999885 333333 5567777777654322 22221 2468899999999999886
Q ss_pred cCCCchh----hhccccCcEEeccCCcCCCCc--ccc-------------cCCcCCcEEEcCCCCCccccc-----cccC
Q 036269 97 LFSLPSS----LSFLINLRTLSLHDCQHFGDL--SLI-------------GELSLLEILDLSESDVSEIPV-----SFGR 152 (623)
Q Consensus 97 ~~~lp~~----~~~l~~L~~L~l~~~~~l~~i--~~~-------------~~l~~L~~L~l~~~~i~~lp~-----~i~~ 152 (623)
...|.. +.+-+.|.+|.+++|. ++.+ ..+ ..-+.|+......|.+...|. .+..
T Consensus 106 -~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 106 -SEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred -cccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 455543 4566788999998887 6554 122 234678888888887765543 2223
Q ss_pred CCccCEEeccCCCCCCcCch-----hhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCC
Q 036269 153 LGHLRLLDLTDCYNLELIPR-----GVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG 226 (623)
Q Consensus 153 l~~L~~L~l~~~~~~~~l~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 226 (623)
-.+|+.+.+.. +.+..-.. .-+..+.+|+.|++..|.++..- +......+...+.|+.|.+..|-+
T Consensus 184 h~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g-------S~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 184 HENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG-------SRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred hcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh-------HHHHHHHhcccchhhhccccchhh
Confidence 35777777776 33321110 01345677788888777664221 223334455566677777766653
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=9.9e-06 Score=73.72 Aligned_cols=81 Identities=26% Similarity=0.245 Sum_probs=60.0
Q ss_pred CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269 36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115 (623)
Q Consensus 36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l 115 (623)
..++.|+..+|.++.|.-..+++.|++|.|+-|.+..+.+ |..|++|+.|+|..|.+.+++++ ..+.++++||+|-|
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHH-HHHhcCchhhhHhh
Confidence 5677788888888877666678888888888888887766 67888888888888877422222 34567788888888
Q ss_pred cCCc
Q 036269 116 HDCQ 119 (623)
Q Consensus 116 ~~~~ 119 (623)
..|+
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 7776
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.28 E-value=8.9e-05 Score=67.47 Aligned_cols=82 Identities=27% Similarity=0.291 Sum_probs=39.5
Q ss_pred CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCC--cccccCCCchhhhccccCcEEeccCCcCCCCc---ccccCC
Q 036269 56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS--GVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL---SLIGEL 130 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~--~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i---~~~~~l 130 (623)
....|+.|++.+...+.+.. |..+++|++|.++.| .+. ..++.-..++++|++|++++|. ++.+ ..+..+
T Consensus 41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~--~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l 115 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVS--GGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKEL 115 (260)
T ss_pred cccchhhhhhhccceeeccc--CCCcchhhhhcccCCccccc--ccceehhhhCCceeEEeecCCc-cccccccchhhhh
Confidence 34445555555555543333 445556666666655 332 3344334445556666655555 4333 233334
Q ss_pred cCCcEEEcCCCC
Q 036269 131 SLLEILDLSESD 142 (623)
Q Consensus 131 ~~L~~L~l~~~~ 142 (623)
++|..|++..|.
T Consensus 116 ~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 116 ENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCC
Confidence 444444444443
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.05 E-value=0.001 Score=60.77 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=50.6
Q ss_pred hhccccCcEEeccCCcCCCCc------ccccCCcCCcEEEcCCCCCc----ccc-------ccccCCCccCEEeccCCCC
Q 036269 104 LSFLINLRTLSLHDCQHFGDL------SLIGELSLLEILDLSESDVS----EIP-------VSFGRLGHLRLLDLTDCYN 166 (623)
Q Consensus 104 ~~~l~~L~~L~l~~~~~l~~i------~~~~~l~~L~~L~l~~~~i~----~lp-------~~i~~l~~L~~L~l~~~~~ 166 (623)
+..+..+..+++++|. ++.- ..+.+-.+|+..++++-... .+| ..+-++++|+..++++|-+
T Consensus 26 l~~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3446677778888877 6321 33445567777776654222 222 2455677777777777544
Q ss_pred CCcCch---hhhhccccCcEEEeccccc
Q 036269 167 LELIPR---GVLSRLRKLEELYMSKTFC 191 (623)
Q Consensus 167 ~~~l~~---~~~~~l~~L~~L~l~~~~~ 191 (623)
....|. +.+.+-..|.+|.+++|..
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCC
Confidence 444443 3345666777777766643
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.00048 Score=62.80 Aligned_cols=85 Identities=27% Similarity=0.395 Sum_probs=63.2
Q ss_pred CCCCCCcEEEcccCCcccccccCCCCCcceEEccCC--CCC-CCChhhHhCCCcccEEEccCCcccccCCCchhhhcccc
Q 036269 33 NTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKN--DLL-DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLIN 109 (623)
Q Consensus 33 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~--~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~ 109 (623)
..+..+..++..+..++.+...-.+++|+.|.++.| ++. .++.-+ ..+++|++|++++|.+..+.+++ .+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~-pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLR-PLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccc-hhhhhcc
Confidence 344667777777777777766668899999999999 444 554433 67799999999999874212332 3567888
Q ss_pred CcEEeccCCc
Q 036269 110 LRTLSLHDCQ 119 (623)
Q Consensus 110 L~~L~l~~~~ 119 (623)
|..|++.+|.
T Consensus 118 L~~Ldl~n~~ 127 (260)
T KOG2739|consen 118 LKSLDLFNCS 127 (260)
T ss_pred hhhhhcccCC
Confidence 9999999998
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=5.9e-05 Score=68.80 Aligned_cols=77 Identities=27% Similarity=0.234 Sum_probs=35.1
Q ss_pred CCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc---ccccCCcCCc
Q 036269 58 PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL---SLIGELSLLE 134 (623)
Q Consensus 58 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i---~~~~~l~~L~ 134 (623)
.+++.|++-||.+.++.- +.+++.|++|.|+-|.+ ..+ ..+..|++|+.|.|..|. |.++ ..+.++++|+
T Consensus 19 ~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkI---ssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKI---SSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR 91 (388)
T ss_pred HHhhhhcccCCCccHHHH--HHhcccceeEEeecccc---ccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence 344445555555544432 44555555555555555 222 224445555555555554 4333 2333444444
Q ss_pred EEEcCCC
Q 036269 135 ILDLSES 141 (623)
Q Consensus 135 ~L~l~~~ 141 (623)
.|.|..|
T Consensus 92 ~LWL~EN 98 (388)
T KOG2123|consen 92 TLWLDEN 98 (388)
T ss_pred hHhhccC
Confidence 4444333
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.59 E-value=0.006 Score=51.25 Aligned_cols=78 Identities=14% Similarity=0.344 Sum_probs=29.4
Q ss_pred CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc--ccccCCcC
Q 036269 56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSL 132 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~ 132 (623)
.+.+|+.+.+.. .+..++...|.++++|+.+.+..+ + ..++ ..+.+++.++.+.+.+ . +..+ ..+..+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~---~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-L---TSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCTN 82 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-T---SCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-TT
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-c---cccceeeeecccccccccccc-c-cccccccccccccc
Confidence 444555555543 233444444555555555555443 3 2222 2244444555555543 2 2222 23344455
Q ss_pred CcEEEcCC
Q 036269 133 LEILDLSE 140 (623)
Q Consensus 133 L~~L~l~~ 140 (623)
|+.+++..
T Consensus 83 l~~i~~~~ 90 (129)
T PF13306_consen 83 LKNIDIPS 90 (129)
T ss_dssp ECEEEETT
T ss_pred ccccccCc
Confidence 55555543
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.0005 Score=60.08 Aligned_cols=71 Identities=17% Similarity=0.301 Sum_probs=55.4
Q ss_pred CCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceecccCccc
Q 036269 513 PSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDSL 592 (623)
Q Consensus 513 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 592 (623)
..+++++.|.+.+|..+.++--..+-+-.++||.|+|++|+.|++- |+. .+..+++|+.|.|++.|..
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-----GL~-------~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-----GLA-------CLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-----HHH-------HHHHhhhhHHHHhcCchhh
Confidence 4778899999999999988755444556799999999999999877 222 3457788999999988766
Q ss_pred cee
Q 036269 593 TCF 595 (623)
Q Consensus 593 ~~~ 595 (623)
...
T Consensus 190 ~~~ 192 (221)
T KOG3864|consen 190 ANL 192 (221)
T ss_pred hch
Confidence 544
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.00087 Score=58.61 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=49.8
Q ss_pred ccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccce
Q 036269 342 LRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLV 414 (623)
Q Consensus 342 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 414 (623)
....+++++.|.+.+|..+.+|+.+.+.. ..++|+.|+|++|+++++..- ..+..+++|+.|++.+.+.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhhh
Confidence 45566777888888888777775544432 568888888888888887433 347778888888888765543
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.60 E-value=0.0054 Score=33.07 Aligned_cols=21 Identities=48% Similarity=0.716 Sum_probs=13.2
Q ss_pred CCcEEEcCCCCCccccccccC
Q 036269 132 LLEILDLSESDVSEIPVSFGR 152 (623)
Q Consensus 132 ~L~~L~l~~~~i~~lp~~i~~ 152 (623)
+|++||+++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466677777766666655543
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.58 E-value=0.037 Score=46.36 Aligned_cols=106 Identities=14% Similarity=0.283 Sum_probs=58.7
Q ss_pred CChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-c
Q 036269 73 IPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-V 148 (623)
Q Consensus 73 l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~ 148 (623)
++..+|.++++|+.+.+.. .+ ..++ ..+..+++|+.+++.++ +..+ ..+..+++|+.+.+.. .+..++ .
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~---~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~ 75 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TI---KKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDN 75 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T-----EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TT
T ss_pred ECHHHHhCCCCCCEEEECC-Ce---eEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccc
Confidence 3455678888888888875 34 3444 34677888888888763 5555 4567777788888865 444444 3
Q ss_pred cccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecc
Q 036269 149 SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK 188 (623)
Q Consensus 149 ~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~ 188 (623)
.+..+++|+.+.+.. + +..++...+.+. +++.+.+..
T Consensus 76 ~F~~~~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTT-TTECEEEETT-T--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccCc-c-ccEEchhhhcCC-CceEEEECC
Confidence 455688888888865 2 556666656666 777777654
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.96 E-value=0.028 Score=30.24 Aligned_cols=20 Identities=50% Similarity=0.801 Sum_probs=12.4
Q ss_pred cccEEEccCCcccccCCCchhhh
Q 036269 83 DLKVLDLGGSGVFSLFSLPSSLS 105 (623)
Q Consensus 83 ~Lr~L~l~~~~~~~~~~lp~~~~ 105 (623)
+|++|++++|.+ ..+|..+.
T Consensus 1 ~L~~Ldls~n~l---~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNL---TSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEE---SEEGTTTT
T ss_pred CccEEECCCCcC---EeCChhhc
Confidence 366777777766 55665544
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.66 E-value=0.0023 Score=57.10 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=64.4
Q ss_pred CCCCCCCCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhcc
Q 036269 29 WPSINTFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFL 107 (623)
Q Consensus 29 ~~~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l 107 (623)
+..+..+.+++.||++.+.+-.+...+ .+..+..|+++.|.+..+|.++ .....++.+++..|.. ...|.++...
T Consensus 35 v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~---~~~p~s~~k~ 110 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNH---SQQPKSQKKE 110 (326)
T ss_pred hhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccch---hhCCcccccc
Confidence 445677788888888888776555555 4566777788877777677664 7777778888887777 6778888888
Q ss_pred ccCcEEeccCCc
Q 036269 108 INLRTLSLHDCQ 119 (623)
Q Consensus 108 ~~L~~L~l~~~~ 119 (623)
+++++++..+++
T Consensus 111 ~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 111 PHPKKNEQKKTE 122 (326)
T ss_pred CCcchhhhccCc
Confidence 888888887777
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.62 E-value=0.045 Score=27.23 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=6.2
Q ss_pred CCcEEEcCCCCCcccc
Q 036269 132 LLEILDLSESDVSEIP 147 (623)
Q Consensus 132 ~L~~L~l~~~~i~~lp 147 (623)
+|+.|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=90.67 E-value=0.16 Score=28.59 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=11.8
Q ss_pred cCCccEEEeccCCCCc
Q 036269 606 FLALEALQIIDCPGMK 621 (623)
Q Consensus 606 ~~~L~~L~i~~c~~l~ 621 (623)
|++|++|++++|++++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4677788888887765
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.36 E-value=0.5 Score=26.46 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=9.8
Q ss_pred CcceEEccCCCCCCCChhh
Q 036269 59 RLQALFLQKNDLLDIPDPF 77 (623)
Q Consensus 59 ~L~~L~l~~~~~~~l~~~~ 77 (623)
+|++|++++|.+..+|..+
T Consensus 3 ~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 3 NLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCEEECCCCcCCcCCHHH
Confidence 4555555555555555444
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.36 E-value=0.5 Score=26.46 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=9.8
Q ss_pred CcceEEccCCCCCCCChhh
Q 036269 59 RLQALFLQKNDLLDIPDPF 77 (623)
Q Consensus 59 ~L~~L~l~~~~~~~l~~~~ 77 (623)
+|++|++++|.+..+|..+
T Consensus 3 ~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 3 NLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCEEECCCCcCCcCCHHH
Confidence 4555555555555555444
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.82 E-value=0.25 Score=27.77 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=9.4
Q ss_pred CCCCEEEEccCCchhhh
Q 036269 542 VRLESLEVSRCPTLQEI 558 (623)
Q Consensus 542 ~~L~~L~i~~c~~l~~l 558 (623)
++|++|+|++|+++++.
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 45555555555555544
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.98 E-value=0.51 Score=26.42 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=11.0
Q ss_pred cCCcEEEcCCCCCccccc
Q 036269 131 SLLEILDLSESDVSEIPV 148 (623)
Q Consensus 131 ~~L~~L~l~~~~i~~lp~ 148 (623)
.+|++|++++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666666654
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.98 E-value=0.51 Score=26.42 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=11.0
Q ss_pred cCCcEEEcCCCCCccccc
Q 036269 131 SLLEILDLSESDVSEIPV 148 (623)
Q Consensus 131 ~~L~~L~l~~~~i~~lp~ 148 (623)
.+|++|++++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666666654
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.12 E-value=0.052 Score=48.81 Aligned_cols=80 Identities=21% Similarity=0.219 Sum_probs=39.3
Q ss_pred CCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEE
Q 036269 57 CPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEIL 136 (623)
Q Consensus 57 ~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L 136 (623)
....+.||++.|+...+... |+.++.|..|+++.+.+ ..+|..+.....++.++..
T Consensus 41 ~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~---~~~~~d~~q~~e~~~~~~~-------------------- 96 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQI---KFLPKDAKQQRETVNAASH-------------------- 96 (326)
T ss_pred cceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhH---hhChhhHHHHHHHHHHHhh--------------------
Confidence 34455555555554433332 24445555555555554 4445444444444444444
Q ss_pred EcCCCCCccccccccCCCccCEEeccC
Q 036269 137 DLSESDVSEIPVSFGRLGHLRLLDLTD 163 (623)
Q Consensus 137 ~l~~~~i~~lp~~i~~l~~L~~L~l~~ 163 (623)
.|+.+..|.++++.+++++++..+
T Consensus 97 ---~n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 97 ---KNNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred ---ccchhhCCccccccCCcchhhhcc
Confidence 444445555555555555555544
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.05 E-value=2.7 Score=23.57 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=13.3
Q ss_pred cCCcEEEcCCCCCccccc
Q 036269 131 SLLEILDLSESDVSEIPV 148 (623)
Q Consensus 131 ~~L~~L~l~~~~i~~lp~ 148 (623)
++|+.|++++|.++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357778888888777774
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=69.23 E-value=1.7 Score=23.75 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=5.7
Q ss_pred CcccEEEccCCcc
Q 036269 82 KDLKVLDLGGSGV 94 (623)
Q Consensus 82 ~~Lr~L~l~~~~~ 94 (623)
++|++|++++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 4455555555554
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.26 E-value=5.4 Score=22.42 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=10.4
Q ss_pred cCCcEEEcCCCCCccc
Q 036269 131 SLLEILDLSESDVSEI 146 (623)
Q Consensus 131 ~~L~~L~l~~~~i~~l 146 (623)
.+|+.|+++.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4667777777766543
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=58.89 E-value=0.29 Score=50.83 Aligned_cols=181 Identities=25% Similarity=0.149 Sum_probs=113.7
Q ss_pred CcEEEcccCCccc-----ccccC-CCCCcceEEccCCCCCCCCh----hhHhCC-CcccEEEccCCcccccC--CCchhh
Q 036269 38 LTGISLMFNDIHE-----VHEGL-QCPRLQALFLQKNDLLDIPD----PFFQGM-KDLKVLDLGGSGVFSLF--SLPSSL 104 (623)
Q Consensus 38 l~~L~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~l~~----~~~~~l-~~Lr~L~l~~~~~~~~~--~lp~~~ 104 (623)
+.++.+..|.++. +-... ..+.|..|++++|.+.+-.. ..+... ..+++|++..|.++..+ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7888888887752 22222 56788889999998872111 112333 66788888888765322 244556
Q ss_pred hccccCcEEeccCCcCCCCc------cccc----CCcCCcEEEcCCCCCcc-----ccccccCCCc-cCEEeccCCCCCC
Q 036269 105 SFLINLRTLSLHDCQHFGDL------SLIG----ELSLLEILDLSESDVSE-----IPVSFGRLGH-LRLLDLTDCYNLE 168 (623)
Q Consensus 105 ~~l~~L~~L~l~~~~~l~~i------~~~~----~l~~L~~L~l~~~~i~~-----lp~~i~~l~~-L~~L~l~~~~~~~ 168 (623)
....+++.++++.|. +... ..+. ...++++|++.++.++. +-..+...+. +..+++.. +.+.
T Consensus 169 ~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~ 246 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-NKLG 246 (478)
T ss_pred hcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-cCcc
Confidence 678889999999988 5221 2333 46789999999987761 1223444455 66688777 3343
Q ss_pred cC-----chhhhhcc-ccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCcc
Q 036269 169 LI-----PRGVLSRL-RKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEI 228 (623)
Q Consensus 169 ~l-----~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 228 (623)
+. .+. +..+ ..++++++..|.+.... .......+..+++++.+.++.|...+
T Consensus 247 d~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~~-------~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPC-LSVLSETLRVLDLSRNSITEKG-------VRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHH-hcccchhhhhhhhhcCCccccc-------hHHHHHHHhhhHHHHHhhcccCcccc
Confidence 22 221 3344 56788999888874322 23444556677789999998887543
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=55.48 E-value=0.14 Score=53.20 Aligned_cols=182 Identities=22% Similarity=0.185 Sum_probs=115.8
Q ss_pred cceEEccCCCCCCCC----hhhHhCCCcccEEEccCCcccccCC---Cchhhhcc-ccCcEEeccCCcCCCCc------c
Q 036269 60 LQALFLQKNDLLDIP----DPFFQGMKDLKVLDLGGSGVFSLFS---LPSSLSFL-INLRTLSLHDCQHFGDL------S 125 (623)
Q Consensus 60 L~~L~l~~~~~~~l~----~~~~~~l~~Lr~L~l~~~~~~~~~~---lp~~~~~l-~~L~~L~l~~~~~l~~i------~ 125 (623)
+..|.+.+|.+.+-. ...+...+.|..|++++|.+.. .. +-..+... ..+++|++..|. +++. .
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~-~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGD-EGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCcc-HhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHH
Confidence 788999999887322 2235678999999999998841 11 11112222 467888888887 6443 4
Q ss_pred cccCCcCCcEEEcCCCCCc-----cccccc----cCCCccCEEeccCCCCCCcCc---hhhhhcccc-CcEEEecccccc
Q 036269 126 LIGELSLLEILDLSESDVS-----EIPVSF----GRLGHLRLLDLTDCYNLELIP---RGVLSRLRK-LEELYMSKTFCH 192 (623)
Q Consensus 126 ~~~~l~~L~~L~l~~~~i~-----~lp~~i----~~l~~L~~L~l~~~~~~~~l~---~~~~~~l~~-L~~L~l~~~~~~ 192 (623)
.+.....++.++++.|.+. .++..+ ....++++|++.+|....... ...+...+. +..|++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 5666889999999999774 223333 357899999999975432111 122444555 667888887662
Q ss_pred cccccccccccccccccccCC-CCccEEEeecCCCccCCC-----c-ccccCccEEEEEeCCCCC
Q 036269 193 WQFENEDDSRSNAKFIELGAL-SRLTSLHIDIPEGEIMPS-----D-MSFQNLTSFSITIGGPEE 250 (623)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~-----~-~~~~~L~~L~l~~~~~~~ 250 (623)
.. ........+..+ ..++.+++..|.+..--. . ..++.++.+.++.++...
T Consensus 247 d~-------g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DV-------GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hH-------HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 10 112233344555 678999999988643322 1 566789999998887543
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=49.81 E-value=14 Score=21.05 Aligned_cols=14 Identities=36% Similarity=0.463 Sum_probs=8.8
Q ss_pred cCCcEEEcCCCCCc
Q 036269 131 SLLEILDLSESDVS 144 (623)
Q Consensus 131 ~~L~~L~l~~~~i~ 144 (623)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666676666654
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.38 E-value=32 Score=35.86 Aligned_cols=77 Identities=26% Similarity=0.277 Sum_probs=49.1
Q ss_pred CCCCcceEEccCCCCCCCC--hhhHhCCCcccEEEccCC--cccccCCCchhhh--ccccCcEEeccCCcCC-CCc----
Q 036269 56 QCPRLQALFLQKNDLLDIP--DPFFQGMKDLKVLDLGGS--GVFSLFSLPSSLS--FLINLRTLSLHDCQHF-GDL---- 124 (623)
Q Consensus 56 ~~~~L~~L~l~~~~~~~l~--~~~~~~l~~Lr~L~l~~~--~~~~~~~lp~~~~--~l~~L~~L~l~~~~~l-~~i---- 124 (623)
+.+.+..+.|++|++.++. .++-...|+|..|+|++| .+. .. .++. +...|+.|-+.||+ + +.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~---~~-~el~K~k~l~Leel~l~GNP-lc~tf~~~s 290 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS---SE-SELDKLKGLPLEELVLEGNP-LCTTFSDRS 290 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc---ch-hhhhhhcCCCHHHeeecCCc-cccchhhhH
Confidence 5667778888888876332 233456788999999988 332 11 1222 34568888899998 6 333
Q ss_pred ccc----cCCcCCcEEE
Q 036269 125 SLI----GELSLLEILD 137 (623)
Q Consensus 125 ~~~----~~l~~L~~L~ 137 (623)
..+ ..+|+|..||
T Consensus 291 ~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHhcchheeec
Confidence 122 2667887776
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.57 E-value=40 Score=35.26 Aligned_cols=65 Identities=20% Similarity=0.039 Sum_probs=33.6
Q ss_pred hhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccc--ccccccccceeeccc
Q 036269 292 LRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERT--LRVTLLKLEWLMIVD 356 (623)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~ 356 (623)
|+|..|+|+++........++.......|++|.+.|++-.+.......+. ....||+|..|+=..
T Consensus 244 pklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG~e 310 (585)
T KOG3763|consen 244 PKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDGVE 310 (585)
T ss_pred chhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeecCcc
Confidence 77778888777433333333322234457777787775443322111110 233577776666443
Done!